AMED_7935 a8c5a304e36b87a78ed3893d57f59362 206 Gene3D G3DSA:3.40.50.150 8 182 1.0E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7935 a8c5a304e36b87a78ed3893d57f59362 206 SUPERFAMILY SSF53335 4 193 1.14E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7935 a8c5a304e36b87a78ed3893d57f59362 206 Pfam PF13649 Methyltransferase domain 48 138 2.1E-19 T 19-04-2016 AMED_7935 a8c5a304e36b87a78ed3893d57f59362 206 PANTHER PTHR10108 6 201 2.1E-25 T 19-04-2016 AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 189 0.0028 T 19-04-2016 AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 Gene3D G3DSA:3.40.50.720 5 234 7.3E-64 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 SUPERFAMILY SSF51735 5 230 2.72E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PANTHER PTHR24322 154 185 9.1E-65 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PANTHER PTHR24322 10 138 9.1E-65 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PANTHER PTHR24322:SF413 154 185 9.1E-65 T 19-04-2016 AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PANTHER PTHR24322:SF413 10 138 9.1E-65 T 19-04-2016 AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 Pfam PF00106 short chain dehydrogenase 6 196 1.3E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 8.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3610 a439c9dbcd2dea2fa9606ad826ed4965 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 342 351 2.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 276 287 2.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 351 362 2.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00385 P450 superfamily signature 241 258 2.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 Gene3D G3DSA:1.10.630.10 12 403 2.2E-122 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 SUPERFAMILY SSF48264 17 403 1.7E-96 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PANTHER PTHR11712 13 403 8.9E-95 T 19-04-2016 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 Pfam PF00067 Cytochrome P450 222 373 1.1E-24 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 293 320 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 199 221 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 145 161 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 276 287 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 351 362 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 342 351 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 162 177 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 98 109 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0028 4e161f356ec103ffa2ec49af196ae3a9 406 PRINTS PR00359 B-class P450 signature 321 336 4.8E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7609 f5da587b287b3c7e3cdde05776625383 191 Gene3D G3DSA:3.10.450.50 140 188 3.3E-4 T 19-04-2016 IPR032710 NTF2-like domain AMED_7609 f5da587b287b3c7e3cdde05776625383 191 PANTHER PTHR37042 26 188 1.5E-24 T 19-04-2016 AMED_7609 f5da587b287b3c7e3cdde05776625383 191 PANTHER PTHR37042:SF2 26 188 1.5E-24 T 19-04-2016 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 Gene3D G3DSA:1.20.140.10 226 390 1.5E-23 T 19-04-2016 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 PANTHER PTHR10909 2 391 3.4E-114 T 19-04-2016 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 220 1.2E-22 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 Gene3D G3DSA:2.40.110.10 129 225 1.4E-32 T 19-04-2016 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 125 3.9E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 384 2.4E-18 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 SUPERFAMILY SSF47203 235 386 9.83E-17 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 Gene3D G3DSA:1.10.540.10 4 125 2.0E-24 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 SUPERFAMILY SSF56645 4 246 2.09E-67 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3865 72b1ad03b1a7761e13ee51db102d3ea5 392 PANTHER PTHR10909:SF229 2 391 3.4E-114 T 19-04-2016 AMED_1006 917f167e366ab618c23e0383229aebb7 508 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 114 287 2.9E-37 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_1006 917f167e366ab618c23e0383229aebb7 508 PANTHER PTHR33392 31 161 2.1E-65 T 19-04-2016 AMED_1006 917f167e366ab618c23e0383229aebb7 508 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 114 287 3.8E-29 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_1006 917f167e366ab618c23e0383229aebb7 508 PANTHER PTHR33392:SF6 31 161 2.1E-65 T 19-04-2016 AMED_1006 917f167e366ab618c23e0383229aebb7 508 PANTHER PTHR33392 179 492 2.1E-65 T 19-04-2016 AMED_1006 917f167e366ab618c23e0383229aebb7 508 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 386 470 4.1E-11 T 19-04-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain AMED_1006 917f167e366ab618c23e0383229aebb7 508 PANTHER PTHR33392:SF6 179 492 2.1E-65 T 19-04-2016 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 PANTHER PTHR33406 4 651 9.9E-110 T 19-04-2016 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 SUPERFAMILY SSF82866 455 649 9.94E-24 T 19-04-2016 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 Gene3D G3DSA:1.20.1640.10 473 654 2.7E-27 T 19-04-2016 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 Gene3D G3DSA:1.20.1640.10 137 324 1.0E-26 T 19-04-2016 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 Pfam PF03176 MMPL family 465 655 9.5E-29 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 Pfam PF03176 MMPL family 44 346 1.4E-50 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 PANTHER PTHR33406:SF5 4 651 9.9E-110 T 19-04-2016 AMED_3365 469ab2cc4968f7a5be72ef24c8bd4d76 666 SUPERFAMILY SSF82866 136 321 1.7E-27 T 19-04-2016 AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 Gene3D G3DSA:3.30.1330.10 42 162 6.2E-29 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 SUPERFAMILY SSF56042 163 324 3.14E-33 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 Pfam PF02769 AIR synthase related protein, C-terminal domain 170 307 1.4E-14 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 SUPERFAMILY SSF55326 4 160 1.12E-39 T 19-04-2016 AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 PANTHER PTHR10256 3 307 4.1E-106 T 19-04-2016 AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 156 3.1E-19 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 Hamap MF_00625 Selenide, water dikinase [selD]. 2 330 37.315 T 19-04-2016 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 TIGRFAM TIGR00476 selD: selenide, water dikinase 4 308 1.8E-118 T 19-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 Gene3D G3DSA:3.90.650.10 180 262 3.3E-9 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_5118 dde1fa54828175f90a369bb306a2f24d 330 PIRSF PIRSF036407 2 310 7.0E-102 T 19-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AMED_0717 5800669d584574c47691786bbb839905 536 SUPERFAMILY SSF52743 256 467 4.12E-63 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0717 5800669d584574c47691786bbb839905 536 SUPERFAMILY SSF52743 88 193 4.12E-63 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0717 5800669d584574c47691786bbb839905 536 PRINTS PR00723 Subtilisin serine protease family (S8) signature 154 167 7.9E-14 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0717 5800669d584574c47691786bbb839905 536 PRINTS PR00723 Subtilisin serine protease family (S8) signature 406 422 7.9E-14 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0717 5800669d584574c47691786bbb839905 536 PRINTS PR00723 Subtilisin serine protease family (S8) signature 112 131 7.9E-14 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0717 5800669d584574c47691786bbb839905 536 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 407 417 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_0717 5800669d584574c47691786bbb839905 536 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 117 127 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_0717 5800669d584574c47691786bbb839905 536 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 158 168 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_0717 5800669d584574c47691786bbb839905 536 PANTHER PTHR10795:SF419 83 190 8.5E-54 T 19-04-2016 AMED_0717 5800669d584574c47691786bbb839905 536 PANTHER PTHR10795:SF419 249 469 8.5E-54 T 19-04-2016 AMED_0717 5800669d584574c47691786bbb839905 536 PANTHER PTHR10795 83 190 8.5E-54 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0717 5800669d584574c47691786bbb839905 536 PANTHER PTHR10795 249 469 8.5E-54 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0717 5800669d584574c47691786bbb839905 536 Pfam PF00082 Subtilase family 112 458 1.0E-38 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0717 5800669d584574c47691786bbb839905 536 Gene3D G3DSA:3.40.50.200 84 203 2.9E-75 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0717 5800669d584574c47691786bbb839905 536 Gene3D G3DSA:3.40.50.200 257 468 2.9E-75 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0630 83531773745714d20b9018939e9a5243 303 SUPERFAMILY SSF53067 5 295 1.87E-42 T 19-04-2016 AMED_0630 83531773745714d20b9018939e9a5243 303 PANTHER PTHR18964:SF123 5 294 2.1E-34 T 19-04-2016 AMED_0630 83531773745714d20b9018939e9a5243 303 Gene3D G3DSA:3.30.420.40 138 279 1.1E-36 T 19-04-2016 AMED_0630 83531773745714d20b9018939e9a5243 303 Pfam PF00480 ROK family 7 294 3.6E-41 T 19-04-2016 IPR000600 ROK family AMED_0630 83531773745714d20b9018939e9a5243 303 PANTHER PTHR18964 5 294 2.1E-34 T 19-04-2016 AMED_0630 83531773745714d20b9018939e9a5243 303 Gene3D G3DSA:3.30.420.40 5 137 7.9E-24 T 19-04-2016 AMED_2024 fc0accdaaf795152c75a27ef3700b87a 259 PANTHER PTHR32251:SF14 2 255 3.7E-86 T 19-04-2016 AMED_2024 fc0accdaaf795152c75a27ef3700b87a 259 Pfam PF06966 Protein of unknown function (DUF1295) 19 249 9.9E-52 T 19-04-2016 IPR010721 Protein of unknown function DUF1295 AMED_2024 fc0accdaaf795152c75a27ef3700b87a 259 PANTHER PTHR32251 2 255 3.7E-86 T 19-04-2016 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 SUPERFAMILY SSF56059 114 336 7.95E-40 T 19-04-2016 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 SMART SM01209 122 295 0.0059 T 19-04-2016 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 Pfam PF13535 ATP-grasp domain 160 297 2.0E-14 T 19-04-2016 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 Gene3D G3DSA:3.30.470.20 128 406 5.2E-31 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 PANTHER PTHR23132 114 370 4.7E-22 T 19-04-2016 AMED_4760 361c9e4768a82c1c9cc3dc4c165d8ac9 423 Gene3D G3DSA:3.40.50.20 31 127 6.8E-7 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_4960 8d001fc94ac3d2315420de2167a3fed0 140 SUPERFAMILY SSF50475 31 122 3.31E-6 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4960 8d001fc94ac3d2315420de2167a3fed0 140 PANTHER PTHR39428 19 138 1.4E-28 T 19-04-2016 AMED_4960 8d001fc94ac3d2315420de2167a3fed0 140 Pfam PF04075 Domain of unknown function (DUF385) 16 136 1.0E-28 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_4960 8d001fc94ac3d2315420de2167a3fed0 140 Gene3D G3DSA:2.30.110.10 33 98 9.9E-4 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4960 8d001fc94ac3d2315420de2167a3fed0 140 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 27 136 2.0E-27 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:3.10.560.10 416 454 0.001 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF52833 20 135 7.83E-28 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 134 5.1E-25 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 220 392 2.0E-47 T 19-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF140490 501 575 3.79E-19 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF142984 414 496 4.71E-22 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 505 575 5.2E-19 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 SMART SM00928 501 546 2.7E-11 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 Pfam PF10531 SLBB domain 416 460 3.6E-11 T 19-04-2016 IPR019554 Soluble ligand binding domain AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 PANTHER PTHR11780:SF10 79 575 2.7E-228 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 Gene3D G3DSA:3.40.30.10 79 134 1.9E-5 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 SUPERFAMILY SSF142019 181 411 1.44E-81 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 PANTHER PTHR11780 79 575 2.7E-228 T 19-04-2016 AMED_4578 214b7a3e301cf5b70372cc44a083474c 581 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 514 525 - T 19-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 SUPERFAMILY SSF51989 167 590 1.57E-112 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 ProSitePatterns PS00656 Glycosyl hydrolases family 6 signature 2. 303 312 - T 19-04-2016 IPR001524 Glycoside hydrolase, family 6, conserved site GO:0004553|GO:0005975 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 Gene3D G3DSA:2.60.40.290 27 128 1.4E-34 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PANTHER PTHR34876 488 591 1.8E-129 T 19-04-2016 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PANTHER PTHR34876 161 465 1.8E-129 T 19-04-2016 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 Pfam PF00553 Cellulose binding domain 28 126 1.9E-27 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PANTHER PTHR34876:SF4 488 591 1.8E-129 T 19-04-2016 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PANTHER PTHR34876:SF4 161 465 1.8E-129 T 19-04-2016 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 SUPERFAMILY SSF49384 25 127 2.79E-29 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 ProSitePatterns PS00655 Glycosyl hydrolases family 6 signature 1. 252 268 - T 19-04-2016 IPR001524 Glycoside hydrolase, family 6, conserved site GO:0004553|GO:0005975 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 SMART SM00637 28 126 8.6E-41 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 Pfam PF01341 Glycosyl hydrolases family 6 193 538 2.8E-100 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 348 361 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 247 260 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 452 465 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 196 215 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 388 398 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 492 512 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 515 529 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PRINTS PR00733 Glycosyl hydrolase family 6 signature 281 296 2.1E-35 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 PIRSF PIRSF001100 2 590 6.4E-106 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_5191 84b5148a1b6225270be8bc1eee853f3a 591 Gene3D G3DSA:3.20.20.40 161 590 9.1E-131 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PANTHER PTHR24423 105 380 1.3E-57 T 19-04-2016 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PANTHER PTHR24423 1 6 1.3E-57 T 19-04-2016 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SUPERFAMILY SSF55874 235 380 1.37E-26 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Gene3D G3DSA:3.30.565.10 235 380 7.4E-28 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SUPERFAMILY SSF47384 148 231 3.34E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SUPERFAMILY SSF158472 113 162 5.89E-9 T 19-04-2016 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 273 381 3.5E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Pfam PF00672 HAMP domain 92 160 7.4E-16 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 380 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 361 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 321 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 335 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Gene3D G3DSA:1.10.287.130 155 227 7.8E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 Pfam PF00512 His Kinase A (phospho-acceptor) domain 165 231 3.1E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SMART SM00388 165 231 4.1E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SMART SM00304 111 164 3.9E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8468 d6f3ec50f21fb6c70de3ef60c0afbf8e 382 SMART SM00387 273 382 1.4E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7487 41ae2140f4d200329db736435f077e9e 273 SUPERFAMILY SSF161098 36 262 4.84E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7487 41ae2140f4d200329db736435f077e9e 273 PANTHER PTHR32243:SF13 1 273 1.4E-68 T 19-04-2016 AMED_7487 41ae2140f4d200329db736435f077e9e 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 263 4.1E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7487 41ae2140f4d200329db736435f077e9e 273 PANTHER PTHR32243 1 273 1.4E-68 T 19-04-2016 AMED_7487 41ae2140f4d200329db736435f077e9e 273 Gene3D G3DSA:1.10.3720.10 41 271 7.5E-48 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0282 1061d5e3dada8f7a41ba4740a5ce8ad3 223 PANTHER PTHR24094:SF14 48 223 8.1E-69 T 19-04-2016 AMED_0282 1061d5e3dada8f7a41ba4740a5ce8ad3 223 PANTHER PTHR24094 48 223 8.1E-69 T 19-04-2016 AMED_0282 1061d5e3dada8f7a41ba4740a5ce8ad3 223 Pfam PF07510 Protein of unknown function (DUF1524) 118 218 1.1E-7 T 19-04-2016 IPR011089 Domain of unknown function DUF1524 AMED_0479 1495a1e52257879c55c4328554c504b4 307 Pfam PF02629 CoA binding domain 136 233 8.3E-18 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_0479 1495a1e52257879c55c4328554c504b4 307 Gene3D G3DSA:1.10.10.10 58 129 1.4E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0479 1495a1e52257879c55c4328554c504b4 307 SUPERFAMILY SSF46785 61 133 3.63E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0479 1495a1e52257879c55c4328554c504b4 307 PANTHER PTHR35786 47 269 4.7E-97 T 19-04-2016 AMED_0479 1495a1e52257879c55c4328554c504b4 307 Gene3D G3DSA:3.40.50.720 131 265 6.8E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0479 1495a1e52257879c55c4328554c504b4 307 SMART SM00881 133 234 1.1E-15 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_0479 1495a1e52257879c55c4328554c504b4 307 SUPERFAMILY SSF51735 138 258 1.18E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0479 1495a1e52257879c55c4328554c504b4 307 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 55 263 34.391 T 19-04-2016 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 AMED_0479 1495a1e52257879c55c4328554c504b4 307 PANTHER PTHR35786:SF1 47 269 4.7E-97 T 19-04-2016 AMED_0479 1495a1e52257879c55c4328554c504b4 307 Pfam PF06971 Putative DNA-binding protein N-terminus 60 107 2.8E-18 T 19-04-2016 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 Gene3D G3DSA:3.50.50.60 158 288 7.6E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 Gene3D G3DSA:3.30.390.30 338 459 1.1E-37 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 4.5E-41 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 36 46 - T 19-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 Gene3D G3DSA:3.50.50.60 3 157 9.8E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.4E-23 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 6.4E-23 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 6.4E-23 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 6.4E-23 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 6.4E-23 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 457 1.2E-27 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PANTHER PTHR22912 3 120 1.5E-140 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PANTHER PTHR22912 136 461 1.5E-140 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 SUPERFAMILY SSF55424 344 459 1.01E-31 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 320 4.5E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 TIGRFAM TIGR03452 mycothione_red: mycothione reductase 3 461 1.6E-202 T 19-04-2016 IPR017817 Mycothione reductase MetaCyc: PWY-6421 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PIRSF PIRSF000350 1 444 1.9E-83 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PANTHER PTHR22912:SF125 3 120 1.5E-140 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 PANTHER PTHR22912:SF125 136 461 1.5E-140 T 19-04-2016 AMED_2053 c9fb79e8b4ed88fac4f528c22e431e22 464 SUPERFAMILY SSF51905 3 371 1.57E-42 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 PANTHER PTHR23501 1 439 4.4E-116 T 19-04-2016 AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 PANTHER PTHR23501:SF76 1 439 4.4E-116 T 19-04-2016 AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 SUPERFAMILY SSF103473 235 448 1.19E-53 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 SUPERFAMILY SSF103473 2 181 1.19E-53 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 54 70 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 Gene3D G3DSA:1.20.1250.20 2 180 5.7E-23 T 19-04-2016 AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 Gene3D G3DSA:1.20.1250.20 251 441 1.2E-15 T 19-04-2016 AMED_7344 2df5593a4226eef84a4c0c25f76b6f6d 467 Pfam PF07690 Major Facilitator Superfamily 6 397 8.7E-46 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 Pfam PF07745 Glycosyl hydrolase family 53 35 384 1.3E-99 T 19-04-2016 IPR011683 Glycosyl hydrolase family 53 GO:0015926 AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 PANTHER PTHR34983:SF1 5 182 2.0E-101 T 19-04-2016 AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 PANTHER PTHR34983:SF1 201 387 2.0E-101 T 19-04-2016 AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 SUPERFAMILY SSF51445 204 387 1.58E-73 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 SUPERFAMILY SSF51445 31 176 1.58E-73 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 Gene3D G3DSA:3.20.20.80 14 386 3.3E-120 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 PANTHER PTHR34983 5 182 2.0E-101 T 19-04-2016 AMED_7414 5db96315e5387b0f019ef8eef17dead8 390 PANTHER PTHR34983 201 387 2.0E-101 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 PANTHER PTHR23501:SF13 3 448 3.3E-180 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 SUPERFAMILY SSF103473 5 206 1.96E-48 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 SUPERFAMILY SSF103473 258 436 1.96E-48 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 SUPERFAMILY SSF103473 518 539 1.96E-48 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 PANTHER PTHR23501 479 544 3.3E-180 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 Gene3D G3DSA:1.20.1250.20 519 539 2.3E-18 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 Gene3D G3DSA:1.20.1250.20 12 194 9.3E-20 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 Gene3D G3DSA:1.20.1250.20 294 438 2.3E-18 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 Pfam PF07690 Major Facilitator Superfamily 12 426 2.8E-39 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 PANTHER PTHR23501 3 448 3.3E-180 T 19-04-2016 AMED_5009 b55bda64b530e66886ff41e14e7bb393 556 PANTHER PTHR23501:SF13 479 544 3.3E-180 T 19-04-2016 AMED_7455 cbe943248214b86be02b6748985c7d0b 135 SUPERFAMILY SSF46785 11 84 1.9E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7455 cbe943248214b86be02b6748985c7d0b 135 SMART SM00345 22 81 1.3E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7455 cbe943248214b86be02b6748985c7d0b 135 Gene3D G3DSA:1.10.10.10 9 82 3.9E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7455 cbe943248214b86be02b6748985c7d0b 135 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 81 1.9E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7455 cbe943248214b86be02b6748985c7d0b 135 PANTHER PTHR38445:SF2 5 126 3.2E-24 T 19-04-2016 AMED_7455 cbe943248214b86be02b6748985c7d0b 135 PANTHER PTHR38445 5 126 3.2E-24 T 19-04-2016 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 153 428 1.1E-103 T 19-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 PANTHER PTHR11564 119 428 1.4E-114 T 19-04-2016 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 Pfam PF00448 SRP54-type protein, GTPase domain 230 429 1.5E-71 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 SMART SM00963 129 209 8.9E-16 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 SMART SM00382 229 379 1.7E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1907 ae7330faf92184c85169583a7b2834ae 429 PANTHER PTHR11564:SF16 119 428 1.4E-114 T 19-04-2016 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 Gene3D G3DSA:1.20.120.140 154 240 2.4E-24 T 19-04-2016 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 402 415 - T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 Pfam PF02881 SRP54-type protein, helical bundle domain 144 205 1.5E-9 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 SUPERFAMILY SSF47364 124 203 1.83E-17 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 152 429 57.317 T 19-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMED_1907 ae7330faf92184c85169583a7b2834ae 429 Gene3D G3DSA:3.40.50.300 241 429 2.6E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1907 ae7330faf92184c85169583a7b2834ae 429 SUPERFAMILY SSF52540 228 428 1.99E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1907 ae7330faf92184c85169583a7b2834ae 429 SMART SM00962 230 429 7.7E-101 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 SMART SM00382 36 228 1.5E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 296 3.2E-13 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 228 315 2.8E-16 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 Gene3D G3DSA:3.40.50.300 4 251 3.5E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 PANTHER PTHR24220 5 317 2.0E-109 T 19-04-2016 AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 SUPERFAMILY SSF52540 6 249 1.81E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 PANTHER PTHR24220:SF81 5 317 2.0E-109 T 19-04-2016 AMED_3744 28b18720ad34b293787d7a055d3cafb8 320 Pfam PF00005 ABC transporter 28 178 4.2E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.47.10 36 296 1.8E-85 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:1.10.1200.10 1575 1649 1.4E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00825 Beta-ketoacyl synthase 36 462 5.5E-207 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 197 213 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1603 1618 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 PANTHER PTHR11712 6 1648 0.0 T 19-04-2016 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 PANTHER PTHR11712:SF242 6 1648 0.0 T 19-04-2016 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.50.720 1302 1507 1.1E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00826 911 1107 9.1E-49 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 412 487 2.4E-11 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.30.70.250 686 750 6.7E-10 T 19-04-2016 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF14765 Polyketide synthase dehydratase 915 1149 2.8E-30 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF51735 1155 1291 5.12E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 292 409 3.4E-45 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF53901 31 408 4.83E-100 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF52151 752 855 1.6E-67 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF52151 561 687 1.6E-67 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF51735 1300 1513 1.32E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.47.10 297 464 4.5E-68 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.366.10 751 860 1.4E-72 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Gene3D G3DSA:3.40.366.10 561 681 1.4E-72 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF101173 4 34 2.48E-5 T 19-04-2016 IPR015083 Polyketide synthase, docking domain GO:0016740|GO:0048037 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM01294 1577 1644 4.8E-4 T 19-04-2016 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 34 284 6.1E-85 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF47336 1570 1655 4.71E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1300 1475 2.3E-49 T 19-04-2016 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF00698 Acyl transferase domain 563 878 1.5E-84 T 19-04-2016 IPR014043 Acyl transferase AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF08990 Erythronolide synthase docking 2 27 5.1E-9 T 19-04-2016 IPR015083 Polyketide synthase, docking domain GO:0016740|GO:0048037 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF00550 Phosphopantetheine attachment site 1578 1644 5.0E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 565 859 1.5E-118 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 Pfam PF08659 KR domain 1300 1473 4.1E-51 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SUPERFAMILY SSF55048 686 751 2.35E-14 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0620 fa4b710071321f7e967d6575b01f5c00 1728 SMART SM00823 Phosphopantetheine attachment site 1576 1648 8.8E-31 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Gene3D G3DSA:3.30.300.30 403 500 6.3E-18 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Pfam PF00501 AMP-binding enzyme 27 409 2.0E-64 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 SUPERFAMILY SSF52777 613 778 1.22E-27 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Gene3D G3DSA:2.30.38.10 322 401 9.1E-19 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Gene3D G3DSA:1.10.1200.10 514 582 7.2E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Pfam PF00550 Phosphopantetheine attachment site 517 579 2.8E-5 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 SUPERFAMILY SSF52777 794 1016 4.56E-23 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 SUPERFAMILY SSF56801 22 508 1.7E-105 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 SMART SM00823 Phosphopantetheine attachment site 515 583 0.0049 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 PANTHER PTHR24095 22 1018 1.9E-122 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 SUPERFAMILY SSF47336 514 582 1.57E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Gene3D G3DSA:3.40.50.980 22 179 2.9E-29 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Pfam PF00668 Condensation domain 614 890 7.9E-25 T 19-04-2016 IPR001242 Condensation domain AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 PANTHER PTHR24095:SF137 22 1018 1.9E-122 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 Gene3D G3DSA:3.40.50.980 182 321 3.9E-22 T 19-04-2016 AMED_5409 0ca5cb13ad68a95afb6ef5ed1850ed8d 1022 ProSitePatterns PS00455 Putative AMP-binding domain signature. 157 168 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PANTHER PTHR11596:SF5 40 288 4.1E-114 T 19-04-2016 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PANTHER PTHR11596:SF5 308 463 4.1E-114 T 19-04-2016 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PANTHER PTHR11596 40 288 4.1E-114 T 19-04-2016 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PANTHER PTHR11596 308 463 4.1E-114 T 19-04-2016 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 Pfam PF00245 Alkaline phosphatase 423 463 1.8E-5 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 Pfam PF00245 Alkaline phosphatase 61 420 1.0E-110 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 155 175 1.7E-36 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 61 81 1.7E-36 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 218 228 1.7E-36 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 118 133 1.7E-36 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 PRINTS PR00113 Alkaline phosphatase signature 313 342 1.7E-36 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 SMART SM00098 62 464 8.5E-160 T 19-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 Gene3D G3DSA:3.40.720.10 46 463 6.4E-127 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 ProSitePatterns PS00123 Alkaline phosphatase active site. 118 126 - T 19-04-2016 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMED_2768 ff2c2efc8848f2a2de6f2ce04b80f1a1 464 SUPERFAMILY SSF53649 51 463 1.83E-118 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_9075 b997757f271f73f557c6e9c3a7d8b47e 340 Pfam PF01212 Beta-eliminating lyase 9 292 1.8E-75 T 19-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 AMED_9075 b997757f271f73f557c6e9c3a7d8b47e 340 Gene3D G3DSA:3.40.640.10 5 254 7.1E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_9075 b997757f271f73f557c6e9c3a7d8b47e 340 PIRSF PIRSF017617 1 340 1.5E-105 T 19-04-2016 IPR023603 Threonine aldolase AMED_9075 b997757f271f73f557c6e9c3a7d8b47e 340 Gene3D G3DSA:3.90.1150.10 256 337 4.9E-17 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_9075 b997757f271f73f557c6e9c3a7d8b47e 340 SUPERFAMILY SSF53383 8 337 2.04E-94 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_9075 b997757f271f73f557c6e9c3a7d8b47e 340 PANTHER PTHR10289 5 337 4.4E-120 T 19-04-2016 AMED_3952 d517bc04794e010a24aec7971ce5228e 275 SUPERFAMILY SSF161098 3 275 5.79E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3952 d517bc04794e010a24aec7971ce5228e 275 Gene3D G3DSA:1.10.3720.10 3 262 1.1E-55 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3952 d517bc04794e010a24aec7971ce5228e 275 PANTHER PTHR32243 1 275 6.4E-76 T 19-04-2016 AMED_3952 d517bc04794e010a24aec7971ce5228e 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 263 2.7E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8841 1a253c605a504af3fa5845bafdf283da 391 SUPERFAMILY SSF53474 2 379 6.06E-88 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8841 1a253c605a504af3fa5845bafdf283da 391 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 161 176 - T 19-04-2016 IPR019826 Carboxylesterase type B, active site AMED_8841 1a253c605a504af3fa5845bafdf283da 391 PANTHER PTHR11559:SF142 1 343 2.5E-97 T 19-04-2016 AMED_8841 1a253c605a504af3fa5845bafdf283da 391 PANTHER PTHR11559 1 343 2.5E-97 T 19-04-2016 AMED_8841 1a253c605a504af3fa5845bafdf283da 391 Gene3D G3DSA:3.40.50.1820 2 382 3.2E-98 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8841 1a253c605a504af3fa5845bafdf283da 391 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 70 80 - T 19-04-2016 IPR019819 Carboxylesterase type B, conserved site AMED_8841 1a253c605a504af3fa5845bafdf283da 391 Pfam PF00135 Carboxylesterase family 2 296 1.9E-70 T 19-04-2016 IPR002018 Carboxylesterase, type B AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 PANTHER PTHR30081 33 367 1.6E-60 T 19-04-2016 AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 65 328 7.8E-64 T 19-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 Pfam PF07549 SecD/SecF GG Motif 60 81 9.3E-5 T 19-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 188 202 1.4E-20 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 271 286 1.4E-20 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 64 79 1.4E-20 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 PRINTS PR01755 Bacterial translocase SecF protein signature 236 254 1.4E-20 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 Pfam PF02355 Protein export membrane protein 151 337 2.2E-54 T 19-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 148 325 3.4E-48 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 SUPERFAMILY SSF82866 159 337 7.98E-28 T 19-04-2016 AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 Gene3D G3DSA:1.20.1640.10 163 341 2.2E-16 T 19-04-2016 AMED_5296 a4ef912bdabbb41cd0d6b4040006f0b3 404 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 37 339 23.037 T 19-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMED_8202 bd69eb14b232ac758807b083546da7d4 136 Pfam PF13432 Tetratricopeptide repeat 56 110 8.2E-7 T 19-04-2016 AMED_8202 bd69eb14b232ac758807b083546da7d4 136 SMART SM00028 51 84 0.0061 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8202 bd69eb14b232ac758807b083546da7d4 136 SMART SM00028 85 118 330.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8202 bd69eb14b232ac758807b083546da7d4 136 Gene3D G3DSA:1.25.40.10 21 116 1.3E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8202 bd69eb14b232ac758807b083546da7d4 136 SUPERFAMILY SSF48452 21 116 6.03E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 Gene3D G3DSA:3.20.20.300 25 327 8.5E-96 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 SUPERFAMILY SSF51445 25 344 6.32E-88 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PRINTS PR00133 Glycosyl hydrolase family 3 signature 71 87 1.0E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PRINTS PR00133 Glycosyl hydrolase family 3 signature 100 119 1.0E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PRINTS PR00133 Glycosyl hydrolase family 3 signature 146 162 1.0E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PRINTS PR00133 Glycosyl hydrolase family 3 signature 247 265 1.0E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PRINTS PR00133 Glycosyl hydrolase family 3 signature 177 193 1.0E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 95 305 6.3E-41 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 SUPERFAMILY SSF52279 347 573 5.23E-58 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 Pfam PF14310 Fibronectin type III-like domain 603 672 6.0E-24 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 Gene3D G3DSA:3.40.50.1700 333 573 2.4E-74 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 SMART SM01217 603 672 7.5E-31 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PANTHER PTHR30620:SF18 1 684 4.6E-246 T 19-04-2016 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 PANTHER PTHR30620 1 684 4.6E-246 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_1718 ec6bc22618fb5ac5045129bd3585c1a6 684 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 347 570 7.0E-59 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_0438 2ae8f89ce97c57f8451bc5eee10f7285 259 Gene3D G3DSA:3.40.50.150 8 232 1.2E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0438 2ae8f89ce97c57f8451bc5eee10f7285 259 Pfam PF08241 Methyltransferase domain 36 129 6.4E-25 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_0438 2ae8f89ce97c57f8451bc5eee10f7285 259 PANTHER PTHR10108 6 205 2.8E-29 T 19-04-2016 AMED_0438 2ae8f89ce97c57f8451bc5eee10f7285 259 SUPERFAMILY SSF53335 8 239 1.96E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8260 7659bfa6c8f4184d81ebc76d94f23f17 522 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 120 254 7.4E-12 T 19-04-2016 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 AMED_8260 7659bfa6c8f4184d81ebc76d94f23f17 522 PANTHER PTHR10050 220 301 2.2E-41 T 19-04-2016 IPR027005 Glycosyltransferase 39-like AMED_8260 7659bfa6c8f4184d81ebc76d94f23f17 522 PANTHER PTHR10050:SF29 220 301 2.2E-41 T 19-04-2016 AMED_8260 7659bfa6c8f4184d81ebc76d94f23f17 522 PANTHER PTHR10050:SF29 40 204 2.2E-41 T 19-04-2016 AMED_8260 7659bfa6c8f4184d81ebc76d94f23f17 522 PANTHER PTHR10050 40 204 2.2E-41 T 19-04-2016 IPR027005 Glycosyltransferase 39-like AMED_8260 7659bfa6c8f4184d81ebc76d94f23f17 522 Pfam PF16192 C-terminal four TMM region of protein-O-mannosyltransferase 339 521 1.0E-17 T 19-04-2016 IPR032421 Protein O-mannosyl-transferase, C-terminal four TM domain KEGG: 00500+2.4.1.10|KEGG: 00514+2.4.1.109|MetaCyc: PWY-822|UniPathway: UPA00378 AMED_0827 a5f4e86eb568789f31386bb207842717 258 Gene3D G3DSA:2.60.120.280 16 131 1.3E-5 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_0827 a5f4e86eb568789f31386bb207842717 258 Gene3D G3DSA:1.10.10.60 155 211 1.7E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0827 a5f4e86eb568789f31386bb207842717 258 PANTHER PTHR11019:SF75 4 258 2.0E-61 T 19-04-2016 AMED_0827 a5f4e86eb568789f31386bb207842717 258 SUPERFAMILY SSF46689 161 207 1.66E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0827 a5f4e86eb568789f31386bb207842717 258 PANTHER PTHR11019 4 258 2.0E-61 T 19-04-2016 AMED_0827 a5f4e86eb568789f31386bb207842717 258 Pfam PF02311 AraC-like ligand binding domain 17 135 5.7E-17 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_0827 a5f4e86eb568789f31386bb207842717 258 Gene3D G3DSA:1.10.10.60 212 256 5.5E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0827 a5f4e86eb568789f31386bb207842717 258 SUPERFAMILY SSF46689 209 256 8.6E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0827 a5f4e86eb568789f31386bb207842717 258 SMART SM00342 173 255 2.8E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_0827 a5f4e86eb568789f31386bb207842717 258 SUPERFAMILY SSF51215 13 130 3.4E-12 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_0827 a5f4e86eb568789f31386bb207842717 258 Pfam PF12833 Helix-turn-helix domain 183 256 2.9E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3159 6187b90097058b12382b812121f2ca2e 230 Gene3D G3DSA:3.40.50.2300 3 127 6.0E-43 T 19-04-2016 AMED_3159 6187b90097058b12382b812121f2ca2e 230 Pfam PF00072 Response regulator receiver domain 6 119 3.1E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3159 6187b90097058b12382b812121f2ca2e 230 SMART SM00862 151 225 9.4E-29 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3159 6187b90097058b12382b812121f2ca2e 230 SMART SM00448 3 118 6.2E-46 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3159 6187b90097058b12382b812121f2ca2e 230 SUPERFAMILY SSF52172 4 180 3.84E-44 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3159 6187b90097058b12382b812121f2ca2e 230 Gene3D G3DSA:1.10.10.10 130 228 6.8E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3159 6187b90097058b12382b812121f2ca2e 230 PANTHER PTHR26402:SF602 3 229 1.2E-87 T 19-04-2016 AMED_3159 6187b90097058b12382b812121f2ca2e 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.7E-26 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3159 6187b90097058b12382b812121f2ca2e 230 PANTHER PTHR26402 3 229 1.2E-87 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 1125 1234 1.1E-25 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 665 931 1.1E-28 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81665 631 692 2.09E-50 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81665 797 890 2.09E-50 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81665 1204 1373 2.09E-50 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PANTHER PTHR24093:SF268 571 589 2.7E-183 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81660 927 1063 5.23E-5 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PANTHER PTHR24093 611 1268 2.7E-183 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PANTHER PTHR24093 571 589 2.7E-183 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 736 750 5.5E-28 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1154 1173 5.5E-28 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 896 910 5.5E-28 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1178 1190 5.5E-28 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1053 1064 5.5E-28 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 1075 1085 5.5E-28 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 Pfam PF00689 Cation transporting ATPase, C-terminus 1239 1373 1.4E-14 T 19-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 Pfam PF00702 haloacid dehalogenase-like hydrolase 893 1168 1.0E-23 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:1.20.1110.10 730 1033 4.4E-44 T 19-04-2016 IPR023298 P-type ATPase, transmembrane domain AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1012 1030 6.5E-15 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1126 1142 6.5E-15 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1186 1211 6.5E-15 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 1154 1170 6.5E-15 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF56784 1009 1258 7.15E-42 T 19-04-2016 IPR023214 HAD-like domain AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF56784 894 914 7.15E-42 T 19-04-2016 IPR023214 HAD-like domain AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 SUPERFAMILY SSF81653 700 795 4.45E-23 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 898 904 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 Pfam PF00122 E1-E2 ATPase 661 887 4.8E-46 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 PANTHER PTHR24093:SF268 611 1268 2.7E-183 T 19-04-2016 AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:1.20.1110.10 633 689 1.5E-56 T 19-04-2016 IPR023298 P-type ATPase, transmembrane domain AMED_3215 333e60299125bd06321f3287bdd6bb06 1392 Gene3D G3DSA:1.20.1110.10 1123 1372 1.5E-56 T 19-04-2016 IPR023298 P-type ATPase, transmembrane domain AMED_3980 2b545002d24522700897dd01e147d075 316 SUPERFAMILY SSF50129 6 144 7.39E-25 T 19-04-2016 IPR011032 GroES-like AMED_3980 2b545002d24522700897dd01e147d075 316 SUPERFAMILY SSF51735 113 263 1.58E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3980 2b545002d24522700897dd01e147d075 316 Gene3D G3DSA:3.90.180.10 3 145 2.5E-27 T 19-04-2016 IPR011032 GroES-like AMED_3980 2b545002d24522700897dd01e147d075 316 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 85 5.6E-6 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3980 2b545002d24522700897dd01e147d075 316 PANTHER PTHR11695:SF28 12 316 6.2E-65 T 19-04-2016 AMED_3980 2b545002d24522700897dd01e147d075 316 Pfam PF00107 Zinc-binding dehydrogenase 151 256 9.4E-15 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3980 2b545002d24522700897dd01e147d075 316 PANTHER PTHR11695 12 316 6.2E-65 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3980 2b545002d24522700897dd01e147d075 316 SMART SM00829 7 313 2.8E-11 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3980 2b545002d24522700897dd01e147d075 316 Gene3D G3DSA:3.40.50.720 146 261 4.4E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 Gene3D G3DSA:3.90.1150.10 299 415 1.0E-40 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 229 266 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 Gene3D G3DSA:3.40.640.10 48 298 3.2E-87 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 SUPERFAMILY SSF53383 10 412 4.22E-129 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 Pfam PF00202 Aminotransferase class-III 12 411 6.8E-119 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 PANTHER PTHR11986 13 415 1.8E-178 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_7878 7606c2b470e88cfad9c899c624c55bcd 418 PANTHER PTHR11986:SF17 13 415 1.8E-178 T 19-04-2016 AMED_7743 5250513e182869cdca3a3ac7b42a91b5 141 PANTHER PTHR11079 9 106 2.1E-18 T 19-04-2016 AMED_7743 5250513e182869cdca3a3ac7b42a91b5 141 Gene3D G3DSA:3.40.140.10 3 132 3.0E-30 T 19-04-2016 AMED_7743 5250513e182869cdca3a3ac7b42a91b5 141 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 104 1.0E-15 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMED_7743 5250513e182869cdca3a3ac7b42a91b5 141 SUPERFAMILY SSF53927 4 140 3.18E-31 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_8700 7163abde031dd87691c10e661e8daa1e 163 Gene3D G3DSA:3.40.1050.10 7 162 5.7E-30 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_8700 7163abde031dd87691c10e661e8daa1e 163 Pfam PF00484 Carbonic anhydrase 32 129 4.4E-11 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_8700 7163abde031dd87691c10e661e8daa1e 163 SUPERFAMILY SSF53056 24 162 8.63E-31 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_8700 7163abde031dd87691c10e661e8daa1e 163 SMART SM00947 24 163 2.1E-24 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_8700 7163abde031dd87691c10e661e8daa1e 163 PANTHER PTHR11002 27 163 2.7E-40 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_8700 7163abde031dd87691c10e661e8daa1e 163 PANTHER PTHR11002:SF9 27 163 2.7E-40 T 19-04-2016 AMED_5395 a5df32615cca197297dcd895d54e27d5 243 SUPERFAMILY SSF53474 8 222 2.46E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5395 a5df32615cca197297dcd895d54e27d5 243 PANTHER PTHR11487 6 208 3.7E-45 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_5395 a5df32615cca197297dcd895d54e27d5 243 Gene3D G3DSA:3.40.50.1820 8 214 1.1E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5395 a5df32615cca197297dcd895d54e27d5 243 Pfam PF00975 Thioesterase domain 18 209 2.4E-23 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PANTHER PTHR30154:SF2 4 142 1.4E-37 T 19-04-2016 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 8.1E-16 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 8.1E-16 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 8.1E-16 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 1.5E-17 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Pfam PF01037 Lrp/AsnC ligand binding domain 76 136 2.5E-10 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Gene3D G3DSA:3.30.70.920 57 131 2.7E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 SMART SM00344 4 110 2.5E-31 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 PANTHER PTHR30154 4 142 1.4E-37 T 19-04-2016 AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 SUPERFAMILY SSF54909 66 139 7.24E-12 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 SUPERFAMILY SSF46785 3 63 1.3E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1222 81d02a0ed2e63c1caa5c6d30b96fcb14 150 Gene3D G3DSA:1.10.10.10 5 55 2.7E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2678 1645e3ff9395a83531cc6ef70e54c42c 339 SUPERFAMILY SSF52540 77 212 5.32E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2678 1645e3ff9395a83531cc6ef70e54c42c 339 PANTHER PTHR12169:SF0 31 335 2.2E-66 T 19-04-2016 AMED_2678 1645e3ff9395a83531cc6ef70e54c42c 339 Gene3D G3DSA:3.40.50.300 15 202 5.8E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2678 1645e3ff9395a83531cc6ef70e54c42c 339 PANTHER PTHR12169 31 335 2.2E-66 T 19-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 AMED_2678 1645e3ff9395a83531cc6ef70e54c42c 339 Pfam PF03969 AFG1-like ATPase 233 332 2.4E-16 T 19-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 AMED_2678 1645e3ff9395a83531cc6ef70e54c42c 339 Pfam PF03969 AFG1-like ATPase 41 231 4.1E-42 T 19-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 165 175 1.2E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 269 278 1.2E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 244 263 1.2E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 Gene3D G3DSA:3.40.50.80 239 365 3.4E-31 T 19-04-2016 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 Pfam PF00970 Oxidoreductase FAD-binding domain 140 228 6.8E-11 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PANTHER PTHR22924:SF2 3 364 3.9E-60 T 19-04-2016 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 Gene3D G3DSA:1.10.490.10 3 131 8.6E-36 T 19-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 SUPERFAMILY SSF52343 239 365 1.44E-28 T 19-04-2016 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 Gene3D G3DSA:2.40.30.10 138 230 1.2E-18 T 19-04-2016 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PANTHER PTHR22924 3 364 3.9E-60 T 19-04-2016 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 SUPERFAMILY SSF46458 4 128 1.09E-30 T 19-04-2016 IPR009050 Globin-like AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PRINTS PR00410 Phenol hydroxylase reductase family signature 244 263 1.9E-9 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PRINTS PR00410 Phenol hydroxylase reductase family signature 165 177 1.9E-9 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 PRINTS PR00410 Phenol hydroxylase reductase family signature 269 278 1.9E-9 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 Pfam PF00175 Oxidoreductase NAD-binding domain 245 345 4.0E-16 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 Pfam PF00042 Globin 3 94 5.5E-8 T 19-04-2016 IPR000971 Globin GO:0019825|GO:0020037 AMED_9159 f75896e1cc36afb119f22545e8c840e8 367 SUPERFAMILY SSF63380 138 230 3.58E-19 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PANTHER PTHR10992 204 343 1.5E-65 T 19-04-2016 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PANTHER PTHR10992 59 184 1.5E-65 T 19-04-2016 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 Pfam PF00561 alpha/beta hydrolase fold 74 325 4.7E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 79 97 9.3E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 147 160 9.3E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 99 114 9.3E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 161 174 9.3E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PRINTS PR00412 Epoxide hydrolase signature 318 340 9.3E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 SUPERFAMILY SSF53474 53 339 8.42E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 Gene3D G3DSA:3.40.50.1820 52 339 5.8E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PANTHER PTHR10992:SF764 204 343 1.5E-65 T 19-04-2016 AMED_7475 781a1a01a26a821e8453bde7bce6d4a8 343 PANTHER PTHR10992:SF764 59 184 1.5E-65 T 19-04-2016 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 27 40 1.4E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 27 1.4E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 50 70 1.4E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 Gene3D G3DSA:1.10.1660.10 15 68 2.7E-22 T 19-04-2016 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 PANTHER PTHR30204 7 143 5.4E-59 T 19-04-2016 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 Gene3D G3DSA:1.10.1660.10 69 145 8.9E-18 T 19-04-2016 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 PANTHER PTHR30204:SF0 7 143 5.4E-59 T 19-04-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 SMART SM00422 15 83 1.0E-24 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 Pfam PF09278 MerR, DNA binding 57 122 3.2E-18 T 19-04-2016 IPR015358 Transcription regulator MerR, DNA binding AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 SUPERFAMILY SSF46955 15 136 2.27E-31 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 15 154 3.4E-62 T 19-04-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMED_3010 13e52318587bc8b38c4ebc6dfc11a66c 162 Pfam PF00376 MerR family regulatory protein 16 52 4.9E-15 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4439 4dfa2f71d3749351a5c6856b06e110a8 328 Pfam PF04616 Glycosyl hydrolases family 43 40 325 3.0E-57 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_4439 4dfa2f71d3749351a5c6856b06e110a8 328 PANTHER PTHR22925:SF36 1 325 5.6E-90 T 19-04-2016 AMED_4439 4dfa2f71d3749351a5c6856b06e110a8 328 Gene3D G3DSA:2.115.10.20 18 327 1.0E-81 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_4439 4dfa2f71d3749351a5c6856b06e110a8 328 PANTHER PTHR22925 1 325 5.6E-90 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_4439 4dfa2f71d3749351a5c6856b06e110a8 328 PIRSF PIRSF026534 4 328 5.3E-102 T 19-04-2016 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase GO:0046558 UniPathway: UPA00667 AMED_4439 4dfa2f71d3749351a5c6856b06e110a8 328 SUPERFAMILY SSF75005 16 327 1.06E-71 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3042 dea7c8c23952ac2eff1ef5a112c2c52a 191 PANTHER PTHR30055:SF19 3 163 1.1E-27 T 19-04-2016 AMED_3042 dea7c8c23952ac2eff1ef5a112c2c52a 191 SUPERFAMILY SSF46689 10 76 8.25E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3042 dea7c8c23952ac2eff1ef5a112c2c52a 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 64 1.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3042 dea7c8c23952ac2eff1ef5a112c2c52a 191 SUPERFAMILY SSF48498 98 187 4.58E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3042 dea7c8c23952ac2eff1ef5a112c2c52a 191 PANTHER PTHR30055 3 163 1.1E-27 T 19-04-2016 AMED_3042 dea7c8c23952ac2eff1ef5a112c2c52a 191 Gene3D G3DSA:1.10.357.10 9 190 2.1E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 Pfam PF08031 Berberine and berberine like 426 467 2.2E-12 T 19-04-2016 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 62 95 - T 19-04-2016 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 SUPERFAMILY SSF56176 24 227 6.54E-53 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 PANTHER PTHR11748 23 469 2.6E-104 T 19-04-2016 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 Gene3D G3DSA:3.30.465.10 123 227 7.3E-13 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 Gene3D G3DSA:3.30.43.10 58 114 3.1E-11 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 Pfam PF01565 FAD binding domain 63 196 2.3E-31 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_5316 8a3f09f21afe5f7a965835148da522b5 480 PANTHER PTHR11748:SF86 23 469 2.6E-104 T 19-04-2016 AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 SMART SM00346 9 98 2.5E-7 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 Gene3D G3DSA:1.10.10.10 8 70 2.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 SUPERFAMILY SSF46785 9 79 5.05E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 Pfam PF09339 IclR helix-turn-helix domain 11 58 4.7E-10 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 PANTHER PTHR30136 3 213 4.9E-33 T 19-04-2016 AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 Gene3D G3DSA:3.30.450.40 76 147 7.1E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 Gene3D G3DSA:3.30.450.40 151 212 4.9E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 SUPERFAMILY SSF55781 84 212 1.77E-26 T 19-04-2016 IPR029016 GAF domain-like AMED_6940 8272d5f4aae640d58f3939a6c6769bf6 220 Pfam PF01614 Bacterial transcriptional regulator 151 212 1.2E-9 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 SMART SM00079 30 241 0.0095 T 19-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 PANTHER PTHR18966 29 250 4.3E-25 T 19-04-2016 AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 SUPERFAMILY SSF53850 1 244 4.45E-59 T 19-04-2016 AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 244 9.2E-55 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 Gene3D G3DSA:3.40.190.10 12 134 1.3E-33 T 19-04-2016 AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 Gene3D G3DSA:3.40.190.10 135 202 1.8E-19 T 19-04-2016 AMED_9064 b4da1befa67ff4cb9da1948e157e1565 259 SMART SM00062 30 249 1.9E-52 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_2888 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF52440 1 113 1.8E-43 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_2888 d9b08ff20112aab84ab92b636b509775 649 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 602 619 - T 19-04-2016 IPR001882 Biotin-binding site AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Gene3D G3DSA:2.40.50.100 579 645 2.4E-24 T 19-04-2016 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Gene3D G3DSA:3.30.1490.20 144 193 1.2E-17 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.0E-40 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Pfam PF00364 Biotin-requiring enzyme 581 644 1.6E-18 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_2888 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF56059 83 332 7.78E-62 T 19-04-2016 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 PANTHER PTHR18866 1 645 0.0 T 19-04-2016 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Gene3D G3DSA:3.40.50.20 1 130 8.8E-47 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 142 313 2.7E-65 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 PANTHER PTHR18866:SF85 1 645 0.0 T 19-04-2016 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF51246 321 440 8.89E-36 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_2888 d9b08ff20112aab84ab92b636b509775 649 SMART SM00878 325 438 4.3E-50 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Pfam PF02785 Biotin carboxylase C-terminal domain 325 438 6.3E-34 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_2888 d9b08ff20112aab84ab92b636b509775 649 Gene3D G3DSA:3.30.470.20 195 440 5.2E-92 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 277 284 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2888 d9b08ff20112aab84ab92b636b509775 649 SUPERFAMILY SSF51230 577 645 6.02E-22 T 19-04-2016 IPR011053 Single hybrid motif AMED_2784 2a455887786508cf67f688268af65fac 191 Gene3D G3DSA:1.10.357.10 2 185 2.8E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2784 2a455887786508cf67f688268af65fac 191 SUPERFAMILY SSF46689 2 76 5.49E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2784 2a455887786508cf67f688268af65fac 191 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 52 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_2784 2a455887786508cf67f688268af65fac 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 1.4E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2784 2a455887786508cf67f688268af65fac 191 PANTHER PTHR30328:SF28 1 103 1.5E-26 T 19-04-2016 AMED_2784 2a455887786508cf67f688268af65fac 191 PANTHER PTHR30328 1 103 1.5E-26 T 19-04-2016 AMED_2784 2a455887786508cf67f688268af65fac 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2784 2a455887786508cf67f688268af65fac 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 Pfam PF07729 FCD domain 98 212 2.4E-16 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 PANTHER PTHR11751 96 114 9.1E-22 T 19-04-2016 AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 Gene3D G3DSA:1.20.120.530 94 217 1.3E-19 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 PANTHER PTHR11751:SF436 96 114 9.1E-22 T 19-04-2016 AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 67 1.2E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 SMART SM00895 98 213 1.0E-20 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 Gene3D G3DSA:1.10.10.10 4 67 3.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 SUPERFAMILY SSF48008 94 216 9.42E-21 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 PANTHER PTHR11751 10 76 9.1E-22 T 19-04-2016 AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 PANTHER PTHR11751:SF436 10 76 9.1E-22 T 19-04-2016 AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 SUPERFAMILY SSF46785 4 73 7.81E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1513 6317da7bd9bcd8314f2a449af5d56dc2 222 SMART SM00345 11 69 2.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 SUPERFAMILY SSF46785 19 107 5.25E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 77 92 2.2E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 2.2E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 77 2.2E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 SMART SM00418 27 106 7.4E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 PANTHER PTHR33154 13 110 9.3E-28 T 19-04-2016 AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 Gene3D G3DSA:1.10.10.10 27 108 1.3E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 Pfam PF12840 Helix-turn-helix domain 27 86 6.2E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2795 9fe30204d6e26ea850adf9ddfc995fac 114 PANTHER PTHR33154:SF2 13 110 9.3E-28 T 19-04-2016 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 Gene3D G3DSA:3.90.400.10 106 178 3.6E-31 T 19-04-2016 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 Pfam PF11941 Domain of unknown function (DUF3459) 439 515 4.2E-10 T 19-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMED_6823 67bba92d3c78c1db414e1568154fb558 516 PANTHER PTHR10357:SF11 1 398 1.4E-152 T 19-04-2016 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 PANTHER PTHR10357:SF11 432 500 1.4E-152 T 19-04-2016 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 Pfam PF00128 Alpha amylase, catalytic domain 29 369 1.0E-84 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 SMART SM00642 14 393 8.7E-117 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 Gene3D G3DSA:3.20.20.80 179 453 7.4E-103 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 Gene3D G3DSA:3.20.20.80 4 105 7.4E-103 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 PANTHER PTHR10357 1 398 1.4E-152 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 PANTHER PTHR10357 432 500 1.4E-152 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_6823 67bba92d3c78c1db414e1568154fb558 516 SUPERFAMILY SSF51445 5 453 3.4E-123 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 704 795 1.2E-17 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF54373 214 325 8.24E-29 T 19-04-2016 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.1360.120 579 675 5.8E-37 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.1360.120 418 496 5.8E-37 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF01571 Aminomethyltransferase folate-binding domain 424 698 3.5E-75 T 19-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF16350 FAD dependent oxidoreductase central domain 365 419 2.1E-16 T 19-04-2016 IPR032503 FAD dependent oxidoreductase, central domain AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF101790 722 807 3.11E-22 T 19-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.9.10 80 133 3.0E-55 T 19-04-2016 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.9.10 214 325 3.0E-55 T 19-04-2016 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF51905 4 214 3.37E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF51905 326 408 3.37E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 PANTHER PTHR13847:SF181 5 442 6.3E-187 T 19-04-2016 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.50.50.60 3 75 5.0E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.50.50.60 134 213 5.0E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.50.50.60 326 406 5.0E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:3.30.70.1400 497 573 3.4E-15 T 19-04-2016 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 SUPERFAMILY SSF103025 415 713 4.55E-93 T 19-04-2016 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Gene3D G3DSA:2.40.30.110 720 794 3.6E-24 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 Pfam PF01266 FAD dependent oxidoreductase 5 362 2.0E-44 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_7548 3cb2ed0db5e11430c3ca592ade5380cb 808 PANTHER PTHR13847 5 442 6.3E-187 T 19-04-2016 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 PANTHER PTHR31776:SF0 646 1272 1.0E-176 T 19-04-2016 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SUPERFAMILY SSF49899 244 450 2.22E-35 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Gene3D G3DSA:2.60.120.200 274 448 9.5E-35 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SMART SM00560 97 235 2.1E-13 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SMART SM00560 304 441 4.6E-19 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SMART SM00560 509 637 0.0054 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SUPERFAMILY SSF49899 31 240 3.76E-32 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SUPERFAMILY SSF49785 682 850 2.34E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SUPERFAMILY SSF49899 451 643 6.9E-26 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Gene3D G3DSA:2.60.120.260 683 848 3.3E-9 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 PANTHER PTHR31776 646 1272 1.0E-176 T 19-04-2016 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SUPERFAMILY SSF51445 841 1164 1.65E-61 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Gene3D G3DSA:2.60.120.200 449 642 1.6E-26 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Gene3D G3DSA:2.60.120.200 28 235 2.8E-32 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 287 444 5.6E-31 T 19-04-2016 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 495 639 1.6E-13 T 19-04-2016 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 81 234 3.1E-26 T 19-04-2016 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 1086 1265 3.2E-32 T 19-04-2016 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_4401 a6b88aa6294e1ec5e21a1c0923c56000 1274 SMART SM00813 1086 1265 8.3E-34 T 19-04-2016 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_4263 675ed1efdf10124c7b8671ef188250a6 347 SUPERFAMILY SSF53756 3 332 5.57E-67 T 19-04-2016 AMED_4263 675ed1efdf10124c7b8671ef188250a6 347 Gene3D G3DSA:3.40.50.2000 2 155 1.5E-16 T 19-04-2016 AMED_4263 675ed1efdf10124c7b8671ef188250a6 347 PANTHER PTHR30160:SF11 3 345 4.1E-62 T 19-04-2016 AMED_4263 675ed1efdf10124c7b8671ef188250a6 347 PANTHER PTHR30160 3 345 4.1E-62 T 19-04-2016 AMED_4263 675ed1efdf10124c7b8671ef188250a6 347 Gene3D G3DSA:3.40.50.2000 169 332 6.2E-49 T 19-04-2016 AMED_4263 675ed1efdf10124c7b8671ef188250a6 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 80 311 5.4E-24 T 19-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AMED_0096 439074523b135ad2962e03be3d005d14 215 Gene3D G3DSA:1.10.3720.10 10 202 2.8E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0096 439074523b135ad2962e03be3d005d14 215 SUPERFAMILY SSF161098 14 198 7.06E-28 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0096 439074523b135ad2962e03be3d005d14 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 205 4.7E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0096 439074523b135ad2962e03be3d005d14 215 PANTHER PTHR30177 1 214 2.3E-90 T 19-04-2016 AMED_0096 439074523b135ad2962e03be3d005d14 215 PANTHER PTHR30177:SF13 1 214 2.3E-90 T 19-04-2016 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 Gene3D G3DSA:3.40.50.2300 170 307 1.2E-53 T 19-04-2016 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 Gene3D G3DSA:1.10.260.40 1 56 7.7E-23 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 SMART SM00354 1 70 7.8E-22 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 Gene3D G3DSA:3.40.50.2300 57 169 4.1E-28 T 19-04-2016 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 PANTHER PTHR30146 1 330 1.3E-101 T 19-04-2016 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 45 1.4E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 SUPERFAMILY SSF47413 1 59 4.3E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 2 12 9.1E-6 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 9.1E-6 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 SUPERFAMILY SSF53822 60 327 4.89E-71 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4508 e2a14ed125742fe0e4188c05cc800875 330 Pfam PF13377 Periplasmic binding protein-like domain 165 326 6.3E-44 T 19-04-2016 AMED_4695 b837a6dce71d48aed8fa28d62a99dc36 197 Gene3D G3DSA:1.10.357.10 57 191 2.7E-16 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4695 b837a6dce71d48aed8fa28d62a99dc36 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 61 3.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4695 b837a6dce71d48aed8fa28d62a99dc36 197 Gene3D G3DSA:1.10.10.60 6 56 1.4E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4695 b837a6dce71d48aed8fa28d62a99dc36 197 SUPERFAMILY SSF46689 3 80 6.16E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4695 b837a6dce71d48aed8fa28d62a99dc36 197 PANTHER PTHR30055 8 196 3.6E-19 T 19-04-2016 AMED_4695 b837a6dce71d48aed8fa28d62a99dc36 197 SUPERFAMILY SSF48498 82 191 3.14E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2412 a8202ce646c04b5538acbaa95b599ea0 284 Gene3D G3DSA:2.70.70.10 26 149 2.1E-29 T 19-04-2016 AMED_2412 a8202ce646c04b5538acbaa95b599ea0 284 Pfam PF01551 Peptidase family M23 58 148 1.2E-23 T 19-04-2016 IPR016047 Peptidase M23 AMED_2412 a8202ce646c04b5538acbaa95b599ea0 284 SUPERFAMILY SSF51261 66 148 3.56E-29 T 19-04-2016 IPR011055 Duplicated hybrid motif AMED_2412 a8202ce646c04b5538acbaa95b599ea0 284 PANTHER PTHR21666 68 149 6.2E-24 T 19-04-2016 AMED_8686 448ba6d6781d8dd4864bc4b5d5b53472 477 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 151 347 3.5E-31 T 19-04-2016 IPR004299 Membrane bound O-acyl transferase, MBOAT AMED_8686 448ba6d6781d8dd4864bc4b5d5b53472 477 PIRSF PIRSF016636 1 477 1.6E-145 T 19-04-2016 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB AMED_8686 448ba6d6781d8dd4864bc4b5d5b53472 477 PIRSF PIRSF500217 1 477 1.6E-147 T 19-04-2016 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 AMED_8686 448ba6d6781d8dd4864bc4b5d5b53472 477 PANTHER PTHR13285 1 439 1.0E-90 T 19-04-2016 AMED_8686 448ba6d6781d8dd4864bc4b5d5b53472 477 PANTHER PTHR13285:SF23 1 439 1.0E-90 T 19-04-2016 AMED_2048 53079cb8c269e370ff865de1369e847f 321 Gene3D G3DSA:3.40.50.300 2 224 1.1E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2048 53079cb8c269e370ff865de1369e847f 321 Pfam PF00005 ABC transporter 20 163 2.1E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2048 53079cb8c269e370ff865de1369e847f 321 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_2048 53079cb8c269e370ff865de1369e847f 321 SUPERFAMILY SSF52540 5 224 2.56E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2048 53079cb8c269e370ff865de1369e847f 321 PANTHER PTHR24220 6 260 1.6E-99 T 19-04-2016 AMED_2048 53079cb8c269e370ff865de1369e847f 321 Pfam PF13732 Domain of unknown function (DUF4162) 217 305 2.2E-6 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_2048 53079cb8c269e370ff865de1369e847f 321 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 307 9.5E-106 T 19-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- AMED_2048 53079cb8c269e370ff865de1369e847f 321 SMART SM00382 29 212 5.1E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2048 53079cb8c269e370ff865de1369e847f 321 PANTHER PTHR24220:SF0 6 260 1.6E-99 T 19-04-2016 AMED_6418 90ab4cf42c80b99c4214b6635ca9827a 120 Gene3D G3DSA:3.30.70.1060 1 112 2.5E-39 T 19-04-2016 AMED_6418 90ab4cf42c80b99c4214b6635ca9827a 120 SUPERFAMILY SSF54909 3 112 1.34E-30 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_6418 90ab4cf42c80b99c4214b6635ca9827a 120 PANTHER PTHR35174 3 112 1.7E-25 T 19-04-2016 AMED_6418 90ab4cf42c80b99c4214b6635ca9827a 120 Pfam PF03795 YCII-related domain 4 112 3.2E-15 T 19-04-2016 IPR005545 YCII-related AMED_0588 59f9cf6bd395775b4c48bd1e4f7fcb09 146 SUPERFAMILY SSF54637 16 137 2.84E-27 T 19-04-2016 IPR029069 HotDog domain AMED_0588 59f9cf6bd395775b4c48bd1e4f7fcb09 146 Gene3D G3DSA:3.10.129.10 12 137 2.6E-36 T 19-04-2016 IPR029069 HotDog domain AMED_0588 59f9cf6bd395775b4c48bd1e4f7fcb09 146 Pfam PF01575 MaoC like domain 24 109 7.7E-24 T 19-04-2016 IPR002539 MaoC-like domain AMED_0588 59f9cf6bd395775b4c48bd1e4f7fcb09 146 PANTHER PTHR13078 14 102 5.3E-17 T 19-04-2016 AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SUPERFAMILY SSF51126 21 125 3.14E-21 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SUPERFAMILY SSF51126 370 613 3.14E-21 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SUPERFAMILY SSF51126 298 322 3.14E-21 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 Pfam PF13229 Right handed beta helix region 382 489 5.9E-5 T 19-04-2016 AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 465 486 470.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 503 530 220.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 402 424 2300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 537 559 4300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 563 601 2100.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 SMART SM00710 437 464 9000.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 PANTHER PTHR36453:SF1 34 350 1.2E-67 T 19-04-2016 AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 PANTHER PTHR36453:SF1 371 571 1.2E-67 T 19-04-2016 AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 Gene3D G3DSA:2.160.20.10 22 151 4.3E-29 T 19-04-2016 IPR012334 Pectin lyase fold AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 Gene3D G3DSA:2.160.20.10 392 637 4.3E-29 T 19-04-2016 IPR012334 Pectin lyase fold AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 PANTHER PTHR36453 34 350 1.2E-67 T 19-04-2016 AMED_5510 d45a5a5ecf183fef5db2a7036f39c48a 654 PANTHER PTHR36453 371 571 1.2E-67 T 19-04-2016 AMED_2843 eed105ca3522069e1ff03b2dcbc6918b 234 Gene3D G3DSA:3.40.50.150 1 199 8.3E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2843 eed105ca3522069e1ff03b2dcbc6918b 234 SUPERFAMILY SSF53335 3 213 2.13E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2843 eed105ca3522069e1ff03b2dcbc6918b 234 PANTHER PTHR10108 5 138 1.3E-29 T 19-04-2016 AMED_2843 eed105ca3522069e1ff03b2dcbc6918b 234 Pfam PF08241 Methyltransferase domain 43 135 2.1E-24 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_6866 6c6cd7114b8b404be0ddebd45897af73 353 Gene3D G3DSA:1.20.1290.10 13 169 1.9E-21 T 19-04-2016 IPR029032 AhpD-like AMED_6866 6c6cd7114b8b404be0ddebd45897af73 353 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 73 115 4.3E-10 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_6866 6c6cd7114b8b404be0ddebd45897af73 353 SUPERFAMILY SSF69118 13 173 1.7E-29 T 19-04-2016 IPR029032 AhpD-like AMED_6866 6c6cd7114b8b404be0ddebd45897af73 353 Pfam PF02627 Carboxymuconolactone decarboxylase family 56 108 8.5E-9 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 Gene3D G3DSA:3.40.50.10540 2 206 5.3E-99 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 Gene3D G3DSA:3.40.50.10540 292 377 5.3E-99 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 Gene3D G3DSA:3.30.1540.10 221 291 4.8E-8 T 19-04-2016 AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 SUPERFAMILY SSF89796 1 377 1.11E-115 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 Pfam PF02515 CoA-transferase family III 5 352 4.4E-80 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 PANTHER PTHR24023 25 368 5.4E-97 T 19-04-2016 AMED_3835 bdf62b9a0e4d5254521b656ca86eb98a 382 PANTHER PTHR24023:SF591 25 368 5.4E-97 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 SUPERFAMILY SSF52833 385 500 6.71E-8 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 SUPERFAMILY SSF51905 7 179 3.32E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 SUPERFAMILY SSF51905 268 354 3.32E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 Pfam PF01494 FAD binding domain 6 344 3.0E-83 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PANTHER PTHR13789:SF90 7 351 5.1E-96 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.50.50.60 269 347 3.7E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.50.50.60 7 70 3.7E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.50.50.60 102 184 3.7E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 Gene3D G3DSA:3.40.30.20 455 501 6.3E-6 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 313 331 5.9E-40 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 5.9E-40 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 331 347 5.9E-40 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 5.9E-40 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 5.9E-40 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 5.9E-40 T 19-04-2016 AMED_1440 848d7f622ff36cc3b7e8c6ff691c2652 514 PANTHER PTHR13789 7 351 5.1E-96 T 19-04-2016 AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 SUPERFAMILY SSF46785 3 59 1.77E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 SUPERFAMILY SSF55781 63 220 6.47E-37 T 19-04-2016 IPR029016 GAF domain-like AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 Pfam PF09339 IclR helix-turn-helix domain 2 43 1.8E-9 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 Gene3D G3DSA:1.10.10.10 2 53 1.7E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 SMART SM00346 1 79 1.4E-15 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 PANTHER PTHR30136:SF18 1 220 8.4E-107 T 19-04-2016 AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 Pfam PF01614 Bacterial transcriptional regulator 111 217 3.1E-17 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 Gene3D G3DSA:3.30.450.40 62 214 7.2E-42 T 19-04-2016 IPR029016 GAF domain-like AMED_1722 2ae4c9435a5dfe6785be44ce42f7e768 220 PANTHER PTHR30136 1 220 8.4E-107 T 19-04-2016 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 Hamap MF_00020 Acetate kinase [ackA]. 1 361 107.715 T 19-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 3 14 1.9E-23 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 262 275 1.9E-23 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 336 348 1.9E-23 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 284 300 1.9E-23 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PRINTS PR00471 Acetate kinase family signature 165 186 1.9E-23 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 Gene3D G3DSA:3.30.420.40 2 166 1.8E-11 T 19-04-2016 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 19-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 Pfam PF00871 Acetokinase family 41 348 5.3E-88 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PANTHER PTHR21060:SF11 39 361 2.4E-107 T 19-04-2016 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 SUPERFAMILY SSF53067 2 157 2.91E-40 T 19-04-2016 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 165 182 - T 19-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PANTHER PTHR21060 39 361 2.4E-107 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 SUPERFAMILY SSF53067 119 354 7.22E-65 T 19-04-2016 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 Gene3D G3DSA:3.30.420.40 167 352 1.2E-56 T 19-04-2016 AMED_5469 e11591f0c7a190f0450c97b6026da1d1 361 PIRSF PIRSF000722 22 358 3.9E-95 T 19-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 263 9.9E-50 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 SUPERFAMILY SSF52096 2 262 1.3E-76 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 Gene3D G3DSA:1.10.12.10 207 262 4.8E-10 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 PANTHER PTHR11941:SF95 1 262 2.8E-87 T 19-04-2016 AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 Gene3D G3DSA:3.90.226.10 3 204 7.4E-65 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2881 63a1e03326c204fa7b306b6098dd8745 279 PANTHER PTHR11941 1 262 2.8E-87 T 19-04-2016 AMED_5366 5395c42437a854e89d4b6a45dba67819 334 Gene3D G3DSA:3.40.50.720 39 117 3.0E-12 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5366 5395c42437a854e89d4b6a45dba67819 334 PANTHER PTHR10996 1 333 9.2E-138 T 19-04-2016 AMED_5366 5395c42437a854e89d4b6a45dba67819 334 Gene3D G3DSA:3.40.50.720 118 296 5.6E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5366 5395c42437a854e89d4b6a45dba67819 334 SUPERFAMILY SSF51735 108 295 2.96E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5366 5395c42437a854e89d4b6a45dba67819 334 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 234 250 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_5366 5395c42437a854e89d4b6a45dba67819 334 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 147 294 5.2E-43 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_5366 5395c42437a854e89d4b6a45dba67819 334 PANTHER PTHR10996:SF167 1 333 9.2E-138 T 19-04-2016 AMED_5366 5395c42437a854e89d4b6a45dba67819 334 SUPERFAMILY SSF52283 37 136 3.61E-12 T 19-04-2016 AMED_5366 5395c42437a854e89d4b6a45dba67819 334 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 40 325 1.8E-9 T 19-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AMED_8784 11e245ff75ba6f8e9b542f86a8cb975b 71 Pfam PF12728 Helix-turn-helix domain 10 57 1.2E-9 T 19-04-2016 AMED_8784 11e245ff75ba6f8e9b542f86a8cb975b 71 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 11 57 1.1E-8 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 SMART SM00947 564 734 7.4E-57 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 Pfam PF00484 Carbonic anhydrase 571 729 3.7E-44 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 Pfam PF00916 Sulfate permease family 23 371 9.7E-68 T 19-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 PANTHER PTHR11814 20 603 1.2E-172 T 19-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 PANTHER PTHR11814:SF123 20 603 1.2E-172 T 19-04-2016 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 SUPERFAMILY SSF53056 532 741 3.4E-53 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 Gene3D G3DSA:3.40.1050.10 533 741 2.3E-68 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2215 8b3721d69dbde6a5d9d69d93ad9cf78d 748 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 619 639 - T 19-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SMART SM01067 748 830 2.9E-22 T 19-04-2016 IPR001956 Bacterial type 3a cellulose-binding domain GO:0005975|GO:0030248 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SMART SM01067 499 577 3.8E-10 T 19-04-2016 IPR001956 Bacterial type 3a cellulose-binding domain GO:0005975|GO:0030248 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00759 Glycosyl hydrolase family 9 39 473 5.5E-138 T 19-04-2016 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:2.60.40.710 495 640 4.8E-29 T 19-04-2016 IPR001956 Bacterial type 3a cellulose-binding domain GO:0005975|GO:0030248 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00942 Cellulose binding domain 506 576 2.2E-11 T 19-04-2016 IPR001956 Bacterial type 3a cellulose-binding domain GO:0005975|GO:0030248 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00942 Cellulose binding domain 754 829 1.3E-19 T 19-04-2016 IPR001956 Bacterial type 3a cellulose-binding domain GO:0005975|GO:0030248 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF48208 35 489 3.74E-157 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SMART SM00060 652 725 6.2E-12 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF49384 751 891 4.13E-38 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:2.60.40.10 650 736 5.7E-22 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:2.60.40.710 753 891 6.8E-41 T 19-04-2016 IPR001956 Bacterial type 3a cellulose-binding domain GO:0005975|GO:0030248 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF49265 648 736 2.98E-16 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Pfam PF00041 Fibronectin type III domain 654 729 8.7E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 PANTHER PTHR22298 8 483 1.1E-197 T 19-04-2016 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 Gene3D G3DSA:1.50.10.10 36 478 4.0E-165 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 SUPERFAMILY SSF49384 506 642 1.05E-24 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3931 d14e6ee3038e04cda36394308dfd3228 891 ProSitePatterns PS00698 Glycosyl hydrolases family 9 active sites signature 2. 449 467 - T 19-04-2016 IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_3045 abf74e6cc4910687e58abe4fcf80a9d0 289 SUPERFAMILY SSF51569 27 283 2.42E-34 T 19-04-2016 AMED_3045 abf74e6cc4910687e58abe4fcf80a9d0 289 Gene3D G3DSA:3.20.20.70 26 285 2.8E-34 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 SUPERFAMILY SSF46689 214 265 3.29E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 SUPERFAMILY SSF52317 5 194 1.86E-41 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 Gene3D G3DSA:1.10.10.60 269 316 3.2E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 PANTHER PTHR11019 1 318 8.5E-101 T 19-04-2016 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 Gene3D G3DSA:3.40.50.880 5 221 1.9E-42 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 268 310 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 Pfam PF12833 Helix-turn-helix domain 237 315 2.2E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 SMART SM00342 231 314 5.2E-28 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 Gene3D G3DSA:1.10.10.60 222 268 4.9E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 Pfam PF01965 DJ-1/PfpI family 5 173 1.4E-14 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 SUPERFAMILY SSF46689 267 317 1.34E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2195 d9d23dd804a0a1f73ec0c33c93f53517 319 PANTHER PTHR11019:SF68 1 318 8.5E-101 T 19-04-2016 AMED_6354 d009b11185b4db14d37e5b5fc2fe6cfc 176 SUPERFAMILY SSF46689 5 70 1.5E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6354 d009b11185b4db14d37e5b5fc2fe6cfc 176 Gene3D G3DSA:1.10.357.10 7 172 1.0E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6354 d009b11185b4db14d37e5b5fc2fe6cfc 176 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 5.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4502 1ce13d606fef863815167258410cc297 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 4.6E-15 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4502 1ce13d606fef863815167258410cc297 253 SUPERFAMILY SSF46785 5 61 7.08E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4502 1ce13d606fef863815167258410cc297 253 Gene3D G3DSA:1.10.10.10 14 57 1.7E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4502 1ce13d606fef863815167258410cc297 253 PANTHER PTHR30363:SF1 1 253 6.2E-85 T 19-04-2016 AMED_4502 1ce13d606fef863815167258410cc297 253 SMART SM01134 73 234 1.2E-72 T 19-04-2016 AMED_4502 1ce13d606fef863815167258410cc297 253 Gene3D G3DSA:3.40.50.1360 75 215 1.1E-14 T 19-04-2016 AMED_4502 1ce13d606fef863815167258410cc297 253 SMART SM00420 6 58 6.0E-15 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4502 1ce13d606fef863815167258410cc297 253 PANTHER PTHR30363 1 253 6.2E-85 T 19-04-2016 AMED_4502 1ce13d606fef863815167258410cc297 253 SUPERFAMILY SSF100950 74 235 1.78E-31 T 19-04-2016 AMED_4502 1ce13d606fef863815167258410cc297 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.7E-7 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4502 1ce13d606fef863815167258410cc297 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.7E-7 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4502 1ce13d606fef863815167258410cc297 253 Pfam PF00455 DeoR C terminal sensor domain 75 233 1.2E-52 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 309 8.6E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 259 273 8.6E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 329 8.6E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PRINTS PR00344 Bacterial sensor protein C-terminal signature 277 287 8.6E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SMART SM00387 222 330 7.3E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SMART SM00304 61 113 8.5E-16 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SUPERFAMILY SSF47384 97 178 9.42E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SMART SM00388 114 178 1.2E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 223 329 1.3E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Gene3D G3DSA:1.10.287.130 106 163 9.7E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 PANTHER PTHR24423 55 330 2.2E-80 T 19-04-2016 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SUPERFAMILY SSF55874 167 330 4.98E-42 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Gene3D G3DSA:3.30.565.10 164 330 6.8E-42 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Pfam PF00672 HAMP domain 45 108 1.3E-17 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 Pfam PF00512 His Kinase A (phospho-acceptor) domain 115 178 5.9E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6641 28dc7c15af5f33e22cb93e21dd6f0c9f 330 SUPERFAMILY SSF158472 63 109 3.01E-12 T 19-04-2016 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:3.40.50.300 899 1098 8.5E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:3.40.50.300 333 533 8.4E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF90123 2 320 1.44E-46 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF90123 570 885 2.49E-35 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Pfam PF00664 ABC transporter transmembrane region 25 280 2.1E-17 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Pfam PF00005 ABC transporter 349 490 3.6E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Pfam PF00005 ABC transporter 917 1065 1.7E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 PANTHER PTHR24221 8 446 6.0E-107 T 19-04-2016 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 PANTHER PTHR24221 1014 1094 6.0E-107 T 19-04-2016 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 PANTHER PTHR24221:SF215 8 446 6.0E-107 T 19-04-2016 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 PANTHER PTHR24221:SF215 1014 1094 6.0E-107 T 19-04-2016 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 SMART SM00382 925 1110 3.1E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 SMART SM00382 358 535 1.7E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 16 533 1.7E-178 T 19-04-2016 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF52540 333 534 1.25E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 ProSitePatterns PS00211 ABC transporters family signature. 1037 1051 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 SUPERFAMILY SSF52540 896 1097 2.57E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 573 1095 1.2E-157 T 19-04-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:1.20.1560.10 6 314 2.7E-37 T 19-04-2016 AMED_5476 1bc4c8eded228d0fdec59c0814a3df82 1115 Gene3D G3DSA:1.20.1560.10 572 879 4.6E-27 T 19-04-2016 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:3.40.50.970 447 638 1.7E-51 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 525 544 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 PANTHER PTHR18968 91 637 1.6E-136 T 19-04-2016 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:3.40.50.970 109 283 1.3E-54 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 110 279 6.0E-46 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF52518 466 638 1.41E-49 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:2.102.10.10 3 106 1.6E-25 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF52518 108 285 1.52E-45 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 301 428 3.1E-33 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF50022 1 104 4.32E-23 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 489 632 6.2E-30 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Gene3D G3DSA:3.40.50.1220 295 446 4.7E-42 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 Pfam PF00355 Rieske [2Fe-2S] domain 9 76 9.4E-13 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_5087 dc0ac92ad45298b1eda0b3f12a11d34b 641 SUPERFAMILY SSF52467 294 459 1.33E-41 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 SUPERFAMILY SSF63737 35 229 4.45E-35 T 19-04-2016 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 Gene3D G3DSA:1.10.390.10 332 467 4.7E-21 T 19-04-2016 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 318 333 9.5E-14 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 213 228 9.5E-14 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 337 349 9.5E-14 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 165 180 9.5E-14 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 Pfam PF01433 Peptidase family M1 51 362 5.6E-40 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 SUPERFAMILY SSF55486 241 467 3.42E-47 T 19-04-2016 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PANTHER PTHR11533 38 465 4.5E-81 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_0511 5c44094ef8bee6423fbf35dcd0ec0ac7 506 PANTHER PTHR11533:SF163 38 465 4.5E-81 T 19-04-2016 AMED_2554 4896878757b4bf228eb95a535f9ae4e0 340 PANTHER PTHR30213 3 305 2.2E-45 T 19-04-2016 AMED_2554 4896878757b4bf228eb95a535f9ae4e0 340 Pfam PF03631 Virulence factor BrkB 40 287 3.2E-38 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_2554 4896878757b4bf228eb95a535f9ae4e0 340 PANTHER PTHR30213:SF1 3 305 2.2E-45 T 19-04-2016 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 Gene3D G3DSA:2.30.40.10 5 60 2.3E-9 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 SUPERFAMILY SSF51338 434 451 8.64E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 SUPERFAMILY SSF51338 10 51 8.64E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 PANTHER PTHR22642:SF2 40 422 1.3E-32 T 19-04-2016 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 Gene3D G3DSA:3.20.20.140 186 397 6.6E-15 T 19-04-2016 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 SUPERFAMILY SSF51556 50 111 3.56E-15 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 SUPERFAMILY SSF51556 179 399 3.56E-15 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 Pfam PF07969 Amidohydrolase family 40 473 2.5E-31 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_7203 11a1f458f9dddea9dfb267d9646dc091 476 PANTHER PTHR22642 40 422 1.3E-32 T 19-04-2016 AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PANTHER PTHR24322 17 140 2.9E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 247 2.5E-59 T 19-04-2016 AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PANTHER PTHR24322:SF513 17 140 2.9E-39 T 19-04-2016 AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 Gene3D G3DSA:3.40.50.720 9 248 1.7E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PANTHER PTHR24322:SF513 156 192 2.9E-39 T 19-04-2016 AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 SUPERFAMILY SSF51735 12 248 1.05E-74 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PANTHER PTHR24322 156 192 2.9E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 9.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 9.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 9.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 9.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 9.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 9.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 3.9E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 3.9E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7462 8041b48badc1843cdbe750eb4a7d2310 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.9E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8533 81cf005570488dcf05e0ccbaace290ef 339 Pfam PF09084 NMT1/THI5 like 64 274 8.3E-29 T 19-04-2016 IPR015168 SsuA/THI5-like AMED_8533 81cf005570488dcf05e0ccbaace290ef 339 PANTHER PTHR30024 4 295 1.9E-36 T 19-04-2016 AMED_8533 81cf005570488dcf05e0ccbaace290ef 339 SMART SM00062 54 289 0.005 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_8533 81cf005570488dcf05e0ccbaace290ef 339 SUPERFAMILY SSF53850 52 270 7.1E-39 T 19-04-2016 AMED_8533 81cf005570488dcf05e0ccbaace290ef 339 Gene3D G3DSA:3.40.190.10 139 263 4.9E-23 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 Gene3D G3DSA:1.20.58.340 127 240 1.6E-33 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 Gene3D G3DSA:3.30.460.20 2 126 9.7E-30 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 PANTHER PTHR21535 28 318 1.4E-46 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 PANTHER PTHR21535:SF33 28 318 1.4E-46 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 SUPERFAMILY SSF143865 4 253 1.14E-63 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 Gene3D G3DSA:1.20.58.340 244 318 6.5E-19 T 19-04-2016 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 Pfam PF01544 CorA-like Mg2+ transporter protein 26 314 3.7E-62 T 19-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMED_4525 adae982a38b5c813618d7c02e25c702b 318 SUPERFAMILY SSF144083 254 315 3.66E-14 T 19-04-2016 AMED_5312 8208853510b5fa4bff6e53f285a55c09 97 SUPERFAMILY SSF47336 14 86 3.8E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5312 8208853510b5fa4bff6e53f285a55c09 97 Gene3D G3DSA:1.10.1200.10 12 91 1.5E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5312 8208853510b5fa4bff6e53f285a55c09 97 Pfam PF00550 Phosphopantetheine attachment site 23 85 3.8E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5312 8208853510b5fa4bff6e53f285a55c09 97 SMART SM00823 Phosphopantetheine attachment site 20 89 6.5E-8 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 388 1.2E-111 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 Gene3D G3DSA:3.40.47.10 155 189 2.3E-54 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 Gene3D G3DSA:3.40.47.10 275 388 2.3E-54 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 PANTHER PTHR18919 1 388 5.4E-125 T 19-04-2016 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 Pfam PF00108 Thiolase, N-terminal domain 5 259 4.6E-50 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 Pfam PF02803 Thiolase, C-terminal domain 268 389 5.4E-42 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 Gene3D G3DSA:3.40.47.10 190 274 1.1E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 Gene3D G3DSA:3.40.47.10 3 121 1.1E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 SUPERFAMILY SSF53901 269 388 4.19E-40 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 SUPERFAMILY SSF53901 1 265 1.51E-55 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 19-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AMED_7200 528ca3a152fdbbce59174b892be9a74f 390 PIRSF PIRSF000429 1 390 7.3E-107 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_1322 6812390491fa1907c70e4dff0cf46869 703 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 21 121 1.6E-11 T 19-04-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV AMED_1322 6812390491fa1907c70e4dff0cf46869 703 SUPERFAMILY SSF53649 277 323 6.25E-15 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_1322 6812390491fa1907c70e4dff0cf46869 703 SUPERFAMILY SSF53649 155 235 6.25E-15 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_1322 6812390491fa1907c70e4dff0cf46869 703 SUPERFAMILY SSF53649 355 437 6.25E-15 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_1322 6812390491fa1907c70e4dff0cf46869 703 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 157 440 6.2E-7 T 19-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 AMED_1322 6812390491fa1907c70e4dff0cf46869 703 Gene3D G3DSA:3.40.720.10 148 238 5.1E-9 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_1322 6812390491fa1907c70e4dff0cf46869 703 Gene3D G3DSA:3.40.720.10 371 435 1.9E-5 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 SUPERFAMILY SSF50370 33 152 5.15E-39 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 Gene3D G3DSA:3.20.20.80 222 425 6.9E-11 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 Gene3D G3DSA:2.80.10.50 27 153 2.4E-41 T 19-04-2016 AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 PANTHER PTHR11675 36 152 3.7E-31 T 19-04-2016 AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 SMART SM00458 29 153 1.8E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 PANTHER PTHR11675:SF55 36 152 3.7E-31 T 19-04-2016 AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 SUPERFAMILY SSF51445 170 426 5.04E-18 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8380 85ebc96bd119269247f1e4d3721baa0a 454 Pfam PF00652 Ricin-type beta-trefoil lectin domain 29 150 1.5E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1155 09294860af4854059f9a89264693cebe 312 SUPERFAMILY SSF160964 10 72 3.66E-6 T 19-04-2016 AMED_1155 09294860af4854059f9a89264693cebe 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 296 2.8E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1155 09294860af4854059f9a89264693cebe 312 SUPERFAMILY SSF161098 55 297 3.92E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1155 09294860af4854059f9a89264693cebe 312 PANTHER PTHR30193 2 312 1.2E-79 T 19-04-2016 AMED_1155 09294860af4854059f9a89264693cebe 312 Gene3D G3DSA:1.10.3720.10 6 298 2.6E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1155 09294860af4854059f9a89264693cebe 312 PANTHER PTHR30193:SF6 2 312 1.2E-79 T 19-04-2016 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 10 259 1.1E-89 T 19-04-2016 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15|UniPathway: UPA00031 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 SUPERFAMILY SSF56655 6 259 1.57E-72 T 19-04-2016 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PANTHER PTHR20854:SF38 1 261 3.6E-84 T 19-04-2016 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 1.7E-23 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 211 235 1.7E-23 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 136 159 1.7E-23 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 1.7E-23 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 1.7E-23 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 Gene3D G3DSA:3.30.540.10 6 155 1.2E-46 T 19-04-2016 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 19-04-2016 IPR020583 Inositol monophosphatase, metal-binding site AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 PANTHER PTHR20854 1 261 3.6E-84 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 Pfam PF00459 Inositol monophosphatase family 10 253 3.0E-49 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 214 228 - T 19-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMED_0979 669e8d4373c2f44345f5e20816b0ee6c 261 Gene3D G3DSA:3.40.190.80 156 260 1.9E-21 T 19-04-2016 AMED_1315 ed68c4595a936e1b7f3057d3bf6de24e 187 PANTHER PTHR30055 2 185 5.4E-21 T 19-04-2016 AMED_1315 ed68c4595a936e1b7f3057d3bf6de24e 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 50 1.4E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1315 ed68c4595a936e1b7f3057d3bf6de24e 187 Pfam PF13305 WHG domain 81 162 1.2E-10 T 19-04-2016 IPR025996 WHG domain AMED_1315 ed68c4595a936e1b7f3057d3bf6de24e 187 SUPERFAMILY SSF48498 79 164 4.77E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1315 ed68c4595a936e1b7f3057d3bf6de24e 187 SUPERFAMILY SSF46689 2 71 5.99E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1315 ed68c4595a936e1b7f3057d3bf6de24e 187 Gene3D G3DSA:1.10.357.10 2 184 1.5E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 Pfam PF00579 tRNA synthetases class I (W and Y) 32 327 5.5E-77 T 19-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 53 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 Gene3D G3DSA:1.10.240.10 236 320 7.8E-39 T 19-04-2016 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 3 424 43.055 T 19-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 Gene3D G3DSA:3.40.50.620 3 235 1.3E-87 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 PANTHER PTHR11766:SF0 5 419 5.6E-184 T 19-04-2016 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 4 422 1.4E-107 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 SUPERFAMILY SSF52374 4 327 5.38E-94 T 19-04-2016 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 PANTHER PTHR11766 5 419 5.6E-184 T 19-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 Gene3D G3DSA:3.10.290.10 321 424 7.0E-29 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 SUPERFAMILY SSF55174 330 422 1.26E-13 T 19-04-2016 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 186 208 3.8E-27 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 47 69 3.8E-27 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 219 231 3.8E-27 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMED_6032 e7676883dcde7ef9c8374ad83f13afdd 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 165 180 3.8E-27 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 Pfam PF00348 Polyprenyl synthetase 57 313 1.7E-45 T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 101 115 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 PANTHER PTHR12001:SF45 137 367 1.2E-75 T 19-04-2016 AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 PANTHER PTHR12001:SF45 63 120 1.2E-75 T 19-04-2016 AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 PANTHER PTHR12001 137 367 1.2E-75 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 PANTHER PTHR12001 63 120 1.2E-75 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 245 257 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 SUPERFAMILY SSF48576 51 366 2.52E-68 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_4076 ae0f57887bc0f1e5d85190f148b58650 367 Gene3D G3DSA:1.10.600.10 30 366 6.0E-74 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 Pfam PF09339 IclR helix-turn-helix domain 13 64 2.4E-17 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 SMART SM00346 11 99 6.4E-29 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 SUPERFAMILY SSF46785 11 83 1.04E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 PANTHER PTHR30136:SF10 8 266 1.3E-75 T 19-04-2016 AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 Pfam PF01614 Bacterial transcriptional regulator 130 250 5.0E-23 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 Gene3D G3DSA:3.30.450.40 78 254 1.4E-49 T 19-04-2016 IPR029016 GAF domain-like AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 Gene3D G3DSA:1.10.10.10 6 70 1.8E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 SMART SM00419 27 71 0.0045 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 SUPERFAMILY SSF55781 76 253 5.17E-45 T 19-04-2016 IPR029016 GAF domain-like AMED_4851 605ebc6b63c5f13973aeac29c97737b6 269 PANTHER PTHR30136 8 266 1.3E-75 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712:SF234 784 1544 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712:SF234 2254 2261 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712:SF234 1560 1634 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712:SF234 222 765 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51412 18 219 1.1E-15 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 908 1025 1.0E-36 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:1.10.1200.10 1701 1774 1.3E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:1.10.1200.10 1617 1689 1.2E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51412 274 532 2.2E-15 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1175 1487 6.1E-28 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.47.10 913 1076 1.3E-50 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.50.720 2003 2043 3.7E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.50.720 2085 2252 3.7E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51735 2003 2045 6.9E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51735 2082 2275 6.9E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF51735 1827 1974 9.85E-8 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2004 2223 1.2E-28 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712 784 1544 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712 2254 2261 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712 1560 1634 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 PANTHER PTHR11712 222 765 0.0 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF47336 1615 1699 7.92E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF53901 1054 1067 1.27E-76 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF53901 635 753 1.27E-76 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF53901 796 1021 1.27E-76 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.47.10 638 912 3.7E-75 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF52151 1172 1300 3.66E-50 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF52151 1368 1469 3.66E-50 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.30.70.250 1301 1363 5.3E-11 T 19-04-2016 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.20.20.70 93 181 6.4E-6 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.366.10 1170 1294 9.6E-49 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Gene3D G3DSA:3.40.366.10 1366 1472 9.6E-49 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SMART SM00825 Beta-ketoacyl synthase 638 1078 4.5E-116 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF55048 1302 1366 1.23E-11 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF08659 KR domain 2005 2221 1.4E-35 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00698 Acyl transferase domain 1175 1493 3.7E-36 T 19-04-2016 IPR014043 Acyl transferase AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 SUPERFAMILY SSF47336 1701 1779 4.61E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 637 900 5.8E-70 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF03060 Nitronate monooxygenase 98 199 5.1E-8 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF03060 Nitronate monooxygenase 273 596 2.4E-12 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00550 Phosphopantetheine attachment site 1705 1773 7.7E-5 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4604 f266f0414c6732b427f66b2407eea9fe 2276 Pfam PF00550 Phosphopantetheine attachment site 1621 1688 1.9E-4 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 Gene3D G3DSA:3.20.20.140 70 380 7.3E-69 T 19-04-2016 AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 Gene3D G3DSA:3.20.20.140 12 36 7.3E-69 T 19-04-2016 AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 SUPERFAMILY SSF51556 83 379 2.23E-73 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 SUPERFAMILY SSF51556 7 36 2.23E-73 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 PANTHER PTHR21240 83 379 7.3E-15 T 19-04-2016 AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 Pfam PF04909 Amidohydrolase 82 379 1.0E-27 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_7179 bbce3656d936a5fe9970d6aad9a82009 382 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 188 197 - T 19-04-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 AMED_3671 ce009ce84df6ae5c7f0b97179373980f 287 Gene3D G3DSA:1.10.10.10 218 282 2.2E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3671 ce009ce84df6ae5c7f0b97179373980f 287 SUPERFAMILY SSF46785 213 283 4.07E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 Gene3D G3DSA:3.40.50.150 125 264 4.9E-62 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 Gene3D G3DSA:3.40.50.150 4 92 4.9E-62 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 66 86 3.9E-26 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 245 265 3.9E-26 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 203 220 3.9E-26 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 28 42 3.9E-26 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 222 240 3.9E-26 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 SUPERFAMILY SSF53335 122 265 7.88E-53 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 SUPERFAMILY SSF53335 4 89 7.88E-53 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 33 38 - T 19-04-2016 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 Pfam PF01555 DNA methylase 29 259 2.8E-41 T 19-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PANTHER PTHR13370 13 265 7.3E-23 T 19-04-2016 AMED_7087 2346f2b1b89e21d2bdf8a4a7823cdc89 268 PANTHER PTHR13370:SF4 13 265 7.3E-23 T 19-04-2016 AMED_3404 f20c23c87088a5983e9d6282883e98b9 52 Gene3D G3DSA:1.10.1220.10 4 47 1.3E-4 T 19-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMED_3404 f20c23c87088a5983e9d6282883e98b9 52 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 45 2.0E-5 T 19-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AMED_3404 f20c23c87088a5983e9d6282883e98b9 52 SUPERFAMILY SSF47598 4 48 3.06E-7 T 19-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 AMED_8720 aaf1a8d831fb8bf56e06ebb613828035 269 PANTHER PTHR30294 9 267 1.9E-78 T 19-04-2016 AMED_8720 aaf1a8d831fb8bf56e06ebb613828035 269 PANTHER PTHR30294:SF24 9 267 1.9E-78 T 19-04-2016 AMED_8720 aaf1a8d831fb8bf56e06ebb613828035 269 Pfam PF01061 ABC-2 type transporter 25 233 1.1E-32 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_8720 aaf1a8d831fb8bf56e06ebb613828035 269 PIRSF PIRSF006648 2 269 2.5E-79 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_1534 16a6568c0d408eb409637573c98c7686 384 Pfam PF00480 ROK family 82 367 3.7E-46 T 19-04-2016 IPR000600 ROK family AMED_1534 16a6568c0d408eb409637573c98c7686 384 ProSitePatterns PS01125 ROK family signature. 205 232 - T 19-04-2016 IPR000600 ROK family AMED_1534 16a6568c0d408eb409637573c98c7686 384 SUPERFAMILY SSF53067 75 369 1.4E-48 T 19-04-2016 AMED_1534 16a6568c0d408eb409637573c98c7686 384 PANTHER PTHR18964:SF108 51 370 2.9E-71 T 19-04-2016 AMED_1534 16a6568c0d408eb409637573c98c7686 384 SUPERFAMILY SSF46785 9 68 3.75E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1534 16a6568c0d408eb409637573c98c7686 384 Gene3D G3DSA:3.30.420.40 71 211 7.5E-44 T 19-04-2016 AMED_1534 16a6568c0d408eb409637573c98c7686 384 Gene3D G3DSA:3.30.420.40 212 349 1.5E-34 T 19-04-2016 AMED_1534 16a6568c0d408eb409637573c98c7686 384 PANTHER PTHR18964 51 370 2.9E-71 T 19-04-2016 AMED_1534 16a6568c0d408eb409637573c98c7686 384 Gene3D G3DSA:1.10.10.10 9 67 1.2E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 Gene3D G3DSA:3.40.50.720 152 245 4.1E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 SUPERFAMILY SSF51735 118 267 2.93E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 Gene3D G3DSA:3.90.180.10 1 151 2.4E-45 T 19-04-2016 IPR011032 GroES-like AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 SUPERFAMILY SSF50129 1 151 2.99E-37 T 19-04-2016 IPR011032 GroES-like AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 SMART SM00829 11 331 2.9E-37 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 92 1.9E-9 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 Pfam PF13602 Zinc-binding dehydrogenase 188 331 2.0E-35 T 19-04-2016 AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 PANTHER PTHR11695:SF294 16 243 3.1E-99 T 19-04-2016 AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 PANTHER PTHR11695:SF294 261 337 3.1E-99 T 19-04-2016 AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 PANTHER PTHR11695 16 243 3.1E-99 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6421 fc38f3bb4d4efe20c93c36051284cd86 339 PANTHER PTHR11695 261 337 3.1E-99 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Gene3D G3DSA:3.20.20.450 614 863 1.1E-92 T 19-04-2016 IPR001633 EAL domain AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Gene3D G3DSA:3.30.450.40 361 442 3.8E-10 T 19-04-2016 IPR029016 GAF domain-like AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SMART SM00267 432 601 2.4E-21 T 19-04-2016 IPR000160 GGDEF domain AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SUPERFAMILY SSF55781 305 441 1.22E-11 T 19-04-2016 IPR029016 GAF domain-like AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 PANTHER PTHR33121 34 40 6.4E-66 T 19-04-2016 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 PANTHER PTHR33121 566 867 6.4E-66 T 19-04-2016 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Pfam PF00563 EAL domain 618 851 5.9E-69 T 19-04-2016 IPR001633 EAL domain AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 440 594 7.9E-14 T 19-04-2016 IPR000160 GGDEF domain AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SUPERFAMILY SSF55073 448 594 2.04E-23 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 PANTHER PTHR33121:SF13 34 40 6.4E-66 T 19-04-2016 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 PANTHER PTHR33121:SF13 566 867 6.4E-66 T 19-04-2016 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Gene3D G3DSA:3.30.70.270 444 605 3.8E-27 T 19-04-2016 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Pfam PF01590 GAF domain 353 429 1.5E-5 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SUPERFAMILY SSF141868 618 864 3.4E-83 T 19-04-2016 IPR001633 EAL domain AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 Pfam PF00990 Diguanylate cyclase, GGDEF domain 443 593 3.6E-17 T 19-04-2016 IPR000160 GGDEF domain AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SMART SM00065 300 440 2.9E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_0585 a0493b664ee8b0ebeaea6cfb37ff74a2 881 SMART SM00052 611 856 1.6E-107 T 19-04-2016 IPR001633 EAL domain AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 SUPERFAMILY SSF48264 17 398 2.1E-84 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 340 349 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 Gene3D G3DSA:1.10.630.10 16 398 5.4E-112 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PANTHER PTHR11712 86 398 1.0E-87 T 19-04-2016 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 270 281 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 316 331 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 139 155 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 92 103 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 156 171 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 193 215 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 288 315 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 338 347 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00359 B-class P450 signature 347 358 4.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 Pfam PF00067 Cytochrome P450 270 367 1.9E-14 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 338 347 3.6E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 347 358 3.6E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 238 255 3.6E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1331 8d57d8dac61d13eb2123868f78baf972 399 PRINTS PR00385 P450 superfamily signature 270 281 3.6E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 SUPERFAMILY SSF88946 5 87 2.71E-11 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 Gene3D G3DSA:1.10.1740.10 3 73 1.4E-11 T 19-04-2016 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 156 1.4E-46 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 Pfam PF04542 Sigma-70 region 2 13 75 3.9E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 PANTHER PTHR30173 5 163 2.8E-28 T 19-04-2016 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 Gene3D G3DSA:1.10.10.10 95 156 1.9E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 Pfam PF08281 Sigma-70, region 4 99 148 5.6E-16 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 SUPERFAMILY SSF88659 93 155 1.31E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 154 1.9E-21 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1635 ef00c2136b8ba7c2af90d69b0a6444f5 163 PANTHER PTHR30173:SF24 5 163 2.8E-28 T 19-04-2016 AMED_7889 9cc6d5265fa05eecc58f3f63795e68ed 355 Pfam PF07730 Histidine kinase 168 231 1.4E-18 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_7889 9cc6d5265fa05eecc58f3f63795e68ed 355 PANTHER PTHR24421:SF26 36 355 2.8E-82 T 19-04-2016 AMED_7889 9cc6d5265fa05eecc58f3f63795e68ed 355 PANTHER PTHR24421 36 355 2.8E-82 T 19-04-2016 AMED_7889 9cc6d5265fa05eecc58f3f63795e68ed 355 SUPERFAMILY SSF55874 249 353 4.37E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7889 9cc6d5265fa05eecc58f3f63795e68ed 355 Gene3D G3DSA:3.30.565.10 273 354 1.0E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 TIGRFAM TIGR03178 allantoinase: allantoinase 2 432 1.1E-169 T 19-04-2016 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698|UniPathway: UPA00395 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 SUPERFAMILY SSF51556 55 373 8.67E-96 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 Gene3D G3DSA:2.30.40.10 2 68 1.1E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 PANTHER PTHR11647:SF4 1 427 6.4E-212 T 19-04-2016 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 SUPERFAMILY SSF51338 1 53 6.56E-20 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 SUPERFAMILY SSF51338 373 430 6.56E-20 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 Gene3D G3DSA:3.20.20.140 69 393 1.3E-126 T 19-04-2016 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 PANTHER PTHR11647 1 427 6.4E-212 T 19-04-2016 AMED_1930 bf541a31f1b38bc416d00d25badca8ad 442 Pfam PF01979 Amidohydrolase family 51 395 7.1E-32 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 SUPERFAMILY SSF46689 190 234 2.06E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 219 235 3.17E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 204 219 3.17E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 190 231 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 SUPERFAMILY SSF51182 3 158 4.84E-16 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 PANTHER PTHR11019 7 237 2.9E-54 T 19-04-2016 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 Pfam PF12833 Helix-turn-helix domain 162 235 1.3E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 PANTHER PTHR11019:SF99 7 237 2.9E-54 T 19-04-2016 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 SMART SM00342 153 235 1.2E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 Gene3D G3DSA:1.10.10.60 132 191 5.4E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 Gene3D G3DSA:1.10.10.60 192 234 1.6E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 Pfam PF02311 AraC-like ligand binding domain 14 74 2.0E-4 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_8261 3cda6b66aea74896c3034f53bc58c124 237 Gene3D G3DSA:2.60.120.10 4 68 2.9E-9 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_7974 05aac3fbd3dd791f86fa7a482a9b7027 106 TIGRFAM TIGR03988 antisig_RsrA: mycothiol system anti-sigma-R factor 13 88 3.0E-28 T 19-04-2016 IPR024020 Anti sigma-R factor, mycothiol system,RsrA AMED_7974 05aac3fbd3dd791f86fa7a482a9b7027 106 Pfam PF13490 Putative zinc-finger 14 47 1.3E-7 T 19-04-2016 IPR027383 Putative zinc-finger AMED_7974 05aac3fbd3dd791f86fa7a482a9b7027 106 TIGRFAM TIGR02949 anti_SigH_actin: anti-sigma factor, TIGR02949 family 7 87 1.4E-25 T 19-04-2016 IPR014295 Anti-sigma factor AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 353 8.8E-154 T 19-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 235 251 - T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 Gene3D G3DSA:3.30.160.20 220 296 1.8E-34 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 SUPERFAMILY SSF75620 20 355 1.7E-121 T 19-04-2016 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 PANTHER PTHR11075 1 357 4.0E-140 T 19-04-2016 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 PANTHER PTHR11075:SF6 1 357 4.0E-140 T 19-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 Pfam PF00472 RF-1 domain 221 326 1.6E-36 T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 Pfam PF03462 PCRF domain 21 210 1.1E-54 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 SMART SM00937 75 185 1.5E-47 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 Gene3D G3DSA:1.20.58.410 2 106 7.9E-31 T 19-04-2016 AMED_1250 e7885dfcda87e075b6fd2951ef96daf3 357 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 354 37.484 T 19-04-2016 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 AMED_3202 8b5afc5beb1ee5e83b6f8758eaa82e8f 337 Gene3D G3DSA:1.20.1630.10 41 274 9.8E-6 T 19-04-2016 AMED_3202 8b5afc5beb1ee5e83b6f8758eaa82e8f 337 Pfam PF03916 Polysulphide reductase, NrfD 52 216 9.7E-18 T 19-04-2016 IPR005614 NrfD family AMED_0786 a5560d9c6d7a108abd53633312a95a43 67 Gene3D G3DSA:3.40.50.720 2 41 7.1E-7 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0786 a5560d9c6d7a108abd53633312a95a43 67 SUPERFAMILY SSF51735 4 47 2.62E-7 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 PANTHER PTHR24096:SF232 59 544 1.5E-145 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Pfam PF00501 AMP-binding enzyme 59 453 8.3E-63 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 SUPERFAMILY SSF56801 57 543 3.01E-118 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 PANTHER PTHR24096 59 544 1.5E-145 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:2.30.38.10 374 443 1.1E-8 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:3.30.300.30 450 544 1.1E-31 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:3.40.50.980 221 373 2.7E-37 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:3.40.50.980 58 162 1.0E-20 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Gene3D G3DSA:3.40.50.980 195 220 1.0E-20 T 19-04-2016 AMED_6982 5ceb56fcd29c60ef2d27834d2bbae7cf 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 462 537 3.0E-20 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_1469 62c026e6553578126900e5274d303442 720 PANTHER PTHR10066 314 720 4.9E-100 T 19-04-2016 AMED_1469 62c026e6553578126900e5274d303442 720 SUPERFAMILY SSF51126 542 689 4.87E-6 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_1469 62c026e6553578126900e5274d303442 720 SUPERFAMILY SSF51126 431 494 4.87E-6 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_1469 62c026e6553578126900e5274d303442 720 SUPERFAMILY SSF50370 25 165 7.54E-37 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1469 62c026e6553578126900e5274d303442 720 Pfam PF00652 Ricin-type beta-trefoil lectin domain 31 161 1.2E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1469 62c026e6553578126900e5274d303442 720 PANTHER PTHR10066:SF12 314 720 4.9E-100 T 19-04-2016 AMED_1469 62c026e6553578126900e5274d303442 720 SMART SM00458 28 164 1.3E-13 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1469 62c026e6553578126900e5274d303442 720 Gene3D G3DSA:2.80.10.50 29 164 1.4E-32 T 19-04-2016 AMED_1446 edef153ffbf0d2ad182c9fdc32be3576 169 Gene3D G3DSA:1.10.357.10 8 167 1.6E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1446 edef153ffbf0d2ad182c9fdc32be3576 169 SUPERFAMILY SSF48498 65 165 8.53E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1446 edef153ffbf0d2ad182c9fdc32be3576 169 SUPERFAMILY SSF46689 7 62 2.29E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1446 edef153ffbf0d2ad182c9fdc32be3576 169 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 45 3.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1446 edef153ffbf0d2ad182c9fdc32be3576 169 PANTHER PTHR30055 15 163 3.3E-31 T 19-04-2016 AMED_1446 edef153ffbf0d2ad182c9fdc32be3576 169 PANTHER PTHR30055:SF19 15 163 3.3E-31 T 19-04-2016 AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 Gene3D G3DSA:3.40.50.720 9 175 8.7E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 PANTHER PTHR10366:SF186 9 326 1.4E-99 T 19-04-2016 AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 Gene3D G3DSA:3.90.25.10 176 323 6.3E-43 T 19-04-2016 AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 253 1.0E-54 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 SUPERFAMILY SSF51735 10 322 4.16E-87 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 PANTHER PTHR10366 9 326 1.4E-99 T 19-04-2016 AMED_2414 7858099744f2b78428f693c7e7eb71d3 326 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 9 324 1.7E-112 T 19-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 AMED_1114 2422486bbd2ccbf9c1aad101f6fca66e 305 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 11 285 1.8E-104 T 19-04-2016 IPR025859 P-aminobenzoate N-oxygenase AurF AMED_1114 2422486bbd2ccbf9c1aad101f6fca66e 305 SUPERFAMILY SSF47240 96 245 1.48E-9 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_1529 04ebe04b032ef66062d9529b81873f06 523 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 47 145 3.6E-31 T 19-04-2016 IPR032093 Phospholipase D, N-terminal AMED_1529 04ebe04b032ef66062d9529b81873f06 523 Pfam PF09423 PhoD-like phosphatase 160 489 1.2E-96 T 19-04-2016 IPR018946 Alkaline phosphatase D-related AMED_1529 04ebe04b032ef66062d9529b81873f06 523 SUPERFAMILY SSF56300 462 496 2.87E-27 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1529 04ebe04b032ef66062d9529b81873f06 523 SUPERFAMILY SSF56300 155 427 2.87E-27 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1529 04ebe04b032ef66062d9529b81873f06 523 PANTHER PTHR22953 44 197 1.4E-97 T 19-04-2016 AMED_1529 04ebe04b032ef66062d9529b81873f06 523 PANTHER PTHR22953 342 375 1.4E-97 T 19-04-2016 AMED_1529 04ebe04b032ef66062d9529b81873f06 523 PANTHER PTHR22953 220 319 1.4E-97 T 19-04-2016 AMED_1529 04ebe04b032ef66062d9529b81873f06 523 Gene3D G3DSA:3.60.21.10 166 499 1.0E-12 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1529 04ebe04b032ef66062d9529b81873f06 523 PANTHER PTHR22953:SF28 44 197 1.4E-97 T 19-04-2016 AMED_1529 04ebe04b032ef66062d9529b81873f06 523 PANTHER PTHR22953:SF28 342 375 1.4E-97 T 19-04-2016 AMED_1529 04ebe04b032ef66062d9529b81873f06 523 PANTHER PTHR22953:SF28 220 319 1.4E-97 T 19-04-2016 AMED_0683 26e19a08090438d88ef10b892143d308 279 Gene3D G3DSA:3.30.1140.32 107 206 6.4E-41 T 19-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0683 26e19a08090438d88ef10b892143d308 279 Gene3D G3DSA:3.30.300.20 17 106 4.1E-33 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_0683 26e19a08090438d88ef10b892143d308 279 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 19-04-2016 IPR018280 Ribosomal protein S3, conserved site AMED_0683 26e19a08090438d88ef10b892143d308 279 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 1.5E-92 T 19-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMED_0683 26e19a08090438d88ef10b892143d308 279 Pfam PF07650 KH domain 37 109 2.3E-19 T 19-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 AMED_0683 26e19a08090438d88ef10b892143d308 279 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 202 4.1E-35 T 19-04-2016 AMED_0683 26e19a08090438d88ef10b892143d308 279 SMART SM00322 59 124 4.0E-8 T 19-04-2016 IPR004087 K Homology domain GO:0003676 AMED_0683 26e19a08090438d88ef10b892143d308 279 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 37.738 T 19-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMED_0683 26e19a08090438d88ef10b892143d308 279 PANTHER PTHR11760 2 242 2.5E-125 T 19-04-2016 AMED_0683 26e19a08090438d88ef10b892143d308 279 SUPERFAMILY SSF54814 2 105 1.23E-36 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMED_0683 26e19a08090438d88ef10b892143d308 279 PANTHER PTHR11760:SF19 2 242 2.5E-125 T 19-04-2016 AMED_0683 26e19a08090438d88ef10b892143d308 279 SUPERFAMILY SSF54821 106 206 1.09E-35 T 19-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 SUPERFAMILY SSF56601 279 626 8.45E-87 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 Gene3D G3DSA:3.40.710.10 286 622 2.8E-84 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 Pfam PF03717 Penicillin-binding Protein dimerisation domain 84 252 4.9E-10 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 Gene3D G3DSA:3.90.1310.10 174 285 3.1E-22 T 19-04-2016 AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 Pfam PF00905 Penicillin binding protein transpeptidase domain 305 616 3.7E-79 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 SUPERFAMILY SSF56519 81 278 4.19E-27 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 PANTHER PTHR30627:SF1 25 642 1.9E-160 T 19-04-2016 AMED_6258 970577e2292efa2c01e50a0527bb13f8 642 PANTHER PTHR30627 25 642 1.9E-160 T 19-04-2016 AMED_1207 9fd3308c2b63052659b30732fccb8448 308 Pfam PF02673 Bacitracin resistance protein BacA 9 300 3.1E-63 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_1207 9fd3308c2b63052659b30732fccb8448 308 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 306 15.329 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_1207 9fd3308c2b63052659b30732fccb8448 308 PANTHER PTHR30622 2 152 1.1E-61 T 19-04-2016 AMED_1207 9fd3308c2b63052659b30732fccb8448 308 PANTHER PTHR30622 178 308 1.1E-61 T 19-04-2016 AMED_1207 9fd3308c2b63052659b30732fccb8448 308 PANTHER PTHR30622:SF4 2 152 1.1E-61 T 19-04-2016 AMED_1207 9fd3308c2b63052659b30732fccb8448 308 PANTHER PTHR30622:SF4 178 308 1.1E-61 T 19-04-2016 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PANTHER PTHR11452 3 390 1.4E-181 T 19-04-2016 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SMART SM00458 397 526 1.3E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Pfam PF00652 Ricin-type beta-trefoil lectin domain 400 523 2.5E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SUPERFAMILY SSF51011 297 390 6.68E-25 T 19-04-2016 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SUPERFAMILY SSF50370 397 523 1.57E-41 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 SUPERFAMILY SSF51445 31 302 1.86E-94 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Gene3D G3DSA:3.20.20.70 31 295 1.9E-119 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Gene3D G3DSA:2.80.10.50 396 524 3.3E-41 T 19-04-2016 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 34 53 8.6E-50 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 145 162 8.6E-50 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 258 279 8.6E-50 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 173 191 8.6E-50 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 70 85 8.6E-50 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 PRINTS PR00740 Glycosyl hydrolase family 27 signature 111 132 8.6E-50 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 ProSitePatterns PS00512 Alpha-galactosidase signature. 75 91 - T 19-04-2016 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Gene3D G3DSA:2.60.40.1180 296 391 1.7E-31 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_7823 1fd4c214c8be37fb08ebcfef4b3ef6a5 526 Pfam PF16499 Alpha galactosidase A 39 367 1.2E-91 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_2181 7cfb0670778e30446fca7c9c72e98a08 225 PANTHER PTHR32125:SF4 7 225 3.1E-43 T 19-04-2016 AMED_2181 7cfb0670778e30446fca7c9c72e98a08 225 PANTHER PTHR32125 7 225 3.1E-43 T 19-04-2016 AMED_2181 7cfb0670778e30446fca7c9c72e98a08 225 Gene3D G3DSA:3.90.550.10 5 224 7.1E-53 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2181 7cfb0670778e30446fca7c9c72e98a08 225 SUPERFAMILY SSF53448 6 223 1.24E-42 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2181 7cfb0670778e30446fca7c9c72e98a08 225 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 224 1.1E-46 T 19-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Pfam PF02913 FAD linked oxidases, C-terminal domain 284 534 1.1E-44 T 19-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 SUPERFAMILY SSF55103 285 545 5.23E-51 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 PANTHER PTHR11748 236 585 7.3E-127 T 19-04-2016 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Gene3D G3DSA:3.30.465.10 111 281 3.5E-30 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 PANTHER PTHR11748:SF35 236 585 7.3E-127 T 19-04-2016 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 SUPERFAMILY SSF46548 568 660 3.4E-9 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 PANTHER PTHR11748:SF35 17 198 7.3E-127 T 19-04-2016 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Pfam PF13183 4Fe-4S dicluster domain 573 656 4.1E-10 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Gene3D G3DSA:1.10.1060.10 514 668 3.7E-13 T 19-04-2016 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 SUPERFAMILY SSF56176 22 280 7.36E-48 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Gene3D G3DSA:3.30.43.10 22 107 1.0E-15 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 PANTHER PTHR11748 17 198 7.3E-127 T 19-04-2016 AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Pfam PF02754 Cysteine-rich domain 762 836 0.14 T 19-04-2016 IPR004017 Cysteine-rich domain AMED_6570 b687b9286d2c46fc369752940fb622a3 989 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 642 653 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_6570 b687b9286d2c46fc369752940fb622a3 989 Pfam PF01565 FAD binding domain 57 195 2.8E-37 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 SUPERFAMILY SSF53187 188 499 1.54E-105 T 19-04-2016 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PANTHER PTHR11963 115 498 3.4E-137 T 19-04-2016 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 352 359 - T 19-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PRINTS PR00481 Cytosol aminopeptidase signature 326 347 2.7E-47 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PRINTS PR00481 Cytosol aminopeptidase signature 267 284 2.7E-47 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PRINTS PR00481 Cytosol aminopeptidase signature 377 392 2.7E-47 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PRINTS PR00481 Cytosol aminopeptidase signature 348 368 2.7E-47 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PRINTS PR00481 Cytosol aminopeptidase signature 289 310 2.7E-47 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 Gene3D G3DSA:3.40.630.10 187 501 1.6E-119 T 19-04-2016 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 PANTHER PTHR11963:SF13 115 498 3.4E-137 T 19-04-2016 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 193 496 4.7E-111 T 19-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMED_1062 62f197a6e26f4c3c4d552c31d9a6406b 503 Gene3D G3DSA:3.40.220.10 47 186 1.4E-5 T 19-04-2016 AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 Gene3D G3DSA:3.40.1280.10 161 313 8.7E-50 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 SUPERFAMILY SSF55315 65 145 1.12E-14 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 Gene3D G3DSA:3.30.1330.30 63 144 3.3E-20 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 72 147 6.8E-16 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 Pfam PF00588 SpoU rRNA Methylase family 165 305 1.9E-34 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 PANTHER PTHR12029 58 313 3.0E-68 T 19-04-2016 AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 SMART SM00967 72 148 5.8E-18 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 SUPERFAMILY SSF75217 137 316 2.16E-43 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 PANTHER PTHR12029:SF58 58 313 3.0E-68 T 19-04-2016 AMED_8685 1db07c95d294364b58ff116cc57ee91d 318 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 71 312 6.7E-58 T 19-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF56801 1009 1535 1.09E-147 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1546 1561 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF52777 750 996 2.56E-63 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:3.40.50.980 4 152 1.3E-42 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:3.40.50.980 1021 1186 1.0E-47 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00550 Phosphopantetheine attachment site 498 560 1.9E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00550 Phosphopantetheine attachment site 1524 1584 2.0E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00550 Phosphopantetheine attachment site 2478 2539 7.1E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:3.40.50.980 153 295 5.6E-27 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1878 2027 2.9E-33 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 PANTHER PTHR24095 1 1497 0.0 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF13193 AMP-binding enzyme C-terminal domain 1424 1497 2.0E-12 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF13193 AMP-binding enzyme C-terminal domain 401 471 9.4E-12 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00668 Condensation domain 577 861 4.4E-67 T 19-04-2016 IPR001242 Condensation domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00668 Condensation domain 1601 1870 7.9E-40 T 19-04-2016 IPR001242 Condensation domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00668 Condensation domain 2035 2319 5.0E-55 T 19-04-2016 IPR001242 Condensation domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:1.10.1200.10 500 564 6.1E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:1.10.1200.10 1526 1585 6.5E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:1.10.1200.10 2468 2542 5.5E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF47336 489 560 2.62E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SMART SM00823 Phosphopantetheine attachment site 495 564 1.2E-10 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SMART SM00823 Phosphopantetheine attachment site 1522 1590 4.0E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SMART SM00823 Phosphopantetheine attachment site 2476 2545 6.8E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1162 1173 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00501 AMP-binding enzyme 1026 1416 1.6E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF00501 AMP-binding enzyme 9 391 5.6E-76 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF52777 1600 1776 1.67E-33 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Pfam PF13745 HxxPF-repeated domain 885 974 2.4E-28 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF52777 2033 2218 3.11E-40 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:2.30.38.10 305 380 1.0E-19 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:2.30.38.10 1327 1399 4.4E-26 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 ProSitePatterns PS00012 Phosphopantetheine attachment site. 519 534 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 29 415 2.9E-99 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1047 1440 4.7E-128 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF47336 1516 1584 6.41E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 PANTHER PTHR24095:SF137 1 1497 0.0 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SMART SM01294 496 560 2.4E-4 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:3.30.300.30 387 499 5.1E-33 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:3.30.300.30 1411 1525 1.3E-38 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 Gene3D G3DSA:3.40.50.980 1190 1326 5.6E-32 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF56801 3 508 1.44E-128 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF47336 2468 2541 6.02E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2500 2515 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF52777 580 744 5.78E-48 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF52777 2204 2445 2.28E-51 T 19-04-2016 AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 144 155 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4065 c53362c3f887bb9d751c7643d10e9dd4 2565 SUPERFAMILY SSF52777 1765 2003 1.48E-38 T 19-04-2016 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 Gene3D G3DSA:3.40.190.10 80 204 1.7E-15 T 19-04-2016 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 SUPERFAMILY SSF53850 85 287 1.36E-19 T 19-04-2016 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 SUPERFAMILY SSF46785 2 86 3.41E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.9E-21 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 Gene3D G3DSA:3.40.190.10 205 266 2.1E-8 T 19-04-2016 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 PANTHER PTHR30346 2 288 5.7E-43 T 19-04-2016 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 Gene3D G3DSA:1.10.10.10 2 79 1.3E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4568 625b91e36ae31c00842c3e094b25b2ef 289 Pfam PF03466 LysR substrate binding domain 86 288 5.0E-19 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 PIRSF PIRSF036625 3 247 6.4E-50 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 Gene3D G3DSA:3.30.450.40 14 176 1.5E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 Pfam PF03861 ANTAR domain 183 233 6.2E-16 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 SUPERFAMILY SSF55781 32 181 3.19E-19 T 19-04-2016 IPR029016 GAF domain-like AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 SMART SM01012 180 235 1.0E-16 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 SMART SM00065 35 178 8.9E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 Pfam PF13185 GAF domain 34 160 7.4E-11 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_7480 7d3d214c9e24418db2380b7c1d3428df 248 Gene3D G3DSA:1.10.10.10 183 237 1.1E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4097 7d7db6d407a7308b5538d118a2738478 465 Gene3D G3DSA:3.20.20.80 159 460 1.2E-93 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 PANTHER PTHR19328 138 298 2.1E-42 T 19-04-2016 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 SUPERFAMILY SSF49384 31 135 3.28E-29 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 Gene3D G3DSA:2.60.40.290 33 136 3.6E-36 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 288 297 - T 19-04-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 SMART SM00637 34 134 5.1E-43 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 99 112 - T 19-04-2016 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 Pfam PF00553 Cellulose binding domain 34 134 1.1E-30 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 PANTHER PTHR19328:SF13 138 298 2.1E-42 T 19-04-2016 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 176 425 1.2E-46 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_4097 7d7db6d407a7308b5538d118a2738478 465 SUPERFAMILY SSF51445 159 463 5.1E-76 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 PANTHER PTHR33570 151 271 2.4E-32 T 19-04-2016 AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 SUPERFAMILY SSF69118 16 271 5.6E-57 T 19-04-2016 IPR029032 AhpD-like AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 126 4.9E-15 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 Pfam PF02627 Carboxymuconolactone decarboxylase family 181 266 2.4E-17 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 Gene3D G3DSA:1.20.1290.10 151 271 6.2E-36 T 19-04-2016 IPR029032 AhpD-like AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 Gene3D G3DSA:1.20.1290.10 42 132 2.8E-24 T 19-04-2016 IPR029032 AhpD-like AMED_5182 ce370919ee45af4c89ae425ba6dae2b6 271 PANTHER PTHR33570:SF4 151 271 2.4E-32 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13424 Tetratricopeptide repeat 820 892 6.3E-11 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF48452 915 1011 4.07E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PANTHER PTHR22845:SF4 225 679 6.4E-89 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF48452 177 339 3.21E-29 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13560 Helix-turn-helix domain 21 74 2.0E-9 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF48452 774 898 1.9E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF00931 NB-ARC domain 365 601 1.4E-9 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF47413 21 76 5.63E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PRINTS PR00364 Disease resistance protein signature 367 382 5.1E-9 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PRINTS PR00364 Disease resistance protein signature 529 543 5.1E-9 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PRINTS PR00364 Disease resistance protein signature 445 459 5.1E-9 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.25.40.10 700 899 6.6E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.25.40.10 186 300 6.6E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00530 24 80 1.1E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 976 1009 7.9 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 860 893 17.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 936 969 1.1 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 820 853 2.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00028 780 813 0.011 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.25.40.10 913 1024 9.5E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:3.40.50.300 364 461 5.7E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM01043 180 324 9.1E-36 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF52540 340 597 8.9E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.10.10.10 95 174 2.2E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF03704 Bacterial transcriptional activator domain 180 323 1.2E-31 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SUPERFAMILY SSF46894 86 173 1.02E-8 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 SMART SM00862 99 173 1.2E-4 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF12862 Anaphase-promoting complex subunit 5 937 971 2.4 T 19-04-2016 IPR026000 Anaphase-promoting complex subunit 5 UniPathway: UPA00143 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Gene3D G3DSA:1.10.260.40 14 74 1.6E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 PANTHER PTHR22845 225 679 6.4E-89 T 19-04-2016 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13374 Tetratricopeptide repeat 980 1008 0.0062 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4021 2b6784a9e9cab3b8cd99c1951b3792e6 1034 Pfam PF13176 Tetratricopeptide repeat 785 813 0.034 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1158 6a35aa56938dae931992e6ba90752255 322 PANTHER PTHR12862 6 306 2.9E-66 T 19-04-2016 AMED_1158 6a35aa56938dae931992e6ba90752255 322 PANTHER PTHR12862:SF4 6 306 2.9E-66 T 19-04-2016 AMED_1158 6a35aa56938dae931992e6ba90752255 322 Gene3D G3DSA:3.30.420.40 212 285 8.4E-5 T 19-04-2016 AMED_1158 6a35aa56938dae931992e6ba90752255 322 SUPERFAMILY SSF53067 2 111 8.03E-12 T 19-04-2016 AMED_1158 6a35aa56938dae931992e6ba90752255 322 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 299 2.3E-22 T 19-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type AMED_1158 6a35aa56938dae931992e6ba90752255 322 SUPERFAMILY SSF53067 116 306 4.34E-33 T 19-04-2016 AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 SUPERFAMILY SSF46785 7 137 3.14E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 Pfam PF12802 MarR family 29 86 1.8E-8 T 19-04-2016 AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 Gene3D G3DSA:1.10.287.100 94 138 1.3E-14 T 19-04-2016 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 PANTHER PTHR39515:SF2 2 139 2.7E-24 T 19-04-2016 AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 PANTHER PTHR39515 2 139 2.7E-24 T 19-04-2016 AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 Gene3D G3DSA:1.10.10.10 29 92 1.7E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 61 95 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_3578 a7b16bdbcac9b1c61b4d6ea1b16c5680 146 SMART SM00347 22 122 7.5E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 Gene3D G3DSA:3.10.150.10 237 350 2.1E-21 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 SUPERFAMILY SSF55979 119 194 3.98E-11 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 21 104 1.5E-8 T 19-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 Gene3D G3DSA:3.10.150.10 118 226 2.6E-17 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 238 350 1.6E-18 T 19-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 PANTHER PTHR30478 2 353 5.2E-47 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 SUPERFAMILY SSF55979 1 104 6.8E-10 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 SUPERFAMILY SSF55979 237 350 6.28E-17 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 Pfam PF02767 DNA polymerase III beta subunit, central domain 119 226 2.1E-12 T 19-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 Gene3D G3DSA:3.10.150.10 1 105 6.0E-11 T 19-04-2016 AMED_8835 f0d31d387ae5a32ac79b7f92556dd67e 353 SMART SM00480 10 348 1.3E-15 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 SUPERFAMILY SSF50331 231 349 4.89E-14 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 SUPERFAMILY SSF52540 7 230 2.55E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 SMART SM00382 24 206 2.4E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 Pfam PF00005 ABC transporter 17 158 8.4E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 Gene3D G3DSA:2.40.50.100 284 350 3.9E-12 T 19-04-2016 AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 PANTHER PTHR24220:SF439 1 308 1.6E-92 T 19-04-2016 AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 PANTHER PTHR24220 1 308 1.6E-92 T 19-04-2016 AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 Gene3D G3DSA:3.40.50.300 17 227 4.7E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8511 49c8da8778d2995f7882d54c4d31f7f5 355 Pfam PF03459 TOBE domain 286 348 1.3E-8 T 19-04-2016 IPR005116 Transport-associated OB, type 1 AMED_7332 3d31001470cbdeab4f0bbe227973b4dc 145 Gene3D G3DSA:3.10.450.50 2 139 3.7E-38 T 19-04-2016 IPR032710 NTF2-like domain AMED_7332 3d31001470cbdeab4f0bbe227973b4dc 145 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 13 134 1.8E-29 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_7332 3d31001470cbdeab4f0bbe227973b4dc 145 Pfam PF14534 Domain of unknown function (DUF4440) 17 129 8.3E-11 T 19-04-2016 IPR027843 Domain of unknown function DUF4440 AMED_7332 3d31001470cbdeab4f0bbe227973b4dc 145 SUPERFAMILY SSF54427 12 137 1.01E-29 T 19-04-2016 IPR032710 NTF2-like domain AMED_6826 26427909e9ddc41e9b3f261f54beabd1 139 SUPERFAMILY SSF54637 3 134 2.27E-23 T 19-04-2016 IPR029069 HotDog domain AMED_6826 26427909e9ddc41e9b3f261f54beabd1 139 Gene3D G3DSA:3.10.129.10 3 134 1.1E-32 T 19-04-2016 IPR029069 HotDog domain AMED_6826 26427909e9ddc41e9b3f261f54beabd1 139 Pfam PF13279 Thioesterase-like superfamily 10 118 7.5E-9 T 19-04-2016 AMED_6826 26427909e9ddc41e9b3f261f54beabd1 139 PANTHER PTHR31793 3 137 9.4E-20 T 19-04-2016 AMED_5616 099104708603902c41dc1ecbc95bda12 895 Pfam PF00703 Glycosyl hydrolases family 2 208 327 6.1E-8 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5616 099104708603902c41dc1ecbc95bda12 895 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 391 498 2.6E-14 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5616 099104708603902c41dc1ecbc95bda12 895 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 98 206 1.8E-10 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5616 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:3.20.20.80 326 556 6.0E-39 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5616 099104708603902c41dc1ecbc95bda12 895 PANTHER PTHR10066 14 530 1.0E-40 T 19-04-2016 AMED_5616 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.60.120.260 61 199 2.0E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5616 099104708603902c41dc1ecbc95bda12 895 SUPERFAMILY SSF49785 63 206 9.5E-19 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5616 099104708603902c41dc1ecbc95bda12 895 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 795 880 3.0E-22 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5616 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.60.40.320 200 325 1.1E-6 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_5616 099104708603902c41dc1ecbc95bda12 895 SUPERFAMILY SSF51445 332 597 6.33E-29 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5616 099104708603902c41dc1ecbc95bda12 895 Gene3D G3DSA:2.80.10.50 761 893 3.2E-31 T 19-04-2016 AMED_5616 099104708603902c41dc1ecbc95bda12 895 SUPERFAMILY SSF50370 759 892 1.15E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5616 099104708603902c41dc1ecbc95bda12 895 SMART SM00458 760 893 3.8E-8 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 TIGRFAM TIGR01312 XylB: xylulokinase 8 441 8.7E-131 T 19-04-2016 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 230 8.8E-47 T 19-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 PANTHER PTHR10196:SF67 1 478 2.2E-123 T 19-04-2016 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 123 135 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 333 354 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 PANTHER PTHR10196 1 478 2.2E-123 T 19-04-2016 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 PIRSF PIRSF000538 3 472 1.8E-81 T 19-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 Gene3D G3DSA:3.30.420.40 2 230 3.7E-47 T 19-04-2016 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 238 421 2.6E-22 T 19-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 Gene3D G3DSA:3.30.420.40 233 450 6.3E-29 T 19-04-2016 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 SUPERFAMILY SSF53067 5 231 6.87E-50 T 19-04-2016 AMED_0739 7512557bf9c0d77a292309a1c9f01901 481 SUPERFAMILY SSF53067 233 425 9.91E-40 T 19-04-2016 AMED_7331 73d18a4ad4d799441af4cec6d51704a2 290 PANTHER PTHR14194 1 290 2.8E-70 T 19-04-2016 AMED_7331 73d18a4ad4d799441af4cec6d51704a2 290 PANTHER PTHR14194:SF21 1 290 2.8E-70 T 19-04-2016 AMED_7331 73d18a4ad4d799441af4cec6d51704a2 290 Gene3D G3DSA:3.40.50.720 2 219 4.9E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7331 73d18a4ad4d799441af4cec6d51704a2 290 SUPERFAMILY SSF51735 2 234 1.01E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7331 73d18a4ad4d799441af4cec6d51704a2 290 Pfam PF13460 NAD(P)H-binding 6 188 3.0E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 PANTHER PTHR10909 29 461 2.2E-198 T 19-04-2016 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 SUPERFAMILY SSF47203 292 445 2.09E-37 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 SUPERFAMILY SSF56645 54 296 5.92E-38 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 PANTHER PTHR10909:SF289 29 461 2.2E-198 T 19-04-2016 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 Gene3D G3DSA:1.20.140.10 279 446 7.4E-36 T 19-04-2016 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 287 441 1.6E-25 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 Gene3D G3DSA:2.40.110.10 177 278 1.4E-19 T 19-04-2016 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 177 277 1.4E-14 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_4713 c102be020975c87fd6ca63d3f5419fc0 546 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 400 419 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 SMART SM00560 1024 1160 2.0E-8 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 SMART SM00560 790 928 2.7E-15 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 SUPERFAMILY SSF49899 1179 1387 4.01E-16 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 Gene3D G3DSA:2.60.120.200 767 933 1.3E-32 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 SUPERFAMILY SSF49899 699 934 2.47E-30 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 Gene3D G3DSA:2.60.120.200 962 1165 2.6E-35 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 Gene3D G3DSA:2.60.120.200 1176 1380 8.1E-15 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 SUPERFAMILY SSF49899 952 1165 1.27E-34 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1007 1163 1.2E-27 T 19-04-2016 AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 773 930 2.1E-29 T 19-04-2016 AMED_5523 a0511f795daaeaeea84a7638e45924de 1404 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1213 1380 2.4E-14 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:2.40.30.10 280 374 4.6E-26 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF54980 378 453 1.91E-20 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.40.50.300 6 271 3.0E-87 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF03144 Elongation factor Tu domain 2 298 362 1.9E-11 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.30.70.240 569 651 8.6E-21 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PANTHER PTHR23115 2 176 2.2E-250 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF52540 7 266 4.06E-85 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF14492 Elongation Factor G, domain II 378 449 3.8E-26 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF00679 Elongation factor G C-terminus 571 651 5.0E-20 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.30.230.10 456 568 6.3E-37 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PANTHER PTHR23115:SF66 2 176 2.2E-250 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PANTHER PTHR23115:SF66 239 651 2.2E-250 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SMART SM00838 571 651 3.1E-25 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF50447 250 373 1.08E-26 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.3E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 57 65 1.3E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.3E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.3E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.3E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF54211 454 566 3.29E-32 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 651 3.0E-211 T 19-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Gene3D G3DSA:3.30.70.870 378 451 9.1E-28 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SMART SM00889 452 569 4.6E-52 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 PANTHER PTHR23115 239 651 2.2E-250 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 50 65 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF00009 Elongation factor Tu GTP binding domain 8 266 4.9E-61 T 19-04-2016 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 Pfam PF03764 Elongation factor G, domain IV 451 568 8.6E-41 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 SUPERFAMILY SSF54980 571 651 3.96E-20 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_4472 a247fa9ce803aeb7d24846df0b27240a 651 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 179 7.7E-33 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 PANTHER PTHR30244 277 435 3.6E-123 T 19-04-2016 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 PANTHER PTHR30244 26 249 3.6E-123 T 19-04-2016 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 PANTHER PTHR30244:SF11 277 435 3.6E-123 T 19-04-2016 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 PANTHER PTHR30244:SF11 26 249 3.6E-123 T 19-04-2016 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 46 428 8.3E-88 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_5420 93765d50c2cda95c2220a99c991d4537 435 Gene3D G3DSA:3.90.1150.10 305 429 7.9E-45 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 SUPERFAMILY SSF53383 47 432 5.41E-93 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_5420 93765d50c2cda95c2220a99c991d4537 435 Gene3D G3DSA:3.40.640.10 47 303 1.3E-65 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_5420 93765d50c2cda95c2220a99c991d4537 435 PIRSF PIRSF000390 31 435 8.8E-95 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 Gene3D G3DSA:2.60.120.280 24 154 2.1E-11 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 SUPERFAMILY SSF46689 221 269 2.11E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 Gene3D G3DSA:1.10.10.60 222 270 6.7E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 Gene3D G3DSA:1.10.10.60 183 221 4.1E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 3.3E-6 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 3.3E-6 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 SMART SM00342 184 267 6.8E-26 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 PANTHER PTHR11019:SF45 32 275 2.8E-36 T 19-04-2016 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 Pfam PF02311 AraC-like ligand binding domain 31 135 6.4E-6 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 PANTHER PTHR11019 32 275 2.8E-36 T 19-04-2016 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 Pfam PF12833 Helix-turn-helix domain 191 268 8.9E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8136 8ebc44c75285cfb821461c92c741ece4 275 SUPERFAMILY SSF51215 29 154 8.11E-14 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 PANTHER PTHR11530 1 291 3.9E-83 T 19-04-2016 IPR023209 D-amino-acid oxidase GO:0003884|GO:0046416|GO:0071949 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.30.9.10 148 253 2.1E-34 T 19-04-2016 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 PIRSF PIRSF000189 1 294 7.1E-70 T 19-04-2016 IPR023209 D-amino-acid oxidase GO:0003884|GO:0046416|GO:0071949 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 Pfam PF01266 FAD dependent oxidoreductase 3 290 9.4E-38 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.50.50.60 18 51 1.4E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.50.50.60 116 147 1.4E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 SUPERFAMILY SSF54373 168 255 3.79E-18 T 19-04-2016 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.50.50.60 2 17 2.0E-7 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 Gene3D G3DSA:3.50.50.60 72 108 2.0E-7 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 SUPERFAMILY SSF51971 1 181 3.3E-30 T 19-04-2016 AMED_2680 8910c37be92615a5c9bbbc1c2aa719f3 294 SUPERFAMILY SSF51971 241 292 3.3E-30 T 19-04-2016 AMED_7049 fd34d6a64156eb6ae249f50d7f4d7d2e 231 Pfam PF13280 WYL domain 146 206 2.8E-13 T 19-04-2016 IPR026881 WYL domain AMED_7049 fd34d6a64156eb6ae249f50d7f4d7d2e 231 PANTHER PTHR34580 1 205 4.2E-30 T 19-04-2016 AMED_7049 fd34d6a64156eb6ae249f50d7f4d7d2e 231 PANTHER PTHR34580:SF3 1 205 4.2E-30 T 19-04-2016 AMED_7049 fd34d6a64156eb6ae249f50d7f4d7d2e 231 Gene3D G3DSA:1.10.10.10 3 69 2.8E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7049 fd34d6a64156eb6ae249f50d7f4d7d2e 231 SUPERFAMILY SSF46785 6 66 5.03E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7049 fd34d6a64156eb6ae249f50d7f4d7d2e 231 Pfam PF08279 HTH domain 9 65 1.5E-11 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 PANTHER PTHR11731:SF151 48 202 9.9E-17 T 19-04-2016 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 PANTHER PTHR11731:SF151 233 347 9.9E-17 T 19-04-2016 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 SUPERFAMILY SSF53474 44 365 1.69E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 PANTHER PTHR11731 48 202 9.9E-17 T 19-04-2016 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 PANTHER PTHR11731 233 347 9.9E-17 T 19-04-2016 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 345 525 1.7E-21 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 SMART SM00939 328 546 3.1E-24 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:2.60.120.260 363 559 4.3E-26 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 52 315 1.2E-31 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:3.40.50.1820 13 192 9.1E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 Gene3D G3DSA:3.40.50.1820 238 361 9.1E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 SUPERFAMILY SSF49785 357 538 5.53E-25 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6480 b0c6664c407a318ff903d354fb59f7c0 573 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 48 196 5.2E-29 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 Gene3D G3DSA:1.10.1740.10 7 75 1.1E-14 T 19-04-2016 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 SUPERFAMILY SSF88659 106 164 1.85E-7 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 PANTHER PTHR30173 1 377 3.8E-145 T 19-04-2016 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 PANTHER PTHR30173:SF7 1 377 3.8E-145 T 19-04-2016 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 SUPERFAMILY SSF88946 7 78 1.14E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 Pfam PF04542 Sigma-70 region 2 11 75 2.1E-12 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5688 0eaf54a9b34ec5ee4d150b75484f7640 410 Gene3D G3DSA:1.10.10.10 105 164 4.6E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 SUPERFAMILY SSF46689 203 254 4.28E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 Gene3D G3DSA:1.10.10.60 208 257 3.4E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 PANTHER PTHR11019:SF68 1 311 3.7E-83 T 19-04-2016 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 Pfam PF12833 Helix-turn-helix domain 227 304 3.0E-20 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 Pfam PF01965 DJ-1/PfpI family 3 165 2.9E-16 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 Gene3D G3DSA:3.40.50.880 2 207 6.5E-46 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 257 299 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 SUPERFAMILY SSF46689 257 306 1.79E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 SUPERFAMILY SSF52317 2 185 5.63E-40 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 PANTHER PTHR11019 1 311 3.7E-83 T 19-04-2016 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 Gene3D G3DSA:1.10.10.60 258 306 1.8E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6216 d56f66e8c37383e670e1b57d4e50d5e9 311 SMART SM00342 220 303 1.3E-25 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 PANTHER PTHR16305:SF28 3 844 7.0E-77 T 19-04-2016 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 SUPERFAMILY SSF46894 837 899 7.82E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 Pfam PF00196 Bacterial regulatory proteins, luxR family 848 896 1.8E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 Gene3D G3DSA:3.40.50.300 3 61 1.5E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 879 891 6.2E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 863 879 6.2E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 849 863 6.2E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 SMART SM00421 846 903 6.1E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 ProSitePatterns PS00622 LuxR-type HTH domain signature. 863 890 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 Gene3D G3DSA:1.10.10.10 842 899 3.8E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 SUPERFAMILY SSF52540 121 222 6.97E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 SUPERFAMILY SSF52540 3 83 6.97E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 Pfam PF13191 AAA ATPase domain 3 153 2.1E-15 T 19-04-2016 AMED_5641 79ac8a8fe94c738211d4ee6d8a060da8 925 PANTHER PTHR16305 3 844 7.0E-77 T 19-04-2016 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 103 122 1.0E-51 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 82 102 1.0E-51 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 161 182 1.0E-51 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 137 149 1.0E-51 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 274 283 1.0E-51 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 6 19 1.0E-51 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 5 323 1.8E-125 T 19-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 Gene3D G3DSA:3.30.420.40 4 165 7.1E-44 T 19-04-2016 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 3 343 60.869 T 19-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PANTHER PTHR11735 3 344 1.5E-130 T 19-04-2016 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 Pfam PF00814 Glycoprotease family 29 317 2.5E-96 T 19-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 PANTHER PTHR11735:SF6 3 344 1.5E-130 T 19-04-2016 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 SUPERFAMILY SSF53067 4 319 3.33E-37 T 19-04-2016 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 ProSitePatterns PS01016 Glycoprotease family signature. 102 122 - T 19-04-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0749 2262af2cc20637c9d0216ef3b5d6d547 348 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 6 317 6.7E-96 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.10.10.10 10 96 3.7E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7818 6115fdaf81247becd37613b31781c821 1019 Pfam PF13424 Tetratricopeptide repeat 883 954 3.3E-10 T 19-04-2016 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF46894 2 94 2.32E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_7818 6115fdaf81247becd37613b31781c821 1019 PRINTS PR00364 Disease resistance protein signature 381 396 4.5E-9 T 19-04-2016 AMED_7818 6115fdaf81247becd37613b31781c821 1019 PRINTS PR00364 Disease resistance protein signature 548 562 4.5E-9 T 19-04-2016 AMED_7818 6115fdaf81247becd37613b31781c821 1019 PRINTS PR00364 Disease resistance protein signature 460 474 4.5E-9 T 19-04-2016 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 818 947 9.9E-25 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 948 1008 7.7E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SMART SM00862 15 95 2.8E-11 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Pfam PF03704 Bacterial transcriptional activator domain 278 327 1.9E-5 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_7818 6115fdaf81247becd37613b31781c821 1019 Pfam PF03704 Bacterial transcriptional activator domain 103 243 3.9E-25 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_7818 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF48452 820 998 2.56E-27 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Pfam PF00931 NB-ARC domain 380 560 7.5E-10 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_7818 6115fdaf81247becd37613b31781c821 1019 PANTHER PTHR22845 281 701 1.3E-70 T 19-04-2016 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 798 817 4.7E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Gene3D G3DSA:1.25.40.10 166 225 4.7E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 PANTHER PTHR22845:SF4 281 701 1.3E-70 T 19-04-2016 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF48452 279 351 4.93E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF48452 97 256 1.42E-22 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 93 9.5E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SUPERFAMILY SSF52540 344 610 1.39E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7818 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 923 956 49.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 843 876 14.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 803 836 3.7 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SMART SM00028 883 916 0.014 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_7818 6115fdaf81247becd37613b31781c821 1019 SMART SM01043 102 246 2.4E-25 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:1.10.486.10 477 634 4.4E-19 T 19-04-2016 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 242 346 6.5E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 121 183 6.5E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 23 88 6.5E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 PANTHER PTHR11070 633 696 2.9E-254 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 PANTHER PTHR11070 24 591 2.9E-254 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 PANTHER PTHR11070 740 1077 2.9E-254 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF13361 UvrD-like helicase C-terminal domain 608 763 1.9E-15 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF13361 UvrD-like helicase C-terminal domain 362 514 3.8E-9 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52980 886 1051 1.34E-5 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52540 543 693 1.35E-106 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52540 22 200 1.35E-106 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52540 741 788 1.35E-106 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 SUPERFAMILY SSF52540 232 513 1.35E-106 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 PANTHER PTHR11070:SF5 633 696 2.9E-254 T 19-04-2016 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 PANTHER PTHR11070:SF5 24 591 2.9E-254 T 19-04-2016 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 PANTHER PTHR11070:SF5 740 1077 2.9E-254 T 19-04-2016 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF12705 PD-(D/E)XK nuclease superfamily 919 1067 4.3E-11 T 19-04-2016 AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 362 476 1.9E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 737 785 1.9E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Gene3D G3DSA:3.40.50.300 656 691 1.9E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1134 debb63e5b46ec2e207758404dfabb416 1080 Pfam PF00580 UvrD/REP helicase N-terminal domain 25 344 4.3E-46 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 PANTHER PTHR30154 1 156 1.0E-45 T 19-04-2016 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 Gene3D G3DSA:3.30.70.920 59 143 4.7E-22 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 2.7E-12 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 2.7E-12 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 2.7E-12 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 SUPERFAMILY SSF54909 66 155 6.7E-17 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 SMART SM00344 6 115 1.7E-33 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 Pfam PF13404 AsnC-type helix-turn-helix domain 6 47 1.9E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 9.8E-18 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 Gene3D G3DSA:1.10.10.10 5 56 2.5E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 SUPERFAMILY SSF46785 6 65 2.32E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0265 8044a8e50069ec246c4340a5ee14f205 157 PANTHER PTHR30154:SF28 1 156 1.0E-45 T 19-04-2016 AMED_7088 4168fd957bb0b8580051d9db208b1208 126 Gene3D G3DSA:3.40.50.150 2 117 5.5E-12 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7088 4168fd957bb0b8580051d9db208b1208 126 SUPERFAMILY SSF53335 2 117 3.88E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6751 d24f387e16b9073cbf0e3fdd7d74fc38 200 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 14 192 9.0E-31 T 19-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 AMED_6751 d24f387e16b9073cbf0e3fdd7d74fc38 200 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 12 165 2.2E-8 T 19-04-2016 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 AMED_6751 d24f387e16b9073cbf0e3fdd7d74fc38 200 SUPERFAMILY SSF51283 13 192 1.44E-27 T 19-04-2016 IPR029054 dUTPase-like AMED_6751 d24f387e16b9073cbf0e3fdd7d74fc38 200 PANTHER PTHR11241:SF1 4 195 4.6E-27 T 19-04-2016 AMED_6751 d24f387e16b9073cbf0e3fdd7d74fc38 200 PANTHER PTHR11241 4 195 4.6E-27 T 19-04-2016 AMED_6751 d24f387e16b9073cbf0e3fdd7d74fc38 200 Gene3D G3DSA:2.70.40.10 13 193 4.8E-33 T 19-04-2016 IPR029054 dUTPase-like AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 Pfam PF00069 Protein kinase domain 10 210 6.5E-37 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 PANTHER PTHR24362 6 319 9.2E-68 T 19-04-2016 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 PANTHER PTHR24362:SF160 6 319 9.2E-68 T 19-04-2016 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 Gene3D G3DSA:1.10.510.10 75 249 6.6E-36 T 19-04-2016 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 SMART SM00220 10 255 1.2E-43 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 Gene3D G3DSA:3.30.200.20 7 74 4.9E-19 T 19-04-2016 AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 SUPERFAMILY SSF56112 7 254 3.06E-62 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8166 d049c6e9e006da3bb2b30d780f470d7f 453 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 PANTHER PTHR30295 1 156 5.7E-47 T 19-04-2016 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 PIRSF PIRSF005900 2 158 1.3E-43 T 19-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 Pfam PF00210 Ferritin-like domain 20 156 5.3E-23 T 19-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 PANTHER PTHR30295:SF10 1 156 5.7E-47 T 19-04-2016 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 ProSitePatterns PS00819 Dps protein family signature 2. 66 80 - T 19-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 135 153 2.9E-11 T 19-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 64 80 2.9E-11 T 19-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 40 56 2.9E-11 T 19-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 SUPERFAMILY SSF47240 7 155 4.01E-44 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_8870 eb6c4a531d561bafa5fd09be52f785cd 158 Gene3D G3DSA:1.20.1260.10 6 155 1.7E-45 T 19-04-2016 IPR012347 Ferritin-related AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 PANTHER PTHR30204:SF27 1 243 4.7E-37 T 19-04-2016 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 Gene3D G3DSA:1.10.490.50 158 242 2.3E-19 T 19-04-2016 IPR012925 TipAS antibiotic-recognition domain AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 SMART SM00422 3 72 7.2E-15 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 Gene3D G3DSA:1.10.1660.10 4 113 6.8E-26 T 19-04-2016 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 SUPERFAMILY SSF89082 159 241 3.27E-15 T 19-04-2016 IPR012925 TipAS antibiotic-recognition domain AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 SUPERFAMILY SSF46955 3 109 4.76E-24 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 1.4E-5 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 1.4E-5 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 1.4E-5 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 PANTHER PTHR30204 1 243 4.7E-37 T 19-04-2016 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 Pfam PF13411 MerR HTH family regulatory protein 4 71 1.3E-15 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_9236 a3f057d61c248e42e6c525a2b9f73d3e 244 Pfam PF07739 TipAS antibiotic-recognition domain 127 237 1.3E-26 T 19-04-2016 IPR012925 TipAS antibiotic-recognition domain AMED_1508 83a9b8d37374a968e0075c206d09725d 243 PANTHER PTHR30294 8 243 9.5E-43 T 19-04-2016 AMED_1508 83a9b8d37374a968e0075c206d09725d 243 Pfam PF01061 ABC-2 type transporter 8 200 5.3E-15 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_1508 83a9b8d37374a968e0075c206d09725d 243 PANTHER PTHR30294:SF6 8 243 9.5E-43 T 19-04-2016 AMED_1508 83a9b8d37374a968e0075c206d09725d 243 PIRSF PIRSF006648 3 241 1.2E-18 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_5284 1cd8708e08bfd01ad14414de950ab00e 291 PANTHER PTHR11071 133 267 5.7E-39 T 19-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 AMED_5284 1cd8708e08bfd01ad14414de950ab00e 291 SUPERFAMILY SSF50891 124 289 1.05E-33 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_5284 1cd8708e08bfd01ad14414de950ab00e 291 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 129 287 1.4E-27 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_5284 1cd8708e08bfd01ad14414de950ab00e 291 Gene3D G3DSA:2.40.100.10 125 290 5.8E-36 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_5284 1cd8708e08bfd01ad14414de950ab00e 291 PANTHER PTHR11071:SF165 133 267 5.7E-39 T 19-04-2016 AMED_8809 0062cd96350f9bd7c0b54691822ae5d2 419 PANTHER PTHR30480:SF3 52 418 4.3E-105 T 19-04-2016 AMED_8809 0062cd96350f9bd7c0b54691822ae5d2 419 Pfam PF07075 Protein of unknown function (DUF1343) 58 418 1.1E-122 T 19-04-2016 IPR008302 Uncharacterised conserved protein UCP016719 AMED_8809 0062cd96350f9bd7c0b54691822ae5d2 419 PIRSF PIRSF016719 5 419 2.1E-127 T 19-04-2016 IPR008302 Uncharacterised conserved protein UCP016719 AMED_8809 0062cd96350f9bd7c0b54691822ae5d2 419 PANTHER PTHR30480 52 418 4.3E-105 T 19-04-2016 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 Hamap MF_01416 ATP synthase subunit delta [atpD]. 97 273 14.223 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 Pfam PF00213 ATP synthase delta (OSCP) subunit 108 271 1.1E-35 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 233 252 - T 19-04-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 PRINTS PR00125 ATP synthase delta subunit signature 246 264 6.4E-10 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 PRINTS PR00125 ATP synthase delta subunit signature 101 120 6.4E-10 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 PRINTS PR00125 ATP synthase delta subunit signature 231 246 6.4E-10 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 PANTHER PTHR11910 107 274 4.3E-30 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 Gene3D G3DSA:1.10.520.20 107 179 2.0E-7 T 19-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain AMED_7778 48e101b905cdb2399566f44d87157ce5 274 PANTHER PTHR11910:SF1 107 274 4.3E-30 T 19-04-2016 AMED_7778 48e101b905cdb2399566f44d87157ce5 274 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 107 271 1.2E-24 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMED_1946 1d0d3ce1722229a9ecfe7272b1130bfa 202 Gene3D G3DSA:1.10.357.10 13 196 4.8E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1946 1d0d3ce1722229a9ecfe7272b1130bfa 202 SUPERFAMILY SSF46689 3 84 1.64E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1946 1d0d3ce1722229a9ecfe7272b1130bfa 202 PANTHER PTHR30328 3 197 1.4E-15 T 19-04-2016 AMED_1946 1d0d3ce1722229a9ecfe7272b1130bfa 202 PANTHER PTHR30328:SF11 3 197 1.4E-15 T 19-04-2016 AMED_1946 1d0d3ce1722229a9ecfe7272b1130bfa 202 SUPERFAMILY SSF48498 88 191 1.63E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1946 1d0d3ce1722229a9ecfe7272b1130bfa 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 64 2.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7734 c5f83c2cf9b47d96d8b21734b7b37293 96 PANTHER PTHR33215 1 96 7.2E-19 T 19-04-2016 AMED_7734 c5f83c2cf9b47d96d8b21734b7b37293 96 SUPERFAMILY SSF46689 4 93 1.15E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7734 c5f83c2cf9b47d96d8b21734b7b37293 96 Gene3D G3DSA:1.10.10.60 9 89 7.9E-23 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7734 c5f83c2cf9b47d96d8b21734b7b37293 96 Pfam PF01527 Transposase 1 79 1.1E-13 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_8917 c5f83c2cf9b47d96d8b21734b7b37293 96 PANTHER PTHR33215 1 96 7.2E-19 T 19-04-2016 AMED_8917 c5f83c2cf9b47d96d8b21734b7b37293 96 SUPERFAMILY SSF46689 4 93 1.15E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8917 c5f83c2cf9b47d96d8b21734b7b37293 96 Gene3D G3DSA:1.10.10.60 9 89 7.9E-23 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8917 c5f83c2cf9b47d96d8b21734b7b37293 96 Pfam PF01527 Transposase 1 79 1.1E-13 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_5574 96983b469eb6533a0590ded27db8359c 224 PANTHER PTHR34606:SF2 9 220 5.2E-28 T 19-04-2016 AMED_5574 96983b469eb6533a0590ded27db8359c 224 Pfam PF04972 BON domain 83 151 1.3E-11 T 19-04-2016 IPR007055 BON domain AMED_5574 96983b469eb6533a0590ded27db8359c 224 Pfam PF04972 BON domain 159 222 1.2E-10 T 19-04-2016 IPR007055 BON domain AMED_5574 96983b469eb6533a0590ded27db8359c 224 Pfam PF04972 BON domain 9 75 5.6E-14 T 19-04-2016 IPR007055 BON domain AMED_5574 96983b469eb6533a0590ded27db8359c 224 SMART SM00749 161 224 0.014 T 19-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria AMED_5574 96983b469eb6533a0590ded27db8359c 224 SMART SM00749 87 150 220.0 T 19-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria AMED_5574 96983b469eb6533a0590ded27db8359c 224 SMART SM00749 13 76 0.0016 T 19-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria AMED_5574 96983b469eb6533a0590ded27db8359c 224 PANTHER PTHR34606 9 220 5.2E-28 T 19-04-2016 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 201 4.3E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 Pfam PF00072 Response regulator receiver domain 9 120 3.9E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 SUPERFAMILY SSF52172 3 132 3.84E-29 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 Gene3D G3DSA:3.40.50.2300 6 153 4.5E-34 T 19-04-2016 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 PANTHER PTHR26402:SF458 7 201 1.6E-54 T 19-04-2016 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 SMART SM00448 7 120 9.7E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 PANTHER PTHR26402 7 201 1.6E-54 T 19-04-2016 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 Gene3D G3DSA:1.10.10.10 154 210 2.5E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 SUPERFAMILY SSF46894 143 209 1.67E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 SMART SM00421 147 204 3.1E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.9E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.9E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7025 efc1f3820bd26d14b5624d893e3f7501 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.9E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PANTHER PTHR23501 8 408 6.6E-110 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PANTHER PTHR23501 437 449 6.6E-110 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 4.2E-8 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 259 284 4.2E-8 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 388 407 4.2E-8 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 4.2E-8 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PANTHER PTHR23501:SF31 8 408 6.6E-110 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 PANTHER PTHR23501:SF31 437 449 6.6E-110 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 SUPERFAMILY SSF103473 240 437 7.85E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8128 6a0977319cfd631e9d35af49326589df 449 SUPERFAMILY SSF103473 3 195 7.85E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8128 6a0977319cfd631e9d35af49326589df 449 Gene3D G3DSA:1.20.1250.20 253 443 6.5E-13 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 Gene3D G3DSA:1.20.1250.20 8 198 8.0E-24 T 19-04-2016 AMED_8128 6a0977319cfd631e9d35af49326589df 449 Pfam PF07690 Major Facilitator Superfamily 18 397 4.4E-43 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7325 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_7325 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_7325 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7325 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7810 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_7810 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_7810 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7810 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7910 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_7910 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_7910 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7910 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5816 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_5816 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_5816 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5816 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1442 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_1442 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_1442 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1442 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1453 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_1453 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_1453 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1453 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5520 a596a0773e6a2cd5be1c8e4ed15103fd 107 Pfam PF01527 Transposase 4 84 4.3E-12 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_5520 a596a0773e6a2cd5be1c8e4ed15103fd 107 PANTHER PTHR33215 4 105 5.9E-20 T 19-04-2016 AMED_5520 a596a0773e6a2cd5be1c8e4ed15103fd 107 Gene3D G3DSA:1.10.10.60 11 95 9.8E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5520 a596a0773e6a2cd5be1c8e4ed15103fd 107 SUPERFAMILY SSF46689 5 97 9.14E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 Gene3D G3DSA:3.90.180.10 2 180 6.2E-52 T 19-04-2016 IPR011032 GroES-like AMED_6578 cd27a45321297c43cd608f2a8881381d 404 Pfam PF00107 Zinc-binding dehydrogenase 190 258 1.5E-11 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 SUPERFAMILY SSF50129 2 196 2.36E-57 T 19-04-2016 IPR011032 GroES-like AMED_6578 cd27a45321297c43cd608f2a8881381d 404 PANTHER PTHR11695:SF281 302 393 1.3E-119 T 19-04-2016 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 PANTHER PTHR11695:SF281 12 255 1.3E-119 T 19-04-2016 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 SUPERFAMILY SSF51735 156 268 5.26E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6578 cd27a45321297c43cd608f2a8881381d 404 SUPERFAMILY SSF51735 299 363 5.26E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6578 cd27a45321297c43cd608f2a8881381d 404 SMART SM00829 8 400 3.8E-4 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 Pfam PF13823 Alcohol dehydrogenase GroES-associated 2 23 1.2E-9 T 19-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated AMED_6578 cd27a45321297c43cd608f2a8881381d 404 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 142 4.1E-27 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 Gene3D G3DSA:3.40.50.720 181 257 5.7E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6578 cd27a45321297c43cd608f2a8881381d 404 Gene3D G3DSA:3.40.50.720 303 344 5.7E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6578 cd27a45321297c43cd608f2a8881381d 404 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 PANTHER PTHR11695 302 393 1.3E-119 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6578 cd27a45321297c43cd608f2a8881381d 404 PANTHER PTHR11695 12 255 1.3E-119 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_5360 bf48c2486059f196990929780be88d49 300 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 125 3.7E-20 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_5360 bf48c2486059f196990929780be88d49 300 PANTHER PTHR12358 7 140 2.7E-19 T 19-04-2016 AMED_5360 bf48c2486059f196990929780be88d49 300 Gene3D G3DSA:3.40.50.10330 49 115 6.3E-4 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_5360 bf48c2486059f196990929780be88d49 300 SUPERFAMILY SSF111331 8 297 8.94E-45 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_5360 bf48c2486059f196990929780be88d49 300 PANTHER PTHR12358:SF44 7 140 2.7E-19 T 19-04-2016 AMED_5360 bf48c2486059f196990929780be88d49 300 SMART SM00046 6 125 2.5E-4 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 SUPERFAMILY SSF56112 9 338 3.78E-73 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 Gene3D G3DSA:1.10.510.10 102 309 9.1E-43 T 19-04-2016 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 PANTHER PTHR24362:SF160 1 360 5.6E-98 T 19-04-2016 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 PANTHER PTHR24362 1 360 5.6E-98 T 19-04-2016 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 Gene3D G3DSA:3.30.200.20 4 96 2.4E-23 T 19-04-2016 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 Pfam PF00069 Protein kinase domain 13 261 8.9E-43 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_0052 dcdedad30bf02d07ee291cac7a83df6d 448 SMART SM00220 12 271 1.6E-55 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_3023 8b0578af3f503b9cd3222e2109c1e6bc 144 PANTHER PTHR10302 7 106 1.7E-24 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_3023 8b0578af3f503b9cd3222e2109c1e6bc 144 Hamap MF_00984 Single-stranded DNA-binding protein. 4 113 29.737 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_3023 8b0578af3f503b9cd3222e2109c1e6bc 144 Pfam PF00436 Single-strand binding protein family 6 106 1.5E-27 T 19-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 AMED_3023 8b0578af3f503b9cd3222e2109c1e6bc 144 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 123 3.4E-30 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_3023 8b0578af3f503b9cd3222e2109c1e6bc 144 Gene3D G3DSA:2.40.50.140 3 116 5.0E-39 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_3023 8b0578af3f503b9cd3222e2109c1e6bc 144 SUPERFAMILY SSF50249 6 133 3.18E-40 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_4937 f88d80403ab6cac269263141433bc00a 347 Gene3D G3DSA:3.40.50.1400 155 292 1.1E-45 T 19-04-2016 AMED_4937 f88d80403ab6cac269263141433bc00a 347 Hamap MF_00323 Ferrochelatase [hemH]. 2 311 30.71 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMED_4937 f88d80403ab6cac269263141433bc00a 347 TIGRFAM TIGR00109 hemH: ferrochelatase 39 310 6.1E-39 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMED_4937 f88d80403ab6cac269263141433bc00a 347 SUPERFAMILY SSF53800 3 317 4.41E-82 T 19-04-2016 AMED_4937 f88d80403ab6cac269263141433bc00a 347 PANTHER PTHR11108 5 310 9.9E-79 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMED_4937 f88d80403ab6cac269263141433bc00a 347 Pfam PF00762 Ferrochelatase 4 310 7.4E-95 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMED_4937 f88d80403ab6cac269263141433bc00a 347 Gene3D G3DSA:3.40.50.1400 3 154 1.4E-39 T 19-04-2016 AMED_4247 dc9f1cdf7a89904bda90818a0f95b46f 477 PANTHER PTHR12145:SF14 181 476 1.2E-59 T 19-04-2016 AMED_4247 dc9f1cdf7a89904bda90818a0f95b46f 477 Pfam PF03663 Glycosyl hydrolase family 76 157 475 9.8E-39 T 19-04-2016 IPR005198 Glycoside hydrolase, family 76 KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10 AMED_4247 dc9f1cdf7a89904bda90818a0f95b46f 477 Gene3D G3DSA:1.50.10.10 159 380 3.3E-38 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_4247 dc9f1cdf7a89904bda90818a0f95b46f 477 PANTHER PTHR12145 181 476 1.2E-59 T 19-04-2016 AMED_4247 dc9f1cdf7a89904bda90818a0f95b46f 477 SUPERFAMILY SSF48208 166 450 3.0E-40 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_0942 3be953efac73f80334e6067e1aaecae6 526 PANTHER PTHR14202:SF1 2 521 1.5E-143 T 19-04-2016 AMED_0942 3be953efac73f80334e6067e1aaecae6 526 SUPERFAMILY SSF53300 350 516 5.28E-13 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_0942 3be953efac73f80334e6067e1aaecae6 526 PANTHER PTHR14202 2 521 1.5E-143 T 19-04-2016 AMED_0942 3be953efac73f80334e6067e1aaecae6 526 SUPERFAMILY SSF140864 23 349 3.01E-47 T 19-04-2016 AMED_0942 3be953efac73f80334e6067e1aaecae6 526 Pfam PF05731 TROVE domain 226 349 5.9E-18 T 19-04-2016 IPR008858 TROVE domain GO:0003723 AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 507 515 8.9E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 527 546 8.9E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 452 463 8.9E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 Pfam PF00106 short chain dehydrogenase 378 566 9.0E-47 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PANTHER PTHR24320 363 583 4.7E-51 T 19-04-2016 AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 Pfam PF07993 Male sterility protein 6 234 1.1E-44 T 19-04-2016 IPR013120 Male sterility, NAD-binding Reactome: REACT_22258 AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 SUPERFAMILY SSF51735 373 594 2.42E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 514 542 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 Gene3D G3DSA:3.40.50.720 363 594 1.8E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 SUPERFAMILY SSF51735 1 363 1.09E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 501 517 1.2E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 452 463 1.2E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 527 546 1.2E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 378 395 1.2E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 Gene3D G3DSA:3.40.50.720 3 280 3.1E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8113 abe76f7f9c4e4e496894ecd81667efd1 664 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 377 561 2.9E-5 T 19-04-2016 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 SUPERFAMILY SSF63411 238 423 1.08E-23 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 Gene3D G3DSA:3.30.830.10 3 223 5.2E-47 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 Gene3D G3DSA:3.30.830.10 240 420 4.3E-19 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 Pfam PF05193 Peptidase M16 inactive domain 172 352 2.4E-24 T 19-04-2016 IPR007863 Peptidase M16, C-terminal AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 SUPERFAMILY SSF63411 3 221 4.25E-49 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 PANTHER PTHR11851 4 430 1.9E-99 T 19-04-2016 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 PANTHER PTHR11851:SF136 4 430 1.9E-99 T 19-04-2016 AMED_1150 9a65a2ecc987dc92982c14fca812fd87 430 Pfam PF00675 Insulinase (Peptidase family M16) 16 131 3.5E-18 T 19-04-2016 IPR011765 Peptidase M16, N-terminal AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PANTHER PTHR19375:SF173 2 624 0.0 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF100934 481 587 6.15E-18 T 19-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF53067 162 356 2.12E-63 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 168 181 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 4 577 1.7E-277 T 19-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.90.640.10 202 288 3.6E-28 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 174 184 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 362 381 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 307 323 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 443 459 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 114 134 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 339 359 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.7E-75 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF100920 358 514 4.45E-60 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.420.40 292 333 1.3E-33 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.420.40 167 201 1.3E-33 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:2.60.34.10 364 506 3.3E-74 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Pfam PF00012 Hsp70 protein 4 79 6.2E-29 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Pfam PF00012 Hsp70 protein 81 577 4.2E-217 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 SUPERFAMILY SSF53067 4 160 2.75E-57 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:1.20.1270.10 507 577 7.5E-26 T 19-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.420.40 101 166 9.8E-58 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.420.40 4 38 9.8E-58 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Gene3D G3DSA:3.30.30.30 39 100 3.2E-16 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 PANTHER PTHR19375 2 624 0.0 T 19-04-2016 AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 310 324 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_9166 5fd82ba190083b15c323be5f9ab60e4e 624 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 620 36.151 T 19-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 AMED_0572 757464a75f1a5b8016ab7c42eb292c32 322 Gene3D G3DSA:2.130.10.10 33 246 8.3E-37 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_0572 757464a75f1a5b8016ab7c42eb292c32 322 Gene3D G3DSA:2.120.10.30 253 318 8.1E-4 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_0572 757464a75f1a5b8016ab7c42eb292c32 322 PANTHER PTHR13833 6 237 5.4E-19 T 19-04-2016 AMED_0572 757464a75f1a5b8016ab7c42eb292c32 322 SUPERFAMILY SSF51004 17 268 7.46E-32 T 19-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AMED_4506 e54deb7b7fcb7581afff6721bbb13db4 404 Gene3D G3DSA:3.40.50.1110 204 400 1.2E-28 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4506 e54deb7b7fcb7581afff6721bbb13db4 404 SUPERFAMILY SSF52266 204 400 3.66E-44 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4506 e54deb7b7fcb7581afff6721bbb13db4 404 PANTHER PTHR30383:SF3 49 401 3.6E-106 T 19-04-2016 AMED_4506 e54deb7b7fcb7581afff6721bbb13db4 404 PANTHER PTHR30383 49 401 3.6E-106 T 19-04-2016 AMED_4506 e54deb7b7fcb7581afff6721bbb13db4 404 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 206 390 4.7E-25 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 63 226 2.9E-22 T 19-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 SUPERFAMILY SSF53067 1 228 5.89E-41 T 19-04-2016 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 237 425 4.1E-29 T 19-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 SUPERFAMILY SSF53067 235 454 7.56E-36 T 19-04-2016 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 PANTHER PTHR10196 1 463 5.3E-182 T 19-04-2016 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 PANTHER PTHR10196:SF6 1 463 5.3E-182 T 19-04-2016 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 Gene3D G3DSA:3.30.420.40 2 224 6.5E-20 T 19-04-2016 AMED_4547 f8a321005573e9f89efa7f5a9db556d2 466 Gene3D G3DSA:3.30.420.40 336 455 2.1E-17 T 19-04-2016 AMED_1854 ea0f26de0f397f81d468c9c258689e82 318 PANTHER PTHR30193 2 311 5.4E-62 T 19-04-2016 AMED_1854 ea0f26de0f397f81d468c9c258689e82 318 Gene3D G3DSA:1.10.3720.10 78 312 3.0E-47 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1854 ea0f26de0f397f81d468c9c258689e82 318 SUPERFAMILY SSF161098 72 307 1.09E-41 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1854 ea0f26de0f397f81d468c9c258689e82 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 311 2.0E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1854 ea0f26de0f397f81d468c9c258689e82 318 PANTHER PTHR30193:SF6 2 311 5.4E-62 T 19-04-2016 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 SUPERFAMILY SSF53850 91 290 2.17E-27 T 19-04-2016 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 Gene3D G3DSA:3.40.190.10 172 261 9.1E-17 T 19-04-2016 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 Gene3D G3DSA:3.40.190.10 91 171 1.4E-12 T 19-04-2016 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 Gene3D G3DSA:1.10.10.10 3 84 1.7E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 PANTHER PTHR30346 1 288 1.4E-61 T 19-04-2016 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.9E-23 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.6E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.6E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.6E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 Pfam PF03466 LysR substrate binding domain 88 289 1.4E-30 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6929 be30bd16c56f281582fb70ed50ba4ec2 292 SUPERFAMILY SSF46785 3 82 8.82E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1749 bde65b401992b6dba965e174799e2121 225 Gene3D G3DSA:3.40.470.10 6 224 6.7E-86 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_1749 bde65b401992b6dba965e174799e2121 225 PANTHER PTHR11264:SF5 1 225 2.3E-147 T 19-04-2016 AMED_1749 bde65b401992b6dba965e174799e2121 225 PANTHER PTHR11264 1 225 2.3E-147 T 19-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 AMED_1749 bde65b401992b6dba965e174799e2121 225 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 61 70 - T 19-04-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 AMED_1749 bde65b401992b6dba965e174799e2121 225 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 11 223 34.684 T 19-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 AMED_1749 bde65b401992b6dba965e174799e2121 225 SMART SM00986 53 212 5.9E-35 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_1749 bde65b401992b6dba965e174799e2121 225 SMART SM00987 53 212 5.9E-35 T 19-04-2016 AMED_1749 bde65b401992b6dba965e174799e2121 225 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 13 216 1.0E-59 T 19-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 AMED_1749 bde65b401992b6dba965e174799e2121 225 Pfam PF03167 Uracil DNA glycosylase superfamily 55 211 2.8E-19 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_1749 bde65b401992b6dba965e174799e2121 225 SUPERFAMILY SSF52141 9 223 7.41E-76 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 PANTHER PTHR11699 1 470 3.4E-271 T 19-04-2016 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 Pfam PF00171 Aldehyde dehydrogenase family 12 469 3.5E-160 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 SUPERFAMILY SSF53720 3 470 3.93E-158 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 PANTHER PTHR11699:SF109 1 470 3.4E-271 T 19-04-2016 IPR015657 Aminobutyraldehyde dehydrogenase KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3|UniPathway: UPA00188 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 Gene3D G3DSA:3.40.605.10 3 260 7.3E-91 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_1201 698e072c9a0dc428b86f78d64d6a6219 473 Gene3D G3DSA:3.40.309.10 261 449 1.4E-63 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_8775 1bc035e34737a2de7354579555c35897 442 SUPERFAMILY SSF48452 188 394 1.23E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8775 1bc035e34737a2de7354579555c35897 442 Gene3D G3DSA:1.25.40.10 188 301 1.8E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3548 a87e54933bc6108f6d7791ec3e5006e8 406 Gene3D G3DSA:1.20.1250.20 225 396 1.4E-9 T 19-04-2016 AMED_3548 a87e54933bc6108f6d7791ec3e5006e8 406 SUPERFAMILY SSF103473 10 403 3.4E-42 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3548 a87e54933bc6108f6d7791ec3e5006e8 406 Gene3D G3DSA:1.20.1250.20 23 206 4.9E-23 T 19-04-2016 AMED_3548 a87e54933bc6108f6d7791ec3e5006e8 406 PANTHER PTHR23501 11 406 2.1E-15 T 19-04-2016 AMED_3548 a87e54933bc6108f6d7791ec3e5006e8 406 Pfam PF07690 Major Facilitator Superfamily 29 281 8.1E-20 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 PIRSF PIRSF029347 1 385 3.4E-145 T 19-04-2016 IPR014555 RecF-like AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 250 345 2.7E-17 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 PANTHER PTHR32182 1 367 5.6E-71 T 19-04-2016 AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 Gene3D G3DSA:3.40.50.300 1 132 3.4E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 Gene3D G3DSA:3.40.50.300 191 355 3.4E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 SUPERFAMILY SSF52540 231 352 5.91E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 SUPERFAMILY SSF52540 1 126 5.91E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 PANTHER PTHR32182:SF13 1 367 5.6E-71 T 19-04-2016 AMED_1312 4afa5486f7dbccd087a63a88b0e0c29a 385 Pfam PF13175 AAA ATPase domain 1 50 1.3E-10 T 19-04-2016 AMED_7705 0c30acd0d4c61e4c7cb44669e2345681 255 Gene3D G3DSA:3.60.15.10 2 247 2.8E-46 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7705 0c30acd0d4c61e4c7cb44669e2345681 255 SMART SM00849 18 205 0.0064 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7705 0c30acd0d4c61e4c7cb44669e2345681 255 Pfam PF12706 Beta-lactamase superfamily domain 44 224 5.9E-22 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7705 0c30acd0d4c61e4c7cb44669e2345681 255 PANTHER PTHR12553 1 242 2.3E-36 T 19-04-2016 AMED_7705 0c30acd0d4c61e4c7cb44669e2345681 255 SUPERFAMILY SSF56281 2 237 1.57E-43 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 2.9E-12 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 35 43 2.9E-12 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 61 72 2.9E-12 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 73 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 7 311 1.3E-92 T 19-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PANTHER PTHR10992 2 177 1.4E-75 T 19-04-2016 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PANTHER PTHR10992 205 310 1.4E-75 T 19-04-2016 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 Pfam PF00561 alpha/beta hydrolase fold 36 183 8.5E-25 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PIRSF PIRSF006431 1 314 1.8E-110 T 19-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 Gene3D G3DSA:3.40.50.1820 6 303 4.5E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 SUPERFAMILY SSF53474 2 297 1.8E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PANTHER PTHR10992:SF860 2 177 1.4E-75 T 19-04-2016 AMED_4967 9dda8c1b95a4591d20bb21af7a414736 315 PANTHER PTHR10992:SF860 205 310 1.4E-75 T 19-04-2016 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 SUPERFAMILY SSF103473 6 207 9.94E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 SUPERFAMILY SSF103473 254 425 9.94E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 SUPERFAMILY SSF103473 466 492 9.94E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 PANTHER PTHR23501:SF65 15 493 1.8E-174 T 19-04-2016 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 Gene3D G3DSA:1.20.1250.20 24 200 1.1E-27 T 19-04-2016 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 PANTHER PTHR23501 15 493 1.8E-174 T 19-04-2016 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 Gene3D G3DSA:1.20.1250.20 275 426 6.9E-18 T 19-04-2016 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 Gene3D G3DSA:1.20.1250.20 468 494 6.9E-18 T 19-04-2016 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 Pfam PF07690 Major Facilitator Superfamily 27 415 2.2E-49 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3416 7a778d9ebaae11742c3dc01ef6e54834 496 ProSitePatterns PS00216 Sugar transport proteins signature 1. 74 91 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_8620 6b86fb69409d5a57b419ac7ac8999149 159 Pfam PF07617 Protein of unknown function (DUF1579) 12 156 2.4E-10 T 19-04-2016 IPR011473 Protein of unknown function DUF1579 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 SMART SM00829 14 317 2.9E-28 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 93 2.2E-7 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 Gene3D G3DSA:3.40.50.720 143 286 6.3E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 Pfam PF13602 Zinc-binding dehydrogenase 196 317 8.8E-20 T 19-04-2016 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 PANTHER PTHR11695 19 320 1.7E-81 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 SUPERFAMILY SSF51735 116 266 7.66E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 PANTHER PTHR11695:SF28 19 320 1.7E-81 T 19-04-2016 AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 Gene3D G3DSA:3.90.180.10 5 142 3.5E-30 T 19-04-2016 IPR011032 GroES-like AMED_3125 02d1f79853106cfee5b50127f30ed85f 320 SUPERFAMILY SSF50129 5 152 1.05E-29 T 19-04-2016 IPR011032 GroES-like AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 342 498 7.1E-35 T 19-04-2016 IPR001570 Peptidase M4, C-terminal GO:0004222 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 SMART SM00495 624 669 1.7E-4 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Gene3D G3DSA:2.10.10.20 621 668 8.7E-11 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 SUPERFAMILY SSF51055 620 671 5.3E-9 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 PANTHER PTHR33794:SF2 80 500 3.4E-68 T 19-04-2016 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Gene3D G3DSA:3.10.170.10 195 335 2.2E-25 T 19-04-2016 IPR013856 Peptidase M4 domain GO:0004222 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 SUPERFAMILY SSF55486 191 498 1.21E-58 T 19-04-2016 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 PANTHER PTHR33794 80 500 3.4E-68 T 19-04-2016 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF03413 Peptidase propeptide and YPEB domain 125 188 8.7E-6 T 19-04-2016 IPR025711 PepSY domain AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF02839 Carbohydrate binding domain 625 666 8.8E-7 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 410 426 1.3E-6 T 19-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 289 309 1.3E-6 T 19-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 345 356 1.3E-6 T 19-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 196 331 5.0E-27 T 19-04-2016 IPR013856 Peptidase M4 domain GO:0004222 AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 76 104 6.3E-6 T 19-04-2016 IPR011096 FTP domain AMED_1039 643e960d898fa8de2aacb18cd0fb2cc7 672 Gene3D G3DSA:1.10.390.10 342 498 1.8E-40 T 19-04-2016 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 Pfam PF00672 HAMP domain 168 238 5.0E-15 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 SUPERFAMILY SSF47384 235 314 1.35E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 Gene3D G3DSA:3.30.565.10 302 478 2.1E-41 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 SMART SM00388 249 316 3.3E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PANTHER PTHR24423 112 122 6.9E-74 T 19-04-2016 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PANTHER PTHR24423 181 476 6.9E-74 T 19-04-2016 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 SUPERFAMILY SSF55874 308 477 5.63E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PANTHER PTHR24423:SF535 112 122 6.9E-74 T 19-04-2016 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PANTHER PTHR24423:SF535 181 476 6.9E-74 T 19-04-2016 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 SMART SM00304 187 241 2.4E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 477 2.4E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 SUPERFAMILY SSF158472 190 238 3.27E-8 T 19-04-2016 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 315 9.1E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 SMART SM00387 366 479 3.4E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 6.3E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 431 6.3E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 417 6.3E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 6.3E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3158 49ddc3ef90a7ef054df7dc67f9b9639a 482 Gene3D G3DSA:1.10.287.130 243 301 1.2E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.40.320 186 308 9.7E-30 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF16355 Domain of unknown function (DUF4982) 642 736 7.9E-20 T 19-04-2016 IPR032311 Domain of unknown function DUF4982 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 SUPERFAMILY SSF49785 35 197 2.07E-43 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PANTHER PTHR10066:SF71 2 524 1.3E-177 T 19-04-2016 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:3.20.20.80 309 626 2.0E-65 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.120.260 876 1000 3.5E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.120.260 15 185 9.7E-41 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 40 193 1.4E-16 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PANTHER PTHR10066:SF71 543 667 1.3E-177 T 19-04-2016 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PANTHER PTHR10066 543 667 1.3E-177 T 19-04-2016 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 422 437 2.6E-12 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 352 370 2.6E-12 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 321 335 2.6E-12 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PRINTS PR00132 Glycosyl hydrolase family 2 signature 126 141 2.6E-12 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 317 531 3.5E-26 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.40.1560 707 752 1.1E-23 T 19-04-2016 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Gene3D G3DSA:2.60.40.1560 628 671 1.1E-23 T 19-04-2016 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 PANTHER PTHR10066 2 524 1.3E-177 T 19-04-2016 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 Pfam PF00703 Glycosyl hydrolases family 2 199 309 3.9E-17 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 SUPERFAMILY SSF49303 203 309 1.06E-19 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3130 a79c5c0cb3a883eb5d2729910aa41696 1012 SUPERFAMILY SSF51445 306 623 9.5E-62 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 Gene3D G3DSA:1.10.287.130 195 262 1.5E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 PANTHER PTHR24423 143 414 1.1E-40 T 19-04-2016 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 SMART SM00304 149 201 1.5E-4 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 SUPERFAMILY SSF47384 186 263 4.51E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 SMART SM00387 308 411 1.4E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 SUPERFAMILY SSF55874 268 410 5.5E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 310 401 4.5E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 Gene3D G3DSA:3.30.565.10 269 413 1.1E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 359 3.6E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 373 3.6E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 391 3.6E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0981 fb6942d7bc6a37115406a8f3285d32a1 427 Pfam PF00672 HAMP domain 130 196 9.9E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 Gene3D G3DSA:3.90.180.10 3 179 2.4E-67 T 19-04-2016 IPR011032 GroES-like AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 Pfam PF00107 Zinc-binding dehydrogenase 186 308 2.1E-18 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 Gene3D G3DSA:3.40.50.720 180 292 7.1E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 PANTHER PTHR11695 17 343 9.4E-181 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 SUPERFAMILY SSF51735 151 312 7.45E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 144 2.9E-29 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 SMART SM00829 14 342 6.4E-7 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 SUPERFAMILY SSF50129 7 173 2.28E-55 T 19-04-2016 IPR011032 GroES-like AMED_0444 58771949d59b39409fe6e739fa7ecfcb 349 PANTHER PTHR11695:SF587 17 343 9.4E-181 T 19-04-2016 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 289 4.7E-16 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_2102 32a3694c75f18b9931596ea7d224894b 291 SUPERFAMILY SSF55048 113 162 4.05E-10 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 Pfam PF00698 Acyl transferase domain 20 202 2.7E-23 T 19-04-2016 IPR014043 Acyl transferase AMED_2102 32a3694c75f18b9931596ea7d224894b 291 Gene3D G3DSA:3.40.366.10 11 105 7.5E-45 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 Gene3D G3DSA:3.40.366.10 174 274 7.5E-45 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 SUPERFAMILY SSF52151 1 105 1.02E-52 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 SUPERFAMILY SSF52151 167 273 1.02E-52 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 PANTHER PTHR10982 1 269 1.2E-64 T 19-04-2016 AMED_2102 32a3694c75f18b9931596ea7d224894b 291 Gene3D G3DSA:3.30.70.250 108 173 7.3E-17 T 19-04-2016 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 Pfam PF00483 Nucleotidyl transferase 3 212 3.4E-16 T 19-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 444 36.315 T 19-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 Gene3D G3DSA:3.90.550.10 1 243 4.6E-68 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 387 420 6.7E-4 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 261 293 0.0011 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 PANTHER PTHR22572:SF115 1 441 4.0E-189 T 19-04-2016 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 1 445 2.5E-159 T 19-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 Gene3D G3DSA:2.160.10.10 249 433 5.0E-40 T 19-04-2016 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 SUPERFAMILY SSF53448 2 299 8.56E-52 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 PANTHER PTHR22572 1 441 4.0E-189 T 19-04-2016 AMED_8234 999737cb7baa4c0207d13d85d2e1cb1d 473 SUPERFAMILY SSF51161 237 433 2.97E-39 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_6019 4f37474d680b46d1e4602d5230c4d11d 417 Gene3D G3DSA:1.50.10.110 55 406 2.9E-77 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_6019 4f37474d680b46d1e4602d5230c4d11d 417 PANTHER PTHR41379:SF1 1 379 1.4E-75 T 19-04-2016 AMED_6019 4f37474d680b46d1e4602d5230c4d11d 417 PANTHER PTHR41379 1 379 1.4E-75 T 19-04-2016 AMED_6019 4f37474d680b46d1e4602d5230c4d11d 417 SUPERFAMILY SSF48230 79 353 3.66E-54 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_6019 4f37474d680b46d1e4602d5230c4d11d 417 Pfam PF05426 Alginate lyase 73 356 1.4E-79 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PIRSF PIRSF000126 1 258 1.3E-66 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PANTHER PTHR24322:SF513 11 184 2.7E-40 T 19-04-2016 AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.9E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.9E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.9E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.9E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.9E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 Gene3D G3DSA:3.40.50.720 8 242 1.4E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 Pfam PF00106 short chain dehydrogenase 10 192 2.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 PANTHER PTHR24322 11 184 2.7E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9152 7fee9189c55bf8180a8db160b45a42da 259 SUPERFAMILY SSF51735 8 235 6.44E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1879 1963 3.2E-15 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:2.30.38.10 301 380 5.8E-18 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF08659 KR domain 2318 2476 5.6E-22 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 PANTHER PTHR24095:SF137 1 1420 1.1E-242 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.30.300.30 386 498 4.4E-24 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF51735 2104 2302 5.51E-7 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF56801 4 507 1.44E-114 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 PANTHER PTHR24095 1 1420 1.1E-242 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF47336 2545 2621 1.57E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SMART SM00823 Phosphopantetheine attachment site 1442 1509 0.01 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SMART SM00823 Phosphopantetheine attachment site 2544 2600 0.0062 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1762 1876 1.2E-35 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF53474 2614 2844 5.9E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.50.720 2314 2459 2.1E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.50.980 961 1118 3.6E-25 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.50.980 4 158 9.1E-33 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:1.10.1200.10 499 561 5.9E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:1.10.1200.10 1443 1508 1.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF56801 955 1427 2.88E-98 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:1.10.1200.10 2548 2582 6.2E-4 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.50.980 1119 1263 5.8E-23 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.50.980 167 300 2.5E-32 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 29 414 1.1E-98 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SMART SM00825 Beta-ketoacyl synthase 1524 1925 5.4E-133 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00975 Thioesterase domain 2632 2765 1.9E-17 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF47336 1444 1537 1.23E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF52777 742 952 1.56E-29 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 ProSitePatterns PS00455 Putative AMP-binding domain signature. 135 146 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00668 Condensation domain 577 825 2.9E-22 T 19-04-2016 IPR001242 Condensation domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.47.10 1524 1767 3.3E-65 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2318 2477 1.8E-21 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00550 Phosphopantetheine attachment site 496 558 2.5E-4 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00550 Phosphopantetheine attachment site 2547 2596 1.2E-6 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00550 Phosphopantetheine attachment site 1444 1505 9.1E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.47.10 1768 1924 2.0E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2568 2583 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 ProSitePatterns PS00012 Phosphopantetheine attachment site. 518 533 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF53901 1520 1872 8.97E-74 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF53901 1900 1922 8.97E-74 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:2.30.38.10 1264 1337 2.8E-12 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF47336 491 590 2.36E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF13745 HxxPF-repeated domain 865 928 1.2E-7 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00501 AMP-binding enzyme 10 390 4.2E-70 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00501 AMP-binding enzyme 967 1344 1.1E-59 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 1667 1683 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF52777 581 724 7.23E-29 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.40.50.1820 2583 2844 1.3E-45 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1522 1754 1.8E-59 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Gene3D G3DSA:3.30.300.30 1338 1425 5.9E-19 T 19-04-2016 AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF13193 AMP-binding enzyme C-terminal domain 1353 1420 3.9E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 Pfam PF13193 AMP-binding enzyme C-terminal domain 398 468 5.9E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3962 a1dce9ccfe8807cb4ca6ad71d3620f36 2846 SUPERFAMILY SSF51735 2314 2528 7.65E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8627 401a1a6bfe65a8a126f7e4e50338a33c 175 SUPERFAMILY SSF101898 20 175 1.26E-31 T 19-04-2016 AMED_8627 401a1a6bfe65a8a126f7e4e50338a33c 175 Pfam PF01436 NHL repeat 65 91 2.6E-7 T 19-04-2016 IPR001258 NHL repeat GO:0005515 AMED_8627 401a1a6bfe65a8a126f7e4e50338a33c 175 Pfam PF01436 NHL repeat 23 50 2.7E-7 T 19-04-2016 IPR001258 NHL repeat GO:0005515 AMED_8627 401a1a6bfe65a8a126f7e4e50338a33c 175 Gene3D G3DSA:2.120.10.30 12 174 8.4E-39 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8627 401a1a6bfe65a8a126f7e4e50338a33c 175 PANTHER PTHR24103 11 171 6.2E-27 T 19-04-2016 AMED_8627 401a1a6bfe65a8a126f7e4e50338a33c 175 PANTHER PTHR24103:SF378 11 171 6.2E-27 T 19-04-2016 AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 320 1.0E-74 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 Gene3D G3DSA:3.40.50.1100 62 146 6.3E-43 T 19-04-2016 AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 PIRSF PIRSF038945 1 352 8.4E-166 T 19-04-2016 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1|UniPathway: UPA00050 AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 SUPERFAMILY SSF53686 4 330 4.98E-102 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 - T 19-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 TIGRFAM TIGR00260 thrC: threonine synthase 10 326 2.6E-91 T 19-04-2016 IPR004450 Threonine synthase-like AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 PANTHER PTHR10314 1 330 1.1E-135 T 19-04-2016 AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 Gene3D G3DSA:3.40.50.1100 147 329 1.6E-49 T 19-04-2016 AMED_7794 5c4ba85ac6313fbd4a7b2c700662daec 353 PANTHER PTHR10314:SF5 1 330 1.1E-135 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF00582 Universal stress protein family 241 362 8.1E-6 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:1.20.120.620 387 488 3.1E-22 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 SMART SM00387 727 836 4.0E-24 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 SUPERFAMILY SSF47384 607 686 9.81E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 SMART SM00388 618 686 6.5E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 11 220 2.5E-98 T 19-04-2016 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PANTHER PTHR24423 530 570 4.4E-114 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PANTHER PTHR24423 598 833 4.4E-114 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF13493 Domain of unknown function (DUF4118) 391 495 2.1E-26 T 19-04-2016 IPR025201 Sensor protein KdpD, transmembrane domain AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 762 776 2.2E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 820 833 2.2E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 796 814 2.2E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF00512 His Kinase A (phospho-acceptor) domain 619 685 2.6E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:3.40.50.300 11 219 6.9E-99 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 SUPERFAMILY SSF52402 241 362 5.58E-13 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 728 833 1.3E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PANTHER PTHR24423 12 187 4.4E-114 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:3.40.50.620 235 362 1.2E-15 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PANTHER PTHR24423:SF562 12 187 4.4E-114 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PANTHER PTHR24423:SF562 530 570 4.4E-114 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 PANTHER PTHR24423:SF562 598 833 4.4E-114 T 19-04-2016 AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:3.30.565.10 672 835 4.5E-32 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 SUPERFAMILY SSF55874 675 837 1.2E-31 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1896 be58e5126207e7b0a3024f2c81fb17d4 845 Gene3D G3DSA:1.10.287.130 609 671 4.8E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1580 ba370200d930b973a00b86b6300081b5 241 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 213 2.9E-24 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_1580 ba370200d930b973a00b86b6300081b5 241 PANTHER PTHR11071 72 212 1.3E-36 T 19-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 AMED_1580 ba370200d930b973a00b86b6300081b5 241 Gene3D G3DSA:2.40.100.10 65 216 3.6E-32 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_1580 ba370200d930b973a00b86b6300081b5 241 PANTHER PTHR11071:SF165 72 212 1.3E-36 T 19-04-2016 AMED_1580 ba370200d930b973a00b86b6300081b5 241 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 176 5.7E-7 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_1580 ba370200d930b973a00b86b6300081b5 241 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 96 5.7E-7 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_1580 ba370200d930b973a00b86b6300081b5 241 SUPERFAMILY SSF50891 68 215 6.43E-33 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_8600 b957ffbfc525ebcb840c492c076e4f39 119 Pfam PF01638 HxlR-like helix-turn-helix 20 106 1.6E-27 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_8600 b957ffbfc525ebcb840c492c076e4f39 119 PANTHER PTHR33204:SF6 1 117 2.2E-41 T 19-04-2016 AMED_8600 b957ffbfc525ebcb840c492c076e4f39 119 SUPERFAMILY SSF46785 9 117 2.55E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8600 b957ffbfc525ebcb840c492c076e4f39 119 Gene3D G3DSA:1.10.10.10 7 117 7.7E-43 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8600 b957ffbfc525ebcb840c492c076e4f39 119 PANTHER PTHR33204 1 117 2.2E-41 T 19-04-2016 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 PANTHER PTHR21090 4 406 7.2E-136 T 19-04-2016 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 Gene3D G3DSA:3.65.10.10 10 220 1.7E-57 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 PANTHER PTHR21090:SF5 4 406 7.2E-136 T 19-04-2016 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 4 406 3.7E-120 T 19-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 SUPERFAMILY SSF55205 4 406 3.27E-107 T 19-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 Gene3D G3DSA:3.65.10.10 221 403 1.6E-61 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 1 409 28.791 T 19-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 4 403 6.4E-107 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 ProSitePatterns PS00885 EPSP synthase signature 2. 322 340 - T 19-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_7772 b756e2f2b0cca1f61227c24cb6a856ba 412 PIRSF PIRSF000505 2 410 3.2E-127 T 19-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_3089 461e12d43280c66276711a31adf20d79 355 Pfam PF13407 Periplasmic binding protein domain 41 299 2.2E-50 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_3089 461e12d43280c66276711a31adf20d79 355 PANTHER PTHR32196:SF9 37 299 5.2E-28 T 19-04-2016 AMED_3089 461e12d43280c66276711a31adf20d79 355 Gene3D G3DSA:3.40.50.2300 40 155 6.5E-27 T 19-04-2016 AMED_3089 461e12d43280c66276711a31adf20d79 355 PANTHER PTHR32196 37 299 5.2E-28 T 19-04-2016 AMED_3089 461e12d43280c66276711a31adf20d79 355 Gene3D G3DSA:3.40.50.2300 156 311 5.0E-38 T 19-04-2016 AMED_3089 461e12d43280c66276711a31adf20d79 355 SUPERFAMILY SSF53822 39 303 1.52E-58 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5715 3171763ec967cea2d2e713255e2cdcdf 489 SUPERFAMILY SSF116726 418 479 4.84E-9 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_5715 3171763ec967cea2d2e713255e2cdcdf 489 PANTHER PTHR32507:SF7 4 475 3.6E-76 T 19-04-2016 IPR030151 K(+)/H(+) antiporter NhaP GO:0005451|GO:0006813|GO:0016021 AMED_5715 3171763ec967cea2d2e713255e2cdcdf 489 Gene3D G3DSA:3.30.70.1450 421 477 6.9E-6 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_5715 3171763ec967cea2d2e713255e2cdcdf 489 Pfam PF00999 Sodium/hydrogen exchanger family 14 389 3.0E-54 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_5715 3171763ec967cea2d2e713255e2cdcdf 489 PANTHER PTHR32507 4 475 3.6E-76 T 19-04-2016 AMED_5715 3171763ec967cea2d2e713255e2cdcdf 489 Pfam PF02080 TrkA-C domain 419 476 1.4E-9 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_5869 bc98fbd9f9cec4c1c2b923b117be52c8 317 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 35 48 - T 19-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMED_5869 bc98fbd9f9cec4c1c2b923b117be52c8 317 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 291 7.5E-68 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_5869 bc98fbd9f9cec4c1c2b923b117be52c8 317 SUPERFAMILY SSF53686 4 292 6.42E-75 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_5869 bc98fbd9f9cec4c1c2b923b117be52c8 317 Gene3D G3DSA:3.40.50.1100 60 299 4.8E-63 T 19-04-2016 AMED_5869 bc98fbd9f9cec4c1c2b923b117be52c8 317 PANTHER PTHR10314 1 299 6.2E-79 T 19-04-2016 AMED_5869 bc98fbd9f9cec4c1c2b923b117be52c8 317 PANTHER PTHR10314:SF17 1 299 6.2E-79 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:2.20.25.90 256 305 2.5E-9 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 20 97 1.2E-14 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 SMART SM00926 253 307 5.5E-4 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 23 674 5.6E-160 T 19-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF54862 100 248 9.21E-31 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 170 180 - T 19-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 49 66 - T 19-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 PANTHER PTHR11615:SF166 401 463 9.2E-256 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 PANTHER PTHR11615:SF166 21 326 9.2E-256 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 PANTHER PTHR11615:SF166 502 816 9.2E-256 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF54292 20 96 1.26E-16 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF53706 244 749 1.57E-72 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 108 146 8.7E-16 T 19-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 122 134 - T 19-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 PANTHER PTHR11615 401 463 9.2E-256 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 PANTHER PTHR11615 21 326 9.2E-256 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 PANTHER PTHR11615 502 816 9.2E-256 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.40.50.740 310 385 4.4E-37 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.40.50.740 510 696 4.4E-37 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:2.40.40.20 728 804 7.4E-4 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.10.20.30 7 93 6.6E-6 T 19-04-2016 IPR012675 Beta-grasp domain AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 SUPERFAMILY SSF50692 727 804 6.53E-5 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF00384 Molybdopterin oxidoreductase 606 656 3.9E-5 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Pfam PF00384 Molybdopterin oxidoreductase 310 460 6.0E-13 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 Gene3D G3DSA:3.40.228.10 395 482 6.0E-4 T 19-04-2016 AMED_0526 1675f7d242b7f297f7da9c55e8a0fac4 823 SMART SM00929 107 147 6.7E-19 T 19-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 AMED_4612 98c88fa1ecf93aba1e6a669745762555 314 Pfam PF01896 DNA primase small subunit 136 258 3.2E-8 T 19-04-2016 IPR002755 DNA primase, small subunit GO:0003896|GO:0006269 AMED_4612 98c88fa1ecf93aba1e6a669745762555 314 PANTHER PTHR10459 48 305 1.3E-96 T 19-04-2016 AMED_4612 98c88fa1ecf93aba1e6a669745762555 314 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 15 262 3.0E-69 T 19-04-2016 IPR014145 DNA ligase D, polymerase domain AMED_4612 98c88fa1ecf93aba1e6a669745762555 314 PANTHER PTHR10459:SF36 48 305 1.3E-96 T 19-04-2016 AMED_2964 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF52374 13 210 4.46E-123 T 19-04-2016 AMED_2964 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF52374 416 657 4.46E-123 T 19-04-2016 AMED_2964 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:1.10.730.10 667 840 1.3E-41 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:3.90.740.10 241 419 7.8E-56 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF47323 679 906 6.17E-44 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 60 71 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 11 1046 13.828 T 19-04-2016 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5 AMED_2964 259107514e137e1ae48401ef915c312a 1052 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 26 658 1.2E-174 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 543 556 6.6E-32 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 414 429 6.6E-32 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 240 263 6.6E-32 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 53 64 6.6E-32 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 583 592 6.6E-32 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 860 2.8E-251 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF50677 216 395 4.29E-47 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:3.40.50.620 14 206 1.8E-139 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2964 259107514e137e1ae48401ef915c312a 1052 Gene3D G3DSA:3.40.50.620 420 655 1.8E-139 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2964 259107514e137e1ae48401ef915c312a 1052 PANTHER PTHR11946 4 261 0.0 T 19-04-2016 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PANTHER PTHR11946 284 943 0.0 T 19-04-2016 AMED_2964 259107514e137e1ae48401ef915c312a 1052 Pfam PF08264 Anticodon-binding domain of tRNA 709 846 6.7E-23 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 SUPERFAMILY SSF47323 968 1049 1.7E-5 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PANTHER PTHR11946:SF87 4 261 0.0 T 19-04-2016 AMED_2964 259107514e137e1ae48401ef915c312a 1052 PANTHER PTHR11946:SF87 284 943 0.0 T 19-04-2016 AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 158 7.9E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 7.9E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 127 7.9E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 126 154 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7163 684e7c593c572b64179f827c928e11ed 243 Gene3D G3DSA:3.40.50.720 1 240 4.9E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7163 684e7c593c572b64179f827c928e11ed 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 238 9.9E-43 T 19-04-2016 AMED_7163 684e7c593c572b64179f827c928e11ed 243 PANTHER PTHR24322 139 174 1.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 PANTHER PTHR24322 3 123 1.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 SUPERFAMILY SSF51735 1 240 4.05E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 5.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 5.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 5.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7163 684e7c593c572b64179f827c928e11ed 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 5.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 34 291 4.9E-43 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 PANTHER PTHR11731:SF151 3 180 2.9E-28 T 19-04-2016 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 PANTHER PTHR11731 228 290 2.9E-28 T 19-04-2016 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 SMART SM00939 302 529 5.6E-55 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 30 532 1.2E-86 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 PANTHER PTHR11731:SF151 228 290 2.9E-28 T 19-04-2016 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:2.60.120.260 334 535 2.3E-66 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 SUPERFAMILY SSF53474 192 336 6.85E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 SUPERFAMILY SSF53474 17 157 6.85E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 PANTHER PTHR11731 3 180 2.9E-28 T 19-04-2016 AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 SUPERFAMILY SSF49785 330 533 4.46E-57 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:3.40.50.1820 13 157 1.8E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:3.40.50.1820 233 333 1.8E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 Gene3D G3DSA:3.40.50.1820 197 198 1.8E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7210 0af77eb8d506d6f8647d4e70b84542c7 542 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 319 528 1.5E-37 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 4.0E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 4.0E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 4.0E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 4.0E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 128 139 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Hamap MF_00123 Arginine--tRNA ligase [argS]. 10 574 24.76 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 SMART SM00836 460 574 3.2E-36 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Gene3D G3DSA:3.30.1360.70 9 110 1.7E-20 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 29 574 3.2E-141 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 SUPERFAMILY SSF52374 116 452 3.44E-86 T 19-04-2016 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 PANTHER PTHR11956 4 574 2.7E-216 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 PANTHER PTHR11956:SF5 4 574 2.7E-216 T 19-04-2016 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Gene3D G3DSA:3.40.50.620 114 451 4.1E-103 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Pfam PF05746 DALR anticodon binding domain 460 574 1.5E-29 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Gene3D G3DSA:1.10.730.10 454 574 4.3E-33 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Pfam PF00750 tRNA synthetases class I (R) 110 446 1.1E-101 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 SUPERFAMILY SSF47323 454 574 1.05E-31 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 SUPERFAMILY SSF55190 14 100 4.45E-14 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 21 92 2.0E-14 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6698 d99041ca082815a2f64213a1adc8a761 574 SMART SM01016 9 92 4.1E-18 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_6515 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 SUPERFAMILY SSF53474 80 354 3.38E-68 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6515 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 PANTHER PTHR23024:SF24 87 354 5.0E-78 T 19-04-2016 AMED_6515 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 123 138 - T 19-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 AMED_6515 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 Gene3D G3DSA:3.40.50.1820 64 354 7.1E-86 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6515 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 PANTHER PTHR23024 87 354 5.0E-78 T 19-04-2016 AMED_6515 f7e4cd2cb37ef5bc26f8f0c8dd9d184d 355 Pfam PF07859 alpha/beta hydrolase fold 123 330 2.3E-70 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_6272 5af7e4736e88c6eac9c39f30b9951feb 241 Gene3D G3DSA:3.40.50.150 30 193 2.8E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6272 5af7e4736e88c6eac9c39f30b9951feb 241 SUPERFAMILY SSF53335 26 201 3.95E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6272 5af7e4736e88c6eac9c39f30b9951feb 241 PANTHER PTHR10108 34 192 2.0E-21 T 19-04-2016 AMED_6272 5af7e4736e88c6eac9c39f30b9951feb 241 Pfam PF13489 Methyltransferase domain 14 193 7.9E-21 T 19-04-2016 AMED_8842 90af1d5ce2bb58a7b169d97fadf3ddfe 88 Gene3D G3DSA:3.40.30.10 5 81 3.6E-15 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_8842 90af1d5ce2bb58a7b169d97fadf3ddfe 88 PANTHER PTHR34386:SF1 2 85 4.2E-18 T 19-04-2016 AMED_8842 90af1d5ce2bb58a7b169d97fadf3ddfe 88 PANTHER PTHR34386 2 85 4.2E-18 T 19-04-2016 AMED_8842 90af1d5ce2bb58a7b169d97fadf3ddfe 88 Pfam PF00462 Glutaredoxin 6 63 1.6E-11 T 19-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMED_8842 90af1d5ce2bb58a7b169d97fadf3ddfe 88 SUPERFAMILY SSF52833 6 69 7.23E-12 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 Pfam PF01595 Domain of unknown function DUF21 12 205 2.8E-31 T 19-04-2016 IPR002550 Domain of unknown function DUF21 AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 Gene3D G3DSA:3.30.465.10 350 435 3.8E-26 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 Gene3D G3DSA:3.10.580.10 211 349 3.1E-21 T 19-04-2016 AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 Pfam PF03471 Transporter associated domain 359 435 5.6E-23 T 19-04-2016 IPR005170 Transporter-associated domain AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 SMART SM01091 358 436 3.6E-24 T 19-04-2016 IPR005170 Transporter-associated domain AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 PANTHER PTHR22777:SF5 1 435 9.4E-187 T 19-04-2016 AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 SUPERFAMILY SSF56176 358 442 7.09E-22 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 Pfam PF00571 CBS domain 289 341 8.4E-6 T 19-04-2016 IPR000644 CBS domain AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 SUPERFAMILY SSF54631 212 352 1.24E-29 T 19-04-2016 AMED_4973 10c81a7c059b2163db2fbb1c5fb24d03 445 PANTHER PTHR22777 1 435 9.4E-187 T 19-04-2016 AMED_4442 34a44140fd2690662c14e811f966031a 706 SMART SM01043 97 243 1.3E-40 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4442 34a44140fd2690662c14e811f966031a 706 SUPERFAMILY SSF46894 6 90 1.13E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4442 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.10.10.10 13 78 2.1E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4442 34a44140fd2690662c14e811f966031a 706 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 90 1.3E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4442 34a44140fd2690662c14e811f966031a 706 PANTHER PTHR35807 1 249 8.0E-49 T 19-04-2016 AMED_4442 34a44140fd2690662c14e811f966031a 706 SUPERFAMILY SSF48452 94 258 2.89E-31 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4442 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.25.40.10 622 649 1.4E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4442 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.25.40.10 378 379 1.4E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4442 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.25.40.10 189 222 1.4E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4442 34a44140fd2690662c14e811f966031a 706 Gene3D G3DSA:1.25.40.10 109 131 1.4E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4442 34a44140fd2690662c14e811f966031a 706 Pfam PF03704 Bacterial transcriptional activator domain 97 243 9.2E-34 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4442 34a44140fd2690662c14e811f966031a 706 SMART SM00862 18 90 3.7E-11 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 Pfam PF12802 MarR family 32 84 1.0E-9 T 19-04-2016 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 Gene3D G3DSA:1.10.10.10 4 139 1.5E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 SMART SM00347 26 126 4.1E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 6.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 6.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 6.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 6.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 PANTHER PTHR33164 1 140 7.3E-14 T 19-04-2016 AMED_1455 f5a777a0d671f105001a7a27a6f855db 140 SUPERFAMILY SSF46785 6 138 9.86E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7651 e8425031fc54f3a9d914fb17102feff2 205 Gene3D G3DSA:1.10.357.10 1 194 2.8E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7651 e8425031fc54f3a9d914fb17102feff2 205 PANTHER PTHR30055 2 192 9.0E-15 T 19-04-2016 AMED_7651 e8425031fc54f3a9d914fb17102feff2 205 Pfam PF13977 Bacterial transcriptional repressor 86 192 5.1E-15 T 19-04-2016 AMED_7651 e8425031fc54f3a9d914fb17102feff2 205 SUPERFAMILY SSF48498 84 193 2.59E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7651 e8425031fc54f3a9d914fb17102feff2 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 8.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7651 e8425031fc54f3a9d914fb17102feff2 205 SUPERFAMILY SSF46689 2 82 1.13E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 497 1.9E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF13193 AMP-binding enzyme C-terminal domain 1472 1546 5.4E-13 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 791 1040 8.89E-53 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:1.10.1200.10 524 586 3.2E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:1.10.1200.10 1562 1636 1.3E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00668 Condensation domain 1657 1930 2.8E-38 T 19-04-2016 IPR001242 Condensation domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00668 Condensation domain 2076 2352 2.7E-47 T 19-04-2016 IPR001242 Condensation domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00668 Condensation domain 617 905 5.5E-55 T 19-04-2016 IPR001242 Condensation domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF56801 1029 1587 2.49E-140 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.300.30 1458 1557 4.9E-34 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 2239 2472 2.67E-43 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.40.50.980 1212 1374 1.4E-32 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00550 Phosphopantetheine attachment site 1577 1635 4.9E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00550 Phosphopantetheine attachment site 524 582 4.7E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.30.300.30 408 523 2.3E-35 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 1832 2042 3.67E-26 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF47336 516 582 4.06E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1598 1613 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.40.50.980 180 325 5.2E-47 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00012 Phosphopantetheine attachment site. 544 559 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1090 1488 2.2E-122 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 41 437 8.4E-134 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1205 1216 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SMART SM00823 Phosphopantetheine attachment site 1574 1642 4.5E-5 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SMART SM00823 Phosphopantetheine attachment site 519 588 7.6E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 PANTHER PTHR24095:SF173 189 1629 0.0 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 PANTHER PTHR24095:SF173 2050 2399 0.0 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 PANTHER PTHR24095 189 1629 0.0 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 PANTHER PTHR24095 2050 2399 0.0 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF47336 1566 1635 4.58E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 PANTHER PTHR24095:SF173 2021 2034 0.0 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.40.50.980 14 179 1.3E-48 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 PANTHER PTHR24095 2021 2034 0.0 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:2.30.38.10 326 403 3.7E-24 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:2.30.38.10 1375 1453 1.1E-22 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 614 806 1.11E-43 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00501 AMP-binding enzyme 1070 1464 6.4E-80 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Pfam PF00501 AMP-binding enzyme 21 412 2.5E-97 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 2081 2237 4.08E-38 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF52777 1659 1819 6.56E-32 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 Gene3D G3DSA:3.40.50.980 1064 1211 7.4E-45 T 19-04-2016 AMED_4804 352b37b17c1d5839ce15d176dc1420df 2473 SUPERFAMILY SSF56801 14 533 1.83E-152 T 19-04-2016 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PANTHER PTHR11946 354 830 1.1E-159 T 19-04-2016 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PANTHER PTHR11946 20 101 1.1E-159 T 19-04-2016 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PANTHER PTHR11946 119 338 1.1E-159 T 19-04-2016 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF52374 10 218 5.42E-104 T 19-04-2016 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF52374 375 617 5.42E-104 T 19-04-2016 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:3.90.740.10 223 366 2.4E-26 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PANTHER PTHR11946:SF5 354 830 1.1E-159 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PANTHER PTHR11946:SF5 20 101 1.1E-159 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PANTHER PTHR11946:SF5 119 338 1.1E-159 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF47323 629 832 5.79E-37 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 23 615 2.1E-89 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:3.40.50.620 378 610 6.7E-97 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:3.40.50.620 12 214 6.7E-97 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 52 63 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 498 519 1.3E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 45 56 1.3E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 529 547 1.3E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 380 393 1.3E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 PRINTS PR00986 Valyl-tRNA synthetase signature 255 272 1.3E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 SUPERFAMILY SSF50677 217 366 1.96E-32 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Pfam PF08264 Anticodon-binding domain of tRNA 654 794 7.5E-26 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Hamap MF_02005 Valine--tRNA ligase [valS]. 10 826 27.124 T 19-04-2016 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 AMED_2386 d09a8846a6c9fbdaa9f1fcaefb4f9d20 837 Gene3D G3DSA:1.10.730.10 616 781 1.5E-35 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 1.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 1.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 1.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 PANTHER PTHR26402 5 217 2.5E-93 T 19-04-2016 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 PANTHER PTHR26402:SF564 5 217 2.5E-93 T 19-04-2016 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 3.2E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 SUPERFAMILY SSF46894 149 217 4.08E-24 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 SUPERFAMILY SSF52172 4 138 5.98E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 SMART SM00448 5 120 4.0E-32 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 Gene3D G3DSA:3.40.50.2300 3 159 8.1E-38 T 19-04-2016 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 Pfam PF00072 Response regulator receiver domain 7 119 5.2E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 SMART SM00421 155 212 5.7E-28 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1088 8bcfe2f273a2c106ca1ea318d42ef11c 219 Gene3D G3DSA:1.10.10.10 160 217 5.6E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 SMART SM00861 336 510 3.8E-54 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 Gene3D G3DSA:3.40.50.970 338 524 1.4E-73 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 SUPERFAMILY SSF52518 336 534 2.36E-63 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 SUPERFAMILY SSF52518 15 345 3.93E-91 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 Pfam PF00676 Dehydrogenase E1 component 21 311 4.5E-76 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 PANTHER PTHR11624 322 652 6.6E-147 T 19-04-2016 IPR033247 Transketolase family AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 PANTHER PTHR11624 8 269 6.6E-147 T 19-04-2016 IPR033247 Transketolase family AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 Gene3D G3DSA:3.40.50.970 10 318 6.3E-118 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 PANTHER PTHR11624:SF77 322 652 6.6E-147 T 19-04-2016 AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 PANTHER PTHR11624:SF77 8 269 6.6E-147 T 19-04-2016 AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 Pfam PF02780 Transketolase, C-terminal domain 524 646 6.0E-37 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 Gene3D G3DSA:3.40.50.920 525 652 5.9E-44 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 SUPERFAMILY SSF52922 519 652 1.44E-38 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_7122 9f74c222d49b66aed08d0ce886024d28 656 Pfam PF02779 Transketolase, pyrimidine binding domain 338 509 1.6E-45 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 PANTHER PTHR26402 2 189 4.6E-58 T 19-04-2016 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 188 7.9E-21 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 PANTHER PTHR26402:SF151 2 189 4.6E-58 T 19-04-2016 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 Gene3D G3DSA:3.40.50.2300 1 139 5.9E-30 T 19-04-2016 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 SUPERFAMILY SSF52172 1 125 9.53E-27 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 Gene3D G3DSA:1.10.10.10 140 191 4.8E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 165 9.2E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 177 9.2E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 135 149 9.2E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 Pfam PF00072 Response regulator receiver domain 4 111 9.7E-20 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 SMART SM00421 132 189 2.5E-26 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 SUPERFAMILY SSF46894 128 191 4.08E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 ProSitePatterns PS00622 LuxR-type HTH domain signature. 149 176 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5982 deaa4b7112aeb88b8113d2e1e9a31a35 192 SMART SM00448 2 111 1.3E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 PANTHER PTHR13794 13 355 1.7E-101 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 SUPERFAMILY SSF51604 93 355 2.1E-72 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 Gene3D G3DSA:3.30.390.10 6 114 3.5E-39 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 Pfam PF13378 Enolase C-terminal domain-like 130 354 8.3E-58 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 105 4.5E-20 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 SUPERFAMILY SSF54826 2 110 2.0E-28 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 80 105 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 PANTHER PTHR13794:SF4 13 355 1.7E-101 T 19-04-2016 AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 Gene3D G3DSA:3.20.20.120 115 342 8.6E-79 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_7238 d9a9b891c8474c56ecc05341802ca6e8 379 SMART SM00922 123 234 1.0E-18 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_4376 306d2de6d122ea7e1f691871e893f626 208 SUPERFAMILY SSF88659 127 202 3.36E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 SUPERFAMILY SSF88946 23 122 2.9E-16 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 Gene3D G3DSA:1.10.1740.10 22 136 9.0E-19 T 19-04-2016 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 PANTHER PTHR30173 11 202 2.8E-50 T 19-04-2016 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 Gene3D G3DSA:1.10.10.10 148 202 3.8E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4376 306d2de6d122ea7e1f691871e893f626 208 Pfam PF04545 Sigma-70, region 4 148 197 7.6E-10 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 PANTHER PTHR30173:SF3 11 202 2.8E-50 T 19-04-2016 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 39 199 2.6E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4376 306d2de6d122ea7e1f691871e893f626 208 Pfam PF04542 Sigma-70 region 2 42 112 3.7E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4810 efdf27c6f229abd6efde76032f5cdb2b 232 Gene3D G3DSA:1.25.10.10 12 196 4.1E-17 T 19-04-2016 IPR011989 Armadillo-like helical AMED_4810 efdf27c6f229abd6efde76032f5cdb2b 232 Pfam PF13646 HEAT repeats 59 131 7.3E-8 T 19-04-2016 AMED_4810 efdf27c6f229abd6efde76032f5cdb2b 232 SUPERFAMILY SSF48371 13 196 7.97E-16 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 SUPERFAMILY SSF53062 2 122 8.76E-32 T 19-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PRINTS PR00107 Phosphocarrier protein signature 189 206 7.2E-12 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PRINTS PR00107 Phosphocarrier protein signature 149 165 7.2E-12 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PRINTS PR00107 Phosphocarrier protein signature 174 189 7.2E-12 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 3 120 1.6E-36 T 19-04-2016 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Gene3D G3DSA:3.40.50.510 2 122 4.1E-42 T 19-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 140 217 7.5E-24 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 SUPERFAMILY SSF55594 139 223 1.44E-23 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Pfam PF00381 PTS HPr component phosphorylation site 139 217 5.7E-24 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Pfam PF03610 PTS system fructose IIA component 4 115 2.0E-24 T 19-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PANTHER PTHR38594:SF1 1 130 5.5E-35 T 19-04-2016 AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 PANTHER PTHR38594 1 130 5.5E-35 T 19-04-2016 AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 149 156 - T 19-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMED_7746 881d1c0fae8d518f2f31dc20ecd2b4e0 223 Gene3D G3DSA:3.30.1340.10 139 223 1.3E-27 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4869 79a4c8a1c839c2c2cce1f7d8b9a9528c 344 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 36 309 8.7E-19 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4869 79a4c8a1c839c2c2cce1f7d8b9a9528c 344 Gene3D G3DSA:3.40.50.1110 30 318 4.7E-38 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4869 79a4c8a1c839c2c2cce1f7d8b9a9528c 344 SUPERFAMILY SSF52266 31 318 3.33E-41 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 33 108 1.8E-10 T 19-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 SUPERFAMILY SSF49503 11 108 6.2E-26 T 19-04-2016 IPR008972 Cupredoxin AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 PANTHER PTHR36507:SF1 1 110 2.6E-23 T 19-04-2016 AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 Gene3D G3DSA:2.60.40.420 13 108 1.5E-27 T 19-04-2016 IPR008972 Cupredoxin AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 PRINTS PR00155 Amicyanin family signature 77 92 3.5E-8 T 19-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 PRINTS PR00155 Amicyanin family signature 37 56 3.5E-8 T 19-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 PRINTS PR00155 Amicyanin family signature 93 108 3.5E-8 T 19-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMED_4248 7d2d730e660b314942695b4c7ee7ccae 213 PANTHER PTHR36507 1 110 2.6E-23 T 19-04-2016 AMED_1750 dbfcc9d703ebcdedb55a39f6dc5497fb 265 Pfam PF12697 Alpha/beta hydrolase family 23 244 1.5E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1750 dbfcc9d703ebcdedb55a39f6dc5497fb 265 SUPERFAMILY SSF53474 3 257 9.45E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1750 dbfcc9d703ebcdedb55a39f6dc5497fb 265 PANTHER PTHR10992:SF771 3 257 1.1E-23 T 19-04-2016 AMED_1750 dbfcc9d703ebcdedb55a39f6dc5497fb 265 Gene3D G3DSA:3.40.50.1820 3 257 7.5E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1750 dbfcc9d703ebcdedb55a39f6dc5497fb 265 PANTHER PTHR10992 3 257 1.1E-23 T 19-04-2016 AMED_7384 8ab8d6318bf1d920cc1d5ec1ceca341a 241 SMART SM00382 30 205 5.8E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7384 8ab8d6318bf1d920cc1d5ec1ceca341a 241 SUPERFAMILY SSF52540 4 220 3.38E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7384 8ab8d6318bf1d920cc1d5ec1ceca341a 241 Gene3D G3DSA:3.40.50.300 3 223 1.6E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7384 8ab8d6318bf1d920cc1d5ec1ceca341a 241 PANTHER PTHR24220:SF445 7 233 1.1E-99 T 19-04-2016 AMED_7384 8ab8d6318bf1d920cc1d5ec1ceca341a 241 Pfam PF00005 ABC transporter 23 158 1.0E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7384 8ab8d6318bf1d920cc1d5ec1ceca341a 241 PANTHER PTHR24220 7 233 1.1E-99 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PANTHER PTHR13789:SF210 3 423 1.7E-77 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PANTHER PTHR13789 3 423 1.7E-77 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 Gene3D G3DSA:3.50.50.60 2 166 1.4E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 Gene3D G3DSA:3.50.50.60 278 316 1.4E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 Pfam PF01494 FAD binding domain 1 344 3.4E-66 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 Gene3D G3DSA:3.30.9.10 167 273 1.1E-10 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 Gene3D G3DSA:3.30.9.10 328 347 1.1E-10 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 SUPERFAMILY SSF51905 2 176 5.36E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 SUPERFAMILY SSF51905 267 379 5.36E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 313 331 1.2E-38 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 1.2E-38 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 331 347 1.2E-38 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 1.2E-38 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 1.2E-38 T 19-04-2016 AMED_5351 9dea65e187c324ee70e2d679720929c3 503 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.2E-38 T 19-04-2016 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 Gene3D G3DSA:3.10.580.10 184 326 1.9E-21 T 19-04-2016 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 SMART SM01091 335 417 1.5E-18 T 19-04-2016 IPR005170 Transporter-associated domain AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 SUPERFAMILY SSF54631 185 322 1.26E-32 T 19-04-2016 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 PANTHER PTHR22777 3 420 9.7E-166 T 19-04-2016 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 PANTHER PTHR22777:SF17 3 420 9.7E-166 T 19-04-2016 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 Gene3D G3DSA:3.30.465.10 327 415 2.4E-24 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF03471 Transporter associated domain 336 412 3.4E-12 T 19-04-2016 IPR005170 Transporter-associated domain AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 SUPERFAMILY SSF56176 330 413 2.73E-14 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF01595 Domain of unknown function DUF21 6 183 5.4E-34 T 19-04-2016 IPR002550 Domain of unknown function DUF21 AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF00571 CBS domain 200 252 1.8E-5 T 19-04-2016 IPR000644 CBS domain AMED_6623 31aa719eb3c1fdec884c139848e46ac2 447 Pfam PF00571 CBS domain 266 319 5.3E-5 T 19-04-2016 IPR000644 CBS domain AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 SUPERFAMILY SSF47203 243 382 3.7E-16 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 SUPERFAMILY SSF56645 5 237 6.54E-39 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 Gene3D G3DSA:1.20.140.10 228 381 5.5E-19 T 19-04-2016 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 PANTHER PTHR10909:SF305 50 377 5.9E-38 T 19-04-2016 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 PANTHER PTHR10909 50 377 5.9E-38 T 19-04-2016 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 Gene3D G3DSA:2.40.110.10 132 227 8.8E-24 T 19-04-2016 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 379 2.1E-12 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 226 1.2E-18 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 Gene3D G3DSA:1.10.540.10 13 124 5.0E-7 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_4032 0bc7e643e05ed1da873bda59b72e0ec7 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 50 122 4.2E-5 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7671 00385f5e3074e5272c3053b6ba84cb56 366 Pfam PF00149 Calcineurin-like phosphoesterase 140 308 5.8E-9 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_7671 00385f5e3074e5272c3053b6ba84cb56 366 PANTHER PTHR31302 94 366 6.0E-69 T 19-04-2016 AMED_7671 00385f5e3074e5272c3053b6ba84cb56 366 PANTHER PTHR31302:SF7 94 366 6.0E-69 T 19-04-2016 AMED_7671 00385f5e3074e5272c3053b6ba84cb56 366 SUPERFAMILY SSF56300 140 364 1.24E-35 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_7671 00385f5e3074e5272c3053b6ba84cb56 366 Gene3D G3DSA:3.60.21.10 140 318 8.1E-25 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1712 6bd4794b9dfde04715de41779aac9674 225 Gene3D G3DSA:4.10.520.10 3 90 9.7E-27 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 SMART SM00411 2 90 1.8E-31 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.2E-13 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.2E-13 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.2E-13 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 19-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 PANTHER PTHR33175 2 97 1.3E-35 T 19-04-2016 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 Pfam PF00216 Bacterial DNA-binding protein 3 89 4.2E-24 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 SUPERFAMILY SSF47729 3 93 6.18E-24 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMED_1712 6bd4794b9dfde04715de41779aac9674 225 PANTHER PTHR33175:SF3 2 97 1.3E-35 T 19-04-2016 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 21 726 1.7E-263 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF50249 654 724 2.69E-14 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF54211 13 155 3.8E-45 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Pfam PF03725 3' exoribonuclease family, domain 2 490 564 9.7E-7 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:3.30.1370.10 586 658 1.2E-21 T 19-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF54211 326 522 7.09E-45 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SMART SM00316 656 727 7.8E-17 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 TIGRFAM TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase 9 725 0.0 T 19-04-2016 IPR014069 Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase GO:0004654|GO:0005737|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Pfam PF01138 3' exoribonuclease family, domain 1 24 155 3.2E-18 T 19-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Pfam PF01138 3' exoribonuclease family, domain 1 355 487 7.5E-17 T 19-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF55666 481 580 4.25E-24 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 PIRSF PIRSF005499 11 753 6.2E-285 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Pfam PF00575 S1 RNA binding domain 655 724 1.1E-12 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:1.10.10.400 267 342 2.7E-25 T 19-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF55666 156 263 6.25E-24 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 13 730 26.885 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Pfam PF00013 KH domain 590 647 2.2E-10 T 19-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SMART SM00322 586 651 1.0E-10 T 19-04-2016 IPR004087 K Homology domain GO:0003676 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:2.40.50.140 659 724 8.7E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 270 350 5.9E-20 T 19-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF46915 267 352 5.75E-17 T 19-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 SUPERFAMILY SSF54791 589 675 1.38E-17 T 19-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:3.30.230.70 343 577 2.0E-82 T 19-04-2016 IPR027408 PNPase/RNase PH domain AMED_6318 f377a4eace05cce9402ece93b72168bb 753 Gene3D G3DSA:3.30.230.70 12 251 9.6E-80 T 19-04-2016 IPR027408 PNPase/RNase PH domain AMED_6318 f377a4eace05cce9402ece93b72168bb 753 PANTHER PTHR11252:SF0 21 724 0.0 T 19-04-2016 AMED_6318 f377a4eace05cce9402ece93b72168bb 753 PANTHER PTHR11252 21 724 0.0 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMED_5051 324c898508a1236662707d81942df6e6 107 PANTHER PTHR33215 4 105 9.1E-20 T 19-04-2016 AMED_5051 324c898508a1236662707d81942df6e6 107 SUPERFAMILY SSF46689 5 97 3.4E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5051 324c898508a1236662707d81942df6e6 107 Gene3D G3DSA:1.10.10.60 10 95 2.9E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5051 324c898508a1236662707d81942df6e6 107 Pfam PF01527 Transposase 4 79 1.3E-13 T 19-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 PANTHER PTHR10992 4 250 1.8E-15 T 19-04-2016 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 Pfam PF12697 Alpha/beta hydrolase family 5 242 1.6E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 PANTHER PTHR10992:SF877 4 250 1.8E-15 T 19-04-2016 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 Gene3D G3DSA:3.40.50.1820 4 249 1.9E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 SUPERFAMILY SSF53474 4 250 1.03E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 PRINTS PR00412 Epoxide hydrolase signature 9 27 2.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 PRINTS PR00412 Epoxide hydrolase signature 84 97 2.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 PRINTS PR00412 Epoxide hydrolase signature 225 247 2.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7632 168cca7138b4fb1e3be61dc4469a662b 253 PRINTS PR00412 Epoxide hydrolase signature 70 83 2.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 PANTHER PTHR11070:SF21 9 571 2.3E-281 T 19-04-2016 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF13361 UvrD-like helicase C-terminal domain 481 550 1.4E-21 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF13361 UvrD-like helicase C-terminal domain 287 410 1.3E-15 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 SMART SM00341 618 694 1.1E-9 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF00580 UvrD/REP helicase N-terminal domain 17 280 3.8E-47 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:3.40.50.300 16 285 9.7E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 PANTHER PTHR11070 9 571 2.3E-281 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:3.40.50.300 487 572 2.1E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:3.40.50.300 290 404 2.1E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Gene3D G3DSA:1.10.150.80 621 686 1.7E-13 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 Pfam PF00570 HRDC domain 622 688 1.1E-20 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 SUPERFAMILY SSF52540 10 572 2.54E-129 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1233 6f4a0687e2673d7fb0e1193ec8c48509 694 SUPERFAMILY SSF47819 612 691 1.88E-21 T 19-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 Gene3D G3DSA:1.10.10.10 176 216 2.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 9.4E-7 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 9.4E-7 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 9.4E-7 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 PANTHER PTHR30154:SF12 172 315 2.7E-27 T 19-04-2016 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 9.7E-16 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 Pfam PF13404 AsnC-type helix-turn-helix domain 176 212 2.5E-9 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 Pfam PF01037 Lrp/AsnC ligand binding domain 243 308 1.1E-10 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 SUPERFAMILY SSF54909 233 310 1.74E-10 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 SMART SM00344 4 108 5.2E-5 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 SMART SM00344 176 277 2.4E-5 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 SUPERFAMILY SSF46785 176 218 5.77E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 PANTHER PTHR30154 172 315 2.7E-27 T 19-04-2016 AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 Gene3D G3DSA:1.10.10.10 2 47 5.6E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 Gene3D G3DSA:3.30.70.920 235 310 2.4E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8129 da313a2a276ed9423af791ecb006dbfb 315 SUPERFAMILY SSF46785 3 48 3.5E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 8 23 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 8 263 3.7E-80 T 19-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 PANTHER PTHR20941:SF8 4 269 5.4E-136 T 19-04-2016 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 PANTHER PTHR20941 4 269 5.4E-136 T 19-04-2016 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 SUPERFAMILY SSF51717 4 266 1.96E-76 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 42 55 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 Pfam PF00809 Pterin binding enzyme 9 249 8.5E-64 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_7207 00a055f41e5d7453c587032c8e86f5b4 278 Gene3D G3DSA:3.20.20.20 3 266 1.0E-81 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 9.3E-33 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 Gene3D G3DSA:3.90.180.10 1 163 4.2E-59 T 19-04-2016 IPR011032 GroES-like AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 SUPERFAMILY SSF50129 1 171 8.07E-56 T 19-04-2016 IPR011032 GroES-like AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 Gene3D G3DSA:3.40.50.720 164 277 1.1E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 PANTHER PTHR11695:SF429 12 329 2.5E-107 T 19-04-2016 AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 PANTHER PTHR11695 12 329 2.5E-107 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 SMART SM00829 7 327 6.3E-7 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 SUPERFAMILY SSF51735 136 320 8.4E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0870 40d219e354cd2b11916fcc8409c59e84 334 Pfam PF00107 Zinc-binding dehydrogenase 173 291 1.2E-15 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 PIRSF PIRSF000429 1 392 8.5E-126 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 PANTHER PTHR18919:SF91 1 391 5.7E-197 T 19-04-2016 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 19-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 PANTHER PTHR18919 1 391 5.7E-197 T 19-04-2016 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 Pfam PF00108 Thiolase, N-terminal domain 4 260 4.0E-69 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 8.8E-134 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 Gene3D G3DSA:3.40.47.10 276 391 9.4E-54 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 Gene3D G3DSA:3.40.47.10 159 198 9.4E-54 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 SUPERFAMILY SSF53901 3 267 2.54E-76 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 Gene3D G3DSA:3.40.47.10 199 275 7.4E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 Gene3D G3DSA:3.40.47.10 3 124 7.4E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 SUPERFAMILY SSF53901 271 391 3.2E-39 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1859 72cf506e2cfeae87df0535655a20ceab 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 3.8E-40 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_6675 556d7445595eae8e8522ca930e7863af 586 SUPERFAMILY SSF51445 175 519 8.69E-107 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 454 470 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 169 186 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 305 323 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 340 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 257 274 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 472 489 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 127 147 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PRINTS PR00738 Glycosyl hydrolase family 20 signature 198 219 1.7E-45 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 Gene3D G3DSA:2.10.10.20 535 582 5.8E-20 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PANTHER PTHR22600:SF21 24 525 2.5E-150 T 19-04-2016 AMED_6675 556d7445595eae8e8522ca930e7863af 586 Pfam PF02839 Carbohydrate binding domain 539 580 2.4E-11 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_6675 556d7445595eae8e8522ca930e7863af 586 SMART SM00495 538 583 5.0E-17 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_6675 556d7445595eae8e8522ca930e7863af 586 SUPERFAMILY SSF51055 534 586 3.73E-15 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_6675 556d7445595eae8e8522ca930e7863af 586 PANTHER PTHR22600 24 525 2.5E-150 T 19-04-2016 AMED_6675 556d7445595eae8e8522ca930e7863af 586 SUPERFAMILY SSF55545 29 174 1.02E-25 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_6675 556d7445595eae8e8522ca930e7863af 586 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 36 171 2.5E-21 T 19-04-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 Gene3D G3DSA:3.20.20.80 173 520 2.2E-104 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6675 556d7445595eae8e8522ca930e7863af 586 Gene3D G3DSA:3.30.379.10 21 171 8.1E-31 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_6675 556d7445595eae8e8522ca930e7863af 586 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 349 490 6.3E-22 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6675 556d7445595eae8e8522ca930e7863af 586 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 175 341 8.7E-60 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 Pfam PF01738 Dienelactone hydrolase family 149 256 5.6E-5 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 Gene3D G3DSA:3.40.50.1820 55 285 5.8E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 SUPERFAMILY SSF50370 317 446 1.02E-32 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 Pfam PF00652 Ricin-type beta-trefoil lectin domain 319 444 3.3E-26 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 SMART SM00458 319 447 1.7E-22 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 SUPERFAMILY SSF53474 71 291 3.22E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 PANTHER PTHR10272 81 259 6.6E-12 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_3924 3f8bf9d979c368383c9b5580ba83372d 447 Gene3D G3DSA:2.80.10.50 323 446 5.2E-34 T 19-04-2016 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF10435 Beta-galactosidase, domain 2 398 562 1.3E-25 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF01301 Glycosyl hydrolases family 35 40 383 4.6E-89 T 19-04-2016 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF49785 805 950 2.19E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF51445 32 383 1.34E-91 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF51011 401 544 5.68E-28 T 19-04-2016 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.60.120.260 649 810 3.2E-46 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 SMART SM01029 389 562 2.3E-52 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.60.120.260 811 961 2.1E-44 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PANTHER PTHR23421:SF64 248 483 1.9E-118 T 19-04-2016 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PANTHER PTHR23421:SF64 4 227 1.9E-118 T 19-04-2016 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF13364 Beta-galactosidase jelly roll domain 655 772 2.3E-22 T 19-04-2016 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Pfam PF13364 Beta-galactosidase jelly roll domain 818 929 5.5E-28 T 19-04-2016 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF49785 634 798 1.17E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.102.20.10 397 556 2.9E-42 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 354 370 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 121 140 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 44 61 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 690 704 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 718 734 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 176 191 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 335 350 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PRINTS PR00742 Glycosyl hydrolase family 35 signature 66 84 3.6E-28 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:3.20.20.80 31 388 4.2E-103 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 Gene3D G3DSA:2.60.390.10 557 624 8.7E-7 T 19-04-2016 IPR025972 Beta-galactosidase, domain 3 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 SUPERFAMILY SSF117100 562 628 4.58E-9 T 19-04-2016 IPR025972 Beta-galactosidase, domain 3 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PANTHER PTHR23421 248 483 1.9E-118 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4440 0f47ff281e214b1c3270d3a42f75f371 962 PANTHER PTHR23421 4 227 1.9E-118 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 PANTHER PTHR24220:SF0 291 301 1.3E-92 T 19-04-2016 AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 PANTHER PTHR24220:SF0 7 226 1.3E-92 T 19-04-2016 AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 SUPERFAMILY SSF52540 3 226 1.78E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 SMART SM00382 30 211 1.5E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 Gene3D G3DSA:3.40.50.300 3 224 1.6E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 Pfam PF00005 ABC transporter 21 162 1.6E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 13 303 1.7E-96 T 19-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 PANTHER PTHR24220 291 301 1.3E-92 T 19-04-2016 AMED_0025 02e0e0d0ca9220bc2206c3c3591f95d5 311 PANTHER PTHR24220 7 226 1.3E-92 T 19-04-2016 AMED_1029 391b66be03a181fc108482e086d062dc 468 Pfam PF01494 FAD binding domain 2 336 9.2E-77 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1029 391b66be03a181fc108482e086d062dc 468 Gene3D G3DSA:3.50.50.60 266 341 4.4E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1029 391b66be03a181fc108482e086d062dc 468 Gene3D G3DSA:3.50.50.60 1 178 4.4E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1029 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 1.4E-33 T 19-04-2016 AMED_1029 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.4E-33 T 19-04-2016 AMED_1029 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-33 T 19-04-2016 AMED_1029 391b66be03a181fc108482e086d062dc 468 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.4E-33 T 19-04-2016 AMED_1029 391b66be03a181fc108482e086d062dc 468 SUPERFAMILY SSF51905 265 346 4.77E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1029 391b66be03a181fc108482e086d062dc 468 SUPERFAMILY SSF51905 2 173 4.77E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1029 391b66be03a181fc108482e086d062dc 468 PANTHER PTHR13789:SF90 1 336 5.0E-90 T 19-04-2016 AMED_1029 391b66be03a181fc108482e086d062dc 468 PANTHER PTHR13789 1 336 5.0E-90 T 19-04-2016 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 Pfam PF04542 Sigma-70 region 2 15 82 6.7E-15 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 Gene3D G3DSA:1.10.1740.10 3 97 1.8E-20 T 19-04-2016 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 Gene3D G3DSA:1.10.10.10 110 172 5.5E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 171 2.8E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 SUPERFAMILY SSF88946 2 87 8.24E-20 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 PANTHER PTHR30173:SF16 1 171 1.2E-68 T 19-04-2016 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 SUPERFAMILY SSF88659 108 171 4.8E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 Pfam PF08281 Sigma-70, region 4 115 167 1.6E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2953 9c14328f02cef891127308e6f50bf8b5 175 PANTHER PTHR30173 1 171 1.2E-68 T 19-04-2016 AMED_5770 173043a38b69d4e8e26d27818ed802e5 273 SUPERFAMILY SSF161098 5 268 5.49E-65 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5770 173043a38b69d4e8e26d27818ed802e5 273 Gene3D G3DSA:1.10.3720.10 5 261 1.6E-56 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5770 173043a38b69d4e8e26d27818ed802e5 273 PANTHER PTHR32243 1 273 4.0E-79 T 19-04-2016 AMED_5770 173043a38b69d4e8e26d27818ed802e5 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 263 1.1E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0644 b6dec2d91bf007b3ade6b7e042741c9e 356 Pfam PF00296 Luciferase-like monooxygenase 6 322 1.8E-75 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0644 b6dec2d91bf007b3ade6b7e042741c9e 356 Gene3D G3DSA:3.20.20.30 6 356 8.8E-97 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0644 b6dec2d91bf007b3ade6b7e042741c9e 356 PANTHER PTHR30137 1 356 1.3E-61 T 19-04-2016 AMED_0644 b6dec2d91bf007b3ade6b7e042741c9e 356 SUPERFAMILY SSF51679 6 356 7.2E-91 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 Pfam PF12697 Alpha/beta hydrolase family 26 279 5.0E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PANTHER PTHR10992 163 289 2.1E-34 T 19-04-2016 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PANTHER PTHR10992 8 147 2.1E-34 T 19-04-2016 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 Gene3D G3DSA:3.40.50.1820 5 287 9.6E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4627 66bbaa07cd20588285a9322530e69b72 293 SUPERFAMILY SSF53474 7 285 1.24E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 53 68 4.4E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 231 247 4.4E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 264 286 4.4E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 99 112 4.4E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4627 66bbaa07cd20588285a9322530e69b72 293 PRINTS PR00412 Epoxide hydrolase signature 30 48 4.4E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1492 65dd6e1e8ee385b11509d2dc5f734be7 128 Pfam PF01042 Endoribonuclease L-PSP 16 127 9.5E-17 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_1492 65dd6e1e8ee385b11509d2dc5f734be7 128 SUPERFAMILY SSF55298 1 127 1.19E-22 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_1492 65dd6e1e8ee385b11509d2dc5f734be7 128 PANTHER PTHR11803 1 128 5.4E-39 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_1492 65dd6e1e8ee385b11509d2dc5f734be7 128 PANTHER PTHR11803:SF9 1 128 5.4E-39 T 19-04-2016 AMED_1492 65dd6e1e8ee385b11509d2dc5f734be7 128 Gene3D G3DSA:3.30.1330.40 1 128 5.3E-27 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 Gene3D G3DSA:3.40.50.1000 116 240 2.4E-36 T 19-04-2016 IPR023214 HAD-like domain AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 Gene3D G3DSA:3.40.50.1000 5 22 2.4E-36 T 19-04-2016 IPR023214 HAD-like domain AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 SUPERFAMILY SSF56784 8 241 7.83E-40 T 19-04-2016 IPR023214 HAD-like domain AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 8 210 1.7E-48 T 19-04-2016 IPR010976 Beta-phosphoglucomutase hydrolase AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 Gene3D G3DSA:1.10.150.240 23 108 2.0E-5 T 19-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 PANTHER PTHR18901 3 240 8.4E-86 T 19-04-2016 AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 209 1.3E-17 T 19-04-2016 IPR023214 HAD-like domain AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 101 213 1.2E-13 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_2979 295683c62a07c54bdb0bff24adbceadd 243 PANTHER PTHR18901:SF19 3 240 8.4E-86 T 19-04-2016 AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 PANTHER PTHR10992:SF771 8 136 4.2E-36 T 19-04-2016 AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 PANTHER PTHR10992:SF771 152 253 4.2E-36 T 19-04-2016 AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 SUPERFAMILY SSF53474 3 252 3.71E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 Pfam PF00561 alpha/beta hydrolase fold 25 124 4.3E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 Gene3D G3DSA:3.40.50.1820 3 252 1.7E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 PANTHER PTHR10992 8 136 4.2E-36 T 19-04-2016 AMED_0597 193058e646c23fcfcd8e5144c9f085d5 257 PANTHER PTHR10992 152 253 4.2E-36 T 19-04-2016 AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 PANTHER PTHR30136 24 259 1.5E-54 T 19-04-2016 AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 Gene3D G3DSA:3.30.450.40 82 257 2.4E-49 T 19-04-2016 IPR029016 GAF domain-like AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 Pfam PF09339 IclR helix-turn-helix domain 17 67 5.9E-14 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 SUPERFAMILY SSF55781 77 252 3.79E-44 T 19-04-2016 IPR029016 GAF domain-like AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 Pfam PF01614 Bacterial transcriptional regulator 131 250 2.3E-29 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 Gene3D G3DSA:1.10.10.10 18 81 5.1E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 PANTHER PTHR30136:SF2 24 259 1.5E-54 T 19-04-2016 AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 SUPERFAMILY SSF46785 18 83 4.56E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5017 69922bd4a53d0bf5d23b0f6eb8a45937 261 SMART SM00346 18 102 4.8E-16 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 PANTHER PTHR18966 27 241 1.4E-27 T 19-04-2016 AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 Gene3D G3DSA:3.40.190.10 104 202 1.0E-16 T 19-04-2016 AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 Gene3D G3DSA:3.40.190.10 25 103 7.4E-32 T 19-04-2016 AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 Gene3D G3DSA:3.40.190.10 205 245 7.4E-32 T 19-04-2016 AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 SUPERFAMILY SSF53850 1 243 1.73E-56 T 19-04-2016 AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 SMART SM00062 27 246 5.9E-46 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 243 2.0E-50 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9065 cca5b3ea90f6469043d4c3ab80ac61f0 260 PANTHER PTHR18966:SF191 27 241 1.4E-27 T 19-04-2016 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 246 259 7.2E-31 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 286 299 7.2E-31 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 234 246 7.2E-31 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 321 337 7.2E-31 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PRINTS PR00981 Seryl-tRNA synthetase signature 303 319 7.2E-31 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 TIGRFAM TIGR00414 serS: serine--tRNA ligase 2 385 1.1E-126 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 SUPERFAMILY SSF46589 2 85 3.71E-16 T 19-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 193 368 7.0E-25 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 Gene3D G3DSA:1.10.287.40 2 77 4.7E-17 T 19-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PIRSF PIRSF001529 1 394 6.7E-136 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PANTHER PTHR11778:SF8 1 393 1.4E-241 T 19-04-2016 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 2 80 4.9E-13 T 19-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 PANTHER PTHR11778 1 393 1.4E-241 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 SUPERFAMILY SSF55681 87 389 2.49E-86 T 19-04-2016 AMED_0193 5dc3355bffea4ec97633d3474e7dd937 394 Gene3D G3DSA:3.30.930.10 78 389 2.7E-122 T 19-04-2016 AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 Gene3D G3DSA:2.60.40.10 42 120 5.4E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 PANTHER PTHR33307 22 144 8.9E-236 T 19-04-2016 AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 PANTHER PTHR33307 309 1021 8.9E-236 T 19-04-2016 AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 Gene3D G3DSA:2.60.120.260 512 592 4.4E-10 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 331 500 1.7E-53 T 19-04-2016 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 SUPERFAMILY SSF48208 611 1019 2.98E-41 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 PIRSF PIRSF010631 1 1063 1.7E-274 T 19-04-2016 IPR016007 Alpha-L-rhamnosidase AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 Pfam PF05592 Bacterial alpha-L-rhamnosidase 510 1018 5.7E-167 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 PANTHER PTHR33307:SF5 22 144 8.9E-236 T 19-04-2016 AMED_5782 17b1065abf1d385f27224b2d53691f24 1063 PANTHER PTHR33307:SF5 309 1021 8.9E-236 T 19-04-2016 AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 Gene3D G3DSA:1.10.10.10 6 83 7.8E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 SUPERFAMILY SSF53335 91 334 3.08E-45 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 PIRSF PIRSF005739 5 335 4.9E-27 T 19-04-2016 IPR016461 O-methyltransferase COMT-type GO:0008168 AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 PANTHER PTHR11746 10 325 6.5E-48 T 19-04-2016 AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 Pfam PF00891 O-methyltransferase 102 321 1.4E-32 T 19-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 SUPERFAMILY SSF46785 11 83 3.02E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 Pfam PF16864 Dimerisation domain 11 91 3.3E-8 T 19-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 Gene3D G3DSA:3.40.50.150 90 335 4.4E-54 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5440 49ff2e2cd7d05f2a6ce2beace2439f50 338 PANTHER PTHR11746:SF63 10 325 6.5E-48 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 455 1.0E-23 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 SUPERFAMILY SSF51905 128 336 5.49E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 SUPERFAMILY SSF51905 3 96 5.49E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 Gene3D G3DSA:3.30.390.30 342 459 1.0E-29 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PANTHER PTHR22912:SF20 138 459 2.6E-156 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PANTHER PTHR22912:SF20 2 118 2.6E-156 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PANTHER PTHR22912 138 459 2.6E-156 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 327 1.2E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 Gene3D G3DSA:3.50.50.60 3 143 6.1E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PIRSF PIRSF000350 1 456 7.4E-76 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 9.0E-51 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 Gene3D G3DSA:3.50.50.60 144 336 1.3E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.5E-35 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 1.5E-35 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 1.5E-35 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 1.5E-35 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 1.5E-35 T 19-04-2016 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 SUPERFAMILY SSF55424 346 460 6.7E-27 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_0920 1cbeac165aebb4edb0faedca793ff0dd 466 PANTHER PTHR22912 2 118 2.6E-156 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 PANTHER PTHR23501 26 471 5.7E-124 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 146 170 4.2E-10 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 116 136 4.2E-10 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 4.2E-10 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 PANTHER PTHR23501:SF63 26 471 5.7E-124 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 Pfam PF07690 Major Facilitator Superfamily 26 423 9.0E-51 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 Gene3D G3DSA:1.20.1250.20 23 202 4.9E-30 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 429 9.2E-88 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 Gene3D G3DSA:1.20.1250.20 281 472 1.1E-16 T 19-04-2016 AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 SUPERFAMILY SSF103473 261 473 4.58E-64 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3467 3f5e8fe73ee206e8b6389364fca2dde8 487 SUPERFAMILY SSF103473 2 203 4.58E-64 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 Pfam PF04542 Sigma-70 region 2 48 101 5.6E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 SUPERFAMILY SSF88659 145 220 2.06E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 217 9.1E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 PANTHER PTHR30173 11 222 2.9E-36 T 19-04-2016 AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 Pfam PF08281 Sigma-70, region 4 162 212 1.6E-9 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 SUPERFAMILY SSF88946 21 113 3.81E-20 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 Gene3D G3DSA:1.10.10.10 159 221 1.2E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3519 d508b5391a71d13454ed18d1f92abc1b 225 Gene3D G3DSA:1.10.1740.10 21 121 2.2E-23 T 19-04-2016 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 PANTHER PTHR10668 428 553 2.4E-215 T 19-04-2016 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 Pfam PF00732 GMC oxidoreductase 15 283 2.4E-12 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 PANTHER PTHR10668:SF68 13 411 2.4E-215 T 19-04-2016 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 PANTHER PTHR10668 13 411 2.4E-215 T 19-04-2016 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 464 531 1.2E-82 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 14 135 1.2E-82 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 202 306 1.2E-82 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 Gene3D G3DSA:3.50.50.60 402 415 1.2E-82 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 Pfam PF05199 GMC oxidoreductase 468 525 7.6E-13 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 PANTHER PTHR10668:SF68 428 553 2.4E-215 T 19-04-2016 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 SUPERFAMILY SSF51905 11 308 1.62E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0775 a0845e13c3276bec7a0185642e84532c 570 SUPERFAMILY SSF51905 470 529 1.62E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 SMART SM01133 65 305 3.4E-70 T 19-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 PANTHER PTHR10889:SF3 37 316 8.5E-123 T 19-04-2016 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 PANTHER PTHR10889 37 316 8.5E-123 T 19-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 Gene3D G3DSA:3.20.20.70 59 316 9.8E-90 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 67 281 1.8E-53 T 19-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 SUPERFAMILY SSF51569 63 304 4.19E-73 T 19-04-2016 AMED_0882 c1d2c052bab7535aca1e02efb47c0e06 324 Pfam PF01791 DeoC/LacD family aldolase 65 302 2.2E-26 T 19-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 Pfam PF00582 Universal stress protein family 10 143 1.8E-19 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 PANTHER PTHR31964:SF42 10 143 1.3E-18 T 19-04-2016 AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 PANTHER PTHR31964 10 143 1.3E-18 T 19-04-2016 AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 Gene3D G3DSA:3.40.50.620 6 143 1.8E-25 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 SUPERFAMILY SSF52402 11 145 1.67E-22 T 19-04-2016 AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 PRINTS PR01438 Universal stress protein signature 122 144 4.4E-12 T 19-04-2016 IPR006015 Universal stress protein A AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 PRINTS PR01438 Universal stress protein signature 9 27 4.4E-12 T 19-04-2016 IPR006015 Universal stress protein A AMED_5465 aeef3ed6a9ea53e01d3112968990411f 154 PRINTS PR01438 Universal stress protein signature 104 116 4.4E-12 T 19-04-2016 IPR006015 Universal stress protein A AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 Pfam PF01494 FAD binding domain 3 326 6.3E-73 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 Gene3D G3DSA:3.50.50.60 2 164 3.2E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 Gene3D G3DSA:3.50.50.60 251 331 3.2E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PANTHER PTHR13789 3 379 1.1E-87 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 SUPERFAMILY SSF51905 2 159 8.5E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 SUPERFAMILY SSF51905 250 340 8.5E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 314 330 5.8E-43 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 263 278 5.8E-43 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 138 153 5.8E-43 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 5.8E-43 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 314 5.8E-43 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 294 5.8E-43 T 19-04-2016 AMED_1944 f09de56212cfcc8f3f372eaf1a31db31 443 PANTHER PTHR13789:SF90 3 379 1.1E-87 T 19-04-2016 AMED_1833 ab61415b7018c8df72275841fd835864 283 PANTHER PTHR11820:SF71 1 278 5.3E-128 T 19-04-2016 AMED_1833 ab61415b7018c8df72275841fd835864 283 SUPERFAMILY SSF56529 64 280 4.58E-76 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1833 ab61415b7018c8df72275841fd835864 283 Gene3D G3DSA:3.90.850.10 67 280 2.1E-83 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1833 ab61415b7018c8df72275841fd835864 283 PANTHER PTHR11820 1 278 5.3E-128 T 19-04-2016 AMED_1833 ab61415b7018c8df72275841fd835864 283 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 74 279 7.4E-70 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 1 347 26.663 T 19-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 SUPERFAMILY SSF69705 4 99 1.31E-28 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Gene3D G3DSA:3.30.300.20 179 257 1.1E-32 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 PANTHER PTHR22648:SF0 1 321 2.1E-127 T 19-04-2016 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 67 322 1.5E-100 T 19-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 SMART SM00316 110 180 4.8E-5 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Pfam PF13184 NusA-like KH domain 210 277 5.4E-25 T 19-04-2016 IPR025249 KH domain, NusA-like GO:0003723 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 SUPERFAMILY SSF54814 259 322 4.05E-17 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Gene3D G3DSA:3.30.300.20 258 322 7.2E-31 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Gene3D G3DSA:3.30.1480.10 4 99 4.8E-31 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Pfam PF08529 NusA N-terminal domain 6 60 8.9E-10 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Pfam PF08529 NusA N-terminal domain 67 100 7.4E-7 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 Gene3D G3DSA:2.40.50.140 106 178 2.1E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 SUPERFAMILY SSF54814 180 258 3.79E-27 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 PANTHER PTHR22648 1 321 2.1E-127 T 19-04-2016 AMED_6340 dee33faec7a85a1d3d721fabec6168cb 348 SUPERFAMILY SSF50249 109 179 4.78E-17 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6643 2115e9c3a5256860f5981cdc9830607a 521 TIGRFAM TIGR00800 ncs1: NCS1 nucleoside transporter family 33 455 3.9E-125 T 19-04-2016 IPR012681 Nucleobase cation symporter-1, NCS1 GO:0005215|GO:0006810|GO:0016020 AMED_6643 2115e9c3a5256860f5981cdc9830607a 521 PANTHER PTHR30618 29 509 1.7E-182 T 19-04-2016 AMED_6643 2115e9c3a5256860f5981cdc9830607a 521 PANTHER PTHR30618:SF0 29 509 1.7E-182 T 19-04-2016 AMED_6643 2115e9c3a5256860f5981cdc9830607a 521 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 38 486 2.1E-131 T 19-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 PANTHER PTHR30146 11 348 1.5E-102 T 19-04-2016 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Pfam PF13377 Periplasmic binding protein-like domain 182 346 2.0E-38 T 19-04-2016 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Gene3D G3DSA:1.10.260.40 15 63 1.2E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 SUPERFAMILY SSF47413 13 70 3.06E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 SUPERFAMILY SSF53822 73 346 1.49E-64 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 SMART SM00354 12 82 9.3E-21 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Gene3D G3DSA:3.40.50.2300 186 324 1.2E-43 T 19-04-2016 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Gene3D G3DSA:3.40.50.2300 64 185 3.1E-40 T 19-04-2016 AMED_4538 dfaadc1cb5dc9038dc80d0155a0c6c51 348 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 59 2.2E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00412 Epoxide hydrolase signature 107 120 1.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00412 Epoxide hydrolase signature 258 280 1.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00412 Epoxide hydrolase signature 30 48 1.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00412 Epoxide hydrolase signature 93 106 1.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PANTHER PTHR10992 3 283 6.8E-68 T 19-04-2016 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 Gene3D G3DSA:3.40.50.1820 7 281 4.2E-74 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 1.5E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 1.5E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 1.5E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 Pfam PF00561 alpha/beta hydrolase fold 24 268 5.1E-27 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 SUPERFAMILY SSF53474 7 282 1.41E-79 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0406 30329fe540f2cdf4d637705dcd344ad0 283 PANTHER PTHR10992:SF778 3 283 6.8E-68 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 567 583 1.1E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 937 965 1.1E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 846 905 1.1E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 458 493 1.1E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 362 421 1.1E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887 458 484 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887 738 895 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887 514 528 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887 922 1131 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887 351 427 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887:SF350 458 484 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887:SF350 738 895 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887:SF350 514 528 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887:SF350 922 1131 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 PANTHER PTHR10887:SF350 351 427 5.9E-92 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Pfam PF13087 AAA domain 1016 1104 1.0E-9 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Pfam PF13086 AAA domain 830 886 4.8E-8 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 SUPERFAMILY SSF52540 377 420 1.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 SUPERFAMILY SSF52540 461 536 1.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 SUPERFAMILY SSF52540 825 883 1.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 SUPERFAMILY SSF52540 937 1110 1.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Pfam PF13245 Part of AAA domain 393 484 1.0E-7 T 19-04-2016 AMED_4601 1603e8bbb5682d350beeb734fa501431 1137 Gene3D G3DSA:3.40.50.300 1039 1105 1.8E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 Pfam PF00672 HAMP domain 172 238 1.4E-15 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 465 1.7E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 SMART SM00388 245 317 2.1E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 SMART SM00304 192 244 9.9E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 SUPERFAMILY SSF55874 307 465 1.44E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 Gene3D G3DSA:1.10.287.130 239 313 1.8E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 SUPERFAMILY SSF47384 228 316 4.71E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 PANTHER PTHR24423 186 465 9.9E-64 T 19-04-2016 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 PANTHER PTHR24423 3 8 9.9E-64 T 19-04-2016 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 Gene3D G3DSA:3.30.565.10 320 466 7.9E-40 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 1.4E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 1.4E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 1.4E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 1.4E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 SUPERFAMILY SSF158472 195 240 6.28E-6 T 19-04-2016 AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 SMART SM00387 357 468 1.7E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8332 d3c345d42810d3c745e393c15a0660e6 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 316 2.4E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8658 39f47d7ec5e6fabeb01344698d27bd08 131 PANTHER PTHR33570 1 128 7.4E-32 T 19-04-2016 AMED_8658 39f47d7ec5e6fabeb01344698d27bd08 131 SUPERFAMILY SSF69118 1 125 6.41E-35 T 19-04-2016 IPR029032 AhpD-like AMED_8658 39f47d7ec5e6fabeb01344698d27bd08 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 33 114 2.1E-20 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8658 39f47d7ec5e6fabeb01344698d27bd08 131 PANTHER PTHR33570:SF4 1 128 7.4E-32 T 19-04-2016 AMED_8658 39f47d7ec5e6fabeb01344698d27bd08 131 Gene3D G3DSA:1.20.1290.10 2 125 2.1E-36 T 19-04-2016 IPR029032 AhpD-like AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 PANTHER PTHR23501 12 447 1.5E-103 T 19-04-2016 AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 SUPERFAMILY SSF103473 11 196 1.44E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 SUPERFAMILY SSF103473 241 445 1.44E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 412 9.6E-83 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 Gene3D G3DSA:1.20.1250.20 19 191 2.5E-23 T 19-04-2016 AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 Gene3D G3DSA:1.20.1250.20 256 447 3.8E-18 T 19-04-2016 AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 Pfam PF07690 Major Facilitator Superfamily 20 402 5.6E-48 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0140 3a9b9328bff7c013d2b7d0abcb6cd583 450 PANTHER PTHR23501:SF66 12 447 1.5E-103 T 19-04-2016 AMED_5815 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5815 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_5815 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_5815 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_5815 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7811 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7811 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_7811 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_7811 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_7811 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5521 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5521 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_5521 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_5521 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_5521 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1443 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1443 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_1443 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_1443 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_1443 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1452 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1452 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_1452 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_1452 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_1452 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7324 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7324 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_7324 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_7324 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_7324 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7909 24f010ccddfde7a997208c143f0941ce 305 Gene3D G3DSA:3.30.420.10 138 294 7.4E-29 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7909 24f010ccddfde7a997208c143f0941ce 305 PANTHER PTHR32552 20 298 7.0E-40 T 19-04-2016 AMED_7909 24f010ccddfde7a997208c143f0941ce 305 Pfam PF13276 HTH-like domain 60 114 1.8E-12 T 19-04-2016 IPR025948 HTH-like domain AMED_7909 24f010ccddfde7a997208c143f0941ce 305 Pfam PF00665 Integrase core domain 145 256 2.3E-20 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_7909 24f010ccddfde7a997208c143f0941ce 305 SUPERFAMILY SSF53098 136 299 4.4E-32 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PANTHER PTHR24322 9 127 1.2E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PANTHER PTHR24322 143 172 1.2E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_9276 d5405375b22db39ca4bbf395ec073659 225 Pfam PF00106 short chain dehydrogenase 7 185 1.2E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 174 0.0069 T 19-04-2016 AMED_9276 d5405375b22db39ca4bbf395ec073659 225 SUPERFAMILY SSF51735 7 213 2.76E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 1.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 1.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 1.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 Gene3D G3DSA:3.40.50.720 6 211 1.2E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 6.7E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 6.7E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9276 d5405375b22db39ca4bbf395ec073659 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 6.7E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0388 bd3cea7f6a5747c60905e69dc0bf1c12 354 SUPERFAMILY SSF51726 2 352 3.66E-75 T 19-04-2016 AMED_0388 bd3cea7f6a5747c60905e69dc0bf1c12 354 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 3 324 6.6E-10 T 19-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 AMED_0388 bd3cea7f6a5747c60905e69dc0bf1c12 354 PANTHER PTHR30519 1 352 6.3E-141 T 19-04-2016 AMED_0388 bd3cea7f6a5747c60905e69dc0bf1c12 354 PANTHER PTHR30519:SF3 1 352 6.3E-141 T 19-04-2016 AMED_0388 bd3cea7f6a5747c60905e69dc0bf1c12 354 Gene3D G3DSA:3.20.20.210 2 353 1.9E-101 T 19-04-2016 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 Pfam PF00355 Rieske [2Fe-2S] domain 37 119 8.4E-19 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 Gene3D G3DSA:3.90.380.10 142 368 3.3E-18 T 19-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 SUPERFAMILY SSF55961 171 369 1.18E-43 T 19-04-2016 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 Gene3D G3DSA:2.102.10.10 37 141 6.7E-23 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 181 371 1.0E-43 T 19-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PANTHER PTHR21266:SF2 7 368 3.6E-79 T 19-04-2016 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 SUPERFAMILY SSF50022 12 150 6.68E-43 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 51 66 2.1E-21 T 19-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 94 114 2.1E-21 T 19-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 21 46 2.1E-21 T 19-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 72 92 2.1E-21 T 19-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 179 201 2.1E-21 T 19-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AMED_7556 0b15f432489e7150252aa15c9e2fc48c 373 PANTHER PTHR21266 7 368 3.6E-79 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 274 293 3.0E-18 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 435 450 3.0E-18 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 418 433 3.0E-18 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 483 3.0E-18 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 52 521 1.1E-104 T 19-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 Pfam PF00391 PEP-utilising enzyme, mobile domain 148 218 2.1E-19 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 SUPERFAMILY SSF51621 239 520 4.97E-85 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 244 511 1.5E-79 T 19-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PANTHER PTHR22931:SF28 64 521 1.4E-124 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 Gene3D G3DSA:3.20.20.60 244 521 6.4E-87 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 Gene3D G3DSA:1.10.274.10 32 128 1.5E-16 T 19-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PIRSF PIRSF000732 1 522 6.3E-143 T 19-04-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 Gene3D G3DSA:3.50.30.10 129 222 4.7E-29 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 Pfam PF05524 PEP-utilising enzyme, N-terminal 5 121 7.5E-18 T 19-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 179 190 - T 19-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 PANTHER PTHR22931 64 521 1.4E-124 T 19-04-2016 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 418 436 - T 19-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 SUPERFAMILY SSF47831 31 138 4.84E-18 T 19-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMED_4503 4b1bb051d29c445231fcc9822a2c5dcc 522 SUPERFAMILY SSF52009 120 223 1.31E-26 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 6.7E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 SUPERFAMILY SSF46689 8 74 2.64E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 Gene3D G3DSA:1.10.357.10 64 196 5.5E-20 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 PANTHER PTHR30055 2 196 4.3E-26 T 19-04-2016 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 SUPERFAMILY SSF48498 86 196 1.28E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 Gene3D G3DSA:1.10.10.60 8 63 3.5E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8891 09ca86c00d69e76ec7a80178ff074cc0 200 Pfam PF16925 Bacterial transcriptional repressor C-terminal 91 186 1.4E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 PANTHER PTHR11274 5 548 3.8E-190 T 19-04-2016 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 Pfam PF13625 Helicase conserved C-terminal domain 6 134 3.8E-45 T 19-04-2016 IPR032830 Helicase XPB/Ssl2, N-terminal domain AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 SUPERFAMILY SSF52540 387 527 5.79E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 SUPERFAMILY SSF52540 284 354 5.79E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 SMART SM00487 178 353 8.5E-23 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 SMART SM00490 420 500 1.0E-10 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 456 474 2.7E-35 T 19-04-2016 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 291 311 2.7E-35 T 19-04-2016 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 356 378 2.7E-35 T 19-04-2016 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 191 213 2.7E-35 T 19-04-2016 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 PRINTS PR00851 Xeroderma pigmentosum group B protein signature 475 500 2.7E-35 T 19-04-2016 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 SUPERFAMILY SSF52540 148 345 1.25E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 Pfam PF04851 Type III restriction enzyme, res subunit 181 326 1.4E-13 T 19-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 Gene3D G3DSA:3.40.50.300 387 536 1.0E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 Pfam PF16203 ERCC3/RAD25/XPB C-terminal helicase 353 540 8.7E-46 T 19-04-2016 IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain AMED_8547 60520307fce2c37e78ffdfde1b536bd4 548 Gene3D G3DSA:3.40.50.300 179 344 1.7E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2446 1accd09767af6545e40572664e938f0f 135 SUPERFAMILY SSF55961 8 113 6.47E-8 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.90.640.10 204 283 1.5E-8 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 PANTHER PTHR19375:SF184 2 350 1.4E-55 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 SUPERFAMILY SSF53067 5 156 3.89E-30 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 Pfam PF00012 Hsp70 protein 5 75 3.0E-7 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 Pfam PF00012 Hsp70 protein 90 355 1.6E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 308 322 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 336 356 1.8E-12 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.8E-12 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 175 185 1.8E-12 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 PRINTS PR00301 70kDa heat shock protein signature 305 321 1.8E-12 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 SUPERFAMILY SSF53067 164 351 2.39E-38 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.30.420.40 290 330 7.9E-18 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.30.420.40 173 203 7.9E-18 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 169 182 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 Gene3D G3DSA:3.30.420.40 5 172 5.1E-31 T 19-04-2016 AMED_5168 547681414cbc7418c9d10bd7ab0ce27f 524 PANTHER PTHR19375 2 350 1.4E-55 T 19-04-2016 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF01493 GXGXG motif 1272 1454 9.8E-81 T 19-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF00310 Glutamine amidotransferases class-II 33 449 1.3E-181 T 19-04-2016 IPR017932 Glutamine amidotransferase type 2 domain AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:2.160.20.60 1246 1516 6.9E-107 T 19-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:3.20.20.70 461 810 8.5E-104 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:3.60.20.10 33 460 6.4E-188 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Gene3D G3DSA:3.20.20.70 874 1225 4.8E-177 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 PANTHER PTHR11938:SF1 22 1505 0.0 T 19-04-2016 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF01645 Conserved region in glutamate synthase 827 1192 3.4E-154 T 19-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 SUPERFAMILY SSF69336 1241 1501 6.41E-93 T 19-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 SUPERFAMILY SSF56235 33 451 4.18E-153 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 PANTHER PTHR11938 22 1505 0.0 T 19-04-2016 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 Pfam PF04898 Glutamate synthase central domain 475 762 7.1E-110 T 19-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 AMED_7036 cd61db1415dc067f2cea7c6a8478b265 1523 SUPERFAMILY SSF51395 470 1228 8.14E-260 T 19-04-2016 AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 SUPERFAMILY SSF53474 198 298 4.02E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 SUPERFAMILY SSF53474 6 144 4.02E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 Gene3D G3DSA:3.40.50.1820 229 298 1.3E-45 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 Gene3D G3DSA:3.40.50.1820 7 139 1.3E-45 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 PANTHER PTHR17630 235 298 1.1E-28 T 19-04-2016 AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 PANTHER PTHR17630 32 145 1.1E-28 T 19-04-2016 AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 PANTHER PTHR17630:SF50 32 145 1.1E-28 T 19-04-2016 AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 PANTHER PTHR17630:SF50 235 298 1.1E-28 T 19-04-2016 AMED_8177 99e656ac8353bb7e2de0bbfa7f6e902e 302 Pfam PF12697 Alpha/beta hydrolase family 33 288 6.4E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6109 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF49785 475 609 1.11E-13 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6109 5986a252331d24805d4f1f961be3771c 954 Pfam PF00005 ABC transporter 675 815 1.6E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6109 5986a252331d24805d4f1f961be3771c 954 PANTHER PTHR24220 659 873 1.8E-91 T 19-04-2016 AMED_6109 5986a252331d24805d4f1f961be3771c 954 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 480 587 5.9E-9 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6109 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:3.40.50.1820 283 388 5.2E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6109 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:3.40.50.1820 58 196 5.2E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6109 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF53474 48 192 3.92E-40 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6109 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF53474 286 390 3.92E-40 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6109 5986a252331d24805d4f1f961be3771c 954 SMART SM00939 381 603 4.0E-6 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6109 5986a252331d24805d4f1f961be3771c 954 PANTHER PTHR24220:SF427 659 873 1.8E-91 T 19-04-2016 AMED_6109 5986a252331d24805d4f1f961be3771c 954 ProSitePatterns PS00211 ABC transporters family signature. 787 801 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6109 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:2.60.120.260 475 611 1.6E-15 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6109 5986a252331d24805d4f1f961be3771c 954 SUPERFAMILY SSF52540 656 878 3.69E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6109 5986a252331d24805d4f1f961be3771c 954 SMART SM00382 683 864 2.3E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6109 5986a252331d24805d4f1f961be3771c 954 Gene3D G3DSA:3.40.50.300 657 878 4.7E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6109 5986a252331d24805d4f1f961be3771c 954 Pfam PF12146 Serine aminopeptidase, S33 73 177 4.3E-13 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_8964 8760792aa8d492c6db8adf8fa35327d6 649 Pfam PF04185 Phosphoesterase family 38 422 1.1E-109 T 19-04-2016 IPR007312 Phosphoesterase GO:0016788 AMED_8964 8760792aa8d492c6db8adf8fa35327d6 649 Pfam PF05506 Domain of unknown function (DUF756) 490 570 3.7E-11 T 19-04-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 AMED_8964 8760792aa8d492c6db8adf8fa35327d6 649 PANTHER PTHR31956 3 451 3.1E-137 T 19-04-2016 AMED_8964 8760792aa8d492c6db8adf8fa35327d6 649 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 6 649 1.1E-202 T 19-04-2016 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 AMED_8964 8760792aa8d492c6db8adf8fa35327d6 649 PANTHER PTHR31956:SF6 3 451 3.1E-137 T 19-04-2016 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 Gene3D G3DSA:2.40.10.10 218 338 3.3E-40 T 19-04-2016 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 176 196 1.3E-27 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 271 288 1.3E-27 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 155 167 1.3E-27 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 PRINTS PR00834 HtrA/DegQ protease family signature 293 310 1.3E-27 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 PANTHER PTHR22939:SF79 61 339 3.2E-80 T 19-04-2016 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 PANTHER PTHR22939 61 339 3.2E-80 T 19-04-2016 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 SUPERFAMILY SSF50494 120 336 2.74E-54 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 Gene3D G3DSA:2.40.10.10 140 217 5.0E-28 T 19-04-2016 AMED_7079 e8d7fef4af8e42f46ea893beacc5656f 339 Pfam PF13365 Trypsin-like peptidase domain 146 300 6.9E-34 T 19-04-2016 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 Pfam PF00672 HAMP domain 302 368 3.0E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 527 1.0E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 541 1.0E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 1.0E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 585 1.0E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 PANTHER PTHR24423 315 585 6.5E-81 T 19-04-2016 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 PANTHER PTHR24423 260 274 6.5E-81 T 19-04-2016 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 477 586 2.1E-27 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 Gene3D G3DSA:3.30.565.10 425 586 1.3E-47 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 SUPERFAMILY SSF55874 427 586 1.44E-45 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 SMART SM00304 321 373 9.5E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 SUPERFAMILY SSF158472 322 368 7.32E-7 T 19-04-2016 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 SMART SM00388 374 438 1.8E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 Pfam PF00512 His Kinase A (phospho-acceptor) domain 375 438 6.4E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 SUPERFAMILY SSF47384 357 438 1.12E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 SMART SM00387 476 588 2.4E-42 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3541 8f3f10a5262f14648ccc2f4ac595d31f 590 Gene3D G3DSA:1.10.287.130 364 424 7.3E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 PANTHER PTHR30173 1 186 2.0E-34 T 19-04-2016 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 Pfam PF04542 Sigma-70 region 2 29 94 8.3E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 SUPERFAMILY SSF88659 119 183 5.45E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 Gene3D G3DSA:1.10.1740.10 7 114 1.7E-19 T 19-04-2016 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 SUPERFAMILY SSF88946 7 102 2.75E-17 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 Gene3D G3DSA:1.10.10.10 122 184 1.1E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3338 09c169fdd2c9aac082222acf4d693150 196 Pfam PF08281 Sigma-70, region 4 128 177 1.6E-16 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3338 09c169fdd2c9aac082222acf4d693150 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 182 1.5E-25 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 SUPERFAMILY SSF50156 192 297 2.23E-15 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 Gene3D G3DSA:2.30.42.10 209 300 1.3E-18 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 143 160 3.7E-44 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 247 259 3.7E-44 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 42 54 3.7E-44 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 165 182 3.7E-44 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 63 83 3.7E-44 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PRINTS PR00834 HtrA/DegQ protease family signature 103 127 3.7E-44 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PANTHER PTHR22939 29 300 1.0E-73 T 19-04-2016 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 Pfam PF13365 Trypsin-like peptidase domain 33 172 4.9E-30 T 19-04-2016 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 Gene3D G3DSA:2.40.10.10 29 103 3.9E-21 T 19-04-2016 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 SMART SM00228 207 289 1.0E-8 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 Pfam PF13180 PDZ domain 229 294 1.9E-11 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 PANTHER PTHR22939:SF79 29 300 1.0E-73 T 19-04-2016 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 Gene3D G3DSA:2.40.10.10 104 208 4.2E-35 T 19-04-2016 AMED_8570 951d7f6b91f36b84d1fd1fcba5371b70 303 SUPERFAMILY SSF50494 7 214 1.49E-45 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_7340 150baace718455716c17edbc2366e555 238 SUPERFAMILY SSF88946 8 86 1.49E-22 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7340 150baace718455716c17edbc2366e555 238 PANTHER PTHR30173 1 231 9.1E-62 T 19-04-2016 AMED_7340 150baace718455716c17edbc2366e555 238 SUPERFAMILY SSF88659 125 184 3.55E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7340 150baace718455716c17edbc2366e555 238 Pfam PF04542 Sigma-70 region 2 17 80 1.1E-18 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7340 150baace718455716c17edbc2366e555 238 PANTHER PTHR30173:SF22 1 231 9.1E-62 T 19-04-2016 AMED_7340 150baace718455716c17edbc2366e555 238 Gene3D G3DSA:1.10.10.10 126 183 9.1E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7340 150baace718455716c17edbc2366e555 238 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 186 2.3E-25 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7340 150baace718455716c17edbc2366e555 238 Gene3D G3DSA:1.10.1740.10 7 94 2.3E-26 T 19-04-2016 AMED_7340 150baace718455716c17edbc2366e555 238 Pfam PF08281 Sigma-70, region 4 130 182 1.4E-11 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8839 9c7fd55028fa731e1f847dd44a71ddc3 189 Gene3D G3DSA:3.10.180.10 1 134 1.1E-6 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8839 9c7fd55028fa731e1f847dd44a71ddc3 189 Pfam PF13468 Glyoxalase-like domain 3 144 1.9E-18 T 19-04-2016 IPR025870 Glyoxalase-like domain AMED_8839 9c7fd55028fa731e1f847dd44a71ddc3 189 SUPERFAMILY SSF54593 1 149 2.42E-10 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 205 1.9E-76 T 19-04-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 127 141 - T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 SUPERFAMILY SSF53182 1 210 1.57E-64 T 19-04-2016 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PANTHER PTHR23402:SF1 1 212 8.8E-57 T 19-04-2016 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PIRSF PIRSF015592 1 211 1.5E-75 T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 159 171 8.9E-44 T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 8.9E-44 T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 77 97 8.9E-44 T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 129 145 8.9E-44 T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 59 71 8.9E-44 T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 Gene3D G3DSA:3.40.630.20 2 205 4.8E-61 T 19-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 PANTHER PTHR23402 1 212 8.8E-57 T 19-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 Pfam PF01470 Pyroglutamyl peptidase 3 199 4.3E-70 T 19-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 199 37.341 T 19-04-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 AMED_8723 5d7e0ac6192bbdfac208576544e84132 213 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 66 82 - T 19-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 PIRSF PIRSF000077 1 107 4.7E-44 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 104 1.9E-38 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 PRINTS PR00421 Thioredoxin family signature 71 82 1.7E-8 T 19-04-2016 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 PRINTS PR00421 Thioredoxin family signature 31 40 1.7E-8 T 19-04-2016 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 PRINTS PR00421 Thioredoxin family signature 23 31 1.7E-8 T 19-04-2016 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 Gene3D G3DSA:3.40.30.10 4 104 5.6E-37 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 SUPERFAMILY SSF52833 3 107 9.26E-38 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 Pfam PF00085 Thioredoxin 5 104 2.8E-33 T 19-04-2016 IPR013766 Thioredoxin domain GO:0045454 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 PANTHER PTHR10438 5 107 6.8E-38 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_9354 77db9dc67593e20394b7bbaff8b7047d 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 Pfam PF13602 Zinc-binding dehydrogenase 190 312 2.5E-22 T 19-04-2016 AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 Gene3D G3DSA:3.40.50.720 155 250 1.1E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 89 1.0E-7 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 Gene3D G3DSA:3.90.180.10 1 154 2.5E-38 T 19-04-2016 IPR011032 GroES-like AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 PANTHER PTHR11695 15 314 2.2E-78 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 SMART SM00829 10 312 8.2E-24 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 SUPERFAMILY SSF51735 120 289 6.51E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 SUPERFAMILY SSF50129 1 145 2.43E-33 T 19-04-2016 IPR011032 GroES-like AMED_1427 f505d5c9690cee9a2327afd7efaee81d 316 PANTHER PTHR11695:SF294 15 314 2.2E-78 T 19-04-2016 AMED_5167 c37991e6b25d51df79a5e8dd1c8274b8 109 Gene3D G3DSA:3.30.70.830 2 106 7.5E-38 T 19-04-2016 AMED_5167 c37991e6b25d51df79a5e8dd1c8274b8 109 PANTHER PTHR23419 6 107 1.1E-37 T 19-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AMED_5167 c37991e6b25d51df79a5e8dd1c8274b8 109 PANTHER PTHR23419:SF0 6 107 1.1E-37 T 19-04-2016 AMED_5167 c37991e6b25d51df79a5e8dd1c8274b8 109 Pfam PF03091 CutA1 divalent ion tolerance protein 7 102 2.2E-33 T 19-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AMED_5167 c37991e6b25d51df79a5e8dd1c8274b8 109 SUPERFAMILY SSF54913 3 106 2.3E-34 T 19-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 SUPERFAMILY SSF51905 6 190 4.15E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 7.3E-13 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 7.3E-13 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 7.3E-13 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 7.3E-13 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Gene3D G3DSA:3.50.50.60 227 315 5.1E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Gene3D G3DSA:3.30.390.30 327 385 3.3E-6 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 303 2.0E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Gene3D G3DSA:3.50.50.60 106 226 1.3E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PANTHER PTHR22912 1 374 1.6E-69 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PANTHER PTHR22912:SF180 1 374 1.6E-69 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 SUPERFAMILY SSF51905 145 311 2.97E-21 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 SUPERFAMILY SSF55424 318 388 6.87E-8 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 Gene3D G3DSA:3.50.50.60 5 105 4.9E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.0E-15 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 2.0E-15 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 2.0E-15 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 2.0E-15 T 19-04-2016 AMED_2536 19cabb4bda03cb9e3d8f52cdb9d56ed5 479 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.0E-15 T 19-04-2016 AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 PANTHER PTHR11219:SF46 1164 1614 1.7E-42 T 19-04-2016 AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1058 1095 2.1E-7 T 19-04-2016 IPR006530 YD repeat AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1100 1131 8.4E-7 T 19-04-2016 IPR006530 YD repeat AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1537 1615 2.5E-15 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 PANTHER PTHR11219 1164 1614 1.7E-42 T 19-04-2016 AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 Pfam PF05593 RHS Repeat 1058 1092 1.0E-7 T 19-04-2016 IPR031325 RHS repeat AMED_3801 61d50c26325583c5f1e3fab53ebd00f9 1858 Pfam PF05593 RHS Repeat 1100 1133 1.1E-6 T 19-04-2016 IPR031325 RHS repeat AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 SUPERFAMILY SSF56672 6 233 4.45E-75 T 19-04-2016 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 PANTHER PTHR11076 7 348 1.2E-107 T 19-04-2016 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Pfam PF00817 impB/mucB/samB family 11 151 3.9E-45 T 19-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Pfam PF11799 impB/mucB/samB family C-terminal domain 238 345 7.2E-18 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Pfam PF11798 IMS family HHH motif 165 195 1.8E-8 T 19-04-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:3.30.1490.100 241 345 6.8E-19 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Hamap MF_01113 DNA polymerase IV [dinB]. 4 363 32.713 T 19-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:3.30.70.270 64 162 3.8E-27 T 19-04-2016 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 Gene3D G3DSA:1.10.150.20 167 234 2.3E-19 T 19-04-2016 AMED_4563 8d1180cda72167df9f5e93f0c320adf6 396 SUPERFAMILY SSF100879 238 340 6.87E-20 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_7754 444573d9c4d61ac2efd8d1b582c58daa 216 PANTHER PTHR38814:SF2 1 216 5.0E-144 T 19-04-2016 AMED_7754 444573d9c4d61ac2efd8d1b582c58daa 216 Hamap MF_00722 Endonuclease NucS [nucS]. 1 208 28.818 T 19-04-2016 IPR002793 Endonuclease NucS AMED_7754 444573d9c4d61ac2efd8d1b582c58daa 216 Pfam PF01939 Protein of unknown function DUF91 1 216 2.0E-79 T 19-04-2016 IPR002793 Endonuclease NucS AMED_7754 444573d9c4d61ac2efd8d1b582c58daa 216 PANTHER PTHR38814 1 216 5.0E-144 T 19-04-2016 AMED_6352 d92331dec5688e74bff0bc24a21f8fa5 123 SUPERFAMILY SSF46785 4 117 1.3E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6352 d92331dec5688e74bff0bc24a21f8fa5 123 Gene3D G3DSA:1.10.10.10 4 117 3.0E-47 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6352 d92331dec5688e74bff0bc24a21f8fa5 123 Pfam PF01638 HxlR-like helix-turn-helix 19 105 2.0E-27 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6352 d92331dec5688e74bff0bc24a21f8fa5 123 PANTHER PTHR33204 2 117 1.5E-47 T 19-04-2016 AMED_6352 d92331dec5688e74bff0bc24a21f8fa5 123 PANTHER PTHR33204:SF6 2 117 1.5E-47 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 Gene3D G3DSA:3.40.1110.10 320 440 4.3E-44 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PANTHER PTHR24093:SF49 32 585 0.0 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PANTHER PTHR24093:SF49 623 677 0.0 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 Gene3D G3DSA:2.70.150.10 52 212 1.5E-23 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 311 317 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PANTHER PTHR24093 32 585 0.0 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PANTHER PTHR24093 623 677 0.0 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF81665 44 111 1.83E-12 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF81665 212 303 1.83E-12 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 Gene3D G3DSA:3.40.50.1000 441 560 3.0E-36 T 19-04-2016 IPR023214 HAD-like domain AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 461 471 3.4E-26 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 3.4E-26 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 158 172 3.4E-26 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 439 450 3.4E-26 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 549 3.4E-26 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 533 3.4E-26 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF81653 113 211 5.1E-20 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 Pfam PF00122 E1-E2 ATPase 80 300 1.7E-43 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 Pfam PF00702 haloacid dehalogenase-like hydrolase 306 528 1.7E-33 T 19-04-2016 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 28 674 0.0 T 19-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 79 595 3.0E-76 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 23 678 39.931 T 19-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMED_1894 9a3894b031bb5bc549b1d7988ecba20d 681 SUPERFAMILY SSF56784 306 562 3.5E-39 T 19-04-2016 IPR023214 HAD-like domain AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 PANTHER PTHR24423 74 353 2.5E-50 T 19-04-2016 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 PANTHER PTHR24423 1 11 2.5E-50 T 19-04-2016 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 Pfam PF00672 HAMP domain 61 129 9.1E-15 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 SUPERFAMILY SSF55874 201 351 4.58E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 Pfam PF00512 His Kinase A (phospho-acceptor) domain 135 197 1.0E-6 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 350 1.2E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 292 1.2E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 331 1.2E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 Gene3D G3DSA:3.30.565.10 200 352 2.6E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 SUPERFAMILY SSF158472 82 130 3.14E-8 T 19-04-2016 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 Gene3D G3DSA:1.10.287.130 124 193 4.4E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 SMART SM00387 240 353 1.2E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 350 4.0E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 SUPERFAMILY SSF47384 117 197 5.89E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 SMART SM00304 80 133 3.3E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8287 14f25c02b3e93934558330ed91e32b1f 365 SMART SM00388 134 198 1.1E-5 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2302 98132463a6b8885ce2ad7324b3dc6429 374 SUPERFAMILY SSF51556 142 371 1.36E-8 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_2302 98132463a6b8885ce2ad7324b3dc6429 374 PANTHER PTHR20852 292 372 1.8E-22 T 19-04-2016 AMED_2302 98132463a6b8885ce2ad7324b3dc6429 374 PANTHER PTHR20852:SF14 292 372 1.8E-22 T 19-04-2016 AMED_2302 98132463a6b8885ce2ad7324b3dc6429 374 Pfam PF04909 Amidohydrolase 218 371 7.1E-9 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_2302 98132463a6b8885ce2ad7324b3dc6429 374 Gene3D G3DSA:3.20.20.140 2 372 4.8E-107 T 19-04-2016 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 SUPERFAMILY SSF50494 147 356 4.09E-38 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 SUPERFAMILY SSF50156 383 450 2.1E-15 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 SMART SM00228 372 442 3.0E-12 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 Gene3D G3DSA:2.40.10.10 142 238 2.2E-24 T 19-04-2016 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 Gene3D G3DSA:2.30.42.10 373 450 9.3E-18 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 Pfam PF13365 Trypsin-like peptidase domain 176 321 3.3E-22 T 19-04-2016 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PANTHER PTHR22939:SF79 34 438 1.7E-66 T 19-04-2016 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 Pfam PF13180 PDZ domain 372 439 5.0E-16 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 207 227 5.2E-24 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 248 272 5.2E-24 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 400 412 5.2E-24 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 292 309 5.2E-24 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 185 197 5.2E-24 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PRINTS PR00834 HtrA/DegQ protease family signature 314 331 5.2E-24 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 PANTHER PTHR22939 34 438 1.7E-66 T 19-04-2016 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 Gene3D G3DSA:2.40.10.10 239 354 8.9E-23 T 19-04-2016 AMED_7547 a6b4dc5386dd3c68b831ff0fb3711366 458 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 301 312 - T 19-04-2016 IPR033116 Serine proteases, trypsin family, serine active site AMED_4850 6a30054c971cf1811d33e5640b50225d 471 Pfam PF01979 Amidohydrolase family 56 406 2.9E-30 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 Gene3D G3DSA:2.30.40.10 1 67 4.5E-27 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 SUPERFAMILY SSF51556 59 355 1.2E-54 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_4850 6a30054c971cf1811d33e5640b50225d 471 Gene3D G3DSA:3.20.20.140 68 339 5.9E-44 T 19-04-2016 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 SUPERFAMILY SSF51338 4 59 1.81E-27 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 SUPERFAMILY SSF51338 356 431 1.81E-27 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 PANTHER PTHR11271:SF7 5 433 4.7E-70 T 19-04-2016 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 PANTHER PTHR11271 5 433 4.7E-70 T 19-04-2016 AMED_4850 6a30054c971cf1811d33e5640b50225d 471 Gene3D G3DSA:2.30.40.10 340 412 1.3E-20 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF08659 KR domain 1793 1969 4.7E-52 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 930 1028 5.3E-14 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 811 927 2.1E-41 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM01294 2054 2121 5.6E-5 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.50.720 1792 2003 3.7E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF47336 464 569 2.22E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF47336 2050 2124 5.37E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF00698 Acyl transferase domain 1069 1333 1.5E-43 T 19-04-2016 IPR014043 Acyl transferase AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF52151 1250 1345 2.46E-65 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF52151 1065 1188 2.46E-65 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.50.980 18 158 8.2E-31 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.47.10 556 815 2.3E-88 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:2.30.38.10 318 364 1.1E-9 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF53901 955 976 3.04E-97 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF53901 550 923 3.04E-97 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 ProSitePatterns PS00455 Putative AMP-binding domain signature. 152 163 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 PANTHER PTHR11712 487 2124 0.0 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM00823 Phosphopantetheine attachment site 2053 2125 3.6E-25 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM00823 Phosphopantetheine attachment site 466 537 9.0E-12 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF51735 1791 2026 1.79E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1069 1356 5.1E-89 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:1.10.1200.10 2050 2124 6.9E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:1.10.1200.10 464 535 1.9E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF56801 16 466 3.53E-114 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF14765 Polyketide synthase dehydratase 1405 1652 2.4E-36 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2080 2095 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.47.10 816 980 4.5E-64 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF55048 1186 1241 1.31E-8 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.50.980 159 305 8.0E-25 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF00550 Phosphopantetheine attachment site 2055 2120 8.7E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF00550 Phosphopantetheine attachment site 469 532 2.7E-6 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM00825 Beta-ketoacyl synthase 556 980 1.5E-210 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM00826 1405 1549 3.4E-38 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF13193 AMP-binding enzyme C-terminal domain 380 454 4.3E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 554 803 2.0E-89 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.366.10 1062 1183 1.9E-68 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.40.366.10 1249 1342 1.9E-68 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Pfam PF00501 AMP-binding enzyme 18 371 2.2E-67 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 Gene3D G3DSA:3.30.300.30 366 463 3.0E-27 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 PANTHER PTHR11712:SF242 487 2124 0.0 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1793 1971 1.2E-50 T 19-04-2016 AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 SUPERFAMILY SSF51735 1654 1782 5.12E-16 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3926 3b7b57d4f0dd6237e857d1a4c8ea95f2 2129 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 716 732 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 PANTHER PTHR10566:SF94 3 59 3.3E-23 T 19-04-2016 AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 Pfam PF00144 Beta-lactamase 1 178 4.3E-23 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 PANTHER PTHR10566 3 59 3.3E-23 T 19-04-2016 AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 Gene3D G3DSA:3.40.710.10 115 177 7.4E-31 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 Gene3D G3DSA:3.40.710.10 1 78 7.4E-31 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 SUPERFAMILY SSF56601 126 175 5.7E-26 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_7353 0cb917b5aa07f5a78f48e0a4084221e9 228 SUPERFAMILY SSF56601 2 83 5.7E-26 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 Gene3D G3DSA:3.40.50.720 149 242 2.3E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SMART SM00829 10 320 2.6E-19 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SUPERFAMILY SSF50129 1 149 6.54E-34 T 19-04-2016 IPR011032 GroES-like AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 PANTHER PTHR11695:SF294 15 322 2.8E-85 T 19-04-2016 AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SUPERFAMILY SSF51735 119 246 4.19E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 SUPERFAMILY SSF51735 280 319 4.19E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 PANTHER PTHR11695 15 322 2.8E-85 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 Gene3D G3DSA:3.90.180.10 1 148 1.3E-41 T 19-04-2016 IPR011032 GroES-like AMED_7493 c30a0cacdccb0c5ba9a315d2b89fcf53 326 Pfam PF13602 Zinc-binding dehydrogenase 186 320 4.1E-29 T 19-04-2016 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 PANTHER PTHR32125 2 228 5.0E-100 T 19-04-2016 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 22 221 2.4E-68 T 19-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 PANTHER PTHR32125:SF1 2 228 5.0E-100 T 19-04-2016 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 SUPERFAMILY SSF75217 2 231 1.37E-88 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 Gene3D G3DSA:1.10.1270.20 161 245 8.3E-32 T 19-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 253 101.387 T 19-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 PIRSF PIRSF000386 1 245 3.2E-92 T 19-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 Gene3D G3DSA:3.40.1280.10 2 160 1.7E-64 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_1962 9243864632f5526980d389dc7e4a5ac4 253 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 227 9.7E-76 T 19-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 PANTHER PTHR10668:SF74 6 509 5.4E-155 T 19-04-2016 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 Pfam PF01593 Flavin containing amine oxidoreductase 17 293 3.9E-12 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 SUPERFAMILY SSF51905 466 497 6.17E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 SUPERFAMILY SSF51905 6 330 6.17E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 PANTHER PTHR10668 6 509 5.4E-155 T 19-04-2016 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 Gene3D G3DSA:3.50.50.60 222 330 1.8E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 Gene3D G3DSA:3.50.50.60 134 135 1.8E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4286 a01a4453cb8b810d408300a29fb8319e 530 Gene3D G3DSA:3.50.50.60 6 99 1.8E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 PANTHER PTHR11699 1 524 1.9E-181 T 19-04-2016 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 Pfam PF00171 Aldehyde dehydrogenase family 32 487 8.8E-137 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 Gene3D G3DSA:3.40.605.10 30 274 1.3E-69 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 SUPERFAMILY SSF53720 26 487 2.36E-139 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 PANTHER PTHR11699:SF202 1 524 1.9E-181 T 19-04-2016 AMED_4110 43e9b1b2cb1a962ed617690643e2c36c 524 Gene3D G3DSA:3.40.309.10 275 452 2.7E-64 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_8935 fd78531e3a9acbdb8190f93ef06c9b5a 148 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 35 113 1.2E-15 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_8935 fd78531e3a9acbdb8190f93ef06c9b5a 148 Gene3D G3DSA:2.30.110.10 35 90 2.3E-5 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8935 fd78531e3a9acbdb8190f93ef06c9b5a 148 Pfam PF04075 Domain of unknown function (DUF385) 33 104 5.8E-9 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_8243 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:3.30.300.30 467 573 6.2E-19 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:3.40.50.980 193 352 1.6E-25 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 PANTHER PTHR22754 31 570 1.6E-141 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:2.30.38.10 396 466 2.3E-17 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:3.40.50.980 10 119 7.4E-14 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 Gene3D G3DSA:3.40.50.980 168 192 7.4E-14 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 PANTHER PTHR22754:SF30 31 570 1.6E-141 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 SUPERFAMILY SSF56801 391 581 1.28E-86 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 SUPERFAMILY SSF56801 5 359 1.28E-86 T 19-04-2016 AMED_8243 23393224981332352a621e5f22c049bb 585 Pfam PF00501 AMP-binding enzyme 20 474 3.8E-59 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3000 fa87ba069b577c3b7489586976f2b545 293 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 41 190 1.1E-10 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_3000 fa87ba069b577c3b7489586976f2b545 293 SMART SM00382 37 201 5.0E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3000 fa87ba069b577c3b7489586976f2b545 293 Gene3D G3DSA:3.40.50.300 34 218 1.6E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3000 fa87ba069b577c3b7489586976f2b545 293 PANTHER PTHR22908 21 263 1.8E-65 T 19-04-2016 AMED_3000 fa87ba069b577c3b7489586976f2b545 293 SUPERFAMILY SSF52540 110 276 5.21E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3000 fa87ba069b577c3b7489586976f2b545 293 SUPERFAMILY SSF52540 35 83 5.21E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2669 988892b2e30baab49ce185fbb83dc876 359 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 29 37 - T 19-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 PANTHER PTHR10459:SF51 1 359 1.3E-106 T 19-04-2016 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 Gene3D G3DSA:2.40.50.140 199 334 1.7E-12 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2669 988892b2e30baab49ce185fbb83dc876 359 Gene3D G3DSA:3.30.1490.70 4 33 2.0E-12 T 19-04-2016 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 Gene3D G3DSA:3.30.1490.70 155 196 2.0E-12 T 19-04-2016 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 PANTHER PTHR10459 1 359 1.3E-106 T 19-04-2016 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 Pfam PF04679 ATP dependent DNA ligase C terminal region 218 329 6.3E-16 T 19-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 SUPERFAMILY SSF50249 199 337 8.91E-13 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2669 988892b2e30baab49ce185fbb83dc876 359 Gene3D G3DSA:3.30.470.30 34 145 4.2E-23 T 19-04-2016 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 Pfam PF01068 ATP dependent DNA ligase domain 11 196 8.7E-30 T 19-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_2669 988892b2e30baab49ce185fbb83dc876 359 SUPERFAMILY SSF56091 7 196 1.22E-39 T 19-04-2016 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 PANTHER PTHR39207 105 234 6.6E-207 T 19-04-2016 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 PANTHER PTHR39207 261 776 6.6E-207 T 19-04-2016 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 PANTHER PTHR39207 23 83 6.6E-207 T 19-04-2016 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 SUPERFAMILY SSF51445 217 778 3.68E-170 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.30.379.10 48 61 1.9E-37 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.30.379.10 97 211 1.9E-37 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Pfam PF07488 Glycosyl hydrolase family 67 middle domain 199 553 2.4E-111 T 19-04-2016 IPR011100 Glycosyl hydrolase family 67, catalytic domain GO:0005576|GO:0045493|GO:0046559 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Pfam PF07477 Glycosyl hydrolase family 67 C-terminus 555 777 5.4E-85 T 19-04-2016 IPR011099 Glycosyl hydrolase family 67, C-terminal GO:0005576|GO:0045493|GO:0046559 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Pfam PF03648 Glycosyl hydrolase family 67 N-terminus 105 195 4.8E-16 T 19-04-2016 IPR005154 Alpha glucuronidase, N-terminal GO:0045493|GO:0046559 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 SUPERFAMILY SSF55545 48 215 1.52E-26 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.90.1330.10 578 778 7.0E-77 T 19-04-2016 IPR011099 Glycosyl hydrolase family 67, C-terminal GO:0005576|GO:0045493|GO:0046559 AMED_4118 1f7a95a7cfd6bffbdc73a786d4a57efb 865 Gene3D G3DSA:3.20.20.80 216 574 2.5E-115 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 2.9E-15 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.9E-15 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 2.9E-15 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 2.9E-15 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 SUPERFAMILY SSF51905 4 312 7.66E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PANTHER PTHR22912 6 385 3.2E-84 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PANTHER PTHR22912:SF180 6 385 3.2E-84 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 2.7E-19 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.7E-19 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.7E-19 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 2.7E-19 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.7E-19 T 19-04-2016 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 SUPERFAMILY SSF55424 313 387 1.01E-17 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.50.50.60 114 157 4.9E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.50.50.60 158 315 4.5E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 Pfam PF14759 Reductase C-terminal 321 384 2.8E-8 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.30.390.30 321 384 2.9E-14 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 300 1.2E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7435 8f70607c043979e9a93e21e65d23b4f3 393 Gene3D G3DSA:3.50.50.60 5 113 7.4E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Pfam PF01820 D-ala D-ala ligase N-terminus 5 120 1.7E-29 T 19-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.30.470.20 204 336 1.8E-40 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.30.470.20 120 130 1.8E-40 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 PIRSF PIRSF039102 1 342 2.8E-107 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.40.50.20 1 119 4.2E-32 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 336 3.6E-83 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Pfam PF07478 D-ala D-ala ligase C-terminus 159 333 1.1E-59 T 19-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 279 307 - T 19-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 PANTHER PTHR23132:SF8 1 337 6.5E-102 T 19-04-2016 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 SUPERFAMILY SSF52440 3 129 2.01E-34 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Gene3D G3DSA:3.30.1490.20 131 203 4.9E-23 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 PANTHER PTHR23132 1 337 6.5E-102 T 19-04-2016 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 97 108 - T 19-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 337 35.636 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8289 8a4934c1150f7fea380e85cdeb82d163 342 SUPERFAMILY SSF56059 130 333 1.3E-52 T 19-04-2016 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 Gene3D G3DSA:3.10.20.70 4 107 8.7E-36 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 PANTHER PTHR20852:SF15 158 474 3.8E-243 T 19-04-2016 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 SUPERFAMILY SSF55931 105 473 3.53E-136 T 19-04-2016 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 473 1.4E-201 T 19-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 PANTHER PTHR20852 158 474 3.8E-243 T 19-04-2016 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 SUPERFAMILY SSF54368 4 102 3.92E-32 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 PANTHER PTHR20852:SF15 6 140 3.8E-243 T 19-04-2016 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 390 402 - T 19-04-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 Gene3D G3DSA:3.30.590.10 108 454 4.9E-133 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 Pfam PF00120 Glutamine synthetase, catalytic domain 105 471 3.0E-134 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 97 2.9E-26 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 19-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 PANTHER PTHR20852 6 140 3.8E-243 T 19-04-2016 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 261 276 - T 19-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1229 d752948fbe2e93d1cf2656897181ac34 474 SMART SM01230 104 383 2.8E-147 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_4652 828e83f98df245fa949485bc7f2d722b 241 SUPERFAMILY SSF53474 1 240 8.9E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4652 828e83f98df245fa949485bc7f2d722b 241 PANTHER PTHR17630 6 241 4.1E-77 T 19-04-2016 AMED_4652 828e83f98df245fa949485bc7f2d722b 241 Pfam PF01738 Dienelactone hydrolase family 16 240 1.4E-31 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_4652 828e83f98df245fa949485bc7f2d722b 241 Gene3D G3DSA:3.40.50.1820 3 239 5.7E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4652 828e83f98df245fa949485bc7f2d722b 241 PANTHER PTHR17630:SF51 6 241 4.1E-77 T 19-04-2016 AMED_7760 8313ab6c6acd723bc5009473d22f8222 186 PANTHER PTHR11080 3 185 2.7E-60 T 19-04-2016 AMED_7760 8313ab6c6acd723bc5009473d22f8222 186 Pfam PF00857 Isochorismatase family 5 150 1.3E-29 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7760 8313ab6c6acd723bc5009473d22f8222 186 SUPERFAMILY SSF52499 3 185 2.75E-42 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7760 8313ab6c6acd723bc5009473d22f8222 186 PANTHER PTHR11080:SF16 3 185 2.7E-60 T 19-04-2016 AMED_7760 8313ab6c6acd723bc5009473d22f8222 186 Gene3D G3DSA:3.40.50.850 2 185 1.0E-46 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_4722 d5a05a646cac1cb1fd44ddfeeea33d72 326 Pfam PF00589 Phage integrase family 137 304 3.4E-19 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_4722 d5a05a646cac1cb1fd44ddfeeea33d72 326 PANTHER PTHR30349 26 313 2.4E-33 T 19-04-2016 AMED_4722 d5a05a646cac1cb1fd44ddfeeea33d72 326 PANTHER PTHR30349:SF20 26 313 2.4E-33 T 19-04-2016 AMED_4722 d5a05a646cac1cb1fd44ddfeeea33d72 326 Gene3D G3DSA:1.10.443.10 131 312 5.4E-33 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_4722 d5a05a646cac1cb1fd44ddfeeea33d72 326 Gene3D G3DSA:1.10.150.130 22 108 5.5E-9 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_4722 d5a05a646cac1cb1fd44ddfeeea33d72 326 SUPERFAMILY SSF56349 8 313 4.12E-36 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 81 112 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 Gene3D G3DSA:1.10.10.10 153 211 8.8E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 Gene3D G3DSA:1.10.1740.10 42 149 2.4E-22 T 19-04-2016 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 PANTHER PTHR30173:SF2 31 207 6.6E-69 T 19-04-2016 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 56 209 9.9E-26 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 Pfam PF08281 Sigma-70, region 4 157 207 1.5E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 PANTHER PTHR30173 31 207 6.6E-69 T 19-04-2016 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 Pfam PF04542 Sigma-70 region 2 62 125 1.5E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 SUPERFAMILY SSF88946 37 139 1.73E-21 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6529 b759ef6c3fa4b4e321db904e2f619d7d 222 SUPERFAMILY SSF88659 149 211 4.58E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 PANTHER PTHR11895 11 485 7.3E-229 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 SUPERFAMILY SSF75304 2 486 3.4E-162 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 Pfam PF01425 Amidase 25 475 3.0E-159 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 485 2.5E-189 T 19-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 PIRSF PIRSF001221 1 455 3.3E-45 T 19-04-2016 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 Gene3D G3DSA:3.90.1300.10 3 487 2.1E-172 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 487 91.39 T 19-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 PANTHER PTHR11895:SF75 11 485 7.3E-229 T 19-04-2016 AMED_1673 ce477d8d192027288e4294c361eadc0b 505 ProSitePatterns PS00571 Amidases signature. 154 185 - T 19-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7844 e9f932e1cf984e59c61ac11886b83ffb 305 Gene3D G3DSA:1.10.287.100 224 265 1.3E-16 T 19-04-2016 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 AMED_7844 e9f932e1cf984e59c61ac11886b83ffb 305 PIRSF PIRSF028754 7 305 1.9E-94 T 19-04-2016 IPR008492 Protein of unknown function DUF774 AMED_7844 e9f932e1cf984e59c61ac11886b83ffb 305 PANTHER PTHR42301 17 304 5.6E-131 T 19-04-2016 AMED_7844 e9f932e1cf984e59c61ac11886b83ffb 305 SUPERFAMILY SSF159659 6 266 2.35E-86 T 19-04-2016 AMED_7844 e9f932e1cf984e59c61ac11886b83ffb 305 Pfam PF09754 PAC2 family 27 242 1.1E-41 T 19-04-2016 IPR019151 Proteasome assembly chaperone 2 AMED_7844 e9f932e1cf984e59c61ac11886b83ffb 305 PANTHER PTHR42301:SF1 17 304 5.6E-131 T 19-04-2016 AMED_0030 b23a1e15e630468e627dd26573089570 212 PIRSF PIRSF000190 11 212 3.7E-52 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_0030 b23a1e15e630468e627dd26573089570 212 PANTHER PTHR10851 20 212 6.6E-55 T 19-04-2016 AMED_0030 b23a1e15e630468e627dd26573089570 212 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 113 1.4E-18 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_0030 b23a1e15e630468e627dd26573089570 212 SUPERFAMILY SSF50475 13 212 6.09E-48 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0030 b23a1e15e630468e627dd26573089570 212 Gene3D G3DSA:2.30.110.10 18 212 1.1E-55 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0030 b23a1e15e630468e627dd26573089570 212 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 172 212 1.9E-11 T 19-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_0030 b23a1e15e630468e627dd26573089570 212 PANTHER PTHR10851:SF0 20 212 6.6E-55 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_0907 d8210179fadbe4da267f62a26088f95c 387 Gene3D G3DSA:3.40.50.2000 2 226 9.4E-20 T 19-04-2016 AMED_0907 d8210179fadbe4da267f62a26088f95c 387 Gene3D G3DSA:3.40.50.2000 227 369 1.1E-33 T 19-04-2016 AMED_0907 d8210179fadbe4da267f62a26088f95c 387 PANTHER PTHR11926 220 378 3.5E-21 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_0907 d8210179fadbe4da267f62a26088f95c 387 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 272 365 2.8E-7 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_0907 d8210179fadbe4da267f62a26088f95c 387 PANTHER PTHR11926:SF16 220 378 3.5E-21 T 19-04-2016 AMED_0907 d8210179fadbe4da267f62a26088f95c 387 SUPERFAMILY SSF53756 2 383 2.9E-69 T 19-04-2016 AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 5 289 17.32 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 Pfam PF01256 Carbohydrate kinase 30 282 6.1E-36 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 26 284 7.4E-42 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 PANTHER PTHR12592:SF0 26 288 2.3E-35 T 19-04-2016 AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 PANTHER PTHR12592 26 288 2.3E-35 T 19-04-2016 AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 SUPERFAMILY SSF53613 21 286 1.46E-45 T 19-04-2016 IPR029056 Ribokinase-like AMED_5884 f3375b75d4b6dc67e1a26f9dd8cc5752 289 Gene3D G3DSA:3.40.1190.20 26 287 1.7E-52 T 19-04-2016 IPR029056 Ribokinase-like AMED_0475 37dc593717ac447ab55e12803a8232a2 230 Pfam PF04542 Sigma-70 region 2 63 130 8.3E-14 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 PANTHER PTHR30173 36 227 1.4E-46 T 19-04-2016 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 SUPERFAMILY SSF88659 158 225 1.68E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 Gene3D G3DSA:1.10.10.10 164 225 1.3E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0475 37dc593717ac447ab55e12803a8232a2 230 Gene3D G3DSA:1.10.1740.10 45 144 2.5E-24 T 19-04-2016 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 59 224 3.1E-26 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 PANTHER PTHR30173:SF13 36 227 1.4E-46 T 19-04-2016 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 SUPERFAMILY SSF88946 43 143 1.53E-24 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0475 37dc593717ac447ab55e12803a8232a2 230 Pfam PF08281 Sigma-70, region 4 169 221 4.7E-14 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3354 dccc3321899a1f6661cf05082d056610 198 SUPERFAMILY SSF48498 63 195 2.45E-25 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3354 dccc3321899a1f6661cf05082d056610 198 PANTHER PTHR30055 1 112 2.3E-20 T 19-04-2016 AMED_3354 dccc3321899a1f6661cf05082d056610 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 50 6.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 SUPERFAMILY SSF46689 2 58 2.36E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 63 195 4.7E-19 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_3354 dccc3321899a1f6661cf05082d056610 198 Gene3D G3DSA:1.10.357.10 1 195 5.8E-52 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 18 41 6.0E-11 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 125 144 6.0E-11 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 69 88 6.0E-11 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 PRINTS PR00400 Tetracycline repressor protein signature 181 195 6.0E-11 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_3354 dccc3321899a1f6661cf05082d056610 198 PANTHER PTHR30055:SF36 1 112 2.3E-20 T 19-04-2016 AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 Pfam PF00005 ABC transporter 15 162 5.9E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 SMART SM00382 23 211 4.9E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 Gene3D G3DSA:3.40.50.300 3 235 3.8E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 PANTHER PTHR24220 4 236 2.1E-103 T 19-04-2016 AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 PANTHER PTHR24220:SF586 4 236 2.1E-103 T 19-04-2016 AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0070 cbb0a98c4fdbde9d66d29dbf98eea940 243 SUPERFAMILY SSF52540 11 233 4.11E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 SUPERFAMILY SSF52172 2 133 2.7E-34 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 SMART SM00421 160 217 1.6E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 SMART SM00448 3 116 1.4E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 PANTHER PTHR26402 3 227 6.0E-90 T 19-04-2016 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 Gene3D G3DSA:1.10.10.10 163 222 2.5E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 Gene3D G3DSA:3.40.50.2300 2 162 1.3E-39 T 19-04-2016 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 4.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 4.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 4.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 PANTHER PTHR26402:SF564 3 227 6.0E-90 T 19-04-2016 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 SUPERFAMILY SSF46894 155 223 2.38E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 Pfam PF00072 Response regulator receiver domain 5 117 2.1E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5492 3d695c696b3dc56ca1903f022c084edf 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 163 217 1.7E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5156 06e076f9562e98aac331179d5f42bf42 162 SMART SM00347 36 136 7.1E-20 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5156 06e076f9562e98aac331179d5f42bf42 162 ProSitePatterns PS01117 MarR-type HTH domain signature. 75 109 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_5156 06e076f9562e98aac331179d5f42bf42 162 Gene3D G3DSA:1.10.10.10 20 145 1.0E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5156 06e076f9562e98aac331179d5f42bf42 162 SUPERFAMILY SSF46785 19 145 2.77E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5156 06e076f9562e98aac331179d5f42bf42 162 PANTHER PTHR33164 21 160 6.5E-23 T 19-04-2016 AMED_5156 06e076f9562e98aac331179d5f42bf42 162 Pfam PF01047 MarR family 43 100 9.3E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:1.50.10.10 414 679 1.2E-13 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:2.80.10.50 824 959 4.3E-33 T 19-04-2016 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 PANTHER PTHR31084:SF4 51 818 1.4E-128 T 19-04-2016 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 SUPERFAMILY SSF50370 821 959 4.19E-41 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 SUPERFAMILY SSF48208 296 750 2.13E-42 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 820 898 3.7E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 905 960 1.1E-12 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 Gene3D G3DSA:2.70.98.50 47 413 6.6E-69 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 SMART SM00458 823 959 2.8E-16 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 48 280 7.3E-38 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_5599 6368996783ca2ee8d2fcbf9ce68d428a 961 PANTHER PTHR31084 51 818 1.4E-128 T 19-04-2016 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 ProSitePatterns PS00622 LuxR-type HTH domain signature. 150 177 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 SUPERFAMILY SSF88659 122 182 9.59E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 SMART SM00421 132 186 0.0056 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Gene3D G3DSA:1.10.1740.10 20 107 3.2E-16 T 19-04-2016 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 SUPERFAMILY SSF88946 10 100 2.79E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Gene3D G3DSA:1.10.10.10 125 184 1.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Pfam PF08281 Sigma-70, region 4 128 177 5.7E-16 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 PANTHER PTHR30173 1 182 8.7E-28 T 19-04-2016 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 Pfam PF04542 Sigma-70 region 2 28 94 2.7E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2462 b4a7a2b39c97bf8c732b6f1b60144d2b 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 182 1.7E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 PANTHER PTHR11654 1 194 4.3E-88 T 19-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 PANTHER PTHR11654 246 423 4.3E-88 T 19-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 SUPERFAMILY SSF103473 7 175 7.46E-13 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5439 c684fe3055b190e6e713b3183a895af4 476 PANTHER PTHR11654:SF119 1 194 4.3E-88 T 19-04-2016 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 PANTHER PTHR11654:SF119 246 423 4.3E-88 T 19-04-2016 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 1 452 1.8E-93 T 19-04-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 Pfam PF00854 POT family 85 426 3.5E-46 T 19-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 SUPERFAMILY SSF103473 197 452 3.01E-12 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5439 c684fe3055b190e6e713b3183a895af4 476 Gene3D G3DSA:1.20.1250.20 267 452 1.8E-6 T 19-04-2016 AMED_5439 c684fe3055b190e6e713b3183a895af4 476 Gene3D G3DSA:1.20.1250.20 7 172 3.9E-8 T 19-04-2016 AMED_5196 735d411520cad82bf14a918785b3f365 329 PANTHER PTHR30193:SF6 10 328 6.0E-106 T 19-04-2016 AMED_5196 735d411520cad82bf14a918785b3f365 329 SUPERFAMILY SSF161098 79 311 1.7E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5196 735d411520cad82bf14a918785b3f365 329 Gene3D G3DSA:1.10.3720.10 35 313 3.0E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5196 735d411520cad82bf14a918785b3f365 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 318 1.0E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5196 735d411520cad82bf14a918785b3f365 329 PANTHER PTHR30193 10 328 6.0E-106 T 19-04-2016 AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 SUPERFAMILY SSF52743 128 458 2.75E-62 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 Pfam PF00082 Subtilase family 148 449 1.5E-38 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 Gene3D G3DSA:3.40.50.200 125 458 1.7E-66 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 390 400 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 197 207 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 152 163 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 PANTHER PTHR10795 100 458 2.2E-41 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 PANTHER PTHR10795:SF419 100 458 2.2E-41 T 19-04-2016 AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 PRINTS PR00723 Subtilisin serine protease family (S8) signature 147 166 1.9E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 PRINTS PR00723 Subtilisin serine protease family (S8) signature 193 206 1.9E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_0847 6881619513bd60d4dde2fdc594aad1c2 459 PRINTS PR00723 Subtilisin serine protease family (S8) signature 389 405 1.9E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2878 c0bb81747503b53ca96dc7d8667ec51e 357 Pfam PF00268 Ribonucleotide reductase, small chain 37 324 6.8E-83 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMED_2878 c0bb81747503b53ca96dc7d8667ec51e 357 PANTHER PTHR23409:SF18 8 352 8.3E-147 T 19-04-2016 AMED_2878 c0bb81747503b53ca96dc7d8667ec51e 357 SUPERFAMILY SSF47240 20 328 1.5E-94 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_2878 c0bb81747503b53ca96dc7d8667ec51e 357 PANTHER PTHR23409 8 352 8.3E-147 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMED_2878 c0bb81747503b53ca96dc7d8667ec51e 357 PIRSF PIRSF000355 10 357 1.3E-127 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMED_2878 c0bb81747503b53ca96dc7d8667ec51e 357 Gene3D G3DSA:1.10.620.20 26 330 2.5E-106 T 19-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:2.40.30.110 283 356 9.1E-30 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 PIRSF PIRSF006487 1 363 7.1E-103 T 19-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 PANTHER PTHR13847 3 363 2.0E-53 T 19-04-2016 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:3.30.1360.120 141 235 2.3E-56 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:3.30.1360.120 3 52 2.3E-56 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 361 2.8E-109 T 19-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 SUPERFAMILY SSF101790 274 361 1.59E-26 T 19-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 265 356 4.1E-25 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 PANTHER PTHR13847:SF5 3 363 2.0E-53 T 19-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 362 43.801 T 19-04-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 SUPERFAMILY SSF103025 3 277 3.03E-98 T 19-04-2016 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Gene3D G3DSA:3.30.70.1400 53 140 3.7E-28 T 19-04-2016 AMED_1814 bba51a6c1ffe8391f42bd6a64cc4abf5 363 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 257 2.7E-94 T 19-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 29 415 1.7E-76 T 19-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 11 419 30.529 T 19-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 PANTHER PTHR11373:SF25 12 162 1.8E-41 T 19-04-2016 AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 Pfam PF13286 Phosphohydrolase-associated domain 326 416 1.2E-20 T 19-04-2016 IPR026875 Phosphohydrolase-associated domain AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 Pfam PF01966 HD domain 70 215 3.2E-20 T 19-04-2016 IPR006674 HD domain AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 TIGRFAM TIGR00277 HDIG: HDIG domain 71 107 1.7E-7 T 19-04-2016 IPR006675 HDIG domain AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 Gene3D G3DSA:1.10.3210.10 22 211 6.4E-61 T 19-04-2016 IPR006674 HD domain AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 SMART SM00471 66 225 3.9E-13 T 19-04-2016 IPR003607 HD/PDEase domain AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 Gene3D G3DSA:1.10.3410.10 212 346 8.2E-20 T 19-04-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 PANTHER PTHR11373 12 162 1.8E-41 T 19-04-2016 AMED_6598 39bc9d259840a160a1d7c8b659c186b7 424 SUPERFAMILY SSF109604 27 236 3.46E-55 T 19-04-2016 AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 PANTHER PTHR34298:SF2 75 278 9.3E-53 T 19-04-2016 AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 SUPERFAMILY SSF46785 104 180 9.66E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 Gene3D G3DSA:1.10.10.10 184 257 3.3E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 PANTHER PTHR34298 75 278 9.3E-53 T 19-04-2016 AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 Gene3D G3DSA:1.10.10.10 103 180 4.6E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 SUPERFAMILY SSF46785 184 257 2.78E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 106 267 1.1E-27 T 19-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMED_6007 776ada4dbd97a03e272001f769bdb03e 280 Pfam PF04079 Segregation and condensation complex subunit ScpB 108 265 4.5E-46 T 19-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMED_8679 e9756fc19343bb30d805b73c042d10f8 204 Gene3D G3DSA:3.90.550.10 19 196 1.1E-23 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8679 e9756fc19343bb30d805b73c042d10f8 204 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 20 160 4.6E-23 T 19-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8679 e9756fc19343bb30d805b73c042d10f8 204 SUPERFAMILY SSF53448 20 194 2.19E-17 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 PANTHER PTHR34847 1 555 3.2E-119 T 19-04-2016 AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 SUPERFAMILY SSF55821 363 544 9.77E-8 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 Pfam PF02543 Carbamoyltransferase N-terminus 113 322 4.3E-47 T 19-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 Pfam PF02543 Carbamoyltransferase N-terminus 2 73 2.3E-9 T 19-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 SUPERFAMILY SSF53067 1 87 2.59E-19 T 19-04-2016 AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 SUPERFAMILY SSF53067 121 326 2.59E-19 T 19-04-2016 AMED_4274 bdbd7e5a75ebd3771d23603371074910 557 Pfam PF16861 Carbamoyltransferase C-terminus 371 539 2.3E-65 T 19-04-2016 IPR031730 Carbamoyltransferase, C-terminal AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 Gene3D G3DSA:3.40.47.10 257 369 1.2E-6 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 SUPERFAMILY SSF53901 11 223 1.24E-20 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 Gene3D G3DSA:3.40.47.10 196 220 7.9E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 Gene3D G3DSA:3.40.47.10 11 118 7.9E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 PANTHER PTHR18919:SF8 1 385 1.6E-81 T 19-04-2016 AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 PANTHER PTHR18919 1 385 1.6E-81 T 19-04-2016 AMED_2555 225bc9481251aacf2de4d54f44f88b94 387 SUPERFAMILY SSF53901 247 371 2.16E-17 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 ProSitePatterns PS01120 Urease nickel ligands signature. 134 147 - T 19-04-2016 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 Hamap MF_01953 Urease subunit alpha [ureC]. 2 571 54.727 T 19-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 ProSitePatterns PS00145 Urease active site. 324 340 - T 19-04-2016 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 Gene3D G3DSA:3.20.20.140 492 569 9.8E-195 T 19-04-2016 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 Gene3D G3DSA:3.20.20.140 151 435 9.8E-195 T 19-04-2016 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 Gene3D G3DSA:2.30.40.10 72 150 2.1E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 125 1.7E-52 T 19-04-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 SUPERFAMILY SSF51556 485 571 1.79E-181 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 SUPERFAMILY SSF51556 136 438 1.79E-181 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 SUPERFAMILY SSF51338 2 183 2.26E-58 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 Pfam PF01979 Amidohydrolase family 132 455 4.6E-68 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 571 4.7E-267 T 19-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PANTHER PTHR22642 327 507 1.7E-239 T 19-04-2016 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PANTHER PTHR22642 44 303 1.7E-239 T 19-04-2016 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 302 319 4.8E-33 T 19-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 433 446 4.8E-33 T 19-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 341 357 4.8E-33 T 19-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 407 422 4.8E-33 T 19-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PANTHER PTHR22642:SF7 327 507 1.7E-239 T 19-04-2016 AMED_8448 5e7d607359bd1d77e7193ea33d8d73b9 571 PANTHER PTHR22642:SF7 44 303 1.7E-239 T 19-04-2016 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 Pfam PF01037 Lrp/AsnC ligand binding domain 92 142 6.2E-11 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 Gene3D G3DSA:1.10.10.10 10 60 9.5E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 25 36 1.7E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 9 25 1.7E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 36 55 1.7E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 PANTHER PTHR30154 1 147 1.5E-41 T 19-04-2016 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 Gene3D G3DSA:3.30.70.920 62 136 6.3E-14 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 Pfam PF13404 AsnC-type helix-turn-helix domain 9 50 7.1E-18 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 SUPERFAMILY SSF54909 71 144 3.89E-12 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 PANTHER PTHR30154:SF2 1 147 1.5E-41 T 19-04-2016 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 SUPERFAMILY SSF46785 8 68 3.81E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 SMART SM00344 9 115 2.5E-31 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_0660 ed93efe72153f29bb8a866f1442e96ff 166 ProSitePatterns PS00519 AsnC-type HTH domain signature. 27 53 - T 19-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMED_1865 6efec9ae68fb021dff15ab24ba481219 193 PANTHER PTHR19136:SF78 1 189 1.6E-35 T 19-04-2016 AMED_1865 6efec9ae68fb021dff15ab24ba481219 193 PANTHER PTHR19136 1 189 1.6E-35 T 19-04-2016 AMED_1865 6efec9ae68fb021dff15ab24ba481219 193 Gene3D G3DSA:3.90.550.10 2 190 5.0E-31 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1865 6efec9ae68fb021dff15ab24ba481219 193 Pfam PF12804 MobA-like NTP transferase domain 7 166 2.9E-35 T 19-04-2016 IPR025877 MobA-like NTP transferase AMED_1865 6efec9ae68fb021dff15ab24ba481219 193 SUPERFAMILY SSF53448 4 189 3.15E-29 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4164 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 SUPERFAMILY SSF53187 104 430 2.25E-58 T 19-04-2016 AMED_4164 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 SMART SM00631 109 415 5.6E-37 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_4164 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 Gene3D G3DSA:3.40.630.10 103 433 7.9E-68 T 19-04-2016 AMED_4164 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 PANTHER PTHR11705 102 396 5.5E-49 T 19-04-2016 AMED_4164 5fcaf2dbf1486ca1b4d5b5ae01767e7e 439 Pfam PF00246 Zinc carboxypeptidase 117 405 5.0E-47 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 137 151 8.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 167 8.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 179 8.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 Pfam PF00072 Response regulator receiver domain 4 115 2.1E-12 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 ProSitePatterns PS00622 LuxR-type HTH domain signature. 151 178 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 SMART SM00421 134 191 6.1E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 PANTHER PTHR26402 2 197 1.6E-41 T 19-04-2016 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 SUPERFAMILY SSF46894 125 197 1.94E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 SUPERFAMILY SSF52172 3 123 1.57E-16 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 PANTHER PTHR26402:SF151 2 197 1.6E-41 T 19-04-2016 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 Gene3D G3DSA:3.40.50.2300 3 135 2.5E-23 T 19-04-2016 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 SMART SM00448 2 115 5.9E-7 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 Gene3D G3DSA:1.10.10.10 136 196 1.2E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0767 1dd3ed32ce6e561d403204d8b03c23e5 198 Pfam PF00196 Bacterial regulatory proteins, luxR family 136 189 1.8E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 SUPERFAMILY SSF50447 206 302 7.27E-26 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Gene3D G3DSA:3.40.50.300 7 212 7.8E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 6.5E-178 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PANTHER PTHR23115:SF112 1 393 7.5E-198 T 19-04-2016 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Pfam PF00009 Elongation factor Tu GTP binding domain 10 202 5.2E-53 T 19-04-2016 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Pfam PF03144 Elongation factor Tu domain 2 226 295 2.3E-12 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Gene3D G3DSA:2.40.30.10 213 299 1.2E-28 T 19-04-2016 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PANTHER PTHR23115 1 393 7.5E-198 T 19-04-2016 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Pfam PF03143 Elongation factor Tu C-terminal domain 299 393 1.7E-20 T 19-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 146 1.1E-13 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.0E-23 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.0E-23 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 59 67 1.0E-23 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 132 141 1.0E-23 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.0E-23 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Gene3D G3DSA:2.40.30.10 302 394 1.1E-30 T 19-04-2016 AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 SUPERFAMILY SSF52540 7 219 2.51E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 SUPERFAMILY SSF50465 300 394 6.62E-26 T 19-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMED_4216 a2693d0f52ca4be7a5fe88e8316c7506 395 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 395 52.573 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:3.30.420.40 269 344 2.1E-6 T 19-04-2016 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 ProSitePatterns PS01125 ROK family signature. 211 238 - T 19-04-2016 IPR000600 ROK family AMED_9290 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:3.30.420.40 218 261 2.8E-21 T 19-04-2016 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:1.10.10.10 10 77 4.2E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9290 c040701b337efc8facae5344e2b63c1b 352 SUPERFAMILY SSF53067 83 344 1.03E-35 T 19-04-2016 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 PANTHER PTHR18964:SF123 60 344 2.0E-45 T 19-04-2016 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 Gene3D G3DSA:3.30.420.40 80 217 4.3E-36 T 19-04-2016 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 Pfam PF00480 ROK family 118 260 1.4E-28 T 19-04-2016 IPR000600 ROK family AMED_9290 c040701b337efc8facae5344e2b63c1b 352 SUPERFAMILY SSF46785 11 74 1.8E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9290 c040701b337efc8facae5344e2b63c1b 352 PANTHER PTHR18964 60 344 2.0E-45 T 19-04-2016 AMED_9290 c040701b337efc8facae5344e2b63c1b 352 Pfam PF12802 MarR family 16 65 1.4E-6 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 614 736 3.5E-12 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 737 1064 2.4E-75 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PANTHER PTHR22847:SF50 948 1234 1.6E-76 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 946 973 1.1E-4 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 724 746 0.096 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 755 788 4.8E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 1207 1233 0.076 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 845 872 0.037 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 881 914 3.0E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 797 828 1.1E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Pfam PF00400 WD domain, G-beta repeat 1115 1147 2.1E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF50978 724 1019 1.65E-65 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PRINTS PR00320 G protein beta WD-40 repeat signature 775 789 5.6E-6 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PRINTS PR00320 G protein beta WD-40 repeat signature 859 873 5.6E-6 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PRINTS PR00320 G protein beta WD-40 repeat signature 960 974 5.6E-6 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 859 873 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 960 974 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:2.130.10.10 1086 1234 6.1E-27 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF69322 615 700 1.29E-9 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 901 915 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PANTHER PTHR22847:SF50 678 930 1.6E-76 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PANTHER PTHR22847 678 930 1.6E-76 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 PANTHER PTHR22847 948 1234 1.6E-76 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 1196 1234 2.5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 711 746 2.2 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 917 973 8.6E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 1108 1147 1.3E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 976 1015 0.33 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 661 698 310.0 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 791 830 2.8E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 749 788 9.5E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 833 872 0.0086 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 612 656 470.0 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 1154 1193 0.0026 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SMART SM00320 875 914 1.6E-6 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 Gene3D G3DSA:3.40.50.300 101 175 1.8E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF101908 956 1246 1.83E-45 T 19-04-2016 AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 775 789 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 SUPERFAMILY SSF52540 102 342 9.09E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2915 b568efcf4b7520fa4d3818df3bb9fb6b 1269 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1134 1148 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 126 138 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 3.7E-43 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 PANTHER PTHR10909:SF204 7 378 1.8E-141 T 19-04-2016 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 SUPERFAMILY SSF47203 229 378 7.41E-43 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 PANTHER PTHR10909 7 378 1.8E-141 T 19-04-2016 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 120 2.7E-26 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 SUPERFAMILY SSF56645 3 239 1.13E-74 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 Gene3D G3DSA:1.10.540.10 7 122 7.2E-32 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 217 1.0E-23 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 Gene3D G3DSA:1.20.140.10 219 378 1.9E-53 T 19-04-2016 AMED_2886 1220b799d3c8a85d6126e83c4e95c965 382 Gene3D G3DSA:2.40.110.10 124 218 7.9E-38 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 4157 4400 8.15E-61 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5581 5592 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF08241 Methyltransferase domain 2136 2238 8.6E-11 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 1360 1605 6.23E-67 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4929 4944 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 3830 3897 6.51E-144 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 2977 3453 6.51E-144 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:2.30.38.10 5754 5830 9.9E-28 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:2.30.38.10 4719 4798 1.8E-29 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:2.30.38.10 525 601 6.4E-27 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:2.30.38.10 1937 2015 1.6E-26 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:2.30.38.10 3321 3397 1.6E-27 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 361 372 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00550 Phosphopantetheine attachment site 4906 4970 2.5E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00550 Phosphopantetheine attachment site 5942 6004 1.1E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00550 Phosphopantetheine attachment site 1098 1161 4.4E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00550 Phosphopantetheine attachment site 2474 2536 6.4E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00550 Phosphopantetheine attachment site 3892 3955 7.4E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 4396 4918 6.15E-136 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF47336 1089 1162 1.44E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF08242 Methyltransferase domain 3518 3615 8.6E-11 T 19-04-2016 IPR013217 Methyltransferase type 12 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF08242 Methyltransferase domain 720 818 6.1E-9 T 19-04-2016 IPR013217 Methyltransferase type 12 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF47336 2467 2571 3.14E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 PANTHER PTHR24095 2414 2630 0.0 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 PANTHER PTHR24095 3951 5918 0.0 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 PANTHER PTHR24095 1802 2089 0.0 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF13745 HxxPF-repeated domain 1493 1582 9.4E-34 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF13745 HxxPF-repeated domain 4290 4382 2.4E-31 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF13745 HxxPF-repeated domain 2874 2961 3.2E-30 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF13745 HxxPF-repeated domain 5305 5394 1.6E-26 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4561 4572 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF53335 682 879 2.81E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1771 1782 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1120 1135 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 2410 2486 2.62E-164 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 1595 2079 2.62E-164 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SMART SM00823 Phosphopantetheine attachment site 4905 4974 1.4E-10 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SMART SM00823 Phosphopantetheine attachment site 3890 3959 4.2E-8 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SMART SM00823 Phosphopantetheine attachment site 2473 2542 4.5E-7 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SMART SM00823 Phosphopantetheine attachment site 5941 6010 8.7E-5 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SMART SM00823 Phosphopantetheine attachment site 1096 1165 7.0E-16 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2497 2512 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 PANTHER PTHR24095:SF137 2414 2630 0.0 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 PANTHER PTHR24095:SF137 3951 5918 0.0 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 PANTHER PTHR24095:SF137 1802 2089 0.0 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3914 3929 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:1.10.1200.10 5945 6006 1.1E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:1.10.1200.10 4909 4972 6.5E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:1.10.1200.10 2478 2543 1.9E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:1.10.1200.10 3895 3959 1.0E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:1.10.1200.10 1100 1164 2.8E-28 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00501 AMP-binding enzyme 3017 3408 1.9E-92 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00501 AMP-binding enzyme 4433 4808 2.6E-82 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00501 AMP-binding enzyme 5452 5840 1.1E-84 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00501 AMP-binding enzyme 1636 2025 2.8E-99 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00501 AMP-binding enzyme 224 612 1.4E-90 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 4803 4908 3.6E-30 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 2415 2477 3.2E-38 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 1038 1099 1.9E-32 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 3403 3455 2.4E-36 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 607 659 1.9E-32 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 3832 3894 2.4E-36 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 2020 2077 3.2E-38 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.30.300.30 5835 5944 2.3E-37 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 4983 5184 1.11E-47 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 4454 4832 6.5E-110 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 245 636 1.7E-130 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3038 3432 3.5E-129 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5470 5864 2.2E-115 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1657 2049 1.7E-135 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF47336 4899 4970 4.71E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF47336 3883 3955 6.54E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 5407 5954 5.23E-142 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 5173 5432 1.67E-57 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 1780 1936 2.1E-46 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 4570 4715 3.9E-24 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF53335 3480 3675 1.05E-23 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 2741 2981 2.22E-63 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 13 212 7.23E-23 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 1033 1109 1.83E-155 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF56801 183 661 1.83E-155 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00668 Condensation domain 3975 4267 2.6E-66 T 19-04-2016 IPR001242 Condensation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00668 Condensation domain 1183 1470 6.4E-65 T 19-04-2016 IPR001242 Condensation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00668 Condensation domain 2558 2851 8.7E-63 T 19-04-2016 IPR001242 Condensation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF00668 Condensation domain 4987 5282 3.0E-57 T 19-04-2016 IPR001242 Condensation domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF47336 5934 6004 7.85E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF13193 AMP-binding enzyme C-terminal domain 4816 4882 1.5E-7 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Pfam PF13193 AMP-binding enzyme C-terminal domain 5848 5918 2.2E-12 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3156 3167 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 2560 2728 4.0E-48 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 384 524 2.9E-34 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 3179 3320 1.2E-32 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 5603 5753 3.3E-28 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 3979 4149 2.22E-50 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 218 383 1.6E-49 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 5444 5602 3.1E-43 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 1631 1779 1.1E-48 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 4427 4569 5.0E-45 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.980 3011 3178 7.1E-50 T 19-04-2016 AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.150 3478 3641 1.3E-21 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.150 679 844 9.8E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 Gene3D G3DSA:3.40.50.150 2084 2258 3.1E-23 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF53335 2096 2242 6.96E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5034 7d12b32faee075399ed1ea9cda3c54b5 6011 SUPERFAMILY SSF52777 1185 1353 2.45E-50 T 19-04-2016 AMED_3207 17f57552288f8cd09ae7b9ef6d21726d 117 PANTHER PTHR33495 1 106 4.5E-13 T 19-04-2016 AMED_3207 17f57552288f8cd09ae7b9ef6d21726d 117 SUPERFAMILY SSF52091 2 99 6.08E-14 T 19-04-2016 IPR002645 STAS domain AMED_3207 17f57552288f8cd09ae7b9ef6d21726d 117 PANTHER PTHR33495:SF2 1 106 4.5E-13 T 19-04-2016 AMED_3207 17f57552288f8cd09ae7b9ef6d21726d 117 Gene3D G3DSA:3.30.750.24 3 102 4.7E-17 T 19-04-2016 IPR002645 STAS domain AMED_3207 17f57552288f8cd09ae7b9ef6d21726d 117 Pfam PF13466 STAS domain 3 86 2.8E-8 T 19-04-2016 IPR002645 STAS domain AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 4 136 5.7E-13 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 SUPERFAMILY SSF49303 193 291 2.88E-13 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 85 100 3.8E-5 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 481 496 3.8E-5 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 403 418 3.8E-5 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PRINTS PR00132 Glycosyl hydrolase family 2 signature 339 357 3.8E-5 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 303 491 2.5E-8 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 SUPERFAMILY SSF51445 302 592 4.02E-18 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF16355 Domain of unknown function (DUF4982) 615 674 1.1E-8 T 19-04-2016 IPR032311 Domain of unknown function DUF4982 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:3.20.20.80 291 596 9.6E-21 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PANTHER PTHR10066:SF46 2 538 1.7E-94 T 19-04-2016 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PANTHER PTHR10066:SF46 561 666 1.7E-94 T 19-04-2016 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.40.1560 600 690 2.1E-11 T 19-04-2016 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.40.320 158 290 1.6E-15 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PANTHER PTHR10066 2 538 1.7E-94 T 19-04-2016 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 PANTHER PTHR10066 561 666 1.7E-94 T 19-04-2016 AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 SUPERFAMILY SSF49785 2 167 2.55E-36 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Gene3D G3DSA:2.60.120.260 3 157 8.9E-37 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7827 8fbe2b6d327fc87d2f4237699a6f0fff 805 Pfam PF00703 Glycosyl hydrolases family 2 196 291 5.9E-11 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 41 53 8.8E-11 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 28 41 8.8E-11 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 15 28 8.8E-11 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 53 66 8.8E-11 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 PRINTS PR00944 Copper ion binding protein signature 3 15 8.8E-11 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 Pfam PF00403 Heavy-metal-associated domain 5 64 1.0E-17 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 5 66 4.3E-18 T 19-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 Gene3D G3DSA:3.30.70.100 3 66 3.2E-23 T 19-04-2016 AMED_6898 6ca95ce01fc90e2fac97b46477689e57 68 SUPERFAMILY SSF55008 1 67 1.2E-19 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_0622 b582df0b93b7ccbe04db996142277555 260 PANTHER PTHR11786 2 250 2.5E-33 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0622 b582df0b93b7ccbe04db996142277555 260 PRINTS PR01543 Arylamine N-acetyltransferase signature 105 130 5.4E-6 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0622 b582df0b93b7ccbe04db996142277555 260 PRINTS PR01543 Arylamine N-acetyltransferase signature 22 45 5.4E-6 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0622 b582df0b93b7ccbe04db996142277555 260 SUPERFAMILY SSF54001 2 255 1.5E-60 T 19-04-2016 AMED_0622 b582df0b93b7ccbe04db996142277555 260 Gene3D G3DSA:3.30.2140.10 4 169 1.1E-32 T 19-04-2016 AMED_0622 b582df0b93b7ccbe04db996142277555 260 Pfam PF00797 N-acetyltransferase 22 252 1.3E-63 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_9304 63a792b456265e0409aebe445f2afad4 469 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 32 467 2.8E-159 T 19-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMED_9304 63a792b456265e0409aebe445f2afad4 469 SUPERFAMILY SSF52540 210 453 6.07E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9304 63a792b456265e0409aebe445f2afad4 469 Pfam PF03796 DnaB-like helicase C terminal domain 211 464 1.3E-100 T 19-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 AMED_9304 63a792b456265e0409aebe445f2afad4 469 PANTHER PTHR30153 16 466 3.8E-188 T 19-04-2016 AMED_9304 63a792b456265e0409aebe445f2afad4 469 Gene3D G3DSA:3.40.50.300 195 467 4.4E-117 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9304 63a792b456265e0409aebe445f2afad4 469 Pfam PF00772 DnaB-like helicase N terminal domain 31 133 1.1E-34 T 19-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMED_9304 63a792b456265e0409aebe445f2afad4 469 SMART SM00382 228 425 1.6E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9304 63a792b456265e0409aebe445f2afad4 469 Gene3D G3DSA:1.10.860.10 32 134 3.8E-40 T 19-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMED_9304 63a792b456265e0409aebe445f2afad4 469 SUPERFAMILY SSF48024 30 141 1.03E-38 T 19-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMED_0391 548e61890bb631003183e73ff790c876 404 SUPERFAMILY SSF51905 2 186 5.3E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0391 548e61890bb631003183e73ff790c876 404 Gene3D G3DSA:3.30.390.30 315 400 1.3E-26 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 226 242 8.5E-25 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 273 8.5E-25 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 8.5E-25 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 8.5E-25 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 8.5E-25 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 SUPERFAMILY SSF55424 308 401 7.55E-26 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 273 3.2E-13 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.2E-13 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 227 241 3.2E-13 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 169 3.2E-13 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 SUPERFAMILY SSF51905 144 304 3.35E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0391 548e61890bb631003183e73ff790c876 404 PANTHER PTHR22912 2 377 1.1E-107 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 Gene3D G3DSA:3.50.50.60 2 106 6.4E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0391 548e61890bb631003183e73ff790c876 404 PANTHER PTHR22912:SF180 2 377 1.1E-107 T 19-04-2016 AMED_0391 548e61890bb631003183e73ff790c876 404 Pfam PF14759 Reductase C-terminal 315 399 4.5E-25 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_0391 548e61890bb631003183e73ff790c876 404 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 296 1.2E-60 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0391 548e61890bb631003183e73ff790c876 404 Gene3D G3DSA:3.50.50.60 107 305 5.1E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5762 aa3fed189b3276121e834f47e69e4754 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 9.7E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 9.7E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 9.7E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 9.7E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 9.7E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 SUPERFAMILY SSF51735 3 238 2.09E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5762 aa3fed189b3276121e834f47e69e4754 278 Gene3D G3DSA:3.40.50.720 4 248 3.1E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PANTHER PTHR24322:SF57 149 180 1.1E-45 T 19-04-2016 AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PANTHER PTHR24322:SF57 8 133 1.1E-45 T 19-04-2016 AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PANTHER PTHR24322 149 180 1.1E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PANTHER PTHR24322 8 133 1.1E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 Pfam PF00106 short chain dehydrogenase 7 190 2.0E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 2.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5762 aa3fed189b3276121e834f47e69e4754 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 2.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 PANTHER PTHR33993 11 240 1.1E-33 T 19-04-2016 AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 SUPERFAMILY SSF54593 9 120 6.33E-18 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 SUPERFAMILY SSF54593 133 237 1.09E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 240 302 8.0E-16 T 19-04-2016 AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 Gene3D G3DSA:3.10.180.10 136 235 1.6E-9 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 Gene3D G3DSA:3.10.180.10 8 120 1.9E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3653 c886b94a7ee8551b02a18aab3b7c86ae 381 PANTHER PTHR33993:SF3 11 240 1.1E-33 T 19-04-2016 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:2.40.30.10 237 334 1.6E-29 T 19-04-2016 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:3.30.70.240 434 513 6.0E-28 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 SMART SM00838 427 515 0.0074 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF54980 430 544 6.71E-27 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:3.40.50.300 18 236 1.1E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF54980 333 419 1.01E-10 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PANTHER PTHR23115 215 622 9.5E-246 T 19-04-2016 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Pfam PF00679 Elongation factor G C-terminus 428 512 5.5E-20 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:3.30.70.870 335 433 1.3E-32 T 19-04-2016 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PANTHER PTHR23115 4 196 9.5E-246 T 19-04-2016 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 21 629 7.0E-271 T 19-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PANTHER PTHR23115:SF14 215 622 9.5E-246 T 19-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PANTHER PTHR23115:SF14 4 196 9.5E-246 T 19-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 22 167 3.1E-23 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Gene3D G3DSA:2.40.50.250 514 608 2.9E-35 T 19-04-2016 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Pfam PF03144 Elongation factor Tu domain 2 250 320 1.9E-11 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF52540 18 236 3.81E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 23 36 1.0E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 107 118 1.0E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 91 101 1.0E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 67 75 1.0E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 PRINTS PR00315 GTP-binding elongation factor signature 143 152 1.0E-15 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 SUPERFAMILY SSF50447 183 331 1.02E-30 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_8030 64b9e5240f6127f9b08f97e98497e92e 641 Pfam PF00009 Elongation factor Tu GTP binding domain 21 226 1.1E-52 T 19-04-2016 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 Gene3D G3DSA:3.90.100.10 421 499 3.1E-23 T 19-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 23 316 1.2E-50 T 19-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 423 486 2.7E-11 T 19-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 PANTHER PTHR11751 23 471 2.5E-70 T 19-04-2016 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 PANTHER PTHR11751:SF435 23 471 2.5E-70 T 19-04-2016 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 Gene3D G3DSA:3.40.640.10 23 299 1.2E-78 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 SUPERFAMILY SSF55904 355 499 9.02E-31 T 19-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 SUPERFAMILY SSF53383 23 397 3.13E-69 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4303 882a81fd3794b415fe2deb6d52a50c88 502 Gene3D G3DSA:3.90.1150.10 341 399 1.8E-5 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:3.40.50.300 273 432 7.7E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 95 7.7E-11 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Pfam PF13191 AAA ATPase domain 277 425 3.0E-19 T 19-04-2016 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.10.10.10 12 96 1.0E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Pfam PF03704 Bacterial transcriptional activator domain 102 246 1.1E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.25.40.10 1007 1048 1.8E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.25.40.10 718 965 1.8E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 978 1040 1.75E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 108 142 1.75E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 818 854 1.75E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 687 751 1.75E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF46894 5 95 3.12E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF52540 272 500 3.52E-14 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.25.40.10 185 229 2.1E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 Gene3D G3DSA:1.25.40.10 107 144 2.1E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SMART SM00862 15 95 4.0E-17 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 PANTHER PTHR35807 1 336 4.5E-55 T 19-04-2016 AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SMART SM01043 102 246 2.5E-48 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8118 ad52dba02a567d6c96e864cf62b60a3c 1077 SUPERFAMILY SSF48452 98 267 2.11E-33 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 SMART SM00823 Phosphopantetheine attachment site 533 602 0.0064 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:3.40.50.980 12 167 1.7E-46 T 19-04-2016 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Pfam PF13193 AMP-binding enzyme C-terminal domain 434 509 1.6E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Pfam PF00550 Phosphopantetheine attachment site 535 595 1.5E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 SUPERFAMILY SSF47336 530 596 4.32E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:1.10.1200.10 536 601 9.4E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 PANTHER PTHR24095:SF137 7 612 7.7E-197 T 19-04-2016 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 ProSitePatterns PS00012 Phosphopantetheine attachment site. 557 572 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:3.40.50.980 168 322 8.2E-35 T 19-04-2016 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:3.30.300.30 421 535 1.7E-37 T 19-04-2016 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 SUPERFAMILY SSF56801 10 545 2.35E-146 T 19-04-2016 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 39 450 1.5E-120 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Pfam PF00501 AMP-binding enzyme 17 426 8.2E-88 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 PANTHER PTHR24095 7 612 7.7E-197 T 19-04-2016 AMED_4770 2b44d00cf2fc7b0c40a67d7dcfe785bd 612 Gene3D G3DSA:2.30.38.10 338 413 3.7E-21 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 306 6.1E-121 T 19-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 AMED_9353 5af09499589a290cceedabff6da50568 330 PANTHER PTHR22912 3 308 6.2E-153 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 Gene3D G3DSA:3.50.50.60 230 300 2.5E-5 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 255 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 269 287 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 6.5E-76 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 Gene3D G3DSA:3.50.50.60 5 119 2.7E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 SUPERFAMILY SSF51905 7 306 8.64E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 295 2.9E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 3.9E-34 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 3.9E-34 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 3.9E-34 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.9E-34 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 3.9E-34 T 19-04-2016 AMED_9353 5af09499589a290cceedabff6da50568 330 Gene3D G3DSA:3.50.50.60 120 229 3.9E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9353 5af09499589a290cceedabff6da50568 330 PANTHER PTHR22912:SF48 3 308 6.2E-153 T 19-04-2016 AMED_7189 1089a516b261e131d433bb4884d1112e 141 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 91 5.1E-15 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_7189 1089a516b261e131d433bb4884d1112e 141 PANTHER PTHR35176 4 139 2.8E-13 T 19-04-2016 AMED_7189 1089a516b261e131d433bb4884d1112e 141 Gene3D G3DSA:2.30.110.10 5 130 1.3E-18 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7189 1089a516b261e131d433bb4884d1112e 141 SUPERFAMILY SSF50475 6 131 8.04E-24 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7189 1089a516b261e131d433bb4884d1112e 141 PANTHER PTHR35176:SF3 4 139 2.8E-13 T 19-04-2016 AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 Pfam PF00082 Subtilase family 209 476 7.4E-55 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 251 261 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 429 439 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 SUPERFAMILY SSF52743 190 485 1.1E-80 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 PANTHER PTHR10795 177 485 3.9E-71 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 Gene3D G3DSA:3.40.50.200 193 485 2.0E-84 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 PRINTS PR00723 Subtilisin serine protease family (S8) signature 247 260 1.6E-21 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 PRINTS PR00723 Subtilisin serine protease family (S8) signature 209 228 1.6E-21 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 PRINTS PR00723 Subtilisin serine protease family (S8) signature 428 444 1.6E-21 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 214 225 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_2940 4840afdf8c30b9951725b3cf69c71a0e 1096 PANTHER PTHR10795:SF419 177 485 3.9E-71 T 19-04-2016 AMED_4309 51115894c26dc3e79164d57f9b1447b2 339 SUPERFAMILY SSF53850 58 288 4.73E-27 T 19-04-2016 AMED_4309 51115894c26dc3e79164d57f9b1447b2 339 PANTHER PTHR30024 67 270 1.4E-18 T 19-04-2016 AMED_4309 51115894c26dc3e79164d57f9b1447b2 339 Pfam PF09084 NMT1/THI5 like 50 257 2.2E-18 T 19-04-2016 IPR015168 SsuA/THI5-like AMED_4309 51115894c26dc3e79164d57f9b1447b2 339 Gene3D G3DSA:3.40.190.10 117 242 6.7E-18 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 PANTHER PTHR23501:SF73 15 418 3.2E-144 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 Gene3D G3DSA:1.20.1250.20 13 193 2.5E-32 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 Gene3D G3DSA:1.20.1250.20 265 450 7.8E-16 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 420 3.4E-76 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 PANTHER PTHR23501 15 418 3.2E-144 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 SUPERFAMILY SSF103473 12 201 5.76E-62 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 SUPERFAMILY SSF103473 249 450 5.76E-62 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 Pfam PF07690 Major Facilitator Superfamily 18 410 5.1E-49 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 107 127 1.0E-5 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 1.0E-5 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 161 1.0E-5 T 19-04-2016 AMED_1400 3aa99900a27c1ce01fb43c5866b81576 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 1.0E-5 T 19-04-2016 AMED_5623 b4fd316e0f8027941c2eaa4c96b7470d 224 Gene3D G3DSA:3.40.50.720 3 184 3.5E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5623 b4fd316e0f8027941c2eaa4c96b7470d 224 Pfam PF00106 short chain dehydrogenase 3 182 8.4E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5623 b4fd316e0f8027941c2eaa4c96b7470d 224 PANTHER PTHR24322 6 82 8.5E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5623 b4fd316e0f8027941c2eaa4c96b7470d 224 SUPERFAMILY SSF51735 3 208 5.68E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 Gene3D G3DSA:3.40.109.10 243 323 3.4E-25 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 Gene3D G3DSA:3.40.109.10 7 69 3.4E-25 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 Gene3D G3DSA:3.40.109.10 140 210 3.4E-25 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 SUPERFAMILY SSF55469 226 323 9.17E-16 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 SUPERFAMILY SSF55469 7 67 9.17E-16 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 PANTHER PTHR23026:SF111 7 37 6.1E-28 T 19-04-2016 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 PANTHER PTHR23026:SF111 143 332 6.1E-28 T 19-04-2016 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 PANTHER PTHR23026 7 37 6.1E-28 T 19-04-2016 AMED_5457 7f5d0d3308dd4024a0a4d906065ad1f0 336 PANTHER PTHR23026 143 332 6.1E-28 T 19-04-2016 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 SMART SM00962 100 298 1.8E-105 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 SMART SM00382 99 303 7.9E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Pfam PF02978 Signal peptide binding domain 330 427 4.8E-29 T 19-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 483 33.344 T 19-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Gene3D G3DSA:3.40.50.300 93 299 1.3E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Gene3D G3DSA:1.20.120.140 2 89 9.3E-33 T 19-04-2016 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 PANTHER PTHR11564:SF7 1 434 2.9E-239 T 19-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 428 2.1E-177 T 19-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 SUPERFAMILY SSF52540 42 356 2.43E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 SMART SM00963 1 86 6.6E-31 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 271 284 - T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Gene3D G3DSA:1.10.260.30 329 431 7.0E-36 T 19-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 6.1E-20 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 Pfam PF00448 SRP54-type protein, GTPase domain 100 298 1.8E-69 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 PANTHER PTHR11564 1 434 2.9E-239 T 19-04-2016 AMED_1954 3fcbef2767032c0389f81b527c745f7b 512 SUPERFAMILY SSF47446 329 430 1.37E-32 T 19-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PANTHER PTHR24322 20 146 4.0E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PANTHER PTHR24322 162 193 4.0E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 Pfam PF00106 short chain dehydrogenase 18 204 1.4E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.1E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.1E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.1E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 1.1E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.1E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 196 2.8E-4 T 19-04-2016 AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 6.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 6.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 6.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 Gene3D G3DSA:3.40.50.720 15 247 6.8E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 SUPERFAMILY SSF51735 12 281 4.43E-64 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4493 3fc775a847486c3a56dbec14c14b01cc 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00501 AMP-binding enzyme 1424 1813 1.3E-95 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.50.980 1419 1584 1.5E-47 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 529 815 3.7E-103 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF55048 651 712 1.57E-10 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 173 189 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF53901 7 126 1.42E-84 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF53901 156 382 1.42E-84 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF53901 414 435 1.42E-84 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF47336 889 985 2.36E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.366.10 711 817 1.2E-73 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.366.10 522 647 1.2E-73 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.47.10 12 272 9.1E-73 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1562 1573 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00698 Acyl transferase domain 528 802 2.4E-59 T 19-04-2016 IPR014043 Acyl transferase AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF56801 1383 1934 3.01E-155 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00668 Condensation domain 972 1257 6.4E-67 T 19-04-2016 IPR001242 Condensation domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 PANTHER PTHR24095:SF137 892 1973 0.0 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF103473 2258 2655 2.62E-42 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.50.980 1585 1724 2.2E-38 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.10.1200.10 1925 1984 2.1E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.10.1200.10 889 956 1.1E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.30.300.30 1809 1924 3.2E-40 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SMART SM00825 Beta-ketoacyl synthase 12 439 2.0E-174 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 389 497 3.2E-17 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:2.30.38.10 1725 1803 5.3E-26 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52777 1146 1386 2.67E-65 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF53474 1948 2242 2.06E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 269 386 2.1E-39 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF13193 AMP-binding enzyme C-terminal domain 1821 1896 5.2E-12 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF13745 HxxPF-repeated domain 1279 1368 1.2E-28 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SMART SM00823 Phosphopantetheine attachment site 1921 1986 0.0077 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SMART SM00823 Phosphopantetheine attachment site 889 958 6.6E-11 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.47.10 273 441 5.1E-58 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1444 1837 3.2E-130 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52777 971 1158 3.89E-47 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SMART SM00824 Thioesterase 2010 2158 0.0077 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.30.70.250 651 703 1.0E-4 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00550 Phosphopantetheine attachment site 891 952 1.1E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00550 Phosphopantetheine attachment site 1924 1982 2.5E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.20.1250.20 2258 2441 1.0E-20 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:1.20.1250.20 2454 2654 2.3E-6 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF12697 Alpha/beta hydrolase family 2017 2239 1.0E-16 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 260 4.1E-67 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_3681 e283319a57012c495f87a9f68865cd69 2684 ProSitePatterns PS00012 Phosphopantetheine attachment site. 913 928 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3681 e283319a57012c495f87a9f68865cd69 2684 PANTHER PTHR24095 892 1973 0.0 T 19-04-2016 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Gene3D G3DSA:3.40.50.1820 2016 2242 9.1E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52151 526 653 3.66E-66 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 SUPERFAMILY SSF52151 713 803 3.66E-66 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3681 e283319a57012c495f87a9f68865cd69 2684 Pfam PF07690 Major Facilitator Superfamily 2263 2600 3.1E-27 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 PRINTS PR01042 Aspartyl-tRNA synthetase signature 176 188 3.0E-13 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 PRINTS PR01042 Aspartyl-tRNA synthetase signature 192 205 3.0E-13 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 PRINTS PR01042 Aspartyl-tRNA synthetase signature 360 374 3.0E-13 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 Pfam PF01336 OB-fold nucleic acid binding domain 19 85 1.4E-8 T 19-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 Pfam PF00152 tRNA synthetases class II (D, K and N) 115 399 1.7E-62 T 19-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 Gene3D G3DSA:3.30.930.10 109 405 2.0E-82 T 19-04-2016 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 SUPERFAMILY SSF50249 10 95 4.0E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 Gene3D G3DSA:2.40.50.140 8 94 3.6E-20 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 SUPERFAMILY SSF55681 98 404 5.6E-72 T 19-04-2016 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 PANTHER PTHR22594:SF10 12 405 8.5E-125 T 19-04-2016 IPR004523 Aspartyl-tRNA synthetase, archaeal-type GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422 AMED_1332 7ae1e86f5b124e279b0cc3b8bc475b91 405 PANTHER PTHR22594 12 405 8.5E-125 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 Pfam PF14508 Glycosyl-hydrolase 97 N-terminal 52 276 4.9E-41 T 19-04-2016 IPR029486 Glycosyl-hydrolase 97, N-terminal domain AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 PANTHER PTHR35803:SF2 52 612 2.1E-139 T 19-04-2016 AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 Pfam PF10566 Glycoside hydrolase 97 281 515 8.3E-59 T 19-04-2016 IPR019563 Glycosyl-hydrolase 97, catalytic domain AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 Gene3D G3DSA:3.20.20.70 305 415 4.8E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 PANTHER PTHR35803 52 612 2.1E-139 T 19-04-2016 AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 Pfam PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation 517 607 3.8E-22 T 19-04-2016 IPR029483 Glycosyl-hydrolase 97, C-terminal oligomerisation domain AMED_0854 0de1d89ea78b15fcea0444a3be8cb840 618 SUPERFAMILY SSF51445 281 479 1.33E-15 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 SMART SM01086 319 413 4.4E-32 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Pfam PF07724 AAA domain (Cdc48 subfamily) 116 312 2.0E-50 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 SUPERFAMILY SSF52540 59 407 1.19E-73 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Pfam PF06689 ClpX C4-type zinc finger 11 48 9.0E-21 T 19-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 PANTHER PTHR11262 5 416 3.5E-245 T 19-04-2016 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 397 6.8E-16 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Gene3D G3DSA:3.40.50.300 296 313 1.3E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Gene3D G3DSA:3.40.50.300 64 257 1.3E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 9 413 1.2E-195 T 19-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 SMART SM00994 10 49 1.1E-23 T 19-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 SMART SM00382 115 268 4.4E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Gene3D G3DSA:1.10.8.60 319 417 2.1E-37 T 19-04-2016 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 SUPERFAMILY SSF57716 11 46 1.38E-11 T 19-04-2016 AMED_6739 c1277a333f789760df1aa72e9b1fa4c3 431 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 417 52.19 T 19-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 PANTHER PTHR13832 1 255 1.6E-65 T 19-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 SUPERFAMILY SSF81606 4 234 1.7E-64 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 Gene3D G3DSA:3.60.40.10 3 235 2.3E-68 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 PANTHER PTHR13832:SF226 1 255 1.6E-65 T 19-04-2016 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 Pfam PF13672 Protein phosphatase 2C 18 199 1.5E-12 T 19-04-2016 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 SMART SM00332 2 233 3.3E-33 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_0055 95bcdfe19858fe8ad94a10c8864b0cd3 465 SMART SM00331 11 235 9.3E-37 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6298 5a703634cfdaf922d185258bf65ee84c 534 Pfam PF00092 von Willebrand factor type A domain 339 523 2.7E-10 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_6298 5a703634cfdaf922d185258bf65ee84c 534 SMART SM00327 334 522 5.8E-13 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_6298 5a703634cfdaf922d185258bf65ee84c 534 Gene3D G3DSA:3.40.50.410 339 524 1.3E-13 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_6298 5a703634cfdaf922d185258bf65ee84c 534 Pfam PF13531 Bacterial extracellular solute-binding protein 37 289 3.7E-19 T 19-04-2016 AMED_6298 5a703634cfdaf922d185258bf65ee84c 534 SUPERFAMILY SSF53300 336 525 4.15E-20 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 PIRSF PIRSF000728 18 299 1.5E-101 T 19-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 TIGRFAM TIGR00761 argB: acetylglutamate kinase 37 275 2.8E-79 T 19-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 Pfam PF00696 Amino acid kinase family 37 277 4.9E-43 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 PRINTS PR00474 Glutamate 5-kinase family signature 199 226 3.7E-7 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 PRINTS PR00474 Glutamate 5-kinase family signature 250 270 3.7E-7 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 PANTHER PTHR23342 1 298 1.8E-111 T 19-04-2016 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 SUPERFAMILY SSF53633 15 301 2.62E-86 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 Gene3D G3DSA:3.40.1160.10 34 298 3.7E-99 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_6042 bbde15d69763e31a501a2ca3716ff862 305 Hamap MF_00082_B Acetylglutamate kinase [argB]. 34 300 34.232 T 19-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF00501 AMP-binding enzyme 29 426 5.5E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF56801 18 543 7.2E-136 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF47336 525 591 1.57E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 SMART SM00823 Phosphopantetheine attachment site 530 597 8.3E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:2.30.38.10 340 417 3.3E-28 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.40.50.980 22 193 2.6E-44 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.30.300.30 421 518 6.0E-31 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF52777 797 1023 3.45E-47 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 PANTHER PTHR24095:SF173 16 1022 5.4E-206 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 SUPERFAMILY SSF52777 623 811 4.15E-35 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:3.40.50.980 194 339 6.6E-25 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF00668 Condensation domain 627 907 1.9E-44 T 19-04-2016 IPR001242 Condensation domain AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 51 451 1.5E-117 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF00550 Phosphopantetheine attachment site 532 592 5.5E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Gene3D G3DSA:1.10.1200.10 522 596 1.1E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 PANTHER PTHR24095 16 1022 5.4E-206 T 19-04-2016 AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 ProSitePatterns PS00012 Phosphopantetheine attachment site. 553 568 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_6234 f06104fb29e78d7ba8b2ed2201666347 1029 Pfam PF13193 AMP-binding enzyme C-terminal domain 436 507 2.0E-6 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 254 364 4.1E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 Pfam PF00672 HAMP domain 73 141 3.5E-15 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 Gene3D G3DSA:3.30.565.10 206 364 8.1E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 SMART SM00304 92 145 4.5E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 363 8.0E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 305 8.0E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 319 8.0E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 344 8.0E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 SUPERFAMILY SSF158472 93 141 5.62E-8 T 19-04-2016 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 SMART SM00388 153 219 8.2E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 SMART SM00387 254 366 5.0E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 Pfam PF00512 His Kinase A (phospho-acceptor) domain 153 219 4.9E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 Gene3D G3DSA:1.10.287.130 147 205 2.2E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 SUPERFAMILY SSF55874 210 363 9.88E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 PANTHER PTHR24423 87 363 4.2E-53 T 19-04-2016 AMED_4052 401d0717b9110fd2a867efd19a4e8f8d 369 SUPERFAMILY SSF47384 144 219 1.39E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 Gene3D G3DSA:3.50.50.60 1 112 2.1E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 PANTHER PTHR22912:SF180 1 374 1.4E-83 T 19-04-2016 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 PANTHER PTHR22912 1 374 1.4E-83 T 19-04-2016 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 SUPERFAMILY SSF55424 305 380 7.69E-18 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 Gene3D G3DSA:3.30.390.30 313 374 7.1E-15 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 SUPERFAMILY SSF51905 1 182 3.81E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 294 8.4E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 Gene3D G3DSA:3.50.50.60 139 306 1.5E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 271 9.4E-17 T 19-04-2016 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 98 107 9.4E-17 T 19-04-2016 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 164 9.4E-17 T 19-04-2016 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 226 240 9.4E-17 T 19-04-2016 AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 Pfam PF14759 Reductase C-terminal 313 374 6.3E-10 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_7229 8bd5f63e00f752c907c87583fa8bce9b 386 SUPERFAMILY SSF51905 139 303 8.82E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 PANTHER PTHR23155 144 280 7.3E-24 T 19-04-2016 AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 Pfam PF13855 Leucine rich repeat 168 226 7.1E-8 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 Gene3D G3DSA:3.80.10.10 158 272 1.1E-26 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 SMART SM00364 213 232 6.4 T 19-04-2016 AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 SMART SM00364 190 209 0.21 T 19-04-2016 AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 SUPERFAMILY SSF52058 157 274 3.91E-25 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 SMART SM00369 236 259 10.0 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_7348 ecc4af586f67b133ab19ffaeec48cf11 295 SMART SM00369 190 213 0.004 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 4.3E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 4.3E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 PANTHER PTHR33154 5 97 1.1E-18 T 19-04-2016 AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 SUPERFAMILY SSF46785 1 100 2.2E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 SMART SM00418 7 85 8.9E-17 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 Pfam PF12840 Helix-turn-helix domain 8 64 1.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2497 e82e8a7add9caf416a1a765e76e1b9d3 111 Gene3D G3DSA:1.10.10.10 3 103 1.6E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 Gene3D G3DSA:2.20.25.10 2 46 1.1E-14 T 19-04-2016 AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 6 139 6.9E-48 T 19-04-2016 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 PANTHER PTHR33797 1 142 7.9E-53 T 19-04-2016 AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 Gene3D G3DSA:3.30.300.20 47 140 1.3E-32 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 SUPERFAMILY SSF82784 1 140 1.96E-39 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 Pfam PF02566 OsmC-like protein 41 138 1.9E-19 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_7473 d95013a3c2ebf8dabd0124725b9d9a41 143 PANTHER PTHR33797:SF2 1 142 7.9E-53 T 19-04-2016 AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 PANTHER PTHR11808 2 370 4.2E-132 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 SUPERFAMILY SSF53383 5 370 1.65E-78 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 PANTHER PTHR11808:SF49 2 370 4.2E-132 T 19-04-2016 AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 Gene3D G3DSA:3.90.1150.10 255 370 2.7E-27 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 PIRSF PIRSF001434 1 372 4.4E-111 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 Gene3D G3DSA:3.40.640.10 5 254 4.5E-70 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7738 178d0bc70435b3bb95c30dc73ac21baa 372 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 370 7.3E-91 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_2396 db3a2ac50104a626d5bb833e69751fde 555 SUPERFAMILY SSF52540 207 430 2.54E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2396 db3a2ac50104a626d5bb833e69751fde 555 Gene3D G3DSA:3.40.50.300 200 263 0.001 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2396 db3a2ac50104a626d5bb833e69751fde 555 SUPERFAMILY SSF55073 47 121 2.83E-5 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 SUPERFAMILY SSF56176 2 213 3.27E-64 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 Gene3D G3DSA:3.30.43.10 4 94 1.5E-24 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 Gene3D G3DSA:3.30.465.10 96 214 3.1E-36 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 Pfam PF01565 FAD binding domain 40 178 9.3E-39 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 453 2.2E-52 T 19-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 PANTHER PTHR11748:SF35 3 457 9.2E-124 T 19-04-2016 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 Gene3D G3DSA:1.10.45.10 416 453 1.0E-10 T 19-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 PANTHER PTHR11748 3 457 9.2E-124 T 19-04-2016 AMED_7883 325e822bc4aabd395d0131e7e54c2ca3 461 SUPERFAMILY SSF55103 219 458 2.13E-51 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.40.50.720 5 110 1.4E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 PANTHER PTHR10996:SF20 1 359 4.3E-151 T 19-04-2016 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF51735 103 285 1.07E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF52283 6 137 8.51E-37 T 19-04-2016 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF55021 456 530 6.87E-15 T 19-04-2016 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.40.50.720 111 286 2.7E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 284 3.7E-62 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 PANTHER PTHR10996 1 359 4.3E-151 T 19-04-2016 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 19-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.30.70.260 452 527 4.6E-15 T 19-04-2016 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 SUPERFAMILY SSF143548 324 453 3.14E-31 T 19-04-2016 IPR029009 Allosteric substrate binding domain AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 316 7.8E-33 T 19-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Gene3D G3DSA:3.30.1330.90 323 451 1.7E-38 T 19-04-2016 IPR029009 Allosteric substrate binding domain AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 Pfam PF01842 ACT domain 458 517 1.4E-11 T 19-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 AMED_1694 4025579f8d9cdce37ad5e663d994609e 532 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 9 530 6.1E-184 T 19-04-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 TIGRFAM TIGR03356 BGL: beta-galactosidase 3 445 7.9E-175 T 19-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 7 21 - T 19-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 SUPERFAMILY SSF51445 2 453 8.16E-160 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 357 365 - T 19-04-2016 IPR018120 Glycoside hydrolase family 1, active site AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 Gene3D G3DSA:3.20.20.80 2 453 1.7E-156 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PANTHER PTHR10353 3 454 5.3E-189 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 Pfam PF00232 Glycosyl hydrolase family 1 2 453 4.6E-154 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PANTHER PTHR10353:SF36 3 454 5.3E-189 T 19-04-2016 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PRINTS PR00131 Glycosyl hydrolase family 1 signature 284 298 3.1E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PRINTS PR00131 Glycosyl hydrolase family 1 signature 378 389 3.1E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PRINTS PR00131 Glycosyl hydrolase family 1 signature 423 435 3.1E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PRINTS PR00131 Glycosyl hydrolase family 1 signature 357 365 3.1E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_5198 71be9c8340de636d3d61a4a811f914b0 455 PRINTS PR00131 Glycosyl hydrolase family 1 signature 399 416 3.1E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 PANTHER PTHR22916 162 255 4.1E-52 T 19-04-2016 AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 PANTHER PTHR22916 5 145 4.1E-52 T 19-04-2016 AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 SUPERFAMILY SSF53756 380 770 1.0E-25 T 19-04-2016 AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 SUPERFAMILY SSF53448 6 233 4.34E-52 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Pfam PF13641 Glycosyltransferase like family 2 8 225 2.9E-24 T 19-04-2016 AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Pfam PF00534 Glycosyl transferases group 1 574 744 8.2E-11 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_1010 9ac9e627dceed14f6fe55ad63d5bdaf1 836 Gene3D G3DSA:3.90.550.10 8 261 1.1E-50 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SMART SM01043 95 235 4.3E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF48452 706 911 7.59E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Gene3D G3DSA:1.10.10.10 28 89 4.0E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF48452 90 243 1.06E-26 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PANTHER PTHR35807 1 314 3.7E-44 T 19-04-2016 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF46894 3 88 3.12E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SMART SM00862 16 88 3.6E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 78 1.9E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PRINTS PR00364 Disease resistance protein signature 350 364 1.0E-4 T 19-04-2016 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PRINTS PR00364 Disease resistance protein signature 453 467 1.0E-4 T 19-04-2016 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 PRINTS PR00364 Disease resistance protein signature 276 291 1.0E-4 T 19-04-2016 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Gene3D G3DSA:3.40.50.300 259 390 1.4E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Gene3D G3DSA:1.25.40.10 796 983 1.7E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 Pfam PF03704 Bacterial transcriptional activator domain 95 235 2.4E-35 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0027 7394cdeaf6f0f3cafac13f2d8ba889a8 1037 SUPERFAMILY SSF52540 249 519 1.05E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 Pfam PF00027 Cyclic nucleotide-binding domain 29 114 4.1E-24 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 PANTHER PTHR24567 1 224 8.1E-61 T 19-04-2016 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 Gene3D G3DSA:2.60.120.10 8 143 2.2E-38 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 Gene3D G3DSA:1.10.10.10 144 223 1.3E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 SMART SM00100 10 131 1.6E-27 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 Pfam PF13545 Crp-like helix-turn-helix domain 148 221 3.3E-19 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 SUPERFAMILY SSF46785 145 223 3.33E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 SUPERFAMILY SSF51206 4 142 1.1E-36 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 76 85 7.0E-5 T 19-04-2016 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 46 60 7.0E-5 T 19-04-2016 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 31 45 7.0E-5 T 19-04-2016 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 PRINTS PR00103 cAMP-dependent protein kinase signature 88 99 7.0E-5 T 19-04-2016 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 PANTHER PTHR24567:SF30 1 224 8.1E-61 T 19-04-2016 AMED_8832 13e4440d7391f97fbd342ab03cadc1e0 224 SMART SM00419 167 215 8.6E-14 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 Gene3D G3DSA:3.20.20.70 20 260 2.5E-84 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 PANTHER PTHR11082 13 366 7.1E-163 T 19-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 15 333 6.9E-118 T 19-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 SUPERFAMILY SSF51395 22 331 4.58E-81 T 19-04-2016 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 PANTHER PTHR11082:SF25 13 366 7.1E-163 T 19-04-2016 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 PIRSF PIRSF006621 12 344 4.7E-108 T 19-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 Pfam PF01207 Dihydrouridine synthase (Dus) 25 326 5.5E-102 T 19-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMED_8988 b3fb5b3e76fbc7dc8fad4935d511ea2d 379 Gene3D G3DSA:1.10.1200.80 267 341 1.4E-20 T 19-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AMED_7514 851070e241913f452b71c37f3de86a84 763 SMART SM00052 507 754 6.8E-66 T 19-04-2016 IPR001633 EAL domain AMED_7514 851070e241913f452b71c37f3de86a84 763 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 339 504 2.3E-35 T 19-04-2016 IPR000160 GGDEF domain AMED_7514 851070e241913f452b71c37f3de86a84 763 PANTHER PTHR33121:SF13 528 756 1.0E-57 T 19-04-2016 AMED_7514 851070e241913f452b71c37f3de86a84 763 PANTHER PTHR33121 528 756 1.0E-57 T 19-04-2016 AMED_7514 851070e241913f452b71c37f3de86a84 763 Pfam PF00990 Diguanylate cyclase, GGDEF domain 343 500 2.3E-39 T 19-04-2016 IPR000160 GGDEF domain AMED_7514 851070e241913f452b71c37f3de86a84 763 SUPERFAMILY SSF141868 528 753 6.02E-67 T 19-04-2016 IPR001633 EAL domain AMED_7514 851070e241913f452b71c37f3de86a84 763 Pfam PF00563 EAL domain 529 749 7.1E-58 T 19-04-2016 IPR001633 EAL domain AMED_7514 851070e241913f452b71c37f3de86a84 763 SMART SM00267 332 505 1.1E-56 T 19-04-2016 IPR000160 GGDEF domain AMED_7514 851070e241913f452b71c37f3de86a84 763 SUPERFAMILY SSF55073 348 507 2.75E-41 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_7514 851070e241913f452b71c37f3de86a84 763 Gene3D G3DSA:3.20.20.450 528 753 1.0E-69 T 19-04-2016 IPR001633 EAL domain AMED_7514 851070e241913f452b71c37f3de86a84 763 Gene3D G3DSA:3.30.70.270 344 508 1.0E-51 T 19-04-2016 AMED_0461 ecbdf4424206025c3d3ab3d7ad1b5080 327 Pfam PF02541 Ppx/GppA phosphatase family 17 305 1.0E-73 T 19-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 AMED_0461 ecbdf4424206025c3d3ab3d7ad1b5080 327 SUPERFAMILY SSF53067 130 306 1.53E-34 T 19-04-2016 AMED_0461 ecbdf4424206025c3d3ab3d7ad1b5080 327 SUPERFAMILY SSF53067 2 125 2.59E-30 T 19-04-2016 AMED_0461 ecbdf4424206025c3d3ab3d7ad1b5080 327 Gene3D G3DSA:3.30.420.40 2 122 3.8E-35 T 19-04-2016 AMED_0461 ecbdf4424206025c3d3ab3d7ad1b5080 327 PANTHER PTHR30005 2 305 1.4E-80 T 19-04-2016 AMED_0461 ecbdf4424206025c3d3ab3d7ad1b5080 327 Gene3D G3DSA:3.30.420.150 125 306 8.3E-46 T 19-04-2016 AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 Pfam PF00092 von Willebrand factor type A domain 410 594 4.8E-15 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 PANTHER PTHR10579 389 595 3.1E-19 T 19-04-2016 AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 SUPERFAMILY SSF53850 53 402 6.25E-17 T 19-04-2016 AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 Gene3D G3DSA:3.40.50.410 407 600 2.5E-19 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 SUPERFAMILY SSF53300 409 600 3.56E-25 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 SMART SM00327 408 595 2.9E-20 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_0156 f57ed84a98d3ebb5ed31c54da63c37db 602 Pfam PF13531 Bacterial extracellular solute-binding protein 54 362 9.2E-41 T 19-04-2016 AMED_1132 e35b11f935fcf5e05b8f001255ef176b 109 Gene3D G3DSA:1.10.10.10 9 83 5.0E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1132 e35b11f935fcf5e05b8f001255ef176b 109 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 9 82 7.5E-16 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_1132 e35b11f935fcf5e05b8f001255ef176b 109 SUPERFAMILY SSF46767 8 80 1.7E-14 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_1132 e35b11f935fcf5e05b8f001255ef176b 109 PANTHER PTHR10815:SF2 9 106 7.8E-27 T 19-04-2016 AMED_1132 e35b11f935fcf5e05b8f001255ef176b 109 PANTHER PTHR10815 9 106 7.8E-27 T 19-04-2016 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 Gene3D G3DSA:3.30.43.10 27 101 4.0E-12 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 42 75 - T 19-04-2016 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 Pfam PF08031 Berberine and berberine like 416 460 1.1E-13 T 19-04-2016 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 Gene3D G3DSA:3.30.465.10 102 207 5.1E-16 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 SUPERFAMILY SSF56176 15 207 2.76E-53 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 PANTHER PTHR11748 9 462 1.2E-96 T 19-04-2016 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 PANTHER PTHR11748:SF86 9 462 1.2E-96 T 19-04-2016 AMED_2696 3e59bfbfcd439c4ca062d73f231381c8 462 Pfam PF01565 FAD binding domain 42 175 3.3E-30 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 PANTHER PTHR26402:SF564 1 212 2.5E-79 T 19-04-2016 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 SUPERFAMILY SSF52172 1 131 4.55E-30 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 SMART SM00448 1 114 1.1E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 Gene3D G3DSA:1.10.10.10 121 211 6.9E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 PANTHER PTHR26402 1 212 2.5E-79 T 19-04-2016 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 5.2E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 Pfam PF00072 Response regulator receiver domain 1 114 1.0E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 SUPERFAMILY SSF46894 138 211 8.5E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 9.0E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 9.0E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 9.0E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 Gene3D G3DSA:3.40.50.2300 1 120 1.1E-31 T 19-04-2016 AMED_2931 90097eefaca73ec1d8d1e24a38320e33 212 SMART SM00421 148 205 3.7E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4758 d3e25dde6cc8a5d390d1dfcbccc3306c 408 Pfam PF13560 Helix-turn-helix domain 4 66 4.9E-10 T 19-04-2016 AMED_4758 d3e25dde6cc8a5d390d1dfcbccc3306c 408 SMART SM00530 8 64 1.5E-4 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4758 d3e25dde6cc8a5d390d1dfcbccc3306c 408 SUPERFAMILY SSF52540 86 340 1.14E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4758 d3e25dde6cc8a5d390d1dfcbccc3306c 408 Gene3D G3DSA:3.40.50.300 114 153 3.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4758 d3e25dde6cc8a5d390d1dfcbccc3306c 408 Gene3D G3DSA:1.10.260.40 3 60 5.1E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4758 d3e25dde6cc8a5d390d1dfcbccc3306c 408 SUPERFAMILY SSF47413 3 60 3.56E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1784 5538ddc685c45bc3b487ce0349a29a24 67 Gene3D G3DSA:1.20.1290.10 16 57 8.2E-4 T 19-04-2016 IPR029032 AhpD-like AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 Gene3D G3DSA:3.40.50.2300 1 116 5.5E-32 T 19-04-2016 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 SMART SM00862 142 214 1.4E-20 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 Gene3D G3DSA:1.10.10.10 118 214 3.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 PANTHER PTHR26402 1 217 1.0E-84 T 19-04-2016 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 Pfam PF00072 Response regulator receiver domain 1 110 4.4E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 PANTHER PTHR26402:SF553 1 217 1.0E-84 T 19-04-2016 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 213 5.1E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 SMART SM00448 1 109 1.6E-32 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2625 c1cafe47cdf188e4d60b93af8eb756bb 222 SUPERFAMILY SSF52172 1 170 1.1E-34 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 SMART SM00525 178 198 1.1E-5 T 19-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 PIRSF PIRSF001435 5 202 7.8E-46 T 19-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 179 195 - T 19-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 PANTHER PTHR10359 5 198 8.1E-75 T 19-04-2016 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 Pfam PF00633 Helix-hairpin-helix motif 91 118 1.8E-9 T 19-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 179 195 2.5E-4 T 19-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 PANTHER PTHR10359:SF18 5 198 8.1E-75 T 19-04-2016 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 ProSitePatterns PS01155 Endonuclease III family signature. 94 123 - T 19-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 Gene3D G3DSA:1.10.340.30 14 114 3.1E-32 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 SMART SM00478 30 177 2.7E-56 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 TIGRFAM TIGR01083 nth: endonuclease III 4 186 5.2E-79 T 19-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 SUPERFAMILY SSF48150 5 199 6.44E-65 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 26 160 2.2E-19 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 Hamap MF_00942 Endonuclease III [nth]. 1 201 36.346 T 19-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMED_8830 7f5fee99edcd4f94079c1f26f1b7cec6 227 Gene3D G3DSA:1.10.1670.10 115 199 1.3E-33 T 19-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 PANTHER PTHR32114:SF2 2 983 5.5E-79 T 19-04-2016 AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 Pfam PF13558 Putative exonuclease SbcCD, C subunit 879 941 3.6E-12 T 19-04-2016 AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 Gene3D G3DSA:3.40.50.300 533 550 5.7E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 Gene3D G3DSA:3.40.50.300 682 726 5.7E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 Gene3D G3DSA:3.40.50.300 1 181 4.8E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 Gene3D G3DSA:3.40.50.300 840 978 4.8E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 SUPERFAMILY SSF52540 829 974 7.41E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 SUPERFAMILY SSF52540 1 226 7.41E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 31 44 - T 19-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 PANTHER PTHR32114 2 983 5.5E-79 T 19-04-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 AMED_8050 642b6aa13ff62adcce536bcff9f942a2 983 Pfam PF13476 AAA domain 5 186 1.4E-26 T 19-04-2016 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 SUPERFAMILY SSF52540 127 232 2.25E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 SUPERFAMILY SSF52540 8 89 2.25E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 Gene3D G3DSA:1.10.10.10 847 905 1.1E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 Pfam PF00196 Bacterial regulatory proteins, luxR family 854 905 1.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 SUPERFAMILY SSF46894 846 905 5.1E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 ProSitePatterns PS00622 LuxR-type HTH domain signature. 869 896 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 SMART SM00421 852 909 2.9E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 855 869 2.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 885 2.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 885 897 2.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 Pfam PF13191 AAA ATPase domain 9 166 2.7E-21 T 19-04-2016 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 PANTHER PTHR16305:SF28 5 849 1.2E-91 T 19-04-2016 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 PANTHER PTHR16305 5 849 1.2E-91 T 19-04-2016 AMED_5640 2c18933a21737f4664a67e7c6d952f17 909 Gene3D G3DSA:3.40.50.300 7 51 3.3E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1399 6506f91c74b759cd76a9d0195d5123b0 163 Pfam PF02627 Carboxymuconolactone decarboxylase family 17 96 1.0E-19 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_1399 6506f91c74b759cd76a9d0195d5123b0 163 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 31 80 2.1E-20 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_1399 6506f91c74b759cd76a9d0195d5123b0 163 Gene3D G3DSA:1.20.1290.10 15 146 1.1E-46 T 19-04-2016 IPR029032 AhpD-like AMED_1399 6506f91c74b759cd76a9d0195d5123b0 163 SUPERFAMILY SSF69118 16 144 2.49E-38 T 19-04-2016 IPR029032 AhpD-like AMED_3445 6359abb85391cebd831b224c45988d18 528 Pfam PF00501 AMP-binding enzyme 21 423 4.1E-82 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3445 6359abb85391cebd831b224c45988d18 528 PANTHER PTHR24096 6 521 2.2E-277 T 19-04-2016 AMED_3445 6359abb85391cebd831b224c45988d18 528 SUPERFAMILY SSF56801 8 523 6.54E-132 T 19-04-2016 AMED_3445 6359abb85391cebd831b224c45988d18 528 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 511 3.1E-19 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3445 6359abb85391cebd831b224c45988d18 528 Gene3D G3DSA:3.40.50.980 183 341 1.7E-37 T 19-04-2016 AMED_3445 6359abb85391cebd831b224c45988d18 528 Gene3D G3DSA:2.30.38.10 342 414 8.3E-26 T 19-04-2016 AMED_3445 6359abb85391cebd831b224c45988d18 528 PANTHER PTHR24096:SF141 6 521 2.2E-277 T 19-04-2016 AMED_3445 6359abb85391cebd831b224c45988d18 528 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3445 6359abb85391cebd831b224c45988d18 528 Gene3D G3DSA:3.30.300.30 418 521 7.2E-28 T 19-04-2016 AMED_3445 6359abb85391cebd831b224c45988d18 528 Gene3D G3DSA:3.40.50.980 12 182 9.8E-20 T 19-04-2016 AMED_0712 ff63adf2abefbdb6e5cf1958756d80e2 411 TIGRFAM TIGR03923 T7SS_EccE: type VII secretion protein EccE 17 409 5.8E-57 T 19-04-2016 IPR021368 Type VII secretion system protein EccE AMED_0712 ff63adf2abefbdb6e5cf1958756d80e2 411 Pfam PF11203 Putative type VII ESX secretion system translocon, EccE 216 318 1.9E-24 T 19-04-2016 IPR021368 Type VII secretion system protein EccE AMED_7587 0535044bff6777e2848844fdea931b4d 258 PANTHER PTHR38600:SF1 1 123 4.1E-20 T 19-04-2016 AMED_7587 0535044bff6777e2848844fdea931b4d 258 SUPERFAMILY SSF55961 102 257 2.98E-28 T 19-04-2016 AMED_7587 0535044bff6777e2848844fdea931b4d 258 Gene3D G3DSA:1.10.10.10 1 100 1.7E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7587 0535044bff6777e2848844fdea931b4d 258 Gene3D G3DSA:3.30.530.20 101 257 1.8E-28 T 19-04-2016 IPR023393 START-like domain AMED_7587 0535044bff6777e2848844fdea931b4d 258 SMART SM00418 3 78 9.6E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7587 0535044bff6777e2848844fdea931b4d 258 Pfam PF12840 Helix-turn-helix domain 2 62 3.1E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7587 0535044bff6777e2848844fdea931b4d 258 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 38 53 4.4E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7587 0535044bff6777e2848844fdea931b4d 258 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 4.4E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7587 0535044bff6777e2848844fdea931b4d 258 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 4.4E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7587 0535044bff6777e2848844fdea931b4d 258 PANTHER PTHR38600 1 123 4.1E-20 T 19-04-2016 AMED_7587 0535044bff6777e2848844fdea931b4d 258 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 114 252 1.1E-22 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_7587 0535044bff6777e2848844fdea931b4d 258 SUPERFAMILY SSF46785 1 99 3.06E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2039 72d720d197c4bd511b631cfd4afe7f0f 207 SUPERFAMILY SSF53335 36 161 1.3E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2039 72d720d197c4bd511b631cfd4afe7f0f 207 Pfam PF13489 Methyltransferase domain 27 133 3.0E-14 T 19-04-2016 AMED_2039 72d720d197c4bd511b631cfd4afe7f0f 207 PANTHER PTHR10108 15 160 8.7E-14 T 19-04-2016 AMED_2039 72d720d197c4bd511b631cfd4afe7f0f 207 Gene3D G3DSA:3.40.50.150 36 148 5.7E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 19-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 SUPERFAMILY SSF53254 2 204 2.88E-42 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 PANTHER PTHR23029 1 203 4.0E-40 T 19-04-2016 AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 PANTHER PTHR23029:SF1 1 203 4.0E-40 T 19-04-2016 AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 203 1.9E-44 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 SMART SM00855 2 161 3.3E-18 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0182 5a6923a5b246a30091e4ca2d24003ace 205 Gene3D G3DSA:3.40.50.1240 2 203 1.7E-40 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 Gene3D G3DSA:2.120.10.30 166 464 5.5E-41 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 Gene3D G3DSA:3.40.30.10 3 145 6.8E-39 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 SUPERFAMILY SSF101898 156 464 3.4E-27 T 19-04-2016 AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 Pfam PF01436 NHL repeat 401 428 2.4E-4 T 19-04-2016 IPR001258 NHL repeat GO:0005515 AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 SUPERFAMILY SSF52833 13 144 5.56E-30 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 PANTHER PTHR13833:SF38 1 442 9.9E-99 T 19-04-2016 AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 PANTHER PTHR13833 1 442 9.9E-99 T 19-04-2016 AMED_9203 824a91cf4bb24e18027f959be9f435c1 605 Pfam PF00578 AhpC/TSA family 3 122 2.6E-10 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 Pfam PF01799 [2Fe-2S] binding domain 74 146 1.2E-30 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 55 9.4E-8 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 SUPERFAMILY SSF47741 85 151 1.31E-32 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 Gene3D G3DSA:3.10.20.30 2 75 7.5E-25 T 19-04-2016 IPR012675 Beta-grasp domain AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 Gene3D G3DSA:1.10.150.120 76 152 1.5E-36 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 PANTHER PTHR11908 1 147 1.5E-44 T 19-04-2016 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 SUPERFAMILY SSF54292 2 79 2.49E-20 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1920 887e29dd2a2bf6428392123d96cc3683 155 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_2870 d66b36d411c369e2da28d45970829136 418 Gene3D G3DSA:3.40.50.150 140 413 9.9E-90 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2870 d66b36d411c369e2da28d45970829136 418 PANTHER PTHR10108:SF795 347 411 1.5E-107 T 19-04-2016 AMED_2870 d66b36d411c369e2da28d45970829136 418 PANTHER PTHR10108:SF795 76 329 1.5E-107 T 19-04-2016 AMED_2870 d66b36d411c369e2da28d45970829136 418 SUPERFAMILY SSF53335 151 411 6.29E-65 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2870 d66b36d411c369e2da28d45970829136 418 PIRSF PIRSF003085 31 418 3.6E-112 T 19-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AMED_2870 d66b36d411c369e2da28d45970829136 418 Pfam PF02353 Mycolic acid cyclopropane synthetase 145 411 7.7E-83 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2870 d66b36d411c369e2da28d45970829136 418 PANTHER PTHR10108 347 411 1.5E-107 T 19-04-2016 AMED_2870 d66b36d411c369e2da28d45970829136 418 PANTHER PTHR10108 76 329 1.5E-107 T 19-04-2016 AMED_0537 c847cc1ccf6ff82eb9878a2fe0e7a755 350 Gene3D G3DSA:1.10.600.10 39 349 5.5E-90 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_0537 c847cc1ccf6ff82eb9878a2fe0e7a755 350 SUPERFAMILY SSF48576 36 349 1.12E-82 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_0537 c847cc1ccf6ff82eb9878a2fe0e7a755 350 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 231 243 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_0537 c847cc1ccf6ff82eb9878a2fe0e7a755 350 PANTHER PTHR12001 23 350 1.1E-93 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMED_0537 c847cc1ccf6ff82eb9878a2fe0e7a755 350 Pfam PF00348 Polyprenyl synthetase 60 301 6.9E-59 T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 26 435 2.3E-77 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 SUPERFAMILY SSF103473 474 505 1.05E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 SUPERFAMILY SSF103473 12 205 1.05E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 SUPERFAMILY SSF103473 259 431 1.05E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 Pfam PF07690 Major Facilitator Superfamily 29 422 3.1E-46 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 SUPERFAMILY SSF46785 537 660 1.4E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 PANTHER PTHR23501:SF75 11 544 5.4E-254 T 19-04-2016 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 PANTHER PTHR23501 11 544 5.4E-254 T 19-04-2016 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 Gene3D G3DSA:1.20.1250.20 475 507 2.0E-21 T 19-04-2016 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 Gene3D G3DSA:1.20.1250.20 274 432 2.0E-21 T 19-04-2016 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 Gene3D G3DSA:1.20.1250.20 25 200 7.5E-32 T 19-04-2016 AMED_4610 a1be6acdc1fa0737155be5eb3d276048 676 Gene3D G3DSA:1.10.10.10 519 659 4.2E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5976 09466daffd407be71c570f102494f7ba 269 PANTHER PTHR30136 16 259 1.1E-72 T 19-04-2016 AMED_5976 09466daffd407be71c570f102494f7ba 269 PANTHER PTHR30136:SF12 16 259 1.1E-72 T 19-04-2016 AMED_5976 09466daffd407be71c570f102494f7ba 269 SUPERFAMILY SSF55781 92 263 8.5E-42 T 19-04-2016 IPR029016 GAF domain-like AMED_5976 09466daffd407be71c570f102494f7ba 269 SUPERFAMILY SSF46785 21 94 1.42E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5976 09466daffd407be71c570f102494f7ba 269 Pfam PF01614 Bacterial transcriptional regulator 140 259 1.2E-28 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_5976 09466daffd407be71c570f102494f7ba 269 Pfam PF09339 IclR helix-turn-helix domain 23 73 2.6E-12 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5976 09466daffd407be71c570f102494f7ba 269 Gene3D G3DSA:3.30.450.40 89 264 6.5E-45 T 19-04-2016 IPR029016 GAF domain-like AMED_5976 09466daffd407be71c570f102494f7ba 269 SMART SM00346 21 111 7.5E-14 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5976 09466daffd407be71c570f102494f7ba 269 Gene3D G3DSA:1.10.10.10 11 82 1.7E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 SMART SM00342 196 279 1.2E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 Pfam PF12833 Helix-turn-helix domain 202 281 6.4E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 Gene3D G3DSA:1.10.10.60 187 229 3.5E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 4.2E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 4.2E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 Gene3D G3DSA:2.60.120.280 34 113 1.7E-4 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 SUPERFAMILY SSF51215 33 101 2.48E-6 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 PANTHER PTHR11019:SF137 8 287 1.4E-58 T 19-04-2016 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 PANTHER PTHR11019 8 287 1.4E-58 T 19-04-2016 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 SUPERFAMILY SSF46689 236 283 5.82E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5781 7d3e916de7bc964883c8ebb2f7aab6b2 289 Gene3D G3DSA:1.10.10.60 236 281 2.1E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7571 5645b0e0520693b9f3cb6ae27c7f9f62 361 Gene3D G3DSA:3.40.50.970 11 354 3.7E-120 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7571 5645b0e0520693b9f3cb6ae27c7f9f62 361 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 16 354 1.3E-128 T 19-04-2016 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMED_7571 5645b0e0520693b9f3cb6ae27c7f9f62 361 SUPERFAMILY SSF52518 35 357 1.43E-89 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7571 5645b0e0520693b9f3cb6ae27c7f9f62 361 PANTHER PTHR11516 17 360 9.4E-116 T 19-04-2016 AMED_7571 5645b0e0520693b9f3cb6ae27c7f9f62 361 PANTHER PTHR11516:SF1 17 360 9.4E-116 T 19-04-2016 AMED_7571 5645b0e0520693b9f3cb6ae27c7f9f62 361 Pfam PF00676 Dehydrogenase E1 component 44 311 2.5E-73 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_3930 b4ac8de60271562293584331221a0f6b 328 SUPERFAMILY SSF88659 109 191 1.2E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3930 b4ac8de60271562293584331221a0f6b 328 Pfam PF08281 Sigma-70, region 4 137 189 1.3E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3930 b4ac8de60271562293584331221a0f6b 328 PANTHER PTHR30173:SF22 23 285 1.0E-86 T 19-04-2016 AMED_3930 b4ac8de60271562293584331221a0f6b 328 Gene3D G3DSA:1.10.10.10 132 191 2.4E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3930 b4ac8de60271562293584331221a0f6b 328 SUPERFAMILY SSF54427 205 317 2.21E-8 T 19-04-2016 IPR032710 NTF2-like domain AMED_3930 b4ac8de60271562293584331221a0f6b 328 Gene3D G3DSA:3.10.450.50 202 321 8.1E-10 T 19-04-2016 IPR032710 NTF2-like domain AMED_3930 b4ac8de60271562293584331221a0f6b 328 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 11 321 1.1E-95 T 19-04-2016 IPR014305 RNA polymerase sigma-G type, actinobacteria AMED_3930 b4ac8de60271562293584331221a0f6b 328 SUPERFAMILY SSF88946 7 88 9.81E-21 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3930 b4ac8de60271562293584331221a0f6b 328 Gene3D G3DSA:1.10.1740.10 6 100 4.9E-25 T 19-04-2016 AMED_3930 b4ac8de60271562293584331221a0f6b 328 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 189 6.9E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3930 b4ac8de60271562293584331221a0f6b 328 PANTHER PTHR30173 23 285 1.0E-86 T 19-04-2016 AMED_3930 b4ac8de60271562293584331221a0f6b 328 Pfam PF04542 Sigma-70 region 2 23 83 7.6E-17 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3930 b4ac8de60271562293584331221a0f6b 328 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 40 71 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 Gene3D G3DSA:3.40.50.300 4 178 2.2E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 173 1.6E-18 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 Pfam PF07650 KH domain 213 292 4.5E-18 T 19-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 SUPERFAMILY SSF52540 10 222 5.55E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 Gene3D G3DSA:3.30.300.20 193 299 1.7E-35 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 PANTHER PTHR11649:SF3 3 303 3.7E-101 T 19-04-2016 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 PANTHER PTHR11649 3 303 3.7E-101 T 19-04-2016 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 Pfam PF01926 50S ribosome-binding GTPase 10 112 2.7E-20 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 TIGRFAM TIGR00436 era: GTP-binding protein Era 7 286 9.9E-69 T 19-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 Hamap MF_00367 GTPase Era [era]. 4 303 34.527 T 19-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 AMED_6621 82c50343c39eff71445b8a51fae5de7c 303 SUPERFAMILY SSF54814 188 303 2.94E-34 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMED_4825 ff4d2367b3cc9cb69334c8f59d4793f1 225 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 132 220 2.6E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4825 ff4d2367b3cc9cb69334c8f59d4793f1 225 SUPERFAMILY SSF55874 117 221 2.05E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4825 ff4d2367b3cc9cb69334c8f59d4793f1 225 Gene3D G3DSA:3.30.565.10 134 222 2.0E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4825 ff4d2367b3cc9cb69334c8f59d4793f1 225 PANTHER PTHR24421 21 221 2.6E-37 T 19-04-2016 AMED_4825 ff4d2367b3cc9cb69334c8f59d4793f1 225 Pfam PF07730 Histidine kinase 22 86 4.2E-11 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Gene3D G3DSA:3.40.630.10 5 204 5.5E-59 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Gene3D G3DSA:3.40.630.10 370 434 5.5E-59 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 PANTHER PTHR11014:SF106 6 254 4.6E-99 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 PANTHER PTHR11014:SF106 272 434 4.6E-99 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Pfam PF07687 Peptidase dimerisation domain 192 319 1.2E-13 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 SUPERFAMILY SSF53187 345 434 8.91E-55 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 SUPERFAMILY SSF53187 5 195 8.91E-55 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Gene3D G3DSA:3.30.70.360 205 244 2.0E-22 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Gene3D G3DSA:3.30.70.360 285 330 2.0E-22 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 SUPERFAMILY SSF55031 196 241 3.98E-9 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 SUPERFAMILY SSF55031 286 319 3.98E-9 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 PANTHER PTHR11014 6 254 4.6E-99 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 PANTHER PTHR11014 272 434 4.6E-99 T 19-04-2016 AMED_4653 57ae2ca39d85c6ed889eeda0a3e0f7a1 435 Pfam PF01546 Peptidase family M20/M25/M40 75 434 5.2E-35 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_5900 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 PANTHER PTHR10992 3 276 4.4E-25 T 19-04-2016 AMED_5900 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 SUPERFAMILY SSF53474 3 273 3.16E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5900 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 Gene3D G3DSA:3.40.50.1820 5 274 7.2E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5900 6eb77dc51e1ba6cfc9b5507cd6d76d81 276 Pfam PF12697 Alpha/beta hydrolase family 22 268 1.7E-12 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0852 15832b45c2ee203f0e42adfb3517c819 147 PANTHER PTHR41910 22 144 2.5E-40 T 19-04-2016 AMED_0852 15832b45c2ee203f0e42adfb3517c819 147 Gene3D G3DSA:1.20.1300.10 23 133 7.5E-31 T 19-04-2016 AMED_0852 15832b45c2ee203f0e42adfb3517c819 147 SUPERFAMILY SSF81343 24 134 2.13E-27 T 19-04-2016 AMED_0852 15832b45c2ee203f0e42adfb3517c819 147 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 26 129 2.8E-28 T 19-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 AMED_0852 15832b45c2ee203f0e42adfb3517c819 147 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 26 128 3.0E-23 T 19-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 AMED_1392 81396f4927d2443c4888421b0ad42607 220 SUPERFAMILY SSF88713 27 206 1.11E-54 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_1392 81396f4927d2443c4888421b0ad42607 220 PANTHER PTHR10587:SF93 30 219 5.3E-101 T 19-04-2016 AMED_1392 81396f4927d2443c4888421b0ad42607 220 Gene3D G3DSA:3.20.20.370 27 206 2.2E-51 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_1392 81396f4927d2443c4888421b0ad42607 220 Pfam PF01522 Polysaccharide deacetylase 31 148 3.8E-33 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_1392 81396f4927d2443c4888421b0ad42607 220 PANTHER PTHR10587 30 219 5.3E-101 T 19-04-2016 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 SUPERFAMILY SSF56601 45 295 3.81E-72 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 177 202 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 115 140 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 213 228 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 75 92 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 151 175 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 230 245 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PRINTS PR00118 Beta-lactamase class A signature 44 68 2.4E-62 T 19-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PANTHER PTHR35333 42 297 1.0E-95 T 19-04-2016 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 ProSitePatterns PS00146 Beta-lactamase class-A active site. 77 92 - T 19-04-2016 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 Gene3D G3DSA:3.40.710.10 44 297 1.3E-96 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 Pfam PF13354 Beta-lactamase enzyme family 65 269 2.9E-36 T 19-04-2016 AMED_5124 f5760e4075cbe1973df5b4d7ed86e52f 299 PANTHER PTHR35333:SF2 42 297 1.0E-95 T 19-04-2016 AMED_1007 8b159396f39c880d84326786d397e752 329 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 321 3.4E-131 T 19-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 AMED_1007 8b159396f39c880d84326786d397e752 329 PANTHER PTHR10366:SF41 2 321 2.2E-149 T 19-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 AMED_1007 8b159396f39c880d84326786d397e752 329 Gene3D G3DSA:3.40.50.720 1 183 5.9E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1007 8b159396f39c880d84326786d397e752 329 PANTHER PTHR10366 2 321 2.2E-149 T 19-04-2016 AMED_1007 8b159396f39c880d84326786d397e752 329 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 305 5.3E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1007 8b159396f39c880d84326786d397e752 329 SUPERFAMILY SSF51735 1 321 8.0E-99 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1007 8b159396f39c880d84326786d397e752 329 Gene3D G3DSA:3.90.25.10 184 320 7.1E-51 T 19-04-2016 AMED_9130 ce66aeab2343f6bf2e2f976c1cabf383 224 Pfam PF09335 SNARE associated Golgi protein 44 171 1.7E-21 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_9130 ce66aeab2343f6bf2e2f976c1cabf383 224 PANTHER PTHR30353 23 172 2.0E-43 T 19-04-2016 IPR032818 DedA family AMED_9130 ce66aeab2343f6bf2e2f976c1cabf383 224 PANTHER PTHR30353:SF0 23 172 2.0E-43 T 19-04-2016 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 Gene3D G3DSA:3.40.50.300 2 160 1.1E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 PANTHER PTHR23115 3 269 2.9E-86 T 19-04-2016 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 Gene3D G3DSA:1.10.10.10 519 567 2.1E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 3 338 1.0E-72 T 19-04-2016 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 Gene3D G3DSA:2.40.30.10 171 289 2.2E-22 T 19-04-2016 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 Pfam PF09107 Elongation factor SelB, winged helix 525 568 4.7E-10 T 19-04-2016 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 Pfam PF00009 Elongation factor Tu GTP binding domain 2 126 2.3E-22 T 19-04-2016 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 SUPERFAMILY SSF52540 2 189 1.09E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 PANTHER PTHR23115:SF129 3 269 2.9E-86 T 19-04-2016 AMED_5116 e85136542a7c5146b0dbd8280d1eeb19 574 SUPERFAMILY SSF50447 171 258 1.49E-17 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 Gene3D G3DSA:3.40.50.10330 246 293 6.4E-5 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 SMART SM00046 203 321 7.7E-4 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 SUPERFAMILY SSF111331 203 491 4.41E-43 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 SMART SM00014 67 176 9.8E-26 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 PANTHER PTHR14969:SF23 31 176 7.3E-32 T 19-04-2016 AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 SUPERFAMILY SSF48317 23 179 7.19E-33 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 Pfam PF01569 PAP2 superfamily 71 179 3.8E-16 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 PANTHER PTHR14969 31 176 7.3E-32 T 19-04-2016 AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 Gene3D G3DSA:1.20.144.10 15 180 9.8E-31 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_4891 32aa7c9665ec62183794985e81f8c5ee 493 Pfam PF00781 Diacylglycerol kinase catalytic domain 204 320 4.5E-15 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 9.8E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 PANTHER PTHR30055 1 178 1.9E-24 T 19-04-2016 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 PANTHER PTHR30055:SF75 1 178 1.9E-24 T 19-04-2016 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 Gene3D G3DSA:1.10.10.60 8 54 1.4E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 Gene3D G3DSA:1.10.357.10 55 183 4.3E-9 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9214 d2fbb231d20f86344a8fa519709215b8 186 SUPERFAMILY SSF46689 5 81 1.47E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1376 b1ca63cf25beb4f37736f1a6b67b013a 325 PANTHER PTHR30024 1 320 2.5E-38 T 19-04-2016 AMED_1376 b1ca63cf25beb4f37736f1a6b67b013a 325 SUPERFAMILY SSF53850 37 254 4.47E-36 T 19-04-2016 AMED_1376 b1ca63cf25beb4f37736f1a6b67b013a 325 Gene3D G3DSA:3.40.190.10 126 249 2.1E-23 T 19-04-2016 AMED_1376 b1ca63cf25beb4f37736f1a6b67b013a 325 Pfam PF09084 NMT1/THI5 like 49 259 2.6E-30 T 19-04-2016 IPR015168 SsuA/THI5-like AMED_6591 5fe9cacb22531f3f33f427a4112271e1 452 Gene3D G3DSA:1.20.1250.20 259 437 1.1E-7 T 19-04-2016 AMED_6591 5fe9cacb22531f3f33f427a4112271e1 452 Gene3D G3DSA:1.20.1250.20 11 190 9.2E-23 T 19-04-2016 AMED_6591 5fe9cacb22531f3f33f427a4112271e1 452 Pfam PF07690 Major Facilitator Superfamily 13 402 1.4E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6591 5fe9cacb22531f3f33f427a4112271e1 452 PANTHER PTHR23501 3 439 3.9E-69 T 19-04-2016 AMED_6591 5fe9cacb22531f3f33f427a4112271e1 452 SUPERFAMILY SSF103473 241 438 5.1E-46 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6591 5fe9cacb22531f3f33f427a4112271e1 452 SUPERFAMILY SSF103473 5 196 5.1E-46 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 PANTHER PTHR11632:SF53 1 639 0.0 T 19-04-2016 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:1.20.58.100 485 596 1.6E-32 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 PANTHER PTHR11632 1 639 0.0 T 19-04-2016 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF46977 500 639 3.14E-42 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF56425 269 411 1.64E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:3.50.50.60 34 274 2.1E-75 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:3.50.50.60 406 458 2.1E-75 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 Pfam PF00890 FAD binding domain 44 449 2.6E-56 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 Gene3D G3DSA:3.90.700.10 275 404 1.1E-15 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 44 639 9.0E-303 T 19-04-2016 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|UniPathway: UPA00223 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF51905 39 285 1.37E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 SUPERFAMILY SSF51905 414 460 1.37E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3220 308e20ce33dbac6c5712f361f15b23ae 640 Pfam PF02910 Fumarate reductase flavoprotein C-term 508 639 1.4E-36 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00636 310 724 1.3E-121 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00553 Cellulose binding domain 28 116 1.8E-10 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF49265 122 303 9.43E-28 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:3.20.20.80 701 736 3.6E-94 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:3.20.20.80 302 626 3.6E-94 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00041 Fibronectin type III domain 220 289 2.8E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00041 Fibronectin type III domain 126 201 2.8E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:2.60.40.10 122 209 1.2E-20 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:2.60.40.10 217 301 3.0E-22 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 PANTHER PTHR11177 408 737 7.6E-96 T 19-04-2016 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 PANTHER PTHR11177 1 18 7.6E-96 T 19-04-2016 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 PANTHER PTHR11177 310 366 7.6E-96 T 19-04-2016 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:3.10.50.10 627 696 1.5E-16 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 ProSitePatterns PS01095 Chitinases family 18 active site. 480 488 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF51445 306 623 4.88E-87 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF51445 694 725 4.88E-87 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00060 219 293 1.4E-11 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00060 124 198 2.7E-10 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Gene3D G3DSA:2.60.40.290 28 118 9.7E-17 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SMART SM00637 21 116 2.1E-7 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF49384 19 116 6.98E-12 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 Pfam PF00704 Glycosyl hydrolases family 18 313 724 2.4E-73 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_5049 833dcfa4be6fe68b162f276558bc2982 737 SUPERFAMILY SSF54556 625 696 4.51E-11 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_0635 20e820019584cf06badaf86d3572f2e5 166 Gene3D G3DSA:2.30.110.10 5 139 7.9E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0635 20e820019584cf06badaf86d3572f2e5 166 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 92 1.0E-11 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_0635 20e820019584cf06badaf86d3572f2e5 166 SUPERFAMILY SSF50475 4 136 1.05E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_3873 c46b262a9683992e6bad42bbcaf4c69e 448 SUPERFAMILY SSF56801 294 413 1.57E-8 T 19-04-2016 AMED_3873 c46b262a9683992e6bad42bbcaf4c69e 448 SUPERFAMILY SSF56801 99 226 1.57E-8 T 19-04-2016 AMED_4981 eb50c9580ac3491de66b349e5e6ca404 724 SUPERFAMILY SSF53448 484 702 5.01E-31 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4981 eb50c9580ac3491de66b349e5e6ca404 724 PANTHER PTHR10859 467 709 7.3E-38 T 19-04-2016 AMED_4981 eb50c9580ac3491de66b349e5e6ca404 724 Pfam PF00535 Glycosyl transferase family 2 487 644 5.9E-18 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_4981 eb50c9580ac3491de66b349e5e6ca404 724 Gene3D G3DSA:3.90.550.10 486 681 3.7E-14 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5579 d1a587f0931e78a5f28882a18f608463 248 Gene3D G3DSA:1.10.10.10 178 230 2.2E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5579 d1a587f0931e78a5f28882a18f608463 248 SMART SM01012 174 229 8.7E-16 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5579 d1a587f0931e78a5f28882a18f608463 248 Gene3D G3DSA:3.30.450.40 7 177 2.6E-22 T 19-04-2016 IPR029016 GAF domain-like AMED_5579 d1a587f0931e78a5f28882a18f608463 248 SUPERFAMILY SSF55781 24 172 3.05E-23 T 19-04-2016 IPR029016 GAF domain-like AMED_5579 d1a587f0931e78a5f28882a18f608463 248 SMART SM00065 24 172 2.6E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5579 d1a587f0931e78a5f28882a18f608463 248 PIRSF PIRSF036625 1 237 3.3E-60 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_5579 d1a587f0931e78a5f28882a18f608463 248 Pfam PF13185 GAF domain 24 162 1.3E-17 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5579 d1a587f0931e78a5f28882a18f608463 248 SUPERFAMILY SSF52172 162 228 7.45E-7 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5579 d1a587f0931e78a5f28882a18f608463 248 Pfam PF03861 ANTAR domain 176 228 2.3E-15 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 SUPERFAMILY SSF46689 6 79 8.98E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 PANTHER PTHR30055 5 189 5.1E-50 T 19-04-2016 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 PANTHER PTHR30055:SF54 5 189 5.1E-50 T 19-04-2016 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 Gene3D G3DSA:1.10.10.60 6 59 6.7E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 Gene3D G3DSA:1.10.357.10 60 186 4.5E-16 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 1.2E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 5.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3753 37d5f682041052a91415b9c5baa0968d 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 5.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 PANTHER PTHR11922 151 234 3.6E-43 T 19-04-2016 AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 PANTHER PTHR11922 33 134 3.6E-43 T 19-04-2016 AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 Pfam PF07722 Peptidase C26 6 214 7.8E-59 T 19-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 PANTHER PTHR11922:SF18 151 234 3.6E-43 T 19-04-2016 AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 PANTHER PTHR11922:SF18 33 134 3.6E-43 T 19-04-2016 AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 Gene3D G3DSA:3.40.50.880 5 232 4.2E-43 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_1808 9f55d097fbb1fb30628e693d814d9203 234 SUPERFAMILY SSF52317 33 232 5.6E-35 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_4814 6ac81f28256ab71cf3ea3926c15392b3 424 SUPERFAMILY SSF52540 41 90 1.51E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4814 6ac81f28256ab71cf3ea3926c15392b3 424 SUPERFAMILY SSF52540 129 225 1.51E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4814 6ac81f28256ab71cf3ea3926c15392b3 424 Gene3D G3DSA:3.40.50.300 41 89 1.8E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4814 6ac81f28256ab71cf3ea3926c15392b3 424 Gene3D G3DSA:3.40.50.300 128 222 1.8E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 SUPERFAMILY SSF46946 137 218 9.03E-19 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 Gene3D G3DSA:3.20.190.10 2 138 1.8E-18 T 19-04-2016 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 SMART SM00898 2 124 1.2E-18 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 Gene3D G3DSA:1.10.8.50 139 271 4.8E-31 T 19-04-2016 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 PANTHER PTHR22993 1 271 6.5E-112 T 19-04-2016 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 86 3.0E-15 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 PANTHER PTHR22993:SF16 1 271 6.5E-112 T 19-04-2016 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 4.0E-8 T 19-04-2016 IPR010663 Zinc finger, FPG/IleRS-type AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 SUPERFAMILY SSF57716 227 271 1.8E-11 T 19-04-2016 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 SUPERFAMILY SSF81624 2 143 5.76E-22 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 SMART SM01232 138 228 1.0E-17 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_0130 54efe9c2af93a86cd280d9d22d4a529d 286 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 138 219 5.2E-14 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_9199 a50f4eb8488eb9ac7decbbb93cd27bc1 279 PANTHER PTHR35010:SF3 1 263 1.5E-94 T 19-04-2016 AMED_9199 a50f4eb8488eb9ac7decbbb93cd27bc1 279 SUPERFAMILY SSF47413 37 85 1.13E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9199 a50f4eb8488eb9ac7decbbb93cd27bc1 279 Pfam PF13560 Helix-turn-helix domain 13 92 9.9E-15 T 19-04-2016 AMED_9199 a50f4eb8488eb9ac7decbbb93cd27bc1 279 Gene3D G3DSA:1.10.260.40 8 85 7.4E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9199 a50f4eb8488eb9ac7decbbb93cd27bc1 279 SMART SM00530 17 89 0.0015 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_9199 a50f4eb8488eb9ac7decbbb93cd27bc1 279 PANTHER PTHR35010 1 263 1.5E-94 T 19-04-2016 AMED_3591 92ced370174159949e0a81887b90e2a7 502 Gene3D G3DSA:3.30.450.20 306 414 1.8E-9 T 19-04-2016 AMED_3591 92ced370174159949e0a81887b90e2a7 502 SUPERFAMILY SSF53335 78 272 1.57E-47 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3591 92ced370174159949e0a81887b90e2a7 502 SUPERFAMILY SSF55785 304 414 6.07E-8 T 19-04-2016 IPR000014 PAS domain AMED_3591 92ced370174159949e0a81887b90e2a7 502 Pfam PF01739 CheR methyltransferase, SAM binding domain 78 268 2.2E-52 T 19-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMED_3591 92ced370174159949e0a81887b90e2a7 502 SUPERFAMILY SSF47757 8 80 1.57E-13 T 19-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMED_3591 92ced370174159949e0a81887b90e2a7 502 Pfam PF03705 CheR methyltransferase, all-alpha domain 14 64 7.9E-16 T 19-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMED_3591 92ced370174159949e0a81887b90e2a7 502 SMART SM00138 12 273 6.5E-78 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PANTHER PTHR24422 6 491 8.9E-96 T 19-04-2016 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PRINTS PR00996 Glutamate methyltransferase family signature 147 163 3.3E-30 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PRINTS PR00996 Glutamate methyltransferase family signature 232 255 3.3E-30 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PRINTS PR00996 Glutamate methyltransferase family signature 34 47 3.3E-30 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PRINTS PR00996 Glutamate methyltransferase family signature 71 83 3.3E-30 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PRINTS PR00996 Glutamate methyltransferase family signature 111 131 3.3E-30 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 PRINTS PR00996 Glutamate methyltransferase family signature 213 227 3.3E-30 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_3591 92ced370174159949e0a81887b90e2a7 502 Gene3D G3DSA:1.10.155.10 10 75 2.4E-15 T 19-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMED_3591 92ced370174159949e0a81887b90e2a7 502 PANTHER PTHR24422:SF6 6 491 8.9E-96 T 19-04-2016 AMED_3591 92ced370174159949e0a81887b90e2a7 502 Pfam PF00989 PAS fold 305 413 3.1E-5 T 19-04-2016 IPR013767 PAS fold GO:0006355 AMED_3591 92ced370174159949e0a81887b90e2a7 502 Gene3D G3DSA:3.40.50.150 77 272 3.0E-60 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6484 41763c1225f900e782ce37f539531d08 137 Gene3D G3DSA:3.30.750.24 22 126 5.3E-21 T 19-04-2016 IPR002645 STAS domain AMED_6484 41763c1225f900e782ce37f539531d08 137 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 21 121 4.3E-15 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_6484 41763c1225f900e782ce37f539531d08 137 SUPERFAMILY SSF52091 22 130 2.16E-17 T 19-04-2016 IPR002645 STAS domain AMED_6484 41763c1225f900e782ce37f539531d08 137 Pfam PF01740 STAS domain 27 126 1.2E-10 T 19-04-2016 IPR002645 STAS domain AMED_6484 41763c1225f900e782ce37f539531d08 137 PANTHER PTHR33495 6 134 1.4E-18 T 19-04-2016 AMED_6484 41763c1225f900e782ce37f539531d08 137 PANTHER PTHR33495:SF2 6 134 1.4E-18 T 19-04-2016 AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 PANTHER PTHR12526:SF320 1 408 6.2E-94 T 19-04-2016 AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 Gene3D G3DSA:3.40.50.2000 22 188 1.0E-7 T 19-04-2016 AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 Pfam PF13439 Glycosyltransferase Family 4 15 196 2.8E-33 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 Pfam PF00534 Glycosyl transferases group 1 216 374 2.9E-40 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 PANTHER PTHR12526 1 408 6.2E-94 T 19-04-2016 AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 SUPERFAMILY SSF53756 1 396 1.34E-96 T 19-04-2016 AMED_1646 cf6c35c9eb5235efa5c6a7dcaa57419b 425 Gene3D G3DSA:3.40.50.2000 189 372 1.6E-43 T 19-04-2016 AMED_7758 5dae2caacae03702930128a75c6fcd85 255 PANTHER PTHR11941:SF28 5 253 6.9E-91 T 19-04-2016 AMED_7758 5dae2caacae03702930128a75c6fcd85 255 Gene3D G3DSA:3.90.226.10 1 254 6.8E-62 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7758 5dae2caacae03702930128a75c6fcd85 255 PANTHER PTHR11941 5 253 6.9E-91 T 19-04-2016 AMED_7758 5dae2caacae03702930128a75c6fcd85 255 SUPERFAMILY SSF52096 2 255 1.81E-67 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7758 5dae2caacae03702930128a75c6fcd85 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 255 3.0E-49 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 Pfam PF13377 Periplasmic binding protein-like domain 193 350 3.3E-32 T 19-04-2016 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 Gene3D G3DSA:3.40.50.2300 197 328 9.8E-45 T 19-04-2016 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 ProSitePatterns PS00356 LacI-type HTH domain signature. 20 38 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 SMART SM00354 17 87 2.8E-26 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 Gene3D G3DSA:1.10.260.40 18 70 8.7E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 SUPERFAMILY SSF53822 76 354 4.52E-64 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5072 4233fe493fc92af7f7235173ff048b66 374 Pfam PF00356 Bacterial regulatory proteins, lacI family 19 64 2.4E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 Gene3D G3DSA:3.40.50.2300 71 196 9.6E-30 T 19-04-2016 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 PANTHER PTHR30146 17 354 1.5E-87 T 19-04-2016 AMED_5072 4233fe493fc92af7f7235173ff048b66 374 SUPERFAMILY SSF47413 17 73 9.09E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2111 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 5.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 5.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 5.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 248 1.6E-58 T 19-04-2016 AMED_2111 17d925e076493c13652d5a27fd49de75 251 PANTHER PTHR24322:SF366 153 185 1.7E-59 T 19-04-2016 AMED_2111 17d925e076493c13652d5a27fd49de75 251 PANTHER PTHR24322:SF366 14 137 1.7E-59 T 19-04-2016 AMED_2111 17d925e076493c13652d5a27fd49de75 251 PANTHER PTHR24322 153 185 1.7E-59 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 PANTHER PTHR24322 14 137 1.7E-59 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2111 17d925e076493c13652d5a27fd49de75 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2111 17d925e076493c13652d5a27fd49de75 251 SUPERFAMILY SSF51735 8 248 9.4E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2111 17d925e076493c13652d5a27fd49de75 251 Gene3D G3DSA:3.40.50.720 6 248 3.8E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2111 17d925e076493c13652d5a27fd49de75 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 184 1.4E-4 T 19-04-2016 AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 Gene3D G3DSA:1.10.530.10 70 198 4.7E-14 T 19-04-2016 AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 PANTHER PTHR21666 206 331 6.6E-30 T 19-04-2016 AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 Pfam PF00877 NlpC/P60 family 223 318 6.2E-23 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 SUPERFAMILY SSF54001 205 319 2.26E-35 T 19-04-2016 AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 Gene3D G3DSA:3.90.1720.10 207 319 1.3E-38 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 Pfam PF01464 Transglycosylase SLT domain 113 199 4.2E-7 T 19-04-2016 IPR008258 Transglycosylase SLT domain 1 AMED_7298 7d1eea6d0678e42b1b52869e5c3b2b96 331 SUPERFAMILY SSF53955 69 200 7.5E-19 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 Pfam PF00248 Aldo/keto reductase family 17 288 5.3E-43 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 Gene3D G3DSA:3.20.20.100 11 289 4.9E-58 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 PANTHER PTHR11732:SF136 2 288 1.1E-117 T 19-04-2016 AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 PRINTS PR00069 Aldo-keto reductase signature 148 165 1.2E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 PRINTS PR00069 Aldo-keto reductase signature 41 65 1.2E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 PRINTS PR00069 Aldo-keto reductase signature 222 246 1.2E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 PANTHER PTHR11732 2 288 1.1E-117 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_3077 a23221c39ba2b4b9e00dfbcf52371194 298 SUPERFAMILY SSF51430 11 288 1.13E-57 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1297 298d747e52db8b862ad35a26ea28869c 828 PANTHER PTHR10169:SF48 522 773 1.1E-221 T 19-04-2016 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 SMART SM00434 26 482 4.3E-237 T 19-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 PANTHER PTHR10169:SF48 22 504 1.1E-221 T 19-04-2016 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:3.30.1360.40 250 350 2.1E-24 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:2.120.10.90 524 780 4.6E-39 T 19-04-2016 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 PANTHER PTHR10169 22 504 1.1E-221 T 19-04-2016 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 SUPERFAMILY SSF101904 524 788 7.59E-41 T 19-04-2016 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 SUPERFAMILY SSF56719 46 504 1.31E-156 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 47 485 9.0E-144 T 19-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 750 778 8.7E-4 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 686 727 6.0 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 PANTHER PTHR10169 522 773 1.1E-221 T 19-04-2016 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:3.90.199.10 351 416 5.3E-107 T 19-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 AMED_1297 298d747e52db8b862ad35a26ea28869c 828 Gene3D G3DSA:3.90.199.10 46 249 5.3E-107 T 19-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 AMED_5060 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 SUPERFAMILY SSF52129 18 191 2.82E-7 T 19-04-2016 IPR029030 Caspase-like domain AMED_5060 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 Pfam PF00656 Caspase domain 19 118 2.0E-6 T 19-04-2016 AMED_5060 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 Gene3D G3DSA:2.120.10.30 315 443 6.6E-5 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_5060 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 Gene3D G3DSA:3.40.50.1460 11 108 8.5E-5 T 19-04-2016 IPR029030 Caspase-like domain AMED_5060 1b2a14cec3ea58c262c5d99ae9f0bd1d 452 ProSitePatterns PS00018 EF-hand calcium-binding domain. 160 172 - T 19-04-2016 IPR018247 EF-Hand 1, calcium-binding site AMED_0545 bff37267ab2df19d48bcfd39f3d00bd8 218 SUPERFAMILY SSF88713 41 165 5.28E-25 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_0545 bff37267ab2df19d48bcfd39f3d00bd8 218 Pfam PF01522 Polysaccharide deacetylase 44 165 8.0E-20 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_0545 bff37267ab2df19d48bcfd39f3d00bd8 218 Gene3D G3DSA:3.20.20.370 42 171 1.8E-20 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_0545 bff37267ab2df19d48bcfd39f3d00bd8 218 PANTHER PTHR10587 47 170 2.6E-13 T 19-04-2016 AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 PANTHER PTHR31126:SF21 1 97 2.5E-23 T 19-04-2016 AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 149 159 - T 19-04-2016 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 Gene3D G3DSA:3.90.190.10 136 192 1.8E-17 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 Gene3D G3DSA:3.90.190.10 36 97 1.8E-17 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 SUPERFAMILY SSF52799 1 248 1.94E-32 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 PANTHER PTHR31126 1 97 2.5E-23 T 19-04-2016 AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 PANTHER PTHR31126 119 194 2.5E-23 T 19-04-2016 AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 Pfam PF13350 Tyrosine phosphatase family 2 249 5.9E-45 T 19-04-2016 IPR026893 Tyrosine/serine-protein phosphatase IphP-type AMED_9056 2386b3eb9c99206991898fceac9c8a8c 252 PANTHER PTHR31126:SF21 119 194 2.5E-23 T 19-04-2016 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 PIRSF PIRSF005578 1 264 1.3E-95 T 19-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 SUPERFAMILY SSF53335 61 245 9.14E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 Pfam PF01728 FtsJ-like methyltransferase 63 245 3.7E-21 T 19-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 6 239 2.0E-60 T 19-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 PANTHER PTHR32319:SF0 1 267 2.7E-119 T 19-04-2016 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 Gene3D G3DSA:3.40.50.150 94 172 1.2E-5 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 Pfam PF01479 S4 domain 6 50 5.6E-8 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 Gene3D G3DSA:3.10.290.10 6 93 3.5E-23 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 SUPERFAMILY SSF55174 5 58 1.91E-11 T 19-04-2016 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 PANTHER PTHR32319 1 267 2.7E-119 T 19-04-2016 AMED_6028 9f4465bb063b6775264f3a5537d2f530 275 SMART SM00363 5 71 7.4E-6 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 SUPERFAMILY SSF88946 31 126 2.49E-28 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 229 241 1.8E-13 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 261 272 1.8E-13 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 81 94 1.8E-13 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PRINTS PR00046 Major sigma-70 factor signature 246 261 1.8E-13 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 Pfam PF04539 Sigma-70 region 3 136 210 8.4E-8 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 246 272 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PIRSF PIRSF000770 31 281 3.6E-61 T 19-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 81 94 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 50 276 7.4E-36 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 Gene3D G3DSA:1.10.10.10 126 170 8.7E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PANTHER PTHR30385:SF7 37 276 3.8E-68 T 19-04-2016 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 SUPERFAMILY SSF88659 127 204 4.36E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 SUPERFAMILY SSF88659 192 278 5.42E-23 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 Gene3D G3DSA:1.10.601.10 47 121 1.7E-19 T 19-04-2016 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 Pfam PF04542 Sigma-70 region 2 54 126 4.9E-18 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 Pfam PF04545 Sigma-70, region 4 225 274 4.9E-18 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 Gene3D G3DSA:1.10.10.10 214 276 6.3E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 54 276 7.7E-84 T 19-04-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AMED_1971 580dc5b9b29567798c23d92fd1ebe8f4 282 PANTHER PTHR30385 37 276 3.8E-68 T 19-04-2016 AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 Gene3D G3DSA:3.30.70.920 51 137 8.2E-23 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 PANTHER PTHR30154:SF2 1 140 3.3E-42 T 19-04-2016 AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 14 25 2.1E-7 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 25 44 2.1E-7 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 SUPERFAMILY SSF46785 1 57 4.5E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 SMART SM00344 1 105 5.7E-34 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 16 42 - T 19-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 Gene3D G3DSA:1.10.10.10 1 50 2.4E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 SUPERFAMILY SSF54909 58 140 1.17E-17 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 Pfam PF13404 AsnC-type helix-turn-helix domain 1 39 2.8E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 Pfam PF01037 Lrp/AsnC ligand binding domain 64 135 1.4E-18 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0503 c76b2c25ff2d95b2ef89bdc8f77b66b2 154 PANTHER PTHR30154 1 140 3.3E-42 T 19-04-2016 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 Gene3D G3DSA:3.40.50.170 33 161 1.9E-15 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 SUPERFAMILY SSF52096 286 539 6.01E-30 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 SUPERFAMILY SSF50486 172 249 2.55E-13 T 19-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 SUPERFAMILY SSF53328 2 160 3.66E-23 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 Gene3D G3DSA:3.10.25.10 174 248 5.5E-11 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 PIRSF PIRSF006787 1 555 3.5E-191 T 19-04-2016 IPR009188 [NiFe]-hydrogenase maturation factor, HypX/HoxX type AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 Pfam PF02911 Formyl transferase, C-terminal domain 172 249 4.7E-11 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 PANTHER PTHR11138:SF1 301 556 1.6E-155 T 19-04-2016 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 PANTHER PTHR11138:SF1 13 248 1.6E-155 T 19-04-2016 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 Pfam PF00378 Enoyl-CoA hydratase/isomerase 313 485 1.2E-17 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 PANTHER PTHR11138 301 556 1.6E-155 T 19-04-2016 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 PANTHER PTHR11138 13 248 1.6E-155 T 19-04-2016 AMED_3937 3d46a4fef00c865a9046aad7266fc9bd 563 Gene3D G3DSA:3.90.226.10 287 501 5.6E-23 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 367 1.4E-26 T 19-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.30.310.50 369 450 6.1E-21 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PANTHER PTHR22573 7 451 4.1E-166 T 19-04-2016 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 217 1.1E-21 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.1E-21 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.1E-21 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.1E-21 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.40.120.10 250 367 3.5E-38 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 450 1.6E-13 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.40.120.10 172 249 6.8E-31 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF53738 259 362 7.46E-31 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF55957 367 451 1.7E-18 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 8 133 2.4E-31 T 19-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF53738 7 123 5.49E-31 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Gene3D G3DSA:3.40.120.10 9 124 6.2E-30 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 SUPERFAMILY SSF53738 154 255 4.32E-29 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 PANTHER PTHR22573:SF28 7 451 4.1E-166 T 19-04-2016 AMED_8015 38c7ce393cd7d05748ec8ac78cd7c8f0 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 155 253 1.5E-24 T 19-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 341 357 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 187 202 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 322 337 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 280 295 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 55 72 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 132 151 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PRINTS PR00742 Glycosyl hydrolase family 35 signature 77 95 1.5E-24 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:3.20.20.80 42 375 7.6E-105 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF49785 773 942 5.95E-32 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.102.20.10 380 439 6.4E-62 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.102.20.10 575 692 6.4E-62 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF117100 690 769 6.02E-13 T 19-04-2016 IPR025972 Beta-galactosidase, domain 3 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PANTHER PTHR23421 562 617 7.3E-136 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PANTHER PTHR23421 1 419 7.3E-136 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 1123 1189 3.0E-8 T 19-04-2016 IPR018905 Alpha-galactosidase, NEW3 domain AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.60.390.10 693 768 1.1E-14 T 19-04-2016 IPR025972 Beta-galactosidase, domain 3 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF10435 Beta-galactosidase, domain 2 574 698 3.1E-23 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF51445 42 365 8.52E-94 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PANTHER PTHR23421:SF64 562 617 7.3E-136 T 19-04-2016 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 PANTHER PTHR23421:SF64 1 419 7.3E-136 T 19-04-2016 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF08305 NPCBM/NEW2 domain 1225 1363 5.2E-44 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF01301 Glycosyl hydrolases family 35 51 367 2.1E-92 T 19-04-2016 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF49785 1222 1362 3.36E-39 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SMART SM01029 517 698 6.3E-35 T 19-04-2016 IPR018954 Beta-galactosidase, domain 2 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF49785 945 1087 1.11E-38 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF13363 Beta-galactosidase, domain 3 704 764 2.2E-8 T 19-04-2016 IPR025972 Beta-galactosidase, domain 3 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.60.120.260 789 948 2.9E-49 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Gene3D G3DSA:2.60.120.260 949 1101 3.5E-47 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SUPERFAMILY SSF51011 542 686 3.67E-25 T 19-04-2016 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF13364 Beta-galactosidase jelly roll domain 795 903 6.4E-25 T 19-04-2016 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 Pfam PF13364 Beta-galactosidase jelly roll domain 958 1066 2.4E-32 T 19-04-2016 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4388 c5c3472e5d6ec113c300dd00ce69c36d 1370 SMART SM00776 1219 1364 2.9E-53 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 PANTHER PTHR18919 1 398 6.8E-198 T 19-04-2016 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 Gene3D G3DSA:3.40.47.10 3 126 9.7E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 Gene3D G3DSA:3.40.47.10 188 280 9.7E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 Gene3D G3DSA:3.40.47.10 150 187 6.0E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 Gene3D G3DSA:3.40.47.10 281 396 6.0E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 PANTHER PTHR18919:SF71 1 398 6.8E-198 T 19-04-2016 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 SUPERFAMILY SSF53901 275 396 6.32E-42 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 Pfam PF02803 Thiolase, C-terminal domain 274 396 3.3E-43 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 395 1.6E-138 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 SUPERFAMILY SSF53901 1 271 3.51E-76 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 PIRSF PIRSF000429 1 398 5.1E-122 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 ProSitePatterns PS00737 Thiolases signature 2. 343 359 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_4613 a884063d68f0f3a884b17da6a0fb67ce 398 Pfam PF00108 Thiolase, N-terminal domain 5 266 1.7E-67 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 PANTHER PTHR26402:SF564 2 216 1.2E-80 T 19-04-2016 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 PANTHER PTHR26402 2 216 1.2E-80 T 19-04-2016 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 SUPERFAMILY SSF46894 148 216 1.7E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 SMART SM00421 153 210 5.1E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 Gene3D G3DSA:3.40.50.2300 2 124 4.7E-33 T 19-04-2016 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 9.5E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 Pfam PF00072 Response regulator receiver domain 4 118 1.5E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 4.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 4.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 4.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 SUPERFAMILY SSF52172 2 133 8.25E-31 T 19-04-2016 IPR011006 CheY-like superfamily AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 Gene3D G3DSA:1.10.10.10 125 216 8.4E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9272 cba3e29fd9b216e17ba51a24ae8b15dc 217 SMART SM00448 2 117 1.7E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 Gene3D G3DSA:3.50.50.60 265 340 1.8E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 Gene3D G3DSA:3.50.50.60 1 169 1.8E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 PANTHER PTHR13789:SF251 1 367 5.6E-72 T 19-04-2016 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 PANTHER PTHR13789 1 367 5.6E-72 T 19-04-2016 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 SUPERFAMILY SSF51905 264 367 8.5E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 SUPERFAMILY SSF51905 1 164 8.5E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5672 5edda3e7b1066d97cc6003d137dd40e9 395 Pfam PF01494 FAD binding domain 107 312 6.7E-12 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_8868 b5b4905789b8fcc60a99c2e0661129d6 208 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 4 184 4.7E-33 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_8868 b5b4905789b8fcc60a99c2e0661129d6 208 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 5 146 6.3E-7 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_8868 b5b4905789b8fcc60a99c2e0661129d6 208 SUPERFAMILY SSF109854 3 113 8.24E-9 T 19-04-2016 AMED_8868 b5b4905789b8fcc60a99c2e0661129d6 208 TIGRFAM TIGR03085 TIGR03085: TIGR03085 family protein 5 201 1.1E-66 T 19-04-2016 IPR017519 Conserved hypothetical protein CHP03085 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF02785 Biotin carboxylase C-terminal domain 338 444 3.1E-34 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Gene3D G3DSA:3.30.1490.20 130 202 9.9E-25 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.4E-44 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Gene3D G3DSA:3.30.470.20 204 450 6.1E-99 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Gene3D G3DSA:2.40.50.100 584 654 1.6E-22 T 19-04-2016 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF51230 582 654 1.44E-20 T 19-04-2016 IPR011053 Single hybrid motif AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF00364 Biotin-requiring enzyme 589 653 2.1E-16 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 PANTHER PTHR18866:SF102 1 658 0.0 T 19-04-2016 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 288 295 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 PANTHER PTHR18866 1 658 0.0 T 19-04-2016 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 SMART SM00878 338 444 6.3E-51 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF56059 83 350 1.57E-66 T 19-04-2016 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 611 628 - T 19-04-2016 IPR001882 Biotin-binding site AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Gene3D G3DSA:3.40.50.20 1 129 4.7E-50 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 324 7.4E-77 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF51246 333 449 3.35E-37 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_7921 d4a1fba178a6a64dd4d19b13c5a346d9 661 SUPERFAMILY SSF52440 1 113 2.59E-46 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 Gene3D G3DSA:3.40.50.1000 4 204 1.3E-37 T 19-04-2016 IPR023214 HAD-like domain AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 SUPERFAMILY SSF56784 3 206 4.14E-49 T 19-04-2016 IPR023214 HAD-like domain AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 184 6.7E-18 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PANTHER PTHR18901:SF34 4 205 5.8E-59 T 19-04-2016 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 184 4.9E-34 T 19-04-2016 IPR023214 HAD-like domain AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PANTHER PTHR18901 4 205 5.8E-59 T 19-04-2016 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.9E-7 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 1.9E-7 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 1.9E-7 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.9E-7 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7674 9eb7aeed88bfba0faade90605a28e1ff 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 1.9E-7 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 140 185 7.2E-8 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 40 82 1.5E-7 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 298 334 4.5E-6 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 243 285 4.1E-7 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 192 233 1.5E-5 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 90 131 1.1E-6 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1084 1122 0.0026 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 799 834 4.0E-6 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 551 588 3.3E-7 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 874 915 3.7E-7 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1042 1078 4.6E-4 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 938 975 1.6E-6 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 782 816 1.4E-5 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 539 570 2.3E-6 T 19-04-2016 IPR006530 YD repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1325 1391 1.1E-18 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Gene3D G3DSA:2.130.10.30 2 341 1.6E-81 T 19-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 537 566 2.1E-7 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 782 815 9.3E-7 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 799 835 2.7E-7 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 938 971 5.5E-7 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 551 585 1.1E-10 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 1022 1056 3.2E-10 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 Pfam PF05593 RHS Repeat 874 911 2.2E-6 T 19-04-2016 IPR031325 RHS repeat AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 43 59 3.0E-7 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 91 107 3.0E-7 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 143 157 3.0E-7 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 289 310 3.0E-7 T 19-04-2016 IPR000408 Regulator of chromosome condensation, RCC1 AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 SUPERFAMILY SSF50985 2 341 6.02E-79 T 19-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II AMED_7297 4983a577ba97b21341f3fc084b1c72ee 1532 PANTHER PTHR22870 1 341 1.5E-75 T 19-04-2016 AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 PANTHER PTHR11959 22 399 1.2E-165 T 19-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 SUPERFAMILY SSF54593 30 386 1.52E-88 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 39 399 1.4E-128 T 19-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 Gene3D G3DSA:3.10.180.10 204 399 3.2E-79 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 PIRSF PIRSF009283 27 399 3.9E-129 T 19-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 Gene3D G3DSA:3.10.180.10 31 203 4.5E-44 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 210 353 1.3E-13 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_8095 5b8f5285665af30fa73ebbd634d68256 399 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 41 149 7.0E-7 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 SUPERFAMILY SSF56801 18 217 2.88E-144 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 SUPERFAMILY SSF56801 249 555 2.88E-144 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 Gene3D G3DSA:3.40.50.980 26 191 6.7E-36 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 543 2.7E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 PANTHER PTHR24096 12 226 1.6E-169 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 PANTHER PTHR24096 247 554 1.6E-169 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 Gene3D G3DSA:3.40.50.980 192 377 1.7E-35 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 Pfam PF00501 AMP-binding enzyme 32 459 5.5E-98 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 Gene3D G3DSA:2.30.38.10 378 455 2.7E-27 T 19-04-2016 AMED_0996 63954e55cc5598830f3dfe61e23cae7e 558 Gene3D G3DSA:3.30.300.30 461 554 1.9E-25 T 19-04-2016 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PANTHER PTHR19370 1 232 7.9E-51 T 19-04-2016 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 Gene3D G3DSA:3.40.50.80 104 207 3.1E-22 T 19-04-2016 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 Gene3D G3DSA:3.10.20.30 208 308 8.3E-26 T 19-04-2016 IPR012675 Beta-grasp domain AMED_1999 715f8254a80b9b850c37c863b98650e3 310 SUPERFAMILY SSF54292 202 308 5.24E-26 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 SUPERFAMILY SSF52343 93 219 1.57E-25 T 19-04-2016 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 Pfam PF00970 Oxidoreductase FAD-binding domain 16 99 1.1E-4 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_1999 715f8254a80b9b850c37c863b98650e3 310 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 259 267 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PANTHER PTHR19370:SF113 1 232 7.9E-51 T 19-04-2016 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 235 300 1.5E-10 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 Gene3D G3DSA:2.40.30.10 2 94 1.4E-25 T 19-04-2016 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 Pfam PF00175 Oxidoreductase NAD-binding domain 107 195 1.9E-4 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 26 36 8.4E-23 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 131 140 8.4E-23 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 36 48 8.4E-23 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 106 125 8.4E-23 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 71 85 8.4E-23 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 PRINTS PR00409 Phthalate dioxygenase reductase family signature 182 190 8.4E-23 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_1999 715f8254a80b9b850c37c863b98650e3 310 SUPERFAMILY SSF63380 2 94 5.21E-21 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_1928 e5933b955cc119b7ac9c620ae7fd6fec 149 TIGRFAM TIGR03180 UraD_2: OHCU decarboxylase 8 147 3.8E-42 T 19-04-2016 IPR017595 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2 AMED_1928 e5933b955cc119b7ac9c620ae7fd6fec 149 Pfam PF09349 OHCU decarboxylase 7 144 1.0E-29 T 19-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 AMED_1928 e5933b955cc119b7ac9c620ae7fd6fec 149 Gene3D G3DSA:1.10.3330.10 14 148 5.1E-36 T 19-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 AMED_1928 e5933b955cc119b7ac9c620ae7fd6fec 149 SUPERFAMILY SSF158694 12 147 2.49E-36 T 19-04-2016 AMED_2599 180f3f5121d58003abd9729921d56083 735 SMART SM00642 256 628 2.6E-8 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2599 180f3f5121d58003abd9729921d56083 735 PANTHER PTHR10357:SF160 52 726 0.0 T 19-04-2016 AMED_2599 180f3f5121d58003abd9729921d56083 735 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 103 727 45.177 T 19-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_2599 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:3.20.20.80 250 612 2.3E-93 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2599 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF51011 624 725 2.88E-34 T 19-04-2016 AMED_2599 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:2.60.40.1180 624 725 2.6E-41 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_2599 180f3f5121d58003abd9729921d56083 735 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 629 724 1.6E-21 T 19-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 AMED_2599 180f3f5121d58003abd9729921d56083 735 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 127 213 7.5E-22 T 19-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 AMED_2599 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF51445 186 617 1.87E-115 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2599 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:2.60.40.10 21 108 2.7E-14 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2599 180f3f5121d58003abd9729921d56083 735 Gene3D G3DSA:2.60.40.10 115 227 6.2E-39 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2599 180f3f5121d58003abd9729921d56083 735 PIRSF PIRSF000463 15 732 2.8E-291 T 19-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_2599 180f3f5121d58003abd9729921d56083 735 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 111 724 1.2E-287 T 19-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_2599 180f3f5121d58003abd9729921d56083 735 Pfam PF00128 Alpha amylase, catalytic domain 273 347 1.8E-8 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2599 180f3f5121d58003abd9729921d56083 735 PANTHER PTHR10357 52 726 0.0 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2599 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF81296 22 116 2.45E-17 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_2599 180f3f5121d58003abd9729921d56083 735 SUPERFAMILY SSF81296 145 206 1.89E-10 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 Pfam PF13305 WHG domain 79 161 6.0E-17 T 19-04-2016 IPR025996 WHG domain AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 6.2E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 Gene3D G3DSA:1.10.357.10 3 185 1.2E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 SUPERFAMILY SSF46689 3 65 7.7E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 PANTHER PTHR30055 3 163 1.7E-24 T 19-04-2016 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 PANTHER PTHR30055:SF23 3 163 1.7E-24 T 19-04-2016 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 4.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8272 baf3932ccb9f0d73e185923094078ee2 195 SUPERFAMILY SSF48498 75 184 8.48E-20 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4700 ea5a43671ee413379e8aecb060c328f9 111 Gene3D G3DSA:3.30.70.1060 1 109 4.2E-37 T 19-04-2016 AMED_4700 ea5a43671ee413379e8aecb060c328f9 111 PANTHER PTHR35174 2 110 1.1E-27 T 19-04-2016 AMED_4700 ea5a43671ee413379e8aecb060c328f9 111 Pfam PF03795 YCII-related domain 1 104 1.3E-18 T 19-04-2016 IPR005545 YCII-related AMED_4700 ea5a43671ee413379e8aecb060c328f9 111 SUPERFAMILY SSF54909 1 109 5.09E-30 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Gene3D G3DSA:3.10.196.10 958 1183 2.8E-63 T 19-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 SUPERFAMILY SSF47644 636 719 1.7E-23 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Gene3D G3DSA:3.20.20.330 6 347 5.0E-106 T 19-04-2016 IPR003726 Homocysteine-binding domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 SUPERFAMILY SSF56507 901 1184 2.75E-85 T 19-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 PANTHER PTHR21091 11 377 1.3E-115 T 19-04-2016 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Pfam PF00809 Pterin binding enzyme 343 579 2.0E-45 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 974 1183 2.6E-30 T 19-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 PANTHER PTHR21091:SF97 11 377 1.3E-115 T 19-04-2016 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Pfam PF02607 B12 binding domain 641 713 3.9E-24 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Gene3D G3DSA:1.10.1240.10 632 717 1.9E-30 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 SUPERFAMILY SSF82282 7 382 3.92E-106 T 19-04-2016 IPR003726 Homocysteine-binding domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Pfam PF02574 Homocysteine S-methyltransferase 18 308 1.3E-66 T 19-04-2016 IPR003726 Homocysteine-binding domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Gene3D G3DSA:3.40.50.280 723 868 2.4E-47 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 PIRSF PIRSF000381 3 1184 0.0 T 19-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 SUPERFAMILY SSF51717 340 611 1.7E-75 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 SUPERFAMILY SSF52242 720 857 1.57E-38 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 SMART SM01018 638 720 6.8E-39 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 TIGRFAM TIGR02082 metH: methionine synthase 14 1183 0.0 T 19-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Gene3D G3DSA:3.20.20.20 348 609 1.9E-84 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_4919 39958dfea3785ea5ade4a509998477b0 1184 Pfam PF02310 B12 binding domain 726 844 4.5E-19 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 SUPERFAMILY SSF69572 136 279 2.55E-8 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 367 690 2.9E-101 T 19-04-2016 IPR003776 YcaO-like domain AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 TIGRFAM TIGR03882 cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain 159 325 2.4E-45 T 19-04-2016 IPR022291 Bacteriocin biosynthesis, cyclodehydratase domain AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 Gene3D G3DSA:3.40.50.720 136 275 8.0E-9 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 PANTHER PTHR37809 92 726 4.3E-61 T 19-04-2016 AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 367 723 4.1E-79 T 19-04-2016 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component AMED_5949 a0e2215d886aca41c7e1de95705c35a4 727 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 365 689 1.7E-30 T 19-04-2016 IPR003776 YcaO-like domain AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 Gene3D G3DSA:3.30.450.40 44 196 6.2E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 Pfam PF03861 ANTAR domain 200 252 7.8E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 SMART SM01012 198 253 1.2E-23 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 SUPERFAMILY SSF55781 50 195 4.58E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 PIRSF PIRSF036625 16 262 5.8E-55 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 Gene3D G3DSA:1.10.10.10 201 256 3.9E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 Pfam PF13185 GAF domain 43 186 1.5E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5216 f2fdb6ce072ece7096876e569015fa91 266 SUPERFAMILY SSF52172 178 252 1.24E-11 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Gene3D G3DSA:1.10.10.10 2 67 2.7E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SMART SM00345 4 63 2.0E-19 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 PANTHER PTHR11751 2 98 3.1E-23 T 19-04-2016 AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Gene3D G3DSA:1.20.120.530 79 212 1.6E-33 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Pfam PF07729 FCD domain 81 201 5.4E-27 T 19-04-2016 IPR011711 GntR, C-terminal AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SUPERFAMILY SSF46785 2 67 1.06E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SUPERFAMILY SSF48008 78 209 7.59E-30 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 53 4.6E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 23 37 4.6E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 SMART SM00895 81 202 3.2E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_2152 9eb5ac28aa51c834f2d2bd7b16b2d012 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 63 8.1E-19 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6489 5af42a8eba48bd426421cbb2b3acc9e7 312 PANTHER PTHR24220:SF523 3 217 1.5E-110 T 19-04-2016 AMED_6489 5af42a8eba48bd426421cbb2b3acc9e7 312 Pfam PF00005 ABC transporter 18 156 3.9E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6489 5af42a8eba48bd426421cbb2b3acc9e7 312 SUPERFAMILY SSF52540 2 220 1.41E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6489 5af42a8eba48bd426421cbb2b3acc9e7 312 PANTHER PTHR24220 3 217 1.5E-110 T 19-04-2016 AMED_6489 5af42a8eba48bd426421cbb2b3acc9e7 312 SMART SM00382 26 204 1.2E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6489 5af42a8eba48bd426421cbb2b3acc9e7 312 Gene3D G3DSA:3.40.50.300 1 221 2.9E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 42 89 1.3E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 SMART SM00866 105 241 5.2E-24 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 SUPERFAMILY SSF64288 77 248 2.67E-34 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 Gene3D G3DSA:3.40.1410.10 86 247 1.1E-33 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 PANTHER PTHR11751 25 118 5.2E-17 T 19-04-2016 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 PANTHER PTHR11751:SF333 25 118 5.2E-17 T 19-04-2016 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 Gene3D G3DSA:1.10.10.10 23 85 2.2E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 SMART SM00345 32 89 2.2E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 Pfam PF07702 UTRA domain 109 240 2.8E-25 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 SUPERFAMILY SSF46785 23 99 9.85E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 63 79 2.7E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2563 1fbc17c44f920b557cd4d0fae65bb848 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 63 2.7E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 SUPERFAMILY SSF54826 1 115 2.47E-16 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 SUPERFAMILY SSF51604 100 368 6.19E-56 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 PANTHER PTHR13794 1 368 1.1E-55 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 Gene3D G3DSA:3.30.390.10 1 114 1.2E-22 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 112 1.7E-4 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 Gene3D G3DSA:3.20.20.120 115 368 1.7E-60 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 Pfam PF13378 Enolase C-terminal domain-like 135 362 7.3E-52 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 SMART SM00922 130 235 2.5E-16 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_6209 6104a83852e0b2b4c930613b20fc7363 369 PANTHER PTHR13794:SF4 1 368 1.1E-55 T 19-04-2016 AMED_8379 53882c28d782b166f07f1b15ea97e172 611 SUPERFAMILY SSF50370 489 608 1.15E-36 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8379 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:2.80.10.50 489 609 1.1E-38 T 19-04-2016 AMED_8379 53882c28d782b166f07f1b15ea97e172 611 PANTHER PTHR11069 58 480 4.6E-90 T 19-04-2016 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 AMED_8379 53882c28d782b166f07f1b15ea97e172 611 Pfam PF00652 Ricin-type beta-trefoil lectin domain 487 607 3.1E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8379 53882c28d782b166f07f1b15ea97e172 611 SMART SM00458 486 610 7.9E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8379 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:3.20.20.80 49 405 1.6E-118 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8379 53882c28d782b166f07f1b15ea97e172 611 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 412 471 2.8E-12 T 19-04-2016 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain AMED_8379 53882c28d782b166f07f1b15ea97e172 611 Gene3D G3DSA:2.60.40.1180 406 473 6.6E-18 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_8379 53882c28d782b166f07f1b15ea97e172 611 SUPERFAMILY SSF51445 72 413 3.84E-64 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8379 53882c28d782b166f07f1b15ea97e172 611 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 74 373 2.4E-34 T 19-04-2016 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain AMED_8379 53882c28d782b166f07f1b15ea97e172 611 SUPERFAMILY SSF51011 409 473 6.55E-7 T 19-04-2016 AMED_0019 c3aeb4f71c743b998cd1541048a76fa7 383 Gene3D G3DSA:1.25.40.10 150 220 9.7E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0019 c3aeb4f71c743b998cd1541048a76fa7 383 SUPERFAMILY SSF47413 3 64 1.31E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0019 c3aeb4f71c743b998cd1541048a76fa7 383 Gene3D G3DSA:1.10.260.40 2 63 1.8E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0019 c3aeb4f71c743b998cd1541048a76fa7 383 SMART SM00530 7 63 6.6E-10 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0019 c3aeb4f71c743b998cd1541048a76fa7 383 Pfam PF13560 Helix-turn-helix domain 4 61 1.2E-11 T 19-04-2016 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 Gene3D G3DSA:1.10.390.10 332 461 5.1E-23 T 19-04-2016 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 PANTHER PTHR11533 36 462 1.9E-62 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 Pfam PF01433 Peptidase family M1 51 366 1.2E-31 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 PANTHER PTHR11533:SF163 36 462 1.9E-62 T 19-04-2016 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 SUPERFAMILY SSF55486 257 461 3.08E-46 T 19-04-2016 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 SUPERFAMILY SSF63737 34 229 3.92E-31 T 19-04-2016 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 317 332 1.9E-8 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 336 348 1.9E-8 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_1413 c45b42d4c5646910bf6d1c31d720a837 462 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 166 181 1.9E-8 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_2745 dce860de73d770999076bd64f6d0bec1 204 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 14 191 35.271 T 19-04-2016 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMED_2745 dce860de73d770999076bd64f6d0bec1 204 PANTHER PTHR11608 11 193 7.8E-80 T 19-04-2016 AMED_2745 dce860de73d770999076bd64f6d0bec1 204 Pfam PF00156 Phosphoribosyl transferase domain 16 161 1.7E-20 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_2745 dce860de73d770999076bd64f6d0bec1 204 SUPERFAMILY SSF53271 16 185 2.49E-41 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_2745 dce860de73d770999076bd64f6d0bec1 204 Gene3D G3DSA:3.40.50.2020 15 185 1.8E-47 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 ProSitePatterns PS00512 Alpha-galactosidase signature. 67 83 - T 19-04-2016 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 Pfam PF00652 Ricin-type beta-trefoil lectin domain 396 520 5.1E-22 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 Pfam PF16499 Alpha galactosidase A 31 359 4.1E-92 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 SMART SM00458 394 523 1.5E-24 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 SUPERFAMILY SSF51445 23 297 1.74E-98 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 SUPERFAMILY SSF51011 299 385 3.84E-19 T 19-04-2016 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PANTHER PTHR11452 1 384 5.0E-175 T 19-04-2016 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 SUPERFAMILY SSF50370 394 522 1.01E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:2.80.10.50 399 522 2.4E-32 T 19-04-2016 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:3.20.20.70 23 292 1.6E-120 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 26 45 3.2E-52 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 168 186 3.2E-52 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 253 274 3.2E-52 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 62 77 3.2E-52 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 103 124 3.2E-52 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 PRINTS PR00740 Glycosyl hydrolase family 27 signature 137 154 3.2E-52 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1923 b68463f9bf973d5b3429ce8ed545ebdb 525 Gene3D G3DSA:2.60.40.1180 293 386 1.7E-22 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 Pfam PF00551 Formyl transferase 1 170 3.8E-30 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 PANTHER PTHR11138 1 303 6.1E-64 T 19-04-2016 AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 Gene3D G3DSA:3.10.25.10 206 306 9.6E-17 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 SUPERFAMILY SSF50486 206 307 7.22E-17 T 19-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 Pfam PF02911 Formyl transferase, C-terminal domain 205 305 3.1E-14 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 SUPERFAMILY SSF53328 1 202 3.27E-56 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_5040 7b50d7f201e3abe313835f44367e4d8f 314 Gene3D G3DSA:3.40.50.170 1 202 3.0E-51 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 201 34.333 T 19-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 Pfam PF01479 S4 domain 92 137 2.2E-18 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 SMART SM01390 3 90 5.7E-42 T 19-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 201 1.7E-76 T 19-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 PANTHER PTHR11831:SF4 1 201 2.6E-75 T 19-04-2016 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 Gene3D G3DSA:1.10.1050.10 1 93 6.0E-38 T 19-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 SMART SM00363 91 157 7.2E-14 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 PANTHER PTHR11831 1 201 2.6E-75 T 19-04-2016 IPR022801 Ribosomal protein S4/S9 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 ProSitePatterns PS00632 Ribosomal protein S4 signature. 89 113 - T 19-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 90 4.9E-27 T 19-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 SUPERFAMILY SSF55174 3 201 6.15E-65 T 19-04-2016 AMED_0707 099f87d6fb2efd973e360cdf23b2a66a 201 Gene3D G3DSA:3.10.290.10 94 193 1.5E-27 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_2982 1b598066b8ee6e85637d9dda703eb9c4 106 Pfam PF12680 SnoaL-like domain 16 97 9.2E-11 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_2982 1b598066b8ee6e85637d9dda703eb9c4 106 Gene3D G3DSA:3.10.450.50 1 99 1.5E-11 T 19-04-2016 IPR032710 NTF2-like domain AMED_2982 1b598066b8ee6e85637d9dda703eb9c4 106 SUPERFAMILY SSF54427 1 105 1.13E-22 T 19-04-2016 IPR032710 NTF2-like domain AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF52440 1 112 2.01E-41 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 PANTHER PTHR18866 1 1125 0.0 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF51569 517 829 9.71E-76 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.10.600.10 959 1046 2.5E-31 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF56059 84 358 1.63E-69 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF02436 Conserved carboxylase domain 821 1008 1.6E-55 T 19-04-2016 IPR003379 Carboxylase, conserved domain AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.30.1490.20 131 201 5.1E-24 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF51246 334 451 3.3E-37 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF02785 Biotin carboxylase C-terminal domain 339 447 8.4E-34 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 PIRSF PIRSF001594 1 1125 0.0 T 19-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 4 1125 0.0 T 19-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.4E-40 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 323 3.1E-71 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.30.470.20 205 451 2.8E-100 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF00364 Biotin-requiring enzyme 1066 1124 3.3E-11 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF89000 826 991 5.89E-41 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:2.40.50.100 1050 1125 4.5E-19 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SMART SM00878 339 446 1.0E-54 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 PANTHER PTHR18866:SF103 1 1125 0.0 T 19-04-2016 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.40.50.20 1 130 8.2E-46 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 SUPERFAMILY SSF51230 1048 1125 8.25E-16 T 19-04-2016 IPR011053 Single hybrid motif AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Pfam PF00682 HMGL-like 527 796 1.1E-28 T 19-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMED_1761 3f3334ef69243e28db8593c1127e8d4b 1125 Gene3D G3DSA:3.20.20.70 503 812 2.6E-128 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8409 355848e947924d4e02ae713765917d7e 261 PANTHER PTHR32243:SF31 1 260 8.0E-90 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_8409 355848e947924d4e02ae713765917d7e 261 Gene3D G3DSA:1.10.3720.10 2 247 2.3E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8409 355848e947924d4e02ae713765917d7e 261 PANTHER PTHR32243 1 260 8.0E-90 T 19-04-2016 AMED_8409 355848e947924d4e02ae713765917d7e 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 253 7.8E-21 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8409 355848e947924d4e02ae713765917d7e 261 SUPERFAMILY SSF161098 2 257 1.01E-56 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8798 423f8b8d4719dca78cbfd2f19d566c15 738 PIRSF PIRSF001265 1 699 1.3E-246 T 19-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 AMED_8798 423f8b8d4719dca78cbfd2f19d566c15 738 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 691 23.793 T 19-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 AMED_8798 423f8b8d4719dca78cbfd2f19d566c15 738 PANTHER PTHR31998:SF0 1 706 4.9E-296 T 19-04-2016 AMED_8798 423f8b8d4719dca78cbfd2f19d566c15 738 Pfam PF03030 Inorganic H+ pyrophosphatase 5 686 5.3E-240 T 19-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 AMED_8798 423f8b8d4719dca78cbfd2f19d566c15 738 PANTHER PTHR31998 1 706 4.9E-296 T 19-04-2016 AMED_8798 423f8b8d4719dca78cbfd2f19d566c15 738 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 1 692 1.2E-205 T 19-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 PANTHER PTHR30328 7 185 1.9E-22 T 19-04-2016 AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 SUPERFAMILY SSF46689 5 69 6.14E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 Gene3D G3DSA:1.10.357.10 5 180 1.2E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 SUPERFAMILY SSF48498 82 163 1.24E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4590 7d4730023eaa4a2fd814d9af12e66e30 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 3.9E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2986 131d399acb8854f5104411c936f690cb 236 Pfam PF04248 Domain of unknown function (DUF427) 129 216 3.1E-27 T 19-04-2016 IPR007361 Domain of unknown function DUF427 AMED_2986 131d399acb8854f5104411c936f690cb 236 Pfam PF04248 Domain of unknown function (DUF427) 8 95 2.4E-16 T 19-04-2016 IPR007361 Domain of unknown function DUF427 AMED_2986 131d399acb8854f5104411c936f690cb 236 PANTHER PTHR34310 14 235 1.7E-70 T 19-04-2016 AMED_2986 131d399acb8854f5104411c936f690cb 236 PANTHER PTHR34310:SF4 14 235 1.7E-70 T 19-04-2016 AMED_7549 fc357a44de311d11f55afb165f966868 280 SUPERFAMILY SSF55021 2 78 9.58E-14 T 19-04-2016 AMED_7549 fc357a44de311d11f55afb165f966868 280 Gene3D G3DSA:3.30.70.260 3 79 2.5E-19 T 19-04-2016 AMED_7549 fc357a44de311d11f55afb165f966868 280 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 279 43.896 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 SUPERFAMILY SSF53328 85 280 4.19E-64 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_7549 fc357a44de311d11f55afb165f966868 280 PIRSF PIRSF036480 1 280 7.5E-107 T 19-04-2016 AMED_7549 fc357a44de311d11f55afb165f966868 280 Gene3D G3DSA:3.40.50.170 84 275 1.5E-58 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_7549 fc357a44de311d11f55afb165f966868 280 PANTHER PTHR10520:SF7 5 273 6.7E-139 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PANTHER PTHR10520 5 273 6.7E-139 T 19-04-2016 AMED_7549 fc357a44de311d11f55afb165f966868 280 Pfam PF00551 Formyl transferase 85 261 1.3E-39 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_7549 fc357a44de311d11f55afb165f966868 280 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 4 279 2.1E-97 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 107 134 1.6E-51 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 85 107 1.6E-51 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 231 253 1.6E-51 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 5 31 1.6E-51 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 253 278 1.6E-51 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_7549 fc357a44de311d11f55afb165f966868 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 37 49 1.6E-51 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0558 cf509f9fde0d9a370baeb437b691af75 204 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 7 94 1.6E-15 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_0558 cf509f9fde0d9a370baeb437b691af75 204 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 6 186 6.1E-25 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_0558 cf509f9fde0d9a370baeb437b691af75 204 Gene3D G3DSA:1.20.120.450 4 91 2.0E-8 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_0558 cf509f9fde0d9a370baeb437b691af75 204 SUPERFAMILY SSF109854 4 125 6.71E-16 T 19-04-2016 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 SUPERFAMILY SSF56014 92 187 1.31E-6 T 19-04-2016 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 27 70 1.0E-12 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 PANTHER PTHR32439 9 356 6.2E-53 T 19-04-2016 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 SUPERFAMILY SSF55124 6 84 7.03E-19 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 PANTHER PTHR32439:SF3 9 356 6.2E-53 T 19-04-2016 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 SUPERFAMILY SSF55124 179 275 3.93E-14 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 Gene3D G3DSA:3.90.480.10 21 87 2.0E-19 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_7063 f38ea6444c93843dff884ebdfd5670c5 358 Gene3D G3DSA:3.90.480.10 219 275 2.0E-19 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF08659 KR domain 1829 2003 2.6E-55 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF08659 KR domain 4307 4473 4.0E-43 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 2107 2177 1.4E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 544 614 4.1E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 3079 3154 6.4E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:1.10.1200.10 4579 4652 5.6E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 2712 2835 3.5E-74 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 2901 3008 3.5E-74 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 1330 1423 3.92E-66 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 1142 1268 3.92E-66 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 4573 4658 4.06E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.70.250 3818 3882 2.8E-9 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.70.250 1267 1328 1.3E-7 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.70.250 2840 2900 6.0E-7 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00501 AMP-binding enzyme 15 411 2.3E-109 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.720 2091 2106 3.4E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.720 1829 2007 3.4E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 541 647 4.06E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00698 Acyl transferase domain 3694 4007 2.7E-83 T 19-04-2016 IPR014043 Acyl transferase AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00698 Acyl transferase domain 2717 3024 3.6E-53 T 19-04-2016 IPR014043 Acyl transferase AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00698 Acyl transferase domain 1144 1452 5.0E-82 T 19-04-2016 IPR014043 Acyl transferase AMED_0617 8946089cba314005a91a04a986406c20 4735 PANTHER PTHR11712:SF242 519 2173 0.0 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 PANTHER PTHR11712:SF242 4727 4735 0.0 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 2452 2567 6.5E-45 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 3430 3545 1.2E-44 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 888 1003 1.4E-45 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 3077 3187 8.11E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 3082 3154 1.8E-28 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 546 614 8.1E-23 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 4581 4653 1.7E-26 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00823 Phosphopantetheine attachment site 2105 2177 2.1E-27 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 2107 2173 2.6E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 548 610 5.0E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 3084 3150 5.3E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00550 Phosphopantetheine attachment site 4584 4649 1.0E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 3551 3642 4.1E-11 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1006 1104 2.5E-12 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2570 2685 2.2E-15 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00825 Beta-ketoacyl synthase 3174 3598 6.1E-218 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00825 Beta-ketoacyl synthase 2197 2620 5.2E-214 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00825 Beta-ketoacyl synthase 634 1056 3.6E-221 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF47336 2101 2210 1.31E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF55048 3818 3883 1.7E-13 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF55048 1267 1329 1.44E-11 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4608 4623 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 629 994 2.88E-104 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 3168 3434 1.3E-91 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 2595 2616 3.38E-100 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 2192 2563 3.38E-100 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 1827 2052 5.54E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 4096 4295 5.42E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 3883 4001 6.3E-73 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 1329 1446 1.0E-71 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 3683 3814 6.3E-73 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.366.10 1137 1263 1.0E-71 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 3884 3977 3.66E-67 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 3692 3819 3.66E-67 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2132 2147 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00826 1489 1634 1.5E-24 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.30.300.30 406 501 1.6E-26 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.980 9 169 7.3E-39 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 2902 3002 4.97E-69 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF52151 2713 2841 4.97E-69 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.720 4307 4478 4.5E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0617 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 3335 3351 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0617 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 793 809 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 494 1.1E-17 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2195 2444 4.5E-89 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3172 3422 1.2E-90 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0617 8946089cba314005a91a04a986406c20 4735 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 632 880 1.7E-89 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF56801 8 507 7.2E-154 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF55048 2840 2901 2.62E-12 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1146 1433 2.6E-112 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2717 3006 2.7E-119 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 3696 3988 1.4E-115 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0617 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 2357 2373 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1829 2005 3.7E-57 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4307 4475 2.1E-27 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 2197 2456 3.2E-88 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 634 892 4.2E-91 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 3435 3598 5.3E-64 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 893 1058 2.0E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.47.10 2457 2619 5.1E-65 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 4304 4543 1.15E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:2.30.38.10 328 402 4.0E-30 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 PANTHER PTHR11712 519 2173 0.0 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 PANTHER PTHR11712 4727 4735 0.0 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 SMART SM01294 4582 4649 4.8E-4 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 Gene3D G3DSA:3.40.50.980 170 324 5.9E-35 T 19-04-2016 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF53901 3170 3542 8.84E-103 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0617 8946089cba314005a91a04a986406c20 4735 SUPERFAMILY SSF51735 1701 1817 4.72E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4518 755122c9e1635208f7b089456a969d71 421 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 149 410 0.0064 T 19-04-2016 IPR020803 Polyketide synthase, methyltransferase domain AMED_4518 755122c9e1635208f7b089456a969d71 421 PANTHER PTHR10108:SF743 383 418 5.1E-101 T 19-04-2016 AMED_4518 755122c9e1635208f7b089456a969d71 421 SUPERFAMILY SSF53335 141 404 8.91E-72 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4518 755122c9e1635208f7b089456a969d71 421 PANTHER PTHR10108:SF743 63 359 5.1E-101 T 19-04-2016 AMED_4518 755122c9e1635208f7b089456a969d71 421 Pfam PF02353 Mycolic acid cyclopropane synthetase 130 400 1.1E-96 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4518 755122c9e1635208f7b089456a969d71 421 PIRSF PIRSF003085 6 419 4.1E-127 T 19-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AMED_4518 755122c9e1635208f7b089456a969d71 421 Gene3D G3DSA:3.40.50.150 130 401 3.9E-88 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4518 755122c9e1635208f7b089456a969d71 421 PANTHER PTHR10108 383 418 5.1E-101 T 19-04-2016 AMED_4518 755122c9e1635208f7b089456a969d71 421 PANTHER PTHR10108 63 359 5.1E-101 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 Gene3D G3DSA:3.40.50.980 13 166 2.3E-36 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 492 3.3E-20 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3270 257555dd8789783793c6264121b119a0 511 SUPERFAMILY SSF56801 9 504 4.71E-147 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 Gene3D G3DSA:2.30.38.10 327 401 8.2E-20 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 PANTHER PTHR24096 8 499 2.3E-158 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 Gene3D G3DSA:3.40.50.980 167 319 3.0E-41 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 Pfam PF00501 AMP-binding enzyme 14 408 4.1E-92 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3270 257555dd8789783793c6264121b119a0 511 Gene3D G3DSA:3.30.300.30 403 502 2.6E-33 T 19-04-2016 AMED_3270 257555dd8789783793c6264121b119a0 511 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3270 257555dd8789783793c6264121b119a0 511 PANTHER PTHR24096:SF240 8 499 2.3E-158 T 19-04-2016 AMED_5210 d6192878c18efa5941e9b7195a455cf3 321 Gene3D G3DSA:3.20.20.30 1 320 6.2E-66 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5210 d6192878c18efa5941e9b7195a455cf3 321 SUPERFAMILY SSF51679 1 320 6.62E-61 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5210 d6192878c18efa5941e9b7195a455cf3 321 TIGRFAM TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family 3 320 1.4E-144 T 19-04-2016 IPR019945 F420-dependent glucose-6-phosphate dehydrogenase-related AMED_5210 d6192878c18efa5941e9b7195a455cf3 321 PANTHER PTHR30011 3 320 5.3E-85 T 19-04-2016 AMED_5210 d6192878c18efa5941e9b7195a455cf3 321 PANTHER PTHR30011:SF27 3 320 5.3E-85 T 19-04-2016 AMED_5210 d6192878c18efa5941e9b7195a455cf3 321 Pfam PF00296 Luciferase-like monooxygenase 1 292 4.7E-48 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 SUPERFAMILY SSF52540 35 223 1.18E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 Pfam PF01926 50S ribosome-binding GTPase 40 175 3.1E-10 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 PRINTS PR00195 Dynamin signature 38 56 2.1E-5 T 19-04-2016 IPR022812 Dynamin superfamily AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 PRINTS PR00195 Dynamin signature 194 210 2.1E-5 T 19-04-2016 IPR022812 Dynamin superfamily AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 PRINTS PR00195 Dynamin signature 127 144 2.1E-5 T 19-04-2016 IPR022812 Dynamin superfamily AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 Gene3D G3DSA:3.40.50.300 35 81 2.7E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5170 9c92f66f3e18af4869c308143bfb68ee 490 Gene3D G3DSA:3.40.50.300 131 218 2.7E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4662 16c740166b58e3c8808035b31740bfa3 636 PANTHER PTHR11731 5 13 8.5E-140 T 19-04-2016 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 PANTHER PTHR11731:SF75 32 635 8.5E-140 T 19-04-2016 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 PANTHER PTHR11731:SF75 5 13 8.5E-140 T 19-04-2016 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 Gene3D G3DSA:3.40.50.1820 306 620 6.4E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4662 16c740166b58e3c8808035b31740bfa3 636 SUPERFAMILY SSF69304 82 197 6.02E-7 T 19-04-2016 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 SUPERFAMILY SSF69304 242 331 6.02E-7 T 19-04-2016 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 Gene3D G3DSA:2.130.10.10 144 305 1.9E-5 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 SUPERFAMILY SSF53474 366 622 4.88E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4662 16c740166b58e3c8808035b31740bfa3 636 Pfam PF00326 Prolyl oligopeptidase family 418 623 1.6E-44 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_4662 16c740166b58e3c8808035b31740bfa3 636 PANTHER PTHR11731 32 635 8.5E-140 T 19-04-2016 AMED_3449 1a428f6030dc347691003e31e887a21b 748 Gene3D G3DSA:2.120.10.30 11 462 2.1E-82 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_3449 1a428f6030dc347691003e31e887a21b 748 SMART SM00089 463 550 5.8E-10 T 19-04-2016 IPR022409 PKD/Chitinase domain AMED_3449 1a428f6030dc347691003e31e887a21b 748 SUPERFAMILY SSF49299 459 549 1.31E-15 T 19-04-2016 IPR000601 PKD domain AMED_3449 1a428f6030dc347691003e31e887a21b 748 SUPERFAMILY SSF50952 18 190 1.83E-23 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_3449 1a428f6030dc347691003e31e887a21b 748 SUPERFAMILY SSF50952 240 456 1.83E-23 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_3449 1a428f6030dc347691003e31e887a21b 748 Gene3D G3DSA:2.60.40.670 463 548 1.3E-15 T 19-04-2016 IPR000601 PKD domain AMED_3449 1a428f6030dc347691003e31e887a21b 748 PANTHER PTHR19328 232 456 2.4E-60 T 19-04-2016 AMED_3449 1a428f6030dc347691003e31e887a21b 748 PANTHER PTHR19328 19 205 2.4E-60 T 19-04-2016 AMED_3449 1a428f6030dc347691003e31e887a21b 748 Pfam PF07995 Glucose / Sorbosone dehydrogenase 36 190 2.1E-11 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_3449 1a428f6030dc347691003e31e887a21b 748 Pfam PF07995 Glucose / Sorbosone dehydrogenase 231 408 9.4E-12 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 Gene3D G3DSA:3.40.50.2300 172 311 5.2E-27 T 19-04-2016 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 Gene3D G3DSA:3.40.50.2300 54 171 4.4E-23 T 19-04-2016 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 Gene3D G3DSA:1.10.260.40 2 53 1.9E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 Pfam PF13377 Periplasmic binding protein-like domain 168 330 2.3E-30 T 19-04-2016 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 4.0E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 SUPERFAMILY SSF53822 58 324 3.64E-36 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 SMART SM00354 1 71 3.5E-21 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 PANTHER PTHR30146:SF48 1 334 4.3E-74 T 19-04-2016 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 PANTHER PTHR30146 1 334 4.3E-74 T 19-04-2016 AMED_4347 49fb4ee29d2e8199c2edc107b37f4767 335 SUPERFAMILY SSF47413 2 60 3.1E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 PANTHER PTHR10949 2 291 9.4E-141 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 14 50 6.4E-8 T 19-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 TIGRFAM TIGR00510 lipA: lipoyl synthase 8 293 3.7E-99 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 Gene3D G3DSA:3.20.20.70 29 293 5.4E-66 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 Pfam PF04055 Radical SAM superfamily 71 224 2.6E-12 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 Hamap MF_00206 Lipoyl synthase [lipA]. 1 297 140.459 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 SMART SM00729 61 267 1.2E-12 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 SUPERFAMILY SSF102114 25 286 2.62E-61 T 19-04-2016 AMED_2159 7f761dc358432adfa63dd0944f93ed27 323 PIRSF PIRSF005963 2 308 3.2E-120 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_1219 9ef6b775a1d1390aabc32ad13ab1e35a 426 Pfam PF07690 Major Facilitator Superfamily 22 354 1.3E-27 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1219 9ef6b775a1d1390aabc32ad13ab1e35a 426 PANTHER PTHR11360:SF115 10 420 4.0E-122 T 19-04-2016 AMED_1219 9ef6b775a1d1390aabc32ad13ab1e35a 426 PANTHER PTHR11360 10 420 4.0E-122 T 19-04-2016 AMED_1219 9ef6b775a1d1390aabc32ad13ab1e35a 426 Gene3D G3DSA:1.20.1250.20 233 418 2.1E-18 T 19-04-2016 AMED_1219 9ef6b775a1d1390aabc32ad13ab1e35a 426 Gene3D G3DSA:1.20.1250.20 13 200 4.3E-21 T 19-04-2016 AMED_1219 9ef6b775a1d1390aabc32ad13ab1e35a 426 SUPERFAMILY SSF103473 7 420 3.66E-57 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7453 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 PANTHER PTHR13600 3 274 2.1E-133 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_7453 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 Pfam PF04072 Leucine carboxyl methyltransferase 21 196 8.7E-60 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_7453 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 Gene3D G3DSA:3.40.50.150 24 209 1.7E-14 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7453 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 SUPERFAMILY SSF53335 17 297 1.96E-72 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7453 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 PANTHER PTHR13600:SF16 3 274 2.1E-133 T 19-04-2016 AMED_7453 5a0cf3d68bbdfa1f2f3d6a2a47b026be 305 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 19 277 5.4E-77 T 19-04-2016 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 SUPERFAMILY SSF52172 3 126 4.84E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 PANTHER PTHR26402:SF564 3 211 2.5E-83 T 19-04-2016 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 SMART SM00421 148 205 7.4E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 SMART SM00448 3 116 4.0E-33 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 1.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 1.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 1.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 Gene3D G3DSA:3.40.50.2300 3 119 2.1E-36 T 19-04-2016 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 PANTHER PTHR26402 3 211 2.5E-83 T 19-04-2016 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 Gene3D G3DSA:1.10.10.10 120 213 3.4E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 Pfam PF00072 Response regulator receiver domain 5 116 1.7E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 2.4E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2769 9f61f203a14f85edd41b7f18862f1a60 219 SUPERFAMILY SSF46894 144 212 5.44E-22 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1311 305d56d3153d022abdce71ee6041689c 334 PANTHER PTHR30146 2 331 1.3E-104 T 19-04-2016 AMED_1311 305d56d3153d022abdce71ee6041689c 334 Gene3D G3DSA:3.40.50.2300 173 311 1.3E-49 T 19-04-2016 AMED_1311 305d56d3153d022abdce71ee6041689c 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1311 305d56d3153d022abdce71ee6041689c 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 6.1E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1311 305d56d3153d022abdce71ee6041689c 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 6.1E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1311 305d56d3153d022abdce71ee6041689c 334 SMART SM00354 2 72 3.6E-21 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1311 305d56d3153d022abdce71ee6041689c 334 SUPERFAMILY SSF53822 63 332 5.65E-64 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1311 305d56d3153d022abdce71ee6041689c 334 Pfam PF13377 Periplasmic binding protein-like domain 168 331 6.7E-38 T 19-04-2016 AMED_1311 305d56d3153d022abdce71ee6041689c 334 Gene3D G3DSA:1.10.260.40 3 54 1.3E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1311 305d56d3153d022abdce71ee6041689c 334 SUPERFAMILY SSF47413 3 60 1.86E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1311 305d56d3153d022abdce71ee6041689c 334 PANTHER PTHR30146:SF30 2 331 1.3E-104 T 19-04-2016 AMED_1311 305d56d3153d022abdce71ee6041689c 334 Gene3D G3DSA:3.40.50.2300 55 172 1.1E-31 T 19-04-2016 AMED_1311 305d56d3153d022abdce71ee6041689c 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 2.0E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3495 3818c12d820f5edb10e4ca86270052bf 330 SUPERFAMILY SSF51679 7 43 1.2E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3495 3818c12d820f5edb10e4ca86270052bf 330 SUPERFAMILY SSF51679 70 328 1.2E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3495 3818c12d820f5edb10e4ca86270052bf 330 Pfam PF00296 Luciferase-like monooxygenase 14 263 5.5E-35 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3495 3818c12d820f5edb10e4ca86270052bf 330 Gene3D G3DSA:3.20.20.30 1 328 3.7E-61 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3495 3818c12d820f5edb10e4ca86270052bf 330 PANTHER PTHR30011:SF5 5 265 3.7E-33 T 19-04-2016 AMED_3495 3818c12d820f5edb10e4ca86270052bf 330 PANTHER PTHR30011 5 265 3.7E-33 T 19-04-2016 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 PANTHER PTHR36923:SF1 1 63 3.8E-17 T 19-04-2016 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 3.0E-12 T 19-04-2016 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 SUPERFAMILY SSF54862 2 62 5.35E-11 T 19-04-2016 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 PANTHER PTHR36923 1 63 3.8E-17 T 19-04-2016 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 2.9E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 2.9E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 2.9E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7021 f93a36ba24fd392c430827bbc7e2cdcd 65 Gene3D G3DSA:3.30.70.20 1 62 3.9E-14 T 19-04-2016 AMED_4921 bb843c2f705e91fbdd0a774c88f4d50c 301 PIRSF PIRSF016839 1 301 5.1E-82 T 19-04-2016 AMED_4921 bb843c2f705e91fbdd0a774c88f4d50c 301 Gene3D G3DSA:3.20.20.140 1 299 7.9E-76 T 19-04-2016 AMED_4921 bb843c2f705e91fbdd0a774c88f4d50c 301 PANTHER PTHR10819 1 301 6.0E-67 T 19-04-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 AMED_4921 bb843c2f705e91fbdd0a774c88f4d50c 301 Pfam PF02126 Phosphotriesterase family 5 296 5.6E-34 T 19-04-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 AMED_4921 bb843c2f705e91fbdd0a774c88f4d50c 301 SUPERFAMILY SSF51556 1 299 5.53E-57 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_5978 82ba668e27f891d73c03e833f845fcfe 220 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 39 2.7E-5 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_5978 82ba668e27f891d73c03e833f845fcfe 220 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 137 169 2.3 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_5978 82ba668e27f891d73c03e833f845fcfe 220 Gene3D G3DSA:1.10.1780.10 10 171 5.2E-19 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_5978 82ba668e27f891d73c03e833f845fcfe 220 SUPERFAMILY SSF81923 7 38 2.62E-5 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_1858 a1cd1183e09036fb22330a87643555c9 252 Gene3D G3DSA:3.40.810.20 4 246 7.2E-92 T 19-04-2016 AMED_1858 a1cd1183e09036fb22330a87643555c9 252 SUPERFAMILY SSF100950 5 247 6.98E-70 T 19-04-2016 AMED_1858 a1cd1183e09036fb22330a87643555c9 252 Pfam PF01144 Coenzyme A transferase 9 214 4.5E-38 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_1858 a1cd1183e09036fb22330a87643555c9 252 PANTHER PTHR13707:SF35 1 238 1.3E-86 T 19-04-2016 AMED_1858 a1cd1183e09036fb22330a87643555c9 252 SMART SM00882 9 219 8.2E-34 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_1858 a1cd1183e09036fb22330a87643555c9 252 PANTHER PTHR13707 1 238 1.3E-86 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_3996 662a8ef305a7db61886fc74321887938 348 Gene3D G3DSA:3.90.180.10 10 178 4.1E-55 T 19-04-2016 IPR011032 GroES-like AMED_3996 662a8ef305a7db61886fc74321887938 348 SUPERFAMILY SSF50129 7 188 6.76E-44 T 19-04-2016 IPR011032 GroES-like AMED_3996 662a8ef305a7db61886fc74321887938 348 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_3996 662a8ef305a7db61886fc74321887938 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 141 1.0E-25 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3996 662a8ef305a7db61886fc74321887938 348 SMART SM00829 10 338 2.0E-4 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3996 662a8ef305a7db61886fc74321887938 348 SUPERFAMILY SSF51735 146 308 3.32E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3996 662a8ef305a7db61886fc74321887938 348 Gene3D G3DSA:3.40.50.720 179 284 6.5E-18 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3996 662a8ef305a7db61886fc74321887938 348 PANTHER PTHR11695:SF261 16 348 1.1E-125 T 19-04-2016 AMED_3996 662a8ef305a7db61886fc74321887938 348 PANTHER PTHR11695 16 348 1.1E-125 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3996 662a8ef305a7db61886fc74321887938 348 Pfam PF00107 Zinc-binding dehydrogenase 183 301 3.5E-13 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_8631 98710ba41c1dbfa47310b1c805a95365 95 Pfam PF00741 Gas vesicle protein 50 87 6.5E-13 T 19-04-2016 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 AMED_7418 0a6a5ef102b289133063832840efc4bd 313 PANTHER PTHR30193:SF1 1 313 9.0E-138 T 19-04-2016 AMED_7418 0a6a5ef102b289133063832840efc4bd 313 PANTHER PTHR30193 1 313 9.0E-138 T 19-04-2016 AMED_7418 0a6a5ef102b289133063832840efc4bd 313 Gene3D G3DSA:1.10.3720.10 18 299 2.4E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7418 0a6a5ef102b289133063832840efc4bd 313 SUPERFAMILY SSF160964 27 65 5.89E-6 T 19-04-2016 AMED_7418 0a6a5ef102b289133063832840efc4bd 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 298 4.0E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7418 0a6a5ef102b289133063832840efc4bd 313 SUPERFAMILY SSF161098 68 296 1.7E-51 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6385 7080afa0c0b3b5d6fbe61638f9e32a06 199 Gene3D G3DSA:3.40.430.10 8 197 5.5E-25 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_6385 7080afa0c0b3b5d6fbe61638f9e32a06 199 Pfam PF01872 RibD C-terminal domain 9 185 1.4E-20 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_6385 7080afa0c0b3b5d6fbe61638f9e32a06 199 SUPERFAMILY SSF53597 8 195 9.69E-22 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_6385 7080afa0c0b3b5d6fbe61638f9e32a06 199 PANTHER PTHR38011 7 199 7.5E-23 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 515 578 5.5E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 5895 5958 7.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 1556 1616 5.3E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 3004 3063 1.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00550 Phosphopantetheine attachment site 4446 4505 1.1E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 1547 1616 3.66E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 3007 3067 2.7E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 5897 5961 1.8E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 4449 4509 9.1E-28 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 1559 1619 1.4E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:1.10.1200.10 517 582 1.4E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13745 HxxPF-repeated domain 905 991 2.5E-20 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3230 3458 3.22E-38 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3670 3929 2.78E-57 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 43 431 7.7E-125 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2510 2924 1.1E-114 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3958 4306 2.2E-102 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5418 5803 5.5E-131 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1065 1414 2.7E-100 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 4671 4906 2.0E-43 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095:SF173 191 669 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095:SF173 4885 4898 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095:SF173 4333 4499 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095:SF173 3467 4310 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095:SF173 4915 5867 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 5398 5779 4.7E-93 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 3941 4345 3.0E-84 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 23 407 2.1E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 1044 1452 9.4E-80 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00501 AMP-binding enzyme 2490 2900 9.0E-82 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 5356 5906 1.44E-157 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 5121 5384 1.56E-60 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 1554 1622 5.7E-5 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 513 582 2.5E-10 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 5893 5962 0.0057 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 4444 4512 1.2E-5 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SMART SM00823 Phosphopantetheine attachment site 3002 3070 8.5E-6 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:2.30.38.10 2793 2863 1.1E-23 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:2.30.38.10 5692 5769 2.5E-28 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:2.30.38.10 1344 1414 3.7E-24 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:2.30.38.10 323 396 2.0E-20 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:2.30.38.10 4237 4308 8.0E-25 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 402 516 1.9E-41 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 4340 4448 3.0E-42 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 1447 1558 1.9E-40 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 2895 3006 1.4E-38 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.300.30 5774 5896 7.8E-37 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 4518 4683 5.19E-30 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3026 3041 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 537 552 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1578 1593 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4468 4483 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 2450 3015 3.27E-136 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 1004 1567 1.96E-145 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 2051 2240 2.11E-41 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 2994 3063 2.49E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 506 578 2.62E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 771 1013 1.22E-53 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 4436 4505 8.24E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 1778 2021 1.56E-39 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4070 4081 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5532 5543 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1181 1192 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2626 2637 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 1037 1203 9.2E-49 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 16 180 5.2E-43 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 3934 4093 3.6E-42 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 5392 5553 1.7E-46 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 2483 2649 1.3E-40 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 1632 1701 1.9E-9 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 4523 4585 6.4E-7 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 3084 3143 5.5E-6 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 1711 1889 7.0E-32 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 597 881 1.6E-69 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 4938 5234 1.4E-56 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 3490 3780 4.2E-60 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 4597 4788 4.1E-37 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 2053 2339 1.2E-53 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF00668 Condensation domain 3155 3339 3.3E-32 T 19-04-2016 IPR001242 Condensation domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 600 763 6.67E-48 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SMART SM01294 514 578 0.0025 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3488 3683 1.78E-43 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 1637 1776 4.89E-31 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 181 322 3.7E-36 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 1204 1343 4.6E-25 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 2651 2792 1.1E-33 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 5554 5691 2.1E-38 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.40.50.980 4094 4236 4.2E-31 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095 191 669 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095 4885 4898 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095 4333 4499 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095 3467 4310 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 PANTHER PTHR24095 4915 5867 0.0 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 4793 4930 2.0E-32 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3346 3482 1.3E-36 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1900 2045 5.6E-37 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 2225 2458 1.67E-49 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF47336 5885 5959 7.98E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 4937 5133 2.3E-41 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 5788 5867 2.0E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 2908 2977 7.1E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 1460 1529 3.2E-13 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 4353 4419 1.4E-14 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 486 1.9E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 3902 4457 3.53E-142 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 5008 5101 1.9E-5 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 3548 3659 3.6E-5 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 Gene3D G3DSA:3.30.559.10 2122 2228 3.6E-4 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF52777 3078 3216 9.64E-26 T 19-04-2016 AMED_3102 7292045a93a65e3d17beda57da7072e4 5975 SUPERFAMILY SSF56801 16 526 3.01E-146 T 19-04-2016 AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 SUPERFAMILY SSF50129 1 161 5.93E-42 T 19-04-2016 IPR011032 GroES-like AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 PANTHER PTHR11695 12 338 3.3E-141 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 SUPERFAMILY SSF51735 143 305 1.24E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 SMART SM00829 10 336 9.1E-4 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 PANTHER PTHR11695:SF601 12 338 3.3E-141 T 19-04-2016 AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Gene3D G3DSA:3.90.180.10 1 165 7.8E-36 T 19-04-2016 IPR011032 GroES-like AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 120 7.3E-21 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Gene3D G3DSA:3.40.50.720 166 283 2.9E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3724 5869d3cf8dfd5f4f8ac1f57d4c68bd93 338 Pfam PF00107 Zinc-binding dehydrogenase 173 283 4.3E-25 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_5776 5c23f82be54e232f1225e3b9cf16dac4 65 SMART SM00421 2 59 0.005 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5776 5c23f82be54e232f1225e3b9cf16dac4 65 SUPERFAMILY SSF46894 7 65 5.1E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5776 5c23f82be54e232f1225e3b9cf16dac4 65 Pfam PF00196 Bacterial regulatory proteins, luxR family 7 59 6.6E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5776 5c23f82be54e232f1225e3b9cf16dac4 65 Gene3D G3DSA:1.10.10.10 9 65 1.8E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9024 170f9cb6b6a45d3f6088b45c6414dfde 62 Pfam PF11273 Protein of unknown function (DUF3073) 2 61 8.8E-25 T 19-04-2016 IPR021426 Protein of unknown function DUF3073 AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 PANTHER PTHR34822 10 283 2.3E-48 T 19-04-2016 AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 Pfam PF04229 GrpB protein 27 184 1.8E-50 T 19-04-2016 IPR007344 GrpB/Dephospho-CoA kinase AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 SUPERFAMILY SSF81301 29 187 1.37E-47 T 19-04-2016 AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 SUPERFAMILY SSF53335 188 385 2.92E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 Gene3D G3DSA:3.40.50.150 189 380 1.8E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 Gene3D G3DSA:3.30.460.10 26 188 2.1E-52 T 19-04-2016 AMED_2717 9b616ce7c4a45f6d9439e5b3ece60abe 426 Pfam PF08241 Methyltransferase domain 229 322 5.6E-23 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_4515 89e1f1db9b7bd00d8358f200b527bf19 180 Gene3D G3DSA:3.20.20.370 3 174 4.8E-56 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_4515 89e1f1db9b7bd00d8358f200b527bf19 180 SUPERFAMILY SSF88713 3 178 6.23E-57 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_4515 89e1f1db9b7bd00d8358f200b527bf19 180 PANTHER PTHR10587 2 178 2.6E-54 T 19-04-2016 AMED_4515 89e1f1db9b7bd00d8358f200b527bf19 180 Pfam PF01522 Polysaccharide deacetylase 3 116 3.8E-32 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PANTHER PTHR30294:SF4 35 271 1.5E-46 T 19-04-2016 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PIRSF PIRSF006648 6 273 1.7E-66 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PANTHER PTHR30294 35 271 1.5E-46 T 19-04-2016 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 77 99 1.9E-9 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 1.9E-9 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 217 236 1.9E-9 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 160 184 1.9E-9 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_3028 ab8d475b0d3e419a2b6722cb363413e1 273 Pfam PF01061 ABC-2 type transporter 29 239 3.5E-39 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 SUPERFAMILY SSF46785 1 64 2.73E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 Pfam PF07729 FCD domain 87 211 6.1E-21 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 Gene3D G3DSA:1.20.120.530 81 223 1.6E-24 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 SUPERFAMILY SSF48008 84 218 5.75E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 50 1.1E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 20 34 1.1E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 1 60 6.2E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 PANTHER PTHR11751 80 102 6.6E-19 T 19-04-2016 AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 PANTHER PTHR11751 1 63 6.6E-19 T 19-04-2016 AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 SMART SM00895 86 212 8.8E-17 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 Gene3D G3DSA:1.10.10.10 1 62 4.0E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3294 d6e7b31c96cfa9222531f28a150fd1b3 228 SMART SM00345 1 60 3.6E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8383 ad1858668df2331f12256a5dcba93cf5 264 Pfam PF07286 Protein of unknown function (DUF1445) 113 255 3.2E-66 T 19-04-2016 IPR009906 Protein of unknown function DUF1445 AMED_8383 ad1858668df2331f12256a5dcba93cf5 264 PANTHER PTHR32022 1 262 3.0E-140 T 19-04-2016 AMED_8383 ad1858668df2331f12256a5dcba93cf5 264 Hamap MF_01830 UPF0317 protein . 11 263 52.43 T 19-04-2016 IPR016938 Uncharacterised protein family UPF0317 AMED_8383 ad1858668df2331f12256a5dcba93cf5 264 SUPERFAMILY SSF160920 9 255 9.02E-111 T 19-04-2016 AMED_8383 ad1858668df2331f12256a5dcba93cf5 264 Gene3D G3DSA:3.40.1640.10 4 165 1.9E-63 T 19-04-2016 AMED_8383 ad1858668df2331f12256a5dcba93cf5 264 PIRSF PIRSF029755 1 263 2.1E-117 T 19-04-2016 IPR016938 Uncharacterised protein family UPF0317 AMED_5605 b326eca2c72744643f8c9d8e22249a10 156 Pfam PF03682 Uncharacterised protein family (UPF0158) 71 138 3.2E-10 T 19-04-2016 IPR005361 Uncharacterised protein family UPF0158 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 SUPERFAMILY SSF52540 1078 1266 1.31E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 PANTHER PTHR22683:SF1 903 1191 4.0E-236 T 19-04-2016 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 PANTHER PTHR22683:SF1 1241 1332 4.0E-236 T 19-04-2016 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 PANTHER PTHR22683:SF1 10 701 4.0E-236 T 19-04-2016 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 TIGRFAM TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb 759 1331 1.1E-230 T 19-04-2016 IPR023837 EccCb-like, Actinobacteria AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 SUPERFAMILY SSF52540 776 1027 1.24E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 TIGRFAM TIGR03924 T7SS_EccC_a: type VII secretion protein EccCa 24 699 9.8E-287 T 19-04-2016 IPR023836 EccCa-like, Actinobacteria AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 Gene3D G3DSA:3.40.50.300 815 1021 3.4E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 Gene3D G3DSA:3.40.50.300 448 664 1.8E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 PANTHER PTHR22683 903 1191 4.0E-236 T 19-04-2016 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 PANTHER PTHR22683 1241 1332 4.0E-236 T 19-04-2016 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 PANTHER PTHR22683 10 701 4.0E-236 T 19-04-2016 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 Pfam PF01580 FtsK/SpoIIIE family 816 1052 8.1E-54 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 Pfam PF01580 FtsK/SpoIIIE family 450 567 3.4E-23 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_0719 44dc34cc20cc5df3a535f2f940ca80f3 1337 SUPERFAMILY SSF52540 441 702 4.69E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 53 261 1.4E-36 T 19-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 Pfam PF13531 Bacterial extracellular solute-binding protein 48 264 1.4E-38 T 19-04-2016 AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 PANTHER PTHR30632 46 268 1.1E-41 T 19-04-2016 AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 PANTHER PTHR30632:SF0 46 268 1.1E-41 T 19-04-2016 AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 Gene3D G3DSA:3.40.190.10 46 175 3.6E-37 T 19-04-2016 AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 PIRSF PIRSF004846 1 268 4.5E-60 T 19-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 AMED_8513 f76de5885569a48cdf91c952f3cf0da4 268 SUPERFAMILY SSF53850 47 266 1.43E-49 T 19-04-2016 AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 Gene3D G3DSA:3.40.50.300 382 622 1.6E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 SUPERFAMILY SSF90123 47 346 4.05E-15 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 SMART SM00382 408 604 5.4E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 ProSitePatterns PS00211 ABC transporters family signature. 526 540 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 PANTHER PTHR24221 370 637 4.0E-89 T 19-04-2016 AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 Gene3D G3DSA:1.20.1560.10 48 346 4.0E-6 T 19-04-2016 AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 SUPERFAMILY SSF52540 376 628 6.09E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8621 d4ed5b98cc273dd30638a4bb2f9cb6ec 637 Pfam PF00005 ABC transporter 399 554 4.8E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7225 f93e7d3d704cde82eb971837843ac446 61 SUPERFAMILY SSF52922 19 57 1.86E-6 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_7225 f93e7d3d704cde82eb971837843ac446 61 Gene3D G3DSA:3.40.50.920 22 57 1.1E-6 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_3098 43339507b60feb5b2e7f19751f050be0 298 Gene3D G3DSA:3.40.50.2300 135 295 5.2E-49 T 19-04-2016 AMED_3098 43339507b60feb5b2e7f19751f050be0 298 SUPERFAMILY SSF53822 27 297 4.53E-55 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3098 43339507b60feb5b2e7f19751f050be0 298 PANTHER PTHR30146 27 297 2.3E-90 T 19-04-2016 AMED_3098 43339507b60feb5b2e7f19751f050be0 298 PANTHER PTHR30146:SF34 27 297 2.3E-90 T 19-04-2016 AMED_3098 43339507b60feb5b2e7f19751f050be0 298 Pfam PF13377 Periplasmic binding protein-like domain 135 293 1.1E-31 T 19-04-2016 AMED_3098 43339507b60feb5b2e7f19751f050be0 298 Gene3D G3DSA:3.40.50.2300 27 134 2.6E-16 T 19-04-2016 AMED_5448 c530ad5b6fe9acefadeabbe9326a68da 241 Pfam PF13489 Methyltransferase domain 54 161 3.1E-13 T 19-04-2016 AMED_5448 c530ad5b6fe9acefadeabbe9326a68da 241 PANTHER PTHR10108 22 156 9.5E-14 T 19-04-2016 AMED_5448 c530ad5b6fe9acefadeabbe9326a68da 241 SUPERFAMILY SSF53335 21 170 6.29E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5448 c530ad5b6fe9acefadeabbe9326a68da 241 Gene3D G3DSA:3.40.50.150 19 183 1.0E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5448 c530ad5b6fe9acefadeabbe9326a68da 241 PANTHER PTHR10108:SF705 22 156 9.5E-14 T 19-04-2016 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 ProSitePatterns PS01236 PdxT/SNO family family signature. 44 54 - T 19-04-2016 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 7 201 38.333 T 19-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 PIRSF PIRSF005639 1 206 8.6E-73 T 19-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 7 200 3.9E-70 T 19-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 SUPERFAMILY SSF52317 6 204 5.07E-49 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 Gene3D G3DSA:3.40.50.880 4 205 1.4E-78 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 Pfam PF01174 SNO glutamine amidotransferase family 9 202 1.0E-56 T 19-04-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 PANTHER PTHR31559:SF0 6 206 1.5E-87 T 19-04-2016 AMED_5305 078a8692361fb2cde8c56afd981ce3dd 206 PANTHER PTHR31559 6 206 1.5E-87 T 19-04-2016 AMED_1249 d55bd149413961052c66e2fd5c50bcd4 166 SUPERFAMILY SSF46785 8 161 7.18E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1249 d55bd149413961052c66e2fd5c50bcd4 166 Pfam PF03551 Transcriptional regulator PadR-like family 11 81 2.3E-7 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_1249 d55bd149413961052c66e2fd5c50bcd4 166 Gene3D G3DSA:1.10.10.10 7 86 2.4E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3358 96eb1247159189934852a97a5a4275ee 287 Pfam PF01810 LysE type translocator 18 285 2.3E-25 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_3358 96eb1247159189934852a97a5a4275ee 287 PANTHER PTHR30086 185 285 1.5E-18 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_3358 96eb1247159189934852a97a5a4275ee 287 PANTHER PTHR30086 4 103 1.5E-18 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 Pfam PF08281 Sigma-70, region 4 143 195 7.4E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 Pfam PF04542 Sigma-70 region 2 45 111 2.8E-17 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 Gene3D G3DSA:1.10.1740.10 25 123 1.1E-22 T 19-04-2016 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 40 199 4.1E-24 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 PANTHER PTHR30173 15 199 2.4E-71 T 19-04-2016 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 SUPERFAMILY SSF88659 138 199 1.42E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 Gene3D G3DSA:1.10.10.10 140 200 5.3E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 SUPERFAMILY SSF88946 25 116 9.61E-22 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7499 05d25febf92d0fb4bda7de183d68f3aa 203 PANTHER PTHR30173:SF16 15 199 2.4E-71 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 37 297 2.4E-82 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 1719 1979 2.4E-89 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 3325 3586 1.7E-90 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 413 499 3.7E-11 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2093 2186 5.4E-11 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 3700 3811 5.4E-12 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:1.10.1200.10 3231 3306 2.4E-24 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:1.10.1200.10 1627 1699 1.2E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:1.10.1200.10 4932 5005 1.0E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 1203 1332 2.72E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 4655 4840 1.24E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF14765 Polyketide synthase dehydratase 4207 4480 4.1E-60 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF14765 Polyketide synthase dehydratase 923 1195 9.6E-57 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF14765 Polyketide synthase dehydratase 2592 2718 1.6E-15 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00823 Phosphopantetheine attachment site 3232 3304 1.5E-33 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00823 Phosphopantetheine attachment site 1625 1697 1.9E-30 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00823 Phosphopantetheine attachment site 4933 5005 1.2E-33 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.50.720 4657 4837 3.6E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.50.720 1346 1537 2.8E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00825 Beta-ketoacyl synthase 37 463 1.7E-200 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00825 Beta-ketoacyl synthase 1719 2143 2.3E-211 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00825 Beta-ketoacyl synthase 3325 3750 4.1E-217 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF55048 685 750 2.49E-14 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 2239 2365 4.19E-66 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 2425 2519 4.19E-66 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1717 1967 3.3E-90 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 35 285 2.0E-84 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3323 3574 1.4E-89 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 4036 4155 3.1E-69 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 2233 2360 3.0E-72 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 3836 3967 3.1E-69 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 2424 2542 3.0E-72 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 2952 3169 1.81E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1975 2090 1.2E-44 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 293 410 2.0E-43 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 3582 3697 7.0E-45 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.30.70.250 685 749 1.5E-9 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.30.70.250 2364 2416 2.2E-8 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.30.70.250 3971 4035 4.2E-8 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM01294 3233 3300 1.6E-5 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM01294 4934 5001 9.9E-5 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM01294 1633 1693 5.5E-5 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF08659 KR domain 4657 4831 4.0E-52 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF08659 KR domain 2954 3124 4.7E-45 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF08659 KR domain 1346 1517 1.2E-53 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2243 2529 5.0E-111 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 3849 4142 1.7E-109 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 563 858 1.8E-119 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00826 2592 2726 6.6E-48 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00826 4207 4369 1.4E-84 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00826 923 1085 3.2E-79 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 2818 2943 2.68E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00698 Acyl transferase domain 3847 4160 2.8E-85 T 19-04-2016 IPR014043 Acyl transferase AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00698 Acyl transferase domain 561 877 5.8E-85 T 19-04-2016 IPR014043 Acyl transferase AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00698 Acyl transferase domain 2241 2547 1.1E-78 T 19-04-2016 IPR014043 Acyl transferase AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF53901 32 406 1.01E-100 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF55048 3971 4036 3.92E-13 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 4037 4131 1.41E-63 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 3845 3972 1.41E-63 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 1345 1551 1.2E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 558 680 3.2E-74 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.366.10 750 861 3.2E-74 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF47336 3228 3338 4.19E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF47336 4926 5009 3.4E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF51735 4488 4644 4.72E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1652 1667 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4960 4975 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3259 3274 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 751 854 2.88E-68 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF52151 559 686 2.88E-68 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00550 Phosphopantetheine attachment site 4935 5001 1.8E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00550 Phosphopantetheine attachment site 3234 3300 2.7E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Pfam PF00550 Phosphopantetheine attachment site 1628 1693 1.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 PANTHER PTHR11712:SF242 3761 5060 0.0 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 PANTHER PTHR11712:SF242 1318 2168 0.0 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 3587 3751 5.1E-67 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 298 465 2.3E-62 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.47.10 1980 2143 2.0E-65 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF53901 1714 2087 5.26E-102 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 Gene3D G3DSA:3.40.50.720 2954 3143 2.2E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF55048 2364 2421 1.96E-11 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF47336 1621 1732 2.36E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 3487 3503 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 1880 1896 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SUPERFAMILY SSF53901 3321 3694 3.3E-101 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 PANTHER PTHR11712 3761 5060 0.0 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 PANTHER PTHR11712 1318 2168 0.0 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1346 1519 5.5E-49 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4657 4833 1.1E-43 T 19-04-2016 AMED_0618 d1b504d437c67794176cf5c19df7e202 5060 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2954 3126 9.3E-41 T 19-04-2016 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 SMART SM00637 37 136 4.2E-43 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 Gene3D G3DSA:2.60.120.200 462 658 2.8E-32 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 Gene3D G3DSA:2.115.10.20 165 446 5.3E-49 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 Pfam PF04616 Glycosyl hydrolases family 43 166 431 2.2E-36 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 Gene3D G3DSA:2.60.40.290 35 138 8.4E-36 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 Pfam PF00553 Cellulose binding domain 37 136 6.1E-32 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 SUPERFAMILY SSF75005 166 451 3.45E-63 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 PANTHER PTHR22925 164 654 6.9E-145 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 SUPERFAMILY SSF49384 33 138 6.98E-31 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 PANTHER PTHR22925:SF34 164 654 6.9E-145 T 19-04-2016 AMED_3285 a1a161cbe17c0069474ff5f3ae1d4a37 661 SUPERFAMILY SSF49899 462 657 1.62E-27 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_6084 154916a51c7ef4688d4b7228f607312f 225 PANTHER PTHR11935 25 223 3.1E-90 T 19-04-2016 AMED_6084 154916a51c7ef4688d4b7228f607312f 225 SMART SM00849 36 204 2.4E-29 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6084 154916a51c7ef4688d4b7228f607312f 225 PANTHER PTHR11935:SF89 25 223 3.1E-90 T 19-04-2016 AMED_6084 154916a51c7ef4688d4b7228f607312f 225 Pfam PF00753 Metallo-beta-lactamase superfamily 34 185 4.9E-15 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6084 154916a51c7ef4688d4b7228f607312f 225 SUPERFAMILY SSF56281 25 220 1.23E-43 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6084 154916a51c7ef4688d4b7228f607312f 225 Gene3D G3DSA:3.60.15.10 20 223 2.1E-46 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PANTHER PTHR24322:SF428 12 141 3.6E-42 T 19-04-2016 AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 7.4E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 7.4E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.4E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 7.4E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.4E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PANTHER PTHR24322:SF428 162 193 3.6E-42 T 19-04-2016 AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 Pfam PF00106 short chain dehydrogenase 9 202 1.2E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 SUPERFAMILY SSF51735 6 251 3.71E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PANTHER PTHR24322 12 141 3.6E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PANTHER PTHR24322 162 193 3.6E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 193 5.5E-4 T 19-04-2016 AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 Gene3D G3DSA:3.40.50.720 5 253 3.0E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3376 42c9dacbf5d1222d2fd2c23d9f109e5d 292 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 SUPERFAMILY SSF46689 186 233 4.93E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 PANTHER PTHR11019 15 232 6.8E-61 T 19-04-2016 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 Gene3D G3DSA:1.10.10.60 188 234 9.9E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 PANTHER PTHR11019:SF53 15 232 6.8E-61 T 19-04-2016 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 Gene3D G3DSA:2.60.120.10 4 70 3.2E-8 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 SMART SM00342 150 232 1.1E-19 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 Pfam PF12833 Helix-turn-helix domain 158 233 9.3E-20 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 SUPERFAMILY SSF51182 4 154 7.65E-10 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_4650 ff4b8f58a9fc6df09815ab857cc56560 235 Gene3D G3DSA:1.10.10.60 128 187 9.8E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.1E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.1E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.1E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.6E-20 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 Pfam PF03466 LysR substrate binding domain 86 275 3.2E-39 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_8339 63094ab0b3536c30c050472f7c46c198 300 Gene3D G3DSA:1.10.10.10 1 80 5.6E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8339 63094ab0b3536c30c050472f7c46c198 300 PANTHER PTHR30126 1 292 9.2E-76 T 19-04-2016 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 SUPERFAMILY SSF53850 87 281 3.15E-36 T 19-04-2016 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 Gene3D G3DSA:3.40.190.10 176 252 1.2E-15 T 19-04-2016 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 Gene3D G3DSA:3.40.190.10 90 175 3.4E-21 T 19-04-2016 AMED_8339 63094ab0b3536c30c050472f7c46c198 300 SUPERFAMILY SSF46785 1 86 4.09E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8339 63094ab0b3536c30c050472f7c46c198 300 PANTHER PTHR30126:SF31 1 292 9.2E-76 T 19-04-2016 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 SUPERFAMILY SSF50022 50 143 3.01E-27 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 Gene3D G3DSA:2.102.10.10 7 143 1.5E-29 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 Pfam PF00355 Rieske [2Fe-2S] domain 56 134 2.9E-15 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 PANTHER PTHR10134 86 145 8.0E-16 T 19-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 PRINTS PR00162 Rieske 2Fe-2S subunit signature 86 97 1.2E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 PRINTS PR00162 Rieske 2Fe-2S subunit signature 105 117 1.2E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_2729 c9e50df06edf37ed4a1c38827c744428 145 PRINTS PR00162 Rieske 2Fe-2S subunit signature 118 130 1.2E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 Pfam PF02347 Glycine cleavage system P-protein 454 734 2.3E-8 T 19-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 Pfam PF02347 Glycine cleavage system P-protein 16 443 1.9E-170 T 19-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 PANTHER PTHR11773 14 958 0.0 T 19-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 SUPERFAMILY SSF53383 930 953 1.15E-90 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4983 5170055f150283e8e884bc5d45792d4d 961 SUPERFAMILY SSF53383 457 889 1.15E-90 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4983 5170055f150283e8e884bc5d45792d4d 961 PANTHER PTHR11773:SF1 14 958 0.0 T 19-04-2016 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 Gene3D G3DSA:3.40.640.10 504 740 2.5E-35 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 Gene3D G3DSA:3.40.640.10 90 307 3.5E-11 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 951 0.0 T 19-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 AMED_4983 5170055f150283e8e884bc5d45792d4d 961 SUPERFAMILY SSF53383 17 439 1.27E-94 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4983 5170055f150283e8e884bc5d45792d4d 961 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 957 24.882 T 19-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 67 109 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 Gene3D G3DSA:1.10.10.60 14 68 7.5E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 SUPERFAMILY SSF46689 15 64 3.94E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 SUPERFAMILY SSF46689 66 117 1.43E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 PANTHER PTHR11019 11 121 1.3E-32 T 19-04-2016 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 Pfam PF12833 Helix-turn-helix domain 36 114 1.8E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 Gene3D G3DSA:1.10.10.60 69 124 3.4E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2533 7d75969b3a7a7483cae44420545b9849 146 SMART SM00342 30 113 8.5E-32 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_2974 8da80777aeae6b588551aade095fd211 414 Pfam PF09298 Fumarylacetoacetase N-terminal 29 121 4.0E-18 T 19-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 AMED_2974 8da80777aeae6b588551aade095fd211 414 Gene3D G3DSA:2.30.30.230 15 124 1.4E-27 T 19-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 AMED_2974 8da80777aeae6b588551aade095fd211 414 SUPERFAMILY SSF63433 15 121 1.09E-25 T 19-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 AMED_2974 8da80777aeae6b588551aade095fd211 414 SUPERFAMILY SSF56529 124 413 3.4E-94 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_2974 8da80777aeae6b588551aade095fd211 414 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 128 412 3.1E-56 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_2974 8da80777aeae6b588551aade095fd211 414 PANTHER PTHR11820 10 96 1.0E-140 T 19-04-2016 AMED_2974 8da80777aeae6b588551aade095fd211 414 PANTHER PTHR11820 122 413 1.0E-140 T 19-04-2016 AMED_2974 8da80777aeae6b588551aade095fd211 414 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 16 413 2.0E-135 T 19-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 AMED_2974 8da80777aeae6b588551aade095fd211 414 PANTHER PTHR11820:SF1 10 96 1.0E-140 T 19-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 AMED_2974 8da80777aeae6b588551aade095fd211 414 PANTHER PTHR11820:SF1 122 413 1.0E-140 T 19-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 AMED_2974 8da80777aeae6b588551aade095fd211 414 Gene3D G3DSA:3.90.850.10 125 407 1.2E-106 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Pfam PF04675 DNA ligase N terminus 75 140 2.9E-8 T 19-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 SUPERFAMILY SSF117018 4 203 2.22E-22 T 19-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 SUPERFAMILY SSF50249 378 502 1.88E-30 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 210 218 - T 19-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Pfam PF04679 ATP dependent DNA ligase C terminal region 395 487 3.3E-11 T 19-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:3.30.1490.70 333 377 1.7E-18 T 19-04-2016 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:3.30.1490.70 185 214 1.7E-18 T 19-04-2016 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:2.40.50.140 379 502 5.3E-33 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 SUPERFAMILY SSF56091 182 376 5.76E-43 T 19-04-2016 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 TIGRFAM TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1) 90 500 1.9E-75 T 19-04-2016 IPR000977 DNA ligase, ATP-dependent GO:0003910|GO:0005524|GO:0006281|GO:0006310|GO:0071897 Reactome: REACT_216 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 PANTHER PTHR10459:SF47 23 501 1.7E-152 T 19-04-2016 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 PANTHER PTHR10459 23 501 1.7E-152 T 19-04-2016 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:1.10.3260.10 76 184 5.1E-16 T 19-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Gene3D G3DSA:3.30.470.30 215 325 1.8E-27 T 19-04-2016 AMED_8064 f6fdfac55f72bd5e14e78058cf70202d 510 Pfam PF01068 ATP dependent DNA ligase domain 188 376 2.9E-40 T 19-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 91 5.3E-6 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:1.25.40.10 105 217 1.0E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 SUPERFAMILY SSF46894 5 92 6.24E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 SUPERFAMILY SSF48452 96 258 3.08E-26 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 Pfam PF03704 Bacterial transcriptional activator domain 97 238 3.6E-33 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 SMART SM00862 18 92 9.5E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:1.10.10.10 13 93 1.0E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 SMART SM01043 97 238 4.9E-33 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 Gene3D G3DSA:3.40.50.300 259 397 1.9E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 PRINTS PR00364 Disease resistance protein signature 459 473 1.7E-5 T 19-04-2016 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 PRINTS PR00364 Disease resistance protein signature 355 369 1.7E-5 T 19-04-2016 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 PRINTS PR00364 Disease resistance protein signature 282 297 1.7E-5 T 19-04-2016 AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 SUPERFAMILY SSF52540 254 523 1.33E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8151 c5a96a97b591bf5877d197ec7fbee086 1056 PANTHER PTHR35807 1 328 1.5E-39 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 SMART SM00220 12 267 3.2E-57 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 PANTHER PTHR24362:SF160 1 310 1.2E-77 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 PANTHER PTHR24362:SF160 344 390 1.2E-77 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 PANTHER PTHR24362 1 310 1.2E-77 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 PANTHER PTHR24362 344 390 1.2E-77 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 Gene3D G3DSA:1.10.510.10 82 265 6.8E-45 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 Pfam PF00069 Protein kinase domain 12 264 6.7E-47 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 SUPERFAMILY SSF56112 5 267 8.77E-69 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 Gene3D G3DSA:3.30.200.20 5 81 5.4E-23 T 19-04-2016 AMED_8344 709d9612ce79fdbeb68cbe802fc5af49 494 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 134 146 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_2155 a28b7a531d190d6a8a19317a42dd04c2 394 PANTHER PTHR36840 1 387 6.7E-60 T 19-04-2016 AMED_2155 a28b7a531d190d6a8a19317a42dd04c2 394 PANTHER PTHR36840:SF1 1 387 6.7E-60 T 19-04-2016 AMED_2155 a28b7a531d190d6a8a19317a42dd04c2 394 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 27 382 8.4E-94 T 19-04-2016 IPR010640 Low temperature requirement A AMED_3444 7f17f83b70cfd7e206d609baba0bb502 247 PANTHER PTHR14194:SF69 1 244 7.3E-98 T 19-04-2016 AMED_3444 7f17f83b70cfd7e206d609baba0bb502 247 Pfam PF13460 NAD(P)H-binding 7 135 5.9E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3444 7f17f83b70cfd7e206d609baba0bb502 247 Gene3D G3DSA:3.40.50.720 1 199 8.3E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3444 7f17f83b70cfd7e206d609baba0bb502 247 PANTHER PTHR14194 1 244 7.3E-98 T 19-04-2016 AMED_3444 7f17f83b70cfd7e206d609baba0bb502 247 SUPERFAMILY SSF51735 1 215 2.57E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Pfam PF07498 Rho termination factor, N-terminal domain 31 69 5.4E-10 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 SMART SM00382 410 595 8.2E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 SUPERFAMILY SSF50249 293 368 2.4E-16 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 SMART SM00357 294 361 2.9E-7 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 PANTHER PTHR15184:SF34 215 656 2.1E-162 T 19-04-2016 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Pfam PF07497 Rho termination factor, RNA-binding domain 293 368 3.9E-29 T 19-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 SMART SM00959 30 72 1.6E-9 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 SUPERFAMILY SSF68912 31 70 4.32E-5 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Gene3D G3DSA:2.40.50.140 31 70 3.0E-40 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Gene3D G3DSA:2.40.50.140 288 369 3.0E-40 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 399 603 8.7E-23 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 TIGRFAM TIGR00767 rho: transcription termination factor Rho 30 657 5.8E-200 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 SUPERFAMILY SSF52540 332 610 3.72E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Gene3D G3DSA:3.40.50.300 374 657 7.9E-95 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 Hamap MF_01884 Transcription termination factor Rho [rho]. 286 659 198.434 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMED_7792 ffbb964d34e40524990e17d13fbce8ca 667 PANTHER PTHR15184 215 656 2.1E-162 T 19-04-2016 AMED_4035 02bff062fc09ef7237f4adc1b86de614 268 PIRSF PIRSF006648 2 266 1.4E-57 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_4035 02bff062fc09ef7237f4adc1b86de614 268 PANTHER PTHR30294:SF24 3 231 1.8E-56 T 19-04-2016 AMED_4035 02bff062fc09ef7237f4adc1b86de614 268 Pfam PF01061 ABC-2 type transporter 19 224 2.0E-20 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_4035 02bff062fc09ef7237f4adc1b86de614 268 PANTHER PTHR30294 3 231 1.8E-56 T 19-04-2016 AMED_1577 cf1381138a822f001a8fcf2203af1ec0 151 PANTHER PTHR21366:SF0 9 143 1.2E-31 T 19-04-2016 AMED_1577 cf1381138a822f001a8fcf2203af1ec0 151 Gene3D G3DSA:3.10.180.10 9 143 3.4E-39 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1577 cf1381138a822f001a8fcf2203af1ec0 151 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 128 1.6E-22 T 19-04-2016 AMED_1577 cf1381138a822f001a8fcf2203af1ec0 151 PANTHER PTHR21366 9 143 1.2E-31 T 19-04-2016 AMED_1577 cf1381138a822f001a8fcf2203af1ec0 151 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 12 143 3.8E-40 T 19-04-2016 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384 AMED_1577 cf1381138a822f001a8fcf2203af1ec0 151 SUPERFAMILY SSF54593 9 144 6.44E-32 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8595 363defd170786156cfb67c9cb15e4df2 130 Hamap MF_01255 L-ectoine synthase [ectC]. 1 127 37.549 T 19-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 AMED_8595 363defd170786156cfb67c9cb15e4df2 130 Gene3D G3DSA:2.60.120.10 13 110 1.8E-11 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8595 363defd170786156cfb67c9cb15e4df2 130 Pfam PF06339 Ectoine synthase 2 125 2.7E-58 T 19-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 AMED_8595 363defd170786156cfb67c9cb15e4df2 130 PANTHER PTHR39289 1 129 2.1E-43 T 19-04-2016 AMED_8595 363defd170786156cfb67c9cb15e4df2 130 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 117 5.0E-40 T 19-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 AMED_8595 363defd170786156cfb67c9cb15e4df2 130 PANTHER PTHR39289:SF1 1 129 2.1E-43 T 19-04-2016 AMED_8595 363defd170786156cfb67c9cb15e4df2 130 SUPERFAMILY SSF51182 18 125 2.08E-19 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 92 327 1.6E-83 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.40.47.10 341 502 3.5E-60 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 PANTHER PTHR11712:SF285 1 1028 0.0 T 19-04-2016 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF00550 Phosphopantetheine attachment site 11 72 8.0E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF00550 Phosphopantetheine attachment site 996 1058 1.5E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:1.10.1200.10 996 1058 2.8E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF47336 4 106 7.72E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 PANTHER PTHR11712 1 1028 0.0 T 19-04-2016 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SMART SM00823 Phosphopantetheine attachment site 995 1066 1.9E-8 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SMART SM00823 Phosphopantetheine attachment site 10 78 3.4E-9 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF52151 806 902 3.4E-58 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF52151 624 747 3.4E-58 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 453 574 1.2E-16 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.40.47.10 101 339 3.2E-94 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SMART SM00825 Beta-ketoacyl synthase 94 503 5.1E-198 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1021 1036 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.40.366.10 805 919 1.0E-60 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.40.366.10 620 741 1.0E-60 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF55048 746 804 3.4E-8 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF53474 1152 1419 5.83E-46 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.40.50.1820 1345 1419 1.7E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.40.50.1820 1153 1266 1.7E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF53901 478 499 6.86E-91 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF53901 88 446 6.86E-91 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 240 256 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SUPERFAMILY SSF47336 996 1067 8.38E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF00975 Thioesterase domain 1170 1265 5.4E-17 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:1.10.1200.10 6 100 3.1E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 626 915 2.1E-77 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Gene3D G3DSA:3.30.70.250 743 804 1.1E-4 T 19-04-2016 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 335 450 1.1E-40 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 SMART SM00824 Thioesterase 1137 1419 0.0024 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_4482 7fd2c226672ee54750d349e9b558f583 1421 Pfam PF00698 Acyl transferase domain 624 932 2.4E-75 T 19-04-2016 IPR014043 Acyl transferase AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 Pfam PF02142 MGS-like domain 22 135 7.8E-25 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 PANTHER PTHR11692:SF2 8 522 4.4E-274 T 19-04-2016 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 Gene3D G3DSA:3.40.140.20 249 366 1.3E-45 T 19-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 SUPERFAMILY SSF53927 221 522 1.7E-118 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 SMART SM00851 22 136 2.8E-48 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 PANTHER PTHR11692 8 522 4.4E-274 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 10 522 42.585 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 Gene3D G3DSA:3.40.50.1380 9 191 2.2E-76 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 Pfam PF01808 AICARFT/IMPCHase bienzyme 141 456 2.5E-114 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 Gene3D G3DSA:3.40.140.20 370 512 7.1E-52 T 19-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 SMART SM00798 141 457 2.0E-185 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 11 522 2.3E-174 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 SUPERFAMILY SSF52335 10 199 8.37E-64 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_0807 99364f69aeb51d9cd468361b6d66d6c1 522 PIRSF PIRSF000414 6 522 5.3E-197 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMED_5101 8288a0c1496347e0d25b49a3ef410937 115 Pfam PF06689 ClpX C4-type zinc finger 8 43 1.2E-15 T 19-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMED_5101 8288a0c1496347e0d25b49a3ef410937 115 SUPERFAMILY SSF57716 8 42 1.4E-9 T 19-04-2016 AMED_5101 8288a0c1496347e0d25b49a3ef410937 115 SMART SM00994 6 45 1.0E-13 T 19-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 Pfam PF01593 Flavin containing amine oxidoreductase 16 404 1.3E-34 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 PANTHER PTHR10742:SF287 10 408 6.4E-44 T 19-04-2016 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 SUPERFAMILY SSF51905 367 407 2.3E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 SUPERFAMILY SSF51905 4 286 2.3E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 PANTHER PTHR10742 10 408 6.4E-44 T 19-04-2016 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 Gene3D G3DSA:3.50.50.60 367 409 7.9E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 Gene3D G3DSA:3.50.50.60 8 45 7.9E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4069 7d3886f737a1e6ea1ab4264b758040e1 415 Gene3D G3DSA:3.50.50.60 206 274 7.9E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 PANTHER PTHR33303:SF3 8 680 2.1E-122 T 19-04-2016 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 159 292 1.7E-31 T 19-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMED_3841 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.40.50.261 135 292 1.7E-15 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 SMART SM00881 9 104 3.6E-28 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF51735 4 143 5.76E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3841 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF56059 473 681 9.71E-25 T 19-04-2016 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 Pfam PF13380 CoA binding domain 13 138 1.4E-22 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF52210 308 456 2.75E-17 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 PANTHER PTHR33303 8 680 2.1E-122 T 19-04-2016 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 SUPERFAMILY SSF52210 136 299 1.44E-28 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_3841 60dc2630d32567221931ff585e81ebf0 689 Gene3D G3DSA:3.40.50.720 6 134 5.8E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3841 60dc2630d32567221931ff585e81ebf0 689 Pfam PF13549 ATP-grasp domain 471 681 3.8E-45 T 19-04-2016 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Gene3D G3DSA:1.20.1610.10 828 1000 1.2E-50 T 19-04-2016 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 PANTHER PTHR12143 377 1144 2.3E-199 T 19-04-2016 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Gene3D G3DSA:3.30.2080.10 1001 1150 5.8E-60 T 19-04-2016 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 SUPERFAMILY SSF49785 1178 1295 2.08E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Gene3D G3DSA:2.70.98.10 399 691 4.1E-74 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 SUPERFAMILY SSF48208 713 1120 8.5E-21 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 SUPERFAMILY SSF48208 635 685 8.5E-21 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Pfam PF07971 Glycosyl hydrolase family 92 609 1139 1.5E-149 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Gene3D G3DSA:2.60.120.260 89 213 3.1E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Gene3D G3DSA:2.60.120.260 1183 1295 1.2E-7 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Gene3D G3DSA:1.20.1050.60 735 825 1.2E-31 T 19-04-2016 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 414 1141 9.5E-138 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 Pfam PF00754 F5/8 type C domain 90 212 1.5E-14 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 PANTHER PTHR12143:SF19 377 1144 2.3E-199 T 19-04-2016 AMED_4647 fdea5885830730d794fbeb9b68dfd45e 1436 SUPERFAMILY SSF49785 90 207 7.8E-15 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4132 6cca08d1666af8d264bd4cbe8f08b465 254 SUPERFAMILY SSF52091 10 117 4.51E-7 T 19-04-2016 IPR002645 STAS domain AMED_4132 6cca08d1666af8d264bd4cbe8f08b465 254 Gene3D G3DSA:3.30.750.24 9 117 5.3E-8 T 19-04-2016 IPR002645 STAS domain AMED_4132 6cca08d1666af8d264bd4cbe8f08b465 254 SUPERFAMILY SSF55874 150 241 5.42E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5881 854637162e8be36004cd08a9c1496b33 273 PANTHER PTHR35010 4 272 3.7E-96 T 19-04-2016 AMED_5881 854637162e8be36004cd08a9c1496b33 273 SMART SM00530 10 82 2.0E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5881 854637162e8be36004cd08a9c1496b33 273 Pfam PF13560 Helix-turn-helix domain 7 85 1.1E-16 T 19-04-2016 AMED_5881 854637162e8be36004cd08a9c1496b33 273 SUPERFAMILY SSF47413 31 80 5.91E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5881 854637162e8be36004cd08a9c1496b33 273 PANTHER PTHR35010:SF2 4 272 3.7E-96 T 19-04-2016 AMED_5881 854637162e8be36004cd08a9c1496b33 273 Gene3D G3DSA:1.10.260.40 5 80 5.8E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 PANTHER PTHR11014 2 355 4.8E-46 T 19-04-2016 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 Gene3D G3DSA:3.30.70.360 180 271 6.4E-22 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 Pfam PF01546 Peptidase family M20/M25/M40 67 355 6.5E-19 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 SUPERFAMILY SSF55031 171 272 4.78E-19 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 SUPERFAMILY SSF53187 8 183 1.56E-39 T 19-04-2016 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 SUPERFAMILY SSF53187 277 355 1.56E-39 T 19-04-2016 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 TIGRFAM TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase 6 356 5.6E-151 T 19-04-2016 IPR010174 Succinyl-diaminopimelate desuccinylase, DapE GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 Pfam PF07687 Peptidase dimerisation domain 171 268 1.7E-12 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 Gene3D G3DSA:3.40.630.10 8 179 1.0E-40 T 19-04-2016 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 Gene3D G3DSA:3.40.630.10 300 355 1.0E-40 T 19-04-2016 AMED_1033 56f5f74f99aa999ddd85996d24d71f8a 356 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 98 133 - T 19-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMED_2229 0a1bdf020f71023abf7dfd83f6e37482 437 Gene3D G3DSA:1.10.287.1060 25 105 5.1E-7 T 19-04-2016 AMED_2229 0a1bdf020f71023abf7dfd83f6e37482 437 SUPERFAMILY SSF140459 9 114 2.33E-9 T 19-04-2016 AMED_2229 0a1bdf020f71023abf7dfd83f6e37482 437 Pfam PF06013 Proteins of 100 residues with WXG 25 103 2.2E-6 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:3.40.50.2000 965 1100 3.9E-17 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:1.25.40.10 501 736 1.1E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 PANTHER PTHR22845:SF4 87 438 5.2E-38 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 PRINTS PR00364 Disease resistance protein signature 198 212 5.1E-7 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 PRINTS PR00364 Disease resistance protein signature 286 300 5.1E-7 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 PRINTS PR00364 Disease resistance protein signature 119 134 5.1E-7 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Pfam PF00534 Glycosyl transferases group 1 969 1098 2.5E-13 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF48452 507 698 4.74E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 PANTHER PTHR22845 87 438 5.2E-38 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 SMART SM00530 11 66 4.3E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:3.40.50.300 134 173 2.5E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF52540 79 349 3.0E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 SMART SM00382 116 270 7.3E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:1.10.260.40 5 60 1.5E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Pfam PF13560 Helix-turn-helix domain 8 65 6.2E-11 T 19-04-2016 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Pfam PF00931 NB-ARC domain 98 327 4.4E-15 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 Gene3D G3DSA:3.40.50.300 93 133 2.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF47413 6 61 1.41E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4333 e04d847330300a0d3ac7f0612ab94717 1178 SUPERFAMILY SSF53756 783 1173 7.33E-35 T 19-04-2016 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 PANTHER PTHR10772 11 97 7.0E-18 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 85 98 4.0E-9 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 64 76 4.0E-9 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 12 27 4.0E-9 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 PRINTS PR00297 10kDa chaperonin signature 38 59 4.0E-9 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 PANTHER PTHR10772:SF0 11 97 7.0E-18 T 19-04-2016 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 Gene3D G3DSA:2.30.33.40 12 97 1.6E-19 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 SUPERFAMILY SSF50129 11 98 3.46E-19 T 19-04-2016 IPR011032 GroES-like AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 Pfam PF00166 Chaperonin 10 Kd subunit 12 97 8.4E-19 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_9202 a6dd8662fe2534ff1513cb3f9b0eade2 110 SMART SM00883 11 98 6.5E-27 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 Pfam PF02682 Allophanate hydrolase subunit 1 3 190 1.4E-67 T 19-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 PANTHER PTHR34698:SF2 1 200 8.2E-75 T 19-04-2016 AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 Gene3D G3DSA:3.30.1360.40 3 66 1.4E-12 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 PANTHER PTHR34698 1 200 8.2E-75 T 19-04-2016 AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 Gene3D G3DSA:2.40.100.10 79 201 1.6E-49 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 SMART SM00796 3 190 4.0E-87 T 19-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 SUPERFAMILY SSF160467 4 83 4.84E-14 T 19-04-2016 AMED_8385 d1c0d6e89d7de94cb38cab5bb8597093 203 SUPERFAMILY SSF50891 79 201 2.28E-41 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_8313 269d91fdd2b521050172c47341b23fc6 99 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 2 51 2.9E-20 T 19-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMED_8313 269d91fdd2b521050172c47341b23fc6 99 PANTHER PTHR34404 2 93 3.1E-25 T 19-04-2016 AMED_8313 269d91fdd2b521050172c47341b23fc6 99 PANTHER PTHR34404:SF2 2 93 3.1E-25 T 19-04-2016 AMED_8313 269d91fdd2b521050172c47341b23fc6 99 SMART SM00834 2 41 1.5E-14 T 19-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMED_8313 269d91fdd2b521050172c47341b23fc6 99 Pfam PF09723 Zinc ribbon domain 2 40 4.2E-15 T 19-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 PANTHER PTHR11751:SF394 80 397 9.7E-90 T 19-04-2016 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 SUPERFAMILY SSF46785 25 94 2.24E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 Gene3D G3DSA:3.40.640.10 140 351 6.0E-44 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 PANTHER PTHR11751 80 397 9.7E-90 T 19-04-2016 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 Gene3D G3DSA:1.10.10.10 25 86 5.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 Pfam PF00155 Aminotransferase class I and II 121 378 2.9E-13 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 SMART SM00345 25 84 5.9E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 84 1.2E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 5.3E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 5.3E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1581 1b1a2fefd2aace5d15bc99ba6380e847 460 SUPERFAMILY SSF53383 101 457 2.09E-70 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 Pfam PF00072 Response regulator receiver domain 9 119 1.5E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 214 2.1E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 SUPERFAMILY SSF52172 6 185 2.87E-31 T 19-04-2016 IPR011006 CheY-like superfamily AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 8.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 8.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 8.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 Gene3D G3DSA:3.40.50.2300 3 120 3.9E-32 T 19-04-2016 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 SMART SM00421 157 214 3.2E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 PANTHER PTHR26402 7 219 9.2E-66 T 19-04-2016 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 Gene3D G3DSA:1.10.10.10 121 219 1.3E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 SMART SM00448 7 119 8.5E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9312 ca3c9678f14838a943f13c945e64cb6c 222 PANTHER PTHR26402:SF151 7 219 9.2E-66 T 19-04-2016 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 477 552 1.3E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 Gene3D G3DSA:3.40.50.980 208 354 3.8E-27 T 19-04-2016 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 PANTHER PTHR24096 10 560 4.0E-105 T 19-04-2016 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 Pfam PF00501 AMP-binding enzyme 43 468 1.9E-66 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 Gene3D G3DSA:3.40.50.980 21 207 4.1E-26 T 19-04-2016 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 Gene3D G3DSA:2.30.38.10 388 461 2.1E-12 T 19-04-2016 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 SUPERFAMILY SSF56801 20 560 4.06E-110 T 19-04-2016 AMED_6956 318765484c4d01adb1a15ea22d84d4c4 563 Gene3D G3DSA:3.30.300.30 463 560 9.4E-28 T 19-04-2016 AMED_4657 65d46ae585b8c6459f63aa879b0513ef 298 PANTHER PTHR30465 11 298 1.3E-86 T 19-04-2016 AMED_4657 65d46ae585b8c6459f63aa879b0513ef 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 298 2.3E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4657 65d46ae585b8c6459f63aa879b0513ef 298 Gene3D G3DSA:1.10.3720.10 93 294 7.5E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4657 65d46ae585b8c6459f63aa879b0513ef 298 PANTHER PTHR30465:SF2 11 298 1.3E-86 T 19-04-2016 AMED_4657 65d46ae585b8c6459f63aa879b0513ef 298 SUPERFAMILY SSF161098 92 280 1.13E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:2.30.38.10 1330 1406 3.4E-27 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF13745 HxxPF-repeated domain 324 412 1.6E-19 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF13745 HxxPF-repeated domain 873 964 1.3E-26 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF47336 463 573 1.7E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1546 1561 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 ProSitePatterns PS00012 Phosphopantetheine attachment site. 493 508 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF47336 1515 1588 4.84E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 191 430 4.11E-49 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00501 AMP-binding enzyme 1022 1417 2.3E-86 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 12 183 6.23E-39 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF13193 AMP-binding enzyme C-terminal domain 1425 1496 1.2E-11 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 558 753 4.67E-43 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.40.50.980 1011 1164 1.5E-41 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00550 Phosphopantetheine attachment site 1524 1587 1.4E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00550 Phosphopantetheine attachment site 471 536 5.7E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF52777 739 985 2.45E-58 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.40.50.980 1165 1329 5.0E-35 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:1.10.1200.10 1527 1589 1.2E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:1.10.1200.10 459 541 8.2E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 PANTHER PTHR24095:SF137 454 1605 2.2E-298 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1156 1167 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1039 1441 3.8E-119 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00668 Condensation domain 12 300 7.5E-43 T 19-04-2016 IPR001242 Condensation domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Pfam PF00668 Condensation domain 561 850 8.5E-55 T 19-04-2016 IPR001242 Condensation domain AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 Gene3D G3DSA:3.30.300.30 1412 1526 7.4E-35 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 PANTHER PTHR24095 454 1605 2.2E-298 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SUPERFAMILY SSF56801 976 1534 3.92E-148 T 19-04-2016 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SMART SM00823 Phosphopantetheine attachment site 1522 1591 5.2E-6 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4769 c25caa2d60197dd0a101396a5e4debca 1608 SMART SM00823 Phosphopantetheine attachment site 469 541 5.7E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 SMART SM00382 30 217 1.8E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 PANTHER PTHR24220:SF578 6 224 4.8E-96 T 19-04-2016 AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 Pfam PF00005 ABC transporter 21 169 3.7E-35 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 PANTHER PTHR24220 6 224 4.8E-96 T 19-04-2016 AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 Gene3D G3DSA:3.40.50.300 3 221 2.8E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3544 30d7cb27f9cda28ec273327da43d279b 231 SUPERFAMILY SSF52540 5 221 9.96E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 Pfam PF00072 Response regulator receiver domain 4 117 1.0E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 SMART SM00421 151 208 1.7E-26 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.1E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.1E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.1E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 Gene3D G3DSA:1.10.10.10 125 215 1.5E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 4.1E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 PANTHER PTHR26402 2 214 2.3E-95 T 19-04-2016 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 SUPERFAMILY SSF52172 1 134 2.85E-36 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 Gene3D G3DSA:3.40.50.2300 1 124 1.2E-39 T 19-04-2016 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 SUPERFAMILY SSF46894 144 214 7.48E-23 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 PANTHER PTHR26402:SF564 2 214 2.3E-95 T 19-04-2016 AMED_7890 d7193d28aa9e430f8b2984876de88f6b 221 SMART SM00448 2 116 3.7E-33 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 Gene3D G3DSA:2.40.10.10 33 68 2.5E-10 T 19-04-2016 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 Gene3D G3DSA:2.40.10.10 117 237 7.3E-16 T 19-04-2016 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 SMART SM00020 32 234 2.0E-10 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 PANTHER PTHR24276 4 208 1.1E-20 T 19-04-2016 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 186 198 3.4E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 109 123 3.4E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 63 78 3.4E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 SUPERFAMILY SSF50494 19 238 1.34E-35 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_2777 40718075bc0af19db8e1ef8024892aed 240 Pfam PF00089 Trypsin 33 234 7.4E-24 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2777 40718075bc0af19db8e1ef8024892aed 240 Gene3D G3DSA:2.40.10.10 69 116 7.9E-12 T 19-04-2016 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 Pfam PF08031 Berberine and berberine like 457 499 4.4E-15 T 19-04-2016 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 Gene3D G3DSA:3.30.43.10 96 154 3.7E-5 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 PANTHER PTHR11748 66 497 8.2E-101 T 19-04-2016 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 PANTHER PTHR11748:SF86 66 497 8.2E-101 T 19-04-2016 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 Gene3D G3DSA:3.30.465.10 155 266 4.3E-16 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 Pfam PF01565 FAD binding domain 102 232 1.0E-27 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_0777 4bf7466c950620e534930cb4dffd6d86 501 SUPERFAMILY SSF56176 73 264 1.64E-50 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:1.25.40.10 687 917 8.9E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:3.40.50.300 267 383 5.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF00931 NB-ARC domain 287 474 2.0E-8 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF46894 12 70 6.52E-9 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00862 7 86 1.3E-5 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 PANTHER PTHR22845 133 620 3.4E-69 T 19-04-2016 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Gene3D G3DSA:1.10.10.10 3 70 1.9E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 PANTHER PTHR22845:SF4 133 620 3.4E-69 T 19-04-2016 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF48452 685 895 3.41E-21 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF48452 89 255 2.69E-31 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF00486 Transcriptional regulatory protein, C terminal 16 70 3.3E-5 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 PRINTS PR00364 Disease resistance protein signature 455 469 2.6E-9 T 19-04-2016 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 PRINTS PR00364 Disease resistance protein signature 289 304 2.6E-9 T 19-04-2016 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 PRINTS PR00364 Disease resistance protein signature 367 381 2.6E-9 T 19-04-2016 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF13424 Tetratricopeptide repeat 744 816 1.0E-12 T 19-04-2016 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 705 738 6.6 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 786 819 0.0015 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 745 778 5.5 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SMART SM00028 866 899 190.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SMART SM01043 93 235 1.6E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 Pfam PF03704 Bacterial transcriptional activator domain 93 235 2.2E-38 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6457 5e63eea263a58476a5482f8afd1b597c 928 SUPERFAMILY SSF52540 258 521 2.72E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 PANTHER PTHR24220:SF502 5 380 2.6E-179 T 19-04-2016 AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 SUPERFAMILY SSF52540 3 222 5.13E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 PANTHER PTHR24220 5 380 2.6E-179 T 19-04-2016 AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 Gene3D G3DSA:3.40.50.300 3 222 5.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 Pfam PF00005 ABC transporter 19 169 3.5E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 Pfam PF00005 ABC transporter 272 425 7.3E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 SMART SM00382 28 217 1.4E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 SMART SM00382 280 474 1.5E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 SUPERFAMILY SSF52540 271 480 2.46E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3975 7fd236572326b1dfec87887bf4c4c1eb 499 Gene3D G3DSA:3.40.50.300 271 487 1.7E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 352 363 2.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 343 352 2.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 240 257 2.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00385 P450 superfamily signature 275 286 2.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PANTHER PTHR24286:SF42 34 403 2.4E-86 T 19-04-2016 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 Pfam PF00067 Cytochrome P450 276 370 1.7E-15 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 Pfam PF00067 Cytochrome P450 207 261 2.3E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PANTHER PTHR24286 34 403 2.4E-86 T 19-04-2016 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 322 337 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 154 169 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 343 352 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 89 100 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 275 286 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 294 321 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 194 216 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 137 153 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 PRINTS PR00359 B-class P450 signature 352 363 4.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 Gene3D G3DSA:1.10.630.10 15 403 3.7E-113 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5446 44e4091bbfaaf3e85759812deb891863 403 SUPERFAMILY SSF48264 14 403 2.62E-88 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1879 833d4ef56d48a80d7530d50716694379 410 Gene3D G3DSA:1.20.1250.20 247 407 7.6E-16 T 19-04-2016 AMED_1879 833d4ef56d48a80d7530d50716694379 410 PANTHER PTHR23518 4 401 2.5E-58 T 19-04-2016 AMED_1879 833d4ef56d48a80d7530d50716694379 410 Gene3D G3DSA:1.20.1250.20 25 216 3.3E-18 T 19-04-2016 AMED_1879 833d4ef56d48a80d7530d50716694379 410 SUPERFAMILY SSF103473 26 407 1.57E-41 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1879 833d4ef56d48a80d7530d50716694379 410 PANTHER PTHR23518:SF2 4 401 2.5E-58 T 19-04-2016 AMED_1879 833d4ef56d48a80d7530d50716694379 410 Pfam PF07690 Major Facilitator Superfamily 33 250 1.2E-15 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1375 1e0febb443eb52954d87826fb5478790 414 PANTHER PTHR23513:SF9 1 404 5.0E-87 T 19-04-2016 AMED_1375 1e0febb443eb52954d87826fb5478790 414 Pfam PF05977 Transmembrane secretion effector 10 395 2.1E-39 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_1375 1e0febb443eb52954d87826fb5478790 414 Gene3D G3DSA:1.20.1250.20 243 395 1.5E-12 T 19-04-2016 AMED_1375 1e0febb443eb52954d87826fb5478790 414 Gene3D G3DSA:1.20.1250.20 27 197 1.0E-15 T 19-04-2016 AMED_1375 1e0febb443eb52954d87826fb5478790 414 PANTHER PTHR23513 1 404 5.0E-87 T 19-04-2016 AMED_1375 1e0febb443eb52954d87826fb5478790 414 SUPERFAMILY SSF103473 19 401 4.58E-37 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7448 bed948c5b8522bde344acaa1263df4d4 120 PANTHER PTHR35174 2 118 3.1E-29 T 19-04-2016 AMED_7448 bed948c5b8522bde344acaa1263df4d4 120 PANTHER PTHR35174:SF3 2 118 3.1E-29 T 19-04-2016 AMED_7448 bed948c5b8522bde344acaa1263df4d4 120 SUPERFAMILY SSF54909 1 114 2.32E-29 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7448 bed948c5b8522bde344acaa1263df4d4 120 Gene3D G3DSA:3.30.70.1060 1 114 4.3E-39 T 19-04-2016 AMED_7448 bed948c5b8522bde344acaa1263df4d4 120 Pfam PF03795 YCII-related domain 1 113 1.5E-18 T 19-04-2016 IPR005545 YCII-related AMED_4284 ce9726a365cf7a259381fa51ec469841 674 PANTHER PTHR11731 1 171 3.4E-97 T 19-04-2016 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 PANTHER PTHR11731:SF130 213 310 3.4E-97 T 19-04-2016 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 SUPERFAMILY SSF53474 5 338 4.65E-71 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4284 ce9726a365cf7a259381fa51ec469841 674 Gene3D G3DSA:3.40.50.1820 218 333 2.2E-74 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4284 ce9726a365cf7a259381fa51ec469841 674 Gene3D G3DSA:3.40.50.1820 8 159 2.2E-74 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4284 ce9726a365cf7a259381fa51ec469841 674 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 20 505 3.1E-70 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 Gene3D G3DSA:2.60.120.260 335 536 5.4E-60 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4284 ce9726a365cf7a259381fa51ec469841 674 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 303 523 1.0E-57 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 PANTHER PTHR11731 213 310 3.4E-97 T 19-04-2016 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 23 274 2.1E-58 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 SMART SM00939 291 549 1.8E-89 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 PANTHER PTHR11731:SF130 1 171 3.4E-97 T 19-04-2016 AMED_4284 ce9726a365cf7a259381fa51ec469841 674 SUPERFAMILY SSF49785 329 531 3.4E-58 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8259 4eaf4da086523f56472da0daaae31093 278 PIRSF PIRSF005917 1 278 3.7E-90 T 19-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_8259 4eaf4da086523f56472da0daaae31093 278 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 5 225 32.726 T 19-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_8259 4eaf4da086523f56472da0daaae31093 278 Gene3D G3DSA:3.30.950.10 115 227 2.3E-43 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_8259 4eaf4da086523f56472da0daaae31093 278 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 208 1.2E-30 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_8259 4eaf4da086523f56472da0daaae31093 278 PANTHER PTHR21091 4 224 6.6E-67 T 19-04-2016 AMED_8259 4eaf4da086523f56472da0daaae31093 278 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 6 273 2.6E-62 T 19-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_8259 4eaf4da086523f56472da0daaae31093 278 PANTHER PTHR21091:SF18 4 224 6.6E-67 T 19-04-2016 AMED_8259 4eaf4da086523f56472da0daaae31093 278 Gene3D G3DSA:3.40.1010.10 5 114 8.0E-8 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_8259 4eaf4da086523f56472da0daaae31093 278 SUPERFAMILY SSF53790 4 223 1.96E-72 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_8296 726192835ebe6eeb818b4e46dda45645 253 Pfam PF00975 Thioesterase domain 21 236 2.0E-44 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_8296 726192835ebe6eeb818b4e46dda45645 253 SMART SM00824 Thioesterase 23 243 5.8E-5 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_8296 726192835ebe6eeb818b4e46dda45645 253 PANTHER PTHR11487 21 253 1.2E-75 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_8296 726192835ebe6eeb818b4e46dda45645 253 SUPERFAMILY SSF53474 7 241 4.38E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8296 726192835ebe6eeb818b4e46dda45645 253 Gene3D G3DSA:3.40.50.1820 179 241 1.1E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8296 726192835ebe6eeb818b4e46dda45645 253 Gene3D G3DSA:3.40.50.1820 8 123 1.1E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6546 534bf73843ba410125d3f937a160dd9a 234 Gene3D G3DSA:1.10.10.10 174 228 3.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6546 534bf73843ba410125d3f937a160dd9a 234 Pfam PF13185 GAF domain 21 157 8.9E-8 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6546 534bf73843ba410125d3f937a160dd9a 234 SMART SM01012 170 225 4.1E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6546 534bf73843ba410125d3f937a160dd9a 234 Gene3D G3DSA:3.30.450.40 7 173 6.6E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_6546 534bf73843ba410125d3f937a160dd9a 234 SUPERFAMILY SSF55781 24 169 1.18E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_6546 534bf73843ba410125d3f937a160dd9a 234 SMART SM00065 25 168 6.5E-4 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6546 534bf73843ba410125d3f937a160dd9a 234 Pfam PF03861 ANTAR domain 172 225 4.0E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6546 534bf73843ba410125d3f937a160dd9a 234 SUPERFAMILY SSF52172 156 224 2.78E-10 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6546 534bf73843ba410125d3f937a160dd9a 234 PIRSF PIRSF036625 2 234 2.4E-50 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_7824 582f3a623d79882425eab00a38d91f62 483 SMART SM00458 34 161 2.7E-34 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7824 582f3a623d79882425eab00a38d91f62 483 PANTHER PTHR40631 170 481 1.3E-95 T 19-04-2016 AMED_7824 582f3a623d79882425eab00a38d91f62 483 Pfam PF03664 Glycosyl hydrolase family 62 170 449 4.6E-68 T 19-04-2016 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 AMED_7824 582f3a623d79882425eab00a38d91f62 483 SUPERFAMILY SSF75005 197 465 2.49E-21 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_7824 582f3a623d79882425eab00a38d91f62 483 Gene3D G3DSA:2.80.10.50 31 159 2.9E-42 T 19-04-2016 AMED_7824 582f3a623d79882425eab00a38d91f62 483 Pfam PF00652 Ricin-type beta-trefoil lectin domain 34 158 3.9E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7824 582f3a623d79882425eab00a38d91f62 483 SUPERFAMILY SSF50370 33 159 1.13E-40 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7824 582f3a623d79882425eab00a38d91f62 483 Gene3D G3DSA:2.115.10.20 187 437 1.4E-14 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3572 9381aeb877263dd466e67a58594b2eb5 454 Gene3D G3DSA:3.40.50.300 16 160 1.7E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3572 9381aeb877263dd466e67a58594b2eb5 454 SUPERFAMILY SSF52540 16 254 3.78E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4800 4423d24235ed1db1785263104e0f4281 2390 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 516 907 1.6E-131 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1552 1959 1.2E-118 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF56801 1511 2056 9.68E-136 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00975 Thioesterase domain 2130 2374 6.1E-32 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 1076 1275 2.89E-47 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF47336 983 1056 9.42E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SMART SM00824 Thioesterase 2141 2378 7.6E-5 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 39 213 8.89E-45 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF13193 AMP-binding enzyme C-terminal domain 892 964 2.2E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF13193 AMP-binding enzyme C-terminal domain 1943 2016 4.2E-9 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:2.30.38.10 1848 1924 1.6E-23 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:2.30.38.10 797 874 4.3E-26 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:1.10.1200.10 2049 2112 7.3E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:1.10.1200.10 994 1061 9.3E-27 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF56801 455 1003 2.22E-152 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.980 1684 1847 6.5E-36 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.980 642 796 1.4E-40 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF53474 2116 2378 7.6E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4800 4423d24235ed1db1785263104e0f4281 2390 PRINTS PR00154 AMP-binding signature 640 648 6.1E-5 T 19-04-2016 IPR020459 AMP-binding AMED_4800 4423d24235ed1db1785263104e0f4281 2390 PRINTS PR00154 AMP-binding signature 628 639 6.1E-5 T 19-04-2016 IPR020459 AMP-binding AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF13745 HxxPF-repeated domain 1395 1485 1.1E-25 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF13745 HxxPF-repeated domain 353 442 1.4E-25 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 PANTHER PTHR24095 39 2016 0.0 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00668 Condensation domain 36 328 2.6E-67 T 19-04-2016 IPR001242 Condensation domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00668 Condensation domain 1076 1373 1.0E-58 T 19-04-2016 IPR001242 Condensation domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 1263 1506 1.45E-59 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00501 AMP-binding enzyme 1532 1935 1.5E-82 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00501 AMP-binding enzyme 496 884 1.2E-96 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1674 1685 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4800 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00455 Putative AMP-binding domain signature. 633 644 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF52777 221 462 4.89E-58 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SMART SM00823 Phosphopantetheine attachment site 2045 2114 0.004 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SMART SM00823 Phosphopantetheine attachment site 990 1059 1.1E-9 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00550 Phosphopantetheine attachment site 992 1054 3.3E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Pfam PF00550 Phosphopantetheine attachment site 2050 2109 8.4E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.300.30 880 993 6.7E-33 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.30.300.30 1930 2048 1.5E-28 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1014 1029 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4800 4423d24235ed1db1785263104e0f4281 2390 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2069 2084 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.980 1527 1683 2.6E-39 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.980 488 641 9.0E-49 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 PANTHER PTHR24095:SF137 39 2016 0.0 T 19-04-2016 AMED_4800 4423d24235ed1db1785263104e0f4281 2390 SUPERFAMILY SSF47336 2038 2111 3.01E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.1820 2117 2233 1.4E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4800 4423d24235ed1db1785263104e0f4281 2390 Gene3D G3DSA:3.40.50.1820 2308 2380 1.4E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PANTHER PTHR10066 426 566 7.3E-133 T 19-04-2016 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PRINTS PR00132 Glycosyl hydrolase family 2 signature 322 336 5.4E-11 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PRINTS PR00132 Glycosyl hydrolase family 2 signature 444 459 5.4E-11 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PRINTS PR00132 Glycosyl hydrolase family 2 signature 353 371 5.4E-11 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PRINTS PR00132 Glycosyl hydrolase family 2 signature 131 146 5.4E-11 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PANTHER PTHR10066:SF71 426 566 7.3E-133 T 19-04-2016 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 SUPERFAMILY SSF49303 210 310 4.6E-13 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Pfam PF00703 Glycosyl hydrolases family 2 215 310 6.4E-12 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PANTHER PTHR10066 15 399 7.3E-133 T 19-04-2016 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 444 458 - T 19-04-2016 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Gene3D G3DSA:2.60.40.320 190 311 7.1E-25 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Gene3D G3DSA:3.20.20.80 318 598 4.5E-53 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Gene3D G3DSA:2.60.40.920 611 716 3.5E-5 T 19-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AMED_7410 5336856f2b229a29948bb3b0762edcca 731 PANTHER PTHR10066:SF71 15 399 7.3E-133 T 19-04-2016 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Gene3D G3DSA:2.60.120.260 35 189 3.1E-42 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 43 198 9.4E-20 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 SUPERFAMILY SSF51445 318 598 2.99E-51 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7410 5336856f2b229a29948bb3b0762edcca 731 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 320 488 8.9E-25 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7410 5336856f2b229a29948bb3b0762edcca 731 SUPERFAMILY SSF49785 33 201 1.19E-43 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2558 2d20c181aa403db0d3515a5fb155b3fe 262 PANTHER PTHR11941:SF62 4 259 3.9E-150 T 19-04-2016 AMED_2558 2d20c181aa403db0d3515a5fb155b3fe 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 261 2.4E-54 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_2558 2d20c181aa403db0d3515a5fb155b3fe 262 PANTHER PTHR11941 4 259 3.9E-150 T 19-04-2016 AMED_2558 2d20c181aa403db0d3515a5fb155b3fe 262 Gene3D G3DSA:1.10.12.10 206 262 3.1E-18 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_2558 2d20c181aa403db0d3515a5fb155b3fe 262 Gene3D G3DSA:3.90.226.10 6 199 7.5E-60 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2558 2d20c181aa403db0d3515a5fb155b3fe 262 SUPERFAMILY SSF52096 5 262 2.41E-76 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_1420 3b0fa616e66e028db2fef50c7b1eb661 185 SUPERFAMILY SSF82607 21 109 9.42E-9 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1420 3b0fa616e66e028db2fef50c7b1eb661 185 Pfam PF02575 YbaB/EbfC DNA-binding family 25 109 2.3E-9 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1420 3b0fa616e66e028db2fef50c7b1eb661 185 Gene3D G3DSA:3.30.1310.10 20 108 4.7E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 208 4.8E-22 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PANTHER PTHR24322 424 548 1.9E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PANTHER PTHR24322 564 595 1.9E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 7 674 0.0 T 19-04-2016 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 SMART SM01007 8 210 1.4E-33 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PANTHER PTHR24322:SF328 424 548 1.9E-40 T 19-04-2016 AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PANTHER PTHR24322:SF328 564 595 1.9E-40 T 19-04-2016 AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 426 668 2.5E-47 T 19-04-2016 AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 Gene3D G3DSA:3.40.50.720 399 669 4.7E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 585 602 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 490 501 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 632 652 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 421 438 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 564 583 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 538 554 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 SUPERFAMILY SSF53639 5 216 4.71E-29 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 SUPERFAMILY SSF51735 410 671 1.67E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4545 549232730b549d3b1b1f3dc829ef7309 674 Gene3D G3DSA:3.40.225.10 8 215 2.8E-29 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 SUPERFAMILY SSF46689 12 82 1.64E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 4.2E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 4.2E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 2.5E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 PANTHER PTHR30055:SF47 2 186 1.7E-31 T 19-04-2016 AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 Gene3D G3DSA:1.10.357.10 9 193 7.1E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 SUPERFAMILY SSF48498 85 193 1.44E-26 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8436 9133a1828b1f092dd89086a42c6d0f04 198 PANTHER PTHR30055 2 186 1.7E-31 T 19-04-2016 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 156 3.7E-47 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 Gene3D G3DSA:1.10.1740.10 4 75 6.3E-16 T 19-04-2016 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 Pfam PF08281 Sigma-70, region 4 100 152 2.2E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 Gene3D G3DSA:1.10.10.10 94 156 4.0E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 154 5.1E-24 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 Pfam PF04542 Sigma-70 region 2 9 74 1.2E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 PANTHER PTHR30173 3 153 4.3E-25 T 19-04-2016 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 SUPERFAMILY SSF88659 84 156 2.24E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5348 6db82342dfd114ae57ab93baa5a5102d 167 SUPERFAMILY SSF88946 5 80 1.41E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8343 fc274c34cc317d20ad697dd69c567feb 352 PANTHER PTHR12526:SF353 108 349 9.5E-34 T 19-04-2016 AMED_8343 fc274c34cc317d20ad697dd69c567feb 352 Pfam PF00534 Glycosyl transferases group 1 165 320 9.0E-19 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_8343 fc274c34cc317d20ad697dd69c567feb 352 SUPERFAMILY SSF53756 18 343 3.81E-40 T 19-04-2016 AMED_8343 fc274c34cc317d20ad697dd69c567feb 352 Gene3D G3DSA:3.40.50.2000 162 320 1.5E-20 T 19-04-2016 AMED_8343 fc274c34cc317d20ad697dd69c567feb 352 PANTHER PTHR12526 108 349 9.5E-34 T 19-04-2016 AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 SUPERFAMILY SSF52096 15 236 6.37E-35 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 TIGRFAM TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase 7 539 2.3E-248 T 19-04-2016 IPR017633 Benzoyl-CoA-dihydrodiol lyase MetaCyc: PWY-1361 AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 PANTHER PTHR11941 4 236 2.9E-29 T 19-04-2016 AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 Gene3D G3DSA:3.90.226.10 6 233 1.0E-37 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 PANTHER PTHR11941:SF54 4 236 2.9E-29 T 19-04-2016 AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 SUPERFAMILY SSF52096 286 529 3.05E-13 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 Pfam PF00378 Enoyl-CoA hydratase/isomerase 48 238 5.5E-23 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_8611 36fd9d396ed3e82c6508aad9f2994d98 539 Gene3D G3DSA:3.90.226.10 306 465 2.9E-7 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.4E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.4E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 1.4E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.4E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.4E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.4E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 182 3.2E-4 T 19-04-2016 AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 SUPERFAMILY SSF51735 9 237 5.27E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 8.3E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 8.3E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 8.3E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 237 5.5E-53 T 19-04-2016 AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PANTHER PTHR24322 147 177 5.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 PANTHER PTHR24322 14 131 5.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3375 d81bfd48ffe95bce1e0c0ec355ea7c81 255 Gene3D G3DSA:3.40.50.720 6 237 1.3E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6684 ab4dea625e8358ebf488ef116079cb77 298 PANTHER PTHR22911:SF61 19 292 1.6E-37 T 19-04-2016 AMED_6684 ab4dea625e8358ebf488ef116079cb77 298 Pfam PF00892 EamA-like transporter family 162 295 3.5E-8 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_6684 ab4dea625e8358ebf488ef116079cb77 298 Pfam PF00892 EamA-like transporter family 17 149 7.0E-9 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_6684 ab4dea625e8358ebf488ef116079cb77 298 SUPERFAMILY SSF103481 201 296 1.44E-11 T 19-04-2016 AMED_6684 ab4dea625e8358ebf488ef116079cb77 298 PANTHER PTHR22911 19 292 1.6E-37 T 19-04-2016 AMED_6684 ab4dea625e8358ebf488ef116079cb77 298 SUPERFAMILY SSF103481 49 151 9.55E-14 T 19-04-2016 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 729 743 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1136 1150 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 683 697 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 PANTHER PTHR22847:SF50 557 1195 1.2E-134 T 19-04-2016 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Gene3D G3DSA:2.130.10.10 807 1036 2.5E-67 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SUPERFAMILY SSF50978 1060 1198 9.7E-35 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SUPERFAMILY SSF50978 755 951 6.11E-77 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SUPERFAMILY SSF50978 978 1092 6.11E-77 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 864 878 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Gene3D G3DSA:2.130.10.10 574 794 2.5E-59 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1181 1195 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 638 652 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 1111 1149 4.6E-6 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 749 788 1.8E-9 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 703 742 6.2E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 657 696 4.4E-9 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 1155 1194 2.3E-10 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 879 915 0.21 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 918 957 2.4E-11 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 1052 1092 4.6E-10 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 838 877 8.7E-11 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 1009 1047 0.0073 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 792 833 0.017 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 964 1003 0.13 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 614 651 3.7E-4 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SMART SM00320 569 608 5.7E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SUPERFAMILY SSF50978 574 832 2.2E-62 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 PRINTS PR00320 G protein beta WD-40 repeat signature 683 697 5.9E-9 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 PRINTS PR00320 G protein beta WD-40 repeat signature 1079 1093 5.9E-9 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 PRINTS PR00320 G protein beta WD-40 repeat signature 864 878 5.9E-9 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 PANTHER PTHR22847 557 1195 1.2E-134 T 19-04-2016 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1079 1093 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1034 1048 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 SUPERFAMILY SSF52540 102 310 5.0E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 775 789 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Gene3D G3DSA:3.40.50.300 98 141 2.0E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 756 788 1.4E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 1119 1149 5.3E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 1060 1092 4.5E-9 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 883 913 0.003 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 620 651 0.0046 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 663 696 3.9E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 808 832 0.0083 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 710 742 2.2E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 841 877 5.8E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 576 608 7.8E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 1021 1047 0.054 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 924 957 4.6E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Pfam PF00400 WD domain, G-beta repeat 1160 1194 7.0E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 Gene3D G3DSA:2.130.10.10 1037 1218 6.7E-42 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_3611 bd5921f6bd90e6b2b8d35322457a0d0d 1230 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 944 958 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_6736 581f6b7c4ed197e332cc1f1dd0477337 317 Gene3D G3DSA:3.40.50.1820 73 312 1.1E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6736 581f6b7c4ed197e332cc1f1dd0477337 317 Pfam PF00756 Putative esterase 83 211 3.4E-8 T 19-04-2016 IPR000801 Putative esterase AMED_6736 581f6b7c4ed197e332cc1f1dd0477337 317 SUPERFAMILY SSF53474 74 312 1.65E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 Gene3D G3DSA:3.40.50.1820 3 343 6.7E-104 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 Pfam PF06441 Epoxide hydrolase N terminus 3 95 2.3E-16 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PANTHER PTHR21661 3 344 1.4E-43 T 19-04-2016 AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 SUPERFAMILY SSF53474 3 342 1.57E-75 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PIRSF PIRSF001112 2 344 5.1E-62 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PANTHER PTHR21661:SF35 3 344 1.4E-43 T 19-04-2016 AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PRINTS PR00412 Epoxide hydrolase signature 86 104 7.0E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PRINTS PR00412 Epoxide hydrolase signature 319 341 7.0E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_2257 a7dc38e0e5b6ebf4443cbfe899aac35d 346 PRINTS PR00412 Epoxide hydrolase signature 163 176 7.0E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 4.1E-45 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 114 2.1E-30 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 SUPERFAMILY SSF56645 9 239 3.01E-75 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 Gene3D G3DSA:2.40.110.10 119 216 1.7E-36 T 19-04-2016 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 119 215 8.7E-27 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 SUPERFAMILY SSF47203 225 377 3.7E-51 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 Gene3D G3DSA:1.20.140.10 217 377 5.1E-60 T 19-04-2016 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 Gene3D G3DSA:1.10.540.10 9 116 2.0E-32 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 121 133 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_2143 5651c969c63d8fa57d423f82c6e92560 378 PANTHER PTHR10909 8 377 2.7E-129 T 19-04-2016 AMED_2716 0109074938475dafe5745013c0e1cd62 275 Gene3D G3DSA:3.40.192.10 1 100 7.0E-32 T 19-04-2016 AMED_2716 0109074938475dafe5745013c0e1cd62 275 SUPERFAMILY SSF51735 96 265 7.4E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2716 0109074938475dafe5745013c0e1cd62 275 TIGRFAM TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase 1 262 6.8E-67 T 19-04-2016 IPR010110 Shikimate dehydrogenase, AroM-type GO:0004764|GO:0005737|GO:0055114 KEGG: 00400+1.1.1.25+4.2.1.10+2.7.1.71+2.5.1.19+4.2.3.4|MetaCyc: PWY-6163|MetaCyc: PWY-6164|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053|UniPathway: UPA00053|UniPathway: UPA00053|UniPathway: UPA00053|UniPathway: UPA00053 AMED_2716 0109074938475dafe5745013c0e1cd62 275 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 1 83 2.8E-22 T 19-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2716 0109074938475dafe5745013c0e1cd62 275 SUPERFAMILY SSF53223 1 95 1.9E-23 T 19-04-2016 AMED_2716 0109074938475dafe5745013c0e1cd62 275 Gene3D G3DSA:3.40.50.720 101 265 1.1E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2716 0109074938475dafe5745013c0e1cd62 275 PANTHER PTHR21089 1 274 2.3E-67 T 19-04-2016 AMED_2716 0109074938475dafe5745013c0e1cd62 275 PANTHER PTHR21089:SF1 1 274 2.3E-67 T 19-04-2016 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 Gene3D G3DSA:1.20.1250.20 244 438 6.6E-27 T 19-04-2016 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 Gene3D G3DSA:1.20.1250.20 22 220 6.9E-24 T 19-04-2016 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 PANTHER PTHR23508 10 437 2.5E-226 T 19-04-2016 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 ProSitePatterns PS00216 Sugar transport proteins signature 1. 81 97 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 Pfam PF07690 Major Facilitator Superfamily 34 377 5.0E-29 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 SUPERFAMILY SSF103473 22 439 1.28E-68 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4942 4bcaea39b2741df7eddf17c22080f526 441 PANTHER PTHR23508:SF4 10 437 2.5E-226 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 15 306 5.5E-140 T 19-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 AMED_6659 ae961d9845f458202995ed808f67529f 306 PANTHER PTHR23293:SF6 248 306 3.4E-69 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 PANTHER PTHR23293:SF6 4 162 3.4E-69 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 PANTHER PTHR23293:SF6 182 215 3.4E-69 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 Gene3D G3DSA:3.40.50.620 247 254 1.9E-51 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6659 ae961d9845f458202995ed808f67529f 306 Gene3D G3DSA:3.40.50.620 7 214 1.9E-51 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6659 ae961d9845f458202995ed808f67529f 306 PANTHER PTHR23293 248 306 3.4E-69 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 PANTHER PTHR23293 4 162 3.4E-69 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 PANTHER PTHR23293 182 215 3.4E-69 T 19-04-2016 AMED_6659 ae961d9845f458202995ed808f67529f 306 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 260 1.5E-45 T 19-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 AMED_6659 ae961d9845f458202995ed808f67529f 306 PIRSF PIRSF002936 7 306 3.3E-134 T 19-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 AMED_6659 ae961d9845f458202995ed808f67529f 306 SUPERFAMILY SSF52402 10 213 5.51E-64 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3054 3230 3.0E-48 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1338 1513 1.8E-52 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.366.10 2225 2346 4.1E-73 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.366.10 2413 2524 4.1E-73 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.366.10 747 856 9.2E-79 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.366.10 547 681 9.2E-79 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 PANTHER PTHR11712:SF242 1338 3410 0.0 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF53901 28 401 2.56E-102 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3364 3379 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1638 1653 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:1.10.1200.10 1610 1685 2.0E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:1.10.1200.10 3335 3410 2.3E-20 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM01294 1612 1679 4.8E-6 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.30.70.250 2351 2412 7.2E-7 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.30.70.250 686 746 2.6E-7 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF08990 Erythronolide synthase docking 2 24 1.2E-6 T 19-04-2016 IPR015083 Polyketide synthase, docking domain GO:0016740|GO:0048037 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00826 2585 2748 2.7E-80 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00826 918 1081 6.5E-84 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.47.10 292 455 8.6E-67 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.47.10 1963 2129 2.2E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.47.10 34 291 7.3E-89 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.47.10 1704 1962 2.2E-88 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF47336 3330 3410 1.24E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF47336 1605 1717 7.2E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1958 2075 1.9E-44 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 287 402 2.5E-44 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1702 1950 1.0E-86 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 31 279 4.4E-85 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF14765 Polyketide synthase dehydratase 918 1194 5.4E-60 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF14765 Polyketide synthase dehydratase 2585 2867 1.9E-59 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.50.720 3056 3238 6.2E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00698 Acyl transferase domain 554 843 3.6E-58 T 19-04-2016 IPR014043 Acyl transferase AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00698 Acyl transferase domain 2228 2540 4.1E-82 T 19-04-2016 IPR014043 Acyl transferase AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 3054 3270 3.36E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 1200 1328 1.1E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF52151 748 840 7.85E-72 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF52151 552 687 7.85E-72 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2078 2171 5.7E-13 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 405 491 1.7E-12 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Gene3D G3DSA:3.40.50.720 1336 1545 3.1E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF08659 KR domain 1338 1511 2.3E-52 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF08659 KR domain 3055 3228 7.3E-50 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 2877 3043 1.46E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00823 Phosphopantetheine attachment site 1611 1683 4.3E-32 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00823 Phosphopantetheine attachment site 3337 3409 1.5E-29 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF51735 1335 1548 4.57E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00825 Beta-ketoacyl synthase 33 455 1.5E-213 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00825 Beta-ketoacyl synthase 1704 2128 1.3E-212 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF55048 686 747 6.8E-12 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 556 852 8.5E-117 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2230 2521 3.0E-116 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF55048 2351 2413 1.05E-11 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 PANTHER PTHR11712 1338 3410 0.0 T 19-04-2016 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF52151 2226 2352 3.66E-68 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF52151 2414 2517 3.66E-68 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00550 Phosphopantetheine attachment site 3339 3405 1.8E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 Pfam PF00550 Phosphopantetheine attachment site 1613 1679 2.2E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 192 208 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 1863 1879 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0621 67e2cdf75c5c5dfde26a7c346c16cc4b 3413 SUPERFAMILY SSF53901 1699 2074 1.74E-101 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 Gene3D G3DSA:3.40.640.10 57 309 8.7E-72 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 PANTHER PTHR11986:SF87 1 433 9.6E-252 T 19-04-2016 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 Pfam PF00202 Aminotransferase class-III 24 426 1.5E-87 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 Gene3D G3DSA:3.90.1150.10 310 428 4.4E-33 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 PANTHER PTHR11986 1 433 9.6E-252 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0279 58b2d87d0259a67e753ece87c5385fb5 433 SUPERFAMILY SSF53383 5 428 2.99E-117 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2367 24a9dac092bd16c3e33c80c93b90a6d1 80 Gene3D G3DSA:1.10.10.10 10 74 4.9E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2367 24a9dac092bd16c3e33c80c93b90a6d1 80 Pfam PF01638 HxlR-like helix-turn-helix 11 74 4.5E-17 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_2367 24a9dac092bd16c3e33c80c93b90a6d1 80 PANTHER PTHR33204 10 73 5.1E-16 T 19-04-2016 AMED_2367 24a9dac092bd16c3e33c80c93b90a6d1 80 PANTHER PTHR33204:SF13 10 73 5.1E-16 T 19-04-2016 AMED_2367 24a9dac092bd16c3e33c80c93b90a6d1 80 SUPERFAMILY SSF46785 11 75 5.94E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2291 13fbe3408f17f307edd44e585b17086f 519 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 40 498 1.9E-171 T 19-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 Pfam PF00425 chorismate binding enzyme 237 490 2.4E-97 T 19-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal AMED_2291 13fbe3408f17f307edd44e585b17086f 519 Gene3D G3DSA:3.60.120.10 27 503 1.4E-175 T 19-04-2016 IPR005801 ADC synthase GO:0009058 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 PANTHER PTHR11236:SF9 13 506 3.0E-237 T 19-04-2016 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 Pfam PF04715 Anthranilate synthase component I, N terminal region 41 181 2.9E-32 T 19-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 PANTHER PTHR11236 13 506 3.0E-237 T 19-04-2016 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 SUPERFAMILY SSF56322 29 498 2.35E-155 T 19-04-2016 IPR005801 ADC synthase GO:0009058 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 447 461 6.9E-23 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 338 351 6.9E-23 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 432 446 6.9E-23 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_2291 13fbe3408f17f307edd44e585b17086f 519 PRINTS PR00095 Anthranilate synthase component I signature 352 365 6.9E-23 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 236 3.6E-12 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 Gene3D G3DSA:3.30.360.10 132 342 5.2E-38 T 19-04-2016 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 SUPERFAMILY SSF55347 131 286 1.96E-30 T 19-04-2016 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 PANTHER PTHR22604 1 348 1.1E-101 T 19-04-2016 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 PANTHER PTHR22604:SF53 1 348 1.1E-101 T 19-04-2016 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 Gene3D G3DSA:3.40.50.720 2 131 2.8E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9289 da24d68523491fd1bee4400faa5cc235 348 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 122 1.6E-18 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_9289 da24d68523491fd1bee4400faa5cc235 348 SUPERFAMILY SSF51735 3 159 2.58E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 PANTHER PTHR21343 2 442 2.5E-151 T 19-04-2016 AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 SUPERFAMILY SSF52540 4 196 5.32E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 4 437 1.1E-127 T 19-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 Gene3D G3DSA:3.40.50.300 4 194 5.5E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 PANTHER PTHR21343:SF6 2 442 2.5E-151 T 19-04-2016 AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 Gene3D G3DSA:3.40.50.880 248 441 2.9E-27 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 249 426 9.6E-26 T 19-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 172 2.6E-23 T 19-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 2 429 40.671 T 19-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AMED_7052 a845fc25b78d98ae16183505b1cdd23d 445 SUPERFAMILY SSF52317 246 439 1.59E-29 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 PANTHER PTHR21152 1 373 3.9E-155 T 19-04-2016 AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 Gene3D G3DSA:3.90.1150.10 269 373 1.3E-6 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 7 373 24.215 T 19-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 Gene3D G3DSA:3.40.640.10 21 267 6.4E-51 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 Pfam PF00266 Aminotransferase class-V 141 332 4.6E-12 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 PIRSF PIRSF000525 4 374 1.9E-76 T 19-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 SUPERFAMILY SSF53383 14 372 5.39E-75 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 PANTHER PTHR21152:SF20 1 373 3.9E-155 T 19-04-2016 AMED_8460 eeae4a3fc8e0ab772463f2f951af76ed 374 TIGRFAM TIGR01366 serC_3: putative phosphoserine aminotransferase 13 373 1.3E-194 T 19-04-2016 IPR006272 Phosphoserine aminotransferase, Mycobacterial-type GO:0004648|GO:0006564|GO:0009058 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 AMED_4301 3c00e1dba45d940cfc68356013427bd4 364 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 11 271 4.4E-46 T 19-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4301 3c00e1dba45d940cfc68356013427bd4 364 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 10 290 1.6E-75 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4301 3c00e1dba45d940cfc68356013427bd4 364 SUPERFAMILY SSF55931 5 361 1.86E-83 T 19-04-2016 AMED_4301 3c00e1dba45d940cfc68356013427bd4 364 PANTHER PTHR36510 1 359 6.6E-88 T 19-04-2016 AMED_4301 3c00e1dba45d940cfc68356013427bd4 364 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 364 69.048 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4761 109ab767431b81ac7671275304f7c82f 513 Pfam PF14698 Argininosuccinate lyase C-terminal 372 432 2.7E-9 T 19-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PANTHER PTHR11444:SF3 44 409 2.2E-68 T 19-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PANTHER PTHR11444 44 409 2.2E-68 T 19-04-2016 IPR000362 Fumarate lyase family AMED_4761 109ab767431b81ac7671275304f7c82f 513 Pfam PF00206 Lyase 104 308 4.2E-28 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_4761 109ab767431b81ac7671275304f7c82f 513 Gene3D G3DSA:1.20.200.10 115 394 5.7E-59 T 19-04-2016 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 239 266 1.5E-15 T 19-04-2016 IPR000362 Fumarate lyase family AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 1.5E-15 T 19-04-2016 IPR000362 Fumarate lyase family AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 283 299 1.5E-15 T 19-04-2016 IPR000362 Fumarate lyase family AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00149 Fumarate lyase superfamily signature 110 128 1.5E-15 T 19-04-2016 IPR000362 Fumarate lyase family AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 201 217 5.8E-22 T 19-04-2016 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 5.8E-22 T 19-04-2016 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 283 299 5.8E-22 T 19-04-2016 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 239 263 5.8E-22 T 19-04-2016 AMED_4761 109ab767431b81ac7671275304f7c82f 513 PRINTS PR00145 Argininosuccinate lyase family signature 109 131 5.8E-22 T 19-04-2016 AMED_4761 109ab767431b81ac7671275304f7c82f 513 SUPERFAMILY SSF48557 41 413 1.13E-78 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PANTHER PTHR26402 2 201 1.6E-79 T 19-04-2016 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 195 7.5E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SUPERFAMILY SSF46894 128 200 9.18E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PANTHER PTHR26402:SF137 2 201 1.6E-79 T 19-04-2016 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Gene3D G3DSA:3.40.50.2300 2 144 1.4E-29 T 19-04-2016 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SMART SM00421 138 195 1.2E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Gene3D G3DSA:1.10.10.10 145 200 1.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 Pfam PF00072 Response regulator receiver domain 4 115 7.4E-20 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 5.0E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 5.0E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 5.0E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 155 182 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SUPERFAMILY SSF52172 2 127 6.69E-25 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6886 400e47ba54f5e7f5ffcdf51a2a3ee5b0 201 SMART SM00448 2 115 2.0E-19 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 63 71 3.8E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 103 114 3.8E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 20 33 3.8E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 139 148 3.8E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PRINTS PR00315 GTP-binding elongation factor signature 87 97 3.8E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.40.50.300 14 205 5.9E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6681 7af60326a963f6059baf5bb7716df091 616 Pfam PF00009 Elongation factor Tu GTP binding domain 18 194 1.4E-51 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PANTHER PTHR23115 410 609 1.2E-268 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PANTHER PTHR23115 1 386 1.2E-268 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF54980 304 383 8.27E-19 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_6681 7af60326a963f6059baf5bb7716df091 616 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_6681 7af60326a963f6059baf5bb7716df091 616 Pfam PF06421 GTP-binding protein LepA C-terminus 502 606 3.2E-48 T 19-04-2016 IPR013842 GTP-binding protein LepA, C-terminal AMED_6681 7af60326a963f6059baf5bb7716df091 616 Pfam PF00679 Elongation factor G C-terminus 412 498 1.2E-20 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_6681 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF54980 412 507 1.77E-22 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_6681 7af60326a963f6059baf5bb7716df091 616 SMART SM00838 411 495 1.7E-4 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_6681 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF50447 195 294 1.39E-17 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_6681 7af60326a963f6059baf5bb7716df091 616 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 20 189 4.5E-19 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.30.70.870 304 381 2.7E-25 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 Hamap MF_00071 Elongation factor 4 [lepA]. 1 611 282.873 T 19-04-2016 IPR006297 Elongation factor 4 GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:2.40.30.10 206 302 1.3E-19 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 Gene3D G3DSA:3.30.70.240 414 503 7.6E-20 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_6681 7af60326a963f6059baf5bb7716df091 616 PANTHER PTHR23115:SF97 1 386 1.2E-268 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 TIGRFAM TIGR01393 lepA: elongation factor 4 17 608 9.9E-296 T 19-04-2016 IPR006297 Elongation factor 4 GO:0005525 AMED_6681 7af60326a963f6059baf5bb7716df091 616 PANTHER PTHR23115:SF97 410 609 1.2E-268 T 19-04-2016 AMED_6681 7af60326a963f6059baf5bb7716df091 616 SUPERFAMILY SSF52540 12 218 5.43E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 Gene3D G3DSA:1.10.287.130 353 412 2.3E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 425 1.0E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 Gene3D G3DSA:3.30.565.10 413 581 4.3E-49 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 471 581 1.2E-28 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 SMART SM00388 361 425 2.2E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 SUPERFAMILY SSF55874 414 580 1.83E-48 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 SUPERFAMILY SSF47384 344 426 2.16E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 SMART SM00387 470 582 8.3E-46 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 PANTHER PTHR24423 238 263 6.9E-84 T 19-04-2016 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 PANTHER PTHR24423 308 583 6.9E-84 T 19-04-2016 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 Pfam PF00672 HAMP domain 295 354 8.2E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 535 1.7E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 566 579 1.7E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 1.7E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7578 c185b73d8468fd09409be62a9db1cb3d 602 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 521 1.7E-18 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7970 e2db413a40f88c5b3b1ab78893bf4938 308 SUPERFAMILY SSF111331 1 308 5.67E-52 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_7970 e2db413a40f88c5b3b1ab78893bf4938 308 Pfam PF00781 Diacylglycerol kinase catalytic domain 3 121 1.5E-26 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_7970 e2db413a40f88c5b3b1ab78893bf4938 308 PANTHER PTHR12358 1 308 7.8E-82 T 19-04-2016 AMED_7970 e2db413a40f88c5b3b1ab78893bf4938 308 SMART SM00046 2 136 2.7E-15 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_7970 e2db413a40f88c5b3b1ab78893bf4938 308 PANTHER PTHR12358:SF34 1 308 7.8E-82 T 19-04-2016 AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 Pfam PF00990 Diguanylate cyclase, GGDEF domain 240 404 2.5E-41 T 19-04-2016 IPR000160 GGDEF domain AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 SUPERFAMILY SSF55073 246 406 2.9E-44 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 Gene3D G3DSA:3.30.70.270 242 407 1.8E-50 T 19-04-2016 AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 PANTHER PTHR10799 275 406 3.2E-32 T 19-04-2016 AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 236 406 2.5E-46 T 19-04-2016 IPR000160 GGDEF domain AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 PANTHER PTHR10799:SF750 275 406 3.2E-32 T 19-04-2016 AMED_1874 6ceee24eb016402ec67ff1d380a8554f 407 SMART SM00267 229 407 6.1E-48 T 19-04-2016 IPR000160 GGDEF domain AMED_4138 eea5bd23fbb45b8bddf4ae20590a2177 164 SUPERFAMILY SSF82607 21 101 5.23E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_4138 eea5bd23fbb45b8bddf4ae20590a2177 164 Pfam PF02575 YbaB/EbfC DNA-binding family 21 102 4.6E-9 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_4138 eea5bd23fbb45b8bddf4ae20590a2177 164 Gene3D G3DSA:3.30.1310.10 4 97 3.8E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 122 207 6.9E-18 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 ProSitePatterns PS01242 Zinc finger FPG-type signature. 243 267 - T 19-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 Pfam PF06827 Zinc finger found in FPG and IleRS 240 268 5.9E-8 T 19-04-2016 IPR010663 Zinc finger, FPG/IleRS-type AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 SMART SM01232 122 214 7.0E-31 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 Gene3D G3DSA:1.10.8.50 123 268 1.7E-43 T 19-04-2016 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 SUPERFAMILY SSF81624 2 123 1.22E-22 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 PANTHER PTHR22993 8 268 6.8E-54 T 19-04-2016 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 Gene3D G3DSA:3.20.190.10 2 122 2.0E-13 T 19-04-2016 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 PANTHER PTHR22993:SF18 8 268 6.8E-54 T 19-04-2016 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 SUPERFAMILY SSF57716 220 268 1.85E-13 T 19-04-2016 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 SMART SM00898 2 108 3.2E-18 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_6810 d3416db71e5ad2b3cd751391a33f7e37 268 SUPERFAMILY SSF46946 121 206 1.35E-22 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 SMART SM00052 461 689 1.2E-9 T 19-04-2016 IPR001633 EAL domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 Gene3D G3DSA:3.30.450.20 161 274 7.9E-18 T 19-04-2016 AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 164 285 3.0E-10 T 19-04-2016 IPR000014 PAS domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 PANTHER PTHR10799 177 561 5.2E-29 T 19-04-2016 AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 Gene3D G3DSA:3.20.20.450 466 689 4.0E-31 T 19-04-2016 IPR001633 EAL domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 SUPERFAMILY SSF55073 295 447 1.1E-29 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 SUPERFAMILY SSF55785 155 274 8.53E-17 T 19-04-2016 IPR000014 PAS domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 SUPERFAMILY SSF141868 470 689 8.76E-27 T 19-04-2016 IPR001633 EAL domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 Pfam PF00989 PAS fold 165 273 6.1E-9 T 19-04-2016 IPR013767 PAS fold GO:0006355 AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 286 447 1.8E-27 T 19-04-2016 IPR000160 GGDEF domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 Pfam PF00563 EAL domain 472 689 3.7E-25 T 19-04-2016 IPR001633 EAL domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 SMART SM00267 279 451 3.7E-38 T 19-04-2016 IPR000160 GGDEF domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 Pfam PF00990 Diguanylate cyclase, GGDEF domain 290 446 1.2E-30 T 19-04-2016 IPR000160 GGDEF domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 SMART SM00091 164 230 3.4E-11 T 19-04-2016 IPR000014 PAS domain AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 Gene3D G3DSA:3.30.70.270 292 455 1.1E-36 T 19-04-2016 AMED_4352 ad96ed56c0ec096d1102a16f6ed80161 696 PANTHER PTHR10799:SF710 177 561 5.2E-29 T 19-04-2016 AMED_0252 f58c70b3c0cb1729c563d3de8e20c328 266 SUPERFAMILY SSF50494 24 240 3.53E-19 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_0252 f58c70b3c0cb1729c563d3de8e20c328 266 Gene3D G3DSA:2.40.10.10 64 143 3.1E-10 T 19-04-2016 AMED_0252 f58c70b3c0cb1729c563d3de8e20c328 266 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 85 90 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_6918 072d7746436af7e62061e507166729d6 324 Gene3D G3DSA:1.10.3720.10 92 320 4.1E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6918 072d7746436af7e62061e507166729d6 324 PANTHER PTHR30193:SF2 19 323 1.9E-104 T 19-04-2016 AMED_6918 072d7746436af7e62061e507166729d6 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 319 1.7E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6918 072d7746436af7e62061e507166729d6 324 SUPERFAMILY SSF161098 86 310 1.13E-59 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6918 072d7746436af7e62061e507166729d6 324 PANTHER PTHR30193 19 323 1.9E-104 T 19-04-2016 AMED_0261 17eb7968b239b52918401eeb87835016 202 Gene3D G3DSA:1.10.287.70 102 201 9.6E-4 T 19-04-2016 AMED_0261 17eb7968b239b52918401eeb87835016 202 SUPERFAMILY SSF81324 142 201 2.35E-5 T 19-04-2016 AMED_0261 17eb7968b239b52918401eeb87835016 202 Pfam PF07077 Protein of unknown function (DUF1345) 31 195 7.7E-9 T 19-04-2016 IPR009781 Protein of unknown function DUF1345 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 PIRSF PIRSF004532 1 315 2.1E-147 T 19-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 SUPERFAMILY SSF56655 1 307 2.14E-110 T 19-04-2016 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 PANTHER PTHR30447:SF0 1 318 2.2E-175 T 19-04-2016 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 1 304 1.7E-141 T 19-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 Gene3D G3DSA:3.30.540.10 168 315 1.0E-46 T 19-04-2016 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 Gene3D G3DSA:3.30.540.10 1 167 9.5E-63 T 19-04-2016 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 PANTHER PTHR30447 1 318 2.2E-175 T 19-04-2016 AMED_8059 3dfd3722ef451846194d6efc440025b2 333 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 308 7.9E-114 T 19-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 Gene3D G3DSA:3.40.50.720 235 403 4.0E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 PANTHER PTHR11374 1 396 1.1E-212 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 SUPERFAMILY SSF51735 2 196 1.58E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 Gene3D G3DSA:3.40.50.720 2 198 1.4E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 402 1.7E-11 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 402 2.4E-117 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 SUPERFAMILY SSF52413 307 421 6.54E-20 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 PANTHER PTHR11374:SF22 1 396 1.1E-212 T 19-04-2016 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 188 9.0E-55 T 19-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 PIRSF PIRSF500135 1 436 4.3E-205 T 19-04-2016 IPR028358 GDP-mannose 6-dehydrogenase GO:0042121|GO:0047919 KEGG: 00040+1.1.1.13|KEGG: 00051+1.1.1.132|KEGG: 00520+1.1.1.132|MetaCyc: PWY-6073|MetaCyc: PWY-6082|UniPathway: UPA00286 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 298 4.3E-27 T 19-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 SMART SM00984 317 422 1.9E-17 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 Gene3D G3DSA:1.20.5.100 204 232 5.4E-11 T 19-04-2016 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 PIRSF PIRSF000124 1 436 7.3E-128 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_0547 d81f49f8e64e51371d2146c0e83d6d17 436 SUPERFAMILY SSF48179 205 298 3.74E-25 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_4681 56a02e99cca1f8c479b4b3c5a0d12c30 253 Gene3D G3DSA:3.40.50.1110 1 186 8.9E-40 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4681 56a02e99cca1f8c479b4b3c5a0d12c30 253 SUPERFAMILY SSF52266 1 185 6.5E-38 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4681 56a02e99cca1f8c479b4b3c5a0d12c30 253 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 3 174 1.2E-27 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4681 56a02e99cca1f8c479b4b3c5a0d12c30 253 PANTHER PTHR30383 1 245 8.3E-71 T 19-04-2016 AMED_4681 56a02e99cca1f8c479b4b3c5a0d12c30 253 PANTHER PTHR30383:SF8 1 245 8.3E-71 T 19-04-2016 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 Pfam PF01494 FAD binding domain 1 314 7.7E-40 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 PANTHER PTHR13789:SF209 1 375 6.1E-98 T 19-04-2016 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 SUPERFAMILY SSF51905 263 348 1.8E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 SUPERFAMILY SSF51905 2 169 1.8E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 4.8E-18 T 19-04-2016 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 4.8E-18 T 19-04-2016 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 4.8E-18 T 19-04-2016 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 4.8E-18 T 19-04-2016 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 Gene3D G3DSA:3.50.50.60 264 343 7.5E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 Gene3D G3DSA:3.50.50.60 2 174 7.5E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4478 9c4fb7b379b8848851a0bf804ce03c70 399 PANTHER PTHR13789 1 375 6.1E-98 T 19-04-2016 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 141 153 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 Gene3D G3DSA:2.40.110.10 138 232 2.0E-31 T 19-04-2016 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 134 2.2E-20 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 139 232 1.7E-21 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 Gene3D G3DSA:1.20.140.10 233 394 1.0E-42 T 19-04-2016 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 350 369 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 PANTHER PTHR10909:SF280 13 393 9.6E-176 T 19-04-2016 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 248 391 8.3E-28 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 SUPERFAMILY SSF56645 12 244 1.83E-64 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 SUPERFAMILY SSF47203 246 395 1.56E-39 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 PANTHER PTHR10909 13 393 9.6E-176 T 19-04-2016 AMED_6370 a59e843fea86eb267c61ed935c586bd8 398 Gene3D G3DSA:1.10.540.10 12 137 5.6E-28 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Pfam PF03704 Bacterial transcriptional activator domain 96 241 1.0E-38 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:1.10.10.10 17 90 2.9E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF46894 11 89 5.67E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF48452 755 937 3.87E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00862 16 89 2.1E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 76 5.0E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SMART SM01043 96 241 2.1E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Pfam PF13401 AAA domain 276 363 2.1E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF52540 249 517 7.07E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 PANTHER PTHR35807 1 244 8.4E-49 T 19-04-2016 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:1.25.40.10 102 220 4.1E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SUPERFAMILY SSF48452 91 259 8.85E-37 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:3.40.50.300 261 383 2.7E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 Gene3D G3DSA:1.25.40.10 755 943 2.9E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 830 863 38.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 912 945 160.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 101 134 56.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 SMART SM00028 870 903 21.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 PRINTS PR00364 Disease resistance protein signature 279 294 1.4E-6 T 19-04-2016 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 PRINTS PR00364 Disease resistance protein signature 452 466 1.4E-6 T 19-04-2016 AMED_0199 8e17b441173923c74b7c6c119240bda2 1033 PRINTS PR00364 Disease resistance protein signature 346 360 1.4E-6 T 19-04-2016 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:3.40.50.300 327 387 6.6E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 SUPERFAMILY SSF46689 546 589 1.88E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:1.10.8.60 474 538 1.5E-6 T 19-04-2016 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 Pfam PF02954 Bacterial regulatory protein, Fis family 548 587 3.7E-13 T 19-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 SUPERFAMILY SSF52540 326 533 3.45E-14 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 553 570 2.0E-10 T 19-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 570 590 2.0E-10 T 19-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 Gene3D G3DSA:1.10.10.60 548 589 4.4E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4322 40a0c906656cf4224aa13d6d1fb0d7ea 594 PANTHER PTHR32071 459 589 4.8E-26 T 19-04-2016 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 19 42 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 Gene3D G3DSA:3.30.200.20 6 75 6.6E-20 T 19-04-2016 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 SMART SM00220 13 259 7.6E-50 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 Gene3D G3DSA:1.10.510.10 76 260 7.0E-40 T 19-04-2016 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 SUPERFAMILY SSF56112 9 332 8.09E-66 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 Pfam PF00069 Protein kinase domain 13 219 9.2E-42 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 PANTHER PTHR24362 3 277 8.2E-74 T 19-04-2016 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_3149 9ba53ad1eb33efe735b9836e7c2f417d 401 PANTHER PTHR24362:SF160 3 277 8.2E-74 T 19-04-2016 AMED_5779 5241b29d67893b74553e259aa9a8edc8 268 Pfam PF00753 Metallo-beta-lactamase superfamily 19 202 1.0E-9 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5779 5241b29d67893b74553e259aa9a8edc8 268 SUPERFAMILY SSF56281 19 242 1.19E-27 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5779 5241b29d67893b74553e259aa9a8edc8 268 PANTHER PTHR11935 9 254 6.6E-43 T 19-04-2016 AMED_5779 5241b29d67893b74553e259aa9a8edc8 268 SMART SM00849 17 202 3.7E-11 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5779 5241b29d67893b74553e259aa9a8edc8 268 PANTHER PTHR11935:SF5 9 254 6.6E-43 T 19-04-2016 AMED_5779 5241b29d67893b74553e259aa9a8edc8 268 Gene3D G3DSA:3.60.15.10 17 230 1.8E-25 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 SMART SM00065 133 287 1.3E-11 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 Gene3D G3DSA:3.30.565.10 396 452 6.0E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 PANTHER PTHR24421:SF10 281 496 2.8E-21 T 19-04-2016 AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 PANTHER PTHR24421 281 496 2.8E-21 T 19-04-2016 AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 Pfam PF07730 Histidine kinase 295 358 2.5E-11 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 SUPERFAMILY SSF55781 115 291 1.96E-24 T 19-04-2016 IPR029016 GAF domain-like AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 Pfam PF13185 GAF domain 131 278 1.5E-20 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 SUPERFAMILY SSF55781 4 128 1.6E-7 T 19-04-2016 IPR029016 GAF domain-like AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 SUPERFAMILY SSF55874 383 488 3.01E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 Gene3D G3DSA:3.30.450.40 114 290 1.8E-25 T 19-04-2016 IPR029016 GAF domain-like AMED_4378 6817b4885dde24e6d7f25103b00d76b8 500 Gene3D G3DSA:3.30.450.40 61 113 7.0E-4 T 19-04-2016 IPR029016 GAF domain-like AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 249 268 3.3E-8 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 180 198 3.3E-8 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 93 109 3.3E-8 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 300 319 3.3E-8 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 131 155 3.3E-8 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 146 304 2.7E-7 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PANTHER PTHR33371 2 317 6.5E-111 T 19-04-2016 AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 PANTHER PTHR33371:SF8 2 317 6.5E-111 T 19-04-2016 AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 15 294 8.7E-60 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2430 36aab6d1bc59ed188a25e9feff03d4f1 346 Pfam PF02470 MlaD protein 42 115 6.2E-16 T 19-04-2016 IPR003399 Mce/MlaD AMED_1669 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF50249 342 425 4.28E-26 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 432 460 5.2E-9 T 19-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF52113 626 700 4.91E-16 T 19-04-2016 IPR001357 BRCT domain AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 347 423 9.1E-30 T 19-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Hamap MF_01588 DNA ligase [ligA]. 28 698 50.758 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF56091 28 343 2.52E-113 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 30 343 3.9E-120 T 19-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 PIRSF PIRSF001604 23 702 2.5E-234 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 37 693 1.4E-238 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:3.40.50.10190 625 701 1.4E-21 T 19-04-2016 IPR001357 BRCT domain AMED_1669 258a07fba93687e43c6d95778e6ca819 726 SUPERFAMILY SSF47781 428 616 6.99E-49 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 PANTHER PTHR23389 5 565 2.0E-179 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:2.40.50.140 344 415 3.4E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Pfam PF12826 Helix-hairpin-helix motif 543 605 2.7E-22 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 SMART SM00532 29 474 4.5E-254 T 19-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 SMART SM00292 624 701 3.6E-11 T 19-04-2016 IPR001357 BRCT domain AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:3.30.470.30 142 277 1.6E-48 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:1.10.287.610 27 93 2.2E-26 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:1.10.150.20 461 518 9.4E-13 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 138 167 - T 19-04-2016 IPR018239 NAD-dependent DNA ligase, active site AMED_1669 258a07fba93687e43c6d95778e6ca819 726 PANTHER PTHR23389:SF9 5 565 2.0E-179 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Gene3D G3DSA:1.10.150.20 536 616 5.0E-28 T 19-04-2016 AMED_1669 258a07fba93687e43c6d95778e6ca819 726 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 627 693 1.4E-11 T 19-04-2016 IPR001357 BRCT domain AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 PANTHER PTHR30363 7 262 5.5E-72 T 19-04-2016 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 SMART SM00420 13 65 4.2E-17 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 SUPERFAMILY SSF46785 12 70 2.7E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 Gene3D G3DSA:1.10.10.10 4 63 2.9E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 45 63 1.2E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 31 45 1.2E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 Pfam PF08220 DeoR-like helix-turn-helix domain 13 64 9.0E-18 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 SUPERFAMILY SSF100950 83 240 2.09E-25 T 19-04-2016 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 Pfam PF00455 DeoR C terminal sensor domain 82 239 3.6E-47 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 SMART SM01134 79 241 1.2E-57 T 19-04-2016 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 ProSitePatterns PS00894 DeoR-type HTH domain signature. 13 47 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 PANTHER PTHR30363:SF1 7 262 5.5E-72 T 19-04-2016 AMED_3918 7116ab88880fbb78fe0307026bf22b90 268 Gene3D G3DSA:3.40.50.1360 83 223 7.6E-12 T 19-04-2016 AMED_6456 c2ebdd0001095854986bef3dd129a8ca 432 Gene3D G3DSA:3.40.50.2000 4 260 1.5E-12 T 19-04-2016 AMED_6456 c2ebdd0001095854986bef3dd129a8ca 432 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 173 404 1.0E-8 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_6456 c2ebdd0001095854986bef3dd129a8ca 432 Gene3D G3DSA:3.40.50.2000 261 407 4.0E-22 T 19-04-2016 AMED_6456 c2ebdd0001095854986bef3dd129a8ca 432 PANTHER PTHR11926 1 399 4.5E-56 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_6456 c2ebdd0001095854986bef3dd129a8ca 432 SUPERFAMILY SSF53756 3 423 1.19E-72 T 19-04-2016 AMED_6456 c2ebdd0001095854986bef3dd129a8ca 432 PANTHER PTHR11926:SF240 1 399 4.5E-56 T 19-04-2016 AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 PANTHER PTHR11732 6 282 2.8E-113 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 Gene3D G3DSA:3.20.20.100 14 282 6.1E-79 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 Pfam PF00248 Aldo/keto reductase family 19 281 2.1E-63 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 SUPERFAMILY SSF51430 10 282 4.19E-80 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 49 73 4.7E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 114 132 4.7E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 145 162 4.7E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 PRINTS PR00069 Aldo-keto reductase signature 216 240 4.7E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6634 eb806ebf4c733993f2cbea22acd46ca5 283 PANTHER PTHR11732:SF275 6 282 2.8E-113 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 SUPERFAMILY SSF81301 71 323 4.9E-55 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Pfam PF08335 GlnD PII-uridylyltransferase 846 989 8.7E-17 T 19-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Pfam PF08335 GlnD PII-uridylyltransferase 337 483 4.9E-34 T 19-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 88 315 2.4E-33 T 19-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 588 822 3.9E-62 T 19-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 SUPERFAMILY SSF81593 837 990 9.42E-34 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 SUPERFAMILY SSF81301 560 832 2.4E-69 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 PANTHER PTHR30621 1 991 8.2E-250 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 SUPERFAMILY SSF81593 328 484 1.88E-36 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 84 980 16.657 T 19-04-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Gene3D G3DSA:3.30.460.10 179 323 9.1E-44 T 19-04-2016 AMED_1227 00cbdcad7775bffa4d0419f0479c4d4c 992 Gene3D G3DSA:3.30.460.10 670 832 6.9E-57 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PANTHER PTHR22912 7 448 8.0E-171 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 Gene3D G3DSA:3.50.50.60 135 326 3.2E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 444 3.7E-25 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 Gene3D G3DSA:3.30.390.30 337 455 8.8E-31 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 SUPERFAMILY SSF51905 3 360 2.38E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 2.1E-39 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 2.1E-39 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 2.1E-39 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 2.1E-39 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.1E-39 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 SUPERFAMILY SSF55424 336 454 1.6E-29 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 317 2.6E-73 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 19-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 Gene3D G3DSA:3.50.50.60 6 134 3.2E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 455 4.9E-140 T 19-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PIRSF PIRSF000350 2 439 1.8E-72 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PANTHER PTHR22912:SF125 7 448 8.0E-171 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 439 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 397 412 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 9.3E-70 T 19-04-2016 AMED_2169 b0b96c616519109e2dc359959c6e579f 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 9.3E-70 T 19-04-2016 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 Pfam PF10509 Galactokinase galactose-binding signature 10 58 2.3E-20 T 19-04-2016 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 SUPERFAMILY SSF55060 217 390 2.06E-46 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 19-04-2016 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PANTHER PTHR10457 7 391 2.8E-97 T 19-04-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PANTHER PTHR10457:SF6 7 391 2.8E-97 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 27 45 5.2E-25 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 94 105 5.2E-25 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 275 289 5.2E-25 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00473 Galactokinase signature 113 131 5.2E-25 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 TIGRFAM TIGR00131 gal_kin: galactokinase 7 390 1.7E-81 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 Gene3D G3DSA:3.30.70.890 220 390 6.2E-54 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 Pfam PF00288 GHMP kinases N terminal domain 115 189 5.6E-11 T 19-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 Pfam PF08544 GHMP kinases C terminal 291 371 1.3E-12 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 338 355 9.4E-39 T 19-04-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 171 190 9.4E-39 T 19-04-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 25 49 9.4E-39 T 19-04-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PRINTS PR00959 Mevalonate kinase family signature 120 142 9.4E-39 T 19-04-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 PIRSF PIRSF000530 1 392 1.6E-107 T 19-04-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 SUPERFAMILY SSF54211 5 211 4.4E-51 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_2415 9a7d707d8cba4f329561d9a7a57e19df 394 Gene3D G3DSA:3.30.230.10 6 219 4.5E-61 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_8575 f36982ef74da18ad13682766ac094592 142 Pfam PF01047 MarR family 37 89 3.2E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8575 f36982ef74da18ad13682766ac094592 142 PANTHER PTHR39515 13 140 2.1E-19 T 19-04-2016 AMED_8575 f36982ef74da18ad13682766ac094592 142 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_8575 f36982ef74da18ad13682766ac094592 142 SMART SM00347 25 125 5.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8575 f36982ef74da18ad13682766ac094592 142 SUPERFAMILY SSF46785 12 138 9.94E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8575 f36982ef74da18ad13682766ac094592 142 Gene3D G3DSA:1.10.10.10 12 138 8.0E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3814 b645f85f4a48be237612a04f3f954602 339 PANTHER PTHR11695:SF294 25 317 1.6E-61 T 19-04-2016 AMED_3814 b645f85f4a48be237612a04f3f954602 339 SMART SM00829 20 314 1.1E-12 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3814 b645f85f4a48be237612a04f3f954602 339 Pfam PF13602 Zinc-binding dehydrogenase 200 314 1.8E-10 T 19-04-2016 AMED_3814 b645f85f4a48be237612a04f3f954602 339 Gene3D G3DSA:3.90.180.10 11 205 9.0E-49 T 19-04-2016 IPR011032 GroES-like AMED_3814 b645f85f4a48be237612a04f3f954602 339 PANTHER PTHR11695 25 317 1.6E-61 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3814 b645f85f4a48be237612a04f3f954602 339 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 158 179 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_3814 b645f85f4a48be237612a04f3f954602 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 37 100 1.6E-7 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3814 b645f85f4a48be237612a04f3f954602 339 SUPERFAMILY SSF50129 8 165 2.43E-29 T 19-04-2016 IPR011032 GroES-like AMED_3814 b645f85f4a48be237612a04f3f954602 339 SUPERFAMILY SSF51735 131 259 1.97E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 Gene3D G3DSA:3.40.50.720 148 232 3.1E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 SUPERFAMILY SSF51735 114 238 1.03E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 Gene3D G3DSA:3.90.180.10 1 147 3.7E-41 T 19-04-2016 IPR011032 GroES-like AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 SMART SM00829 10 306 1.3E-35 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 142 163 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 PANTHER PTHR11695 15 308 6.3E-99 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 Pfam PF13602 Zinc-binding dehydrogenase 184 306 5.6E-31 T 19-04-2016 AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 SUPERFAMILY SSF50129 1 141 8.07E-36 T 19-04-2016 IPR011032 GroES-like AMED_6135 14fdbefb9644efa00ad4dd8f3d9e52f1 308 PANTHER PTHR11695:SF294 15 308 6.3E-99 T 19-04-2016 AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 PIRSF PIRSF016838 1 317 4.3E-25 T 19-04-2016 IPR028349 Protein PafC AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 Pfam PF08279 HTH domain 7 62 4.5E-16 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 Gene3D G3DSA:1.10.10.10 1 65 1.0E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 SUPERFAMILY SSF46785 7 64 2.89E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 Pfam PF13280 WYL domain 142 313 2.1E-31 T 19-04-2016 IPR026881 WYL domain AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 PANTHER PTHR34580:SF3 7 306 6.4E-38 T 19-04-2016 AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 PANTHER PTHR34580 7 306 6.4E-38 T 19-04-2016 AMED_6045 8222ed2290b1016897e13b4fb564fc55 318 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 SMART SM00637 277 371 5.5E-34 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 Gene3D G3DSA:2.70.50.50 32 223 3.4E-51 T 19-04-2016 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 Gene3D G3DSA:2.60.40.290 276 369 7.9E-30 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 SUPERFAMILY SSF81296 32 224 2.8E-46 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 SUPERFAMILY SSF49384 272 369 6.49E-29 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 32 220 6.1E-42 T 19-04-2016 IPR004302 Chitin-binding protein, N-terminal AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 PANTHER PTHR34823:SF2 1 225 9.2E-48 T 19-04-2016 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 PANTHER PTHR34823 1 225 9.2E-48 T 19-04-2016 AMED_5188 6bf7a5ebf53373d911ff57eca7b6584e 374 Pfam PF00553 Cellulose binding domain 277 373 1.5E-25 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_1295 7aa561944fc06cd273506427263f8e15 610 SUPERFAMILY SSF51445 31 404 8.11E-115 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1295 7aa561944fc06cd273506427263f8e15 610 Gene3D G3DSA:3.40.50.1700 391 605 2.5E-61 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 288 305 - T 19-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 288 306 5.3E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 112 128 5.3E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 218 234 5.3E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 136 155 5.3E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PRINTS PR00133 Glycosyl hydrolase family 3 signature 182 198 5.3E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 Gene3D G3DSA:3.20.20.300 31 382 6.2E-119 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 SUPERFAMILY SSF52279 406 605 2.22E-50 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 52 367 2.7E-80 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PANTHER PTHR30620 1 66 7.6E-247 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_1295 7aa561944fc06cd273506427263f8e15 610 PANTHER PTHR30620 85 605 7.6E-247 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_1295 7aa561944fc06cd273506427263f8e15 610 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 406 605 1.9E-40 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_3770 201374a5cfacd35e60bea160b577845e 274 Pfam PF04672 S-adenosyl methyltransferase 1 274 3.6E-78 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_3770 201374a5cfacd35e60bea160b577845e 274 Gene3D G3DSA:3.40.50.150 1 274 1.3E-92 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3770 201374a5cfacd35e60bea160b577845e 274 PIRSF PIRSF017393 1 274 2.3E-76 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_3770 201374a5cfacd35e60bea160b577845e 274 SUPERFAMILY SSF53335 2 255 2.6E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PANTHER PTHR10992:SF107 7 151 6.7E-22 T 19-04-2016 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PANTHER PTHR10992:SF107 173 274 6.7E-22 T 19-04-2016 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PANTHER PTHR10992 7 151 6.7E-22 T 19-04-2016 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PANTHER PTHR10992 173 274 6.7E-22 T 19-04-2016 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 Pfam PF00561 alpha/beta hydrolase fold 30 260 2.3E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 218 232 1.2E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 1.2E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 1.2E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 1.2E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 SUPERFAMILY SSF53474 9 273 7.3E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3499 4e6d2d8325c6971c34dd7d2f623e135b 288 Gene3D G3DSA:3.40.50.1820 9 273 1.9E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 Gene3D G3DSA:3.40.50.300 258 292 3.6E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 Pfam PF00931 NB-ARC domain 256 493 2.7E-11 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 Gene3D G3DSA:1.25.40.10 639 792 8.2E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SUPERFAMILY SSF48452 787 979 3.35E-22 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SUPERFAMILY SSF55073 6 132 2.55E-6 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 PANTHER PTHR22845 232 567 2.4E-54 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SUPERFAMILY SSF52540 222 488 7.9E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 PANTHER PTHR22845:SF4 232 567 2.4E-54 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 PRINTS PR00364 Disease resistance protein signature 421 435 3.0E-9 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 PRINTS PR00364 Disease resistance protein signature 259 274 3.0E-9 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 PRINTS PR00364 Disease resistance protein signature 338 352 3.0E-9 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 Pfam PF13424 Tetratricopeptide repeat 829 898 1.1E-10 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 Pfam PF13424 Tetratricopeptide repeat 709 780 1.8E-7 T 19-04-2016 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 669 702 120.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 869 902 12.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 749 782 96.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 789 822 100.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 829 862 0.13 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 947 980 42.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SMART SM00028 709 742 100.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 Gene3D G3DSA:1.25.40.10 793 993 8.2E-20 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1281 71b786e3a0f080166ff3a9e61081ccd3 998 SUPERFAMILY SSF48452 640 784 1.14E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6125 1f22ed97c23e7c08450a6c7805b32579 148 PANTHER PTHR39624 8 144 6.4E-43 T 19-04-2016 AMED_6125 1f22ed97c23e7c08450a6c7805b32579 148 Gene3D G3DSA:3.30.300.20 6 144 2.7E-48 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_6125 1f22ed97c23e7c08450a6c7805b32579 148 Pfam PF02566 OsmC-like protein 40 143 8.8E-21 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_6125 1f22ed97c23e7c08450a6c7805b32579 148 PANTHER PTHR39624:SF2 8 144 6.4E-43 T 19-04-2016 AMED_6125 1f22ed97c23e7c08450a6c7805b32579 148 SUPERFAMILY SSF82784 8 144 8.24E-44 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Pfam PF01345 Domain of unknown function DUF11 444 486 4.1E-8 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Pfam PF01345 Domain of unknown function DUF11 535 585 1.4E-6 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Pfam PF01345 Domain of unknown function DUF11 1273 1327 3.9E-8 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Pfam PF01345 Domain of unknown function DUF11 631 689 3.4E-8 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Pfam PF01345 Domain of unknown function DUF11 1069 1128 1.0E-6 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Pfam PF01345 Domain of unknown function DUF11 981 1030 1.5E-7 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1098 1128 4.6E-6 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 551 585 9.1E-7 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 355 384 7.3E-5 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 451 485 1.9E-7 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 652 689 1.3E-6 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1399 1427 2.0E-5 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1297 1327 2.8E-7 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 994 1029 4.8E-7 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 756 785 3.9E-4 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9177 6882728be4e6eefd5f1b4b93916f0b2c 1488 Gene3D G3DSA:2.60.40.360 1189 1249 1.1E-4 T 19-04-2016 IPR008962 PapD-like AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 3.6E-25 T 19-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SUPERFAMILY SSF50249 65 127 1.67E-19 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Hamap MF_00141 Elongation factor P [efp]. 1 185 49.358 T 19-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 121 4.1E-23 T 19-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SMART SM01185 67 121 9.9E-29 T 19-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Gene3D G3DSA:2.40.50.140 65 127 1.8E-26 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 TIGRFAM TIGR00038 efp: translation elongation factor P 3 185 4.4E-77 T 19-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SUPERFAMILY SSF50104 2 63 4.45E-19 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SMART SM00841 129 184 1.8E-30 T 19-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 SUPERFAMILY SSF50249 129 185 6.34E-17 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Gene3D G3DSA:2.30.30.30 3 63 1.4E-29 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 PANTHER PTHR30053 4 186 4.8E-87 T 19-04-2016 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Gene3D G3DSA:2.40.50.140 129 185 1.6E-26 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 PIRSF PIRSF005901 1 186 5.7E-68 T 19-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 19-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 AMED_2741 af3674bd2cea59d79b5bd1ed9ee87ca4 187 Pfam PF09285 Elongation factor P, C-terminal 129 184 1.4E-23 T 19-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 SUPERFAMILY SSF53474 305 417 9.99E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 SUPERFAMILY SSF53474 111 272 9.99E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 PANTHER PTHR12277 115 392 4.0E-24 T 19-04-2016 AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 Gene3D G3DSA:3.40.50.1820 334 417 3.4E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 Gene3D G3DSA:3.40.50.1820 117 267 3.4E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 Pfam PF12146 Serine aminopeptidase, S33 173 361 1.5E-6 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_2720 13d34e90f837b744d6cc1db57bffc61a 421 PANTHER PTHR12277:SF62 115 392 4.0E-24 T 19-04-2016 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 SUPERFAMILY SSF48179 163 284 1.04E-23 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 PIRSF PIRSF000103 1 287 3.0E-77 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 PANTHER PTHR22981 6 283 9.1E-72 T 19-04-2016 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 160 3.4E-40 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 Gene3D G3DSA:1.10.1040.10 166 284 7.2E-26 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 SUPERFAMILY SSF51735 4 161 2.77E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 282 1.3E-16 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_6573 bfbb7feaaa650b1207935615e10e0259 287 Gene3D G3DSA:3.40.50.720 2 165 2.0E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2275 5c82b8736a5d27a19e7f650d142b77fb 158 Gene3D G3DSA:3.40.630.30 23 153 1.0E-14 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2275 5c82b8736a5d27a19e7f650d142b77fb 158 Pfam PF00583 Acetyltransferase (GNAT) family 74 152 1.1E-5 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2275 5c82b8736a5d27a19e7f650d142b77fb 158 SUPERFAMILY SSF55729 15 152 3.54E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PANTHER PTHR24322:SF356 159 195 2.0E-38 T 19-04-2016 AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PANTHER PTHR24322:SF356 10 143 2.0E-38 T 19-04-2016 AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 194 3.4E-4 T 19-04-2016 AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 SUPERFAMILY SSF51735 3 248 3.49E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 Pfam PF00106 short chain dehydrogenase 8 203 3.9E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 9.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 9.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 9.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 9.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 Gene3D G3DSA:3.40.50.720 2 249 1.8E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PANTHER PTHR24322 159 195 2.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7194 b64e98775655899c75c4b6a06dd5dc82 253 PANTHER PTHR24322 10 143 2.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0065 6d26a36101c844887e4aaf5991f57aaf 326 Gene3D G3DSA:3.40.1090.10 1 93 1.2E-6 T 19-04-2016 AMED_0065 6d26a36101c844887e4aaf5991f57aaf 326 Gene3D G3DSA:3.40.1090.10 94 180 9.7E-6 T 19-04-2016 AMED_0065 6d26a36101c844887e4aaf5991f57aaf 326 Pfam PF01734 Patatin-like phospholipase 2 184 2.1E-7 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMED_0065 6d26a36101c844887e4aaf5991f57aaf 326 SUPERFAMILY SSF52151 2 226 2.22E-21 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 Pfam PF00553 Cellulose binding domain 337 423 2.5E-18 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 Gene3D G3DSA:2.60.40.290 336 423 2.4E-22 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 Gene3D G3DSA:3.30.200.20 4 76 7.9E-19 T 19-04-2016 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 PANTHER PTHR24362:SF160 5 263 4.0E-68 T 19-04-2016 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 129 141 - T 19-04-2016 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 Pfam PF00069 Protein kinase domain 23 255 4.2E-41 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 SUPERFAMILY SSF49384 332 425 7.67E-22 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 SMART SM00637 337 432 8.8E-20 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 PANTHER PTHR24362 5 263 4.0E-68 T 19-04-2016 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 Gene3D G3DSA:1.10.510.10 77 263 3.6E-45 T 19-04-2016 AMED_5624 55ca0b321f28a9b4a19d28200c73253a 435 SUPERFAMILY SSF56112 22 263 1.07E-61 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 Gene3D G3DSA:3.40.50.720 3 246 8.5E-71 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PANTHER PTHR24322 12 140 9.0E-63 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PANTHER PTHR24322 156 188 9.0E-63 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 9.0E-56 T 19-04-2016 AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 SUPERFAMILY SSF51735 7 246 1.72E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 2.0E-4 T 19-04-2016 AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PANTHER PTHR24322:SF620 12 140 9.0E-63 T 19-04-2016 AMED_3006 774fa394f441fdfe2f14ef9f87e749ba 247 PANTHER PTHR24322:SF620 156 188 9.0E-63 T 19-04-2016 AMED_0273 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 PANTHER PTHR17630 79 209 3.7E-14 T 19-04-2016 AMED_0273 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 Pfam PF01738 Dienelactone hydrolase family 71 207 3.6E-16 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_0273 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 Gene3D G3DSA:3.40.50.1820 4 207 5.1E-29 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0273 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 PANTHER PTHR17630:SF42 79 209 3.7E-14 T 19-04-2016 AMED_0273 e49a35a8ae3272ee89e8ecda5fdaf3b6 209 SUPERFAMILY SSF53474 5 208 2.82E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6523 e5318591d76c0984fd98df590ce70a29 221 PANTHER PTHR35569 13 178 1.3E-32 T 19-04-2016 AMED_6523 e5318591d76c0984fd98df590ce70a29 221 Gene3D G3DSA:1.10.3210.10 36 132 2.0E-9 T 19-04-2016 IPR006674 HD domain AMED_6523 e5318591d76c0984fd98df590ce70a29 221 SUPERFAMILY SSF109604 33 148 1.18E-16 T 19-04-2016 AMED_6523 e5318591d76c0984fd98df590ce70a29 221 Pfam PF01966 HD domain 37 134 5.4E-8 T 19-04-2016 IPR006674 HD domain AMED_6523 e5318591d76c0984fd98df590ce70a29 221 PANTHER PTHR35569:SF1 13 178 1.3E-32 T 19-04-2016 AMED_1744 337900db18b8e13ae44d5b003bdee20b 77 Gene3D G3DSA:3.30.70.920 4 75 6.3E-17 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_1744 337900db18b8e13ae44d5b003bdee20b 77 SUPERFAMILY SSF54909 2 75 3.22E-14 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_1744 337900db18b8e13ae44d5b003bdee20b 77 PANTHER PTHR30154:SF29 1 75 9.5E-13 T 19-04-2016 AMED_1744 337900db18b8e13ae44d5b003bdee20b 77 PANTHER PTHR30154 1 75 9.5E-13 T 19-04-2016 AMED_1744 337900db18b8e13ae44d5b003bdee20b 77 Pfam PF01037 Lrp/AsnC ligand binding domain 6 74 2.2E-12 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 PRINTS PR00740 Glycosyl hydrolase family 27 signature 157 175 2.3E-5 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 PRINTS PR00740 Glycosyl hydrolase family 27 signature 17 32 2.3E-5 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 PRINTS PR00740 Glycosyl hydrolase family 27 signature 258 279 2.3E-5 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 Pfam PF16499 Alpha galactosidase A 16 80 1.4E-11 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 Pfam PF16499 Alpha galactosidase A 124 332 4.9E-13 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 SUPERFAMILY SSF51011 310 383 3.78E-8 T 19-04-2016 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 SUPERFAMILY SSF51445 117 301 9.67E-41 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 SUPERFAMILY SSF51445 8 81 9.67E-41 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 Gene3D G3DSA:2.60.40.1180 296 383 4.2E-15 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 Gene3D G3DSA:3.20.20.70 8 295 8.6E-66 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 PANTHER PTHR11452 18 91 3.6E-58 T 19-04-2016 AMED_1856 00bfe6106851799a4ce95ed06ccf21eb 384 PANTHER PTHR11452 125 383 3.6E-58 T 19-04-2016 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 SUPERFAMILY SSF53474 157 211 9.13E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 SUPERFAMILY SSF53474 351 489 9.13E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 SUPERFAMILY SSF53474 65 113 9.13E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 Pfam PF00561 alpha/beta hydrolase fold 68 213 1.6E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 PANTHER PTHR10992:SF863 157 238 2.2E-39 T 19-04-2016 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 PANTHER PTHR10992:SF863 32 111 2.2E-39 T 19-04-2016 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 PANTHER PTHR10992 377 494 2.2E-39 T 19-04-2016 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 PANTHER PTHR10992 157 238 2.2E-39 T 19-04-2016 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 PANTHER PTHR10992:SF863 377 494 2.2E-39 T 19-04-2016 AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 Gene3D G3DSA:3.40.50.1820 32 112 4.4E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 Gene3D G3DSA:3.40.50.1820 371 493 4.4E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 Gene3D G3DSA:3.40.50.1820 155 292 4.4E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 Pfam PF08386 TAP-like protein 402 505 3.5E-20 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_5682 b7aadd127047c3a9719aaf13c3871cf7 519 PANTHER PTHR10992 32 111 2.2E-39 T 19-04-2016 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 PANTHER PTHR30177 34 318 4.3E-76 T 19-04-2016 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 46 312 1.4E-57 T 19-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 Gene3D G3DSA:3.40.190.120 154 255 1.4E-30 T 19-04-2016 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 PANTHER PTHR30177:SF9 34 318 4.3E-76 T 19-04-2016 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 SUPERFAMILY SSF53850 46 318 1.9E-61 T 19-04-2016 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 Gene3D G3DSA:3.40.190.10 268 319 1.5E-49 T 19-04-2016 AMED_0099 8c061d217b1109c26e6c1ccc9702b499 319 Gene3D G3DSA:3.40.190.10 46 153 1.5E-49 T 19-04-2016 AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 SUPERFAMILY SSF81342 18 277 1.57E-58 T 19-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 Pfam PF13631 Cytochrome b(N-terminal)/b6/petB 119 276 2.2E-57 T 19-04-2016 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 Gene3D G3DSA:1.20.810.10 18 281 6.1E-62 T 19-04-2016 IPR027387 Cytochrome b/b6-like domain AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 PANTHER PTHR19271 13 73 2.3E-111 T 19-04-2016 AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 PANTHER PTHR19271 91 280 2.3E-111 T 19-04-2016 AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 PANTHER PTHR19271:SF7 13 73 2.3E-111 T 19-04-2016 AMED_5718 99aef77e7f969c3dc4ac84c56adf2dfc 384 PANTHER PTHR19271:SF7 91 280 2.3E-111 T 19-04-2016 AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Pfam PF00271 Helicase conserved C-terminal domain 284 363 2.3E-6 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Gene3D G3DSA:3.40.50.300 21 193 8.4E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SMART SM00487 27 210 1.2E-14 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Pfam PF12029 Domain of unknown function (DUF3516) 374 831 3.2E-215 T 19-04-2016 IPR021904 Protein of unknown function DUF3516 AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SUPERFAMILY SSF52540 44 250 3.78E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SUPERFAMILY SSF52540 283 375 3.78E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Pfam PF00270 DEAD/DEAH box helicase 33 178 3.4E-8 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 PANTHER PTHR12131 308 370 1.7E-12 T 19-04-2016 AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 PANTHER PTHR12131:SF4 308 370 1.7E-12 T 19-04-2016 AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 SMART SM00490 277 363 9.1E-14 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_0865 7e3f92eb949ac6ec22ee92d09cd8f23d 834 Gene3D G3DSA:3.40.50.300 260 389 9.2E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 SMART SM00020 26 261 8.4E-23 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 PANTHER PTHR24256:SF125 27 269 1.4E-29 T 19-04-2016 AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 Gene3D G3DSA:2.40.10.10 66 136 2.5E-12 T 19-04-2016 AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 Pfam PF00089 Trypsin 27 261 4.9E-30 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 Gene3D G3DSA:2.40.10.10 27 65 6.7E-10 T 19-04-2016 AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 Gene3D G3DSA:2.40.10.10 137 266 2.2E-19 T 19-04-2016 AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 SUPERFAMILY SSF50494 21 267 9.79E-42 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_2129 b6844288cbb0ece205640cfcfe74af60 269 PANTHER PTHR24256 27 269 1.4E-29 T 19-04-2016 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 343 354 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 267 278 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 88 99 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 334 343 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 285 312 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 152 167 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 313 328 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00359 B-class P450 signature 135 151 2.7E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 336 345 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PANTHER PTHR11712 7 395 3.8E-81 T 19-04-2016 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 Gene3D G3DSA:1.10.630.10 7 394 9.5E-116 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 343 354 2.3E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 267 278 2.3E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 334 343 2.3E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 PRINTS PR00385 P450 superfamily signature 232 249 2.3E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 SUPERFAMILY SSF48264 8 394 5.11E-85 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3577 1fd7f8ca6d3c1a22e09a645088b85491 395 Pfam PF00067 Cytochrome P450 267 363 1.4E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4822 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 PANTHER PTHR10992 163 259 1.8E-22 T 19-04-2016 AMED_4822 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 PANTHER PTHR10992 34 145 1.8E-22 T 19-04-2016 AMED_4822 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 Gene3D G3DSA:3.40.50.1820 32 259 1.5E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4822 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 Pfam PF12697 Alpha/beta hydrolase family 36 253 2.3E-14 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4822 c7c5c6c393a4c6c6024ebf24a6e8e4b5 262 SUPERFAMILY SSF53474 13 259 1.71E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3455 9ae12e6a589f0cdbb4e55b10772d2f66 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 62 4.6E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3455 9ae12e6a589f0cdbb4e55b10772d2f66 213 PANTHER PTHR30055 1 172 6.6E-24 T 19-04-2016 AMED_3455 9ae12e6a589f0cdbb4e55b10772d2f66 213 PANTHER PTHR30055:SF73 1 172 6.6E-24 T 19-04-2016 AMED_3455 9ae12e6a589f0cdbb4e55b10772d2f66 213 SUPERFAMILY SSF46689 5 82 4.46E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3455 9ae12e6a589f0cdbb4e55b10772d2f66 213 Gene3D G3DSA:1.10.357.10 6 91 1.4E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3455 9ae12e6a589f0cdbb4e55b10772d2f66 213 Gene3D G3DSA:1.10.357.10 126 207 1.4E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3434 0c5409158b24224f31f9094677cd536a 145 SMART SM00347 32 132 1.4E-18 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3434 0c5409158b24224f31f9094677cd536a 145 PANTHER PTHR33164 6 144 1.7E-45 T 19-04-2016 AMED_3434 0c5409158b24224f31f9094677cd536a 145 Pfam PF01047 MarR family 39 96 7.1E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3434 0c5409158b24224f31f9094677cd536a 145 PANTHER PTHR33164:SF5 6 144 1.7E-45 T 19-04-2016 AMED_3434 0c5409158b24224f31f9094677cd536a 145 Gene3D G3DSA:1.10.10.10 6 142 4.1E-41 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3434 0c5409158b24224f31f9094677cd536a 145 SUPERFAMILY SSF46785 7 143 5.09E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1763 715282ea6f388d0489a80cd03a27967d 124 Gene3D G3DSA:1.10.10.10 5 77 2.4E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1763 715282ea6f388d0489a80cd03a27967d 124 SMART SM00345 17 76 4.1E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1763 715282ea6f388d0489a80cd03a27967d 124 SUPERFAMILY SSF46785 6 94 2.06E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1763 715282ea6f388d0489a80cd03a27967d 124 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 2.8E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SUPERFAMILY SSF52540 221 493 1.01E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 Gene3D G3DSA:3.40.50.300 253 348 1.7E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 PANTHER PTHR22845:SF4 219 577 2.4E-75 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 Gene3D G3DSA:1.25.40.10 659 874 1.1E-36 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 Pfam PF13181 Tetratricopeptide repeat 839 870 0.0098 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SUPERFAMILY SSF48452 673 871 4.55E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 Pfam PF13424 Tetratricopeptide repeat 680 750 7.5E-15 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 Pfam PF13424 Tetratricopeptide repeat 760 830 4.6E-12 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 PANTHER PTHR22845 219 577 2.4E-75 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 PRINTS PR00364 Disease resistance protein signature 257 272 1.7E-6 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 PRINTS PR00364 Disease resistance protein signature 423 437 1.7E-6 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 PRINTS PR00364 Disease resistance protein signature 335 349 1.7E-6 T 19-04-2016 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 Pfam PF00931 NB-ARC domain 254 495 7.1E-13 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SMART SM00028 679 712 7.1E-5 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SMART SM00028 719 752 98.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SMART SM00028 839 872 0.0044 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SMART SM00028 799 832 0.0085 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1454 48277b1e78dc26b93eed8ebfd5d145a6 896 SMART SM00028 759 792 0.022 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 PANTHER PTHR35807 1 334 2.0E-48 T 19-04-2016 AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 Gene3D G3DSA:1.25.40.10 104 220 1.9E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 SUPERFAMILY SSF46894 2 91 1.59E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 Gene3D G3DSA:1.10.10.10 279 328 5.6E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 Pfam PF03704 Bacterial transcriptional activator domain 98 241 8.9E-37 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 SUPERFAMILY SSF48295 270 332 9.94E-8 T 19-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 SUPERFAMILY SSF48452 93 257 2.21E-32 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 Gene3D G3DSA:1.10.10.10 14 94 4.7E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4805 fe99dd0046bd312da504ba18b0e0dae5 372 SMART SM01043 98 242 2.1E-42 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6808 f4e6af6f5c8a273c155835ca549ff163 206 Gene3D G3DSA:1.10.10.60 11 68 2.5E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6808 f4e6af6f5c8a273c155835ca549ff163 206 SUPERFAMILY SSF46689 11 90 4.74E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6808 f4e6af6f5c8a273c155835ca549ff163 206 PANTHER PTHR30055:SF81 5 172 3.6E-27 T 19-04-2016 AMED_6808 f4e6af6f5c8a273c155835ca549ff163 206 PANTHER PTHR30055 5 172 3.6E-27 T 19-04-2016 AMED_6808 f4e6af6f5c8a273c155835ca549ff163 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 63 8.8E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6808 f4e6af6f5c8a273c155835ca549ff163 206 Gene3D G3DSA:1.10.357.10 69 199 1.4E-18 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 20 258 1.0E-39 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PANTHER PTHR11482 13 396 2.6E-82 T 19-04-2016 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 SUPERFAMILY SSF55729 374 528 3.54E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PANTHER PTHR11482:SF6 13 396 2.6E-82 T 19-04-2016 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 Gene3D G3DSA:3.40.630.30 376 525 7.5E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 38 56 9.0E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 158 171 9.0E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 70 9.0E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 248 267 9.0E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 110 132 3.6E-12 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 312 322 3.6E-12 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 36 63 3.6E-12 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 PRINTS PR01182 Ornithine decarboxylase signature 80 104 3.6E-12 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 Gene3D G3DSA:2.40.37.10 245 375 5.7E-19 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 Pfam PF00583 Acetyltransferase (GNAT) family 421 507 2.9E-8 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 Gene3D G3DSA:3.20.20.10 20 244 2.0E-47 T 19-04-2016 IPR029066 PLP-binding barrel AMED_5536 81eca499f9478cce88733b41864d6aa7 536 SUPERFAMILY SSF50621 242 377 2.72E-21 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 295 363 3.4E-7 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 38 56 - T 19-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 AMED_5536 81eca499f9478cce88733b41864d6aa7 536 SUPERFAMILY SSF51419 16 260 8.18E-51 T 19-04-2016 IPR029066 PLP-binding barrel AMED_7633 7e2ebfd13e26c151c74df957db408222 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 4.4E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7633 7e2ebfd13e26c151c74df957db408222 202 Gene3D G3DSA:1.10.357.10 10 190 3.4E-37 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7633 7e2ebfd13e26c151c74df957db408222 202 SUPERFAMILY SSF46689 7 73 1.44E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7633 7e2ebfd13e26c151c74df957db408222 202 Pfam PF13977 Bacterial transcriptional repressor 87 196 8.5E-15 T 19-04-2016 AMED_7633 7e2ebfd13e26c151c74df957db408222 202 SUPERFAMILY SSF48498 81 192 9.15E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7633 7e2ebfd13e26c151c74df957db408222 202 PANTHER PTHR30055 3 197 1.0E-26 T 19-04-2016 AMED_7633 7e2ebfd13e26c151c74df957db408222 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 3.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7633 7e2ebfd13e26c151c74df957db408222 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 3.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5074 59fe41a082f1f09cf756aa32abacc0c0 293 PANTHER PTHR30151 41 291 3.4E-83 T 19-04-2016 AMED_5074 59fe41a082f1f09cf756aa32abacc0c0 293 Gene3D G3DSA:1.10.3720.10 73 269 7.6E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5074 59fe41a082f1f09cf756aa32abacc0c0 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 269 9.8E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5074 59fe41a082f1f09cf756aa32abacc0c0 293 PANTHER PTHR30151:SF17 41 291 3.4E-83 T 19-04-2016 AMED_5074 59fe41a082f1f09cf756aa32abacc0c0 293 SUPERFAMILY SSF161098 84 266 1.01E-32 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8300 2f4d758fa6796d42d01139e1a9183186 143 Gene3D G3DSA:1.10.10.60 77 113 4.5E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8300 2f4d758fa6796d42d01139e1a9183186 143 SUPERFAMILY SSF46689 37 121 7.89E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4569 7ebb47808c950333b549aede109f521b 294 Pfam PF00549 CoA-ligase 158 274 6.9E-15 T 19-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4569 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 181 199 2.7E-33 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 2.7E-33 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 86 103 2.7E-33 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 PRINTS PR01798 Succinyl-CoA synthase signature 212 225 2.7E-33 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 PANTHER PTHR11117 2 294 2.2E-136 T 19-04-2016 AMED_4569 7ebb47808c950333b549aede109f521b 294 Pfam PF02629 CoA binding domain 6 103 2.3E-23 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_4569 7ebb47808c950333b549aede109f521b 294 SUPERFAMILY SSF51735 3 128 2.78E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4569 7ebb47808c950333b549aede109f521b 294 Gene3D G3DSA:3.40.50.720 3 125 2.9E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4569 7ebb47808c950333b549aede109f521b 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 19-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMED_4569 7ebb47808c950333b549aede109f521b 294 SUPERFAMILY SSF52210 129 290 7.72E-47 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4569 7ebb47808c950333b549aede109f521b 294 PIRSF PIRSF001553 1 294 1.4E-112 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 292 7.0E-124 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 Gene3D G3DSA:3.40.50.261 126 291 2.4E-65 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4569 7ebb47808c950333b549aede109f521b 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 185 - T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_4569 7ebb47808c950333b549aede109f521b 294 SMART SM00881 4 104 2.9E-25 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SMART SM00642 158 568 2.2E-9 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF51445 500 576 1.7E-136 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF51445 137 471 1.7E-136 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Gene3D G3DSA:3.20.20.80 152 576 5.7E-125 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 701 0.0 T 19-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 PANTHER PTHR10357:SF74 600 702 0.0 T 19-04-2016 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Gene3D G3DSA:2.60.40.10 5 151 1.7E-55 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 PANTHER PTHR10357:SF74 4 579 0.0 T 19-04-2016 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Pfam PF00128 Alpha amylase, catalytic domain 189 292 7.1E-9 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Pfam PF00128 Alpha amylase, catalytic domain 308 531 4.8E-8 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Gene3D G3DSA:2.60.40.1180 590 702 1.2E-33 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 PANTHER PTHR10357 4 579 0.0 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 PANTHER PTHR10357 600 702 0.0 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 96 4.1E-16 T 19-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF51011 591 701 1.63E-25 T 19-04-2016 AMED_2592 60a39ca02e3bf56d1291ae09c3a0dcfd 708 SUPERFAMILY SSF81296 5 147 1.06E-42 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 Gene3D G3DSA:3.40.50.720 3 156 1.3E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 PANTHER PTHR22981:SF7 3 240 6.6E-31 T 19-04-2016 AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 152 1.3E-23 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 PIRSF PIRSF000103 1 261 3.2E-41 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 Gene3D G3DSA:1.10.1040.10 158 248 2.0E-6 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 SUPERFAMILY SSF48179 157 248 8.73E-9 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 SUPERFAMILY SSF51735 3 153 2.03E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7176 97e88ed727bbb5d8a5690f84724e8387 270 PANTHER PTHR22981 3 240 6.6E-31 T 19-04-2016 AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 PANTHER PTHR30136 1 237 3.3E-60 T 19-04-2016 AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 SUPERFAMILY SSF46785 1 63 1.47E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 Pfam PF09339 IclR helix-turn-helix domain 1 43 5.6E-8 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 SUPERFAMILY SSF55781 57 236 7.85E-46 T 19-04-2016 IPR029016 GAF domain-like AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 Gene3D G3DSA:1.10.10.10 1 61 8.8E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 Gene3D G3DSA:3.30.450.40 62 238 2.0E-49 T 19-04-2016 IPR029016 GAF domain-like AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 SMART SM00346 1 81 1.1E-9 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_8641 a798adff433caf1da7ecd29a47069dd3 242 Pfam PF01614 Bacterial transcriptional regulator 110 231 4.7E-29 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 SMART SM00829 14 317 1.5E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 Pfam PF13602 Zinc-binding dehydrogenase 203 315 1.1E-10 T 19-04-2016 AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 Gene3D G3DSA:3.90.180.10 6 156 6.8E-36 T 19-04-2016 IPR011032 GroES-like AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 SUPERFAMILY SSF51735 124 310 1.09E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 PANTHER PTHR11695:SF294 19 319 7.7E-59 T 19-04-2016 AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 Gene3D G3DSA:3.40.50.720 157 248 1.0E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 93 2.1E-10 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 SUPERFAMILY SSF50129 5 128 3.2E-29 T 19-04-2016 IPR011032 GroES-like AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 SUPERFAMILY SSF50129 290 317 3.2E-29 T 19-04-2016 IPR011032 GroES-like AMED_7149 84d5d0b6624b2431d9c196f9bd11a05a 320 PANTHER PTHR11695 19 319 7.7E-59 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1536 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 PANTHER PTHR24421 18 508 3.3E-56 T 19-04-2016 AMED_1536 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 Pfam PF07730 Histidine kinase 321 388 2.0E-12 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_1536 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 SUPERFAMILY SSF55874 393 509 5.12E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1536 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 PANTHER PTHR24421:SF19 18 508 3.3E-56 T 19-04-2016 AMED_1536 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 SMART SM00387 422 511 5.5E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1536 2e7695cbf0c9ed8ebc6b4d1ceddffb53 511 Gene3D G3DSA:3.30.565.10 407 509 1.1E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 PANTHER PTHR31126:SF21 89 191 6.5E-37 T 19-04-2016 AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 PANTHER PTHR31126:SF21 214 327 6.5E-37 T 19-04-2016 AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 SUPERFAMILY SSF52799 111 324 5.3E-42 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 PANTHER PTHR31126 214 327 6.5E-37 T 19-04-2016 AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 Pfam PF13350 Tyrosine phosphatase family 112 282 3.0E-42 T 19-04-2016 IPR026893 Tyrosine/serine-protein phosphatase IphP-type AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 Pfam PF13350 Tyrosine phosphatase family 285 325 8.4E-5 T 19-04-2016 IPR026893 Tyrosine/serine-protein phosphatase IphP-type AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 PANTHER PTHR31126 89 191 6.5E-37 T 19-04-2016 AMED_5443 8da94b6f1eddf96454f3288a27e95266 328 Gene3D G3DSA:3.90.190.10 114 285 7.1E-17 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 67 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 4.3E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 PANTHER PTHR30055 7 244 2.2E-27 T 19-04-2016 AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 SUPERFAMILY SSF46689 14 90 3.33E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 9.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 9.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 Gene3D G3DSA:1.10.357.10 6 207 1.7E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3373 c271913a03c1809e1764ac93f8a622f9 245 SUPERFAMILY SSF48498 96 206 2.89E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4149 26cb142ed74b56541f625ab2d832f49d 334 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 14 259 2.7E-65 T 19-04-2016 IPR014145 DNA ligase D, polymerase domain AMED_4149 26cb142ed74b56541f625ab2d832f49d 334 PANTHER PTHR10459 47 333 4.5E-84 T 19-04-2016 AMED_4149 26cb142ed74b56541f625ab2d832f49d 334 PANTHER PTHR10459:SF36 47 333 4.5E-84 T 19-04-2016 AMED_6615 e6d1814262d256b94669ee129bf284cc 292 Pfam PF11967 Recombination protein O N terminal 4 80 1.3E-27 T 19-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMED_6615 e6d1814262d256b94669ee129bf284cc 292 Hamap MF_00201 DNA repair protein RecO [recO]. 3 244 27.16 T 19-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMED_6615 e6d1814262d256b94669ee129bf284cc 292 SUPERFAMILY SSF50249 3 80 1.27E-21 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6615 e6d1814262d256b94669ee129bf284cc 292 PANTHER PTHR33991 3 254 1.5E-53 T 19-04-2016 AMED_6615 e6d1814262d256b94669ee129bf284cc 292 TIGRFAM TIGR00613 reco: DNA repair protein RecO 6 201 4.2E-41 T 19-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMED_6615 e6d1814262d256b94669ee129bf284cc 292 Gene3D G3DSA:2.40.50.140 3 81 5.8E-39 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6615 e6d1814262d256b94669ee129bf284cc 292 SUPERFAMILY SSF57863 84 233 1.78E-38 T 19-04-2016 AMED_6615 e6d1814262d256b94669ee129bf284cc 292 Pfam PF02565 Recombination protein O C terminal 87 239 4.5E-32 T 19-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 23 349 44.352 T 19-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 SUPERFAMILY SSF46589 29 113 4.24E-15 T 19-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 SUPERFAMILY SSF55681 107 346 6.3E-77 T 19-04-2016 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 58 345 1.7E-88 T 19-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 Gene3D G3DSA:3.30.930.10 24 349 6.1E-117 T 19-04-2016 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 36 102 2.6E-17 T 19-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 Pfam PF01409 tRNA synthetases class II core domain (F) 107 346 1.8E-98 T 19-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMED_6051 83283b4bafe63b851b0e35037e8423bf 353 PANTHER PTHR11538 107 349 5.3E-98 T 19-04-2016 AMED_5032 02a052c91cc963c42fe428dc54f2901a 341 Gene3D G3DSA:3.40.50.1980 191 328 2.2E-14 T 19-04-2016 AMED_5032 02a052c91cc963c42fe428dc54f2901a 341 Pfam PF01497 Periplasmic binding protein 102 310 1.8E-16 T 19-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AMED_5032 02a052c91cc963c42fe428dc54f2901a 341 SUPERFAMILY SSF53807 47 312 4.32E-31 T 19-04-2016 AMED_5032 02a052c91cc963c42fe428dc54f2901a 341 PANTHER PTHR30532 9 306 6.3E-19 T 19-04-2016 AMED_5032 02a052c91cc963c42fe428dc54f2901a 341 Gene3D G3DSA:3.40.50.1980 46 184 7.6E-11 T 19-04-2016 AMED_7470 e0e89289b78fafe52c765d8feafd4736 319 Pfam PF01022 Bacterial regulatory protein, arsR family 252 297 1.3E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7470 e0e89289b78fafe52c765d8feafd4736 319 SUPERFAMILY SSF46785 246 316 4.93E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7470 e0e89289b78fafe52c765d8feafd4736 319 Gene3D G3DSA:1.10.10.10 246 313 4.1E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7470 e0e89289b78fafe52c765d8feafd4736 319 SMART SM00418 244 317 2.5E-4 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 SUPERFAMILY SSF88946 2 70 2.94E-19 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 Pfam PF08281 Sigma-70, region 4 89 140 2.2E-17 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 Gene3D G3DSA:1.10.1740.10 2 76 2.9E-21 T 19-04-2016 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 PANTHER PTHR30173:SF24 1 159 1.6E-47 T 19-04-2016 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 SUPERFAMILY SSF88659 81 145 1.72E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 Gene3D G3DSA:1.10.10.10 82 146 1.0E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 Pfam PF04542 Sigma-70 region 2 2 59 9.2E-15 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 143 9.0E-29 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9351 6eb37a5f989af9c49ace790c34babf92 174 PANTHER PTHR30173 1 159 1.6E-47 T 19-04-2016 AMED_7046 4837cd3866e7c098834cd7f0f035eb75 213 SUPERFAMILY SSF52540 42 212 1.19E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7046 4837cd3866e7c098834cd7f0f035eb75 213 PANTHER PTHR34848 30 213 8.7E-61 T 19-04-2016 AMED_7046 4837cd3866e7c098834cd7f0f035eb75 213 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 42 213 1.6E-53 T 19-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 AMED_7046 4837cd3866e7c098834cd7f0f035eb75 213 Gene3D G3DSA:3.40.50.300 42 212 1.2E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7046 4837cd3866e7c098834cd7f0f035eb75 213 PIRSF PIRSF006135 40 213 2.1E-49 T 19-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 AMED_3143 0aa96c12337f8a4791decd746af6558f 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3143 0aa96c12337f8a4791decd746af6558f 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 6.8E-61 T 19-04-2016 AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PANTHER PTHR24322:SF328 11 185 1.2E-55 T 19-04-2016 AMED_3143 0aa96c12337f8a4791decd746af6558f 253 Gene3D G3DSA:3.40.50.720 6 250 3.4E-82 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.4E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.4E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.4E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 6.4E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.4E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.4E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 SUPERFAMILY SSF51735 7 250 2.69E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PANTHER PTHR24322 11 185 1.2E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3143 0aa96c12337f8a4791decd746af6558f 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 1.1E-4 T 19-04-2016 AMED_3147 e3aa002bc124f27110166337c8144183 669 PANTHER PTHR32243 445 669 1.4E-86 T 19-04-2016 AMED_3147 e3aa002bc124f27110166337c8144183 669 PANTHER PTHR32243 26 73 1.4E-86 T 19-04-2016 AMED_3147 e3aa002bc124f27110166337c8144183 669 SUPERFAMILY SSF161098 75 314 3.14E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3147 e3aa002bc124f27110166337c8144183 669 Gene3D G3DSA:1.10.3720.10 404 656 2.1E-65 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3147 e3aa002bc124f27110166337c8144183 669 Gene3D G3DSA:1.10.3720.10 28 315 1.4E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3147 e3aa002bc124f27110166337c8144183 669 SUPERFAMILY SSF161098 403 669 4.58E-71 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3147 e3aa002bc124f27110166337c8144183 669 PANTHER PTHR32243:SF18 26 73 1.4E-86 T 19-04-2016 AMED_3147 e3aa002bc124f27110166337c8144183 669 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 483 653 1.3E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3147 e3aa002bc124f27110166337c8144183 669 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 317 1.8E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3147 e3aa002bc124f27110166337c8144183 669 PANTHER PTHR32243:SF18 445 669 1.4E-86 T 19-04-2016 AMED_7882 34b303c13b8603f9dc9e5c3e3cfbe4e0 158 SMART SM00960 43 129 2.0E-11 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_7882 34b303c13b8603f9dc9e5c3e3cfbe4e0 158 SUPERFAMILY SSF103196 43 155 3.14E-16 T 19-04-2016 AMED_7882 34b303c13b8603f9dc9e5c3e3cfbe4e0 158 Pfam PF03259 Roadblock/LC7 domain 52 129 2.6E-9 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_7882 34b303c13b8603f9dc9e5c3e3cfbe4e0 158 Gene3D G3DSA:3.30.450.30 40 155 3.6E-18 T 19-04-2016 AMED_0035 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 4.6E-24 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 97 112 4.6E-24 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 4.6E-24 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 4.6E-24 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 4.6E-24 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 166 5.3E-44 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 PIRSF PIRSF001467 1 170 7.2E-55 T 19-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 52 69 - T 19-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 Gene3D G3DSA:2.40.100.10 2 167 1.1E-60 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_0035 3146f303865808c204cabf11419ad0d0 171 PANTHER PTHR11071 3 167 4.7E-68 T 19-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 AMED_0035 3146f303865808c204cabf11419ad0d0 171 SUPERFAMILY SSF50891 3 167 1.15E-60 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_8285 0e45300b5426bb38de2ca015f08b2dda 143 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 17 119 4.8E-10 T 19-04-2016 IPR003709 Peptidase M15B GO:0006508|GO:0008233 AMED_8285 0e45300b5426bb38de2ca015f08b2dda 143 SUPERFAMILY SSF55166 14 123 8.63E-23 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_8285 0e45300b5426bb38de2ca015f08b2dda 143 Gene3D G3DSA:3.30.1380.10 14 89 5.6E-6 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 SUPERFAMILY SSF53850 53 218 2.54E-69 T 19-04-2016 AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 SUPERFAMILY SSF53850 246 571 2.54E-69 T 19-04-2016 AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 108 506 1.4E-51 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 Gene3D G3DSA:3.40.190.10 175 350 7.8E-23 T 19-04-2016 AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 PANTHER PTHR30290 3 35 1.8E-57 T 19-04-2016 AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 PANTHER PTHR30290 252 570 1.8E-57 T 19-04-2016 AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 PANTHER PTHR30290 56 233 1.8E-57 T 19-04-2016 AMED_8028 6a5782a05107fa9eb533b94bd707ac1e 594 Gene3D G3DSA:3.10.105.10 351 563 1.4E-34 T 19-04-2016 AMED_9062 c1b1371045247c63de04067b32b37e76 247 SMART SM00382 35 220 6.6E-19 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9062 c1b1371045247c63de04067b32b37e76 247 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9062 c1b1371045247c63de04067b32b37e76 247 PANTHER PTHR24220:SF327 12 247 5.6E-125 T 19-04-2016 AMED_9062 c1b1371045247c63de04067b32b37e76 247 PANTHER PTHR24220 12 247 5.6E-125 T 19-04-2016 AMED_9062 c1b1371045247c63de04067b32b37e76 247 SUPERFAMILY SSF52540 11 242 2.28E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9062 c1b1371045247c63de04067b32b37e76 247 Pfam PF00005 ABC transporter 26 172 3.3E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9062 c1b1371045247c63de04067b32b37e76 247 Gene3D G3DSA:3.40.50.300 11 244 4.1E-82 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9062 c1b1371045247c63de04067b32b37e76 247 PIRSF PIRSF039085 7 247 1.5E-99 T 19-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMED_1103 6e15e9391b46823eb709f87f0afc39d0 209 PANTHER PTHR33508 6 207 2.3E-52 T 19-04-2016 AMED_1103 6e15e9391b46823eb709f87f0afc39d0 209 Pfam PF01914 MarC family integral membrane protein 10 204 1.2E-47 T 19-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMED_1103 6e15e9391b46823eb709f87f0afc39d0 209 PANTHER PTHR33508:SF1 6 207 2.3E-52 T 19-04-2016 AMED_1103 6e15e9391b46823eb709f87f0afc39d0 209 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 10 199 8.7E-44 T 19-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMED_0054 fb4e98469ccc17967e539c5db50c5671 495 PANTHER PTHR30474:SF3 67 475 1.9E-167 T 19-04-2016 AMED_0054 fb4e98469ccc17967e539c5db50c5671 495 PANTHER PTHR30474 67 475 1.9E-167 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMED_0054 fb4e98469ccc17967e539c5db50c5671 495 Pfam PF01098 Cell cycle protein 91 460 5.1E-85 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMED_1243 d70228707de05204192dec5435e52123 479 SUPERFAMILY SSF55486 78 436 1.25E-112 T 19-04-2016 AMED_1243 d70228707de05204192dec5435e52123 479 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 79 436 1.1E-117 T 19-04-2016 IPR018766 Zinicin-like metallopeptidase type 2 AMED_1243 d70228707de05204192dec5435e52123 479 PANTHER PTHR39420 53 469 3.5E-183 T 19-04-2016 AMED_1243 d70228707de05204192dec5435e52123 479 Pfam PF10103 Zinicin-like metallopeptidase 79 432 4.9E-117 T 19-04-2016 IPR018766 Zinicin-like metallopeptidase type 2 AMED_1243 d70228707de05204192dec5435e52123 479 PANTHER PTHR39420:SF2 53 469 3.5E-183 T 19-04-2016 AMED_5008 18577242013033ea8d925da0219da0be 147 PANTHER PTHR33164:SF2 15 146 1.7E-21 T 19-04-2016 AMED_5008 18577242013033ea8d925da0219da0be 147 Gene3D G3DSA:1.10.10.10 37 99 2.0E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5008 18577242013033ea8d925da0219da0be 147 Gene3D G3DSA:1.10.287.100 101 145 6.8E-8 T 19-04-2016 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 AMED_5008 18577242013033ea8d925da0219da0be 147 ProSitePatterns PS01117 MarR-type HTH domain signature. 67 102 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_5008 18577242013033ea8d925da0219da0be 147 SMART SM00347 29 130 1.4E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5008 18577242013033ea8d925da0219da0be 147 Pfam PF01047 MarR family 37 94 3.3E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5008 18577242013033ea8d925da0219da0be 147 PANTHER PTHR33164 15 146 1.7E-21 T 19-04-2016 AMED_5008 18577242013033ea8d925da0219da0be 147 SUPERFAMILY SSF46785 12 146 1.3E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2448 8de1f2de315c34a4e0339d6733e98375 144 Gene3D G3DSA:3.30.530.20 5 143 1.1E-17 T 19-04-2016 IPR023393 START-like domain AMED_2448 8de1f2de315c34a4e0339d6733e98375 144 PANTHER PTHR39683 1 144 5.0E-48 T 19-04-2016 AMED_2448 8de1f2de315c34a4e0339d6733e98375 144 PANTHER PTHR39683:SF1 1 144 5.0E-48 T 19-04-2016 AMED_2448 8de1f2de315c34a4e0339d6733e98375 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 143 9.3E-15 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_2448 8de1f2de315c34a4e0339d6733e98375 144 SUPERFAMILY SSF55961 1 144 2.36E-30 T 19-04-2016 AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 Gene3D G3DSA:2.40.50.140 391 477 2.0E-28 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 369 773 4.9E-149 T 19-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 PANTHER PTHR30001 103 972 6.3E-271 T 19-04-2016 AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 SMART SM00316 392 471 5.3E-7 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 Pfam PF10150 Ribonuclease E/G family 473 746 4.9E-102 T 19-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 PANTHER PTHR30001:SF0 103 972 6.3E-271 T 19-04-2016 AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 29 76 9.4E-9 T 19-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal AMED_6707 bfa6cfb98774d1c5e0c1c645d042af5e 980 SUPERFAMILY SSF50249 394 477 2.86E-16 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 SUPERFAMILY SSF56801 12 507 7.85E-150 T 19-04-2016 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Gene3D G3DSA:3.40.50.980 166 325 8.1E-40 T 19-04-2016 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 43 437 1.4E-129 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Gene3D G3DSA:2.30.38.10 326 403 8.8E-29 T 19-04-2016 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 PANTHER PTHR24095 5 507 8.8E-172 T 19-04-2016 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 497 2.7E-11 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Pfam PF00501 AMP-binding enzyme 19 413 7.6E-97 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 ProSitePatterns PS00455 Putative AMP-binding domain signature. 156 167 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Gene3D G3DSA:3.40.50.980 14 165 2.1E-43 T 19-04-2016 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 PANTHER PTHR24095:SF137 5 507 8.8E-172 T 19-04-2016 AMED_6232 f5e9e44b0a38bbb2da7a91cb70d2cdaf 508 Gene3D G3DSA:3.30.300.30 407 507 2.5E-32 T 19-04-2016 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 Pfam PF00672 HAMP domain 180 245 2.0E-15 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 324 9.1E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 SMART SM00304 197 249 1.4E-14 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 Gene3D G3DSA:1.10.287.130 251 311 4.4E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 471 4.2E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 SMART SM00388 257 324 1.1E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 SMART SM00387 364 473 1.8E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 SUPERFAMILY SSF55874 313 471 3.14E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 Gene3D G3DSA:3.30.565.10 312 474 1.5E-40 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 SUPERFAMILY SSF158472 198 246 4.84E-9 T 19-04-2016 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 427 1.9E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 1.9E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 1.9E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 470 1.9E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 SUPERFAMILY SSF47384 242 324 6.28E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 PANTHER PTHR24423 1 7 2.4E-64 T 19-04-2016 AMED_3767 a17d90c18bf2da6a576dd2817aefc46b 476 PANTHER PTHR24423 191 475 2.4E-64 T 19-04-2016 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 SUPERFAMILY SSF52540 1 178 2.47E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 Pfam PF01121 Dephospho-CoA kinase 1 161 3.3E-49 T 19-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 1 161 1.7E-34 T 19-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 PANTHER PTHR10695 1 176 1.6E-53 T 19-04-2016 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 176 17.242 T 19-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 SUPERFAMILY SSF81301 198 371 8.5E-42 T 19-04-2016 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 Gene3D G3DSA:3.30.460.10 195 372 4.3E-50 T 19-04-2016 AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 Gene3D G3DSA:3.40.50.300 1 176 1.4E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6122 eace86f646c74368c1a2d3f89fc30902 378 Pfam PF04229 GrpB protein 197 364 6.4E-42 T 19-04-2016 IPR007344 GrpB/Dephospho-CoA kinase AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 PANTHER PTHR11659:SF0 15 498 7.1E-216 T 19-04-2016 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 SUPERFAMILY SSF89095 352 498 1.16E-26 T 19-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 SUPERFAMILY SSF55931 19 321 5.82E-113 T 19-04-2016 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 165 179 - T 19-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 PANTHER PTHR11659 15 498 7.1E-216 T 19-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 Pfam PF02637 GatB domain 352 498 2.0E-39 T 19-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 17 498 3.2E-146 T 19-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 Pfam PF02934 GatB/GatE catalytic domain 20 314 7.3E-106 T 19-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 16 500 35.953 T 19-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 Gene3D G3DSA:1.10.10.410 443 496 1.8E-4 T 19-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMED_1674 a666a8ea01e6b8dc99638f39fe4794b4 501 SMART SM00845 352 499 7.3E-56 T 19-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 Gene3D G3DSA:3.90.45.10 6 163 2.7E-51 T 19-04-2016 IPR023635 Peptide deformylase AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 156 2.3E-35 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 PIRSF PIRSF004749 1 162 4.7E-40 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 PANTHER PTHR10458 1 163 1.3E-49 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 Hamap MF_00163 Peptide deformylase [def]. 2 160 26.208 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 87 98 4.3E-25 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 33 62 4.3E-25 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 118 147 4.3E-25 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 PRINTS PR01576 Peptide deformylase signature 99 117 4.3E-25 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 Pfam PF01327 Polypeptide deformylase 3 150 1.3E-39 T 19-04-2016 IPR023635 Peptide deformylase AMED_2335 03dbf51431f941ed915440cb20e3deb9 166 SUPERFAMILY SSF56420 2 162 2.22E-49 T 19-04-2016 IPR023635 Peptide deformylase AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 SUPERFAMILY SSF55021 4 77 3.09E-6 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 Pfam PF13740 ACT domain 6 78 2.1E-17 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:3.30.70.260 4 78 3.4E-12 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:3.30.70.260 112 185 2.8E-8 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 Pfam PF12710 haloacid dehalogenase-like hydrolase 186 353 1.7E-27 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 PANTHER PTHR10000:SF7 180 394 3.8E-83 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:3.40.50.1000 247 375 1.3E-46 T 19-04-2016 IPR023214 HAD-like domain AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 171 388 6.0E-76 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 SUPERFAMILY SSF56784 183 391 3.74E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 PANTHER PTHR10000 180 394 3.8E-83 T 19-04-2016 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 Gene3D G3DSA:1.10.150.210 195 246 3.3E-23 T 19-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 AMED_7728 2af49d4a66c73987461f9bc48ff3ddc3 409 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 185 355 6.6E-33 T 19-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 AMED_1537 fd26e9b89196af3e27301de4827807b0 457 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 31 437 2.8E-32 T 19-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AMED_1537 fd26e9b89196af3e27301de4827807b0 457 PANTHER PTHR31806 22 449 3.8E-77 T 19-04-2016 AMED_1537 fd26e9b89196af3e27301de4827807b0 457 PIRSF PIRSF002744 6 454 4.6E-116 T 19-04-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 AMED_3663 c63cb57164d478bc1be1524225f17540 1062 Pfam PF05592 Bacterial alpha-L-rhamnosidase 519 1022 4.1E-136 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_3663 c63cb57164d478bc1be1524225f17540 1062 SUPERFAMILY SSF48208 639 1025 1.09E-36 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3663 c63cb57164d478bc1be1524225f17540 1062 SUPERFAMILY SSF49785 279 401 1.98E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3663 c63cb57164d478bc1be1524225f17540 1062 PANTHER PTHR33307 10 160 6.3E-241 T 19-04-2016 AMED_3663 c63cb57164d478bc1be1524225f17540 1062 PANTHER PTHR33307 319 1040 6.3E-241 T 19-04-2016 AMED_3663 c63cb57164d478bc1be1524225f17540 1062 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 339 508 5.1E-55 T 19-04-2016 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal AMED_3663 c63cb57164d478bc1be1524225f17540 1062 SUPERFAMILY SSF49785 145 255 7.17E-12 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3663 c63cb57164d478bc1be1524225f17540 1062 Gene3D G3DSA:2.60.120.260 284 401 5.2E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3663 c63cb57164d478bc1be1524225f17540 1062 Gene3D G3DSA:2.60.120.260 511 619 3.2E-12 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3663 c63cb57164d478bc1be1524225f17540 1062 PANTHER PTHR33307:SF5 10 160 6.3E-241 T 19-04-2016 AMED_3663 c63cb57164d478bc1be1524225f17540 1062 PANTHER PTHR33307:SF5 319 1040 6.3E-241 T 19-04-2016 AMED_3663 c63cb57164d478bc1be1524225f17540 1062 Gene3D G3DSA:2.60.120.260 171 255 1.9E-9 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 207 217 6.9E-17 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 154 175 6.9E-17 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 13 29 6.9E-17 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 62 81 6.9E-17 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 Gene3D G3DSA:3.40.50.620 4 217 1.2E-64 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 PANTHER PTHR10055 4 337 4.4E-121 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 PANTHER PTHR10055:SF10 4 337 4.4E-121 T 19-04-2016 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 SUPERFAMILY SSF52374 4 336 3.24E-69 T 19-04-2016 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 Pfam PF00579 tRNA synthetases class I (W and Y) 4 293 4.0E-55 T 19-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 Gene3D G3DSA:1.10.240.10 218 305 4.3E-15 T 19-04-2016 AMED_8033 1e0d90e3ac71e7a99d501626f6a0c82e 339 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 337 8.9E-77 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 SUPERFAMILY SSF46689 2 73 3.44E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 47 3.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 PANTHER PTHR30055 1 184 1.1E-40 T 19-04-2016 AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 Gene3D G3DSA:1.10.357.10 53 185 7.9E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 SUPERFAMILY SSF48498 78 184 2.15E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 PANTHER PTHR30055:SF78 1 184 1.1E-40 T 19-04-2016 AMED_0836 9edc9762da65aa9abbfca4f183bfd777 193 Gene3D G3DSA:1.10.10.60 1 50 4.5E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5947 2ee4925cc6bbf339cc82d760fdee1b84 434 Pfam PF07519 Tannase and feruloyl esterase 84 191 1.7E-7 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_5947 2ee4925cc6bbf339cc82d760fdee1b84 434 SUPERFAMILY SSF53474 325 379 7.54E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5947 2ee4925cc6bbf339cc82d760fdee1b84 434 SUPERFAMILY SSF53474 101 229 7.54E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5947 2ee4925cc6bbf339cc82d760fdee1b84 434 Gene3D G3DSA:3.40.50.1820 312 378 6.8E-15 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5947 2ee4925cc6bbf339cc82d760fdee1b84 434 Gene3D G3DSA:3.40.50.1820 101 217 6.8E-15 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8281 0a551dbe43f04962982d316650179532 313 Pfam PF13614 AAA domain 1 206 1.0E-35 T 19-04-2016 IPR025669 AAA domain AMED_8281 0a551dbe43f04962982d316650179532 313 Gene3D G3DSA:3.40.50.300 1 306 1.8E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8281 0a551dbe43f04962982d316650179532 313 PANTHER PTHR13696 83 313 3.2E-35 T 19-04-2016 AMED_8281 0a551dbe43f04962982d316650179532 313 PANTHER PTHR13696 1 61 3.2E-35 T 19-04-2016 AMED_8281 0a551dbe43f04962982d316650179532 313 SUPERFAMILY SSF52540 1 305 1.04E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8281 0a551dbe43f04962982d316650179532 313 PANTHER PTHR13696:SF52 83 313 3.2E-35 T 19-04-2016 AMED_8281 0a551dbe43f04962982d316650179532 313 PANTHER PTHR13696:SF52 1 61 3.2E-35 T 19-04-2016 AMED_9138 f355dd46166ce3aad4ccbe4e69b09e39 338 Pfam PF13407 Periplasmic binding protein domain 41 300 7.9E-54 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_9138 f355dd46166ce3aad4ccbe4e69b09e39 338 PANTHER PTHR32196 1 316 9.3E-41 T 19-04-2016 AMED_9138 f355dd46166ce3aad4ccbe4e69b09e39 338 Gene3D G3DSA:3.40.50.2300 38 154 1.0E-29 T 19-04-2016 AMED_9138 f355dd46166ce3aad4ccbe4e69b09e39 338 PANTHER PTHR32196:SF9 1 316 9.3E-41 T 19-04-2016 AMED_9138 f355dd46166ce3aad4ccbe4e69b09e39 338 SUPERFAMILY SSF53822 39 311 9.6E-61 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_9138 f355dd46166ce3aad4ccbe4e69b09e39 338 Gene3D G3DSA:3.40.50.2300 155 317 1.4E-39 T 19-04-2016 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 3 338 1.5E-160 T 19-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 354 162.869 T 19-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 Gene3D G3DSA:3.20.20.70 5 320 9.8E-66 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 Pfam PF13186 Iron-sulfur cluster-binding domain 236 302 2.8E-9 T 19-04-2016 IPR023885 4Fe4S-binding SPASM domain AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 SUPERFAMILY SSF102114 5 311 2.09E-69 T 19-04-2016 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 Pfam PF04055 Radical SAM superfamily 13 166 6.0E-20 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 PANTHER PTHR11228:SF32 2 339 4.5E-96 T 19-04-2016 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 PIRSF PIRSF037420 1 341 2.5E-102 T 19-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 239 329 1.3E-10 T 19-04-2016 IPR023885 4Fe4S-binding SPASM domain AMED_7866 61fe15e202614f1c7bc2ece8ee0d7688 354 PANTHER PTHR11228 2 339 4.5E-96 T 19-04-2016 AMED_2537 602aa3b8160d2bb061799195718477f8 76 SUPERFAMILY SSF54862 11 70 2.24E-9 T 19-04-2016 AMED_2537 602aa3b8160d2bb061799195718477f8 76 Pfam PF13459 4Fe-4S single cluster domain 12 69 2.8E-11 T 19-04-2016 AMED_2537 602aa3b8160d2bb061799195718477f8 76 PRINTS PR00352 3Fe-4S ferredoxin signature 25 35 5.9E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_2537 602aa3b8160d2bb061799195718477f8 76 PRINTS PR00352 3Fe-4S ferredoxin signature 14 25 5.9E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_2537 602aa3b8160d2bb061799195718477f8 76 PRINTS PR00352 3Fe-4S ferredoxin signature 56 68 5.9E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_2537 602aa3b8160d2bb061799195718477f8 76 Gene3D G3DSA:3.30.70.20 11 70 1.1E-11 T 19-04-2016 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 Gene3D G3DSA:1.10.10.60 2 61 1.6E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 PANTHER PTHR30055:SF53 1 184 1.7E-13 T 19-04-2016 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.4E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 SUPERFAMILY SSF48498 78 184 4.45E-25 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5698 d1f1639ffb42089df35546fafac853e9 187 Gene3D G3DSA:1.10.357.10 63 184 4.2E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 PANTHER PTHR30055 1 184 1.7E-13 T 19-04-2016 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 SUPERFAMILY SSF46689 2 66 1.44E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.5E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5698 d1f1639ffb42089df35546fafac853e9 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.5E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 Gene3D G3DSA:2.40.110.10 118 209 6.9E-28 T 19-04-2016 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 Gene3D G3DSA:1.20.140.10 210 371 2.6E-40 T 19-04-2016 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 PANTHER PTHR10909 25 372 2.5E-71 T 19-04-2016 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 Gene3D G3DSA:1.10.540.10 16 114 1.3E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 PANTHER PTHR10909:SF305 25 372 2.5E-71 T 19-04-2016 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 114 4.9E-15 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 SUPERFAMILY SSF47203 229 371 2.26E-35 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 370 4.2E-32 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 118 208 1.3E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_4757 07e7f42675efdcafaa03d2fe634fffe0 375 SUPERFAMILY SSF56645 16 219 2.62E-52 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 PANTHER PTHR11669 10 235 6.2E-56 T 19-04-2016 AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 Gene3D G3DSA:1.20.272.10 320 394 5.0E-4 T 19-04-2016 AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 SMART SM00382 44 185 2.1E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 SUPERFAMILY SSF52540 10 223 1.17E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 PANTHER PTHR11669:SF8 10 235 6.2E-56 T 19-04-2016 AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 Gene3D G3DSA:3.40.50.300 10 184 2.2E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 Pfam PF13177 DNA polymerase III, delta subunit 42 183 4.5E-34 T 19-04-2016 AMED_8787 3b67fb8fe75477e83349c09d208f6949 401 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 42 219 1.2E-55 T 19-04-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 Pfam PF00390 Malic enzyme, N-terminal domain 93 225 2.0E-27 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 PRINTS PR00072 Malic enzyme signature 154 176 4.3E-7 T 19-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 PRINTS PR00072 Malic enzyme signature 264 280 4.3E-7 T 19-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 PRINTS PR00072 Malic enzyme signature 233 249 4.3E-7 T 19-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 SMART SM00919 237 459 3.1E-101 T 19-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 Gene3D G3DSA:3.40.50.10380 92 234 5.0E-52 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 PANTHER PTHR23406 36 457 5.2E-165 T 19-04-2016 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 SMART SM01274 92 225 7.1E-81 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 SUPERFAMILY SSF53223 86 235 1.44E-54 T 19-04-2016 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 SUPERFAMILY SSF51735 237 460 3.44E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 PANTHER PTHR23406:SF23 36 457 5.2E-165 T 19-04-2016 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 PIRSF PIRSF000106 32 462 1.7E-77 T 19-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 Pfam PF03949 Malic enzyme, NAD binding domain 239 456 1.3E-21 T 19-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 AMED_8523 5ca939f0e38abc827dbb1179e1417a3f 462 Gene3D G3DSA:3.40.50.720 235 457 1.3E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 Gene3D G3DSA:3.40.50.300 3 224 4.3E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 Pfam PF00005 ABC transporter 19 159 1.0E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 PANTHER PTHR24220:SF523 4 221 1.5E-91 T 19-04-2016 AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 SMART SM00382 27 208 3.4E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 SUPERFAMILY SSF52540 3 221 2.71E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6582 ace16b27c02e2712e6c173881a30cfb5 301 PANTHER PTHR24220 4 221 1.5E-91 T 19-04-2016 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 PANTHER PTHR13767:SF2 1 274 8.3E-96 T 19-04-2016 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 SUPERFAMILY SSF88697 220 276 4.97E-12 T 19-04-2016 IPR015947 PUA-like domain AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 SUPERFAMILY SSF55120 1 208 1.09E-63 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 202 5.2E-64 T 19-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 Pfam PF09142 tRNA Pseudouridine synthase II, C terminal 220 274 7.0E-18 T 19-04-2016 IPR015225 tRNA pseudouridine synthase II, TruB, subfamily 2, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 274 14.037 T 19-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 PANTHER PTHR13767 1 274 8.3E-96 T 19-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 164 205 1.9E-12 T 19-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal AMED_6323 18604959edcb70d98b4da25ed2743cbb 277 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 11 163 2.9E-50 T 19-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMED_5642 f56d05b2b04ce33f6fc0315174abaacc 161 Pfam PF00106 short chain dehydrogenase 11 93 3.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5642 f56d05b2b04ce33f6fc0315174abaacc 161 PANTHER PTHR24322:SF620 14 94 2.6E-12 T 19-04-2016 AMED_5642 f56d05b2b04ce33f6fc0315174abaacc 161 SUPERFAMILY SSF51735 11 97 4.41E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5642 f56d05b2b04ce33f6fc0315174abaacc 161 PANTHER PTHR24322 14 94 2.6E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5642 f56d05b2b04ce33f6fc0315174abaacc 161 Gene3D G3DSA:3.40.50.720 10 93 2.4E-18 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 Gene3D G3DSA:3.40.50.980 12 162 1.7E-18 T 19-04-2016 AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 Gene3D G3DSA:2.30.38.10 360 384 5.4E-7 T 19-04-2016 AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 SUPERFAMILY SSF56801 11 482 4.71E-109 T 19-04-2016 AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 PANTHER PTHR24096 13 481 7.3E-100 T 19-04-2016 AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 Gene3D G3DSA:3.40.50.980 163 324 2.4E-28 T 19-04-2016 AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 Pfam PF13193 AMP-binding enzyme C-terminal domain 399 475 4.3E-22 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 Gene3D G3DSA:3.30.300.30 386 483 1.7E-32 T 19-04-2016 AMED_3828 accea5e152fd87b0906b1276f5c82d9a 488 Pfam PF00501 AMP-binding enzyme 21 390 1.1E-52 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5994 2f633456939e8194316b413975f8bc1f 764 Gene3D G3DSA:1.50.10.10 413 602 5.6E-6 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5994 2f633456939e8194316b413975f8bc1f 764 SUPERFAMILY SSF48208 247 697 1.87E-37 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5994 2f633456939e8194316b413975f8bc1f 764 PANTHER PTHR31084:SF4 237 697 1.5E-44 T 19-04-2016 AMED_5994 2f633456939e8194316b413975f8bc1f 764 PANTHER PTHR31084 237 697 1.5E-44 T 19-04-2016 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 SMART SM01008 349 427 3.2E-19 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 415 479 1.1E-4 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 693 858 6.6E-39 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 61 2.0E-4 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 526 692 5.2E-28 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:1.10.150.120 81 148 2.9E-21 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.30.365.10 182 315 4.6E-33 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF47741 72 151 8.24E-23 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF56003 453 858 1.44E-104 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.90.1170.50 316 414 4.2E-17 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF54292 2 77 1.22E-19 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF01799 [2Fe-2S] binding domain 72 143 3.9E-19 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 PANTHER PTHR11908:SF79 261 854 1.6E-143 T 19-04-2016 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 SUPERFAMILY SSF56003 176 383 4.19E-34 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Gene3D G3DSA:3.10.20.30 1 75 4.1E-24 T 19-04-2016 IPR012675 Beta-grasp domain AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 PANTHER PTHR11908 261 854 1.6E-143 T 19-04-2016 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 181 320 4.2E-16 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 451 694 9.0E-39 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_6466 e3e2c03a93d9c645a6d7970904018ba9 865 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 730 813 3.5E-14 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 Pfam PF13241 Putative NAD(P)-binding 10 117 5.6E-21 T 19-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 168 378 1.3E-48 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 Gene3D G3DSA:3.30.950.10 282 402 3.2E-42 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 SUPERFAMILY SSF51735 5 106 5.71E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 PANTHER PTHR21091 115 397 2.5E-68 T 19-04-2016 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 Gene3D G3DSA:3.40.50.720 10 112 1.1E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 PANTHER PTHR21091:SF16 115 397 2.5E-68 T 19-04-2016 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 Gene3D G3DSA:3.40.1010.10 168 281 5.8E-38 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 168 401 7.2E-81 T 19-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_4999 3f3f956275d924c8ac37a4fcd4a12064 406 SUPERFAMILY SSF53790 166 402 5.23E-70 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 Pfam PF00106 short chain dehydrogenase 7 193 2.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PANTHER PTHR24322 155 186 2.3E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PANTHER PTHR24322 11 139 2.3E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 SUPERFAMILY SSF51735 4 245 2.67E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PANTHER PTHR24322:SF57 155 186 2.3E-31 T 19-04-2016 AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PANTHER PTHR24322:SF57 11 139 2.3E-31 T 19-04-2016 AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 Gene3D G3DSA:3.40.50.720 7 237 3.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3486 0a23b5f5541e2df1d6797845cf08ab59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 PANTHER PTHR10996:SF167 1 333 9.9E-83 T 19-04-2016 AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 PANTHER PTHR10996 1 333 9.9E-83 T 19-04-2016 AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 237 253 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 Gene3D G3DSA:3.40.50.720 43 124 6.7E-12 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 SUPERFAMILY SSF52283 34 137 3.68E-9 T 19-04-2016 AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 Gene3D G3DSA:3.40.50.720 125 299 5.1E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 SUPERFAMILY SSF51735 110 298 6.79E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 36 328 1.3E-5 T 19-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 208 230 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_3191 a4ec3799669b4085ea4cdda9238a2090 337 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 127 297 1.5E-43 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 SMART SM00331 160 381 1.4E-32 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 PANTHER PTHR21021:SF19 113 388 4.1E-51 T 19-04-2016 AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 SUPERFAMILY SSF81606 163 346 1.41E-8 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 SUPERFAMILY SSF55785 3 107 3.14E-13 T 19-04-2016 IPR000014 PAS domain AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 PANTHER PTHR21021 113 388 4.1E-51 T 19-04-2016 AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 127 2.2E-7 T 19-04-2016 IPR000014 PAS domain AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 Gene3D G3DSA:3.30.450.20 6 116 4.4E-9 T 19-04-2016 AMED_7427 c841cf0b943d07921ef5e51e65668cf9 389 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 189 380 3.3E-41 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_0750 537fa528c280fedf271e13a1a97a8392 383 PANTHER PTHR18964:SF2 1 373 6.2E-96 T 19-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 AMED_0750 537fa528c280fedf271e13a1a97a8392 383 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 2 360 6.4E-108 T 19-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 AMED_0750 537fa528c280fedf271e13a1a97a8392 383 SUPERFAMILY SSF53756 3 372 4.76E-99 T 19-04-2016 AMED_0750 537fa528c280fedf271e13a1a97a8392 383 PANTHER PTHR18964 1 373 6.2E-96 T 19-04-2016 AMED_0750 537fa528c280fedf271e13a1a97a8392 383 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 366 6.0E-94 T 19-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain AMED_0750 537fa528c280fedf271e13a1a97a8392 383 Gene3D G3DSA:3.40.50.2000 3 210 2.4E-61 T 19-04-2016 AMED_0750 537fa528c280fedf271e13a1a97a8392 383 Gene3D G3DSA:3.40.50.2000 211 367 1.5E-50 T 19-04-2016 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Pfam PF13361 UvrD-like helicase C-terminal domain 304 454 9.9E-36 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Pfam PF13361 UvrD-like helicase C-terminal domain 528 669 1.7E-25 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:3.40.50.300 313 415 1.8E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:3.40.50.300 607 698 1.8E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 PANTHER PTHR11070 575 706 1.4E-222 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 PANTHER PTHR11070 21 546 1.4E-222 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 SUPERFAMILY SSF52540 24 697 2.41E-175 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:1.10.10.160 132 205 4.3E-25 T 19-04-2016 IPR013986 DExx box DNA helicase domain AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:1.10.486.10 416 583 9.7E-46 T 19-04-2016 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 PANTHER PTHR11070:SF7 575 706 1.4E-222 T 19-04-2016 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 PANTHER PTHR11070:SF7 21 546 1.4E-222 T 19-04-2016 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 24 794 6.9E-288 T 19-04-2016 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Pfam PF00580 UvrD/REP helicase N-terminal domain 28 298 1.8E-79 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:3.40.50.300 23 128 5.7E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0798 993c7c7ebec45e13cebe6dcb42010ff2 804 Gene3D G3DSA:3.40.50.300 207 312 5.7E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0810 e67ae7349b6abe70231ecf177be8e4e6 162 SUPERFAMILY SSF55729 5 137 9.66E-25 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0810 e67ae7349b6abe70231ecf177be8e4e6 162 PANTHER PTHR23091:SF264 1 131 2.3E-16 T 19-04-2016 AMED_0810 e67ae7349b6abe70231ecf177be8e4e6 162 Pfam PF00583 Acetyltransferase (GNAT) family 58 131 8.5E-14 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_0810 e67ae7349b6abe70231ecf177be8e4e6 162 Gene3D G3DSA:3.40.630.30 2 151 1.3E-25 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0810 e67ae7349b6abe70231ecf177be8e4e6 162 PANTHER PTHR23091 1 131 2.3E-16 T 19-04-2016 AMED_3044 aa683d5a32a877962586b55c555514c5 494 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 481 2.5E-214 T 19-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 AMED_3044 aa683d5a32a877962586b55c555514c5 494 PANTHER PTHR11699 1 482 5.1E-245 T 19-04-2016 AMED_3044 aa683d5a32a877962586b55c555514c5 494 SUPERFAMILY SSF53720 3 483 1.57E-143 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_3044 aa683d5a32a877962586b55c555514c5 494 Pfam PF00171 Aldehyde dehydrogenase family 18 477 2.9E-137 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_3044 aa683d5a32a877962586b55c555514c5 494 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_3044 aa683d5a32a877962586b55c555514c5 494 Gene3D G3DSA:3.40.605.10 3 260 6.8E-85 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_3044 aa683d5a32a877962586b55c555514c5 494 PANTHER PTHR11699:SF27 1 482 5.1E-245 T 19-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 AMED_3044 aa683d5a32a877962586b55c555514c5 494 Gene3D G3DSA:3.40.309.10 261 442 5.9E-66 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 Pfam PF03466 LysR substrate binding domain 92 289 1.4E-38 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 PANTHER PTHR30346:SF6 4 289 2.2E-78 T 19-04-2016 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.1E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.1E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.1E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 Gene3D G3DSA:3.40.190.10 176 265 3.1E-28 T 19-04-2016 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 SUPERFAMILY SSF46785 4 112 1.15E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 SUPERFAMILY SSF53850 92 293 3.88E-35 T 19-04-2016 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 Gene3D G3DSA:1.10.10.10 3 82 1.5E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.8E-20 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 Gene3D G3DSA:3.40.190.10 90 175 2.0E-23 T 19-04-2016 AMED_4865 843ef5f81f283f67f8a447f6df1ab6ad 300 PANTHER PTHR30346 4 289 2.2E-78 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 Gene3D G3DSA:3.50.50.60 171 332 3.8E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 324 1.1E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PANTHER PTHR22912 158 332 6.1E-24 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PANTHER PTHR22912 1 141 6.1E-24 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 159 177 3.5E-12 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 3.5E-12 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 301 3.5E-12 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 3.5E-12 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PANTHER PTHR22912:SF180 158 332 6.1E-24 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PANTHER PTHR22912:SF180 1 141 6.1E-24 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 3.0E-6 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 294 301 3.0E-6 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 184 3.0E-6 T 19-04-2016 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 SUPERFAMILY SSF51905 150 335 1.52E-20 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 SUPERFAMILY SSF51905 1 175 1.2E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5223 b23aafcdcd3a1a1eeed737e28124845a 429 Gene3D G3DSA:3.50.50.60 1 170 7.5E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 Gene3D G3DSA:3.40.50.980 14 162 3.3E-35 T 19-04-2016 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 PANTHER PTHR24096 14 503 4.7E-141 T 19-04-2016 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 Gene3D G3DSA:3.40.50.980 163 319 8.6E-40 T 19-04-2016 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 SUPERFAMILY SSF56801 11 503 1.57E-133 T 19-04-2016 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 Gene3D G3DSA:2.30.38.10 320 403 8.6E-18 T 19-04-2016 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 Gene3D G3DSA:3.30.300.30 408 503 1.9E-29 T 19-04-2016 AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 153 164 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 496 8.2E-18 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_0476 8f056a6b5c29029ef656a9de910a5526 503 Pfam PF00501 AMP-binding enzyme 16 412 6.9E-92 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF51445 696 998 9.28E-58 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.120.260 50 206 6.5E-20 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49785 49 205 8.51E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49785 612 698 2.84E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Pfam PF00754 F5/8 type C domain 61 194 1.2E-10 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Pfam PF00754 F5/8 type C domain 618 695 1.0E-21 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 PANTHER PTHR10066:SF66 415 558 7.7E-156 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 PANTHER PTHR10066:SF66 696 1171 7.7E-156 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 PANTHER PTHR10066:SF66 175 395 7.7E-156 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.120.260 219 429 1.5E-29 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49303 1002 1099 1.34E-21 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49785 233 441 3.77E-35 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49303 444 551 1.47E-22 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 SUPERFAMILY SSF49303 1084 1190 2.45E-24 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.40.320 430 552 6.0E-14 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:3.20.20.80 935 1000 3.0E-32 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:3.20.20.80 702 893 3.0E-32 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Gene3D G3DSA:2.60.120.260 598 701 1.3E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 PANTHER PTHR10066 415 558 7.7E-156 T 19-04-2016 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 PANTHER PTHR10066 696 1171 7.7E-156 T 19-04-2016 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 PANTHER PTHR10066 175 395 7.7E-156 T 19-04-2016 AMED_4469 b5c66ba918b859ebe9b84d13daae22de 1193 Pfam PF00703 Glycosyl hydrolases family 2 448 551 7.6E-11 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 Gene3D G3DSA:1.10.10.10 148 202 1.2E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 SUPERFAMILY SSF52172 15 199 3.56E-58 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 PIRSF PIRSF036382 6 204 6.1E-72 T 19-04-2016 IPR008327 Signal transduction response regulator, antiterminator AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 Gene3D G3DSA:3.40.50.2300 15 138 3.2E-36 T 19-04-2016 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 SMART SM01012 144 199 1.6E-26 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 Pfam PF00072 Response regulator receiver domain 19 128 1.4E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 PANTHER PTHR26402:SF474 17 162 6.2E-44 T 19-04-2016 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 Pfam PF03861 ANTAR domain 148 199 2.4E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 SMART SM00448 17 128 2.4E-35 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6148 08947f8ff7d6f5c2777cfe726d6672f6 204 PANTHER PTHR26402 17 162 6.2E-44 T 19-04-2016 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 PIRSF PIRSF000808 34 360 2.1E-110 T 19-04-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 39 197 9.9E-40 T 19-04-2016 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 40 358 1.3E-47 T 19-04-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 PANTHER PTHR11943 25 360 9.7E-119 T 19-04-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 209 357 2.1E-18 T 19-04-2016 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 Gene3D G3DSA:3.30.428.10 199 359 6.2E-52 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 173 190 - T 19-04-2016 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 Gene3D G3DSA:3.30.428.10 64 197 3.4E-40 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 SUPERFAMILY SSF54197 202 359 5.44E-36 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_8330 6e57402dc58c281ab65803118a6435b0 360 SUPERFAMILY SSF54197 37 198 1.38E-52 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 PANTHER PTHR36923 1 64 6.0E-18 T 19-04-2016 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 PANTHER PTHR36923:SF1 1 64 6.0E-18 T 19-04-2016 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 SUPERFAMILY SSF54862 2 63 9.42E-14 T 19-04-2016 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 2.2E-13 T 19-04-2016 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 Gene3D G3DSA:3.30.70.20 1 65 4.3E-18 T 19-04-2016 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 2.3E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 2.3E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7230 d6b87aed70ecebe52a0e6ca737396b63 66 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 2.3E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 PANTHER PTHR24095 13 744 4.1E-140 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 PANTHER PTHR24095:SF137 13 744 4.1E-140 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:2.30.38.10 561 638 2.4E-21 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 SUPERFAMILY SSF56801 223 743 6.41E-126 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:3.40.50.980 252 403 8.0E-33 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 SUPERFAMILY SSF52777 10 216 3.56E-23 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 278 672 1.3E-105 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:3.40.50.980 404 560 7.1E-33 T 19-04-2016 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 ProSitePatterns PS00455 Putative AMP-binding domain signature. 394 405 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Pfam PF00501 AMP-binding enzyme 257 648 7.7E-74 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Pfam PF13193 AMP-binding enzyme C-terminal domain 659 731 4.0E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Pfam PF00668 Condensation domain 11 93 2.4E-6 T 19-04-2016 IPR001242 Condensation domain AMED_5311 e43525d3416a31070fd31179ecbc2ed4 755 Gene3D G3DSA:3.30.300.30 642 741 5.4E-29 T 19-04-2016 AMED_9026 703e8433468c4af6b0ea404df19a37de 273 PIRSF PIRSF037395 9 271 2.7E-92 T 19-04-2016 IPR017196 ECF transporter, predicted substrate-specific component UCP037395 AMED_9026 703e8433468c4af6b0ea404df19a37de 273 Pfam PF12822 Protein of unknown function (DUF3816) 79 247 1.4E-14 T 19-04-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 SUPERFAMILY SSF52540 325 578 3.03E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3743 66163a2f8161312164d977dd1cde0e82 604 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 301 3.5E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 SMART SM00382 353 556 3.1E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3743 66163a2f8161312164d977dd1cde0e82 604 Gene3D G3DSA:3.40.50.300 324 580 4.0E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3743 66163a2f8161312164d977dd1cde0e82 604 PANTHER PTHR24220 327 589 8.1E-98 T 19-04-2016 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 PANTHER PTHR24220:SF535 327 589 8.1E-98 T 19-04-2016 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 Gene3D G3DSA:1.10.3720.10 86 290 1.2E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 Pfam PF00005 ABC transporter 344 506 4.3E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3743 66163a2f8161312164d977dd1cde0e82 604 SUPERFAMILY SSF161098 91 272 2.75E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 SUPERFAMILY SSF102114 35 296 3.27E-61 T 19-04-2016 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 Pfam PF04055 Radical SAM superfamily 81 234 2.8E-12 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 24 60 5.9E-8 T 19-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 TIGRFAM TIGR00510 lipA: lipoyl synthase 18 302 5.6E-99 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 SMART SM00729 71 277 1.2E-12 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 Hamap MF_00206 Lipoyl synthase [lipA]. 1 307 138.999 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 PIRSF PIRSF005963 2 317 3.5E-120 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 PANTHER PTHR10949 12 301 9.4E-141 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_1817 126d0ac96e6c91ae4114e3f52976db2b 333 Gene3D G3DSA:3.20.20.70 39 301 7.4E-66 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 Pfam PF13280 WYL domain 143 318 1.2E-24 T 19-04-2016 IPR026881 WYL domain AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 PANTHER PTHR30595:SF3 4 325 8.4E-38 T 19-04-2016 AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 Pfam PF08279 HTH domain 12 67 1.9E-15 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 Gene3D G3DSA:1.10.10.10 8 70 2.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 ProSitePatterns PS00894 DeoR-type HTH domain signature. 12 46 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 PIRSF PIRSF016838 3 327 4.8E-22 T 19-04-2016 IPR028349 Protein PafC AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 PANTHER PTHR30595 4 325 8.4E-38 T 19-04-2016 AMED_3081 4daca5b424f6e7aefdf5c17618356045 327 SUPERFAMILY SSF46785 10 68 6.51E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 Gene3D G3DSA:1.10.10.10 115 172 1.8E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 172 3.9E-16 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 Gene3D G3DSA:1.10.1740.10 2 100 2.8E-20 T 19-04-2016 AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 PANTHER PTHR30173 1 172 4.0E-28 T 19-04-2016 AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 SUPERFAMILY SSF88659 108 172 4.49E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 Pfam PF04545 Sigma-70, region 4 122 171 3.1E-13 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 Pfam PF04542 Sigma-70 region 2 23 86 8.1E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6435 1e86c92a74a678cf09fe14d4d3c5c769 184 SUPERFAMILY SSF88946 3 95 2.2E-17 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0172 137753569311af00cb1edf84e148a15b 461 SMART SM00479 19 183 1.1E-5 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMED_0172 137753569311af00cb1edf84e148a15b 461 Pfam PF00929 Exonuclease 22 106 2.9E-7 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMED_0172 137753569311af00cb1edf84e148a15b 461 Gene3D G3DSA:3.30.420.10 18 180 6.9E-26 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_0172 137753569311af00cb1edf84e148a15b 461 SUPERFAMILY SSF53098 17 181 4.86E-23 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_0172 137753569311af00cb1edf84e148a15b 461 SUPERFAMILY SSF158682 232 307 4.05E-5 T 19-04-2016 IPR029024 TerB-like AMED_0172 137753569311af00cb1edf84e148a15b 461 PANTHER PTHR30231 15 189 1.1E-17 T 19-04-2016 AMED_4016 b0040b6016fe421fded120c1f66d99cb 266 Pfam PF12697 Alpha/beta hydrolase family 8 256 6.0E-16 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4016 b0040b6016fe421fded120c1f66d99cb 266 SUPERFAMILY SSF53474 4 263 5.45E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4016 b0040b6016fe421fded120c1f66d99cb 266 Gene3D G3DSA:3.40.50.1820 3 263 5.6E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3441 d02d3572a51cb991d3dac270794d3e91 181 PANTHER PTHR33169:SF4 1 180 8.5E-52 T 19-04-2016 AMED_3441 d02d3572a51cb991d3dac270794d3e91 181 PANTHER PTHR33169 1 180 8.5E-52 T 19-04-2016 AMED_3441 d02d3572a51cb991d3dac270794d3e91 181 Pfam PF10400 Virulence activator alpha C-term 85 173 1.4E-20 T 19-04-2016 IPR018309 Transcription regulator PadR, C-terminal AMED_3441 d02d3572a51cb991d3dac270794d3e91 181 Pfam PF03551 Transcriptional regulator PadR-like family 4 73 1.7E-11 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_3441 d02d3572a51cb991d3dac270794d3e91 181 SUPERFAMILY SSF46785 2 174 6.98E-36 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3441 d02d3572a51cb991d3dac270794d3e91 181 Gene3D G3DSA:1.10.10.10 2 79 5.5E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 PANTHER PTHR24286:SF42 23 205 2.4E-22 T 19-04-2016 AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 SUPERFAMILY SSF48264 11 204 4.24E-27 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 Gene3D G3DSA:1.10.630.10 10 204 4.1E-46 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 PANTHER PTHR24286 23 205 2.4E-22 T 19-04-2016 AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 PRINTS PR00359 B-class P450 signature 139 155 7.3E-12 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 PRINTS PR00359 B-class P450 signature 156 171 7.3E-12 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6438 1c2fe0268c52ec948f5567b5cba60eec 219 PRINTS PR00359 B-class P450 signature 92 103 7.3E-12 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5713 a96971e55b734eb345fece00d4691fa0 109 SUPERFAMILY SSF159894 5 103 4.71E-14 T 19-04-2016 AMED_5713 a96971e55b734eb345fece00d4691fa0 109 Pfam PF04993 TfoX N-terminal domain 16 102 1.7E-12 T 19-04-2016 IPR007076 TfoX, N-terminal AMED_8528 80b80cdf8673a36fdc057bd96268fd97 138 SUPERFAMILY SSF103196 3 127 5.06E-33 T 19-04-2016 AMED_8528 80b80cdf8673a36fdc057bd96268fd97 138 SMART SM00960 10 100 2.3E-30 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_8528 80b80cdf8673a36fdc057bd96268fd97 138 Gene3D G3DSA:3.30.450.30 10 124 1.2E-25 T 19-04-2016 AMED_8528 80b80cdf8673a36fdc057bd96268fd97 138 Pfam PF03259 Roadblock/LC7 domain 11 100 1.5E-22 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_8528 80b80cdf8673a36fdc057bd96268fd97 138 PANTHER PTHR36222 1 138 2.4E-51 T 19-04-2016 AMED_3553 6b6b7ecb732cf72d6f87c30238168d71 396 Pfam PF00144 Beta-lactamase 50 371 7.8E-51 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3553 6b6b7ecb732cf72d6f87c30238168d71 396 SUPERFAMILY SSF56601 41 369 4.95E-65 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3553 6b6b7ecb732cf72d6f87c30238168d71 396 ProSitePatterns PS00146 Beta-lactamase class-A active site. 91 106 - T 19-04-2016 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 AMED_3553 6b6b7ecb732cf72d6f87c30238168d71 396 Gene3D G3DSA:3.40.710.10 41 380 4.0E-65 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3553 6b6b7ecb732cf72d6f87c30238168d71 396 PANTHER PTHR22935 41 364 1.6E-49 T 19-04-2016 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 ProSitePatterns PS00202 Rubredoxin signature. 441 451 - T 19-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 PRINTS PR00163 Rubredoxin signature 411 427 7.2E-5 T 19-04-2016 IPR024935 Rubredoxin domain GO:0005506 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 PRINTS PR00163 Rubredoxin signature 441 457 7.2E-5 T 19-04-2016 IPR024935 Rubredoxin domain GO:0005506 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 Pfam PF00301 Rubredoxin 413 458 5.6E-18 T 19-04-2016 IPR024935 Rubredoxin domain GO:0005506 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 Gene3D G3DSA:2.20.28.10 413 459 2.9E-18 T 19-04-2016 IPR004039 Rubredoxin-type fold AMED_6400 c1406bb62598b7d55804cecba5b98226 472 Pfam PF00487 Fatty acid desaturase 124 342 3.7E-32 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 SUPERFAMILY SSF57802 413 455 1.45E-14 T 19-04-2016 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 PANTHER PTHR38674:SF1 1 409 3.8E-109 T 19-04-2016 AMED_6400 c1406bb62598b7d55804cecba5b98226 472 PIRSF PIRSF036487 1 466 3.6E-287 T 19-04-2016 IPR014607 Alkane 1-monooxygenase, rubredoxin-type AMED_6400 c1406bb62598b7d55804cecba5b98226 472 PANTHER PTHR38674 1 409 3.8E-109 T 19-04-2016 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 PANTHER PTHR22935 266 531 1.2E-83 T 19-04-2016 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Pfam PF07969 Amidohydrolase family 45 507 7.1E-52 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 SUPERFAMILY SSF51338 1 55 6.76E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 SUPERFAMILY SSF51338 465 515 6.76E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 PANTHER PTHR22935:SF55 266 531 1.2E-83 T 19-04-2016 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Gene3D G3DSA:2.30.40.10 1 67 2.1E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Gene3D G3DSA:3.20.20.140 389 449 4.9E-113 T 19-04-2016 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Gene3D G3DSA:3.20.20.140 68 284 4.9E-113 T 19-04-2016 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 Gene3D G3DSA:2.30.40.10 450 515 3.2E-9 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 SUPERFAMILY SSF51556 55 292 9.53E-73 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6064 791ef3a2bb1f08d1c8df393c6ed34dcf 531 SUPERFAMILY SSF51556 335 465 9.53E-73 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 SMART SM00382 86 240 1.5E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 SUPERFAMILY SSF52540 69 289 1.63E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 Pfam PF13481 AAA domain 55 218 3.4E-16 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 Gene3D G3DSA:3.40.50.300 68 271 1.4E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PANTHER PTHR32472:SF10 5 447 1.2E-175 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 170 194 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 9 33 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 209 237 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 244 270 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 78 106 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 318 341 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PRINTS PR01874 DNA repair protein radA signature 120 137 4.2E-84 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 SUPERFAMILY SSF54211 299 448 1.4E-30 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 SUPERFAMILY SSF54211 251 265 1.4E-30 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 PANTHER PTHR32472 5 447 1.2E-175 T 19-04-2016 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 445 2.3E-159 T 19-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMED_8676 3dd4126fa1c84a1e5ad17945207f2885 452 Gene3D G3DSA:3.30.230.10 280 448 2.6E-26 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 359 2.3E-110 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 Pfam PF02595 Glycerate kinase family 3 359 5.7E-127 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 PIRSF PIRSF006078 1 365 1.8E-117 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 PANTHER PTHR21599 2 359 1.7E-117 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 PANTHER PTHR21599:SF0 2 359 1.7E-117 T 19-04-2016 AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 SUPERFAMILY SSF110738 2 359 2.88E-111 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_4589 d3b02805612ef6b03695ba4d26f6f0b8 365 Gene3D G3DSA:3.90.1510.10 43 264 1.1E-83 T 19-04-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 AMED_6706 802a8b748debdfd942224b8a6c7f20e4 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 3 104 22.064 T 19-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6706 802a8b748debdfd942224b8a6c7f20e4 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 4 102 2.7E-25 T 19-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6706 802a8b748debdfd942224b8a6c7f20e4 104 PANTHER PTHR21349 4 102 2.7E-31 T 19-04-2016 AMED_6706 802a8b748debdfd942224b8a6c7f20e4 104 SUPERFAMILY SSF141091 4 103 2.22E-32 T 19-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 AMED_6706 802a8b748debdfd942224b8a6c7f20e4 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 19-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6706 802a8b748debdfd942224b8a6c7f20e4 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 4 102 1.0E-33 T 19-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.2E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 2.2E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 2.2E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.2E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.2E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 Gene3D G3DSA:3.40.50.720 4 239 9.1E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 SUPERFAMILY SSF51735 5 239 1.28E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 Pfam PF00106 short chain dehydrogenase 5 204 6.9E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PANTHER PTHR24322 9 139 2.1E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PANTHER PTHR24322 166 198 2.1E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 209 0.0068 T 19-04-2016 AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 7.6E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 7.6E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5618 44d601653574d7f36b9fd71c7cf7bad7 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 7.6E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6646 f3eebcc1a1cb2dd97e243e336085d41f 332 PANTHER PTHR30011:SF27 14 330 7.9E-81 T 19-04-2016 AMED_6646 f3eebcc1a1cb2dd97e243e336085d41f 332 Pfam PF00296 Luciferase-like monooxygenase 1 305 1.4E-54 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6646 f3eebcc1a1cb2dd97e243e336085d41f 332 TIGRFAM TIGR03842 F420_CPS_4043: F420-dependent oxidoreductase, CPS_4043 family 2 330 8.5E-174 T 19-04-2016 IPR022315 F420-dependent oxidoreductase-predicted, CPS4043 AMED_6646 f3eebcc1a1cb2dd97e243e336085d41f 332 PANTHER PTHR30011 14 330 7.9E-81 T 19-04-2016 AMED_6646 f3eebcc1a1cb2dd97e243e336085d41f 332 SUPERFAMILY SSF51679 1 328 3.93E-58 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6646 f3eebcc1a1cb2dd97e243e336085d41f 332 Gene3D G3DSA:3.20.20.30 1 331 6.7E-70 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6367 f8b13e919f9f841d370584d02e67561e 249 SUPERFAMILY SSF52096 3 248 2.96E-73 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6367 f8b13e919f9f841d370584d02e67561e 249 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 94 114 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_6367 f8b13e919f9f841d370584d02e67561e 249 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 248 7.0E-59 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_6367 f8b13e919f9f841d370584d02e67561e 249 PANTHER PTHR11941 3 246 1.0E-78 T 19-04-2016 AMED_6367 f8b13e919f9f841d370584d02e67561e 249 Gene3D G3DSA:3.90.226.10 2 247 2.4E-75 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 Gene3D G3DSA:3.40.50.300 426 655 1.5E-77 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 SUPERFAMILY SSF52540 419 662 2.66E-87 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 Gene3D G3DSA:1.20.1560.10 55 411 2.3E-85 T 19-04-2016 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 PANTHER PTHR24221:SF271 45 107 0.0 T 19-04-2016 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 PANTHER PTHR24221:SF271 145 670 0.0 T 19-04-2016 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 SMART SM00382 451 637 1.5E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 Pfam PF00664 ABC transporter transmembrane region 70 380 6.0E-59 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 PANTHER PTHR24221 45 107 0.0 T 19-04-2016 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 PANTHER PTHR24221 145 670 0.0 T 19-04-2016 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 ProSitePatterns PS00211 ABC transporters family signature. 563 577 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 Pfam PF00005 ABC transporter 443 591 3.8E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 SUPERFAMILY SSF90123 140 413 6.15E-83 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5274 84147d7ec68f34d640d2f14de89a756f 670 SUPERFAMILY SSF90123 51 99 6.15E-83 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 SUPERFAMILY SSF47384 218 302 1.16E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 452 1.1E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 SUPERFAMILY SSF158472 182 231 1.7E-7 T 19-04-2016 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 Gene3D G3DSA:1.10.287.130 228 298 8.0E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 301 5.1E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 SMART SM00304 182 234 2.2E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 SMART SM00388 235 302 4.1E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 SMART SM00387 342 453 1.5E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 Gene3D G3DSA:3.30.565.10 309 450 5.0E-38 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 SUPERFAMILY SSF55874 307 452 4.27E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 Pfam PF00672 HAMP domain 163 230 4.5E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 PANTHER PTHR24423 1 9 2.7E-63 T 19-04-2016 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 PANTHER PTHR24423 176 450 2.7E-63 T 19-04-2016 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 4.0E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 4.0E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 4.0E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5727 f91825240ed9696a48e27cf8db256b1b 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 450 4.0E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Gene3D G3DSA:1.10.540.10 10 120 2.0E-16 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 224 362 2.0E-23 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 PANTHER PTHR10909:SF302 7 364 6.5E-84 T 19-04-2016 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 SUPERFAMILY SSF56645 4 188 5.5E-20 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 SUPERFAMILY SSF47203 227 363 2.58E-32 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 PANTHER PTHR10909 7 364 6.5E-84 T 19-04-2016 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 106 3.0E-12 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3138 e5b38b14e48ac0f7f72d5c9617eb88d9 368 Gene3D G3DSA:1.20.140.10 230 364 3.4E-31 T 19-04-2016 AMED_6497 6c65dd5f2b82a7df81623d170c460661 301 PANTHER PTHR30622 166 301 2.5E-67 T 19-04-2016 AMED_6497 6c65dd5f2b82a7df81623d170c460661 301 PANTHER PTHR30622 1 150 2.5E-67 T 19-04-2016 AMED_6497 6c65dd5f2b82a7df81623d170c460661 301 Pfam PF02673 Bacitracin resistance protein BacA 7 292 1.9E-65 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_6497 6c65dd5f2b82a7df81623d170c460661 301 PANTHER PTHR30622:SF4 166 301 2.5E-67 T 19-04-2016 AMED_6497 6c65dd5f2b82a7df81623d170c460661 301 PANTHER PTHR30622:SF4 1 150 2.5E-67 T 19-04-2016 AMED_6497 6c65dd5f2b82a7df81623d170c460661 301 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 298 15.801 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_4131 d2930c52b316340fb88c59156ae28602 342 Gene3D G3DSA:3.40.50.180 8 192 6.6E-61 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_4131 d2930c52b316340fb88c59156ae28602 342 PIRSF PIRSF036461 2 340 1.1E-77 T 19-04-2016 IPR011247 Chemotaxis protein-glutamate methylesterase AMED_4131 d2930c52b316340fb88c59156ae28602 342 PANTHER PTHR24421:SF16 8 208 1.2E-36 T 19-04-2016 AMED_4131 d2930c52b316340fb88c59156ae28602 342 PANTHER PTHR24421 8 208 1.2E-36 T 19-04-2016 AMED_4131 d2930c52b316340fb88c59156ae28602 342 SUPERFAMILY SSF52738 8 191 5.62E-53 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_4131 d2930c52b316340fb88c59156ae28602 342 Pfam PF01339 CheB methylesterase 12 185 6.6E-51 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 3.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 78 215 9.3E-14 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 Gene3D G3DSA:1.10.10.60 4 63 4.1E-23 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 SUPERFAMILY SSF48498 79 218 3.67E-25 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PANTHER PTHR30328 6 101 2.3E-20 T 19-04-2016 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 Gene3D G3DSA:1.10.357.10 64 217 4.5E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PANTHER PTHR30328:SF17 6 101 2.3E-20 T 19-04-2016 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 4.3E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 4.3E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00400 Tetracycline repressor protein signature 199 213 9.2E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00400 Tetracycline repressor protein signature 81 100 9.2E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 PRINTS PR00400 Tetracycline repressor protein signature 26 49 9.2E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_7494 d586b8e525877b6d05275090b709ea0a 219 SUPERFAMILY SSF46689 8 72 2.67E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 PANTHER PTHR26402:SF151 2 215 4.0E-77 T 19-04-2016 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 Gene3D G3DSA:1.10.10.10 155 214 2.0E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 SMART SM00421 152 209 7.0E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 6.8E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 6.8E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 6.8E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 SUPERFAMILY SSF46894 143 215 1.02E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 SUPERFAMILY SSF52172 2 133 3.27E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 208 5.6E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 SMART SM00448 2 115 3.7E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 Pfam PF00072 Response regulator receiver domain 4 113 1.5E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 PANTHER PTHR26402 2 215 4.0E-77 T 19-04-2016 AMED_1278 7426fe97f7b35bebc7cc19d12e2ca008 224 Gene3D G3DSA:3.40.50.2300 2 154 6.4E-38 T 19-04-2016 AMED_3657 4820beb0532bd612617d7074c8c2774c 117 Gene3D G3DSA:3.10.450.50 8 116 4.5E-14 T 19-04-2016 IPR032710 NTF2-like domain AMED_3657 4820beb0532bd612617d7074c8c2774c 117 SUPERFAMILY SSF54427 8 116 2.24E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_3657 4820beb0532bd612617d7074c8c2774c 117 Pfam PF13474 SnoaL-like domain 8 115 6.5E-8 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3657 4820beb0532bd612617d7074c8c2774c 117 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 8 113 8.0E-13 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_6463 e34f1b77be7e442f53723dc99528508f 279 Pfam PF00248 Aldo/keto reductase family 2 237 7.9E-30 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6463 e34f1b77be7e442f53723dc99528508f 279 PANTHER PTHR11732 1 264 1.4E-63 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_6463 e34f1b77be7e442f53723dc99528508f 279 Gene3D G3DSA:3.20.20.100 2 243 3.5E-44 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6463 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 5 29 4.6E-10 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6463 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 62 80 4.6E-10 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6463 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 97 114 4.6E-10 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6463 e34f1b77be7e442f53723dc99528508f 279 PRINTS PR00069 Aldo-keto reductase signature 172 196 4.6E-10 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6463 e34f1b77be7e442f53723dc99528508f 279 PANTHER PTHR11732:SF136 1 264 1.4E-63 T 19-04-2016 AMED_6463 e34f1b77be7e442f53723dc99528508f 279 SUPERFAMILY SSF51430 2 238 8.77E-45 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 Hamap MF_00384 Homoserine kinase [thrB]. 4 291 27.484 T 19-04-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 Gene3D G3DSA:3.30.70.890 164 264 2.7E-30 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 Pfam PF08544 GHMP kinases C terminal 225 264 4.6E-6 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 19-04-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 247 262 9.6E-34 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 11 26 9.6E-34 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 97 112 9.6E-34 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 131 144 9.6E-34 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PRINTS PR00958 Homoserine kinase signature 170 187 9.6E-34 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 SUPERFAMILY SSF55060 165 265 4.68E-24 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 Pfam PF00288 GHMP kinases N terminal domain 83 144 4.4E-11 T 19-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PANTHER PTHR20861:SF1 4 263 8.5E-72 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PANTHER PTHR20861 4 263 8.5E-72 T 19-04-2016 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 SUPERFAMILY SSF54211 4 154 1.75E-31 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 TIGRFAM TIGR00191 thrB: homoserine kinase 4 264 1.5E-62 T 19-04-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 PIRSF PIRSF000676 1 267 2.9E-72 T 19-04-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 AMED_7793 2f7189b52af055d631a9a19a7d17d1e2 294 Gene3D G3DSA:3.30.230.10 4 154 1.7E-52 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 Pfam PF00550 Phosphopantetheine attachment site 11 76 3.5E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 PANTHER PTHR20863 6 80 8.0E-13 T 19-04-2016 AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 Gene3D G3DSA:1.10.1200.10 3 79 1.5E-24 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 17.386 T 19-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 37 76 2.0E-12 T 19-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 5 79 1.9E-20 T 19-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 AMED_2100 dfac14a20d8819a06f5a7df1785476fa 81 SUPERFAMILY SSF47336 4 79 4.97E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_9123 e8d750f8e86aa973c78aa99a2d877dcb 138 Pfam PF01850 PIN domain 2 120 4.6E-12 T 19-04-2016 IPR002716 PIN domain AMED_9123 e8d750f8e86aa973c78aa99a2d877dcb 138 SUPERFAMILY SSF88723 1 122 6.73E-12 T 19-04-2016 IPR029060 PIN domain-like AMED_9123 e8d750f8e86aa973c78aa99a2d877dcb 138 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 127 10.052 T 19-04-2016 IPR022907 VapC family GO:0004540 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 Gene3D G3DSA:1.10.10.10 132 225 1.2E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6358 a644efcbdba896a8ed8bee7327188160 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 224 2.3E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 Pfam PF00072 Response regulator receiver domain 9 118 5.8E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 Gene3D G3DSA:3.40.50.2300 9 125 4.4E-36 T 19-04-2016 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 PANTHER PTHR26402 7 228 1.0E-81 T 19-04-2016 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 SMART SM00448 7 118 2.9E-37 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 SUPERFAMILY SSF52172 7 130 1.32E-37 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6358 a644efcbdba896a8ed8bee7327188160 228 PANTHER PTHR26402:SF292 7 228 1.0E-81 T 19-04-2016 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 SMART SM00862 153 225 6.4E-27 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6358 a644efcbdba896a8ed8bee7327188160 228 SUPERFAMILY SSF46894 132 224 5.95E-27 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.25.40.10 694 809 8.4E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF46894 2 87 3.12E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 82 2.4E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 PANTHER PTHR22845 135 602 1.1E-78 T 19-04-2016 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM01043 94 234 2.8E-40 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 892 1003 1.47E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 772 927 7.78E-20 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF13424 Tetratricopeptide repeat 736 804 4.4E-11 T 19-04-2016 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 90 253 1.23E-31 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:3.40.50.300 272 369 8.2E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF52540 261 507 4.5E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SUPERFAMILY SSF48452 682 807 2.7E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.25.40.10 810 1022 4.1E-20 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 PANTHER PTHR22845:SF4 135 602 1.1E-78 T 19-04-2016 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF00931 NB-ARC domain 276 511 1.2E-6 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Gene3D G3DSA:1.10.10.10 23 76 2.7E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 972 1005 500.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 892 925 63.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 772 805 0.53 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 852 885 98.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 692 725 210.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 732 765 2.9 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 184 217 340.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00028 812 845 470.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 Pfam PF03704 Bacterial transcriptional activator domain 95 234 6.7E-36 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1373 854228acf3045a8e255ecc6a77c38fac 1027 SMART SM00862 15 87 2.4E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6630 2c152831f850d140e5efee8590f57760 139 Gene3D G3DSA:3.30.1310.10 17 83 5.9E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_6630 2c152831f850d140e5efee8590f57760 139 Pfam PF02575 YbaB/EbfC DNA-binding family 13 94 3.3E-11 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_6630 2c152831f850d140e5efee8590f57760 139 SUPERFAMILY SSF82607 13 94 6.93E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_7009 2b34a62534047ce895771527d34d7560 232 Gene3D G3DSA:3.40.630.30 100 225 1.1E-14 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7009 2b34a62534047ce895771527d34d7560 232 Pfam PF00583 Acetyltransferase (GNAT) family 151 219 2.0E-8 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7009 2b34a62534047ce895771527d34d7560 232 SUPERFAMILY SSF55729 37 224 6.38E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 Gene3D G3DSA:3.40.50.2300 2 123 1.4E-30 T 19-04-2016 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 SUPERFAMILY SSF52172 2 135 4.27E-29 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 SMART SM00448 3 118 4.3E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 SMART SM00421 152 209 4.1E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 PANTHER PTHR26402 3 215 3.3E-77 T 19-04-2016 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 6.5E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 6.5E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 6.5E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 Pfam PF00072 Response regulator receiver domain 5 118 6.1E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 PANTHER PTHR26402:SF564 3 215 3.3E-77 T 19-04-2016 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 7.3E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 Gene3D G3DSA:1.10.10.10 124 215 3.5E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6192 0b8a1114229066c2eb6e46a648175a0c 216 SUPERFAMILY SSF46894 142 215 3.74E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5067 a52980446d308825ccbb41533002546c 1159 PANTHER PTHR10066 889 921 9.1E-106 T 19-04-2016 AMED_5067 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.320 255 352 2.3E-12 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49265 947 1035 1.64E-14 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5067 a52980446d308825ccbb41533002546c 1159 SMART SM00637 1039 1141 2.3E-4 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49303 703 807 9.35E-15 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 PANTHER PTHR10066 45 833 9.1E-106 T 19-04-2016 AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF51445 350 700 4.07E-52 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5067 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.10 947 1033 3.9E-15 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5067 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.40.290 1038 1140 2.2E-15 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5067 a52980446d308825ccbb41533002546c 1159 SMART SM00060 949 1023 1.3E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5067 a52980446d308825ccbb41533002546c 1159 PANTHER PTHR10066:SF66 889 921 9.1E-106 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_5067 a52980446d308825ccbb41533002546c 1159 Pfam PF00553 Cellulose binding domain 1041 1139 3.2E-9 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49785 45 228 1.59E-29 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49303 791 938 3.67E-21 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:2.60.120.260 45 227 4.1E-21 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5067 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:3.20.20.80 353 585 7.1E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 Gene3D G3DSA:3.20.20.80 634 700 7.1E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 PANTHER PTHR10066:SF66 45 833 9.1E-106 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_5067 a52980446d308825ccbb41533002546c 1159 PANTHER PTHR10066:SF66 849 871 9.1E-106 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_5067 a52980446d308825ccbb41533002546c 1159 Pfam PF00041 Fibronectin type III domain 952 1026 1.6E-5 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5067 a52980446d308825ccbb41533002546c 1159 PANTHER PTHR10066 849 871 9.1E-106 T 19-04-2016 AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49303 236 353 1.37E-16 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 Pfam PF00703 Glycosyl hydrolases family 2 238 353 5.9E-10 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5067 a52980446d308825ccbb41533002546c 1159 SUPERFAMILY SSF49384 1034 1139 1.12E-12 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 5.0E-24 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 Gene3D G3DSA:3.30.360.10 143 321 3.1E-40 T 19-04-2016 AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 SUPERFAMILY SSF55347 128 293 2.29E-33 T 19-04-2016 AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 PANTHER PTHR22604:SF136 2 321 7.8E-91 T 19-04-2016 AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 SUPERFAMILY SSF51735 3 154 7.89E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 PANTHER PTHR22604 2 321 7.8E-91 T 19-04-2016 AMED_1499 c19f421d26d520d1e4d95c79f5793e4b 327 Gene3D G3DSA:3.40.50.720 3 142 1.2E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 SUPERFAMILY SSF47203 220 365 2.74E-33 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 SUPERFAMILY SSF56645 2 217 1.7E-42 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 Gene3D G3DSA:2.40.110.10 122 209 4.1E-13 T 19-04-2016 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 PANTHER PTHR10909:SF302 1 371 2.1E-80 T 19-04-2016 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 Gene3D G3DSA:1.10.540.10 2 116 4.5E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 Gene3D G3DSA:1.20.140.10 210 363 1.1E-35 T 19-04-2016 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 3.9E-16 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 PANTHER PTHR10909 1 371 2.1E-80 T 19-04-2016 AMED_7159 882a9f89fed47be470c98632f4e2aad2 374 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 223 362 2.2E-23 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 Pfam PF12951 Passenger-associated-transport-repeat 475 503 4.9E-12 T 19-04-2016 IPR013425 Autotransporter-associated beta strand repeat AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 SMART SM00014 177 316 0.0025 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 Gene3D G3DSA:2.160.20.20 440 549 3.7E-11 T 19-04-2016 IPR012332 P22 tailspike C-terminal domain-like AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 Gene3D G3DSA:1.20.144.10 171 337 2.5E-45 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 Gene3D G3DSA:1.20.144.10 68 133 2.5E-45 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 Pfam PF01569 PAP2 superfamily 191 318 4.7E-10 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 474 504 2.7E-12 T 19-04-2016 IPR013425 Autotransporter-associated beta strand repeat AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 SUPERFAMILY SSF48317 180 330 1.31E-22 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2370 669a03bd62b12089c02ead058f2ec1ba 615 SUPERFAMILY SSF51126 435 549 2.51E-8 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 81 4.1E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 SMART SM00345 23 81 9.8E-20 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 Gene3D G3DSA:1.10.10.10 6 81 2.9E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 SUPERFAMILY SSF46785 12 101 1.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 Gene3D G3DSA:1.20.120.530 87 221 4.0E-30 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 PANTHER PTHR11751 23 107 8.5E-26 T 19-04-2016 AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 SMART SM00895 91 216 4.0E-15 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 Pfam PF07729 FCD domain 91 215 9.2E-22 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7874 a8f3f359b250890a55bef0f46fbd0066 239 SUPERFAMILY SSF48008 87 221 2.88E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_0958 a044dddad16de17633b4dbab5325999a 332 Gene3D G3DSA:1.10.10.60 227 273 2.3E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0958 a044dddad16de17633b4dbab5325999a 332 SUPERFAMILY SSF52317 10 203 2.4E-44 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_0958 a044dddad16de17633b4dbab5325999a 332 SMART SM00342 237 320 8.0E-27 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_0958 a044dddad16de17633b4dbab5325999a 332 SUPERFAMILY SSF46689 225 271 3.53E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0958 a044dddad16de17633b4dbab5325999a 332 Pfam PF12833 Helix-turn-helix domain 243 321 7.0E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_0958 a044dddad16de17633b4dbab5325999a 332 PANTHER PTHR11019:SF68 8 328 8.6E-108 T 19-04-2016 AMED_0958 a044dddad16de17633b4dbab5325999a 332 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_0958 a044dddad16de17633b4dbab5325999a 332 Gene3D G3DSA:3.40.50.880 11 226 3.4E-48 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_0958 a044dddad16de17633b4dbab5325999a 332 PANTHER PTHR11019 8 328 8.6E-108 T 19-04-2016 AMED_0958 a044dddad16de17633b4dbab5325999a 332 Gene3D G3DSA:1.10.10.60 274 322 6.0E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0958 a044dddad16de17633b4dbab5325999a 332 Pfam PF01965 DJ-1/PfpI family 11 181 7.0E-15 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_0958 a044dddad16de17633b4dbab5325999a 332 SUPERFAMILY SSF46689 274 324 3.47E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 Gene3D G3DSA:3.30.1780.10 6 143 3.2E-36 T 19-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 PANTHER PTHR13812 63 334 5.0E-41 T 19-04-2016 AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 SUPERFAMILY SSF51735 6 334 7.61E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 PANTHER PTHR13812:SF19 63 334 5.0E-41 T 19-04-2016 AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 12 325 1.2E-57 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 PIRSF PIRSF001439 2 335 1.5E-74 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_0430 ada6278242b55a4b3fb3ee18abf9d24e 335 Gene3D G3DSA:3.40.50.720 144 305 1.9E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4920 a333959341ce0c000e76620450323e7d 301 SUPERFAMILY SSF159659 14 266 1.57E-89 T 19-04-2016 AMED_4920 a333959341ce0c000e76620450323e7d 301 Pfam PF09754 PAC2 family 27 245 6.8E-53 T 19-04-2016 IPR019151 Proteasome assembly chaperone 2 AMED_4920 a333959341ce0c000e76620450323e7d 301 PANTHER PTHR42301 21 299 8.9E-149 T 19-04-2016 AMED_4920 a333959341ce0c000e76620450323e7d 301 PIRSF PIRSF028754 5 298 1.0E-109 T 19-04-2016 IPR008492 Protein of unknown function DUF774 AMED_4920 a333959341ce0c000e76620450323e7d 301 PANTHER PTHR42301:SF2 21 299 8.9E-149 T 19-04-2016 AMED_0576 a76b8a4d3280116aa67fac35e14cc125 293 SUPERFAMILY SSF53448 1 283 3.83E-81 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0576 a76b8a4d3280116aa67fac35e14cc125 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 285 1.7E-133 T 19-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 AMED_0576 a76b8a4d3280116aa67fac35e14cc125 293 Gene3D G3DSA:3.90.550.10 1 261 2.6E-60 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0576 a76b8a4d3280116aa67fac35e14cc125 293 PANTHER PTHR22572:SF105 2 261 3.5E-145 T 19-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 AMED_0576 a76b8a4d3280116aa67fac35e14cc125 293 PANTHER PTHR22572 2 261 3.5E-145 T 19-04-2016 AMED_0576 a76b8a4d3280116aa67fac35e14cc125 293 Pfam PF00483 Nucleotidyl transferase 2 237 2.8E-61 T 19-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 AMED_6793 5f46f5c3b5a3a0ed0b23787b9707b24b 238 SUPERFAMILY SSF56784 7 229 6.34E-35 T 19-04-2016 IPR023214 HAD-like domain AMED_6793 5f46f5c3b5a3a0ed0b23787b9707b24b 238 Gene3D G3DSA:3.40.50.1000 80 230 1.5E-29 T 19-04-2016 IPR023214 HAD-like domain AMED_6793 5f46f5c3b5a3a0ed0b23787b9707b24b 238 Pfam PF12710 haloacid dehalogenase-like hydrolase 12 192 8.4E-16 T 19-04-2016 AMED_6793 5f46f5c3b5a3a0ed0b23787b9707b24b 238 PANTHER PTHR18901 8 226 1.2E-34 T 19-04-2016 AMED_6793 5f46f5c3b5a3a0ed0b23787b9707b24b 238 PANTHER PTHR18901:SF27 8 226 1.2E-34 T 19-04-2016 AMED_6831 18600c5e19ac844ae51b0403588bdd72 212 Gene3D G3DSA:3.40.50.1240 2 197 9.1E-42 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6831 18600c5e19ac844ae51b0403588bdd72 212 PANTHER PTHR23029:SF26 2 192 2.0E-54 T 19-04-2016 AMED_6831 18600c5e19ac844ae51b0403588bdd72 212 SUPERFAMILY SSF53254 2 193 5.3E-39 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6831 18600c5e19ac844ae51b0403588bdd72 212 PANTHER PTHR23029 2 192 2.0E-54 T 19-04-2016 AMED_6831 18600c5e19ac844ae51b0403588bdd72 212 SMART SM00855 2 160 3.7E-17 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6831 18600c5e19ac844ae51b0403588bdd72 212 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 197 8.3E-36 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 242 255 - T 19-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 SMART SM00917 431 560 1.4E-34 T 19-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 3 561 55.202 T 19-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 Gene3D G3DSA:3.20.20.70 13 402 2.1E-145 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 PANTHER PTHR10277:SF28 2 345 8.8E-266 T 19-04-2016 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 PANTHER PTHR10277:SF28 366 561 8.8E-266 T 19-04-2016 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 Pfam PF00682 HMGL-like 33 312 1.0E-76 T 19-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 39 55 - T 19-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 2 561 6.0E-266 T 19-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 Pfam PF08502 LeuA allosteric (dimerisation) domain 431 559 1.2E-30 T 19-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 SUPERFAMILY SSF110921 453 559 4.05E-37 T 19-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 SUPERFAMILY SSF89000 397 447 9.42E-14 T 19-04-2016 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 PANTHER PTHR10277 2 345 8.8E-266 T 19-04-2016 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 PANTHER PTHR10277 366 561 8.8E-266 T 19-04-2016 AMED_8886 a30196ca559d602ef3bd454c2315527e 561 SUPERFAMILY SSF51569 21 329 9.34E-96 T 19-04-2016 AMED_7966 4266a01665fedcb679a4f1bd5ef9b418 157 SUPERFAMILY SSF54637 17 155 1.29E-21 T 19-04-2016 IPR029069 HotDog domain AMED_7966 4266a01665fedcb679a4f1bd5ef9b418 157 Pfam PF14539 Domain of unknown function (DUF4442) 19 152 8.2E-56 T 19-04-2016 IPR027961 Protein of unknown function DUF4442 AMED_7966 4266a01665fedcb679a4f1bd5ef9b418 157 Gene3D G3DSA:3.10.129.10 7 155 2.8E-56 T 19-04-2016 IPR029069 HotDog domain AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 139 156 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 27 46 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 63 78 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 252 273 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 104 125 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 231 250 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PRINTS PR00740 Glycosyl hydrolase family 27 signature 166 184 4.6E-65 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 SUPERFAMILY SSF51445 24 296 2.18E-104 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 ProSitePatterns PS00512 Alpha-galactosidase signature. 68 84 - T 19-04-2016 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 Gene3D G3DSA:2.60.40.1180 290 384 8.1E-25 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 Gene3D G3DSA:2.60.40.10 409 483 2.1E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 SUPERFAMILY SSF49785 518 661 1.57E-40 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 Gene3D G3DSA:3.20.20.70 24 289 3.0E-130 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 SUPERFAMILY SSF51011 299 384 8.27E-19 T 19-04-2016 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 Pfam PF16499 Alpha galactosidase A 32 337 8.3E-97 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 Pfam PF08305 NPCBM/NEW2 domain 518 661 4.3E-47 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PANTHER PTHR11452 1 383 5.2E-197 T 19-04-2016 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 416 482 1.8E-8 T 19-04-2016 IPR018905 Alpha-galactosidase, NEW3 domain AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 PANTHER PTHR11452:SF12 1 383 5.2E-197 T 19-04-2016 AMED_0853 bbc63581938f22ad4502ebe9a8fc4de1 663 SMART SM00776 514 662 4.6E-65 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 SUPERFAMILY SSF53092 7 132 5.62E-22 T 19-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 PANTHER PTHR10804:SF109 115 362 1.4E-95 T 19-04-2016 AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 Pfam PF00557 Metallopeptidase family M24 141 345 1.3E-62 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 292 304 - T 19-04-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 Gene3D G3DSA:3.40.350.10 5 132 3.4E-21 T 19-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 PANTHER PTHR10804:SF109 4 16 1.4E-95 T 19-04-2016 AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 PRINTS PR00599 Methionine aminopeptidase-1 signature 216 232 1.8E-5 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 PRINTS PR00599 Methionine aminopeptidase-1 signature 314 326 1.8E-5 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 PANTHER PTHR10804 4 16 1.4E-95 T 19-04-2016 AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 PANTHER PTHR10804 115 362 1.4E-95 T 19-04-2016 AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 134 3.8E-23 T 19-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 Gene3D G3DSA:3.90.230.10 134 360 1.6E-77 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_2740 45a05f169f8425e53ece68a47d7a52c4 362 SUPERFAMILY SSF55920 134 362 6.28E-73 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 7.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 7.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 7.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 258 1.2E-46 T 19-04-2016 AMED_2849 c0053365150da0f4a6f9624800862c16 262 SUPERFAMILY SSF51735 8 260 3.14E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2849 c0053365150da0f4a6f9624800862c16 262 PANTHER PTHR24322 14 142 2.4E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PANTHER PTHR24322 158 190 2.4E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 Gene3D G3DSA:3.40.50.720 7 258 1.1E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2849 c0053365150da0f4a6f9624800862c16 262 PANTHER PTHR24322:SF211 14 142 2.4E-37 T 19-04-2016 AMED_2849 c0053365150da0f4a6f9624800862c16 262 PANTHER PTHR24322:SF211 158 190 2.4E-37 T 19-04-2016 AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.8E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.8E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.8E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 2.8E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.8E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2849 c0053365150da0f4a6f9624800862c16 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.8E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 PANTHER PTHR24362 1 366 3.9E-79 T 19-04-2016 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 Pfam PF00069 Protein kinase domain 7 258 9.5E-46 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 SUPERFAMILY SSF56112 2 270 1.21E-67 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 12 35 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 Gene3D G3DSA:3.30.200.20 2 76 9.6E-22 T 19-04-2016 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 PANTHER PTHR24362:SF160 1 366 3.9E-79 T 19-04-2016 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 SMART SM00220 6 261 1.1E-60 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0912 9ad9427ffd72a463ebd17f324d882c9b 580 Gene3D G3DSA:1.10.510.10 77 258 2.0E-45 T 19-04-2016 AMED_0008 722cbe661867e977fa029de68f0690e3 221 Pfam PF12089 Transmembrane domain of unknown function (DUF3566) 101 219 8.8E-44 T 19-04-2016 IPR021949 Domain of unknown function DUF3566. transmembrane AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 PANTHER PTHR11019:SF53 106 217 4.2E-15 T 19-04-2016 AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 PANTHER PTHR11019 106 217 4.2E-15 T 19-04-2016 AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 SUPERFAMILY SSF46689 178 216 5.38E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 SMART SM00342 130 214 6.5E-12 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 Pfam PF12833 Helix-turn-helix domain 136 216 9.2E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 Gene3D G3DSA:1.10.10.60 113 168 3.6E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7808 dacfb26dc42edccff6dda676f23d5cf9 217 Gene3D G3DSA:1.10.10.60 169 216 2.9E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0465 ffdd15303918a86b66e4b9464591b283 272 SUPERFAMILY SSF54637 7 112 2.63E-9 T 19-04-2016 IPR029069 HotDog domain AMED_0465 ffdd15303918a86b66e4b9464591b283 272 Pfam PF13622 Thioesterase-like superfamily 27 266 2.6E-45 T 19-04-2016 AMED_0465 ffdd15303918a86b66e4b9464591b283 272 Gene3D G3DSA:3.10.129.10 33 113 1.0E-6 T 19-04-2016 IPR029069 HotDog domain AMED_0465 ffdd15303918a86b66e4b9464591b283 272 SUPERFAMILY SSF54637 128 266 7.47E-11 T 19-04-2016 IPR029069 HotDog domain AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 Gene3D G3DSA:1.10.357.10 46 180 9.7E-37 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 PANTHER PTHR30055 2 180 6.4E-30 T 19-04-2016 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 PANTHER PTHR30055:SF10 2 180 6.4E-30 T 19-04-2016 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 SUPERFAMILY SSF46689 2 73 6.14E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 49 1.0E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 49 2.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 5 18 2.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7368 8227ec6ea8ddd9d146eb75bbcf75b2d9 187 Gene3D G3DSA:1.10.10.60 2 45 3.7E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.50.261 469 565 2.2E-8 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.630.30 17 150 1.4E-18 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 SMART SM00881 191 286 3.7E-29 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF52210 477 630 8.37E-26 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.50.261 310 468 4.1E-32 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF55729 17 153 1.89E-20 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF13380 CoA binding domain 196 315 4.0E-23 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Gene3D G3DSA:3.40.50.720 182 309 1.2E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 PANTHER PTHR33303 78 608 3.6E-154 T 19-04-2016 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 PANTHER PTHR33303 627 861 3.6E-154 T 19-04-2016 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF56059 661 861 1.39E-26 T 19-04-2016 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF52210 312 472 7.46E-37 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF00583 Acetyltransferase (GNAT) family 75 148 4.2E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF13549 ATP-grasp domain 653 860 3.7E-52 T 19-04-2016 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 SUPERFAMILY SSF51735 183 317 2.84E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 334 469 3.2E-43 T 19-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 PANTHER PTHR33303:SF3 78 608 3.6E-154 T 19-04-2016 AMED_5470 3122471735efe3b0f92cc88fdcb13832 875 PANTHER PTHR33303:SF3 627 861 3.6E-154 T 19-04-2016 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 SUPERFAMILY SSF54373 293 399 1.31E-30 T 19-04-2016 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 296 315 3.6E-29 T 19-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 5 24 3.6E-29 T 19-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 380 399 3.6E-29 T 19-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 432 449 3.6E-29 T 19-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 200 222 3.6E-29 T 19-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PRINTS PR00757 Flavin-containing amine oxidase signature 401 423 3.6E-29 T 19-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 SUPERFAMILY SSF51905 1 311 3.11E-64 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 SUPERFAMILY SSF51905 412 452 3.11E-64 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PANTHER PTHR10742 2 451 9.4E-112 T 19-04-2016 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 Gene3D G3DSA:3.50.50.60 3 100 1.4E-11 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 Gene3D G3DSA:1.10.405.10 106 192 4.3E-25 T 19-04-2016 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 Pfam PF01593 Flavin containing amine oxidoreductase 13 451 5.3E-65 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 PANTHER PTHR10742:SF216 2 451 9.4E-112 T 19-04-2016 AMED_3481 ad1922ecb0f40519195d9c8b64ab9209 454 Gene3D G3DSA:3.90.660.10 230 401 4.9E-52 T 19-04-2016 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 96 2.9E-19 T 19-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 SUPERFAMILY SSF48179 158 266 4.76E-36 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 159 263 3.6E-37 T 19-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 219 241 - T 19-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 SUPERFAMILY SSF51735 4 157 2.05E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 263 26.766 T 19-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 Gene3D G3DSA:3.40.50.720 4 157 3.5E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 PANTHER PTHR11645 4 270 1.2E-108 T 19-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 PANTHER PTHR11645:SF0 4 270 1.2E-108 T 19-04-2016 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 Gene3D G3DSA:1.10.3730.10 158 263 3.3E-40 T 19-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 PIRSF PIRSF000193 1 266 1.2E-72 T 19-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_0466 45b0969fdf6ece19c0df71f6d356c963 270 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 263 1.4E-80 T 19-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 Gene3D G3DSA:1.10.8.10 32 64 3.6E-6 T 19-04-2016 AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 PANTHER PTHR18895 33 233 4.3E-52 T 19-04-2016 AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 Gene3D G3DSA:3.40.50.150 66 235 2.0E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 PANTHER PTHR18895:SF64 33 233 4.3E-52 T 19-04-2016 AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 TIGRFAM TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific 6 251 6.0E-116 T 19-04-2016 IPR022446 Conserved hypothetical protein CHP03704, protein-(glutamine-N5) methyltransferase AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 34 231 3.9E-40 T 19-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 Pfam PF05175 Methyltransferase small domain 88 168 2.8E-10 T 19-04-2016 IPR007848 Methyltransferase small domain GO:0008168 AMED_4233 d721fa6ae8fc8a514f7d9216008f9ccd 254 SUPERFAMILY SSF53335 42 217 1.1E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 PANTHER PTHR11926:SF16 1 357 5.9E-15 T 19-04-2016 AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 Pfam PF06722 Protein of unknown function (DUF1205) 164 257 3.5E-14 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 PANTHER PTHR11926 1 357 5.9E-15 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 Gene3D G3DSA:3.40.50.2000 207 350 2.1E-31 T 19-04-2016 AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 SUPERFAMILY SSF53756 1 369 3.45E-75 T 19-04-2016 AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 272 341 1.7E-8 T 19-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_5422 ff6a1fd36785314c1e0d1908abfa3cfa 370 Gene3D G3DSA:3.40.50.2000 1 206 3.6E-27 T 19-04-2016 AMED_0358 fea1fa99ec9be3f4584cbabeb4651726 318 SMART SM00943 14 200 3.3E-26 T 19-04-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal AMED_0358 fea1fa99ec9be3f4584cbabeb4651726 318 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 14 199 8.1E-33 T 19-04-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal AMED_0358 fea1fa99ec9be3f4584cbabeb4651726 318 SUPERFAMILY SSF56747 11 190 1.63E-18 T 19-04-2016 AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Gene3D G3DSA:3.90.180.10 1 176 2.5E-49 T 19-04-2016 IPR011032 GroES-like AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Gene3D G3DSA:3.40.50.720 177 290 1.5E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 PANTHER PTHR11695:SF553 13 341 2.1E-119 T 19-04-2016 AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Pfam PF00107 Zinc-binding dehydrogenase 179 303 1.2E-22 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 SMART SM00829 10 339 0.0011 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 SUPERFAMILY SSF50129 2 162 2.28E-48 T 19-04-2016 IPR011032 GroES-like AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 SUPERFAMILY SSF51735 143 309 8.46E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 136 1.9E-32 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_4330 435a1dbcdae54bd0dc2ba52bc2c4b6af 341 PANTHER PTHR11695 13 341 2.1E-119 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Gene3D G3DSA:3.20.20.140 62 337 5.3E-54 T 19-04-2016 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 SUPERFAMILY SSF51338 2 70 6.82E-10 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Gene3D G3DSA:2.30.40.10 338 361 5.5E-5 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Pfam PF01979 Amidohydrolase family 57 377 2.3E-28 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 SUPERFAMILY SSF51556 60 351 2.53E-52 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 PANTHER PTHR11271 3 378 1.6E-37 T 19-04-2016 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 SUPERFAMILY SSF51338 336 386 6.91E-7 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 PANTHER PTHR11271:SF33 3 378 1.6E-37 T 19-04-2016 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Gene3D G3DSA:2.30.40.10 2 61 4.3E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_0901 c3d2dc757a3bcd4f58f65edb6f8c9e9d 388 Gene3D G3DSA:2.30.40.10 362 386 4.3E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_0546 125dc503fc1beefdd77a2128d6de4493 231 Pfam PF07335 Fungal chitosanase of glycosyl hydrolase group 75 85 218 2.2E-24 T 19-04-2016 IPR009939 Fungal chitosanase KEGG: 00520+3.2.1.132 AMED_0546 125dc503fc1beefdd77a2128d6de4493 231 PANTHER PTHR42061 51 212 8.7E-37 T 19-04-2016 AMED_0546 125dc503fc1beefdd77a2128d6de4493 231 PANTHER PTHR42061:SF1 51 212 8.7E-37 T 19-04-2016 AMED_1836 064f4f5a0dc05ea1312ee80879d659d2 343 Gene3D G3DSA:3.40.50.2300 37 153 1.9E-29 T 19-04-2016 AMED_1836 064f4f5a0dc05ea1312ee80879d659d2 343 SUPERFAMILY SSF53822 34 335 1.08E-57 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1836 064f4f5a0dc05ea1312ee80879d659d2 343 PANTHER PTHR32196 37 315 1.1E-31 T 19-04-2016 AMED_1836 064f4f5a0dc05ea1312ee80879d659d2 343 PANTHER PTHR32196:SF9 37 315 1.1E-31 T 19-04-2016 AMED_1836 064f4f5a0dc05ea1312ee80879d659d2 343 Pfam PF13407 Periplasmic binding protein domain 41 298 1.2E-48 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1836 064f4f5a0dc05ea1312ee80879d659d2 343 Gene3D G3DSA:3.40.50.2300 154 335 2.4E-33 T 19-04-2016 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 121 2.1E-32 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 329 9.5E-49 T 19-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 PANTHER PTHR10174 52 346 3.1E-63 T 19-04-2016 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 Gene3D G3DSA:3.40.50.720 3 142 3.6E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 PIRSF PIRSF000148 4 346 9.9E-112 T 19-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 SUPERFAMILY SSF55347 130 330 3.4E-58 T 19-04-2016 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 Gene3D G3DSA:3.30.360.10 143 325 3.3E-68 T 19-04-2016 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 343 3.4E-135 T 19-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 SUPERFAMILY SSF51735 5 157 1.25E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 343 34.872 T 19-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 SMART SM00859 6 121 1.8E-44 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 PANTHER PTHR10174:SF2 52 346 3.1E-63 T 19-04-2016 AMED_8882 f1b7bd63acb0b68507543e553423b5b5 346 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 244 258 - T 19-04-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_9097 21d2312380a1ae94b79208151838236f 165 Pfam PF02566 OsmC-like protein 58 162 1.4E-23 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_9097 21d2312380a1ae94b79208151838236f 165 SUPERFAMILY SSF82784 6 164 1.7E-40 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_9097 21d2312380a1ae94b79208151838236f 165 PANTHER PTHR35368 5 164 1.5E-28 T 19-04-2016 AMED_9097 21d2312380a1ae94b79208151838236f 165 Gene3D G3DSA:3.30.300.20 8 155 3.7E-43 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_9097 21d2312380a1ae94b79208151838236f 165 PANTHER PTHR35368:SF1 5 164 1.5E-28 T 19-04-2016 AMED_2371 a38639aa621731b347157ef6385e6227 441 SMART SM00915 312 440 7.1E-12 T 19-04-2016 IPR001229 Jacalin-like lectin domain AMED_2371 a38639aa621731b347157ef6385e6227 441 SUPERFAMILY SSF56219 30 293 1.83E-40 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_2371 a38639aa621731b347157ef6385e6227 441 PANTHER PTHR33354 238 441 1.8E-68 T 19-04-2016 AMED_2371 a38639aa621731b347157ef6385e6227 441 Gene3D G3DSA:2.100.10.30 301 439 4.6E-26 T 19-04-2016 IPR001229 Jacalin-like lectin domain AMED_2371 a38639aa621731b347157ef6385e6227 441 PANTHER PTHR33354:SF5 238 441 1.8E-68 T 19-04-2016 AMED_2371 a38639aa621731b347157ef6385e6227 441 Pfam PF01419 Jacalin-like lectin domain 351 438 1.9E-6 T 19-04-2016 IPR001229 Jacalin-like lectin domain AMED_2371 a38639aa621731b347157ef6385e6227 441 Gene3D G3DSA:3.60.10.10 151 293 7.6E-4 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_2371 a38639aa621731b347157ef6385e6227 441 SUPERFAMILY SSF51101 304 438 1.44E-24 T 19-04-2016 IPR001229 Jacalin-like lectin domain AMED_2371 a38639aa621731b347157ef6385e6227 441 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 35 286 2.1E-9 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 195 1.3E-46 T 19-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 Gene3D G3DSA:3.90.950.10 2 199 4.7E-77 T 19-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 Pfam PF01725 Ham1 family 4 193 1.4E-51 T 19-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 SUPERFAMILY SSF52972 2 198 7.33E-63 T 19-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 PANTHER PTHR11067:SF9 2 199 4.1E-67 T 19-04-2016 AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 198 47.132 T 19-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 AMED_7703 0fd271f6950771bd5fa6f96490c754fe 200 PANTHER PTHR11067 2 199 4.1E-67 T 19-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 1.2E-13 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PANTHER PTHR23115 1 397 1.6E-244 T 19-04-2016 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 80 90 2.7E-24 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 133 142 2.7E-24 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.7E-24 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 96 107 2.7E-24 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PRINTS PR00315 GTP-binding elongation factor signature 60 68 2.7E-24 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 SUPERFAMILY SSF50447 207 304 2.7E-30 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Gene3D G3DSA:2.40.30.10 214 301 3.4E-36 T 19-04-2016 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Pfam PF03144 Elongation factor Tu domain 2 227 296 6.1E-16 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 59.053 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Pfam PF03143 Elongation factor Tu C-terminal domain 302 395 7.6E-32 T 19-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMED_0675 d262fa3a86eabbc0835fad3698007939 397 SUPERFAMILY SSF52540 6 221 2.39E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Gene3D G3DSA:3.40.50.300 5 213 1.1E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0675 d262fa3a86eabbc0835fad3698007939 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 9.3E-58 T 19-04-2016 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 PANTHER PTHR23115:SF112 1 397 1.6E-244 T 19-04-2016 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 397 1.1E-219 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 Gene3D G3DSA:2.40.30.10 303 396 1.7E-45 T 19-04-2016 AMED_0675 d262fa3a86eabbc0835fad3698007939 397 SUPERFAMILY SSF50465 305 397 2.85E-35 T 19-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 PANTHER PTHR11712 1 404 1.5E-103 T 19-04-2016 AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 SUPERFAMILY SSF53901 206 395 1.56E-57 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 235 1.9E-29 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 Gene3D G3DSA:3.40.47.10 2 248 1.5E-47 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 SMART SM00825 Beta-ketoacyl synthase 6 398 1.1E-12 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 Gene3D G3DSA:3.40.47.10 252 397 1.6E-47 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 SUPERFAMILY SSF53901 1 240 3.14E-45 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4044 80fc1b8de515c1dc331e41455faaa6e9 404 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 243 352 8.8E-31 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0789 367ac6862191db63f76968b5db2ab2a9 301 Pfam PF00892 EamA-like transporter family 12 139 1.2E-15 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_0789 367ac6862191db63f76968b5db2ab2a9 301 Pfam PF00892 EamA-like transporter family 150 285 1.3E-18 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_0789 367ac6862191db63f76968b5db2ab2a9 301 SUPERFAMILY SSF103481 191 290 4.05E-14 T 19-04-2016 AMED_0789 367ac6862191db63f76968b5db2ab2a9 301 PANTHER PTHR12715 5 300 1.0E-59 T 19-04-2016 AMED_0789 367ac6862191db63f76968b5db2ab2a9 301 SUPERFAMILY SSF103481 40 142 5.36E-10 T 19-04-2016 AMED_0789 367ac6862191db63f76968b5db2ab2a9 301 PANTHER PTHR12715:SF17 5 300 1.0E-59 T 19-04-2016 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:3.20.20.140 50 293 4.3E-43 T 19-04-2016 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 SUPERFAMILY SSF51338 2 48 5.64E-11 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 SUPERFAMILY SSF51338 309 340 5.64E-11 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 PANTHER PTHR11271 1 335 1.2E-21 T 19-04-2016 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:2.30.40.10 294 320 1.1E-4 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 SUPERFAMILY SSF51556 47 308 1.79E-42 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:2.30.40.10 2 49 9.3E-16 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 Gene3D G3DSA:2.30.40.10 321 344 9.3E-16 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 Pfam PF01979 Amidohydrolase family 44 343 6.1E-18 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_6429 56e6bfaf464dba55fbc1b762d7394df0 346 PANTHER PTHR11271:SF33 1 335 1.2E-21 T 19-04-2016 AMED_1889 3270b70971042887378aaea375fb1a48 345 PANTHER PTHR30146 3 342 1.8E-105 T 19-04-2016 AMED_1889 3270b70971042887378aaea375fb1a48 345 SMART SM00354 3 73 9.4E-22 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1889 3270b70971042887378aaea375fb1a48 345 Pfam PF13377 Periplasmic binding protein-like domain 169 329 7.4E-41 T 19-04-2016 AMED_1889 3270b70971042887378aaea375fb1a48 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 49 7.4E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1889 3270b70971042887378aaea375fb1a48 345 Gene3D G3DSA:3.40.50.2300 175 310 4.2E-45 T 19-04-2016 AMED_1889 3270b70971042887378aaea375fb1a48 345 SUPERFAMILY SSF47413 3 61 3.7E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1889 3270b70971042887378aaea375fb1a48 345 Gene3D G3DSA:3.40.50.2300 56 174 7.1E-36 T 19-04-2016 AMED_1889 3270b70971042887378aaea375fb1a48 345 Gene3D G3DSA:1.10.260.40 4 55 5.6E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1889 3270b70971042887378aaea375fb1a48 345 SUPERFAMILY SSF53822 64 331 2.72E-66 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_0112 179dc4a597ba029d00bd9f1ec2189312 277 Gene3D G3DSA:1.10.260.40 10 88 1.5E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0112 179dc4a597ba029d00bd9f1ec2189312 277 SUPERFAMILY SSF47413 26 88 1.56E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0112 179dc4a597ba029d00bd9f1ec2189312 277 SMART SM00530 17 89 1.2E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0112 179dc4a597ba029d00bd9f1ec2189312 277 PANTHER PTHR35010 1 272 1.8E-114 T 19-04-2016 AMED_0112 179dc4a597ba029d00bd9f1ec2189312 277 Pfam PF13560 Helix-turn-helix domain 13 92 1.1E-17 T 19-04-2016 AMED_0112 179dc4a597ba029d00bd9f1ec2189312 277 PANTHER PTHR35010:SF3 1 272 1.8E-114 T 19-04-2016 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 403 1.4E-135 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 PIRSF PIRSF000429 1 406 2.1E-126 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 Gene3D G3DSA:3.40.47.10 4 125 2.9E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 Gene3D G3DSA:3.40.47.10 210 288 2.9E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 PANTHER PTHR18919 1 406 7.4E-180 T 19-04-2016 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 Pfam PF00108 Thiolase, N-terminal domain 5 274 2.5E-56 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 ProSitePatterns PS00737 Thiolases signature 2. 351 367 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 SUPERFAMILY SSF53901 3 282 7.27E-65 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 Pfam PF02803 Thiolase, C-terminal domain 282 404 6.2E-48 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 SUPERFAMILY SSF53901 283 404 4.25E-43 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 PANTHER PTHR18919:SF69 1 406 7.4E-180 T 19-04-2016 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 Gene3D G3DSA:3.40.47.10 289 404 2.1E-57 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8108 4ec35cf7e7853a4e52f9a745b76cad6e 406 Gene3D G3DSA:3.40.47.10 170 209 2.1E-57 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1507 bff97efeaebf969d6ae7919538997c75 299 PANTHER PTHR24220 8 222 2.1E-83 T 19-04-2016 AMED_1507 bff97efeaebf969d6ae7919538997c75 299 PANTHER PTHR24220 294 299 2.1E-83 T 19-04-2016 AMED_1507 bff97efeaebf969d6ae7919538997c75 299 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1507 bff97efeaebf969d6ae7919538997c75 299 PANTHER PTHR24220:SF364 8 222 2.1E-83 T 19-04-2016 AMED_1507 bff97efeaebf969d6ae7919538997c75 299 PANTHER PTHR24220:SF364 294 299 2.1E-83 T 19-04-2016 AMED_1507 bff97efeaebf969d6ae7919538997c75 299 SMART SM00382 31 207 3.3E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1507 bff97efeaebf969d6ae7919538997c75 299 Gene3D G3DSA:3.40.50.300 5 219 1.7E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1507 bff97efeaebf969d6ae7919538997c75 299 SUPERFAMILY SSF52540 4 221 2.8E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1507 bff97efeaebf969d6ae7919538997c75 299 Pfam PF00005 ABC transporter 24 159 1.8E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SUPERFAMILY SSF51126 188 539 6.43E-36 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 Pfam PF12708 Pectate lyase superfamily protein 207 433 5.7E-14 T 19-04-2016 IPR024535 Pectate lyase superfamily protein AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 355 377 990.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 379 401 230.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 499 521 1400.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 524 546 2200.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 332 353 4500.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SMART SM00710 430 454 18.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 SUPERFAMILY SSF49785 620 743 8.51E-22 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 Gene3D G3DSA:2.160.20.10 188 567 9.3E-38 T 19-04-2016 IPR012334 Pectin lyase fold AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 Pfam PF00754 F5/8 type C domain 627 739 5.0E-11 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_6911 74074cb5a715eeef9b03340fd729aadc 745 Gene3D G3DSA:2.60.120.260 615 744 1.8E-27 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2972 a0e5326222d9c1c5e2692a18daf2b9ea 333 Gene3D G3DSA:1.10.10.10 4 48 3.5E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2972 a0e5326222d9c1c5e2692a18daf2b9ea 333 Pfam PF13404 AsnC-type helix-turn-helix domain 5 44 2.2E-6 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0880 a4666693e90bce853ec3a2c06dda364b 288 PANTHER PTHR11699 1 256 5.7E-79 T 19-04-2016 AMED_0880 a4666693e90bce853ec3a2c06dda364b 288 SUPERFAMILY SSF53720 7 254 6.54E-42 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0880 a4666693e90bce853ec3a2c06dda364b 288 Pfam PF00171 Aldehyde dehydrogenase family 29 255 1.1E-37 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_0880 a4666693e90bce853ec3a2c06dda364b 288 PANTHER PTHR11699:SF165 1 256 5.7E-79 T 19-04-2016 AMED_0880 a4666693e90bce853ec3a2c06dda364b 288 Gene3D G3DSA:3.40.605.10 7 255 3.4E-51 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 1.3E-15 T 19-04-2016 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.3E-15 T 19-04-2016 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 140 155 1.3E-15 T 19-04-2016 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 Pfam PF01494 FAD binding domain 2 159 5.2E-11 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 Gene3D G3DSA:3.50.50.60 269 352 5.2E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 Gene3D G3DSA:3.50.50.60 2 166 5.2E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 PANTHER PTHR13789:SF174 1 366 8.4E-106 T 19-04-2016 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 SUPERFAMILY SSF51905 2 161 1.08E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 SUPERFAMILY SSF51905 278 361 1.08E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2379 d003510ec76911ef32c72815045a0ecf 369 PANTHER PTHR13789 1 366 8.4E-106 T 19-04-2016 AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 SUPERFAMILY SSF51735 200 441 3.93E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 205 381 7.5E-6 T 19-04-2016 AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 Gene3D G3DSA:3.40.50.720 199 440 1.1E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 337 365 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PANTHER PTHR24322:SF438 350 382 3.4E-45 T 19-04-2016 AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PANTHER PTHR24322:SF438 209 334 3.4E-45 T 19-04-2016 AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 223 3.1E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 404 424 3.1E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 350 369 3.1E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 371 388 3.1E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 277 288 3.1E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 324 340 3.1E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PANTHER PTHR24322 350 382 3.4E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PANTHER PTHR24322 209 334 3.4E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 211 437 1.4E-45 T 19-04-2016 AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 369 2.2E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 330 338 2.2E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9233 565a92bb52e9bf45f405c68c944e7231 444 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 277 288 2.2E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 6.8E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 6.8E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 PANTHER PTHR30055:SF91 6 188 5.7E-30 T 19-04-2016 AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 PANTHER PTHR30055 6 188 5.7E-30 T 19-04-2016 AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 SUPERFAMILY SSF46689 9 90 4.29E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 1.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7557 55d2cea06bcbbc95b1459e7b0ad8679b 192 Gene3D G3DSA:1.10.357.10 18 189 2.5E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF13745 HxxPF-repeated domain 336 428 1.3E-25 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00501 AMP-binding enzyme 483 862 1.8E-86 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF47336 961 1033 5.76E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:1.10.1200.10 973 1037 2.2E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF56801 442 979 3.14E-142 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 504 886 8.8E-119 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF13193 AMP-binding enzyme C-terminal domain 870 940 3.9E-6 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00668 Condensation domain 3 117 2.2E-18 T 19-04-2016 IPR001242 Condensation domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00668 Condensation domain 137 314 1.2E-45 T 19-04-2016 IPR001242 Condensation domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00975 Thioesterase domain 1055 1270 1.4E-24 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF52777 5 194 6.0E-44 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.40.50.980 479 616 3.1E-42 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 ProSitePatterns PS00455 Putative AMP-binding domain signature. 607 618 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.40.50.980 617 775 4.4E-33 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF52777 203 446 8.89E-59 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SMART SM00824 Thioesterase 1057 1272 4.7E-7 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.30.300.30 857 972 4.1E-28 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.40.50.1820 1207 1273 3.2E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:3.40.50.1820 1040 1156 3.2E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Pfam PF00550 Phosphopantetheine attachment site 970 1033 1.3E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 PANTHER PTHR24095:SF137 134 1037 4.9E-278 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 PANTHER PTHR24095:SF137 4 116 4.9E-278 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 Gene3D G3DSA:2.30.38.10 776 851 5.4E-29 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 PANTHER PTHR24095 134 1037 4.9E-278 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 PANTHER PTHR24095 4 116 4.9E-278 T 19-04-2016 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SMART SM00823 Phosphopantetheine attachment site 968 1037 3.2E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3963 0ded6abddb9396bef2950a0e0df7b3f5 1275 SUPERFAMILY SSF53474 1034 1272 3.24E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SUPERFAMILY SSF51126 175 485 5.03E-28 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00637 38 135 1.9E-29 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 279 301 240.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 303 331 900.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 373 409 5700.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SMART SM00710 257 278 1400.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 Gene3D G3DSA:2.60.40.290 37 137 5.0E-28 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 Pfam PF13229 Right handed beta helix region 251 394 1.1E-4 T 19-04-2016 AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 Gene3D G3DSA:2.160.20.10 162 483 5.8E-28 T 19-04-2016 IPR012334 Pectin lyase fold AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 SUPERFAMILY SSF49384 34 137 3.77E-25 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_4392 ac80e26c1ad86a0af36a0fab098fd1c1 493 Pfam PF00553 Cellulose binding domain 40 135 1.8E-24 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 PANTHER PTHR30346 1 292 3.3E-69 T 19-04-2016 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 Gene3D G3DSA:3.40.190.10 91 178 1.7E-16 T 19-04-2016 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 SUPERFAMILY SSF53850 89 294 1.09E-39 T 19-04-2016 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 Pfam PF03466 LysR substrate binding domain 87 292 6.2E-41 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 Gene3D G3DSA:1.10.10.10 2 85 2.2E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 SUPERFAMILY SSF46785 2 111 2.29E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.2E-20 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 Gene3D G3DSA:3.40.190.10 179 261 3.1E-23 T 19-04-2016 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.5E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.5E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3673 75e0ea9e3d417ed4536b7fab3703f201 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.5E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6328 ee9b52d4852fc6140e86049c5cc04629 329 Pfam PF02272 DHHA1 domain 263 319 4.0E-6 T 19-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 AMED_6328 ee9b52d4852fc6140e86049c5cc04629 329 SUPERFAMILY SSF64182 22 323 2.09E-54 T 19-04-2016 AMED_6328 ee9b52d4852fc6140e86049c5cc04629 329 Pfam PF01368 DHH family 22 164 7.0E-13 T 19-04-2016 IPR001667 DDH domain AMED_6328 ee9b52d4852fc6140e86049c5cc04629 329 Gene3D G3DSA:3.90.1640.10 22 200 1.9E-28 T 19-04-2016 AMED_5742 fd175a8ed3a49db7c14d9cb10cfae55f 91 PANTHER PTHR10668 12 71 4.2E-15 T 19-04-2016 AMED_5742 fd175a8ed3a49db7c14d9cb10cfae55f 91 PANTHER PTHR10668:SF74 12 71 4.2E-15 T 19-04-2016 AMED_5742 fd175a8ed3a49db7c14d9cb10cfae55f 91 SUPERFAMILY SSF51905 5 66 2.46E-5 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5742 fd175a8ed3a49db7c14d9cb10cfae55f 91 Gene3D G3DSA:3.50.50.60 5 70 1.1E-5 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 SUPERFAMILY SSF56300 5 129 4.1E-23 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 SUPERFAMILY SSF56300 171 249 4.1E-23 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 PANTHER PTHR36492:SF1 2 274 2.3E-125 T 19-04-2016 AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 Gene3D G3DSA:3.60.21.10 4 78 7.5E-23 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 Gene3D G3DSA:3.60.21.10 174 257 7.5E-23 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 Pfam PF00149 Calcineurin-like phosphoesterase 6 239 1.1E-12 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_4923 257ed59acf8a98ec5125a6aefb64c16f 277 PANTHER PTHR36492 2 274 2.3E-125 T 19-04-2016 AMED_8908 216eff1fe6eda8a6b168b71d0c399200 339 SUPERFAMILY SSF53448 7 237 1.41E-33 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8908 216eff1fe6eda8a6b168b71d0c399200 339 PANTHER PTHR22916:SF17 2 132 1.9E-23 T 19-04-2016 AMED_8908 216eff1fe6eda8a6b168b71d0c399200 339 Pfam PF00535 Glycosyl transferase family 2 11 178 3.4E-21 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_8908 216eff1fe6eda8a6b168b71d0c399200 339 PANTHER PTHR22916 2 132 1.9E-23 T 19-04-2016 AMED_8908 216eff1fe6eda8a6b168b71d0c399200 339 Gene3D G3DSA:3.90.550.10 8 139 5.8E-26 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 SUPERFAMILY SSF56808 6 225 3.79E-80 T 19-04-2016 IPR023674 Ribosomal protein L1-like AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 225 1.5E-100 T 19-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 19-04-2016 IPR023673 Ribosomal protein L1, conserved site AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 PANTHER PTHR23105:SF5 21 226 3.0E-76 T 19-04-2016 AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 Gene3D G3DSA:3.40.50.790 69 159 2.2E-40 T 19-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 4.1E-50 T 19-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 Gene3D G3DSA:3.30.190.20 17 68 7.2E-45 T 19-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 Gene3D G3DSA:3.30.190.20 161 225 7.2E-45 T 19-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 PIRSF PIRSF002155 1 226 3.7E-73 T 19-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 PANTHER PTHR23105 21 226 3.0E-76 T 19-04-2016 AMED_0596 dfa36b6ee81b32d298f0627ee687b3f7 239 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.86 T 19-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 PANTHER PTHR30055:SF91 9 191 2.5E-41 T 19-04-2016 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 SUPERFAMILY SSF46689 13 96 3.85E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 67 3.4E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 6.8E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 6.8E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 PANTHER PTHR30055 9 191 2.5E-41 T 19-04-2016 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 Gene3D G3DSA:1.10.357.10 22 190 1.2E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6218 83a4bf3866489176fc80e830aefda1b0 207 SUPERFAMILY SSF48498 94 191 9.78E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6651 374dc62d0af528132369bbef47715614 136 Gene3D G3DSA:3.10.450.50 2 135 3.7E-43 T 19-04-2016 IPR032710 NTF2-like domain AMED_6651 374dc62d0af528132369bbef47715614 136 Pfam PF14534 Domain of unknown function (DUF4440) 9 123 7.5E-11 T 19-04-2016 IPR027843 Domain of unknown function DUF4440 AMED_6651 374dc62d0af528132369bbef47715614 136 SUPERFAMILY SSF54427 1 136 7.67E-33 T 19-04-2016 IPR032710 NTF2-like domain AMED_6651 374dc62d0af528132369bbef47715614 136 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 5 131 2.0E-28 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_3451 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 Gene3D G3DSA:3.40.50.720 2 218 7.8E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3451 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 Pfam PF13460 NAD(P)H-binding 6 110 2.0E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3451 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 PANTHER PTHR14194 2 284 1.5E-71 T 19-04-2016 AMED_3451 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 SUPERFAMILY SSF51735 2 256 8.73E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3451 84fd116b2bf2d4f975f3b8fd8f2cf36c 284 PANTHER PTHR14194:SF73 2 284 1.5E-71 T 19-04-2016 AMED_6222 87c719149957415e90de9caacda10356 261 Pfam PF13185 GAF domain 40 183 1.3E-10 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6222 87c719149957415e90de9caacda10356 261 Pfam PF03861 ANTAR domain 197 248 4.9E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6222 87c719149957415e90de9caacda10356 261 SUPERFAMILY SSF52172 175 249 1.14E-9 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6222 87c719149957415e90de9caacda10356 261 Gene3D G3DSA:3.30.450.40 27 195 2.1E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_6222 87c719149957415e90de9caacda10356 261 Gene3D G3DSA:1.10.10.10 198 249 3.6E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6222 87c719149957415e90de9caacda10356 261 SMART SM00065 40 193 8.7E-4 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6222 87c719149957415e90de9caacda10356 261 PIRSF PIRSF036625 8 257 1.6E-57 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_6222 87c719149957415e90de9caacda10356 261 SMART SM01012 195 250 2.3E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6222 87c719149957415e90de9caacda10356 261 SUPERFAMILY SSF55781 42 191 7.41E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_4661 6a46697bef23c71a257708d32c55313b 299 SUPERFAMILY SSF141986 141 289 1.07E-35 T 19-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain AMED_4661 6a46697bef23c71a257708d32c55313b 299 PANTHER PTHR30237:SF2 1 299 1.0E-82 T 19-04-2016 AMED_4661 6a46697bef23c71a257708d32c55313b 299 PIRSF PIRSF028757 1 297 1.4E-64 T 19-04-2016 IPR003507 Peptidase family S66 AMED_4661 6a46697bef23c71a257708d32c55313b 299 Gene3D G3DSA:3.50.30.60 166 292 2.2E-35 T 19-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain AMED_4661 6a46697bef23c71a257708d32c55313b 299 Gene3D G3DSA:3.40.50.10740 2 160 1.4E-43 T 19-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain AMED_4661 6a46697bef23c71a257708d32c55313b 299 SUPERFAMILY SSF52317 2 159 1.83E-38 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_4661 6a46697bef23c71a257708d32c55313b 299 PANTHER PTHR30237 1 299 1.0E-82 T 19-04-2016 AMED_4661 6a46697bef23c71a257708d32c55313b 299 Pfam PF02016 LD-carboxypeptidase 13 284 1.7E-64 T 19-04-2016 IPR003507 Peptidase family S66 AMED_0308 1ad9665958632cde57e5c8726f4ad29b 655 Pfam PF13515 Fusaric acid resistance protein-like 353 474 8.4E-21 T 19-04-2016 AMED_0308 1ad9665958632cde57e5c8726f4ad29b 655 PANTHER PTHR30509 3 611 1.8E-31 T 19-04-2016 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 Gene3D G3DSA:3.40.50.300 396 631 1.2E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 SUPERFAMILY SSF52540 389 638 1.98E-78 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 Pfam PF00005 ABC transporter 414 568 1.3E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 ProSitePatterns PS00211 ABC transporters family signature. 540 554 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 Pfam PF00664 ABC transporter transmembrane region 74 349 7.6E-8 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 PANTHER PTHR24221:SF157 58 647 1.0E-173 T 19-04-2016 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 SMART SM00382 423 620 5.4E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 Gene3D G3DSA:1.20.1560.10 71 378 1.2E-25 T 19-04-2016 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 SUPERFAMILY SSF90123 60 360 2.62E-32 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_9220 33f06d2cd57117a8048aa323cb1a93ae 648 PANTHER PTHR24221 58 647 1.0E-173 T 19-04-2016 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 PANTHER PTHR30204 1 137 2.7E-20 T 19-04-2016 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 SUPERFAMILY SSF46955 5 108 3.04E-23 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_2912 20d86500fbc597efbfb0656593a15dad 328 SMART SM00422 5 74 1.4E-19 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 1.8E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 1.8E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 1.8E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 Gene3D G3DSA:1.10.1660.10 5 111 4.2E-26 T 19-04-2016 AMED_2912 20d86500fbc597efbfb0656593a15dad 328 Pfam PF13411 MerR HTH family regulatory protein 5 73 1.2E-16 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 PANTHER PTHR21091:SF2 28 356 7.3E-119 T 19-04-2016 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 154 170 - T 19-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 24 355 5.9E-122 T 19-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 21 356 45.43 T 19-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 PANTHER PTHR21091 28 356 7.3E-119 T 19-04-2016 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 Gene3D G3DSA:3.20.20.210 17 356 2.5E-147 T 19-04-2016 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 37 46 - T 19-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 SUPERFAMILY SSF51726 21 356 1.15E-107 T 19-04-2016 AMED_2643 7c97e2ce032fa926844a53498a7e7f20 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 22 355 4.9E-128 T 19-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 SMART SM00422 3 72 6.6E-21 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 9.0E-6 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 9.0E-6 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 9.0E-6 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 Gene3D G3DSA:1.10.1660.10 3 117 2.8E-32 T 19-04-2016 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 Pfam PF13411 MerR HTH family regulatory protein 3 69 2.8E-16 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 PANTHER PTHR30204 1 120 1.6E-41 T 19-04-2016 AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 SUPERFAMILY SSF46955 3 114 3.22E-29 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_0890 87985de22a83ff0a3164dd3b00250e4e 133 PANTHER PTHR30204:SF2 1 120 1.6E-41 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 SUPERFAMILY SSF47336 489 553 3.27E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 127 138 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Gene3D G3DSA:3.40.50.980 137 295 3.5E-34 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 11 404 4.3E-118 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Gene3D G3DSA:1.10.1200.10 492 553 2.0E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Pfam PF00550 Phosphopantetheine attachment site 492 552 1.0E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Gene3D G3DSA:3.40.50.980 7 136 1.4E-34 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 ProSitePatterns PS00012 Phosphopantetheine attachment site. 512 527 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 PANTHER PTHR24095:SF137 3 553 7.1E-141 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Gene3D G3DSA:2.30.38.10 296 371 1.2E-25 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Pfam PF00501 AMP-binding enzyme 6 382 1.4E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 Gene3D G3DSA:3.30.300.30 376 475 5.3E-21 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 SUPERFAMILY SSF56801 7 476 1.31E-120 T 19-04-2016 AMED_3685 14bfe40728c36c8ff94a45dffce6ad36 561 PANTHER PTHR24095 3 553 7.1E-141 T 19-04-2016 AMED_4718 b0f891e277679bf7f8d791d261bf8017 171 Pfam PF13420 Acetyltransferase (GNAT) domain 2 152 5.1E-24 T 19-04-2016 AMED_4718 b0f891e277679bf7f8d791d261bf8017 171 SUPERFAMILY SSF55729 1 158 7.2E-28 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4718 b0f891e277679bf7f8d791d261bf8017 171 PANTHER PTHR23091 1 157 1.8E-21 T 19-04-2016 AMED_4718 b0f891e277679bf7f8d791d261bf8017 171 PANTHER PTHR23091:SF247 1 157 1.8E-21 T 19-04-2016 AMED_4718 b0f891e277679bf7f8d791d261bf8017 171 Gene3D G3DSA:3.40.630.30 1 158 1.1E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1922 56466e11dac9771c745e4003417bc0d6 753 PANTHER PTHR11908:SF95 575 750 1.1E-212 T 19-04-2016 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 PANTHER PTHR11908:SF95 9 558 1.1E-212 T 19-04-2016 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 SMART SM01008 29 135 3.7E-44 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 170 695 1.7E-138 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 SUPERFAMILY SSF56003 127 750 1.28E-151 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 TIGRFAM TIGR03196 pucD: xanthine dehydrogenase D subunit 15 750 1.6E-245 T 19-04-2016 IPR017609 Xanthine dehydrogenase D subunit KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|UniPathway: UPA00604|UniPathway: UPA00604 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 187 278 7.6E-27 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 463 623 3.5E-26 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 357 458 3.6E-58 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 624 750 3.6E-58 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.90.1170.50 9 123 3.2E-39 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1922 56466e11dac9771c745e4003417bc0d6 753 SUPERFAMILY SSF54665 10 154 1.31E-40 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 281 355 6.0E-39 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Gene3D G3DSA:3.30.365.10 124 185 6.0E-39 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 PANTHER PTHR11908 575 750 1.1E-212 T 19-04-2016 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 PANTHER PTHR11908 9 558 1.1E-212 T 19-04-2016 AMED_1922 56466e11dac9771c745e4003417bc0d6 753 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 30 135 1.9E-29 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_6491 ae0600773aca009cf5724eb76f20cd5b 443 SMART SM00387 337 434 0.0012 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6491 ae0600773aca009cf5724eb76f20cd5b 443 Pfam PF07730 Histidine kinase 229 294 5.0E-17 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6491 ae0600773aca009cf5724eb76f20cd5b 443 PANTHER PTHR24421:SF26 98 440 3.4E-97 T 19-04-2016 AMED_6491 ae0600773aca009cf5724eb76f20cd5b 443 Gene3D G3DSA:3.30.565.10 335 432 2.3E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6491 ae0600773aca009cf5724eb76f20cd5b 443 SUPERFAMILY SSF55874 317 432 3.29E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6491 ae0600773aca009cf5724eb76f20cd5b 443 PANTHER PTHR24421 98 440 3.4E-97 T 19-04-2016 AMED_1582 3f1eade6252d8c72fe4d1ba859f6f3f5 156 Pfam PF02627 Carboxymuconolactone decarboxylase family 14 99 7.9E-18 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_1582 3f1eade6252d8c72fe4d1ba859f6f3f5 156 SUPERFAMILY SSF69118 12 151 7.71E-39 T 19-04-2016 IPR029032 AhpD-like AMED_1582 3f1eade6252d8c72fe4d1ba859f6f3f5 156 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 35 81 2.6E-15 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_1582 3f1eade6252d8c72fe4d1ba859f6f3f5 156 Gene3D G3DSA:1.20.1290.10 13 152 4.2E-45 T 19-04-2016 IPR029032 AhpD-like AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 15 45 2.3E-13 T 19-04-2016 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 Gene3D G3DSA:2.60.130.10 18 239 4.7E-78 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 PANTHER PTHR33711 20 245 3.0E-98 T 19-04-2016 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 20 239 3.3E-108 T 19-04-2016 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 82 110 - T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 Pfam PF00775 Dioxygenase 50 231 1.5E-53 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 PANTHER PTHR33711:SF1 20 245 3.0E-98 T 19-04-2016 AMED_1860 3cf3c9bb9da7a84a64d5c7eef33d090b 245 SUPERFAMILY SSF49482 16 239 1.96E-73 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 Pfam PF00042 Globin 6 98 2.8E-10 T 19-04-2016 IPR000971 Globin GO:0019825|GO:0020037 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 Gene3D G3DSA:2.40.30.10 141 236 1.0E-23 T 19-04-2016 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 Gene3D G3DSA:1.10.490.10 5 135 1.1E-35 T 19-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 SUPERFAMILY SSF63380 141 235 1.31E-23 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 PANTHER PTHR22924:SF2 5 367 3.7E-59 T 19-04-2016 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 SUPERFAMILY SSF46458 6 131 1.58E-32 T 19-04-2016 IPR009050 Globin-like AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 PANTHER PTHR22924 5 367 3.7E-59 T 19-04-2016 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 Pfam PF00970 Oxidoreductase FAD-binding domain 143 235 1.9E-14 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 SUPERFAMILY SSF52343 239 368 3.8E-27 T 19-04-2016 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 246 265 1.1E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 168 178 1.1E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00410 Phenol hydroxylase reductase family signature 168 180 2.7E-9 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 PRINTS PR00410 Phenol hydroxylase reductase family signature 246 265 2.7E-9 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 Pfam PF00175 Oxidoreductase NAD-binding domain 247 348 2.6E-15 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_9158 d5b88081e488c91367cdfef3fc48db60 370 Gene3D G3DSA:3.40.50.80 239 368 4.2E-29 T 19-04-2016 AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Gene3D G3DSA:3.90.180.10 1 144 8.2E-48 T 19-04-2016 IPR011032 GroES-like AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 87 1.0E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 PANTHER PTHR11695:SF610 15 321 1.4E-143 T 19-04-2016 AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 SUPERFAMILY SSF51735 112 285 1.32E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Gene3D G3DSA:3.40.50.720 145 257 2.3E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 SUPERFAMILY SSF50129 1 138 4.26E-38 T 19-04-2016 IPR011032 GroES-like AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 SMART SM00829 10 321 2.0E-35 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 PANTHER PTHR11695 15 321 1.4E-143 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 322 2.2E-135 T 19-04-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_0243 5d5fd3eab0ab2ff026f204d2589e4f9d 325 Pfam PF00107 Zinc-binding dehydrogenase 151 258 3.0E-25 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_8017 9a2fef169e4fde7b0cf3a6763633b000 110 Pfam PF06262 Zinicin-like metallopeptidase 18 107 4.4E-11 T 19-04-2016 IPR010428 Zinicin-like metallopeptidase AMED_8017 9a2fef169e4fde7b0cf3a6763633b000 110 SUPERFAMILY SSF55486 1 108 1.39E-21 T 19-04-2016 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 PANTHER PTHR18804 2 37 3.9E-15 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.29 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 SUPERFAMILY SSF57840 2 37 2.49E-15 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 Pfam PF00444 Ribosomal protein L36 2 37 1.7E-16 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 2 37 6.6E-21 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 4.0E-9 T 19-04-2016 AMED_0703 ff79f83b021323d29e6d799d0b482bf8 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 4.6E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 4.6E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 4.6E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 4.6E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 Gene3D G3DSA:3.40.50.1820 7 264 9.1E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 PANTHER PTHR10992 6 266 1.5E-35 T 19-04-2016 AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 TIGRFAM TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase 9 266 5.5E-77 T 19-04-2016 IPR011942 Poly(3-hydroxyalkanoate) depolymerase KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 SUPERFAMILY SSF53474 4 264 5.78E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6471 c97ec408b600d6643525ec9a9d3444bf 271 Pfam PF00561 alpha/beta hydrolase fold 23 252 8.8E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 Gene3D G3DSA:3.40.250.10 149 275 6.3E-36 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 Pfam PF00581 Rhodanese-like domain 149 266 4.8E-18 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 Pfam PF00581 Rhodanese-like domain 9 118 4.6E-15 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 ProSitePatterns PS00683 Rhodanese C-terminal signature. 255 265 - T 19-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 PANTHER PTHR11364:SF10 1 277 2.9E-165 T 19-04-2016 AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 SUPERFAMILY SSF52821 4 137 4.06E-34 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 SMART SM00450 8 122 7.9E-21 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 SMART SM00450 144 271 3.6E-20 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 Gene3D G3DSA:3.40.250.10 4 138 1.0E-37 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 SUPERFAMILY SSF52821 149 276 5.89E-35 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_9012 dbc1f0700103b948255fa89b4c5d0174 278 PANTHER PTHR11364 1 277 2.9E-165 T 19-04-2016 AMED_2941 57f263730b912ea2ceb65fb8518bb624 297 Gene3D G3DSA:3.40.50.2300 18 135 1.5E-23 T 19-04-2016 AMED_2941 57f263730b912ea2ceb65fb8518bb624 297 Pfam PF13377 Periplasmic binding protein-like domain 130 291 4.7E-25 T 19-04-2016 AMED_2941 57f263730b912ea2ceb65fb8518bb624 297 Gene3D G3DSA:3.40.50.2300 136 270 2.1E-21 T 19-04-2016 AMED_2941 57f263730b912ea2ceb65fb8518bb624 297 SUPERFAMILY SSF53822 19 284 6.42E-32 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_2941 57f263730b912ea2ceb65fb8518bb624 297 PANTHER PTHR30146:SF48 1 295 3.1E-37 T 19-04-2016 AMED_2941 57f263730b912ea2ceb65fb8518bb624 297 PANTHER PTHR30146 1 295 3.1E-37 T 19-04-2016 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF13193 AMP-binding enzyme C-terminal domain 599 671 8.6E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:1.10.1200.10 702 763 8.0E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.40.50.980 343 493 3.1E-46 T 19-04-2016 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF00550 Phosphopantetheine attachment site 701 760 6.7E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF00501 AMP-binding enzyme 190 591 4.7E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 SUPERFAMILY SSF56801 171 712 2.49E-137 T 19-04-2016 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 209 615 2.4E-114 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.30.300.30 587 701 8.8E-30 T 19-04-2016 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.40.50.980 181 342 1.0E-43 T 19-04-2016 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.40.50.1820 772 884 2.9E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:3.40.50.1820 945 1007 2.9E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Pfam PF00975 Thioesterase domain 782 1005 2.6E-18 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 ProSitePatterns PS00455 Putative AMP-binding domain signature. 333 344 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 SUPERFAMILY SSF53474 728 1008 5.62E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 PANTHER PTHR24095 69 671 2.9E-158 T 19-04-2016 AMED_6241 381be1432ccf45f3f08dac119fba1f90 1011 Gene3D G3DSA:2.30.38.10 501 580 4.1E-22 T 19-04-2016 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 SMART SM00020 21 239 2.7E-44 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 48 63 1.9E-12 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 103 117 1.9E-12 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 187 199 1.9E-12 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 SUPERFAMILY SSF50494 7 244 1.36E-53 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 Gene3D G3DSA:2.40.10.10 56 244 3.8E-41 T 19-04-2016 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 PANTHER PTHR24276 3 241 1.3E-47 T 19-04-2016 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 58 63 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 Pfam PF00089 Trypsin 27 239 6.8E-39 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_8060 f72e94292e0a0993eccfb16982456d2f 245 Gene3D G3DSA:2.40.10.10 22 55 1.6E-12 T 19-04-2016 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 8 401 2.2E-80 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 PANTHER PTHR23501:SF48 1 488 2.8E-122 T 19-04-2016 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 PANTHER PTHR23501 1 488 2.8E-122 T 19-04-2016 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 Gene3D G3DSA:1.20.1250.20 4 174 3.0E-31 T 19-04-2016 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 Pfam PF07690 Major Facilitator Superfamily 3 390 2.7E-45 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 Gene3D G3DSA:1.20.1250.20 238 401 1.4E-17 T 19-04-2016 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 Gene3D G3DSA:1.20.1250.20 449 477 1.4E-17 T 19-04-2016 AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 SUPERFAMILY SSF103473 448 477 9.02E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 SUPERFAMILY SSF103473 229 400 9.02E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8876 ad6fa93574f1306d9b4a6981a1db4e1e 492 SUPERFAMILY SSF103473 3 178 9.02E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 PANTHER PTHR30314 1 313 2.7E-187 T 19-04-2016 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 Gene3D G3DSA:3.30.1330.20 212 314 1.7E-48 T 19-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 SMART SM00865 204 321 2.8E-55 T 19-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 Pfam PF12327 FtsZ family, C-terminal domain 219 313 3.9E-35 T 19-04-2016 IPR024757 Cell division protein FtsZ, C-terminal AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 SUPERFAMILY SSF55307 201 315 1.51E-43 T 19-04-2016 IPR008280 Tubulin/FtsZ, C-terminal AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 6 330 38.188 T 19-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 11 169 1.9E-38 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 SUPERFAMILY SSF52490 9 205 3.4E-65 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 315 2.2E-126 T 19-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 PANTHER PTHR30314:SF3 1 313 2.7E-187 T 19-04-2016 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 ProSitePatterns PS01134 FtsZ protein signature 1. 41 75 - T 19-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 Gene3D G3DSA:3.40.50.1440 11 211 1.3E-90 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 SMART SM00864 10 202 2.6E-106 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 95 115 1.0E-50 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 209 230 1.0E-50 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 123 144 1.0E-50 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 PRINTS PR00423 Cell division protein FtsZ signature 186 208 1.0E-50 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMED_2955 66d68fff85cd8d9c81131cdca25e1417 434 ProSitePatterns PS01135 FtsZ protein signature 2. 94 115 - T 19-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 Gene3D G3DSA:3.40.50.720 11 156 3.9E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 PANTHER PTHR21499:SF2 5 380 1.4E-133 T 19-04-2016 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 SUPERFAMILY SSF55347 145 315 6.34E-50 T 19-04-2016 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 SUPERFAMILY SSF51735 11 166 1.84E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 SUPERFAMILY SSF55021 358 431 1.4E-12 T 19-04-2016 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 Pfam PF01842 ACT domain 363 424 2.3E-12 T 19-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 PIRSF PIRSF000098 11 439 4.7E-155 T 19-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 Gene3D G3DSA:3.30.360.10 157 312 2.7E-53 T 19-04-2016 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 Pfam PF00742 Homoserine dehydrogenase 145 328 7.5E-65 T 19-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 PANTHER PTHR21499 5 380 1.4E-133 T 19-04-2016 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 Gene3D G3DSA:3.30.70.260 360 423 8.3E-9 T 19-04-2016 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 20 137 3.0E-25 T 19-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMED_7795 54b98a0a6a805f33a74334270ce49ab1 441 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 191 213 - T 19-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 Gene3D G3DSA:1.20.1250.20 36 227 1.9E-12 T 19-04-2016 AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 SUPERFAMILY SSF103473 33 457 1.96E-35 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 PANTHER PTHR23513 12 468 2.2E-31 T 19-04-2016 AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 Pfam PF02223 Thymidylate kinase 539 656 2.8E-8 T 19-04-2016 AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 Gene3D G3DSA:3.40.50.300 480 667 3.7E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 Hamap MF_00165 Thymidylate kinase [tmk]. 481 668 13.535 T 19-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 Pfam PF05977 Transmembrane secretion effector 28 419 2.6E-16 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 SUPERFAMILY SSF52540 535 664 4.43E-14 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8788 c22a0c32735b2e4e96dd215f4128ae5d 703 Gene3D G3DSA:1.20.1250.20 274 460 6.6E-13 T 19-04-2016 AMED_1512 56156c96d99180d0899ddcef5dfd323a 359 Pfam PF07470 Glycosyl Hydrolase Family 88 45 353 6.5E-62 T 19-04-2016 IPR010905 Glycosyl hydrolase, family 88 AMED_1512 56156c96d99180d0899ddcef5dfd323a 359 PANTHER PTHR33886:SF2 57 353 5.7E-62 T 19-04-2016 AMED_1512 56156c96d99180d0899ddcef5dfd323a 359 SUPERFAMILY SSF48208 45 353 3.4E-37 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1512 56156c96d99180d0899ddcef5dfd323a 359 Gene3D G3DSA:1.50.10.10 38 354 3.4E-64 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_1512 56156c96d99180d0899ddcef5dfd323a 359 PANTHER PTHR33886 57 353 5.7E-62 T 19-04-2016 AMED_0770 68945f536378bb31ed72e9d751d07259 152 ProDom PD032647 MB3446 ML0386 RV3412/MT3521 CGL0602 55 143 3.0E-28 T 19-04-2016 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 PANTHER PTHR30246 5 201 1.7E-85 T 19-04-2016 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 Pfam PF01081 KDPG and KHG aldolase 8 184 5.8E-66 T 19-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 193 5.5E-70 T 19-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 SUPERFAMILY SSF51569 6 185 3.48E-62 T 19-04-2016 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 19-04-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562|UniPathway: UPA00227|UniPathway: UPA00856 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 19-04-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 Gene3D G3DSA:3.20.20.70 6 200 1.7E-70 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2348 f039299f7ce8d53653751f186a079a5f 201 PANTHER PTHR30246:SF0 5 201 1.7E-85 T 19-04-2016 AMED_2651 cf6c3e7fa963f0c6dd6656053137ddc8 145 Gene3D G3DSA:2.170.150.20 9 140 3.1E-59 T 19-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 AMED_2651 cf6c3e7fa963f0c6dd6656053137ddc8 145 SUPERFAMILY SSF51316 12 141 1.26E-54 T 19-04-2016 IPR011057 Mss4-like AMED_2651 cf6c3e7fa963f0c6dd6656053137ddc8 145 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 13 141 3.9E-49 T 19-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 AMED_2651 cf6c3e7fa963f0c6dd6656053137ddc8 145 Pfam PF01641 SelR domain 17 137 1.5E-51 T 19-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 AMED_2651 cf6c3e7fa963f0c6dd6656053137ddc8 145 PANTHER PTHR10173 11 138 2.4E-63 T 19-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 AMED_2651 cf6c3e7fa963f0c6dd6656053137ddc8 145 PANTHER PTHR10173:SF18 11 138 2.4E-63 T 19-04-2016 AMED_4880 c1f76475145f421938ccac9fc9fca895 293 SMART SM00046 4 130 0.0033 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_4880 c1f76475145f421938ccac9fc9fca895 293 Gene3D G3DSA:3.40.50.10330 15 85 4.8E-4 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4880 c1f76475145f421938ccac9fc9fca895 293 PANTHER PTHR12358 9 293 3.0E-47 T 19-04-2016 AMED_4880 c1f76475145f421938ccac9fc9fca895 293 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 129 7.1E-22 T 19-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMED_4880 c1f76475145f421938ccac9fc9fca895 293 SUPERFAMILY SSF111331 6 292 4.36E-64 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_4880 c1f76475145f421938ccac9fc9fca895 293 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 4 291 2.6E-35 T 19-04-2016 IPR005218 Diacylglycerol/lipid kinase AMED_1283 8717ab0b0e5a42a35453e06c48c68ae5 304 SUPERFAMILY SSF52540 2 219 5.22E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1283 8717ab0b0e5a42a35453e06c48c68ae5 304 PANTHER PTHR24220 3 216 1.5E-106 T 19-04-2016 AMED_1283 8717ab0b0e5a42a35453e06c48c68ae5 304 Pfam PF00005 ABC transporter 18 156 4.2E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1283 8717ab0b0e5a42a35453e06c48c68ae5 304 Gene3D G3DSA:3.40.50.300 1 219 4.7E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1283 8717ab0b0e5a42a35453e06c48c68ae5 304 SMART SM00382 26 204 2.0E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1283 8717ab0b0e5a42a35453e06c48c68ae5 304 PANTHER PTHR24220:SF523 3 216 1.5E-106 T 19-04-2016 AMED_0056 ff0c0db721c6023266b6ed78e701bd58 153 SMART SM00240 80 130 2.5E-12 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_0056 ff0c0db721c6023266b6ed78e701bd58 153 PANTHER PTHR21712 59 133 4.1E-38 T 19-04-2016 AMED_0056 ff0c0db721c6023266b6ed78e701bd58 153 SUPERFAMILY SSF49879 45 152 3.83E-25 T 19-04-2016 IPR008984 SMAD/FHA domain GO:0005515 AMED_0056 ff0c0db721c6023266b6ed78e701bd58 153 Gene3D G3DSA:2.60.200.20 61 151 1.5E-24 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_0056 ff0c0db721c6023266b6ed78e701bd58 153 Pfam PF00498 FHA domain 82 145 1.1E-14 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_0056 ff0c0db721c6023266b6ed78e701bd58 153 PANTHER PTHR21712:SF36 59 133 4.1E-38 T 19-04-2016 AMED_1924 1d6f280fe4e65c8cde335de0430d4650 186 SUPERFAMILY SSF48498 68 170 1.14E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1924 1d6f280fe4e65c8cde335de0430d4650 186 Gene3D G3DSA:1.10.357.10 2 166 2.3E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1924 1d6f280fe4e65c8cde335de0430d4650 186 SUPERFAMILY SSF46689 2 53 2.21E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1924 1d6f280fe4e65c8cde335de0430d4650 186 PANTHER PTHR30055:SF47 1 168 6.5E-17 T 19-04-2016 AMED_1924 1d6f280fe4e65c8cde335de0430d4650 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 47 1.3E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1924 1d6f280fe4e65c8cde335de0430d4650 186 PANTHER PTHR30055 1 168 6.5E-17 T 19-04-2016 AMED_6809 a94336e782a4493baa08004bffd5a514 533 Gene3D G3DSA:3.50.7.10 185 366 2.1E-86 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_6809 a94336e782a4493baa08004bffd5a514 533 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 19-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 AMED_6809 a94336e782a4493baa08004bffd5a514 533 Gene3D G3DSA:1.10.560.10 367 515 1.7E-36 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_6809 a94336e782a4493baa08004bffd5a514 533 PANTHER PTHR11353 1 522 7.9E-193 T 19-04-2016 AMED_6809 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF52029 185 374 7.85E-73 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_6809 a94336e782a4493baa08004bffd5a514 533 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 523 7.8E-233 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_6809 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 82 109 2.4E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_6809 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 348 373 2.4E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_6809 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 266 289 2.4E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_6809 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 396 417 2.4E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_6809 a94336e782a4493baa08004bffd5a514 533 PRINTS PR00298 60kDa chaperonin signature 26 52 2.4E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_6809 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF48592 2 135 2.47E-73 T 19-04-2016 AMED_6809 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF48592 406 522 2.47E-73 T 19-04-2016 AMED_6809 a94336e782a4493baa08004bffd5a514 533 SUPERFAMILY SSF54849 136 203 1.85E-25 T 19-04-2016 AMED_6809 a94336e782a4493baa08004bffd5a514 533 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 2.8E-85 T 19-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMED_6809 a94336e782a4493baa08004bffd5a514 533 Gene3D G3DSA:1.10.560.10 5 184 1.4E-44 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_6809 a94336e782a4493baa08004bffd5a514 533 Hamap MF_00600 60 kDa chaperonin [groL]. 1 533 39.474 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_1220 111ba0790047378c710dd619b2e383fb 447 SUPERFAMILY SSF55931 108 444 5.49E-119 T 19-04-2016 AMED_1220 111ba0790047378c710dd619b2e383fb 447 Gene3D G3DSA:3.10.20.70 6 109 6.8E-37 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 Gene3D G3DSA:3.30.590.10 110 434 2.9E-120 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMED_1220 111ba0790047378c710dd619b2e383fb 447 PANTHER PTHR20852 1 447 1.6E-172 T 19-04-2016 AMED_1220 111ba0790047378c710dd619b2e383fb 447 SMART SM01230 106 357 3.6E-127 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 Pfam PF00120 Glutamine synthetase, catalytic domain 107 441 5.6E-129 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 19-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 SUPERFAMILY SSF54368 8 104 1.31E-28 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 8 442 3.7E-137 T 19-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 100 1.3E-25 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1220 111ba0790047378c710dd619b2e383fb 447 PANTHER PTHR20852:SF7 1 447 1.6E-172 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 218 234 1.2E-15 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.2E-15 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 1.2E-15 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.2E-15 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 262 1.2E-15 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 Gene3D G3DSA:3.50.50.60 6 126 1.2E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 Gene3D G3DSA:3.50.50.60 239 289 1.2E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 Gene3D G3DSA:3.50.50.60 127 222 4.4E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 SUPERFAMILY SSF51905 1 290 9.18E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PANTHER PTHR22912:SF159 7 285 7.0E-86 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PANTHER PTHR22912 7 285 7.0E-86 T 19-04-2016 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 275 1.5E-21 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 8.6E-19 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 220 241 8.6E-19 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 267 286 8.6E-19 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 163 8.6E-19 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 8.6E-19 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_4212 dc22fa38a2484b56040cc18dd71ec69c 313 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 8.6E-19 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_2885 07ba7888aef0540b5d8fc5c7fd511c04 562 PANTHER PTHR13943 39 550 1.4E-241 T 19-04-2016 AMED_2885 07ba7888aef0540b5d8fc5c7fd511c04 562 Pfam PF07287 Protein of unknown function (DUF1446) 5 331 1.6E-129 T 19-04-2016 IPR010839 Protein of unknown function DUF1446 AMED_2885 07ba7888aef0540b5d8fc5c7fd511c04 562 PANTHER PTHR13943:SF41 39 550 1.4E-241 T 19-04-2016 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 SUPERFAMILY SSF102114 9 286 9.16E-75 T 19-04-2016 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 Pfam PF04055 Radical SAM superfamily 23 184 2.8E-29 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 Gene3D G3DSA:3.20.20.70 9 314 7.9E-80 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 Pfam PF06463 Molybdenum Cofactor Synthesis C 191 317 2.5E-36 T 19-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 9 335 2.1E-112 T 19-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 Pfam PF13353 4Fe-4S single cluster domain 25 111 1.0E-6 T 19-04-2016 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 PANTHER PTHR22960 3 289 1.8E-122 T 19-04-2016 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 SMART SM00729 18 220 2.9E-7 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 24 35 - T 19-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8516 8d1ba2327b4291d744cf089efaf6815b 335 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 9 335 40.267 T 19-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 PANTHER PTHR11624 22 337 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 Gene3D G3DSA:3.40.50.970 358 564 1.1E-76 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 ProSitePatterns PS00801 Transketolase signature 1. 34 54 - T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 SUPERFAMILY SSF52518 21 347 1.4E-102 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 PANTHER PTHR11624:SF1 364 699 0.0 T 19-04-2016 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 ProSitePatterns PS00802 Transketolase signature 2. 500 516 - T 19-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 PANTHER PTHR11624 364 699 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 PANTHER PTHR11624:SF1 22 337 0.0 T 19-04-2016 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 26 361 2.8E-140 T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 SUPERFAMILY SSF52518 371 560 2.14E-67 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 Pfam PF02780 Transketolase, C-terminal domain 571 686 2.2E-17 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 Gene3D G3DSA:3.40.50.920 569 696 6.6E-51 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 TIGRFAM TIGR00232 tktlase_bact: transketolase 29 692 9.0E-250 T 19-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 SUPERFAMILY SSF52922 563 697 3.53E-43 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 Pfam PF02779 Transketolase, pyrimidine binding domain 377 557 2.3E-45 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 SMART SM00861 378 558 3.9E-69 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_2809 fcb125c2af9438fe484c93a54c031dd7 700 Gene3D G3DSA:3.40.50.970 23 347 4.8E-113 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 152 375 4.4E-66 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 7.1E-46 T 19-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 SUPERFAMILY SSF47917 384 511 1.49E-44 T 19-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Gene3D G3DSA:2.40.30.20 5 96 3.3E-29 T 19-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 4 512 48.546 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 PANTHER PTHR15184 1 496 1.9E-270 T 19-04-2016 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 PANTHER PTHR15184:SF3 1 496 1.9E-270 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 95 4.8E-14 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 SUPERFAMILY SSF50615 14 97 7.06E-24 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 19-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Gene3D G3DSA:1.20.150.20 383 511 1.2E-51 T 19-04-2016 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 Gene3D G3DSA:3.40.50.300 98 382 7.2E-108 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 6 512 2.8E-241 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7777 bc7bb2b9233084b09304f4ccfe76d0ae 546 SUPERFAMILY SSF52540 99 381 2.95E-92 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 Gene3D G3DSA:1.10.101.10 226 279 1.1E-8 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 59 198 2.8E-11 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 PANTHER PTHR11022:SF41 7 207 2.0E-19 T 19-04-2016 AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 Gene3D G3DSA:3.40.80.10 33 214 7.3E-37 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 PANTHER PTHR11022 7 207 2.0E-19 T 19-04-2016 IPR015510 Peptidoglycan recognition protein GO:0008745|GO:0009253 AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 Pfam PF01471 Putative peptidoglycan binding domain 236 278 3.5E-5 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 SUPERFAMILY SSF47090 225 279 3.4E-8 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_8703 296b2a7226802c0ce7e10f1399df6698 318 SUPERFAMILY SSF55846 37 213 1.31E-37 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_9210 1892607261d0bae56af9cec83fb31d76 552 PIRSF PIRSF005522 35 512 9.9E-212 T 19-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 AMED_9210 1892607261d0bae56af9cec83fb31d76 552 PANTHER PTHR34595:SF3 14 520 1.7E-285 T 19-04-2016 AMED_9210 1892607261d0bae56af9cec83fb31d76 552 SUPERFAMILY SSF56059 84 247 7.19E-57 T 19-04-2016 AMED_9210 1892607261d0bae56af9cec83fb31d76 552 SUPERFAMILY SSF56059 354 500 7.19E-57 T 19-04-2016 AMED_9210 1892607261d0bae56af9cec83fb31d76 552 PANTHER PTHR34595 14 520 1.7E-285 T 19-04-2016 AMED_9210 1892607261d0bae56af9cec83fb31d76 552 Pfam PF14403 Circularly permuted ATP-grasp type 2 109 485 1.6E-158 T 19-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 244 263 3.8E-6 T 19-04-2016 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 KEGG: 00920+3.6.3.- AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 90 108 3.8E-6 T 19-04-2016 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 KEGG: 00920+3.6.3.- AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 192 209 3.8E-6 T 19-04-2016 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 KEGG: 00920+3.6.3.- AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00940 Cation-transporting P-type ATPase A signature 108 125 3.8E-6 T 19-04-2016 IPR000579 Cation-transporting P-type ATPase A/B GO:0006812|GO:0016021|GO:0019829 KEGG: 00920+3.6.3.- AMED_6537 3736a89d7b83053b12aeab59583c2961 756 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 206 741 6.4E-148 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 563 574 3.0E-21 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 585 595 3.0E-21 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 673 3.0E-21 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 441 455 3.0E-21 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 657 3.0E-21 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 291 305 3.0E-21 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PANTHER PTHR24093 206 743 4.8E-225 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PANTHER PTHR24093 11 190 4.8E-225 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.40.1110.10 457 565 6.2E-21 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 ProSitePatterns PS01047 Heavy-metal-associated domain. 17 45 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF81665 231 245 3.79E-7 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF81665 342 433 3.79E-7 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 443 449 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_6537 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF56784 439 459 1.84E-53 T 19-04-2016 IPR023214 HAD-like domain AMED_6537 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF56784 495 738 1.84E-53 T 19-04-2016 IPR023214 HAD-like domain AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Pfam PF00403 Heavy-metal-associated domain 15 73 1.5E-10 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Pfam PF00702 haloacid dehalogenase-like hydrolase 437 652 4.1E-48 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF55008 10 77 1.57E-17 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 215 718 5.1E-78 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:2.70.150.10 236 338 1.9E-22 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PANTHER PTHR24093:SF50 206 743 4.8E-225 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 PANTHER PTHR24093:SF50 11 190 4.8E-225 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.40.50.1000 566 706 8.9E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.40.50.1000 412 456 8.9E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_6537 3736a89d7b83053b12aeab59583c2961 756 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 740 7.4E-169 T 19-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Pfam PF00122 E1-E2 ATPase 214 432 4.6E-59 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 Gene3D G3DSA:3.30.70.100 9 76 1.1E-20 T 19-04-2016 AMED_6537 3736a89d7b83053b12aeab59583c2961 756 SUPERFAMILY SSF81653 246 338 1.12E-21 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 46 55 1.3E-34 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.3E-34 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.3E-34 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 165 178 1.3E-34 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 3 17 1.3E-34 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.3E-34 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 7.1E-8 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 43 57 7.1E-8 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PANTHER PTHR11922 1 190 1.7E-78 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 186 4.4E-62 T 19-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 Gene3D G3DSA:3.40.50.880 1 188 1.2E-60 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00096 Glutamine amidotransferase superfamily signature 46 55 7.2E-14 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.2E-14 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 7.2E-14 T 19-04-2016 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 Pfam PF00117 Glutamine amidotransferase class-I 5 187 4.8E-52 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 SUPERFAMILY SSF52317 1 189 8.73E-54 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_0047 1387e33d0f9b2d2d09fef07d447dbb2f 214 PANTHER PTHR11922:SF7 1 190 1.7E-78 T 19-04-2016 AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 SUPERFAMILY SSF51735 7 244 7.48E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 5.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.8E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 8.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 8.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 8.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 193 2.7E-4 T 19-04-2016 AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PANTHER PTHR24322 157 188 3.0E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 PANTHER PTHR24322 12 141 3.0E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 244 9.9E-55 T 19-04-2016 AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7172 5e53db938f6a75907442ac9b8c3d9936 245 Gene3D G3DSA:3.40.50.720 1 244 6.5E-80 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3263 28fa030a6c29003dfd880fc418a8b159 241 Gene3D G3DSA:3.30.750.24 16 111 3.3E-4 T 19-04-2016 IPR002645 STAS domain AMED_3263 28fa030a6c29003dfd880fc418a8b159 241 SUPERFAMILY SSF55874 145 238 5.42E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PRINTS PR00990 Ribokinase signature 170 185 2.0E-30 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PRINTS PR00990 Ribokinase signature 34 53 2.0E-30 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PRINTS PR00990 Ribokinase signature 206 217 2.0E-30 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PRINTS PR00990 Ribokinase signature 105 118 2.0E-30 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PRINTS PR00990 Ribokinase signature 7 28 2.0E-30 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PANTHER PTHR10584:SF184 1 287 1.4E-90 T 19-04-2016 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 Gene3D G3DSA:3.40.1190.20 2 287 3.5E-92 T 19-04-2016 IPR029056 Ribokinase-like AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 PANTHER PTHR10584 1 287 1.4E-90 T 19-04-2016 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 Pfam PF00294 pfkB family carbohydrate kinase 4 283 8.8E-67 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 235 248 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_9318 3ecc299bc06bdb1b36679ebeae2d6cae 289 SUPERFAMILY SSF53613 1 285 4.52E-82 T 19-04-2016 IPR029056 Ribokinase-like AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 5.1E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 5.1E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 5.1E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 SUPERFAMILY SSF51735 1 250 3.18E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 Pfam PF00106 short chain dehydrogenase 7 199 9.7E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 Gene3D G3DSA:3.40.50.720 2 249 1.3E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PANTHER PTHR24322 159 195 5.0E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PANTHER PTHR24322 10 143 5.0E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PANTHER PTHR24322:SF356 159 195 5.0E-55 T 19-04-2016 AMED_3853 f9c4835a89136e60df3ad35eceed3148 253 PANTHER PTHR24322:SF356 10 143 5.0E-55 T 19-04-2016 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 PANTHER PTHR10196 1 502 2.6E-271 T 19-04-2016 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 PIRSF PIRSF000538 3 504 3.1E-160 T 19-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 366 386 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 255 2.9E-70 T 19-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 Gene3D G3DSA:3.30.420.40 3 256 2.4E-100 T 19-04-2016 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 500 2.1E-226 T 19-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 PANTHER PTHR10196:SF69 1 502 2.6E-271 T 19-04-2016 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 Hamap MF_00186 Glycerol kinase [glpK]. 2 501 55.376 T 19-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 Gene3D G3DSA:3.30.420.40 258 502 8.2E-105 T 19-04-2016 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 SUPERFAMILY SSF53067 258 501 3.54E-85 T 19-04-2016 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 454 1.8E-68 T 19-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4414 81e46724268cfba0d564c933d6dabf52 504 SUPERFAMILY SSF53067 4 258 1.62E-85 T 19-04-2016 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 65 1109 12.51 T 19-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Pfam PF14579 Helix-hairpin-helix motif 849 941 1.4E-24 T 19-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 359 776 3.5E-138 T 19-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 SUPERFAMILY SSF89550 65 279 5.69E-19 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 SMART SM00481 66 133 3.9E-23 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 PANTHER PTHR32294:SF4 61 1096 0.0 T 19-04-2016 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Gene3D G3DSA:2.40.50.140 1008 1096 3.1E-5 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 66 943 1.0E-197 T 19-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Pfam PF02811 PHP domain 67 237 3.0E-27 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Gene3D G3DSA:3.20.20.140 66 280 5.0E-24 T 19-04-2016 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 PANTHER PTHR32294 61 1096 0.0 T 19-04-2016 AMED_7446 803d91c2893ac9eef22b252c07fb15fd 1109 Gene3D G3DSA:1.10.150.280 882 929 2.4E-4 T 19-04-2016 AMED_1595 8009f715e8e60d5b429e566276e55339 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 1.8E-17 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1595 8009f715e8e60d5b429e566276e55339 327 SUPERFAMILY SSF47413 1 56 3.64E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1595 8009f715e8e60d5b429e566276e55339 327 SMART SM00354 1 69 2.3E-24 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_1595 8009f715e8e60d5b429e566276e55339 327 Pfam PF13377 Periplasmic binding protein-like domain 166 322 1.6E-28 T 19-04-2016 AMED_1595 8009f715e8e60d5b429e566276e55339 327 Gene3D G3DSA:3.40.50.2300 167 322 6.3E-45 T 19-04-2016 AMED_1595 8009f715e8e60d5b429e566276e55339 327 PANTHER PTHR30146:SF41 1 327 2.3E-126 T 19-04-2016 AMED_1595 8009f715e8e60d5b429e566276e55339 327 SUPERFAMILY SSF53822 59 322 5.1E-61 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1595 8009f715e8e60d5b429e566276e55339 327 PANTHER PTHR30146 1 327 2.3E-126 T 19-04-2016 AMED_1595 8009f715e8e60d5b429e566276e55339 327 Gene3D G3DSA:1.10.260.40 1 56 8.5E-23 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1595 8009f715e8e60d5b429e566276e55339 327 Gene3D G3DSA:3.40.50.2300 57 166 1.4E-31 T 19-04-2016 AMED_1595 8009f715e8e60d5b429e566276e55339 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 341 350 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 SUPERFAMILY SSF48264 12 400 6.42E-91 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 Pfam PF00067 Cytochrome P450 271 377 3.4E-18 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 Pfam PF00067 Cytochrome P450 40 265 3.3E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 Gene3D G3DSA:1.10.630.10 13 399 2.0E-113 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PANTHER PTHR11712 14 389 2.7E-84 T 19-04-2016 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 348 359 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 80 91 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 318 333 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 143 158 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 273 284 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 126 142 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 192 214 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 339 348 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3107 74da7dc4f4faec5294e4fe8d388a96d3 401 PRINTS PR00359 B-class P450 signature 290 317 6.7E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 Gene3D G3DSA:3.60.150.10 1 393 1.5E-148 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 Pfam PF01264 Chorismate synthase 2 369 1.4E-113 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 ProSitePatterns PS00787 Chorismate synthase signature 1. 8 23 - T 19-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 PANTHER PTHR21085 107 395 1.0E-159 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 PANTHER PTHR21085 1 89 1.0E-159 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 PIRSF PIRSF001456 1 389 3.0E-124 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 ProSitePatterns PS00788 Chorismate synthase signature 2. 134 150 - T 19-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 SUPERFAMILY SSF103263 1 392 4.71E-132 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 Hamap MF_00300 Chorismate synthase [aroC]. 2 376 34.317 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 ProSitePatterns PS00789 Chorismate synthase signature 3. 343 359 - T 19-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2733 5fbbf277fe5bf545d611a6860bd33648 395 TIGRFAM TIGR00033 aroC: chorismate synthase 2 374 1.8E-122 T 19-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_4013 1c5015f9260692fea806cf0aff2d973d 298 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 120 148 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4013 1c5015f9260692fea806cf0aff2d973d 298 SUPERFAMILY SSF51735 3 291 6.86E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4013 1c5015f9260692fea806cf0aff2d973d 298 PANTHER PTHR10366 2 290 6.8E-41 T 19-04-2016 AMED_4013 1c5015f9260692fea806cf0aff2d973d 298 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 219 3.3E-28 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4013 1c5015f9260692fea806cf0aff2d973d 298 Gene3D G3DSA:3.40.50.720 3 291 1.3E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 SMART SM00354 2 72 4.7E-22 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 4.6E-14 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 SUPERFAMILY SSF53822 61 331 1.49E-73 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 Pfam PF13377 Periplasmic binding protein-like domain 169 330 7.2E-39 T 19-04-2016 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 Gene3D G3DSA:1.10.260.40 3 54 1.4E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 SUPERFAMILY SSF47413 2 59 6.1E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 PANTHER PTHR30146 1 330 3.5E-111 T 19-04-2016 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 Gene3D G3DSA:3.40.50.2300 174 310 1.1E-53 T 19-04-2016 AMED_5250 8404707d23e1d04f1e81b7b7d46fd242 348 Gene3D G3DSA:3.40.50.2300 55 173 5.4E-33 T 19-04-2016 AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 Pfam PF13191 AAA ATPase domain 6 141 3.8E-8 T 19-04-2016 AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 SMART SM00421 781 838 2.9E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:1.25.40.10 473 747 5.7E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 SUPERFAMILY SSF52540 11 206 6.79E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 Pfam PF00196 Bacterial regulatory proteins, luxR family 784 836 6.2E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:3.40.50.300 9 65 5.7E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:3.40.50.300 101 157 5.7E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 SUPERFAMILY SSF46894 778 844 5.78E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6465 1778f60ea1f87e2b6f46f12a9b23400a 849 Gene3D G3DSA:1.10.10.10 780 843 2.5E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 PANTHER PTHR22845 153 623 2.2E-83 T 19-04-2016 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF52540 268 529 5.24E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM01043 110 252 3.5E-31 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 Pfam PF13374 Tetratricopeptide repeat 755 787 0.0059 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 Pfam PF03704 Bacterial transcriptional activator domain 110 252 9.3E-30 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 Pfam PF00486 Transcriptional regulatory protein, C terminal 37 93 2.3E-6 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00028 716 749 320.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00028 756 789 5.1 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00028 836 869 66.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF46894 17 103 5.67E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF48452 105 265 6.45E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 PRINTS PR00364 Disease resistance protein signature 373 387 2.1E-7 T 19-04-2016 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 PRINTS PR00364 Disease resistance protein signature 460 474 2.1E-7 T 19-04-2016 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 PRINTS PR00364 Disease resistance protein signature 295 310 2.1E-7 T 19-04-2016 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.25.40.10 789 911 5.3E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.25.40.10 691 788 4.4E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 Gene3D G3DSA:1.10.10.10 26 104 6.6E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 PANTHER PTHR22845:SF4 153 623 2.2E-83 T 19-04-2016 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SMART SM00862 31 103 3.5E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1726 c64cc59fa670b920efc40f468fe2da5d 937 SUPERFAMILY SSF48452 707 914 4.75E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 536 1.1E-18 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 PANTHER PTHR24095:SF180 22 551 2.5E-193 T 19-04-2016 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 Gene3D G3DSA:2.30.38.10 369 444 3.5E-17 T 19-04-2016 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 Pfam PF00501 AMP-binding enzyme 59 450 1.1E-73 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 Gene3D G3DSA:3.40.50.980 211 368 1.3E-25 T 19-04-2016 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 Gene3D G3DSA:3.40.50.980 58 210 6.1E-28 T 19-04-2016 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 Gene3D G3DSA:3.30.300.30 449 548 1.6E-23 T 19-04-2016 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 PANTHER PTHR24095 22 551 2.5E-193 T 19-04-2016 AMED_4996 5766befec9cbbfd27947dce6606f7ac0 567 SUPERFAMILY SSF56801 12 549 2.22E-129 T 19-04-2016 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 SUPERFAMILY SSF48452 742 854 4.51E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:1.10.10.10 871 927 1.0E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 SMART SM00421 874 931 4.7E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 907 919 1.9E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 877 891 1.9E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 891 907 1.9E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Pfam PF00196 Bacterial regulatory proteins, luxR family 877 927 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 SUPERFAMILY SSF52540 20 238 1.01E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Pfam PF13191 AAA ATPase domain 23 174 7.9E-13 T 19-04-2016 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 SUPERFAMILY SSF46894 865 927 1.29E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:1.25.40.10 613 675 2.2E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:1.25.40.10 740 845 2.2E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:1.25.40.10 392 407 2.2E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1177 b81d73c22caac71541b0f1e023ff6821 941 Gene3D G3DSA:3.40.50.300 48 177 1.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8732 9171c3069be5166b082bbfee256de4e1 285 Gene3D G3DSA:1.10.10.60 224 272 4.1E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8732 9171c3069be5166b082bbfee256de4e1 285 SMART SM00342 185 270 1.8E-14 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8732 9171c3069be5166b082bbfee256de4e1 285 SUPERFAMILY SSF46689 223 272 4.93E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8732 9171c3069be5166b082bbfee256de4e1 285 Pfam PF12833 Helix-turn-helix domain 192 271 1.2E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8732 9171c3069be5166b082bbfee256de4e1 285 Gene3D G3DSA:1.10.10.60 168 223 6.1E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8732 9171c3069be5166b082bbfee256de4e1 285 PANTHER PTHR11019 162 278 4.3E-18 T 19-04-2016 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 SUPERFAMILY SSF52172 2 141 4.41E-17 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 PANTHER PTHR26402 1 197 9.2E-60 T 19-04-2016 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 SMART SM00448 1 120 1.4E-6 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 PANTHER PTHR26402:SF582 1 197 9.2E-60 T 19-04-2016 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 Pfam PF00072 Response regulator receiver domain 3 108 3.9E-13 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 202 4.0E-5 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 SMART SM00421 148 205 3.7E-4 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 Gene3D G3DSA:1.10.10.10 150 207 4.2E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 Gene3D G3DSA:3.40.50.2300 2 149 1.8E-22 T 19-04-2016 AMED_5859 4fec632056ee11ff5a1b987e6c452863 208 SUPERFAMILY SSF46894 133 207 1.26E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_9250 54b0c70feffd3eed97dc358e18801de4 201 Pfam PF00005 ABC transporter 18 155 6.7E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9250 54b0c70feffd3eed97dc358e18801de4 201 Gene3D G3DSA:3.40.50.300 1 198 3.2E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9250 54b0c70feffd3eed97dc358e18801de4 201 SUPERFAMILY SSF52540 9 200 8.04E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9250 54b0c70feffd3eed97dc358e18801de4 201 PANTHER PTHR24220 3 200 5.3E-45 T 19-04-2016 AMED_9250 54b0c70feffd3eed97dc358e18801de4 201 SMART SM00382 26 200 1.9E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9250 54b0c70feffd3eed97dc358e18801de4 201 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4535 190f3fab9503bea06fa99570828caebb 690 Gene3D G3DSA:2.60.40.10 186 270 2.2E-12 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_4535 190f3fab9503bea06fa99570828caebb 690 Gene3D G3DSA:1.10.390.10 615 680 5.6E-7 T 19-04-2016 AMED_4535 190f3fab9503bea06fa99570828caebb 690 PANTHER PTHR11533:SF185 283 683 1.9E-44 T 19-04-2016 AMED_4535 190f3fab9503bea06fa99570828caebb 690 SUPERFAMILY SSF49313 186 270 1.16E-13 T 19-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 AMED_4535 190f3fab9503bea06fa99570828caebb 690 Pfam PF05345 Putative Ig domain 217 256 4.1E-10 T 19-04-2016 IPR008009 Putative Ig AMED_4535 190f3fab9503bea06fa99570828caebb 690 PANTHER PTHR11533 283 683 1.9E-44 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_4535 190f3fab9503bea06fa99570828caebb 690 Pfam PF01433 Peptidase family M1 425 610 6.0E-13 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_4535 190f3fab9503bea06fa99570828caebb 690 SUPERFAMILY SSF55486 479 683 1.1E-36 T 19-04-2016 AMED_4535 190f3fab9503bea06fa99570828caebb 690 SMART SM00736 186 275 0.0014 T 19-04-2016 IPR006644 Dystroglycan-type cadherin-like GO:0016020 AMED_2877 94798626a60277682c294c2d2e8e128a 152 PANTHER PTHR22769 30 149 1.3E-15 T 19-04-2016 AMED_2877 94798626a60277682c294c2d2e8e128a 152 ProSitePatterns PS00893 Nudix box signature. 57 78 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_2877 94798626a60277682c294c2d2e8e128a 152 Pfam PF00293 NUDIX domain 30 146 4.3E-15 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_2877 94798626a60277682c294c2d2e8e128a 152 PRINTS PR00502 NUDIX hydrolase family signature 52 66 3.4E-7 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_2877 94798626a60277682c294c2d2e8e128a 152 PRINTS PR00502 NUDIX hydrolase family signature 66 81 3.4E-7 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_2877 94798626a60277682c294c2d2e8e128a 152 SUPERFAMILY SSF55811 28 149 1.02E-24 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_2877 94798626a60277682c294c2d2e8e128a 152 Gene3D G3DSA:3.90.79.10 30 149 3.9E-23 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8560 a626ecbe07840c45721c3f05f56f8c18 417 Pfam PF05977 Transmembrane secretion effector 8 399 3.6E-29 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_8560 a626ecbe07840c45721c3f05f56f8c18 417 PANTHER PTHR23513 7 415 3.5E-58 T 19-04-2016 AMED_8560 a626ecbe07840c45721c3f05f56f8c18 417 SUPERFAMILY SSF103473 7 397 4.19E-40 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8560 a626ecbe07840c45721c3f05f56f8c18 417 Gene3D G3DSA:1.20.1250.20 216 397 2.7E-13 T 19-04-2016 AMED_8560 a626ecbe07840c45721c3f05f56f8c18 417 Gene3D G3DSA:1.20.1250.20 7 191 1.1E-12 T 19-04-2016 AMED_0871 5a36ab472ecee7213bc3f250edfc07f6 446 PANTHER PTHR30061:SF3 5 438 2.3E-120 T 19-04-2016 AMED_0871 5a36ab472ecee7213bc3f250edfc07f6 446 Gene3D G3DSA:3.40.190.10 164 356 1.2E-45 T 19-04-2016 AMED_0871 5a36ab472ecee7213bc3f250edfc07f6 446 Pfam PF01547 Bacterial extracellular solute-binding protein 46 335 1.3E-45 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_0871 5a36ab472ecee7213bc3f250edfc07f6 446 PANTHER PTHR30061 5 438 2.3E-120 T 19-04-2016 AMED_0871 5a36ab472ecee7213bc3f250edfc07f6 446 SUPERFAMILY SSF53850 18 439 7.91E-68 T 19-04-2016 AMED_0871 5a36ab472ecee7213bc3f250edfc07f6 446 Gene3D G3DSA:3.40.190.10 33 163 4.0E-21 T 19-04-2016 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 SMART SM00448 2 113 2.2E-39 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 2.4E-23 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 SMART SM00862 146 221 6.4E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 Pfam PF00072 Response regulator receiver domain 4 113 6.9E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 Gene3D G3DSA:1.10.10.10 125 220 1.0E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 PANTHER PTHR26402 2 219 3.3E-85 T 19-04-2016 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 Gene3D G3DSA:3.40.50.2300 3 123 1.5E-37 T 19-04-2016 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 PANTHER PTHR26402:SF316 2 219 3.3E-85 T 19-04-2016 AMED_7943 4fd5ba08b5adc0df936b5a407de4f68e 226 SUPERFAMILY SSF52172 3 172 2.93E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 SUPERFAMILY SSF52935 302 448 9.16E-35 T 19-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 Gene3D G3DSA:3.40.1380.20 305 446 1.4E-34 T 19-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 Pfam PF00224 Pyruvate kinase, barrel domain 2 315 4.1E-109 T 19-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PANTHER PTHR11817 2 451 5.6E-193 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 ProSitePatterns PS00110 Pyruvate kinase active site signature. 194 206 - T 19-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 Gene3D G3DSA:2.40.33.10 54 147 1.0E-30 T 19-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 Gene3D G3DSA:3.20.20.60 1 53 4.1E-92 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 Gene3D G3DSA:3.20.20.60 148 304 4.1E-92 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 SUPERFAMILY SSF50800 51 145 1.55E-26 T 19-04-2016 IPR011037 Pyruvate kinase-like, insert domain AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 Pfam PF02887 Pyruvate kinase, alpha/beta domain 335 446 8.2E-25 T 19-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 SUPERFAMILY SSF51621 2 56 1.22E-87 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 SUPERFAMILY SSF51621 146 316 1.22E-87 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 447 3.0E-158 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 273 291 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 165 179 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 223 247 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 196 222 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 248 272 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 292 308 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_2469 e8f098121f128e8d6f3ec8b8b44e6028 454 PRINTS PR01050 Pyruvate kinase family signature 40 56 1.3E-64 T 19-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 Gene3D G3DSA:1.20.140.10 230 363 4.8E-32 T 19-04-2016 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 PANTHER PTHR10909 13 363 1.0E-85 T 19-04-2016 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 Gene3D G3DSA:1.10.540.10 13 126 6.2E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 203 2.0E-12 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 SUPERFAMILY SSF47203 229 370 6.44E-34 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 124 2.6E-19 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 372 4.6E-26 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 Gene3D G3DSA:2.40.110.10 129 214 1.0E-15 T 19-04-2016 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 SUPERFAMILY SSF56645 12 218 5.5E-45 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3876 4bf29b9986a388debac24a99d36c6deb 378 PANTHER PTHR10909:SF302 13 363 1.0E-85 T 19-04-2016 AMED_2704 50330cf93382de71a999a86a12775093 288 SUPERFAMILY SSF52266 39 228 8.09E-28 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_2704 50330cf93382de71a999a86a12775093 288 Gene3D G3DSA:3.40.50.1110 39 222 3.9E-23 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_2704 50330cf93382de71a999a86a12775093 288 PANTHER PTHR30383:SF8 39 221 2.3E-16 T 19-04-2016 AMED_2704 50330cf93382de71a999a86a12775093 288 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 43 218 4.4E-20 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_2704 50330cf93382de71a999a86a12775093 288 PANTHER PTHR30383 39 221 2.3E-16 T 19-04-2016 AMED_4656 c5a03abef979094554e71c3992b7d32b 341 SUPERFAMILY SSF161098 114 324 1.96E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4656 c5a03abef979094554e71c3992b7d32b 341 PANTHER PTHR30465:SF53 8 340 1.7E-117 T 19-04-2016 AMED_4656 c5a03abef979094554e71c3992b7d32b 341 PANTHER PTHR30465 8 340 1.7E-117 T 19-04-2016 AMED_4656 c5a03abef979094554e71c3992b7d32b 341 Gene3D G3DSA:1.10.3720.10 113 336 3.2E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4656 c5a03abef979094554e71c3992b7d32b 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 137 339 4.9E-40 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Pfam PF03129 Anticodon binding domain 489 578 1.9E-17 T 19-04-2016 IPR004154 Anticodon-binding AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.30.930.10 8 206 1.0E-91 T 19-04-2016 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.30.930.10 405 481 1.0E-91 T 19-04-2016 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.90.960.10 251 393 1.6E-9 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PANTHER PTHR11451:SF3 3 246 1.4E-128 T 19-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 70 88 6.6E-15 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 136 144 6.6E-15 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 146 157 6.6E-15 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 106 117 6.6E-15 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Pfam PF04073 Aminoacyl-tRNA editing domain 259 392 2.6E-21 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PANTHER PTHR11451 412 581 1.4E-128 T 19-04-2016 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PANTHER PTHR11451 3 246 1.4E-128 T 19-04-2016 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Gene3D G3DSA:3.40.50.800 485 580 2.8E-25 T 19-04-2016 IPR004154 Anticodon-binding AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 PANTHER PTHR11451:SF3 412 581 1.4E-128 T 19-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 4 577 1.8E-169 T 19-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF52954 477 581 2.45E-27 T 19-04-2016 IPR004154 Anticodon-binding AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF55826 254 391 4.58E-11 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Hamap MF_01569 Proline--tRNA ligase [proS]. 3 581 36.62 T 19-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 96 472 3.0E-35 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF55681 12 239 1.21E-84 T 19-04-2016 AMED_2076 9f0f25e1679bde389a2a7d892c3d3189 582 SUPERFAMILY SSF55681 420 491 1.21E-84 T 19-04-2016 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 PANTHER PTHR10909:SF316 14 329 3.8E-25 T 19-04-2016 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 212 337 4.6E-18 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 PIRSF PIRSF016578 2 354 2.2E-67 T 19-04-2016 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 SUPERFAMILY SSF56645 5 191 2.82E-20 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 PANTHER PTHR10909 14 329 3.8E-25 T 19-04-2016 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 SUPERFAMILY SSF47203 212 337 1.71E-9 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 Gene3D G3DSA:1.10.540.10 11 103 3.1E-14 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 Gene3D G3DSA:1.20.140.10 186 350 2.1E-27 T 19-04-2016 AMED_3751 e80f6f65cd766e198fc9ac0da0494e21 354 Gene3D G3DSA:2.40.110.10 108 185 1.7E-16 T 19-04-2016 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 Pfam PF02622 Uncharacterized ACR, COG1678 17 174 1.9E-39 T 19-04-2016 IPR003774 Protein of unknown function UPF0301 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 SUPERFAMILY SSF143456 7 185 3.01E-49 T 19-04-2016 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 PANTHER PTHR30327 10 190 1.6E-43 T 19-04-2016 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 Gene3D G3DSA:3.40.1740.10 6 45 1.0E-26 T 19-04-2016 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 Gene3D G3DSA:3.40.1740.10 131 177 1.0E-26 T 19-04-2016 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 6 187 26.613 T 19-04-2016 IPR003774 Protein of unknown function UPF0301 AMED_9333 27b7b2b5fb02dc6c0a36015588c0e4f2 190 PANTHER PTHR30327:SF1 10 190 1.6E-43 T 19-04-2016 AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 Pfam PF00754 F5/8 type C domain 50 162 8.1E-27 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 Gene3D G3DSA:2.60.120.260 41 171 1.4E-32 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 PANTHER PTHR10066:SF12 332 721 3.9E-99 T 19-04-2016 AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 SUPERFAMILY SSF49785 44 167 1.06E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 PANTHER PTHR10066 332 721 3.9E-99 T 19-04-2016 AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 SUPERFAMILY SSF51126 445 513 2.15E-7 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_5253 81d4f5347e67268ef2842f39eb1c3120 737 SUPERFAMILY SSF51126 561 704 2.15E-7 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_0318 26cf41d6f5003ad7c9b75cc4fc3ffd7a 298 Gene3D G3DSA:3.40.710.10 143 283 1.9E-9 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0318 26cf41d6f5003ad7c9b75cc4fc3ffd7a 298 SUPERFAMILY SSF56601 93 294 7.52E-21 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0318 26cf41d6f5003ad7c9b75cc4fc3ffd7a 298 Gene3D G3DSA:3.40.710.10 93 135 5.0E-6 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PANTHER PTHR19139 4 228 1.1E-60 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 Gene3D G3DSA:1.20.1080.10 2 230 3.0E-61 T 19-04-2016 IPR023271 Aquaporin-like AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 Pfam PF00230 Major intrinsic protein 4 223 2.0E-47 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 7 26 5.1E-41 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 84 103 5.1E-41 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 164 186 5.1E-41 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 133 151 5.1E-41 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 47 71 5.1E-41 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 PRINTS PR00783 Major intrinsic protein family signature 207 227 5.1E-41 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 ProSitePatterns PS00221 MIP family signature. 65 73 - T 19-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 AMED_5085 9d28e00fd1f7dfcc539212a59785180b 238 SUPERFAMILY SSF81338 5 229 4.06E-55 T 19-04-2016 IPR023271 Aquaporin-like AMED_1160 de523396271195433f0cd3addffcbb94 107 PANTHER PTHR38600 1 90 7.1E-17 T 19-04-2016 AMED_1160 de523396271195433f0cd3addffcbb94 107 SMART SM00418 6 85 8.9E-16 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_1160 de523396271195433f0cd3addffcbb94 107 Pfam PF12840 Helix-turn-helix domain 6 65 2.1E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1160 de523396271195433f0cd3addffcbb94 107 PANTHER PTHR38600:SF1 1 90 7.1E-17 T 19-04-2016 AMED_1160 de523396271195433f0cd3addffcbb94 107 SUPERFAMILY SSF46785 3 96 7.93E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1160 de523396271195433f0cd3addffcbb94 107 Gene3D G3DSA:1.10.10.10 5 104 1.6E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1160 de523396271195433f0cd3addffcbb94 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.3E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_1160 de523396271195433f0cd3addffcbb94 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.3E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_1160 de523396271195433f0cd3addffcbb94 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 1.3E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 SUPERFAMILY SSF53474 8 240 4.9E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 1.3E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 1.3E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 Gene3D G3DSA:3.40.50.1820 8 240 4.1E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 Pfam PF12697 Alpha/beta hydrolase family 16 235 3.5E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 PANTHER PTHR10992 141 240 7.3E-18 T 19-04-2016 AMED_2028 ad5fe80d3d3eaf611ec2661f3db74f31 242 PANTHER PTHR10992 3 94 7.3E-18 T 19-04-2016 AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 SUPERFAMILY SSF53474 391 645 2.16E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 PANTHER PTHR11731:SF90 7 659 2.3E-86 T 19-04-2016 AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 SUPERFAMILY SSF82171 17 342 2.22E-40 T 19-04-2016 AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF07676 WD40-like Beta Propeller Repeat 57 90 7.6E-7 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF07676 WD40-like Beta Propeller Repeat 181 204 0.002 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF07676 WD40-like Beta Propeller Repeat 19 35 0.015 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF00326 Prolyl oligopeptidase family 446 648 1.7E-46 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:3.40.50.1820 328 646 5.6E-70 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:2.130.10.10 13 327 1.4E-53 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Pfam PF00144 Beta-lactamase 665 986 8.9E-64 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 Gene3D G3DSA:3.40.710.10 672 996 2.7E-80 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 SUPERFAMILY SSF56601 661 995 5.64E-79 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3466 aeb310c01d971af69704b9fe6de03a3f 1107 PANTHER PTHR11731 7 659 2.3E-86 T 19-04-2016 AMED_5419 20979b5d5be19135b4282ccb13f22cc2 381 SUPERFAMILY SSF53756 1 380 3.14E-68 T 19-04-2016 AMED_5419 20979b5d5be19135b4282ccb13f22cc2 381 Gene3D G3DSA:3.40.50.2000 1 148 3.1E-31 T 19-04-2016 AMED_5419 20979b5d5be19135b4282ccb13f22cc2 381 Gene3D G3DSA:3.40.50.2000 211 358 3.5E-22 T 19-04-2016 AMED_5419 20979b5d5be19135b4282ccb13f22cc2 381 Pfam PF06722 Protein of unknown function (DUF1205) 174 266 4.0E-8 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_4989 6962a2a81e445ca073f331171b82a79d 237 PANTHER PTHR30204:SF9 1 78 3.4E-35 T 19-04-2016 AMED_4989 6962a2a81e445ca073f331171b82a79d 237 PANTHER PTHR30204 1 78 3.4E-35 T 19-04-2016 AMED_4989 6962a2a81e445ca073f331171b82a79d 237 SUPERFAMILY SSF46955 16 81 2.66E-12 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4989 6962a2a81e445ca073f331171b82a79d 237 Gene3D G3DSA:1.10.1660.10 16 82 4.8E-17 T 19-04-2016 AMED_4989 6962a2a81e445ca073f331171b82a79d 237 Pfam PF00376 MerR family regulatory protein 12 43 1.9E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4989 6962a2a81e445ca073f331171b82a79d 237 SMART SM00422 1 75 5.9E-18 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0693 48050faafed81032f29d69552c9bc6b9 134 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 20 134 1.3E-47 T 19-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0693 48050faafed81032f29d69552c9bc6b9 134 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 20 134 27.274 T 19-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0693 48050faafed81032f29d69552c9bc6b9 134 Gene3D G3DSA:3.30.420.100 38 134 9.7E-39 T 19-04-2016 AMED_0693 48050faafed81032f29d69552c9bc6b9 134 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 23 134 3.5E-40 T 19-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0693 48050faafed81032f29d69552c9bc6b9 134 PANTHER PTHR12899 20 134 4.0E-37 T 19-04-2016 AMED_0693 48050faafed81032f29d69552c9bc6b9 134 SUPERFAMILY SSF53137 21 132 9.59E-47 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 PANTHER PTHR11772:SF10 473 635 4.3E-171 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 PANTHER PTHR11772:SF10 2 386 4.3E-171 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 Gene3D G3DSA:3.60.20.10 17 225 3.7E-71 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 SUPERFAMILY SSF56235 1 223 4.72E-59 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 SUPERFAMILY SSF52402 240 384 3.26E-66 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 SUPERFAMILY SSF52402 482 621 3.26E-66 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 560 9.4E-123 T 19-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 Pfam PF00733 Asparagine synthase 240 627 3.8E-90 T 19-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 Gene3D G3DSA:3.40.50.620 477 627 2.6E-75 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 Gene3D G3DSA:3.40.50.620 238 380 2.6E-75 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 Pfam PF13537 Glutamine amidotransferase domain 48 165 3.0E-41 T 19-04-2016 IPR017932 Glutamine amidotransferase type 2 domain AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 PANTHER PTHR11772 473 635 4.3E-171 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 PANTHER PTHR11772 2 386 4.3E-171 T 19-04-2016 AMED_0551 23f7fabe2c80c6380f93e7382d4e8024 636 PIRSF PIRSF001589 1 636 2.4E-143 T 19-04-2016 AMED_3895 e533f52f8fe3dbbbef51becbc1918134 409 SUPERFAMILY SSF51197 4 409 7.78E-128 T 19-04-2016 AMED_3895 e533f52f8fe3dbbbef51becbc1918134 409 Pfam PF07350 Protein of unknown function (DUF1479) 10 409 5.2E-122 T 19-04-2016 IPR010856 Protein of unknown function DUF1479 AMED_3895 e533f52f8fe3dbbbef51becbc1918134 409 PANTHER PTHR30613 1 409 2.0E-168 T 19-04-2016 AMED_3895 e533f52f8fe3dbbbef51becbc1918134 409 Gene3D G3DSA:2.60.120.330 4 409 3.0E-136 T 19-04-2016 IPR027443 Isopenicillin N synthase-like AMED_3895 e533f52f8fe3dbbbef51becbc1918134 409 PANTHER PTHR30613:SF4 1 409 2.0E-168 T 19-04-2016 AMED_1603 f5a9a430481ff123629c923163ec6e93 478 SUPERFAMILY SSF55486 55 208 6.35E-8 T 19-04-2016 AMED_1603 f5a9a430481ff123629c923163ec6e93 478 PANTHER PTHR30168 68 275 4.4E-12 T 19-04-2016 AMED_1603 f5a9a430481ff123629c923163ec6e93 478 Pfam PF04228 Putative neutral zinc metallopeptidase 68 267 4.0E-15 T 19-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMED_8517 220415ab0900481d7a7b9e695637b11f 83 PANTHER PTHR33359:SF1 1 83 2.7E-16 T 19-04-2016 AMED_8517 220415ab0900481d7a7b9e695637b11f 83 PANTHER PTHR33359 1 83 2.7E-16 T 19-04-2016 AMED_8517 220415ab0900481d7a7b9e695637b11f 83 Gene3D G3DSA:3.10.20.30 2 83 1.7E-19 T 19-04-2016 IPR012675 Beta-grasp domain AMED_8517 220415ab0900481d7a7b9e695637b11f 83 SUPERFAMILY SSF54285 2 81 5.05E-14 T 19-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMED_8517 220415ab0900481d7a7b9e695637b11f 83 Pfam PF02597 ThiS family 5 83 1.5E-12 T 19-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 Gene3D G3DSA:3.40.50.1820 8 303 4.7E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0191 894ab55b990727ab4cf27549e36809b6 304 Pfam PF00561 alpha/beta hydrolase fold 50 166 2.6E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PANTHER PTHR10992:SF877 8 304 9.6E-45 T 19-04-2016 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00111 Alpha/beta hydrolase fold signature 76 91 3.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00111 Alpha/beta hydrolase fold signature 137 150 3.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 3.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PANTHER PTHR10992 8 304 9.6E-45 T 19-04-2016 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00412 Epoxide hydrolase signature 56 74 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00412 Epoxide hydrolase signature 279 301 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00412 Epoxide hydrolase signature 123 136 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 PRINTS PR00412 Epoxide hydrolase signature 76 91 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_0191 894ab55b990727ab4cf27549e36809b6 304 SUPERFAMILY SSF53474 18 303 2.38E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5003 960312f91d075de12c33791892c8778d 55 SUPERFAMILY SSF57829 4 55 1.53E-17 T 19-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMED_5003 960312f91d075de12c33791892c8778d 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 7 55 14.212 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5003 960312f91d075de12c33791892c8778d 55 PANTHER PTHR15238 1 54 4.5E-24 T 19-04-2016 AMED_5003 960312f91d075de12c33791892c8778d 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 4.2E-22 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5003 960312f91d075de12c33791892c8778d 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 23 42 - T 19-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5003 960312f91d075de12c33791892c8778d 55 Pfam PF00471 Ribosomal protein L33 10 55 5.6E-17 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 SUPERFAMILY SSF53474 5 278 2.11E-65 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 3.1E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 224 238 3.1E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 3.1E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 3.1E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 PANTHER PTHR10992 8 280 4.4E-54 T 19-04-2016 AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 Gene3D G3DSA:3.40.50.1820 3 279 3.8E-69 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2523 4204db2ce7c95ed2162c8e3ac4a5de88 281 Pfam PF00561 alpha/beta hydrolase fold 29 267 4.4E-25 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 PANTHER PTHR24220:SF0 6 227 3.9E-96 T 19-04-2016 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 PANTHER PTHR24220:SF0 296 316 3.9E-96 T 19-04-2016 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 Pfam PF00005 ABC transporter 20 163 1.8E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 SMART SM00382 29 212 1.2E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 Pfam PF13732 Domain of unknown function (DUF4162) 217 306 8.0E-7 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 SUPERFAMILY SSF52540 4 226 6.89E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 Gene3D G3DSA:3.40.50.300 2 230 7.5E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 308 8.2E-108 T 19-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 PANTHER PTHR24220 6 227 3.9E-96 T 19-04-2016 AMED_8719 1736e3139f96c7ac503bbaff88644c6c 325 PANTHER PTHR24220 296 316 3.9E-96 T 19-04-2016 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 Gene3D G3DSA:3.40.190.10 76 161 9.1E-29 T 19-04-2016 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 Gene3D G3DSA:3.40.190.10 263 300 9.1E-29 T 19-04-2016 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 SMART SM00062 79 302 1.1E-57 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 SUPERFAMILY SSF53850 59 299 2.5E-54 T 19-04-2016 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 103 116 - T 19-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 PANTHER PTHR18966:SF234 50 302 2.0E-74 T 19-04-2016 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 PANTHER PTHR18966 50 302 2.0E-74 T 19-04-2016 AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 80 299 1.6E-47 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_0347 3469f310573cb7ad88bb27fe96de8094 314 Gene3D G3DSA:3.40.190.10 162 262 2.1E-22 T 19-04-2016 AMED_6921 d734d573b85cb026e031473309193411 863 Gene3D G3DSA:1.25.40.10 647 847 2.1E-25 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6921 d734d573b85cb026e031473309193411 863 Gene3D G3DSA:3.40.50.300 226 331 2.0E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6921 d734d573b85cb026e031473309193411 863 SUPERFAMILY SSF52540 212 461 1.57E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6921 d734d573b85cb026e031473309193411 863 Pfam PF13424 Tetratricopeptide repeat 658 725 3.3E-12 T 19-04-2016 AMED_6921 d734d573b85cb026e031473309193411 863 PANTHER PTHR22845:SF4 207 805 2.7E-52 T 19-04-2016 AMED_6921 d734d573b85cb026e031473309193411 863 PRINTS PR00364 Disease resistance protein signature 236 251 5.1E-11 T 19-04-2016 AMED_6921 d734d573b85cb026e031473309193411 863 PRINTS PR00364 Disease resistance protein signature 399 413 5.1E-11 T 19-04-2016 AMED_6921 d734d573b85cb026e031473309193411 863 PRINTS PR00364 Disease resistance protein signature 312 326 5.1E-11 T 19-04-2016 AMED_6921 d734d573b85cb026e031473309193411 863 SUPERFAMILY SSF48452 647 845 1.14E-19 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6921 d734d573b85cb026e031473309193411 863 Pfam PF00931 NB-ARC domain 226 415 4.4E-14 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_6921 d734d573b85cb026e031473309193411 863 SMART SM00382 233 391 2.6E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6921 d734d573b85cb026e031473309193411 863 PANTHER PTHR22845 207 805 2.7E-52 T 19-04-2016 AMED_4725 77ffec00453c477bf2b91bda1df30ae8 221 Gene3D G3DSA:1.10.530.10 20 107 6.5E-30 T 19-04-2016 AMED_4725 77ffec00453c477bf2b91bda1df30ae8 221 Pfam PF06737 Transglycosylase-like domain 36 105 7.3E-21 T 19-04-2016 IPR010618 Transglycosylase-like AMED_4725 77ffec00453c477bf2b91bda1df30ae8 221 SUPERFAMILY SSF47090 146 213 1.46E-9 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_4725 77ffec00453c477bf2b91bda1df30ae8 221 Gene3D G3DSA:1.10.101.10 148 213 9.7E-9 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_4725 77ffec00453c477bf2b91bda1df30ae8 221 SUPERFAMILY SSF53955 35 108 2.16E-25 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_4725 77ffec00453c477bf2b91bda1df30ae8 221 Pfam PF01471 Putative peptidoglycan binding domain 163 213 1.2E-7 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3869 2fd4540cd58b055b1602364403b16737 153 Gene3D G3DSA:3.10.129.10 14 146 3.5E-36 T 19-04-2016 IPR029069 HotDog domain AMED_3869 2fd4540cd58b055b1602364403b16737 153 SUPERFAMILY SSF54637 9 147 3.32E-37 T 19-04-2016 IPR029069 HotDog domain AMED_3869 2fd4540cd58b055b1602364403b16737 153 PANTHER PTHR13078 6 144 2.1E-36 T 19-04-2016 AMED_3869 2fd4540cd58b055b1602364403b16737 153 Pfam PF01575 MaoC like domain 18 119 3.2E-27 T 19-04-2016 IPR002539 MaoC-like domain AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 SUPERFAMILY SSF52172 1 122 1.57E-37 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 PANTHER PTHR26402 2 230 1.8E-77 T 19-04-2016 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 SMART SM00448 2 113 9.7E-36 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 SMART SM00862 147 227 1.5E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 Gene3D G3DSA:1.10.10.10 126 230 6.3E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 PANTHER PTHR26402:SF50 2 230 1.8E-77 T 19-04-2016 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 Gene3D G3DSA:3.40.50.2300 3 120 9.1E-36 T 19-04-2016 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 227 2.7E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 Pfam PF00072 Response regulator receiver domain 5 113 4.4E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6941 dd3f1308052fe22e895dff2b5f815716 237 SUPERFAMILY SSF46894 126 228 2.15E-24 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 Pfam PF00255 Glutathione peroxidase 3 109 1.6E-39 T 19-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 PANTHER PTHR11592 3 160 1.0E-78 T 19-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 Gene3D G3DSA:3.40.30.10 3 160 2.2E-63 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1648 4b25d90ca08331ba5500f1526886096d 162 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.9E-19 T 19-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 PRINTS PR01011 Glutathione peroxidase family signature 122 131 1.9E-19 T 19-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.9E-19 T 19-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 19-04-2016 IPR029759 Glutathione peroxidase active site AMED_1648 4b25d90ca08331ba5500f1526886096d 162 SUPERFAMILY SSF52833 2 160 4.15E-55 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1648 4b25d90ca08331ba5500f1526886096d 162 PANTHER PTHR11592:SF40 3 160 1.0E-78 T 19-04-2016 AMED_1648 4b25d90ca08331ba5500f1526886096d 162 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 19-04-2016 IPR029760 Glutathione peroxidase conserved site AMED_1648 4b25d90ca08331ba5500f1526886096d 162 PIRSF PIRSF000303 1 162 2.0E-61 T 19-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 AMED_1251 76cb1490633193312daa4cc32099d701 229 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1251 76cb1490633193312daa4cc32099d701 229 SUPERFAMILY SSF52540 1 220 3.65E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1251 76cb1490633193312daa4cc32099d701 229 SMART SM00382 28 215 1.6E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1251 76cb1490633193312daa4cc32099d701 229 PANTHER PTHR24220:SF470 3 223 9.5E-115 T 19-04-2016 AMED_1251 76cb1490633193312daa4cc32099d701 229 Pfam PF00005 ABC transporter 19 166 5.5E-34 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1251 76cb1490633193312daa4cc32099d701 229 PANTHER PTHR24220 3 223 9.5E-115 T 19-04-2016 AMED_1251 76cb1490633193312daa4cc32099d701 229 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 3.1E-85 T 19-04-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 AMED_1251 76cb1490633193312daa4cc32099d701 229 Gene3D G3DSA:3.40.50.300 1 219 1.1E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 PANTHER PTHR10992 201 340 8.1E-44 T 19-04-2016 AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 PANTHER PTHR10992 41 117 8.1E-44 T 19-04-2016 AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 PANTHER PTHR10992:SF107 201 340 8.1E-44 T 19-04-2016 AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 SUPERFAMILY SSF53474 27 335 3.35E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 PANTHER PTHR10992 138 185 8.1E-44 T 19-04-2016 AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 Gene3D G3DSA:3.40.50.1820 20 338 1.1E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 Pfam PF12697 Alpha/beta hydrolase family 57 333 2.4E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 PANTHER PTHR10992:SF107 138 185 8.1E-44 T 19-04-2016 AMED_1117 aaa1f6df0cdb01b3217a3e9774dc6ba6 346 PANTHER PTHR10992:SF107 41 117 8.1E-44 T 19-04-2016 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 85 100 4.9E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 221 233 4.9E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 142 156 4.9E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 SUPERFAMILY SSF50494 46 276 3.5E-32 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 Gene3D G3DSA:2.40.10.10 93 275 8.5E-24 T 19-04-2016 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 SMART SM00020 48 271 1.8E-8 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 95 100 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 Gene3D G3DSA:2.40.10.10 62 92 1.9E-7 T 19-04-2016 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 PANTHER PTHR24256:SF137 84 275 1.6E-18 T 19-04-2016 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 Pfam PF00089 Trypsin 81 271 2.0E-23 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_3335 f079bcae9681b09a1a2a9ef82d356c1c 276 PANTHER PTHR24256 84 275 1.6E-18 T 19-04-2016 AMED_3863 ed46739fadb79599d864716227e3d78c 268 Gene3D G3DSA:3.90.226.10 5 259 4.2E-59 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3863 ed46739fadb79599d864716227e3d78c 268 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_3863 ed46739fadb79599d864716227e3d78c 268 PANTHER PTHR11941:SF15 1 262 1.5E-120 T 19-04-2016 AMED_3863 ed46739fadb79599d864716227e3d78c 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 263 1.4E-39 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3863 ed46739fadb79599d864716227e3d78c 268 PANTHER PTHR11941 1 262 1.5E-120 T 19-04-2016 AMED_3863 ed46739fadb79599d864716227e3d78c 268 SUPERFAMILY SSF52096 16 262 4.07E-63 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 PANTHER PTHR11014:SF106 8 259 1.2E-103 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 SUPERFAMILY SSF55031 290 325 1.28E-10 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 SUPERFAMILY SSF55031 204 246 1.28E-10 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Pfam PF07687 Peptidase dimerisation domain 201 323 5.7E-14 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 PANTHER PTHR11014 278 438 1.2E-103 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Gene3D G3DSA:3.40.630.10 11 213 9.2E-55 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Gene3D G3DSA:3.40.630.10 375 438 9.2E-55 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 PANTHER PTHR11014 8 259 1.2E-103 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 PANTHER PTHR11014:SF106 278 438 1.2E-103 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Pfam PF01546 Peptidase family M20/M25/M40 84 438 9.7E-35 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Gene3D G3DSA:3.30.70.360 214 254 3.9E-22 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 Gene3D G3DSA:3.30.70.360 291 336 3.9E-22 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 SUPERFAMILY SSF53187 6 204 2.2E-52 T 19-04-2016 AMED_4626 2b2cf38f8bdc19a2ac91b7afcc22b1db 440 SUPERFAMILY SSF53187 350 438 2.2E-52 T 19-04-2016 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 Gene3D G3DSA:1.50.10.10 43 410 2.3E-71 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 Gene3D G3DSA:2.60.40.290 510 610 6.1E-16 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 SUPERFAMILY SSF49384 507 606 5.79E-13 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 PRINTS PR00735 Glycosyl hydrolase family 8 signature 154 172 2.7E-11 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 PRINTS PR00735 Glycosyl hydrolase family 8 signature 91 104 2.7E-11 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 PRINTS PR00735 Glycosyl hydrolase family 8 signature 389 403 2.7E-11 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 SUPERFAMILY SSF48208 41 409 2.58E-55 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 SUPERFAMILY SSF49265 417 504 1.12E-13 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 Pfam PF00553 Cellulose binding domain 512 608 7.8E-10 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 Gene3D G3DSA:2.60.40.10 419 502 1.3E-15 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 Pfam PF01270 Glycosyl hydrolases family 8 45 278 1.0E-12 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 SMART SM00060 419 492 1.4E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5068 40dcbe57e1a0a8dc4228990697c07ebd 612 SMART SM00637 511 612 3.8E-4 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_2529 eb706e56ae2c837cc4fdde3e28adb7a2 338 PANTHER PTHR19353 2 331 7.2E-119 T 19-04-2016 AMED_2529 eb706e56ae2c837cc4fdde3e28adb7a2 338 PIRSF PIRSF015921 2 338 1.3E-71 T 19-04-2016 IPR012171 Fatty acid desaturase GO:0006629|GO:0016021|GO:0016491 AMED_2529 eb706e56ae2c837cc4fdde3e28adb7a2 338 PANTHER PTHR19353:SF34 2 331 7.2E-119 T 19-04-2016 AMED_2529 eb706e56ae2c837cc4fdde3e28adb7a2 338 Pfam PF00487 Fatty acid desaturase 56 314 1.2E-36 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 Pfam PF00970 Oxidoreductase FAD-binding domain 49 134 1.4E-8 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_2088 72f30be89db620c28d0eca4b945360e8 355 Pfam PF00175 Oxidoreductase NAD-binding domain 146 248 1.7E-15 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 69 81 3.8E-10 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 164 3.8E-10 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 PRINTS PR00410 Phenol hydroxylase reductase family signature 234 242 3.8E-10 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 Gene3D G3DSA:2.40.30.10 42 128 1.1E-19 T 19-04-2016 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 SUPERFAMILY SSF63380 41 136 1.62E-20 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 SUPERFAMILY SSF52343 125 253 3.27E-31 T 19-04-2016 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 SUPERFAMILY SSF54292 253 354 6.32E-16 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 Gene3D G3DSA:3.40.50.80 129 253 1.4E-30 T 19-04-2016 AMED_2088 72f30be89db620c28d0eca4b945360e8 355 Gene3D G3DSA:3.10.20.30 254 354 2.4E-18 T 19-04-2016 IPR012675 Beta-grasp domain AMED_2088 72f30be89db620c28d0eca4b945360e8 355 PANTHER PTHR19370 52 254 5.6E-38 T 19-04-2016 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 Pfam PF07690 Major Facilitator Superfamily 297 431 2.2E-9 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 SUPERFAMILY SSF103473 21 434 3.92E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 PANTHER PTHR23508:SF1 21 444 2.6E-154 T 19-04-2016 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 PANTHER PTHR23508 21 444 2.6E-154 T 19-04-2016 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 Gene3D G3DSA:1.20.1250.20 22 223 2.7E-19 T 19-04-2016 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 Gene3D G3DSA:1.20.1250.20 247 432 1.0E-21 T 19-04-2016 AMED_4674 da45a7b8f5df3b9bede1879cbc03de86 445 Pfam PF00083 Sugar (and other) transporter 25 236 3.6E-23 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_2011 4be0eeb1c69f7c8796a26fd4d4478476 360 SUPERFAMILY SSF110296 6 356 2.88E-60 T 19-04-2016 AMED_2011 4be0eeb1c69f7c8796a26fd4d4478476 360 Gene3D G3DSA:2.130.10.10 5 354 1.4E-81 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 Hamap MF_01694 Biotin synthase [bioB]. 31 352 37.643 T 19-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 SMART SM00876 259 351 8.2E-28 T 19-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 SUPERFAMILY SSF102114 46 334 1.83E-64 T 19-04-2016 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 Gene3D G3DSA:3.20.20.70 46 349 9.7E-80 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 Pfam PF04055 Radical SAM superfamily 90 246 6.6E-15 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 347 7.3E-12 T 19-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 PANTHER PTHR22976:SF1 1 347 1.0E-123 T 19-04-2016 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 SMART SM00729 83 288 3.9E-34 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 PANTHER PTHR22976 1 347 1.0E-123 T 19-04-2016 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 PIRSF PIRSF001619 28 357 1.7E-104 T 19-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_2218 2f788600ea9dcb7655b45699c63e8688 358 TIGRFAM TIGR00433 bioB: biotin synthase 55 349 5.0E-106 T 19-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_3848 f6b701a52163286cbdd0288932031b84 380 Gene3D G3DSA:1.20.140.10 220 378 4.2E-62 T 19-04-2016 AMED_3848 f6b701a52163286cbdd0288932031b84 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 1.5E-26 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 SUPERFAMILY SSF56645 5 242 3.27E-80 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 8.9E-44 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 Gene3D G3DSA:1.10.540.10 6 121 8.1E-31 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 119 4.1E-29 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 SUPERFAMILY SSF47203 228 378 4.19E-50 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3848 f6b701a52163286cbdd0288932031b84 380 PANTHER PTHR10909:SF190 3 378 4.4E-194 T 19-04-2016 AMED_3848 f6b701a52163286cbdd0288932031b84 380 Gene3D G3DSA:2.40.110.10 123 219 1.3E-40 T 19-04-2016 AMED_3848 f6b701a52163286cbdd0288932031b84 380 PANTHER PTHR10909 3 378 4.4E-194 T 19-04-2016 AMED_3848 f6b701a52163286cbdd0288932031b84 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_6796 53b56195407200eea412861c87cf5735 303 Gene3D G3DSA:3.40.190.10 104 172 1.3E-20 T 19-04-2016 AMED_6796 53b56195407200eea412861c87cf5735 303 SUPERFAMILY SSF53850 103 282 3.69E-27 T 19-04-2016 AMED_6796 53b56195407200eea412861c87cf5735 303 PANTHER PTHR30346:SF7 1 300 1.8E-91 T 19-04-2016 AMED_6796 53b56195407200eea412861c87cf5735 303 SUPERFAMILY SSF46785 3 85 2.03E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6796 53b56195407200eea412861c87cf5735 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.5E-11 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6796 53b56195407200eea412861c87cf5735 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.5E-11 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6796 53b56195407200eea412861c87cf5735 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.5E-11 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6796 53b56195407200eea412861c87cf5735 303 Gene3D G3DSA:1.10.10.10 2 84 3.4E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6796 53b56195407200eea412861c87cf5735 303 Gene3D G3DSA:3.40.190.10 173 250 2.1E-13 T 19-04-2016 AMED_6796 53b56195407200eea412861c87cf5735 303 PANTHER PTHR30346 1 300 1.8E-91 T 19-04-2016 AMED_6796 53b56195407200eea412861c87cf5735 303 Pfam PF03466 LysR substrate binding domain 102 279 7.3E-29 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6796 53b56195407200eea412861c87cf5735 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.2E-22 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3882 da89134162217fd93eb1e0ee39ddc6d5 168 PANTHER PTHR35176:SF3 1 158 1.9E-47 T 19-04-2016 AMED_3882 da89134162217fd93eb1e0ee39ddc6d5 168 PANTHER PTHR35176 1 158 1.9E-47 T 19-04-2016 AMED_3882 da89134162217fd93eb1e0ee39ddc6d5 168 SUPERFAMILY SSF50475 10 148 1.4E-36 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_3882 da89134162217fd93eb1e0ee39ddc6d5 168 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 15 99 4.9E-18 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_3882 da89134162217fd93eb1e0ee39ddc6d5 168 Gene3D G3DSA:2.30.110.10 11 149 2.4E-39 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_3882 da89134162217fd93eb1e0ee39ddc6d5 168 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 18 143 1.8E-29 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_4747 560c8a17e6e4040552a26d79251db512 273 Gene3D G3DSA:1.10.10.10 31 104 3.1E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4747 560c8a17e6e4040552a26d79251db512 273 SMART SM01043 113 257 2.5E-41 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4747 560c8a17e6e4040552a26d79251db512 273 SUPERFAMILY SSF48452 108 266 2.78E-33 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4747 560c8a17e6e4040552a26d79251db512 273 Gene3D G3DSA:1.25.40.10 203 235 1.3E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4747 560c8a17e6e4040552a26d79251db512 273 Gene3D G3DSA:1.25.40.10 115 147 1.3E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4747 560c8a17e6e4040552a26d79251db512 273 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 100 8.0E-6 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4747 560c8a17e6e4040552a26d79251db512 273 SUPERFAMILY SSF46894 20 104 1.79E-9 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4747 560c8a17e6e4040552a26d79251db512 273 PANTHER PTHR35807 18 259 5.1E-44 T 19-04-2016 AMED_4747 560c8a17e6e4040552a26d79251db512 273 Pfam PF03704 Bacterial transcriptional activator domain 113 257 6.4E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 7.9E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 7.9E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 7.9E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 Gene3D G3DSA:3.40.50.720 3 247 4.5E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PANTHER PTHR24322 7 133 6.7E-47 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PANTHER PTHR24322 149 180 6.7E-47 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.9E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.9E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.9E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.9E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.9E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 Pfam PF00106 short chain dehydrogenase 5 187 1.6E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 SUPERFAMILY SSF51735 3 247 2.42E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3879 9396441efbadf3ae1e5ffc9e6bb83d12 281 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 189 0.0049 T 19-04-2016 AMED_2774 35345ba61b183ac07aa96a7fea8c8b89 168 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 19 153 1.5E-41 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2774 35345ba61b183ac07aa96a7fea8c8b89 168 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 14 158 25.778 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2774 35345ba61b183ac07aa96a7fea8c8b89 168 PANTHER PTHR21058 1 164 2.3E-56 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2774 35345ba61b183ac07aa96a7fea8c8b89 168 SUPERFAMILY SSF52121 13 160 4.71E-50 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2774 35345ba61b183ac07aa96a7fea8c8b89 168 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 19 155 6.9E-48 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2774 35345ba61b183ac07aa96a7fea8c8b89 168 Gene3D G3DSA:3.40.50.960 14 159 1.4E-52 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 1.1E-7 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 Gene3D G3DSA:3.40.50.720 150 225 8.9E-11 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 PANTHER PTHR11695:SF294 16 302 1.3E-56 T 19-04-2016 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 SUPERFAMILY SSF51735 117 240 8.51E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 Pfam PF00107 Zinc-binding dehydrogenase 155 241 3.9E-9 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 SUPERFAMILY SSF50129 2 153 3.2E-31 T 19-04-2016 IPR011032 GroES-like AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 SMART SM00829 11 301 3.8E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 PANTHER PTHR11695 16 302 1.3E-56 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8639 7b6164911bdabd4c99eadc6baf5304e1 303 Gene3D G3DSA:3.90.180.10 3 149 9.7E-39 T 19-04-2016 IPR011032 GroES-like AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 PANTHER PTHR18919 1 382 2.0E-195 T 19-04-2016 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 Pfam PF02803 Thiolase, C-terminal domain 259 379 1.6E-39 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 SUPERFAMILY SSF53901 3 258 1.43E-74 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 Pfam PF00108 Thiolase, N-terminal domain 5 250 8.2E-70 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 Gene3D G3DSA:3.40.47.10 148 185 1.6E-48 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 Gene3D G3DSA:3.40.47.10 265 380 1.6E-48 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 ProSitePatterns PS00737 Thiolases signature 2. 327 343 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 PANTHER PTHR18919:SF71 1 382 2.0E-195 T 19-04-2016 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 Gene3D G3DSA:3.40.47.10 186 264 4.8E-70 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 Gene3D G3DSA:3.40.47.10 3 124 4.8E-70 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 PIRSF PIRSF000429 1 382 9.9E-123 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 SUPERFAMILY SSF53901 259 380 2.14E-38 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3855 482a511ff9a0499a161fe43ca68ac9e1 382 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 379 1.2E-132 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3737 fc88e6f67fdf87e9f29ef19af1f70a91 194 SUPERFAMILY SSF48498 94 191 2.04E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3737 fc88e6f67fdf87e9f29ef19af1f70a91 194 Gene3D G3DSA:1.10.357.10 94 192 1.9E-15 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3737 fc88e6f67fdf87e9f29ef19af1f70a91 194 PANTHER PTHR10283:SF67 29 96 8.4E-26 T 19-04-2016 AMED_3737 fc88e6f67fdf87e9f29ef19af1f70a91 194 Pfam PF13305 WHG domain 94 168 2.0E-17 T 19-04-2016 IPR025996 WHG domain AMED_3737 fc88e6f67fdf87e9f29ef19af1f70a91 194 Pfam PF03600 Citrate transporter 9 96 7.9E-13 T 19-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 AMED_3737 fc88e6f67fdf87e9f29ef19af1f70a91 194 PANTHER PTHR10283 29 96 8.4E-26 T 19-04-2016 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 PANTHER PTHR11638 7 850 0.0 T 19-04-2016 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 636 654 - T 19-04-2016 IPR028299 ClpA/B, conserved site 2 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 SUPERFAMILY SSF52540 551 851 5.63E-77 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 146 1.0E-13 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 65 1.5E-8 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 SUPERFAMILY SSF81923 7 157 5.98E-33 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 SUPERFAMILY SSF52540 158 550 4.66E-95 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 337 7.2E-12 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 7 850 0.0 T 19-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Gene3D G3DSA:3.40.50.300 561 780 1.9E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Gene3D G3DSA:1.10.8.60 781 850 1.2E-29 T 19-04-2016 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 SMART SM00382 199 346 2.3E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9155 513b15c816c074ac2f531ba213777bb5 865 SMART SM00382 602 752 1.5E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Gene3D G3DSA:1.10.8.60 347 430 4.4E-36 T 19-04-2016 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 PANTHER PTHR11638:SF120 7 850 0.0 T 19-04-2016 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Pfam PF07724 AAA domain (Cdc48 subfamily) 601 763 2.7E-53 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 SMART SM01086 769 862 1.1E-34 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMED_9155 513b15c816c074ac2f531ba213777bb5 865 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 297 309 - T 19-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Gene3D G3DSA:1.10.1780.10 2 148 1.2E-39 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Gene3D G3DSA:3.40.50.300 160 344 3.5E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9155 513b15c816c074ac2f531ba213777bb5 865 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 6.6E-27 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMED_9155 513b15c816c074ac2f531ba213777bb5 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 606 624 4.8E-42 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 651 669 4.8E-42 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 713 727 4.8E-42 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_9155 513b15c816c074ac2f531ba213777bb5 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 680 698 4.8E-42 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_5655 5b25e2901f6114fbc27a0afdba3fb33d 296 Pfam PF04203 Sortase family 91 194 5.1E-12 T 19-04-2016 IPR005754 Sortase family AMED_5655 5b25e2901f6114fbc27a0afdba3fb33d 296 Gene3D G3DSA:2.40.260.10 84 194 7.8E-12 T 19-04-2016 IPR023365 Sortase domain AMED_5655 5b25e2901f6114fbc27a0afdba3fb33d 296 SUPERFAMILY SSF63817 81 192 1.79E-14 T 19-04-2016 IPR023365 Sortase domain AMED_4813 6398116c2bdbac58fa0cf362cc1f1284 278 Pfam PF01457 Leishmanolysin 108 241 3.3E-11 T 19-04-2016 IPR001577 Peptidase M8, leishmanolysin GO:0004222|GO:0006508|GO:0007155|GO:0016020 AMED_4813 6398116c2bdbac58fa0cf362cc1f1284 278 Gene3D G3DSA:3.90.132.10 165 241 4.5E-10 T 19-04-2016 AMED_4813 6398116c2bdbac58fa0cf362cc1f1284 278 Gene3D G3DSA:3.40.390.10 12 143 2.0E-7 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_4813 6398116c2bdbac58fa0cf362cc1f1284 278 PANTHER PTHR10942:SF21 74 243 3.4E-40 T 19-04-2016 AMED_4813 6398116c2bdbac58fa0cf362cc1f1284 278 PANTHER PTHR10942 74 243 3.4E-40 T 19-04-2016 IPR001577 Peptidase M8, leishmanolysin GO:0004222|GO:0006508|GO:0007155|GO:0016020 AMED_4813 6398116c2bdbac58fa0cf362cc1f1284 278 SUPERFAMILY SSF55486 44 243 1.85E-33 T 19-04-2016 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 300 318 9.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 340 9.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 PRINTS PR00344 Bacterial sensor protein C-terminal signature 272 286 9.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 PANTHER PTHR34220:SF3 120 347 3.4E-55 T 19-04-2016 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 Gene3D G3DSA:3.30.565.10 198 341 2.1E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 Pfam PF06580 Histidine kinase 142 220 4.6E-20 T 19-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 SMART SM00387 235 343 0.0026 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 PANTHER PTHR34220 120 347 3.4E-55 T 19-04-2016 AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 SUPERFAMILY SSF55874 200 340 1.7E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1589 158e8d31cc93d9f0ddb37591f4bb4966 348 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 239 341 1.2E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4427 f575972fab86833c398bbbff83808a32 327 Gene3D G3DSA:3.40.50.2300 173 303 1.0E-40 T 19-04-2016 AMED_4427 f575972fab86833c398bbbff83808a32 327 PANTHER PTHR30146 2 327 4.3E-92 T 19-04-2016 AMED_4427 f575972fab86833c398bbbff83808a32 327 SMART SM00354 2 72 8.8E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4427 f575972fab86833c398bbbff83808a32 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 47 7.7E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4427 f575972fab86833c398bbbff83808a32 327 SUPERFAMILY SSF47413 3 48 7.13E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4427 f575972fab86833c398bbbff83808a32 327 Gene3D G3DSA:1.10.260.40 3 47 7.9E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4427 f575972fab86833c398bbbff83808a32 327 Gene3D G3DSA:3.40.50.2300 59 172 1.5E-33 T 19-04-2016 AMED_4427 f575972fab86833c398bbbff83808a32 327 SUPERFAMILY SSF53822 63 325 9.6E-61 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4427 f575972fab86833c398bbbff83808a32 327 Pfam PF13377 Periplasmic binding protein-like domain 165 322 2.3E-35 T 19-04-2016 AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 5 180 5.5E-56 T 19-04-2016 IPR010195 Uncharacterised peroxidase-related AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 PANTHER PTHR35446:SF2 4 190 6.3E-77 T 19-04-2016 AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 Pfam PF02627 Carboxymuconolactone decarboxylase family 44 99 8.2E-13 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 PANTHER PTHR35446 4 190 6.3E-77 T 19-04-2016 AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 Gene3D G3DSA:1.20.5.810 11 62 2.2E-25 T 19-04-2016 AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 SUPERFAMILY SSF69118 4 188 1.55E-52 T 19-04-2016 IPR029032 AhpD-like AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 Gene3D G3DSA:1.20.1290.10 63 182 1.1E-29 T 19-04-2016 IPR029032 AhpD-like AMED_9241 2dc1cf6640ae453f51d3263738a83f4f 190 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 63 105 4.1E-12 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 Gene3D G3DSA:1.10.630.10 20 409 2.4E-105 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 Pfam PF00067 Cytochrome P450 177 378 2.4E-22 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 351 360 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PANTHER PTHR11712 35 409 7.9E-77 T 19-04-2016 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 145 161 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 349 358 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 282 293 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 162 177 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 199 221 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 358 369 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 328 343 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 300 327 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00359 B-class P450 signature 98 109 3.2E-51 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 349 358 4.9E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 358 369 4.9E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 282 293 4.9E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 PRINTS PR00385 P450 superfamily signature 244 261 4.9E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7141 c8b17d319c849a822f9de041c31eb825 409 SUPERFAMILY SSF48264 22 409 1.83E-81 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 SUPERFAMILY SSF47203 230 375 3.62E-18 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 Gene3D G3DSA:1.20.140.10 220 378 3.8E-22 T 19-04-2016 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 119 3.3E-18 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 373 5.6E-21 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 Gene3D G3DSA:2.40.110.10 123 219 5.7E-33 T 19-04-2016 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 Gene3D G3DSA:1.10.540.10 5 120 8.4E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 PANTHER PTHR10909:SF229 2 380 5.5E-136 T 19-04-2016 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 217 1.1E-23 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 SUPERFAMILY SSF56645 6 241 1.96E-65 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3384 4854f2829ef02b951c81fa00d88ddce4 381 PANTHER PTHR10909 2 380 5.5E-136 T 19-04-2016 AMED_3755 1500dd48c848124e43ff0cc628c4d272 485 SUPERFAMILY SSF48317 11 484 4.58E-119 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3755 1500dd48c848124e43ff0cc628c4d272 485 Gene3D G3DSA:1.10.606.10 2 485 1.3E-189 T 19-04-2016 IPR016119 Bromoperoxidase/chloroperoxidase, C-terminal GO:0004601|GO:0055114 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 Gene3D G3DSA:2.60.40.1190 858 1083 1.7E-53 T 19-04-2016 IPR010502 Carbohydrate-binding domain, family 9 GO:0004553|GO:0016052|GO:0030246 MetaCyc: PWY-6784 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 PANTHER PTHR36306 859 1038 1.5E-17 T 19-04-2016 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 SUPERFAMILY SSF48208 320 758 7.37E-62 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 Pfam PF09985 C-terminal binding-module, SLH-like, of glucodextranase 861 1076 3.8E-38 T 19-04-2016 IPR019248 Glucodextranase-like, C-terminal AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 Gene3D G3DSA:1.50.10.10 324 763 2.0E-115 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 Gene3D G3DSA:2.70.98.10 28 311 2.2E-72 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 Pfam PF09137 Glucodextranase, domain N 33 312 1.4E-74 T 19-04-2016 IPR015220 Glucodextranase N KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 SUPERFAMILY SSF49344 860 1081 3.81E-33 T 19-04-2016 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 SUPERFAMILY SSF74650 26 315 1.0E-55 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 PANTHER PTHR36306:SF1 859 1038 1.5E-17 T 19-04-2016 AMED_5895 b85762a94760a3a911414272fd5c7f15 1089 Pfam PF00723 Glycosyl hydrolases family 15 429 621 1.6E-15 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_2544 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 65 103 1.6E-12 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_2544 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 183 222 6.2E-12 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_2544 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 242 282 3.6E-12 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_2544 3f175d479a77ee3512056f296a9b1051 308 Pfam PF03640 Secreted repeat of unknown function 121 161 2.9E-10 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_2544 3f175d479a77ee3512056f296a9b1051 308 PANTHER PTHR39335 1 297 7.1E-40 T 19-04-2016 AMED_1739 6384768aa972c37d79da1073e47350f4 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 472 4.6E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1739 6384768aa972c37d79da1073e47350f4 473 Gene3D G3DSA:3.30.565.10 304 472 1.6E-44 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1739 6384768aa972c37d79da1073e47350f4 473 Pfam PF00672 HAMP domain 166 238 4.8E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_1739 6384768aa972c37d79da1073e47350f4 473 Gene3D G3DSA:1.10.287.130 246 303 8.4E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1739 6384768aa972c37d79da1073e47350f4 473 SMART SM00387 362 473 9.5E-42 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1739 6384768aa972c37d79da1073e47350f4 473 PANTHER PTHR24423 101 154 5.8E-78 T 19-04-2016 AMED_1739 6384768aa972c37d79da1073e47350f4 473 PANTHER PTHR24423 223 473 5.8E-78 T 19-04-2016 AMED_1739 6384768aa972c37d79da1073e47350f4 473 SUPERFAMILY SSF55874 307 471 8.12E-41 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1739 6384768aa972c37d79da1073e47350f4 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 2.0E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1739 6384768aa972c37d79da1073e47350f4 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 470 2.0E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1739 6384768aa972c37d79da1073e47350f4 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 2.0E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1739 6384768aa972c37d79da1073e47350f4 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 427 2.0E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1739 6384768aa972c37d79da1073e47350f4 473 SUPERFAMILY SSF47384 240 317 1.35E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1739 6384768aa972c37d79da1073e47350f4 473 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 317 1.1E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_1739 6384768aa972c37d79da1073e47350f4 473 SMART SM00304 184 243 2.5E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_1739 6384768aa972c37d79da1073e47350f4 473 SMART SM00388 251 318 2.9E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 PANTHER PTHR30157 1 246 1.5E-92 T 19-04-2016 AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 Pfam PF08021 Siderophore-interacting FAD-binding domain 1 115 4.2E-33 T 19-04-2016 IPR013113 FAD-binding 9, siderophore-interacting AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 Gene3D G3DSA:2.40.30.10 1 114 2.7E-29 T 19-04-2016 AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 Gene3D G3DSA:3.40.50.80 117 250 2.4E-46 T 19-04-2016 AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 SUPERFAMILY SSF63380 1 115 1.28E-8 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 PANTHER PTHR30157:SF1 1 246 1.5E-92 T 19-04-2016 AMED_6649 1c5cf7feb47edd0e0d046ec3f7766405 254 Pfam PF04954 Siderophore-interacting protein 122 236 5.9E-35 T 19-04-2016 IPR007037 Siderophore-interacting protein AMED_5750 9357250a11a5e027708cc30a15955eb5 148 PANTHER PTHR11911 6 38 4.3E-20 T 19-04-2016 AMED_5750 9357250a11a5e027708cc30a15955eb5 148 PANTHER PTHR11911 60 141 4.3E-20 T 19-04-2016 AMED_5750 9357250a11a5e027708cc30a15955eb5 148 Gene3D G3DSA:3.10.580.10 6 143 1.1E-10 T 19-04-2016 AMED_5750 9357250a11a5e027708cc30a15955eb5 148 SUPERFAMILY SSF54631 6 143 1.08E-12 T 19-04-2016 AMED_5750 9357250a11a5e027708cc30a15955eb5 148 Pfam PF00571 CBS domain 97 143 1.7E-4 T 19-04-2016 IPR000644 CBS domain AMED_5750 9357250a11a5e027708cc30a15955eb5 148 PANTHER PTHR11911:SF77 6 38 4.3E-20 T 19-04-2016 AMED_5750 9357250a11a5e027708cc30a15955eb5 148 PANTHER PTHR11911:SF77 60 141 4.3E-20 T 19-04-2016 AMED_8087 1d1865043bcdbc10dc3b908397afea12 455 TIGRFAM TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1 2 448 1.8E-198 T 19-04-2016 IPR024026 3'-RNA ribose 2'-O-methyltransferase, Hen1, bacterial AMED_8087 1d1865043bcdbc10dc3b908397afea12 455 SUPERFAMILY SSF53335 267 417 8.96E-23 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8087 1d1865043bcdbc10dc3b908397afea12 455 Pfam PF13489 Methyltransferase domain 244 415 5.7E-13 T 19-04-2016 AMED_8087 1d1865043bcdbc10dc3b908397afea12 455 PANTHER PTHR21404 2 447 1.4E-72 T 19-04-2016 IPR026610 3'-RNA ribose 2'-O-methyltransferase, Hen1 GO:0001510|GO:0008171|GO:0008173 AMED_8087 1d1865043bcdbc10dc3b908397afea12 455 Gene3D G3DSA:3.40.50.150 261 427 6.6E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8087 1d1865043bcdbc10dc3b908397afea12 455 Pfam PF12623 RNA repair, ligase-Pnkp-associating, region of Hen1 1 237 2.6E-109 T 19-04-2016 IPR024740 Hen1, N-terminal AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 Gene3D G3DSA:3.80.30.20 153 381 3.1E-80 T 19-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 155 175 - T 19-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 Pfam PF04055 Radical SAM superfamily 155 326 4.5E-28 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 PANTHER PTHR11918 8 446 2.0E-163 T 19-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 10 446 1.5E-143 T 19-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 10 419 8.2E-135 T 19-04-2016 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 8 452 64.717 T 19-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 Pfam PF00919 Uncharacterized protein family UPF0004 11 108 6.2E-27 T 19-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 PANTHER PTHR11918:SF43 8 446 2.0E-163 T 19-04-2016 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 SMART SM00729 151 369 1.0E-53 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_2380 8814d1a483a6da1b19376aa2f784bb68 497 SUPERFAMILY SSF102114 137 377 2.35E-56 T 19-04-2016 AMED_8346 a72abcab3a9fadd0e6cda8ccee3dadaf 232 SUPERFAMILY SSF102215 9 227 1.57E-54 T 19-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_8346 a72abcab3a9fadd0e6cda8ccee3dadaf 232 PANTHER PTHR35005:SF1 11 223 4.5E-43 T 19-04-2016 AMED_8346 a72abcab3a9fadd0e6cda8ccee3dadaf 232 Pfam PF02633 Creatinine amidohydrolase 12 225 8.5E-56 T 19-04-2016 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_8346 a72abcab3a9fadd0e6cda8ccee3dadaf 232 PANTHER PTHR35005 11 223 4.5E-43 T 19-04-2016 AMED_8346 a72abcab3a9fadd0e6cda8ccee3dadaf 232 Gene3D G3DSA:3.40.50.10310 14 228 3.4E-59 T 19-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_3150 0572cc967507dd859567ba584a22f861 279 PANTHER PTHR35807 9 240 1.1E-34 T 19-04-2016 AMED_3150 0572cc967507dd859567ba584a22f861 279 Pfam PF03704 Bacterial transcriptional activator domain 93 232 2.1E-18 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3150 0572cc967507dd859567ba584a22f861 279 SUPERFAMILY SSF46894 9 86 5.67E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3150 0572cc967507dd859567ba584a22f861 279 SUPERFAMILY SSF48452 90 246 1.36E-22 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3150 0572cc967507dd859567ba584a22f861 279 Gene3D G3DSA:1.10.10.10 13 88 8.3E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3150 0572cc967507dd859567ba584a22f861 279 Pfam PF00486 Transcriptional regulatory protein, C terminal 13 85 1.4E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3150 0572cc967507dd859567ba584a22f861 279 SMART SM00862 6 86 2.0E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3150 0572cc967507dd859567ba584a22f861 279 SMART SM01043 93 237 3.4E-28 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3150 0572cc967507dd859567ba584a22f861 279 Gene3D G3DSA:1.25.40.10 97 215 5.2E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1640 e905e626b7de7a298ca345ac5fa0ab9f 516 SUPERFAMILY SSF52025 67 130 9.29E-6 T 19-04-2016 AMED_1640 e905e626b7de7a298ca345ac5fa0ab9f 516 Gene3D G3DSA:3.50.30.30 70 130 4.5E-4 T 19-04-2016 AMED_1640 e905e626b7de7a298ca345ac5fa0ab9f 516 Gene3D G3DSA:2.120.10.10 395 504 3.6E-4 T 19-04-2016 IPR011040 Sialidases AMED_5919 3286a2f478e75a455772ad635d0858d4 145 SUPERFAMILY SSF141523 38 143 5.36E-20 T 19-04-2016 AMED_5919 3286a2f478e75a455772ad635d0858d4 145 Gene3D G3DSA:2.40.440.10 37 144 2.6E-12 T 19-04-2016 AMED_5919 3286a2f478e75a455772ad635d0858d4 145 Pfam PF03734 L,D-transpeptidase catalytic domain 40 143 5.5E-13 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_5919 3286a2f478e75a455772ad635d0858d4 145 PANTHER PTHR30582 61 145 5.5E-17 T 19-04-2016 AMED_5919 3286a2f478e75a455772ad635d0858d4 145 PANTHER PTHR30582:SF2 61 145 5.5E-17 T 19-04-2016 AMED_3986 dc97205b02e5e7dcb92089d03581f9fd 186 PANTHER PTHR38011 2 186 6.2E-21 T 19-04-2016 AMED_3986 dc97205b02e5e7dcb92089d03581f9fd 186 Pfam PF01872 RibD C-terminal domain 3 178 4.7E-17 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_3986 dc97205b02e5e7dcb92089d03581f9fd 186 Gene3D G3DSA:3.40.430.10 3 185 2.3E-27 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_3986 dc97205b02e5e7dcb92089d03581f9fd 186 SUPERFAMILY SSF53597 1 184 9.03E-28 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_3986 dc97205b02e5e7dcb92089d03581f9fd 186 PANTHER PTHR38011:SF2 2 186 6.2E-21 T 19-04-2016 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 PANTHER PTHR11911:SF6 309 500 1.2E-217 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 PANTHER PTHR11911:SF6 1 291 1.2E-217 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 18 502 82.113 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 305 317 - T 19-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 PIRSF PIRSF000130 10 503 4.3E-197 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 PANTHER PTHR11911 309 500 1.2E-217 T 19-04-2016 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 PANTHER PTHR11911 1 291 1.2E-217 T 19-04-2016 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 Pfam PF00571 CBS domain 159 212 4.6E-7 T 19-04-2016 IPR000644 CBS domain AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 Pfam PF00571 CBS domain 103 151 2.0E-7 T 19-04-2016 IPR000644 CBS domain AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 SUPERFAMILY SSF51412 13 100 1.96E-114 T 19-04-2016 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 SUPERFAMILY SSF51412 226 493 1.96E-114 T 19-04-2016 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 SMART SM00116 106 154 2.3E-6 T 19-04-2016 IPR000644 CBS domain AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 SMART SM00116 167 215 3.2E-6 T 19-04-2016 IPR000644 CBS domain AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 18 489 2.2E-151 T 19-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 SUPERFAMILY SSF54631 103 213 1.77E-29 T 19-04-2016 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 Gene3D G3DSA:3.20.20.70 14 501 4.3E-189 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 18 472 1.1E-179 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMED_0771 ed6183303138eaa069a4d60de368f4d1 503 SMART SM01240 17 489 1.3E-300 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Gene3D G3DSA:3.40.50.980 273 431 8.9E-26 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 SUPERFAMILY SSF56801 29 649 5.1E-171 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 33 85 1.4E-22 T 19-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 13 653 50.319 T 19-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Gene3D G3DSA:3.30.300.30 526 634 7.0E-29 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 PANTHER PTHR24095 33 649 1.6E-263 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Gene3D G3DSA:3.40.50.980 83 272 6.9E-39 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Pfam PF00501 AMP-binding enzyme 92 531 1.9E-89 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 ProSitePatterns PS00455 Putative AMP-binding domain signature. 267 278 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Gene3D G3DSA:2.30.38.10 447 524 6.3E-11 T 19-04-2016 AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 Pfam PF13193 AMP-binding enzyme C-terminal domain 540 619 1.4E-27 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_8817 fdb1c49dd7c2d7643d748e1552d3053d 660 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 27 650 8.4E-288 T 19-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 Gene3D G3DSA:3.30.379.10 2 103 1.0E-14 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_3314 ea36938e31094ac702f87928cc7541cb 496 SUPERFAMILY SSF51445 108 464 1.14E-105 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PANTHER PTHR22600:SF21 183 475 3.8E-165 T 19-04-2016 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PANTHER PTHR22600:SF21 59 166 3.8E-165 T 19-04-2016 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 Gene3D G3DSA:3.20.20.80 104 475 1.3E-112 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 49 103 3.9E-9 T 19-04-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 SUPERFAMILY SSF55545 2 105 1.96E-15 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_3314 ea36938e31094ac702f87928cc7541cb 496 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 108 452 7.2E-100 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PANTHER PTHR22600 183 475 3.8E-165 T 19-04-2016 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PANTHER PTHR22600 59 166 3.8E-165 T 19-04-2016 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 71 91 1.7E-35 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 270 283 1.7E-35 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 129 150 1.7E-35 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 434 451 1.7E-35 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 200 217 1.7E-35 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3314 ea36938e31094ac702f87928cc7541cb 496 PRINTS PR00738 Glycosyl hydrolase family 20 signature 416 432 1.7E-35 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_7679 1d2394220ce6434b015c69219de32994 139 Gene3D G3DSA:3.30.450.30 6 127 8.5E-32 T 19-04-2016 AMED_7679 1d2394220ce6434b015c69219de32994 139 PANTHER PTHR36222 1 139 3.4E-49 T 19-04-2016 AMED_7679 1d2394220ce6434b015c69219de32994 139 SMART SM00960 10 100 5.0E-31 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_7679 1d2394220ce6434b015c69219de32994 139 Pfam PF03259 Roadblock/LC7 domain 9 100 9.5E-26 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_7679 1d2394220ce6434b015c69219de32994 139 SUPERFAMILY SSF103196 3 129 3.14E-38 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 SUPERFAMILY SSF48557 45 230 9.9E-45 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_0321 20a9296933558098fc3f93988f332706 556 Gene3D G3DSA:1.10.40.30 466 546 2.3E-24 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 Gene3D G3DSA:1.20.200.10 130 231 1.0E-93 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 Gene3D G3DSA:1.20.200.10 314 464 1.0E-93 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 Gene3D G3DSA:1.10.275.10 37 129 6.0E-29 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_0321 20a9296933558098fc3f93988f332706 556 SUPERFAMILY SSF48557 305 546 9.74E-53 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_0321 20a9296933558098fc3f93988f332706 556 Pfam PF00206 Lyase 54 227 7.9E-21 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_0321 20a9296933558098fc3f93988f332706 556 Pfam PF00206 Lyase 311 402 4.1E-15 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_0321 20a9296933558098fc3f93988f332706 556 PRINTS PR00149 Fumarate lyase superfamily signature 170 188 9.9E-7 T 19-04-2016 IPR000362 Fumarate lyase family AMED_0321 20a9296933558098fc3f93988f332706 556 PRINTS PR00149 Fumarate lyase superfamily signature 125 143 9.9E-7 T 19-04-2016 IPR000362 Fumarate lyase family AMED_0321 20a9296933558098fc3f93988f332706 556 Pfam PF10397 Adenylosuccinate lyase C-terminus 468 545 3.6E-15 T 19-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMED_0321 20a9296933558098fc3f93988f332706 556 PANTHER PTHR11444 323 546 2.2E-127 T 19-04-2016 IPR000362 Fumarate lyase family AMED_0321 20a9296933558098fc3f93988f332706 556 PANTHER PTHR11444 245 265 2.2E-127 T 19-04-2016 IPR000362 Fumarate lyase family AMED_0321 20a9296933558098fc3f93988f332706 556 PANTHER PTHR11444 46 227 2.2E-127 T 19-04-2016 IPR000362 Fumarate lyase family AMED_0321 20a9296933558098fc3f93988f332706 556 PANTHER PTHR11444:SF21 323 546 2.2E-127 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 PANTHER PTHR11444:SF21 245 265 2.2E-127 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 PANTHER PTHR11444:SF21 46 227 2.2E-127 T 19-04-2016 AMED_0321 20a9296933558098fc3f93988f332706 556 SMART SM00998 467 546 1.4E-20 T 19-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMED_0321 20a9296933558098fc3f93988f332706 556 ProSitePatterns PS00163 Fumarate lyases signature. 379 388 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMED_8877 079fc1f14d003d0328a2cf36f4f293a3 382 Pfam PF07690 Major Facilitator Superfamily 2 245 1.5E-14 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8877 079fc1f14d003d0328a2cf36f4f293a3 382 SUPERFAMILY SSF103473 1 365 2.35E-31 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8877 079fc1f14d003d0328a2cf36f4f293a3 382 PANTHER PTHR23542:SF1 1 376 4.6E-19 T 19-04-2016 AMED_8877 079fc1f14d003d0328a2cf36f4f293a3 382 PANTHER PTHR23542 1 376 4.6E-19 T 19-04-2016 AMED_8877 079fc1f14d003d0328a2cf36f4f293a3 382 Gene3D G3DSA:1.20.1250.20 2 171 8.2E-12 T 19-04-2016 AMED_8877 079fc1f14d003d0328a2cf36f4f293a3 382 Gene3D G3DSA:1.20.1250.20 230 366 6.5E-13 T 19-04-2016 AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 Gene3D G3DSA:3.90.1580.10 170 439 1.1E-75 T 19-04-2016 IPR005532 Sulfatase-modifying factor enzyme AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 PANTHER PTHR23150 14 439 7.0E-105 T 19-04-2016 AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 SUPERFAMILY SSF56436 181 439 2.07E-74 T 19-04-2016 IPR016187 C-type lectin fold AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 Hamap MF_02035 Hercynine oxygenase [egtB]. 1 439 51.779 T 19-04-2016 IPR032890 Hercynine oxygenase, Actinobacteria GO:0016491|GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255|UniPathway: UPA01014 AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 Gene3D G3DSA:1.20.120.450 14 127 1.6E-6 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 19 436 6.9E-133 T 19-04-2016 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255|UniPathway: UPA01014 AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 SUPERFAMILY SSF109854 13 148 2.62E-19 T 19-04-2016 AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 PANTHER PTHR23150:SF24 14 439 7.0E-105 T 19-04-2016 AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 Pfam PF12867 DinB superfamily 21 152 2.0E-24 T 19-04-2016 IPR024775 DinB-like domain AMED_4963 0de7bedb81ea7ee07ce22fa305a9acc2 445 Pfam PF03781 Sulfatase-modifying factor enzyme 1 178 437 3.4E-64 T 19-04-2016 IPR005532 Sulfatase-modifying factor enzyme AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 ProSitePatterns PS01047 Heavy-metal-associated domain. 2 30 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF56784 421 441 6.05E-52 T 19-04-2016 IPR023214 HAD-like domain AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF56784 480 723 6.05E-52 T 19-04-2016 IPR023214 HAD-like domain AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Pfam PF00702 haloacid dehalogenase-like hydrolase 419 637 3.2E-46 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PANTHER PTHR24093 2 729 1.2E-225 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PANTHER PTHR24093:SF50 2 729 1.2E-225 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.40.50.1000 551 691 6.9E-48 T 19-04-2016 IPR023214 HAD-like domain AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.40.50.1000 395 439 6.9E-48 T 19-04-2016 IPR023214 HAD-like domain AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 188 725 5.0E-149 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 423 437 1.2E-21 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 570 580 1.2E-21 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 273 287 1.2E-21 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 623 642 1.2E-21 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 658 1.2E-21 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF55008 2 62 1.44E-16 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.40.1110.10 440 550 3.9E-19 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Pfam PF00403 Heavy-metal-associated domain 2 58 4.0E-12 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 425 431 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF81665 324 417 6.15E-13 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF81665 183 224 6.15E-13 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF81665 672 698 6.15E-13 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 197 706 8.7E-84 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Pfam PF00122 E1-E2 ATPase 196 414 4.6E-62 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:3.30.70.100 2 60 7.1E-21 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 623 639 2.8E-8 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 654 679 2.8E-8 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 595 611 2.8E-8 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 142 725 1.6E-169 T 19-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 SUPERFAMILY SSF81653 228 323 2.88E-22 T 19-04-2016 AMED_6527 2ff274a5f2ac6be0c35560fe1d81bbc0 742 Gene3D G3DSA:2.70.150.10 188 324 2.1E-24 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_4086 12aa667196b7895739a424a637befe35 313 SUPERFAMILY SSF161098 76 302 6.67E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4086 12aa667196b7895739a424a637befe35 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 307 6.7E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4086 12aa667196b7895739a424a637befe35 313 Gene3D G3DSA:1.10.3720.10 20 305 2.8E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4086 12aa667196b7895739a424a637befe35 313 PANTHER PTHR30193 3 310 2.0E-68 T 19-04-2016 AMED_4086 12aa667196b7895739a424a637befe35 313 PANTHER PTHR30193:SF6 3 310 2.0E-68 T 19-04-2016 AMED_8602 d552e1fd5a381f875addb2cb240b8844 260 Pfam PF14337 Domain of unknown function (DUF4393) 105 255 1.0E-12 T 19-04-2016 IPR025506 Protein of unknown function DUF4393 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Pfam PF01266 FAD dependent oxidoreductase 6 256 3.2E-27 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_7998 717caa308cc72b32983fe55f02006d13 683 PANTHER PTHR13847 6 370 5.3E-73 T 19-04-2016 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.30.1360.120 482 566 5.2E-11 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.30.1360.120 346 411 1.5E-12 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.50.50.60 280 344 1.3E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.50.50.60 130 201 1.3E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.50.50.60 3 68 1.3E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7998 717caa308cc72b32983fe55f02006d13 683 SUPERFAMILY SSF51905 5 209 7.45E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7998 717caa308cc72b32983fe55f02006d13 683 SUPERFAMILY SSF51905 280 336 7.45E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7998 717caa308cc72b32983fe55f02006d13 683 SUPERFAMILY SSF103025 344 604 5.81E-67 T 19-04-2016 AMED_7998 717caa308cc72b32983fe55f02006d13 683 SUPERFAMILY SSF54373 203 258 3.92E-10 T 19-04-2016 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.30.9.10 202 260 3.0E-33 T 19-04-2016 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.30.9.10 77 129 3.0E-33 T 19-04-2016 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:2.40.30.110 612 682 6.8E-17 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 596 682 7.5E-17 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_7998 717caa308cc72b32983fe55f02006d13 683 Pfam PF01571 Aminomethyltransferase folate-binding domain 351 587 5.5E-54 T 19-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal AMED_7998 717caa308cc72b32983fe55f02006d13 683 Gene3D G3DSA:3.30.70.1400 412 471 1.1E-13 T 19-04-2016 AMED_7998 717caa308cc72b32983fe55f02006d13 683 SUPERFAMILY SSF101790 619 682 1.11E-14 T 19-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AMED_7998 717caa308cc72b32983fe55f02006d13 683 PANTHER PTHR13847:SF181 6 370 5.3E-73 T 19-04-2016 AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 SUPERFAMILY SSF52540 15 234 8.12E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 PANTHER PTHR24220 17 234 3.4E-80 T 19-04-2016 AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 SMART SM00382 41 245 5.8E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 PANTHER PTHR24220:SF589 17 234 3.4E-80 T 19-04-2016 AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 Gene3D G3DSA:3.40.50.300 14 220 2.5E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1996 e7a7e165f1c4a30f7dbf737f364a6f1a 255 Pfam PF00005 ABC transporter 34 164 9.9E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 Gene3D G3DSA:1.10.287.130 113 173 9.6E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 SMART SM00388 121 188 5.9E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 SMART SM00387 233 348 4.0E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8321 c02526aeffdadfbe62f5856472b39622 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 121 188 6.7E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 284 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 327 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 332 345 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 SUPERFAMILY SSF55874 178 346 3.27E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8321 c02526aeffdadfbe62f5856472b39622 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 236 347 2.0E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8321 c02526aeffdadfbe62f5856472b39622 349 PANTHER PTHR24423 109 349 1.0E-61 T 19-04-2016 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 SUPERFAMILY SSF47384 109 188 3.53E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8321 c02526aeffdadfbe62f5856472b39622 349 Gene3D G3DSA:3.30.565.10 174 347 1.5E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3602 ccc3be92f088365436febeec16056d3a 224 Gene3D G3DSA:1.10.357.10 73 212 3.0E-19 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3602 ccc3be92f088365436febeec16056d3a 224 PANTHER PTHR30328:SF6 2 212 1.3E-13 T 19-04-2016 AMED_3602 ccc3be92f088365436febeec16056d3a 224 PANTHER PTHR30328 2 212 1.3E-13 T 19-04-2016 AMED_3602 ccc3be92f088365436febeec16056d3a 224 Pfam PF13305 WHG domain 107 193 7.4E-16 T 19-04-2016 IPR025996 WHG domain AMED_3602 ccc3be92f088365436febeec16056d3a 224 Gene3D G3DSA:1.10.10.60 11 72 1.2E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3602 ccc3be92f088365436febeec16056d3a 224 SUPERFAMILY SSF46689 15 86 3.95E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3602 ccc3be92f088365436febeec16056d3a 224 SUPERFAMILY SSF48498 104 211 1.78E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3602 ccc3be92f088365436febeec16056d3a 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 5.7E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0336 61466a5837fe8038a9756515ff484014 855 PANTHER PTHR24362:SF160 224 407 2.2E-25 T 19-04-2016 AMED_0336 61466a5837fe8038a9756515ff484014 855 SUPERFAMILY SSF158745 517 839 2.35E-17 T 19-04-2016 AMED_0336 61466a5837fe8038a9756515ff484014 855 SMART SM01260 522 844 0.0014 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_0336 61466a5837fe8038a9756515ff484014 855 Pfam PF00069 Protein kinase domain 245 407 2.6E-12 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0336 61466a5837fe8038a9756515ff484014 855 Gene3D G3DSA:1.10.510.10 315 408 3.4E-11 T 19-04-2016 AMED_0336 61466a5837fe8038a9756515ff484014 855 Gene3D G3DSA:3.30.200.20 225 314 2.8E-4 T 19-04-2016 AMED_0336 61466a5837fe8038a9756515ff484014 855 SMART SM00220 225 514 1.3E-5 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0336 61466a5837fe8038a9756515ff484014 855 SUPERFAMILY SSF56112 225 433 3.78E-24 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0336 61466a5837fe8038a9756515ff484014 855 PANTHER PTHR24362 224 407 2.2E-25 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00668 Condensation domain 1398 1666 2.1E-11 T 19-04-2016 IPR001242 Condensation domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00668 Condensation domain 813 1110 3.2E-64 T 19-04-2016 IPR001242 Condensation domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF47336 722 826 5.23E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 1563 1788 9.12E-11 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF53901 2 358 1.74E-70 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 240 3.0E-59 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF47336 1280 1347 7.72E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SMART SM00823 Phosphopantetheine attachment site 1284 1353 0.063 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SMART SM00823 Phosphopantetheine attachment site 724 793 0.0074 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 1387 1557 1.11E-18 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 PANTHER PTHR11712:SF288 3 517 5.0E-147 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 816 992 2.52E-51 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 PANTHER PTHR11712 3 517 5.0E-147 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SUPERFAMILY SSF52777 999 1247 1.89E-51 T 19-04-2016 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1309 1324 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:1.10.1200.10 721 794 1.2E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:1.10.1200.10 1278 1348 5.6E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 371 479 1.3E-12 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00550 Phosphopantetheine attachment site 726 789 7.0E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF00550 Phosphopantetheine attachment site 1288 1348 5.3E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 SMART SM00825 Beta-ketoacyl synthase 6 419 8.1E-125 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 250 369 4.6E-35 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.40.47.10 6 254 7.2E-67 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Gene3D G3DSA:3.40.47.10 255 419 4.0E-51 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4066 b7244823db2fe06726d6cc70039148e6 1798 Pfam PF13745 HxxPF-repeated domain 1132 1229 5.2E-19 T 19-04-2016 AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 SUPERFAMILY SSF46689 6 82 4.99E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 1.4E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 Gene3D G3DSA:1.10.357.10 13 199 1.3E-21 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5677 f508dec6d4f879024b0b43d78a1aaca2 240 PANTHER PTHR30328 11 106 7.2E-15 T 19-04-2016 AMED_8158 1542b57f2ec95157cbe24a57732f965b 314 SUPERFAMILY SSF52540 186 234 3.64E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8158 1542b57f2ec95157cbe24a57732f965b 314 SUPERFAMILY SSF52540 25 147 3.64E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8158 1542b57f2ec95157cbe24a57732f965b 314 Gene3D G3DSA:3.40.50.300 29 104 1.0E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8158 1542b57f2ec95157cbe24a57732f965b 314 SUPERFAMILY SSF52540 58 97 7.78E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4648 a07759b6337666fe972c65dae46f9d39 543 PANTHER PTHR33938:SF4 81 514 3.2E-83 T 19-04-2016 AMED_4648 a07759b6337666fe972c65dae46f9d39 543 Pfam PF07519 Tannase and feruloyl esterase 78 515 1.4E-106 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_4648 a07759b6337666fe972c65dae46f9d39 543 SUPERFAMILY SSF53474 99 231 7.89E-10 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4648 a07759b6337666fe972c65dae46f9d39 543 SUPERFAMILY SSF53474 396 453 7.89E-10 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4648 a07759b6337666fe972c65dae46f9d39 543 Gene3D G3DSA:3.40.50.1820 392 448 2.5E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4648 a07759b6337666fe972c65dae46f9d39 543 Gene3D G3DSA:3.40.50.1820 165 218 2.5E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4648 a07759b6337666fe972c65dae46f9d39 543 PANTHER PTHR33938 81 514 3.2E-83 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Pfam PF02156 Glycosyl hydrolase family 26 153 442 4.7E-61 T 19-04-2016 IPR022790 Glycosyl hydrolase family 26 domain GO:0004553 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 SUPERFAMILY SSF51445 151 420 9.13E-46 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Gene3D G3DSA:3.20.20.80 151 447 9.1E-72 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Pfam PF00652 Ricin-type beta-trefoil lectin domain 13 135 2.8E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 288 305 1.3E-17 T 19-04-2016 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 349 361 1.3E-17 T 19-04-2016 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 222 236 1.3E-17 T 19-04-2016 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PRINTS PR00739 Glycosyl hydrolase family 26 signature 315 338 1.3E-17 T 19-04-2016 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 Gene3D G3DSA:2.80.10.50 11 137 6.7E-38 T 19-04-2016 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 SMART SM00458 11 138 6.4E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PANTHER PTHR40079 153 447 5.3E-61 T 19-04-2016 IPR000805 Glycoside hydrolase family 26 GO:0006080|GO:0016985 KEGG: 00051+3.2.1.78|MetaCyc: PWY-7456 AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 SUPERFAMILY SSF50370 11 137 1.03E-35 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3747 9a24e5b6ed7c32df3cab1a0fdb91b292 447 PANTHER PTHR40079:SF1 153 447 5.3E-61 T 19-04-2016 AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 SMART SM00327 195 361 0.0079 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 SUPERFAMILY SSF53300 195 327 4.96E-14 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 PANTHER PTHR39338:SF1 122 368 1.2E-67 T 19-04-2016 AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 Gene3D G3DSA:3.40.50.410 195 316 2.2E-5 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 PANTHER PTHR39338 122 368 1.2E-67 T 19-04-2016 AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 Pfam PF05762 VWA domain containing CoxE-like protein 143 360 7.5E-59 T 19-04-2016 IPR008912 Uncharacterised protein family CoxE-like AMED_1868 26d5feec4fdfbd49707abd35e447ab3a 370 PIRSF PIRSF010256 4 370 4.6E-94 T 19-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 Pfam PF00072 Response regulator receiver domain 4 117 3.5E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 PANTHER PTHR26402:SF578 1 228 4.0E-85 T 19-04-2016 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 SUPERFAMILY SSF52172 1 180 7.97E-43 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 Gene3D G3DSA:3.40.50.2300 1 124 4.1E-42 T 19-04-2016 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 SMART SM00862 154 227 1.7E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 PANTHER PTHR26402 1 228 4.0E-85 T 19-04-2016 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 1.9E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 SMART SM00448 1 116 4.0E-46 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5667 04a5195b913eadb8b9cf1236d55991a3 231 Gene3D G3DSA:1.10.10.10 137 229 4.7E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 1 67 1.08E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 81 140 7.0E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 1 67 2.8E-23 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 159 222 1.03E-17 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 159 223 7.6E-24 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Gene3D G3DSA:2.40.50.140 253 314 1.6E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 254 313 2.57E-14 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PRINTS PR00050 Cold shock protein signature 25 34 1.1E-11 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PRINTS PR00050 Cold shock protein signature 4 19 1.1E-11 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PRINTS PR00050 Cold shock protein signature 41 59 1.1E-11 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 PANTHER PTHR11544 1 67 4.7E-23 T 19-04-2016 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 253 313 6.2E-15 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 159 220 2.2E-19 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 6.2E-21 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 Pfam PF00313 'Cold-shock' DNA-binding domain 81 140 1.3E-16 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SUPERFAMILY SSF50249 79 142 1.57E-16 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 3 68 1.6E-23 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 80 142 1.6E-14 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 159 222 9.7E-19 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 SMART SM00357 253 315 6.8E-15 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 ProSitePatterns PS00352 'Cold-shock' domain signature. 171 190 - T 19-04-2016 IPR019844 Cold-shock conserved site AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 19-04-2016 IPR019844 Cold-shock conserved site AMED_5707 50cb70d08762c2b40a4eeb2e4f6bbc40 315 ProSitePatterns PS00352 'Cold-shock' domain signature. 265 284 - T 19-04-2016 IPR019844 Cold-shock conserved site AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 Gene3D G3DSA:2.30.38.10 305 364 2.1E-15 T 19-04-2016 AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 Gene3D G3DSA:3.40.50.980 149 304 1.0E-21 T 19-04-2016 AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 PANTHER PTHR24096 4 465 1.1E-74 T 19-04-2016 AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 Pfam PF13193 AMP-binding enzyme C-terminal domain 384 458 2.0E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 Gene3D G3DSA:3.30.300.30 370 467 1.5E-21 T 19-04-2016 AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 SUPERFAMILY SSF56801 4 467 7.98E-98 T 19-04-2016 AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 ProSitePatterns PS00455 Putative AMP-binding domain signature. 140 151 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 Gene3D G3DSA:3.40.50.980 5 148 3.9E-22 T 19-04-2016 AMED_2234 c804473e590ebe2c54c91b06148a92fa 470 Pfam PF00501 AMP-binding enzyme 11 374 1.5E-56 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 SUPERFAMILY SSF52402 4 178 1.88E-41 T 19-04-2016 AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 258 284 - T 19-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 Pfam PF01012 Electron transfer flavoprotein domain 4 175 4.4E-33 T 19-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 SUPERFAMILY SSF52467 192 313 4.78E-47 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 PIRSF PIRSF000089 1 319 3.1E-102 T 19-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 SMART SM00893 4 186 1.6E-31 T 19-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 195 277 4.4E-36 T 19-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 Gene3D G3DSA:3.40.50.620 1 184 5.1E-41 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 Gene3D G3DSA:3.40.50.1220 192 315 2.1E-58 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 PANTHER PTHR10909:SF294 107 312 5.0E-57 T 19-04-2016 AMED_1654 414b8a1b53989261aaddd1c4744328ff 319 PANTHER PTHR10909 107 312 5.0E-57 T 19-04-2016 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 SMART SM00422 3 72 1.1E-24 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 SUPERFAMILY SSF46955 3 103 2.56E-22 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 1.2E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 1.2E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 1.2E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 PANTHER PTHR30204 1 136 2.7E-18 T 19-04-2016 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 Pfam PF13411 MerR HTH family regulatory protein 3 70 4.2E-17 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8969 ef64752e70fe6b5a000c98a641e9f064 277 Gene3D G3DSA:1.10.1660.10 3 119 1.6E-26 T 19-04-2016 AMED_5020 50100919469af59afb9a746c085fbbef 202 SUPERFAMILY SSF63817 57 195 3.02E-13 T 19-04-2016 IPR023365 Sortase domain AMED_5020 50100919469af59afb9a746c085fbbef 202 Pfam PF04203 Sortase family 60 198 2.7E-16 T 19-04-2016 IPR005754 Sortase family AMED_5020 50100919469af59afb9a746c085fbbef 202 Gene3D G3DSA:2.40.260.10 60 187 5.5E-5 T 19-04-2016 IPR023365 Sortase domain AMED_5020 50100919469af59afb9a746c085fbbef 202 PANTHER PTHR33393 39 197 3.9E-26 T 19-04-2016 AMED_5020 50100919469af59afb9a746c085fbbef 202 PANTHER PTHR33393:SF4 39 197 3.9E-26 T 19-04-2016 AMED_1735 c4c8ae83d433d130311b8250e039b2d5 246 Pfam PF02424 ApbE family 92 226 6.1E-37 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_1735 c4c8ae83d433d130311b8250e039b2d5 246 Pfam PF02424 ApbE family 9 86 4.8E-9 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_1735 c4c8ae83d433d130311b8250e039b2d5 246 PANTHER PTHR30040 1 242 7.0E-45 T 19-04-2016 AMED_1735 c4c8ae83d433d130311b8250e039b2d5 246 SUPERFAMILY SSF143631 5 242 3.53E-59 T 19-04-2016 IPR003374 ApbE-like domain AMED_1735 c4c8ae83d433d130311b8250e039b2d5 246 PANTHER PTHR30040:SF2 1 242 7.0E-45 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_2104 bedef2904764df5fad9132c7888398a6 404 PANTHER PTHR33744:SF2 81 404 2.2E-118 T 19-04-2016 AMED_2104 bedef2904764df5fad9132c7888398a6 404 PANTHER PTHR33744 81 404 2.2E-118 T 19-04-2016 AMED_2104 bedef2904764df5fad9132c7888398a6 404 Pfam PF13556 PucR C-terminal helix-turn-helix domain 336 393 3.1E-19 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 PANTHER PTHR30173:SF25 1 281 3.9E-129 T 19-04-2016 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 Gene3D G3DSA:3.10.450.50 164 280 3.3E-17 T 19-04-2016 IPR032710 NTF2-like domain AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 SUPERFAMILY SSF88659 72 157 1.5E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 Gene3D G3DSA:1.10.10.10 100 154 1.2E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 SUPERFAMILY SSF54427 166 281 9.46E-18 T 19-04-2016 IPR032710 NTF2-like domain AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 152 2.9E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 Pfam PF04542 Sigma-70 region 2 6 69 4.2E-14 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 Pfam PF08281 Sigma-70, region 4 101 152 8.7E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 PANTHER PTHR30173 1 281 3.9E-129 T 19-04-2016 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 SUPERFAMILY SSF88946 3 83 3.49E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 Gene3D G3DSA:1.10.1740.10 3 70 1.8E-13 T 19-04-2016 AMED_6408 35df25387546a3f9ea59a53260d7b0c1 290 TIGRFAM TIGR02957 SigX4: RNA polymerase sigma-70 factor, TIGR02957 family 3 281 3.7E-111 T 19-04-2016 IPR014303 RNA polymerase sigma-70, ECF type AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 3.2E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.5E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.5E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 SUPERFAMILY SSF46689 8 86 9.23E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 SUPERFAMILY SSF48498 85 197 3.51E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 Gene3D G3DSA:1.10.357.10 64 199 6.9E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 Gene3D G3DSA:1.10.10.60 46 63 2.0E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 PANTHER PTHR30055 1 197 4.5E-23 T 19-04-2016 AMED_7147 ffd9ea1e959afcc8cf2817f3336deb48 231 Gene3D G3DSA:1.10.10.60 6 45 3.2E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8474 e4984dfc6acab8d152bcc8abb62f9008 501 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 197 253 5.5E-5 T 19-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_8474 e4984dfc6acab8d152bcc8abb62f9008 501 SUPERFAMILY SSF55931 186 466 2.26E-52 T 19-04-2016 AMED_8474 e4984dfc6acab8d152bcc8abb62f9008 501 SUPERFAMILY SSF55931 41 156 2.26E-52 T 19-04-2016 AMED_8474 e4984dfc6acab8d152bcc8abb62f9008 501 PIRSF PIRSF012666 1 500 4.6E-206 T 19-04-2016 IPR016602 Uncharacterised conserved protein UCP012666 AMED_4133 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF55785 290 410 1.4E-10 T 19-04-2016 IPR000014 PAS domain AMED_4133 291fced426042c86ecfd16fb9439b689 619 SMART SM00091 501 567 1.1E-5 T 19-04-2016 IPR000014 PAS domain AMED_4133 291fced426042c86ecfd16fb9439b689 619 SMART SM00091 299 364 42.0 T 19-04-2016 IPR000014 PAS domain AMED_4133 291fced426042c86ecfd16fb9439b689 619 SMART SM00138 8 269 5.0E-81 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF53335 74 268 1.84E-48 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4133 291fced426042c86ecfd16fb9439b689 619 Pfam PF01739 CheR methyltransferase, SAM binding domain 74 264 6.2E-54 T 19-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMED_4133 291fced426042c86ecfd16fb9439b689 619 PANTHER PTHR24422 10 559 3.8E-107 T 19-04-2016 AMED_4133 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:3.30.450.20 299 410 1.1E-11 T 19-04-2016 AMED_4133 291fced426042c86ecfd16fb9439b689 619 Pfam PF00989 PAS fold 301 409 1.1E-8 T 19-04-2016 IPR013767 PAS fold GO:0006355 AMED_4133 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF55785 500 607 2.97E-14 T 19-04-2016 IPR000014 PAS domain AMED_4133 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:1.10.287.950 427 489 1.6E-4 T 19-04-2016 AMED_4133 291fced426042c86ecfd16fb9439b689 619 Pfam PF08448 PAS fold 507 613 1.9E-6 T 19-04-2016 IPR013656 PAS fold-4 AMED_4133 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:3.40.50.150 73 268 3.1E-61 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4133 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:1.10.155.10 8 71 7.3E-16 T 19-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMED_4133 291fced426042c86ecfd16fb9439b689 619 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 298 414 1.5E-9 T 19-04-2016 IPR000014 PAS domain AMED_4133 291fced426042c86ecfd16fb9439b689 619 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 499 611 5.0E-10 T 19-04-2016 IPR000014 PAS domain AMED_4133 291fced426042c86ecfd16fb9439b689 619 SUPERFAMILY SSF47757 8 76 9.68E-13 T 19-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMED_4133 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 143 159 7.2E-31 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 209 223 7.2E-31 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 67 79 7.2E-31 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 228 251 7.2E-31 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 107 127 7.2E-31 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 7.2E-31 T 19-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMED_4133 291fced426042c86ecfd16fb9439b689 619 PANTHER PTHR24422:SF6 10 559 3.8E-107 T 19-04-2016 AMED_4133 291fced426042c86ecfd16fb9439b689 619 Gene3D G3DSA:3.30.450.20 490 607 1.5E-14 T 19-04-2016 AMED_4133 291fced426042c86ecfd16fb9439b689 619 Pfam PF03705 CheR methyltransferase, all-alpha domain 10 60 3.7E-16 T 19-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMED_0213 8390ccb04105cc2d045d706fa9804935 350 Pfam PF04443 Acyl-protein synthetase, LuxE 7 346 1.2E-46 T 19-04-2016 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723|UniPathway: UPA00569 AMED_0213 8390ccb04105cc2d045d706fa9804935 350 SUPERFAMILY SSF56801 154 314 1.25E-5 T 19-04-2016 AMED_0838 af2ff54ddf8618874c1b317d8c07c3d1 278 PANTHER PTHR22748 3 278 4.7E-79 T 19-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMED_0838 af2ff54ddf8618874c1b317d8c07c3d1 278 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 9 259 7.2E-23 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_0838 af2ff54ddf8618874c1b317d8c07c3d1 278 Gene3D G3DSA:3.60.10.10 5 267 3.1E-84 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_0838 af2ff54ddf8618874c1b317d8c07c3d1 278 SUPERFAMILY SSF56219 5 267 1.57E-68 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_0838 af2ff54ddf8618874c1b317d8c07c3d1 278 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 7 266 1.2E-66 T 19-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMED_0838 af2ff54ddf8618874c1b317d8c07c3d1 278 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 8 265 9.4E-65 T 19-04-2016 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 Gene3D G3DSA:3.40.50.2000 212 362 4.0E-30 T 19-04-2016 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 220 358 1.3E-14 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 SUPERFAMILY SSF53756 3 380 8.64E-70 T 19-04-2016 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 PANTHER PTHR11926:SF16 1 362 6.6E-35 T 19-04-2016 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 Gene3D G3DSA:3.40.50.2000 3 127 9.6E-19 T 19-04-2016 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 194 379 1.4E-34 T 19-04-2016 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 AMED_4608 5df60251eecf81ba93385a0df4847c21 389 PANTHER PTHR11926 1 362 6.6E-35 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_4842 2c6b46b26f79620cf30ec309c1a934b0 517 PANTHER PTHR35861 2 516 1.7E-183 T 19-04-2016 AMED_4842 2c6b46b26f79620cf30ec309c1a934b0 517 Pfam PF04984 Phage tail sheath protein 1 505 5.8E-87 T 19-04-2016 IPR007067 Tail sheath protein AMED_4842 2c6b46b26f79620cf30ec309c1a934b0 517 PANTHER PTHR35861:SF1 2 516 1.7E-183 T 19-04-2016 AMED_3875 4109d2984a3909b9747e054ee145e143 431 PANTHER PTHR10909 4 31 5.1E-102 T 19-04-2016 AMED_3875 4109d2984a3909b9747e054ee145e143 431 PANTHER PTHR10909 54 422 5.1E-102 T 19-04-2016 AMED_3875 4109d2984a3909b9747e054ee145e143 431 Gene3D G3DSA:1.20.140.10 242 409 3.7E-27 T 19-04-2016 AMED_3875 4109d2984a3909b9747e054ee145e143 431 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 146 240 4.1E-21 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3875 4109d2984a3909b9747e054ee145e143 431 SUPERFAMILY SSF47203 253 407 2.09E-16 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3875 4109d2984a3909b9747e054ee145e143 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 142 3.6E-12 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3875 4109d2984a3909b9747e054ee145e143 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 253 403 8.7E-20 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3875 4109d2984a3909b9747e054ee145e143 431 Gene3D G3DSA:1.10.540.10 10 143 1.6E-14 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3875 4109d2984a3909b9747e054ee145e143 431 PANTHER PTHR10909:SF242 4 31 5.1E-102 T 19-04-2016 AMED_3875 4109d2984a3909b9747e054ee145e143 431 PANTHER PTHR10909:SF242 54 422 5.1E-102 T 19-04-2016 AMED_3875 4109d2984a3909b9747e054ee145e143 431 SUPERFAMILY SSF56645 60 265 4.32E-66 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3875 4109d2984a3909b9747e054ee145e143 431 Gene3D G3DSA:2.40.110.10 145 241 8.3E-36 T 19-04-2016 AMED_4435 60bed975bd849e03031682ab05137882 313 Pfam PF14100 Methane oxygenase PmoA 21 303 9.4E-78 T 19-04-2016 IPR029475 Methane oxygenase PmoA AMED_3776 0ea47dc94040840ef958a73d73a09ed0 124 Gene3D G3DSA:3.30.70.900 21 113 5.3E-23 T 19-04-2016 AMED_3776 0ea47dc94040840ef958a73d73a09ed0 124 SUPERFAMILY SSF54909 23 114 7.15E-14 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF48452 894 974 9.49E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:3.40.50.300 281 321 1.2E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF52540 277 542 1.7E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF46894 10 96 1.36E-7 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Pfam PF03704 Bacterial transcriptional activator domain 103 248 1.4E-9 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM01043 103 248 1.4E-4 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Pfam PF13424 Tetratricopeptide repeat 769 834 1.4E-8 T 19-04-2016 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF48452 721 892 1.71E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.25.40.10 114 143 6.2E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.25.40.10 724 805 6.2E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.25.40.10 806 960 2.2E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 PRINTS PR00364 Disease resistance protein signature 473 487 1.4E-7 T 19-04-2016 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 PRINTS PR00364 Disease resistance protein signature 386 400 1.4E-7 T 19-04-2016 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 PRINTS PR00364 Disease resistance protein signature 309 324 1.4E-7 T 19-04-2016 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:1.10.10.10 26 99 1.9E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Pfam PF00931 NB-ARC domain 308 502 3.8E-9 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 PANTHER PTHR22845 167 625 2.2E-34 T 19-04-2016 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SUPERFAMILY SSF48452 98 253 1.1E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 PANTHER PTHR22845:SF4 167 625 2.2E-34 T 19-04-2016 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 727 760 77.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 108 141 460.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 807 840 150.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 927 960 1.1 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 887 920 190.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00028 767 800 440.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 SMART SM00862 18 96 0.0077 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6363 44617ee4ce4cd30d1f8dafc618fefd52 1008 Gene3D G3DSA:3.40.50.300 322 442 1.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8576 b411412851bccd7fde53b725f2539a86 252 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 250 8.5E-103 T 19-04-2016 AMED_8576 b411412851bccd7fde53b725f2539a86 252 SUPERFAMILY SSF110399 5 242 3.27E-80 T 19-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 AMED_8576 b411412851bccd7fde53b725f2539a86 252 Gene3D G3DSA:3.20.20.70 6 249 4.2E-53 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8576 b411412851bccd7fde53b725f2539a86 252 PANTHER PTHR34266 1 250 1.2E-139 T 19-04-2016 AMED_8576 b411412851bccd7fde53b725f2539a86 252 Hamap MF_00443 Thiazole synthase [thiG]. 5 252 40.145 T 19-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 AMED_7138 e6e94f4a11009e1759188444f90df040 308 SUPERFAMILY SSF51735 4 258 1.18E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 2.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 2.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 2.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 2.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 2.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 2.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 2.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PANTHER PTHR24322:SF428 13 32 6.6E-34 T 19-04-2016 AMED_7138 e6e94f4a11009e1759188444f90df040 308 PANTHER PTHR24322:SF428 56 196 6.6E-34 T 19-04-2016 AMED_7138 e6e94f4a11009e1759188444f90df040 308 Pfam PF00106 short chain dehydrogenase 10 198 2.8E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 Gene3D G3DSA:3.40.50.720 3 257 1.4E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7138 e6e94f4a11009e1759188444f90df040 308 PANTHER PTHR24322 13 32 6.6E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7138 e6e94f4a11009e1759188444f90df040 308 PANTHER PTHR24322 56 196 6.6E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4367 5de5991052d0f7afe3efed7da2f9a526 252 Gene3D G3DSA:3.90.1720.10 191 242 2.7E-4 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_4367 5de5991052d0f7afe3efed7da2f9a526 252 Gene3D G3DSA:3.90.1720.10 92 146 2.7E-4 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_0607 912ecd8f285c96642d215e652d18aaaf 394 PANTHER PTHR33371 1 325 2.1E-93 T 19-04-2016 AMED_0607 912ecd8f285c96642d215e652d18aaaf 394 PANTHER PTHR33371:SF5 1 325 2.1E-93 T 19-04-2016 AMED_0607 912ecd8f285c96642d215e652d18aaaf 394 Pfam PF02470 MlaD protein 38 111 3.1E-13 T 19-04-2016 IPR003399 Mce/MlaD AMED_0607 912ecd8f285c96642d215e652d18aaaf 394 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 15 299 2.7E-65 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 SUPERFAMILY SSF51679 2 330 1.26E-75 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 Gene3D G3DSA:3.20.20.30 3 331 3.2E-88 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 Hamap MF_02123 F420-dependent glucose-6-phosphate dehydrogenase [fgd]. 1 332 70.032 T 19-04-2016 IPR019944 F420-dependent glucose-6-phosphate dehydrogenase AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 TIGRFAM TIGR03554 F420_G6P_DH: glucose-6-phosphate dehydrogenase (coenzyme-F420) 2 330 9.1E-176 T 19-04-2016 IPR019944 F420-dependent glucose-6-phosphate dehydrogenase AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 PANTHER PTHR30011 4 333 2.0E-115 T 19-04-2016 AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 PANTHER PTHR30011:SF27 4 333 2.0E-115 T 19-04-2016 AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 Pfam PF00296 Luciferase-like monooxygenase 10 304 2.7E-66 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3381 254bc22b8ed6079fe4582a66baa597a3 333 TIGRFAM TIGR03557 F420_G6P_family: F420-dependent oxidoreductase, G6PDH family 4 330 3.8E-85 T 19-04-2016 IPR019945 F420-dependent glucose-6-phosphate dehydrogenase-related AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 214 247 2.7E-7 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 Pfam PF01345 Domain of unknown function DUF11 197 251 1.4E-8 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 Pfam PF13620 Carboxypeptidase regulatory-like domain 443 503 2.9E-9 T 19-04-2016 AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 SUPERFAMILY SSF117074 309 387 1.22E-20 T 19-04-2016 AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 Gene3D G3DSA:2.60.40.10 317 381 4.8E-21 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 Gene3D G3DSA:2.60.40.10 433 500 2.8E-20 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 PANTHER PTHR23303:SF17 313 492 2.2E-29 T 19-04-2016 AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 Pfam PF05738 Cna protein B-type domain 336 385 4.5E-11 T 19-04-2016 IPR008454 Collagen-binding surface protein Cna-like, B-type domain AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 SUPERFAMILY SSF117074 413 494 1.96E-21 T 19-04-2016 AMED_9277 9f0fb44310e48798b431e6296a3de4d7 539 PANTHER PTHR23303 313 492 2.2E-29 T 19-04-2016 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 270 279 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 18 29 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 64 80 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 119 141 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 245 260 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 199 210 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 81 96 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 217 244 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 277 288 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00359 B-class P450 signature 268 277 9.2E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 SUPERFAMILY SSF48264 7 327 3.67E-83 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 Pfam PF00067 Cytochrome P450 12 298 3.2E-27 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 199 210 2.0E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 164 181 2.0E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 268 277 2.0E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PRINTS PR00385 P450 superfamily signature 277 288 2.0E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 Gene3D G3DSA:1.10.630.10 6 328 2.7E-101 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9185 3fc43f80e36df85d5f38318617145cce 328 PANTHER PTHR11712 1 326 5.6E-84 T 19-04-2016 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 140 155 9.1E-21 T 19-04-2016 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 303 9.1E-21 T 19-04-2016 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 9.1E-21 T 19-04-2016 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 272 287 9.1E-21 T 19-04-2016 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 SUPERFAMILY SSF51905 259 345 1.77E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 SUPERFAMILY SSF51905 1 161 1.77E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 PANTHER PTHR13789 1 338 1.2E-70 T 19-04-2016 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 Pfam PF01494 FAD binding domain 3 333 1.9E-25 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 Gene3D G3DSA:3.50.50.60 260 339 2.3E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4778 9e20ff66d655783f0a68b8ef8cae5459 368 Gene3D G3DSA:3.50.50.60 1 166 2.3E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0137 fac860fa918ebaf2c11bfc649dc64b42 119 PANTHER PTHR12231 22 108 2.5E-16 T 19-04-2016 AMED_0137 fac860fa918ebaf2c11bfc649dc64b42 119 SUPERFAMILY SSF52821 8 109 1.27E-33 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_0137 fac860fa918ebaf2c11bfc649dc64b42 119 Pfam PF00581 Rhodanese-like domain 14 102 6.1E-16 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_0137 fac860fa918ebaf2c11bfc649dc64b42 119 SMART SM00450 10 106 1.3E-22 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_0137 fac860fa918ebaf2c11bfc649dc64b42 119 Gene3D G3DSA:3.40.250.10 9 108 6.3E-31 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_8601 3a8d4e4e3e1a5932dd8ffe6e0b23f41c 411 PANTHER PTHR35791 8 411 5.1E-58 T 19-04-2016 AMED_8601 3a8d4e4e3e1a5932dd8ffe6e0b23f41c 411 PANTHER PTHR35791:SF1 8 411 5.1E-58 T 19-04-2016 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 SUPERFAMILY SSF55816 363 562 3.53E-50 T 19-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PANTHER PTHR11575:SF7 1 559 1.5E-128 T 19-04-2016 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 SUPERFAMILY SSF56300 31 363 1.09E-66 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 429 452 6.3E-21 T 19-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 299 319 6.3E-21 T 19-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 35 53 6.3E-21 T 19-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 500 519 6.3E-21 T 19-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PRINTS PR01607 Apyrase family signature 268 291 6.3E-21 T 19-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 PANTHER PTHR11575 1 559 1.5E-128 T 19-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 Pfam PF00149 Calcineurin-like phosphoesterase 38 285 6.8E-10 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 Gene3D G3DSA:3.90.780.10 366 561 1.4E-50 T 19-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 Gene3D G3DSA:3.60.21.10 30 363 5.6E-76 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_9190 9f9dc348cff46333e982f2e0b3f31b82 563 Pfam PF02872 5'-nucleotidase, C-terminal domain 366 525 2.6E-38 T 19-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 Gene3D G3DSA:3.40.50.1820 120 164 1.9E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 Gene3D G3DSA:3.40.50.1820 29 76 1.9E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 Gene3D G3DSA:3.40.50.1820 201 375 1.9E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 SUPERFAMILY SSF53474 334 351 2.32E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 SUPERFAMILY SSF53474 196 263 2.32E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 SUPERFAMILY SSF53474 102 156 2.32E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5561 7fbbf59e7ab4591b0a1e945b532a4013 385 PANTHER PTHR10272 30 364 6.3E-27 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_0078 4c4c3c8744e0910e483f6c4a977a6dae 287 PANTHER PTHR32308 5 284 1.7E-95 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_0078 4c4c3c8744e0910e483f6c4a977a6dae 287 SUPERFAMILY SSF51621 5 232 2.86E-69 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_0078 4c4c3c8744e0910e483f6c4a977a6dae 287 Gene3D G3DSA:3.20.20.60 3 233 2.1E-77 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_0078 4c4c3c8744e0910e483f6c4a977a6dae 287 PANTHER PTHR32308:SF0 5 284 1.7E-95 T 19-04-2016 AMED_0078 4c4c3c8744e0910e483f6c4a977a6dae 287 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 8 222 5.8E-49 T 19-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMED_0078 4c4c3c8744e0910e483f6c4a977a6dae 287 PIRSF PIRSF015582 1 287 1.5E-85 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 Gene3D G3DSA:3.30.360.10 146 316 2.5E-24 T 19-04-2016 AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 122 7.5E-19 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 PANTHER PTHR22604 6 271 1.7E-54 T 19-04-2016 AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 SUPERFAMILY SSF55347 128 289 4.25E-27 T 19-04-2016 AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 Gene3D G3DSA:3.40.50.720 5 145 1.0E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 SUPERFAMILY SSF51735 5 154 7.49E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5447 7eeca0599ce95d6471d169de3af0894b 317 PANTHER PTHR22604:SF105 6 271 1.7E-54 T 19-04-2016 AMED_3213 7000181145cd31d842224869b3e0e971 364 Gene3D G3DSA:3.30.420.10 211 336 5.4E-7 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_3213 7000181145cd31d842224869b3e0e971 364 Gene3D G3DSA:1.10.10.10 27 72 4.2E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3213 7000181145cd31d842224869b3e0e971 364 Pfam PF13565 Homeodomain-like domain 64 135 1.1E-12 T 19-04-2016 AMED_3213 7000181145cd31d842224869b3e0e971 364 PANTHER PTHR30347:SF1 5 359 3.8E-123 T 19-04-2016 AMED_3213 7000181145cd31d842224869b3e0e971 364 PANTHER PTHR30347 5 359 3.8E-123 T 19-04-2016 AMED_3213 7000181145cd31d842224869b3e0e971 364 SUPERFAMILY SSF46689 30 139 4.3E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3213 7000181145cd31d842224869b3e0e971 364 Pfam PF13358 DDE superfamily endonuclease 176 321 2.2E-20 T 19-04-2016 AMED_3213 7000181145cd31d842224869b3e0e971 364 SUPERFAMILY SSF53098 206 345 3.79E-6 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_4744 7000181145cd31d842224869b3e0e971 364 Gene3D G3DSA:3.30.420.10 211 336 5.4E-7 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_4744 7000181145cd31d842224869b3e0e971 364 Gene3D G3DSA:1.10.10.10 27 72 4.2E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4744 7000181145cd31d842224869b3e0e971 364 Pfam PF13565 Homeodomain-like domain 64 135 1.1E-12 T 19-04-2016 AMED_4744 7000181145cd31d842224869b3e0e971 364 PANTHER PTHR30347:SF1 5 359 3.8E-123 T 19-04-2016 AMED_4744 7000181145cd31d842224869b3e0e971 364 PANTHER PTHR30347 5 359 3.8E-123 T 19-04-2016 AMED_4744 7000181145cd31d842224869b3e0e971 364 SUPERFAMILY SSF46689 30 139 4.3E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4744 7000181145cd31d842224869b3e0e971 364 Pfam PF13358 DDE superfamily endonuclease 176 321 2.2E-20 T 19-04-2016 AMED_4744 7000181145cd31d842224869b3e0e971 364 SUPERFAMILY SSF53098 206 345 3.79E-6 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_6713 89d5060a4f3294146fd9a2e432e2cfad 237 SUPERFAMILY SSF109854 2 134 1.5E-11 T 19-04-2016 AMED_6713 89d5060a4f3294146fd9a2e432e2cfad 237 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 16 215 1.9E-25 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_6713 89d5060a4f3294146fd9a2e432e2cfad 237 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 21 132 1.9E-18 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_6713 89d5060a4f3294146fd9a2e432e2cfad 237 PANTHER PTHR40758 3 221 1.1E-35 T 19-04-2016 AMED_6713 89d5060a4f3294146fd9a2e432e2cfad 237 Pfam PF07398 MDMPI C-terminal domain 141 228 1.4E-9 T 19-04-2016 IPR010872 MDMPI C-terminal AMED_3325 dde761ad3bca85701be0d5f07b1358db 404 SUPERFAMILY SSF103473 6 392 1.7E-27 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3325 dde761ad3bca85701be0d5f07b1358db 404 PANTHER PTHR23513 11 392 6.1E-38 T 19-04-2016 AMED_3325 dde761ad3bca85701be0d5f07b1358db 404 Gene3D G3DSA:1.20.1250.20 220 388 9.9E-10 T 19-04-2016 AMED_3325 dde761ad3bca85701be0d5f07b1358db 404 Gene3D G3DSA:1.20.1250.20 13 185 2.8E-10 T 19-04-2016 AMED_3325 dde761ad3bca85701be0d5f07b1358db 404 Pfam PF07690 Major Facilitator Superfamily 16 269 6.6E-11 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8035 6cb81b218404cd82e4894c353e450229 439 Pfam PF00672 HAMP domain 148 212 2.5E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8035 6cb81b218404cd82e4894c353e450229 439 SMART SM00387 325 435 2.1E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8035 6cb81b218404cd82e4894c353e450229 439 PANTHER PTHR24423 164 429 7.0E-61 T 19-04-2016 AMED_8035 6cb81b218404cd82e4894c353e450229 439 SMART SM00388 219 284 1.0E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8035 6cb81b218404cd82e4894c353e450229 439 Gene3D G3DSA:1.10.287.130 210 280 2.3E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8035 6cb81b218404cd82e4894c353e450229 439 SUPERFAMILY SSF47384 202 285 1.31E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8035 6cb81b218404cd82e4894c353e450229 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 284 9.0E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8035 6cb81b218404cd82e4894c353e450229 439 Gene3D G3DSA:3.30.565.10 290 431 5.5E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8035 6cb81b218404cd82e4894c353e450229 439 SUPERFAMILY SSF55874 291 434 1.02E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8035 6cb81b218404cd82e4894c353e450229 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 429 1.0E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8035 6cb81b218404cd82e4894c353e450229 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 6.1E-11 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8035 6cb81b218404cd82e4894c353e450229 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 413 6.1E-11 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8035 6cb81b218404cd82e4894c353e450229 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 6.1E-11 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1616 71e2ed058b908ac1ae454f3d7663049c 386 Gene3D G3DSA:3.40.50.150 94 167 9.9E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1616 71e2ed058b908ac1ae454f3d7663049c 386 SUPERFAMILY SSF53335 90 205 1.81E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2298 f138d5c9f4655b58209ded7387787f89 218 PANTHER PTHR11022 34 207 2.9E-25 T 19-04-2016 IPR015510 Peptidoglycan recognition protein GO:0008745|GO:0009253 AMED_2298 f138d5c9f4655b58209ded7387787f89 218 SUPERFAMILY SSF55846 38 212 1.57E-44 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_2298 f138d5c9f4655b58209ded7387787f89 218 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 61 198 3.0E-14 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_2298 f138d5c9f4655b58209ded7387787f89 218 SMART SM00644 50 198 8.3E-5 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_2298 f138d5c9f4655b58209ded7387787f89 218 PANTHER PTHR11022:SF41 34 207 2.9E-25 T 19-04-2016 AMED_2298 f138d5c9f4655b58209ded7387787f89 218 Gene3D G3DSA:3.40.80.10 32 214 9.5E-47 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_2298 f138d5c9f4655b58209ded7387787f89 218 SMART SM00701 38 192 1.4E-6 T 19-04-2016 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 AMED_2677 11bf75c7dc7d3fa53ebbd2c766588822 246 SUPERFAMILY SSF53597 28 243 1.96E-39 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_2677 11bf75c7dc7d3fa53ebbd2c766588822 246 Gene3D G3DSA:3.40.430.10 15 243 1.7E-61 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_2677 11bf75c7dc7d3fa53ebbd2c766588822 246 Pfam PF01872 RibD C-terminal domain 30 230 2.1E-32 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 SMART SM00382 27 210 9.2E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 Pfam PF08402 TOBE domain 267 331 4.9E-7 T 19-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 SUPERFAMILY SSF50331 238 332 9.18E-9 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 PANTHER PTHR24220:SF123 4 234 9.2E-101 T 19-04-2016 AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 Pfam PF00005 ABC transporter 20 160 1.3E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 PANTHER PTHR24220 4 234 9.2E-101 T 19-04-2016 AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 Gene3D G3DSA:3.40.50.300 2 233 1.1E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8040 ce75d041bafe408503cf54736ba03fc6 335 SUPERFAMILY SSF52540 3 238 6.14E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 SMART SM00387 504 617 1.8E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 PANTHER PTHR24423 17 34 4.4E-43 T 19-04-2016 AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 Pfam PF00672 HAMP domain 304 387 2.3E-8 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 PANTHER PTHR24423:SF523 17 34 4.4E-43 T 19-04-2016 AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 SUPERFAMILY SSF55874 497 615 6.02E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 Gene3D G3DSA:3.30.565.10 508 612 2.0E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 Pfam PF08376 Nitrate and nitrite sensing 49 270 8.6E-22 T 19-04-2016 IPR013587 Nitrate/nitrite sensing protein AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 PANTHER PTHR24423:SF523 372 673 4.4E-43 T 19-04-2016 AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 PANTHER PTHR24423 372 673 4.4E-43 T 19-04-2016 AMED_7680 61b914bd860393d8d77f051ca0cc2b20 864 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 508 612 9.8E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6181 80d113177a279f68d09508bc82aa0af1 326 PANTHER PTHR30173 18 322 6.3E-71 T 19-04-2016 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 Gene3D G3DSA:1.10.1740.10 3 96 6.6E-28 T 19-04-2016 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 Pfam PF04542 Sigma-70 region 2 18 82 3.4E-19 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 Pfam PF08281 Sigma-70, region 4 135 188 6.3E-13 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 SUPERFAMILY SSF54427 204 297 4.98E-10 T 19-04-2016 IPR032710 NTF2-like domain AMED_6181 80d113177a279f68d09508bc82aa0af1 326 SUPERFAMILY SSF88946 5 84 2.43E-23 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 Gene3D G3DSA:3.10.450.50 201 299 4.6E-12 T 19-04-2016 IPR032710 NTF2-like domain AMED_6181 80d113177a279f68d09508bc82aa0af1 326 Gene3D G3DSA:1.10.10.10 131 191 1.7E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6181 80d113177a279f68d09508bc82aa0af1 326 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 8 321 1.4E-96 T 19-04-2016 IPR014305 RNA polymerase sigma-G type, actinobacteria AMED_6181 80d113177a279f68d09508bc82aa0af1 326 SUPERFAMILY SSF88659 131 190 8.29E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 191 1.8E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6181 80d113177a279f68d09508bc82aa0af1 326 PANTHER PTHR30173:SF22 18 322 6.3E-71 T 19-04-2016 AMED_8079 e931d2d28adc042d13bae6b16b4ae638 253 SUPERFAMILY SSF50346 4 106 1.35E-21 T 19-04-2016 IPR011033 PRC-barrel-like AMED_8079 e931d2d28adc042d13bae6b16b4ae638 253 Gene3D G3DSA:3.90.50.10 13 101 8.3E-6 T 19-04-2016 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 AMED_8079 e931d2d28adc042d13bae6b16b4ae638 253 Pfam PF09557 Domain of unknown function (DUF2382) 136 243 1.2E-30 T 19-04-2016 IPR019060 Domain of unknown function DUF2382 AMED_8079 e931d2d28adc042d13bae6b16b4ae638 253 Pfam PF05239 PRC-barrel domain 6 75 2.6E-10 T 19-04-2016 IPR027275 PRC-barrel domain AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 SUPERFAMILY SSF53474 8 354 2.29E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 SMART SM00939 321 573 9.8E-80 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 PANTHER PTHR11731 224 339 1.4E-44 T 19-04-2016 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 PANTHER PTHR11731:SF151 224 339 1.4E-44 T 19-04-2016 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 PANTHER PTHR11731:SF151 5 170 1.4E-44 T 19-04-2016 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:3.40.50.1820 233 351 2.4E-84 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:3.40.50.1820 7 147 2.4E-84 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 SUPERFAMILY SSF49785 346 578 2.13E-63 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 334 573 5.7E-50 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 15 292 2.5E-62 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 PANTHER PTHR11731 5 170 1.4E-44 T 19-04-2016 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:2.60.120.260 352 583 2.5E-77 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 11 577 1.8E-151 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_4779 c2d7c993b2409d3ef746e38cba80ff23 587 Gene3D G3DSA:1.10.3020.10 148 232 1.6E-25 T 19-04-2016 AMED_2798 23524c357ed468481098aec5a39cb005 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 312 7.1E-67 T 19-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 152 2.3E-58 T 19-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 19-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 Gene3D G3DSA:3.40.50.720 2 160 1.8E-74 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2798 23524c357ed468481098aec5a39cb005 334 PANTHER PTHR10836:SF50 2 333 1.9E-210 T 19-04-2016 AMED_2798 23524c357ed468481098aec5a39cb005 334 SUPERFAMILY SSF55347 152 313 2.38E-70 T 19-04-2016 AMED_2798 23524c357ed468481098aec5a39cb005 334 SMART SM00846 3 152 3.0E-93 T 19-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 SUPERFAMILY SSF51735 2 179 1.21E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2798 23524c357ed468481098aec5a39cb005 334 PIRSF PIRSF000149 1 333 4.9E-131 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 PANTHER PTHR10836 2 333 1.9E-210 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 1.5E-38 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.5E-38 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.5E-38 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 1.5E-38 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 1.5E-38 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMED_2798 23524c357ed468481098aec5a39cb005 334 Gene3D G3DSA:3.30.360.10 161 314 5.4E-74 T 19-04-2016 AMED_2798 23524c357ed468481098aec5a39cb005 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.2E-132 T 19-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 AMED_2253 cb03110883068a797a900f54a3619372 199 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 62 75 - T 19-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 AMED_2253 cb03110883068a797a900f54a3619372 199 SUPERFAMILY SSF54211 88 184 2.91E-28 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_2253 cb03110883068a797a900f54a3619372 199 PANTHER PTHR23133:SF2 1 199 7.4E-91 T 19-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 AMED_2253 cb03110883068a797a900f54a3619372 199 Gene3D G3DSA:3.30.230.40 91 199 1.3E-30 T 19-04-2016 AMED_2253 cb03110883068a797a900f54a3619372 199 SUPERFAMILY SSF54211 3 86 3.67E-32 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_2253 cb03110883068a797a900f54a3619372 199 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 32 179 5.9E-59 T 19-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 AMED_2253 cb03110883068a797a900f54a3619372 199 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 161 173 - T 19-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 AMED_2253 cb03110883068a797a900f54a3619372 199 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 3 199 41.091 T 19-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 AMED_2253 cb03110883068a797a900f54a3619372 199 Gene3D G3DSA:3.30.230.40 3 90 1.7E-36 T 19-04-2016 AMED_2253 cb03110883068a797a900f54a3619372 199 PANTHER PTHR23133 1 199 7.4E-91 T 19-04-2016 AMED_9032 ceda5bbdc9adf5d97ce4d3f0d1e98d2f 250 Gene3D G3DSA:3.40.630.30 121 243 2.0E-11 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9032 ceda5bbdc9adf5d97ce4d3f0d1e98d2f 250 Pfam PF00583 Acetyltransferase (GNAT) family 169 222 1.3E-4 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_9032 ceda5bbdc9adf5d97ce4d3f0d1e98d2f 250 SUPERFAMILY SSF55729 69 244 3.66E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 Gene3D G3DSA:1.20.1250.20 18 211 7.5E-26 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 Pfam PF07690 Major Facilitator Superfamily 28 423 2.7E-38 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PANTHER PTHR23501 5 471 5.1E-101 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 148 172 1.6E-5 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 27 51 1.6E-5 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 414 433 1.6E-5 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 118 138 1.6E-5 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 Gene3D G3DSA:1.20.1250.20 286 464 1.3E-6 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 PANTHER PTHR23501:SF31 5 471 5.1E-101 T 19-04-2016 AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 SUPERFAMILY SSF103473 12 209 1.44E-52 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9198 1deb8f5e9ecf0e011e251dd9f3f8aead 471 SUPERFAMILY SSF103473 261 468 1.44E-52 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 SUPERFAMILY SSF52172 1 134 2.7E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 PANTHER PTHR26402 2 218 2.5E-74 T 19-04-2016 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 1.5E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 SMART SM00421 155 212 6.6E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 SUPERFAMILY SSF46894 149 217 1.02E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 Gene3D G3DSA:1.10.10.10 158 217 5.7E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 1.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 1.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 1.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 Gene3D G3DSA:3.40.50.2300 1 157 2.0E-38 T 19-04-2016 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 PANTHER PTHR26402:SF151 2 218 2.5E-74 T 19-04-2016 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 Pfam PF00072 Response regulator receiver domain 4 117 1.9E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7234 a0e78392ae156be66c354f5c8fcbf840 219 SMART SM00448 2 117 3.9E-34 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6134 fd949184fa77759b8a707079f3302488 247 PANTHER PTHR11019:SF53 11 247 4.7E-56 T 19-04-2016 AMED_6134 fd949184fa77759b8a707079f3302488 247 Gene3D G3DSA:1.10.10.60 136 196 3.2E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6134 fd949184fa77759b8a707079f3302488 247 Pfam PF12833 Helix-turn-helix domain 167 241 1.6E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6134 fd949184fa77759b8a707079f3302488 247 Gene3D G3DSA:2.60.120.10 12 75 7.3E-9 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_6134 fd949184fa77759b8a707079f3302488 247 PANTHER PTHR11019 11 247 4.7E-56 T 19-04-2016 AMED_6134 fd949184fa77759b8a707079f3302488 247 Gene3D G3DSA:1.10.10.60 197 242 6.6E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6134 fd949184fa77759b8a707079f3302488 247 Pfam PF02311 AraC-like ligand binding domain 13 84 1.3E-6 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_6134 fd949184fa77759b8a707079f3302488 247 SUPERFAMILY SSF46689 194 243 4.48E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6134 fd949184fa77759b8a707079f3302488 247 SMART SM00342 158 240 1.6E-20 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6134 fd949184fa77759b8a707079f3302488 247 SUPERFAMILY SSF51182 13 163 1.6E-12 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_8067 60e83910acbb065bd63d531e1889176c 207 SMART SM00849 24 188 1.2E-37 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8067 60e83910acbb065bd63d531e1889176c 207 Gene3D G3DSA:3.60.15.10 24 192 3.2E-47 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8067 60e83910acbb065bd63d531e1889176c 207 PANTHER PTHR11935:SF82 1 197 1.8E-91 T 19-04-2016 AMED_8067 60e83910acbb065bd63d531e1889176c 207 SUPERFAMILY SSF56281 9 199 2.17E-46 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8067 60e83910acbb065bd63d531e1889176c 207 Pfam PF00753 Metallo-beta-lactamase superfamily 25 188 3.3E-22 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8067 60e83910acbb065bd63d531e1889176c 207 PANTHER PTHR11935 1 197 1.8E-91 T 19-04-2016 AMED_3813 38ee62d86bb27d1930028f9f6cbac707 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 9.6E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3813 38ee62d86bb27d1930028f9f6cbac707 196 Gene3D G3DSA:1.10.357.10 8 191 1.2E-41 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3813 38ee62d86bb27d1930028f9f6cbac707 196 SUPERFAMILY SSF48498 86 189 1.36E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3813 38ee62d86bb27d1930028f9f6cbac707 196 SUPERFAMILY SSF46689 7 87 9.98E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3813 38ee62d86bb27d1930028f9f6cbac707 196 PANTHER PTHR30055 3 187 6.9E-46 T 19-04-2016 AMED_3813 38ee62d86bb27d1930028f9f6cbac707 196 PANTHER PTHR30055:SF19 3 187 6.9E-46 T 19-04-2016 AMED_0648 004bffb0707a9619122019738cf014ce 250 SMART SM00824 Thioesterase 15 237 0.0074 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_0648 004bffb0707a9619122019738cf014ce 250 PANTHER PTHR11487 1 247 1.6E-90 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_0648 004bffb0707a9619122019738cf014ce 250 Pfam PF00975 Thioesterase domain 13 231 7.5E-55 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_0648 004bffb0707a9619122019738cf014ce 250 SUPERFAMILY SSF53474 4 235 5.86E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0648 004bffb0707a9619122019738cf014ce 250 Gene3D G3DSA:3.40.50.1820 5 234 1.3E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 PANTHER PTHR11772:SF2 2 396 5.7E-138 T 19-04-2016 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 Gene3D G3DSA:3.60.20.10 2 231 6.2E-63 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 Pfam PF00733 Asparagine synthase 253 623 6.5E-96 T 19-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 PIRSF PIRSF001589 1 637 1.7E-165 T 19-04-2016 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 Pfam PF13537 Glutamine amidotransferase domain 50 172 4.9E-36 T 19-04-2016 IPR017932 Glutamine amidotransferase type 2 domain AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 561 3.2E-134 T 19-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 Gene3D G3DSA:3.40.50.620 476 623 4.8E-91 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 Gene3D G3DSA:3.40.50.620 232 390 4.8E-91 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 SUPERFAMILY SSF56235 2 231 1.89E-49 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 PANTHER PTHR11772:SF2 473 585 5.7E-138 T 19-04-2016 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 SUPERFAMILY SSF52402 245 394 5.99E-79 T 19-04-2016 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 SUPERFAMILY SSF52402 481 619 5.99E-79 T 19-04-2016 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 PANTHER PTHR11772 473 585 5.7E-138 T 19-04-2016 AMED_2192 38484ba8d117545f3d7d02aec5c9ae24 644 PANTHER PTHR11772 2 396 5.7E-138 T 19-04-2016 AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 PANTHER PTHR23501:SF7 19 458 7.5E-114 T 19-04-2016 AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 418 4.4E-77 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 PANTHER PTHR23501 19 458 7.5E-114 T 19-04-2016 AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 Pfam PF07690 Major Facilitator Superfamily 24 416 1.9E-53 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 SUPERFAMILY SSF103473 254 463 1.44E-68 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 SUPERFAMILY SSF103473 11 202 1.44E-68 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 Gene3D G3DSA:1.20.1250.20 20 198 4.5E-32 T 19-04-2016 AMED_8582 14c2e89c6d5a3f0ec38f6c0747d1b209 506 Gene3D G3DSA:1.20.1250.20 269 463 7.4E-21 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 SMART SM00532 2 428 1.2E-134 T 19-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMED_3171 c051fff093630693d31fd181310fc42d 663 Hamap MF_01588 DNA ligase [ligA]. 1 657 47.819 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMED_3171 c051fff093630693d31fd181310fc42d 663 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 105 134 - T 19-04-2016 IPR018239 NAD-dependent DNA ligase, active site AMED_3171 c051fff093630693d31fd181310fc42d 663 SMART SM00292 576 660 2.6E-5 T 19-04-2016 IPR001357 BRCT domain AMED_3171 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:1.10.287.610 2 63 4.1E-10 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:1.10.150.20 415 483 2.1E-18 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:2.40.50.140 299 370 5.7E-28 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_3171 c051fff093630693d31fd181310fc42d 663 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 2 298 5.8E-68 T 19-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMED_3171 c051fff093630693d31fd181310fc42d 663 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 651 6.9E-170 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMED_3171 c051fff093630693d31fd181310fc42d 663 SMART SM00278 460 479 27.0 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMED_3171 c051fff093630693d31fd181310fc42d 663 SMART SM00278 525 544 20.0 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMED_3171 c051fff093630693d31fd181310fc42d 663 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 301 375 2.7E-27 T 19-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMED_3171 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF47781 385 562 2.67E-42 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_3171 c051fff093630693d31fd181310fc42d 663 PANTHER PTHR23389:SF9 2 499 2.5E-111 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF50249 297 374 1.66E-23 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_3171 c051fff093630693d31fd181310fc42d 663 PIRSF PIRSF001604 1 661 8.4E-194 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMED_3171 c051fff093630693d31fd181310fc42d 663 Pfam PF12826 Helix-hairpin-helix motif 491 545 2.4E-7 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:1.10.150.20 486 562 3.5E-11 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF52113 578 655 1.22E-8 T 19-04-2016 IPR001357 BRCT domain AMED_3171 c051fff093630693d31fd181310fc42d 663 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 578 655 2.1E-4 T 19-04-2016 IPR001357 BRCT domain AMED_3171 c051fff093630693d31fd181310fc42d 663 SUPERFAMILY SSF56091 2 298 3.6E-73 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 PANTHER PTHR23389 2 499 2.5E-111 T 19-04-2016 AMED_3171 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:3.40.50.10190 577 658 9.0E-16 T 19-04-2016 IPR001357 BRCT domain AMED_3171 c051fff093630693d31fd181310fc42d 663 Gene3D G3DSA:3.30.470.30 109 230 3.6E-35 T 19-04-2016 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 SUPERFAMILY SSF46689 6 87 3.34E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 3.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 3.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 2.0E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 PANTHER PTHR30055 2 148 3.8E-33 T 19-04-2016 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 PANTHER PTHR30055:SF43 2 148 3.8E-33 T 19-04-2016 AMED_6332 bb81a2f550bb25eb43b7733647831902 180 SUPERFAMILY SSF48498 83 179 1.53E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6332 bb81a2f550bb25eb43b7733647831902 180 Gene3D G3DSA:1.10.357.10 7 180 6.1E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 209 2.4E-89 T 19-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 SUPERFAMILY SSF50447 5 214 1.06E-80 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 Gene3D G3DSA:4.10.960.10 81 162 1.2E-34 T 19-04-2016 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 Gene3D G3DSA:2.40.30.10 8 37 3.7E-12 T 19-04-2016 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 Gene3D G3DSA:2.40.30.10 163 213 3.7E-12 T 19-04-2016 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 ProSitePatterns PS00474 Ribosomal protein L3 signature. 106 129 - T 19-04-2016 IPR019926 Ribosomal protein L3, conserved site AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 PANTHER PTHR11229 1 215 3.6E-108 T 19-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 Pfam PF00297 Ribosomal protein L3 99 187 2.4E-16 T 19-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0677 4996fa6fb2ace24322d3e1d19789fa07 218 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 212 39.722 T 19-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0894 e1447a2fe4f8278f5d18699cc67c56f3 421 SUPERFAMILY SSF48264 106 351 1.31E-21 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0894 e1447a2fe4f8278f5d18699cc67c56f3 421 Gene3D G3DSA:1.10.630.10 204 351 6.6E-16 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3808 aeafa9d2ab3d913c359dc6026f7d73a6 259 Gene3D G3DSA:3.90.226.10 2 189 1.4E-43 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3808 aeafa9d2ab3d913c359dc6026f7d73a6 259 PANTHER PTHR11941 2 229 4.7E-43 T 19-04-2016 AMED_3808 aeafa9d2ab3d913c359dc6026f7d73a6 259 PANTHER PTHR11941:SF88 2 229 4.7E-43 T 19-04-2016 AMED_3808 aeafa9d2ab3d913c359dc6026f7d73a6 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 1 187 3.3E-30 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3808 aeafa9d2ab3d913c359dc6026f7d73a6 259 SUPERFAMILY SSF52096 2 222 1.45E-45 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6908 c616a50f4c660d6553fb92dcb4e493ff 576 ProSitePatterns PS00440 Acyltransferases ChoActase / COT / CPT family signature 2. 282 309 - T 19-04-2016 IPR000542 Acyltransferase ChoActase/COT/CPT GO:0016746 AMED_6908 c616a50f4c660d6553fb92dcb4e493ff 576 PANTHER PTHR22589 9 576 6.5E-160 T 19-04-2016 IPR000542 Acyltransferase ChoActase/COT/CPT GO:0016746 AMED_6908 c616a50f4c660d6553fb92dcb4e493ff 576 Pfam PF00755 Choline/Carnitine o-acyltransferase 17 570 1.4E-152 T 19-04-2016 IPR000542 Acyltransferase ChoActase/COT/CPT GO:0016746 AMED_6908 c616a50f4c660d6553fb92dcb4e493ff 576 SUPERFAMILY SSF52777 9 362 4.39E-94 T 19-04-2016 AMED_6908 c616a50f4c660d6553fb92dcb4e493ff 576 SUPERFAMILY SSF52777 370 574 5.17E-56 T 19-04-2016 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF00072 Response regulator receiver domain 613 723 1.1E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55874 391 557 1.44E-45 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 PANTHER PTHR24423 322 764 1.5E-121 T 19-04-2016 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 PANTHER PTHR24423 57 158 1.5E-121 T 19-04-2016 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 537 1.7E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 556 1.7E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 498 1.7E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 512 1.7E-15 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.450.20 733 853 5.3E-18 T 19-04-2016 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.40.50.2300 611 732 1.3E-36 T 19-04-2016 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 737 858 3.9E-11 T 19-04-2016 IPR000014 PAS domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00091 738 805 0.0014 T 19-04-2016 IPR000014 PAS domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF08448 PAS fold 745 856 3.4E-9 T 19-04-2016 IPR013656 PAS fold-4 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF08448 PAS fold 57 161 6.8E-7 T 19-04-2016 IPR013656 PAS fold-4 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00387 448 559 1.2E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.565.10 388 557 9.7E-46 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:3.30.450.20 69 161 7.4E-4 T 19-04-2016 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55785 731 853 2.09E-17 T 19-04-2016 IPR000014 PAS domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00331 1017 1232 9.7E-35 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Gene3D G3DSA:1.10.287.130 326 387 5.2E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 454 557 4.2E-24 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF52172 610 740 2.42E-36 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00388 335 402 2.2E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 1047 1232 4.2E-42 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55874 1264 1356 9.79E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SMART SM00448 611 723 8.6E-37 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF00512 His Kinase A (phospho-acceptor) domain 335 402 3.4E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF47384 320 403 9.22E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 SUPERFAMILY SSF55781 185 326 2.7E-5 T 19-04-2016 IPR029016 GAF domain-like AMED_5891 0401d24b787153c680db0a2d9531a24a 1361 Pfam PF13581 Histidine kinase-like ATPase domain 1241 1357 1.1E-23 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 PANTHER PTHR23309 385 494 4.7E-151 T 19-04-2016 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 SUPERFAMILY SSF48179 410 491 3.74E-19 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 PANTHER PTHR23309:SF12 11 308 4.7E-151 T 19-04-2016 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 PANTHER PTHR23309:SF12 385 494 4.7E-151 T 19-04-2016 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 Gene3D G3DSA:3.40.50.720 9 192 3.8E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 SUPERFAMILY SSF51735 8 190 2.8E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 Gene3D G3DSA:1.10.1040.10 410 486 1.2E-19 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 Gene3D G3DSA:1.10.1040.10 193 288 3.9E-21 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 SUPERFAMILY SSF48179 190 297 2.04E-25 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 188 4.7E-52 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 PANTHER PTHR23309 11 308 4.7E-151 T 19-04-2016 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 288 9.3E-21 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_8937 ae662f40077ca2f6d056a29107283a7c 507 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 410 491 4.8E-19 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_4277 026ccc5581a5bd54099aac83854613e9 288 Pfam PF00535 Glycosyl transferase family 2 6 158 4.5E-21 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_4277 026ccc5581a5bd54099aac83854613e9 288 Gene3D G3DSA:3.90.550.10 5 221 5.2E-31 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4277 026ccc5581a5bd54099aac83854613e9 288 SUPERFAMILY SSF53448 4 229 1.59E-40 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4277 026ccc5581a5bd54099aac83854613e9 288 PANTHER PTHR22916 6 264 2.4E-33 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 1003 16.785 T 19-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF52156 783 911 8.37E-36 T 19-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 411 1002 4.5E-226 T 19-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF00009 Elongation factor Tu GTP binding domain 504 664 2.3E-33 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PANTHER PTHR23115 473 832 1.3E-185 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF50447 905 1003 5.11E-27 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:2.40.30.10 906 1003 2.5E-33 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PANTHER PTHR23115:SF184 473 832 1.3E-185 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 ProSitePatterns PS01176 Initiation factor 2 signature. 956 978 - T 19-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:3.40.50.10050 803 883 2.2E-21 T 19-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 503 516 2.5E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 555 565 2.5E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 571 582 2.5E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PRINTS PR00315 GTP-binding elongation factor signature 607 616 2.5E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 419 465 1.1E-5 T 19-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 3 52 1.6E-14 T 19-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:3.40.50.300 498 663 3.0E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Pfam PF11987 Translation-initiation factor 2 792 894 2.4E-33 T 19-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 502 661 1.1E-32 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 Gene3D G3DSA:2.40.30.10 675 769 4.0E-20 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF52540 500 666 7.46E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 SUPERFAMILY SSF50447 677 760 5.3E-23 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PANTHER PTHR23115 857 1000 1.3E-185 T 19-04-2016 AMED_6338 9442d179cded9e7b46c5d0a8b615a236 1004 PANTHER PTHR23115:SF184 857 1000 1.3E-185 T 19-04-2016 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 SUPERFAMILY SSF50022 418 497 6.68E-25 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:3.50.50.60 24 119 4.8E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:3.50.50.60 330 388 4.8E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:3.50.50.60 167 243 4.8E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 Pfam PF00355 Rieske [2Fe-2S] domain 420 496 3.2E-14 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 PANTHER PTHR13847:SF44 1 390 1.1E-48 T 19-04-2016 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 Pfam PF01266 FAD dependent oxidoreductase 30 369 3.4E-39 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 Gene3D G3DSA:2.102.10.10 417 497 4.7E-29 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 SUPERFAMILY SSF51905 29 245 3.11E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 SUPERFAMILY SSF51905 330 387 3.11E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 PRINTS PR00162 Rieske 2Fe-2S subunit signature 471 483 2.3E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 PRINTS PR00162 Rieske 2Fe-2S subunit signature 450 461 2.3E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 PRINTS PR00162 Rieske 2Fe-2S subunit signature 483 495 2.3E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4293 e2e4d3cfeead5859e86a9abe93208a34 500 PANTHER PTHR13847 1 390 1.1E-48 T 19-04-2016 AMED_7648 d8bf4da10e12902c3c92068ce89c73b1 167 PANTHER PTHR33204:SF14 1 161 6.3E-64 T 19-04-2016 AMED_7648 d8bf4da10e12902c3c92068ce89c73b1 167 Pfam PF01638 HxlR-like helix-turn-helix 19 105 4.2E-23 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_7648 d8bf4da10e12902c3c92068ce89c73b1 167 Gene3D G3DSA:1.10.10.10 2 106 1.3E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7648 d8bf4da10e12902c3c92068ce89c73b1 167 PANTHER PTHR33204 1 161 6.3E-64 T 19-04-2016 AMED_7648 d8bf4da10e12902c3c92068ce89c73b1 167 SUPERFAMILY SSF46785 5 144 5.04E-45 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 Gene3D G3DSA:1.10.1740.10 6 76 3.6E-12 T 19-04-2016 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 Gene3D G3DSA:1.10.10.10 96 154 9.6E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 SUPERFAMILY SSF88946 7 77 5.1E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 154 4.5E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 SUPERFAMILY SSF88659 96 154 3.36E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 5 156 2.2E-45 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 Pfam PF08281 Sigma-70, region 4 98 150 4.1E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 PANTHER PTHR30173 7 154 1.9E-23 T 19-04-2016 AMED_1091 02b6441f82c1aa7672492cc90df323d4 162 Pfam PF04542 Sigma-70 region 2 15 69 6.5E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 SUPERFAMILY SSF52242 177 254 2.51E-6 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 Pfam PF13411 MerR HTH family regulatory protein 17 77 8.7E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 PANTHER PTHR30204 6 106 1.4E-12 T 19-04-2016 AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 SUPERFAMILY SSF46955 16 97 7.33E-13 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 Gene3D G3DSA:1.10.1660.10 17 105 6.8E-13 T 19-04-2016 AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 Pfam PF02607 B12 binding domain 96 152 5.8E-5 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_4467 8e7a8be1ddbab519ac99e4a9774b6707 290 SMART SM00422 14 82 1.1E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 Gene3D G3DSA:1.10.10.10 155 212 1.8E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5508 7616e374d2b2cae61380baea518913f5 215 SUPERFAMILY SSF46894 144 213 3.4E-22 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 205 1.2E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 Pfam PF00072 Response regulator receiver domain 9 123 2.9E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5508 7616e374d2b2cae61380baea518913f5 215 PANTHER PTHR26402 6 214 1.1E-66 T 19-04-2016 AMED_5508 7616e374d2b2cae61380baea518913f5 215 SMART SM00448 6 123 4.0E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5508 7616e374d2b2cae61380baea518913f5 215 Gene3D G3DSA:3.40.50.2300 5 154 1.2E-32 T 19-04-2016 AMED_5508 7616e374d2b2cae61380baea518913f5 215 SMART SM00421 149 206 7.8E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 SUPERFAMILY SSF52172 5 128 2.28E-30 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5508 7616e374d2b2cae61380baea518913f5 215 PANTHER PTHR26402:SF151 6 214 1.1E-66 T 19-04-2016 AMED_5508 7616e374d2b2cae61380baea518913f5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 7.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 7.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 7.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5508 7616e374d2b2cae61380baea518913f5 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 Pfam PF02634 FdhD/NarQ family 1 242 2.9E-81 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 Hamap MF_00187 Protein FdhD [fdhD]. 1 243 29.576 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 Gene3D G3DSA:3.10.20.10 1 90 2.7E-25 T 19-04-2016 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 Gene3D G3DSA:3.40.140.10 109 245 3.7E-54 T 19-04-2016 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 PANTHER PTHR30592 1 242 7.5E-91 T 19-04-2016 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 SUPERFAMILY SSF53927 1 242 4.21E-73 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 PANTHER PTHR30592:SF1 1 242 7.5E-91 T 19-04-2016 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 2 242 2.4E-45 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_4567 6691f0c845251fe9100db18d4694f2a2 247 PIRSF PIRSF015626 1 246 5.8E-82 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_3219 7f50b3d00dccd055c4c119e116c7c7b1 234 Gene3D G3DSA:1.20.950.10 27 227 3.4E-9 T 19-04-2016 AMED_3219 7f50b3d00dccd055c4c119e116c7c7b1 234 SUPERFAMILY SSF81343 10 234 3.11E-45 T 19-04-2016 AMED_3219 7f50b3d00dccd055c4c119e116c7c7b1 234 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 19 233 2.8E-61 T 19-04-2016 IPR011138 Succinate dehydrogenase cytochrome b558 subunit UniPathway: UPA00223 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 PANTHER PTHR10357:SF166 577 736 4.1E-135 T 19-04-2016 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 PANTHER PTHR10357:SF166 174 332 4.1E-135 T 19-04-2016 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 PANTHER PTHR10357:SF166 1 126 4.1E-135 T 19-04-2016 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.20.20.80 220 294 3.5E-70 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.20.20.80 4 93 3.5E-70 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.20.20.80 585 698 3.5E-70 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.20.20.80 453 492 3.5E-70 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:3.30.1590.10 94 206 3.9E-39 T 19-04-2016 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:1.10.150.200 319 419 6.4E-11 T 19-04-2016 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 PANTHER PTHR10357 577 736 4.1E-135 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 PANTHER PTHR10357 174 332 4.1E-135 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 PANTHER PTHR10357 1 126 4.1E-135 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 SUPERFAMILY SSF51445 3 676 1.17E-124 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 755 7.9E-259 T 19-04-2016 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 SMART SM00642 1 381 4.5E-6 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Pfam PF00128 Alpha amylase, catalytic domain 27 233 6.3E-14 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2593 c4b7fffb6dc803dbdeabffcf1bdd4065 758 Gene3D G3DSA:1.10.10.470 493 581 6.8E-19 T 19-04-2016 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 1.0E-20 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 PANTHER PTHR22604:SF105 3 256 8.5E-67 T 19-04-2016 AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 SUPERFAMILY SSF51735 3 153 1.9E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 Gene3D G3DSA:3.40.50.720 3 145 2.3E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 SUPERFAMILY SSF55347 128 294 1.31E-36 T 19-04-2016 AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 Gene3D G3DSA:3.30.360.10 146 320 4.1E-34 T 19-04-2016 AMED_0642 47e9eba083c856da9353fecd76a3f2df 330 PANTHER PTHR22604 3 256 8.5E-67 T 19-04-2016 AMED_1226 48412f9e091c8a7fb3621cf1b64db760 280 PANTHER PTHR11101:SF54 11 257 8.1E-85 T 19-04-2016 AMED_1226 48412f9e091c8a7fb3621cf1b64db760 280 Pfam PF01384 Phosphate transporter family 71 220 6.4E-45 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_1226 48412f9e091c8a7fb3621cf1b64db760 280 PANTHER PTHR11101 11 257 8.1E-85 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 SUPERFAMILY SSF54637 26 130 5.47E-38 T 19-04-2016 IPR029069 HotDog domain AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 Pfam PF13622 Thioesterase-like superfamily 42 292 1.9E-62 T 19-04-2016 AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 Gene3D G3DSA:3.10.129.10 141 295 1.3E-50 T 19-04-2016 IPR029069 HotDog domain AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 PANTHER PTHR11066 26 297 8.2E-104 T 19-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 SUPERFAMILY SSF54637 133 293 3.57E-47 T 19-04-2016 IPR029069 HotDog domain AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 PANTHER PTHR11066:SF34 26 297 8.2E-104 T 19-04-2016 AMED_3844 3c5e352ff47077d24dede7c9d8fc77d1 297 Gene3D G3DSA:3.10.129.10 26 131 3.7E-45 T 19-04-2016 IPR029069 HotDog domain AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 PANTHER PTHR14025:SF21 399 1151 0.0 T 19-04-2016 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SMART SM00490 848 932 3.9E-16 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 157 1104 0.0 T 19-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SUPERFAMILY SSF52540 804 1012 1.42E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SUPERFAMILY SSF141259 490 570 1.96E-18 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 39 1129 28.303 T 19-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Gene3D G3DSA:3.30.2060.10 141 214 9.2E-16 T 19-04-2016 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SUPERFAMILY SSF52540 33 362 7.65E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SUPERFAMILY SSF143517 1021 1178 2.62E-34 T 19-04-2016 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Pfam PF02559 CarD-like/TRCF domain 498 597 8.8E-31 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SUPERFAMILY SSF52540 548 805 3.87E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SMART SM01058 497 598 5.7E-47 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SMART SM00487 622 814 1.3E-29 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SUPERFAMILY SSF52540 373 470 3.72E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 SMART SM00982 1031 1129 1.5E-36 T 19-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Pfam PF00270 DEAD/DEAH box helicase 647 788 2.4E-17 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Gene3D G3DSA:3.40.50.300 807 985 7.1E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Pfam PF03461 TRCF domain 1032 1113 3.0E-24 T 19-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 PANTHER PTHR14025 399 1151 0.0 T 19-04-2016 AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Gene3D G3DSA:3.40.50.300 611 806 2.0E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8219 316bdc407e214d2cdb209010116f4d8e 1184 Pfam PF00271 Helicase conserved C-terminal domain 832 931 4.8E-14 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_5244 615b609c497e513044824864e2c76746 270 Gene3D G3DSA:3.30.43.10 2 54 6.5E-24 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_5244 615b609c497e513044824864e2c76746 270 PANTHER PTHR11908:SF68 1 268 5.6E-79 T 19-04-2016 AMED_5244 615b609c497e513044824864e2c76746 270 Gene3D G3DSA:3.30.390.50 180 268 9.7E-21 T 19-04-2016 AMED_5244 615b609c497e513044824864e2c76746 270 SMART SM01092 180 268 6.0E-23 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_5244 615b609c497e513044824864e2c76746 270 SUPERFAMILY SSF55447 179 268 1.83E-20 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_5244 615b609c497e513044824864e2c76746 270 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 8.5E-50 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_5244 615b609c497e513044824864e2c76746 270 PANTHER PTHR11908 1 268 5.6E-79 T 19-04-2016 AMED_5244 615b609c497e513044824864e2c76746 270 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 200 267 1.1E-10 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_5244 615b609c497e513044824864e2c76746 270 SUPERFAMILY SSF56176 2 174 2.02E-53 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_5244 615b609c497e513044824864e2c76746 270 Gene3D G3DSA:3.30.465.10 59 174 1.5E-34 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 SUPERFAMILY SSF51735 113 262 5.62E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 Gene3D G3DSA:3.90.180.10 1 145 3.3E-42 T 19-04-2016 IPR011032 GroES-like AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 SMART SM00829 7 308 2.4E-23 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 PANTHER PTHR11695 12 309 3.6E-92 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 95 8.8E-10 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 Gene3D G3DSA:3.40.50.720 146 255 9.2E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 SUPERFAMILY SSF50129 3 146 1.16E-36 T 19-04-2016 IPR011032 GroES-like AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 PANTHER PTHR11695:SF294 12 309 3.6E-92 T 19-04-2016 AMED_6563 24e4fa5d8188e27253deb8a925ac1ced 311 Pfam PF13602 Zinc-binding dehydrogenase 187 308 1.9E-20 T 19-04-2016 AMED_8765 7c538e7e673e197e206521944f1d4874 111 Pfam PF07110 EthD domain 13 87 1.1E-7 T 19-04-2016 IPR009799 EthD domain AMED_8765 7c538e7e673e197e206521944f1d4874 111 Gene3D G3DSA:3.30.70.900 1 96 1.6E-28 T 19-04-2016 AMED_8765 7c538e7e673e197e206521944f1d4874 111 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 1 93 1.9E-20 T 19-04-2016 IPR009799 EthD domain AMED_8765 7c538e7e673e197e206521944f1d4874 111 SUPERFAMILY SSF54909 1 97 3.07E-25 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8765 7c538e7e673e197e206521944f1d4874 111 PANTHER PTHR40260 1 103 6.5E-12 T 19-04-2016 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 SUPERFAMILY SSF81338 6 222 3.01E-51 T 19-04-2016 IPR023271 Aquaporin-like AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 60 79 1.5E-29 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 23 47 1.5E-29 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 202 222 1.5E-29 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 154 176 1.5E-29 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PRINTS PR00783 Major intrinsic protein family signature 115 133 1.5E-29 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PANTHER PTHR19139:SF147 1 222 2.7E-62 T 19-04-2016 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 Gene3D G3DSA:1.20.1080.10 1 222 3.7E-67 T 19-04-2016 IPR023271 Aquaporin-like AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 Pfam PF00230 Major intrinsic protein 11 219 5.1E-35 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 ProSitePatterns PS00221 MIP family signature. 41 49 - T 19-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 AMED_0926 bc68cc838ff0258bdba53c3ac6df5547 226 PANTHER PTHR19139 1 222 2.7E-62 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_1871 96368203ba846020401fcb45a717e2e4 813 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 175 722 3.5E-172 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 SUPERFAMILY SSF56003 131 785 9.68E-201 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 374 467 2.8E-67 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 637 790 2.8E-67 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 SMART SM01008 23 139 3.9E-50 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1871 96368203ba846020401fcb45a717e2e4 813 PANTHER PTHR11908:SF76 606 791 2.3E-284 T 19-04-2016 AMED_1871 96368203ba846020401fcb45a717e2e4 813 PANTHER PTHR11908:SF76 5 589 2.3E-284 T 19-04-2016 AMED_1871 96368203ba846020401fcb45a717e2e4 813 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 23 139 6.4E-27 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 468 636 1.9E-46 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 PANTHER PTHR11908 606 791 2.3E-284 T 19-04-2016 AMED_1871 96368203ba846020401fcb45a717e2e4 813 PANTHER PTHR11908 5 589 2.3E-284 T 19-04-2016 AMED_1871 96368203ba846020401fcb45a717e2e4 813 SUPERFAMILY SSF54665 9 160 3.01E-44 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.90.1170.50 9 127 1.1E-39 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 190 293 2.8E-35 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 128 189 2.6E-41 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1871 96368203ba846020401fcb45a717e2e4 813 Gene3D G3DSA:3.30.365.10 296 371 2.6E-41 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_0928 ed84174f4739a28f187afed644940cb9 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 4.6E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0928 ed84174f4739a28f187afed644940cb9 195 PANTHER PTHR30055 1 186 5.1E-23 T 19-04-2016 AMED_0928 ed84174f4739a28f187afed644940cb9 195 PANTHER PTHR30055:SF75 1 186 5.1E-23 T 19-04-2016 AMED_0928 ed84174f4739a28f187afed644940cb9 195 Gene3D G3DSA:1.10.10.60 10 52 4.1E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0928 ed84174f4739a28f187afed644940cb9 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0928 ed84174f4739a28f187afed644940cb9 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0928 ed84174f4739a28f187afed644940cb9 195 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_0928 ed84174f4739a28f187afed644940cb9 195 SUPERFAMILY SSF46689 10 75 8.51E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0928 ed84174f4739a28f187afed644940cb9 195 Gene3D G3DSA:1.10.357.10 53 182 4.2E-16 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:3.40.50.1820 1 133 5.0E-70 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:3.40.50.1820 219 338 5.0E-70 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:1.10.3020.10 134 218 1.5E-27 T 19-04-2016 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 SMART SM00939 305 559 7.7E-88 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 1 564 4.6E-154 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 3 278 9.1E-59 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 SUPERFAMILY SSF49785 333 563 2.55E-66 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 PANTHER PTHR11731:SF151 1 144 5.9E-40 T 19-04-2016 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 PANTHER PTHR11731:SF151 209 326 5.9E-40 T 19-04-2016 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 SUPERFAMILY SSF53474 1 341 7.71E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 PANTHER PTHR11731 1 144 5.9E-40 T 19-04-2016 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 PANTHER PTHR11731 209 326 5.9E-40 T 19-04-2016 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 323 558 3.7E-51 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_5341 b4d6c68eb91221404eb6cef9a9a50462 569 Gene3D G3DSA:2.60.120.260 339 566 1.9E-83 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8697 70b8ae90867422d71058937b948e5ee8 281 Gene3D G3DSA:3.40.50.300 7 240 3.6E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8697 70b8ae90867422d71058937b948e5ee8 281 Pfam PF00005 ABC transporter 30 173 9.2E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8697 70b8ae90867422d71058937b948e5ee8 281 PANTHER PTHR24220 13 249 4.2E-59 T 19-04-2016 AMED_8697 70b8ae90867422d71058937b948e5ee8 281 SMART SM00382 36 223 3.4E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8697 70b8ae90867422d71058937b948e5ee8 281 SUPERFAMILY SSF52540 10 235 1.28E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8697 70b8ae90867422d71058937b948e5ee8 281 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Gene3D G3DSA:3.90.190.20 322 463 1.4E-51 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 406 2.8E-24 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 8 464 37.659 T 19-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Pfam PF08245 Mur ligase middle domain 117 299 4.2E-27 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 SUPERFAMILY SSF53244 319 460 1.05E-43 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 SUPERFAMILY SSF51984 9 100 5.49E-23 T 19-04-2016 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Gene3D G3DSA:3.40.1190.10 101 321 6.5E-76 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Pfam PF01225 Mur ligase family, catalytic domain 12 113 4.4E-26 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 11 458 6.4E-142 T 19-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 PANTHER PTHR23135:SF5 3 453 1.3E-176 T 19-04-2016 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 SUPERFAMILY SSF53623 98 318 1.49E-55 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 Gene3D G3DSA:3.40.50.720 11 100 2.0E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6250 ad41beff2c1e17c8d4588c9c5beec1a4 465 PANTHER PTHR23135 3 453 1.3E-176 T 19-04-2016 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 Pfam PF00501 AMP-binding enzyme 17 413 1.2E-69 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 SUPERFAMILY SSF56801 4 503 2.88E-121 T 19-04-2016 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:3.30.300.30 411 502 2.1E-26 T 19-04-2016 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 PANTHER PTHR24095 5 503 2.0E-104 T 19-04-2016 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 4 500 3.1E-127 T 19-04-2016 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:3.40.50.980 173 334 8.2E-27 T 19-04-2016 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:3.40.50.980 13 172 2.8E-25 T 19-04-2016 AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 Pfam PF13193 AMP-binding enzyme C-terminal domain 422 494 3.6E-17 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6968 cdb4dc24a0815bb15ed2deb009660587 504 Gene3D G3DSA:2.30.38.10 335 407 4.8E-15 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 PANTHER PTHR24222:SF30 580 1053 6.3E-87 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 PANTHER PTHR24222:SF30 24 40 6.3E-87 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 ProSitePatterns PS00211 ABC transporters family signature. 452 466 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 ProSitePatterns PS00211 ABC transporters family signature. 973 987 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Pfam PF00664 ABC transporter transmembrane region 26 272 5.7E-23 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 SMART SM00382 880 1049 3.8E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 SMART SM00382 360 521 6.6E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 PANTHER PTHR24222 580 1053 6.3E-87 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 PANTHER PTHR24222 24 40 6.3E-87 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 549 1032 4.7E-125 T 19-04-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF52540 329 515 6.36E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Pfam PF00005 ABC transporter 871 1003 7.8E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Pfam PF00005 ABC transporter 355 483 1.2E-20 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF52540 847 1052 2.89E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:3.40.50.300 856 1053 8.2E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:3.40.50.300 341 514 1.9E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:1.20.1560.10 21 324 3.6E-40 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 Gene3D G3DSA:1.20.1560.10 548 836 1.7E-22 T 19-04-2016 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF90123 549 840 9.81E-28 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_0165 7a2427e745251451df6ab791cb5e3f45 1057 SUPERFAMILY SSF90123 20 322 1.05E-44 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_3608 9c25e629eb6cd2866b050e195f550c22 134 Gene3D G3DSA:3.30.750.24 19 123 2.9E-21 T 19-04-2016 IPR002645 STAS domain AMED_3608 9c25e629eb6cd2866b050e195f550c22 134 Pfam PF01740 STAS domain 21 114 4.7E-12 T 19-04-2016 IPR002645 STAS domain AMED_3608 9c25e629eb6cd2866b050e195f550c22 134 PANTHER PTHR33495 2 131 6.9E-15 T 19-04-2016 AMED_3608 9c25e629eb6cd2866b050e195f550c22 134 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 19 118 1.5E-16 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_3608 9c25e629eb6cd2866b050e195f550c22 134 SUPERFAMILY SSF52091 19 127 5.89E-18 T 19-04-2016 IPR002645 STAS domain AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 Gene3D G3DSA:1.20.1250.20 37 202 9.6E-26 T 19-04-2016 AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 Gene3D G3DSA:1.20.1250.20 219 404 7.7E-20 T 19-04-2016 AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 ProSitePatterns PS00217 Sugar transport proteins signature 2. 102 127 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 PANTHER PTHR23508 1 423 6.8E-238 T 19-04-2016 AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 PANTHER PTHR23508:SF17 1 423 6.8E-238 T 19-04-2016 AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 Pfam PF07690 Major Facilitator Superfamily 31 359 1.0E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7083 34346ec5d4c0023b433e509da328dfa2 428 SUPERFAMILY SSF103473 1 406 3.01E-69 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 Pfam PF12833 Helix-turn-helix domain 230 310 1.2E-20 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 304 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 Pfam PF12852 Cupin 2 192 9.0E-51 T 19-04-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 Gene3D G3DSA:1.10.10.60 205 261 4.9E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 SUPERFAMILY SSF46689 260 310 5.73E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 SUPERFAMILY SSF46689 207 258 7.17E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 SMART SM00342 224 308 7.0E-31 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 Gene3D G3DSA:1.10.10.60 262 310 3.4E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 PANTHER PTHR11019 15 110 2.6E-61 T 19-04-2016 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 PANTHER PTHR11019 134 311 2.6E-61 T 19-04-2016 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 PANTHER PTHR11019:SF77 15 110 2.6E-61 T 19-04-2016 AMED_4696 7084a16eed485dc8cff0f6654f8f4170 311 PANTHER PTHR11019:SF77 134 311 2.6E-61 T 19-04-2016 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 SUPERFAMILY SSF56645 8 239 3.66E-68 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.6E-48 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 PANTHER PTHR10909 4 375 1.2E-158 T 19-04-2016 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 SUPERFAMILY SSF47203 226 376 1.1E-55 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 PIRSF PIRSF016578 3 365 1.9E-16 T 19-04-2016 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 126 138 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 PANTHER PTHR10909:SF305 4 375 1.2E-158 T 19-04-2016 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 119 2.3E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 Gene3D G3DSA:1.10.540.10 9 120 3.5E-30 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 Gene3D G3DSA:2.40.110.10 123 215 1.1E-35 T 19-04-2016 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 Gene3D G3DSA:1.20.140.10 216 375 3.4E-68 T 19-04-2016 AMED_8429 7f86e68209a9c6958566aaa2c3b2f801 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 214 2.4E-23 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 Pfam PF04542 Sigma-70 region 2 17 75 2.9E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 SUPERFAMILY SSF88946 8 76 1.37E-12 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 PANTHER PTHR30173:SF7 1 378 3.6E-153 T 19-04-2016 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 PANTHER PTHR30173 1 378 3.6E-153 T 19-04-2016 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 Pfam PF08281 Sigma-70, region 4 112 163 6.3E-7 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 Gene3D G3DSA:1.25.40.10 361 391 3.5E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 Gene3D G3DSA:1.10.10.10 105 165 5.8E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4702 19b772944f498c83c2139b0326cde4a5 427 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 165 2.5E-12 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 SUPERFAMILY SSF88659 106 165 6.32E-9 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4702 19b772944f498c83c2139b0326cde4a5 427 Gene3D G3DSA:1.10.1740.10 8 75 2.3E-10 T 19-04-2016 AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 SMART SM00854 3 244 5.5E-47 T 19-04-2016 IPR019079 Capsule synthesis protein, CapA AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 PANTHER PTHR33393:SF2 21 122 1.0E-20 T 19-04-2016 AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 PANTHER PTHR33393 148 265 1.0E-20 T 19-04-2016 AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 SUPERFAMILY SSF56300 2 115 1.39E-28 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 SUPERFAMILY SSF56300 158 242 1.39E-28 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 PANTHER PTHR33393 21 122 1.0E-20 T 19-04-2016 AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 3 243 8.3E-48 T 19-04-2016 IPR019079 Capsule synthesis protein, CapA AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 Gene3D G3DSA:3.60.21.30 154 231 4.8E-11 T 19-04-2016 AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 Gene3D G3DSA:3.60.21.30 24 115 4.8E-11 T 19-04-2016 AMED_8953 866c2a43ff0da7c6d17d3237aadfec7f 312 PANTHER PTHR33393:SF2 148 265 1.0E-20 T 19-04-2016 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 PANTHER PTHR23029 136 401 2.3E-92 T 19-04-2016 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 SUPERFAMILY SSF53098 2 125 4.68E-33 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 PIRSF PIRSF036922 1 402 1.7E-170 T 19-04-2016 IPR014636 RNase H, phosphoglycerate mutase domain-containing AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 Pfam PF13456 Reverse transcriptase-like 6 126 1.9E-26 T 19-04-2016 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 SUPERFAMILY SSF53254 195 401 6.28E-56 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 SMART SM00855 197 357 4.4E-20 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 Gene3D G3DSA:3.40.50.1240 194 402 1.1E-57 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 198 396 8.3E-59 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 Gene3D G3DSA:3.30.420.10 1 130 7.5E-23 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1174 3b4b8c77b5e6c921c8d99fafde77490f 402 PANTHER PTHR23029:SF34 136 401 2.3E-92 T 19-04-2016 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 SMART SM00421 116 170 0.0075 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 SUPERFAMILY SSF88946 8 92 2.75E-16 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 Pfam PF04542 Sigma-70 region 2 18 82 2.3E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 Gene3D G3DSA:1.10.1740.10 8 100 2.9E-19 T 19-04-2016 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 PANTHER PTHR30173 8 162 1.2E-30 T 19-04-2016 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 Pfam PF08281 Sigma-70, region 4 112 162 4.3E-16 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 SUPERFAMILY SSF88659 104 165 3.27E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 163 4.5E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0076 95b2e99a5ab509949120284621f10fbd 173 Gene3D G3DSA:1.10.10.10 107 168 2.0E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 Gene3D G3DSA:3.30.450.40 82 247 4.5E-42 T 19-04-2016 IPR029016 GAF domain-like AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 SUPERFAMILY SSF46785 9 77 5.01E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 SUPERFAMILY SSF55781 71 246 1.83E-41 T 19-04-2016 IPR029016 GAF domain-like AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 Gene3D G3DSA:1.10.10.10 8 69 4.7E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 SMART SM00346 7 96 3.0E-13 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 Pfam PF09339 IclR helix-turn-helix domain 10 60 2.0E-12 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 Pfam PF01614 Bacterial transcriptional regulator 128 243 2.5E-20 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 PANTHER PTHR30136:SF16 9 246 4.1E-57 T 19-04-2016 AMED_7580 8dce49deaf6f1530ba9474a93aef72fb 250 PANTHER PTHR30136 9 246 4.1E-57 T 19-04-2016 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 127 142 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 172 185 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 346 368 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 98 116 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PRINTS PR00412 Epoxide hydrolase signature 186 199 1.1E-16 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PIRSF PIRSF001112 2 373 7.6E-118 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_6212 83531bfe400206823341bce78a22bb1d 373 Gene3D G3DSA:3.40.50.1820 3 371 7.3E-129 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6212 83531bfe400206823341bce78a22bb1d 373 Pfam PF06441 Epoxide hydrolase N terminus 4 107 6.8E-29 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_6212 83531bfe400206823341bce78a22bb1d 373 PANTHER PTHR21661 4 373 2.5E-105 T 19-04-2016 AMED_6212 83531bfe400206823341bce78a22bb1d 373 SUPERFAMILY SSF53474 2 370 4.63E-92 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6212 83531bfe400206823341bce78a22bb1d 373 PANTHER PTHR21661:SF35 4 373 2.5E-105 T 19-04-2016 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 SUPERFAMILY SSF53383 44 445 1.87E-120 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1196 7feb78da0161d2246580413bb543d1a4 451 Pfam PF00202 Aminotransferase class-III 46 445 1.8E-116 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 PANTHER PTHR11986:SF17 12 451 2.4E-181 T 19-04-2016 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 261 298 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 PANTHER PTHR11986 12 451 2.4E-181 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 Gene3D G3DSA:3.40.640.10 84 327 8.0E-75 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 33 446 1.8E-173 T 19-04-2016 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AMED_1196 7feb78da0161d2246580413bb543d1a4 451 Gene3D G3DSA:3.90.1150.10 328 446 2.4E-38 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2232 234409cf4a37f1a8477d75c0fe1eb6ae 102 Pfam PF06013 Proteins of 100 residues with WXG 3 75 2.1E-6 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_2232 234409cf4a37f1a8477d75c0fe1eb6ae 102 Gene3D G3DSA:1.10.287.1060 1 86 2.1E-11 T 19-04-2016 AMED_2232 234409cf4a37f1a8477d75c0fe1eb6ae 102 SUPERFAMILY SSF140453 1 84 7.32E-11 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_1302 91e9d44c2db9d70eed481223fd088bb8 202 PANTHER PTHR38011 2 199 3.5E-14 T 19-04-2016 AMED_1302 91e9d44c2db9d70eed481223fd088bb8 202 SUPERFAMILY SSF53597 8 198 2.75E-19 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_1302 91e9d44c2db9d70eed481223fd088bb8 202 Pfam PF01872 RibD C-terminal domain 115 187 1.5E-7 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_1302 91e9d44c2db9d70eed481223fd088bb8 202 Gene3D G3DSA:3.40.430.10 4 200 3.9E-24 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 PIRSF PIRSF000105 1 281 2.9E-80 T 19-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 SUPERFAMILY SSF48179 181 279 3.83E-29 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 179 4.0E-51 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 Gene3D G3DSA:1.10.1040.10 184 279 9.1E-29 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 SUPERFAMILY SSF51735 1 181 1.43E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 Gene3D G3DSA:3.40.50.720 2 183 2.1E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 PANTHER PTHR23309 2 279 9.0E-105 T 19-04-2016 AMED_4765 96355eeffadfcf3539cb12b1b26cad46 281 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 182 278 2.3E-29 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 121 8.9E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 Gene3D G3DSA:1.10.540.10 1 121 3.0E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 Gene3D G3DSA:1.20.140.10 221 380 8.9E-61 T 19-04-2016 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 SUPERFAMILY SSF56645 1 242 1.31E-67 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 205 7.2E-22 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 PANTHER PTHR10909:SF278 1 379 8.9E-120 T 19-04-2016 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 127 139 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 SUPERFAMILY SSF47203 227 381 5.96E-53 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 378 6.9E-46 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 Gene3D G3DSA:2.40.110.10 124 220 6.7E-32 T 19-04-2016 AMED_8402 06d2de284359dfe0dbd5cc8c970a1f94 389 PANTHER PTHR10909 1 379 8.9E-120 T 19-04-2016 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 PANTHER PTHR31616 261 841 9.4E-113 T 19-04-2016 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 24 251 8.3E-36 T 19-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 SUPERFAMILY SSF56784 25 251 1.34E-32 T 19-04-2016 IPR023214 HAD-like domain AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Gene3D G3DSA:3.40.50.1000 175 257 1.1E-35 T 19-04-2016 IPR023214 HAD-like domain AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Gene3D G3DSA:3.40.50.1000 24 100 1.1E-35 T 19-04-2016 IPR023214 HAD-like domain AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Pfam PF00723 Glycosyl hydrolases family 15 475 784 9.7E-30 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Pfam PF02358 Trehalose-phosphatase 28 217 4.6E-28 T 19-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 Gene3D G3DSA:1.50.10.10 477 842 3.0E-76 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 SUPERFAMILY SSF48208 462 842 1.85E-88 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_8670 83ee267f3078e2f5bb3febcc4c1a8dfa 844 PANTHER PTHR31616:SF0 261 841 9.4E-113 T 19-04-2016 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 PANTHER PTHR40631 484 796 1.4E-162 T 19-04-2016 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 Pfam PF00652 Ricin-type beta-trefoil lectin domain 347 473 3.7E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 156 167 7.9E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 200 211 7.9E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 229 241 7.9E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 PRINTS PR00134 Glycosyl hydrolase family 10 signature 114 126 7.9E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 SUPERFAMILY SSF75005 510 791 2.36E-28 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 Pfam PF03664 Glycosyl hydrolase family 62 483 765 5.8E-62 T 19-04-2016 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 SMART SM00458 348 476 2.5E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 PANTHER PTHR40631:SF2 484 796 1.4E-162 T 19-04-2016 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 SUPERFAMILY SSF51445 43 336 1.49E-110 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 Gene3D G3DSA:2.80.10.50 345 474 1.0E-39 T 19-04-2016 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 SMART SM00633 83 336 1.1E-125 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 Gene3D G3DSA:3.20.20.80 43 338 1.1E-115 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 SUPERFAMILY SSF50370 345 474 6.16E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 Gene3D G3DSA:2.115.10.20 509 725 2.7E-8 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 Pfam PF00331 Glycosyl hydrolase family 10 42 335 2.5E-109 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3995 b909098fc57737f6a2f7b65e22d9ff7f 799 ProSitePatterns PS00591 Glycosyl hydrolases family 10 (GH10) active site. 262 272 - T 19-04-2016 IPR031158 Glycosyl hydrolases family 10, active site MetaCyc: PWY-6784 AMED_4763 463c5f987517eb93321796e1a6ca6f68 259 Gene3D G3DSA:3.40.50.1820 12 246 1.1E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4763 463c5f987517eb93321796e1a6ca6f68 259 SUPERFAMILY SSF53474 8 245 1.22E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4763 463c5f987517eb93321796e1a6ca6f68 259 PANTHER PTHR11487 1 255 5.4E-72 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_4763 463c5f987517eb93321796e1a6ca6f68 259 Pfam PF00975 Thioesterase domain 18 237 3.6E-40 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 SUPERFAMILY SSF46785 3 81 3.02E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4965 53cf67694d7bc0b390239373786f44c3 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.4E-5 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.4E-5 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.4E-5 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 Gene3D G3DSA:3.40.190.10 94 184 8.4E-17 T 19-04-2016 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 Pfam PF03466 LysR substrate binding domain 94 296 1.1E-33 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4965 53cf67694d7bc0b390239373786f44c3 308 PANTHER PTHR30346 3 306 3.5E-70 T 19-04-2016 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 Gene3D G3DSA:1.10.10.10 2 81 4.1E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4965 53cf67694d7bc0b390239373786f44c3 308 SUPERFAMILY SSF53850 94 300 8.84E-32 T 19-04-2016 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.3E-17 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 Gene3D G3DSA:3.40.190.10 185 269 7.7E-20 T 19-04-2016 AMED_4965 53cf67694d7bc0b390239373786f44c3 308 PANTHER PTHR30346:SF2 3 306 3.5E-70 T 19-04-2016 AMED_1115 05f4eeffce5f1042a73907937c148465 302 Gene3D G3DSA:3.40.50.1820 14 297 1.1E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1115 05f4eeffce5f1042a73907937c148465 302 Pfam PF12146 Serine aminopeptidase, S33 37 285 1.1E-22 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_1115 05f4eeffce5f1042a73907937c148465 302 PANTHER PTHR10992 14 203 1.9E-40 T 19-04-2016 AMED_1115 05f4eeffce5f1042a73907937c148465 302 PANTHER PTHR10992 239 299 1.9E-40 T 19-04-2016 AMED_1115 05f4eeffce5f1042a73907937c148465 302 SUPERFAMILY SSF53474 10 295 6.56E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3560 256a26e3947adb795d83287028302801 267 Gene3D G3DSA:3.40.50.720 11 260 6.9E-83 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 1.5E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 5.9E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 5.9E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 5.9E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PANTHER PTHR24322 170 202 3.5E-60 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 PANTHER PTHR24322 22 153 3.5E-60 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3560 256a26e3947adb795d83287028302801 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3560 256a26e3947adb795d83287028302801 267 SUPERFAMILY SSF51735 17 260 8.2E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3560 256a26e3947adb795d83287028302801 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 260 2.2E-57 T 19-04-2016 AMED_3560 256a26e3947adb795d83287028302801 267 PANTHER PTHR24322:SF513 170 202 3.5E-60 T 19-04-2016 AMED_3560 256a26e3947adb795d83287028302801 267 PANTHER PTHR24322:SF513 22 153 3.5E-60 T 19-04-2016 AMED_4697 8facf08cd4dc4befe28f046c8a621eba 273 PANTHER PTHR14194:SF59 6 269 1.2E-77 T 19-04-2016 AMED_4697 8facf08cd4dc4befe28f046c8a621eba 273 Gene3D G3DSA:3.40.50.720 3 202 2.4E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4697 8facf08cd4dc4befe28f046c8a621eba 273 SUPERFAMILY SSF51735 3 264 1.07E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4697 8facf08cd4dc4befe28f046c8a621eba 273 PANTHER PTHR14194 6 269 1.2E-77 T 19-04-2016 AMED_4697 8facf08cd4dc4befe28f046c8a621eba 273 Pfam PF13460 NAD(P)H-binding 9 169 7.2E-8 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 4 163 3.0E-20 T 19-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 Pfam PF13563 2'-5' RNA ligase superfamily 17 149 2.6E-8 T 19-04-2016 AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 164 15.79 T 19-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 SUPERFAMILY SSF55144 4 164 1.19E-26 T 19-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 PANTHER PTHR35561:SF1 4 166 1.3E-23 T 19-04-2016 AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 Gene3D G3DSA:3.90.1140.10 4 166 9.1E-33 T 19-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase AMED_6320 8c5bb12d297e13c48cabc668f631bfc9 167 PANTHER PTHR35561 4 166 1.3E-23 T 19-04-2016 AMED_0081 cef53d3b557ee90a124ccd57cad39082 216 PANTHER PTHR15020 1 216 7.7E-43 T 19-04-2016 AMED_0081 cef53d3b557ee90a124ccd57cad39082 216 PANTHER PTHR15020:SF11 1 216 7.7E-43 T 19-04-2016 AMED_0081 cef53d3b557ee90a124ccd57cad39082 216 SUPERFAMILY SSF51735 1 205 2.05E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0081 cef53d3b557ee90a124ccd57cad39082 216 Pfam PF13460 NAD(P)H-binding 7 193 4.4E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0081 cef53d3b557ee90a124ccd57cad39082 216 Gene3D G3DSA:3.40.50.720 1 206 8.0E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6962 0db377ff6a162de6797c934a734a7c2e 266 Gene3D G3DSA:3.40.710.10 7 265 9.5E-54 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6962 0db377ff6a162de6797c934a734a7c2e 266 Pfam PF13354 Beta-lactamase enzyme family 22 235 1.7E-51 T 19-04-2016 AMED_6962 0db377ff6a162de6797c934a734a7c2e 266 PANTHER PTHR35333 5 265 3.5E-58 T 19-04-2016 AMED_6962 0db377ff6a162de6797c934a734a7c2e 266 SUPERFAMILY SSF56601 10 262 7.09E-43 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4090 d8283b05574d109424470b3164fe2fa2 122 Gene3D G3DSA:3.30.70.900 2 120 2.6E-34 T 19-04-2016 AMED_4090 d8283b05574d109424470b3164fe2fa2 122 Pfam PF07045 Domain of unknown function (DUF1330) 35 108 6.1E-7 T 19-04-2016 IPR010753 Domain of unknown function DUF1330 AMED_4090 d8283b05574d109424470b3164fe2fa2 122 SUPERFAMILY SSF54909 34 109 1.7E-11 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8403 9c89fba6921bb438f8ad9c391716f6e6 229 PANTHER PTHR12215 4 186 3.2E-27 T 19-04-2016 AMED_8403 9c89fba6921bb438f8ad9c391716f6e6 229 SUPERFAMILY SSF56214 106 217 1.96E-22 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_8403 9c89fba6921bb438f8ad9c391716f6e6 229 SUPERFAMILY SSF56214 6 99 6.28E-14 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_8403 9c89fba6921bb438f8ad9c391716f6e6 229 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 107 211 2.3E-14 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_8403 9c89fba6921bb438f8ad9c391716f6e6 229 Gene3D G3DSA:3.90.470.20 4 116 5.1E-21 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_8403 9c89fba6921bb438f8ad9c391716f6e6 229 Gene3D G3DSA:3.90.470.20 117 214 2.4E-20 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 Pfam PF00753 Metallo-beta-lactamase superfamily 37 253 2.8E-23 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 SUPERFAMILY SSF56281 3 344 5.18E-55 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 Gene3D G3DSA:3.60.15.10 9 120 1.0E-42 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 Gene3D G3DSA:3.60.15.10 160 282 1.0E-42 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 SMART SM00849 38 253 7.2E-22 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 PANTHER PTHR23131:SF4 15 145 5.9E-39 T 19-04-2016 AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 PANTHER PTHR23131 15 145 5.9E-39 T 19-04-2016 AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 PANTHER PTHR23131 168 347 5.9E-39 T 19-04-2016 AMED_1665 321325f6787fa36e73c5d33744ad8e68 347 PANTHER PTHR23131:SF4 168 347 5.9E-39 T 19-04-2016 AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 Gene3D G3DSA:1.20.1250.20 8 192 6.8E-31 T 19-04-2016 AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 Pfam PF07690 Major Facilitator Superfamily 12 406 1.4E-51 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 Gene3D G3DSA:1.20.1250.20 259 456 5.8E-21 T 19-04-2016 AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 SUPERFAMILY SSF103473 3 189 3.66E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 SUPERFAMILY SSF103473 244 458 3.66E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 PANTHER PTHR23501 1 453 5.5E-137 T 19-04-2016 AMED_7543 dfa68e59aaf17743d65ed36dbb066d13 466 PANTHER PTHR23501:SF76 1 453 5.5E-137 T 19-04-2016 AMED_6201 9a0cf8ec4da1d9ac20e254db2c03e23a 259 PANTHER PTHR10366:SF367 3 158 9.2E-35 T 19-04-2016 AMED_6201 9a0cf8ec4da1d9ac20e254db2c03e23a 259 SUPERFAMILY SSF51735 3 194 1.08E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6201 9a0cf8ec4da1d9ac20e254db2c03e23a 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 118 146 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_6201 9a0cf8ec4da1d9ac20e254db2c03e23a 259 Gene3D G3DSA:3.40.50.720 3 166 1.6E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6201 9a0cf8ec4da1d9ac20e254db2c03e23a 259 PANTHER PTHR10366 3 158 9.2E-35 T 19-04-2016 AMED_6201 9a0cf8ec4da1d9ac20e254db2c03e23a 259 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 160 3.5E-18 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 PANTHER PTHR26402:SF292 8 230 1.2E-83 T 19-04-2016 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SUPERFAMILY SSF46894 127 229 1.13E-24 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 PANTHER PTHR26402 8 230 1.2E-83 T 19-04-2016 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Gene3D G3DSA:1.10.10.10 134 230 4.0E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SMART SM00448 8 118 4.4E-38 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SUPERFAMILY SSF52172 3 130 6.55E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Gene3D G3DSA:3.40.50.2300 5 127 3.4E-37 T 19-04-2016 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Pfam PF00072 Response regulator receiver domain 10 118 3.8E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 SMART SM00862 154 228 2.8E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6642 b43bafa5cde0dbb51bd275ebdf83ce0a 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 228 3.5E-19 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7460 42fd69e081cb549e2708881350f64f59 304 Pfam PF10503 Esterase PHB depolymerase 45 250 1.0E-20 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_7460 42fd69e081cb549e2708881350f64f59 304 SUPERFAMILY SSF53474 24 103 1.2E-6 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7460 42fd69e081cb549e2708881350f64f59 304 PANTHER PTHR11731:SF134 28 296 1.4E-78 T 19-04-2016 AMED_7460 42fd69e081cb549e2708881350f64f59 304 PANTHER PTHR11731 28 296 1.4E-78 T 19-04-2016 AMED_7460 42fd69e081cb549e2708881350f64f59 304 Gene3D G3DSA:3.40.50.1820 12 295 1.2E-32 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7460 42fd69e081cb549e2708881350f64f59 304 SUPERFAMILY SSF53474 127 292 1.22E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7460 42fd69e081cb549e2708881350f64f59 304 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 43 253 6.6E-44 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_1576 01bfc023fb9ff54afb6a5f3f02659c85 190 SUPERFAMILY SSF46689 5 69 8.72E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1576 01bfc023fb9ff54afb6a5f3f02659c85 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 3.5E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1576 01bfc023fb9ff54afb6a5f3f02659c85 190 PANTHER PTHR30055 7 180 1.4E-16 T 19-04-2016 AMED_1576 01bfc023fb9ff54afb6a5f3f02659c85 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1576 01bfc023fb9ff54afb6a5f3f02659c85 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1576 01bfc023fb9ff54afb6a5f3f02659c85 190 Gene3D G3DSA:1.10.357.10 4 157 7.7E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 Gene3D G3DSA:1.20.1250.20 12 191 1.4E-25 T 19-04-2016 AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 SUPERFAMILY SSF103473 243 447 4.32E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 SUPERFAMILY SSF103473 10 193 4.32E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 Pfam PF07690 Major Facilitator Superfamily 16 403 2.0E-54 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 Gene3D G3DSA:1.20.1250.20 258 447 7.7E-25 T 19-04-2016 AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 PANTHER PTHR23501 9 453 9.5E-113 T 19-04-2016 AMED_3717 404be67e92ab828e5a9de6cc49b98b36 453 PANTHER PTHR23501:SF7 9 453 9.5E-113 T 19-04-2016 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 SUPERFAMILY SSF49785 399 522 1.7E-23 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 Pfam PF03422 Carbohydrate binding module (family 6) 402 521 7.7E-13 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PANTHER PTHR11452:SF12 2 405 1.1E-193 T 19-04-2016 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 Gene3D G3DSA:3.20.20.70 30 299 2.0E-126 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 SUPERFAMILY SSF51011 307 393 5.9E-16 T 19-04-2016 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 Gene3D G3DSA:2.60.120.260 399 522 5.2E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 SMART SM00606 397 522 0.0083 T 19-04-2016 IPR006584 Cellulose binding, type IV GO:0030246 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 Pfam PF16499 Alpha galactosidase A 38 371 1.2E-95 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 Gene3D G3DSA:2.60.40.1180 300 395 4.0E-23 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 SUPERFAMILY SSF51445 30 306 2.0E-100 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 148 165 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 240 259 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 175 193 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 261 282 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 112 133 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 33 52 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PRINTS PR00740 Glycosyl hydrolase family 27 signature 71 86 1.2E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 PANTHER PTHR11452 2 405 1.1E-193 T 19-04-2016 AMED_6804 2dc9987a8d021586ce8cd6d0958277ab 522 ProSitePatterns PS00512 Alpha-galactosidase signature. 76 92 - T 19-04-2016 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5614 f3f07b28264f6905b98609583d771063 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 86 188 4.0E-12 T 19-04-2016 IPR023214 HAD-like domain AMED_5614 f3f07b28264f6905b98609583d771063 223 Gene3D G3DSA:3.40.50.1000 74 213 2.1E-33 T 19-04-2016 IPR023214 HAD-like domain AMED_5614 f3f07b28264f6905b98609583d771063 223 SUPERFAMILY SSF56784 3 216 9.55E-38 T 19-04-2016 IPR023214 HAD-like domain AMED_5614 f3f07b28264f6905b98609583d771063 223 PANTHER PTHR12725 2 219 7.7E-39 T 19-04-2016 AMED_5614 f3f07b28264f6905b98609583d771063 223 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 4 179 3.8E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_5614 f3f07b28264f6905b98609583d771063 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 132 148 4.424911E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_5614 f3f07b28264f6905b98609583d771063 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 177 190 4.424911E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_5614 f3f07b28264f6905b98609583d771063 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 101 114 4.424911E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_5614 f3f07b28264f6905b98609583d771063 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 170 4.424911E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_5614 f3f07b28264f6905b98609583d771063 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 85 186 2.4E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_5614 f3f07b28264f6905b98609583d771063 223 PANTHER PTHR12725:SF66 2 219 7.7E-39 T 19-04-2016 AMED_5614 f3f07b28264f6905b98609583d771063 223 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 2 193 2.2E-42 T 19-04-2016 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 26 377 2.0E-79 T 19-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 PANTHER PTHR18964:SF70 26 382 4.7E-72 T 19-04-2016 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 SUPERFAMILY SSF53756 26 380 3.99E-85 T 19-04-2016 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 Gene3D G3DSA:3.40.50.2000 26 219 3.8E-60 T 19-04-2016 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 PANTHER PTHR18964 26 382 4.7E-72 T 19-04-2016 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 Gene3D G3DSA:3.40.50.2000 220 377 3.0E-40 T 19-04-2016 AMED_7405 3b3eefcb9b91ed1f74877ef36e53cb76 391 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 49 377 1.0E-81 T 19-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 Gene3D G3DSA:3.30.390.30 322 452 4.8E-41 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 1 454 1.7E-157 T 19-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PANTHER PTHR22912:SF125 1 447 8.9E-185 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PIRSF PIRSF000350 1 450 2.4E-76 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 Gene3D G3DSA:3.50.50.60 1 127 3.2E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PANTHER PTHR22912 1 447 8.9E-185 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 335 443 1.3E-32 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 295 302 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 252 266 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 418 438 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 30 45 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 331 352 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 128 137 6.7E-47 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 315 5.4E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 31 41 - T 19-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 SUPERFAMILY SSF55424 331 453 2.58E-36 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 SUPERFAMILY SSF51905 1 324 4.19E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 Gene3D G3DSA:3.50.50.60 128 321 3.1E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 1.4E-22 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 280 302 1.4E-22 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 125 143 1.4E-22 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 267 1.4E-22 T 19-04-2016 AMED_6934 e66f40ced706128b8866a39ed1c9ed70 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.4E-22 T 19-04-2016 AMED_1571 afe44cc98c4bd0068ad96662081e4049 379 SUPERFAMILY SSF55073 164 314 4.4E-34 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_1571 afe44cc98c4bd0068ad96662081e4049 379 Gene3D G3DSA:3.30.70.1230 167 314 1.1E-22 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_1571 afe44cc98c4bd0068ad96662081e4049 379 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 167 312 2.4E-13 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_1571 afe44cc98c4bd0068ad96662081e4049 379 PANTHER PTHR11920:SF337 167 342 1.3E-17 T 19-04-2016 AMED_1571 afe44cc98c4bd0068ad96662081e4049 379 Pfam PF16701 Adenylate cyclase regulatory domain 16 108 4.6E-12 T 19-04-2016 IPR032026 Adenylate cyclase regulatory domain AMED_1571 afe44cc98c4bd0068ad96662081e4049 379 PANTHER PTHR11920 167 342 1.3E-17 T 19-04-2016 AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 SUPERFAMILY SSF56112 106 168 1.84E-30 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 SUPERFAMILY SSF56112 205 315 1.84E-30 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 PANTHER PTHR10566:SF64 14 440 1.3E-185 T 19-04-2016 AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 PANTHER PTHR10566 14 440 1.3E-185 T 19-04-2016 AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 Pfam PF03109 ABC1 family 122 237 7.8E-33 T 19-04-2016 IPR004147 UbiB domain AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 Gene3D G3DSA:3.90.1200.10 247 298 3.0E-4 T 19-04-2016 AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 Gene3D G3DSA:3.90.1200.10 299 312 3.7E-5 T 19-04-2016 AMED_1240 24c69fcdc758be867f56ae69bba6bb19 446 Gene3D G3DSA:3.90.1200.10 179 219 3.7E-5 T 19-04-2016 AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PANTHER PTHR33371:SF8 1 313 3.6E-114 T 19-04-2016 AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 246 265 9.7E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 297 316 9.7E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 28 48 9.7E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 128 152 9.7E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 177 195 9.7E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 90 106 9.7E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 Pfam PF02470 MlaD protein 39 112 2.3E-15 T 19-04-2016 IPR003399 Mce/MlaD AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 PANTHER PTHR33371 1 313 3.6E-114 T 19-04-2016 AMED_0606 e2a1528160c87bf67d3bfcdd904c6100 328 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 291 7.9E-62 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.980 1675 1836 5.6E-45 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.980 612 775 2.0E-44 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SMART SM00824 Thioesterase 3091 3330 0.0012 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF47336 2023 2094 1.24E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF52777 1074 1272 1.22E-43 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SMART SM00823 Phosphopantetheine attachment site 2029 2098 0.0023 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SMART SM00823 Phosphopantetheine attachment site 2997 3065 0.0016 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SMART SM00823 Phosphopantetheine attachment site 974 1042 0.0016 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF53474 3070 3330 3.44E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 PANTHER PTHR24095 637 2975 0.0 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 1934 2004 1.8E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 2911 2974 2.2E-9 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 873 949 1.1E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 PANTHER PTHR24095:SF137 637 2975 0.0 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.980 463 611 1.7E-24 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 606 617 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1668 1679 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.30.300.30 860 978 1.9E-36 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.30.300.30 1921 2033 5.4E-40 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.30.300.30 2900 3000 2.9E-17 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF47336 968 1038 1.83E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF52777 1258 1501 6.11E-54 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF13745 HxxPF-repeated domain 2427 2519 1.6E-23 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.980 1529 1674 3.0E-30 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF56801 1528 2042 2.22E-136 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF56801 459 987 2.75E-133 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00501 AMP-binding enzyme 2724 2896 6.8E-23 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00501 AMP-binding enzyme 2572 2636 3.0E-5 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00501 AMP-binding enzyme 1536 1926 9.8E-75 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00501 AMP-binding enzyme 467 865 8.6E-73 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF52777 2115 2285 9.67E-49 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3021 3036 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 998 1013 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.980 2569 2639 2.8E-8 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00550 Phosphopantetheine attachment site 977 1037 8.5E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00550 Phosphopantetheine attachment site 2999 3060 7.7E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00550 Phosphopantetheine attachment site 2031 2093 1.9E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.1820 3075 3192 8.5E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.1820 3262 3331 8.5E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF52777 10 176 7.67E-39 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:3.40.50.980 2725 2809 7.9E-7 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF52777 2294 2543 7.56E-55 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF52777 193 424 5.23E-34 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1553 1950 1.6E-113 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 484 889 1.1E-112 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00975 Thioesterase domain 3089 3325 2.1E-26 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF56801 2534 2987 9.42E-60 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00668 Condensation domain 7 299 3.6E-51 T 19-04-2016 IPR001242 Condensation domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00668 Condensation domain 1076 1371 8.1E-64 T 19-04-2016 IPR001242 Condensation domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Pfam PF00668 Condensation domain 2112 2404 9.4E-62 T 19-04-2016 IPR001242 Condensation domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:2.30.38.10 776 855 3.6E-23 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:2.30.38.10 2825 2895 4.3E-23 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:2.30.38.10 1837 1916 1.1E-21 T 19-04-2016 AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 SUPERFAMILY SSF47336 2991 3059 1.07E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:1.10.1200.10 3001 3061 6.0E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:1.10.1200.10 2034 2097 1.2E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4034 4f78d71a65f8a6a45e9831edaa6a246b 3338 Gene3D G3DSA:1.10.1200.10 979 1039 3.3E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8063 cf0e715b05bc2da187824896452f88ea 284 PANTHER PTHR35010 2 282 1.2E-90 T 19-04-2016 AMED_8063 cf0e715b05bc2da187824896452f88ea 284 PANTHER PTHR35010:SF2 2 282 1.2E-90 T 19-04-2016 AMED_8063 cf0e715b05bc2da187824896452f88ea 284 Gene3D G3DSA:1.10.260.40 3 83 3.2E-20 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8063 cf0e715b05bc2da187824896452f88ea 284 SMART SM00530 11 84 5.8E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8063 cf0e715b05bc2da187824896452f88ea 284 SUPERFAMILY SSF47413 32 82 8.3E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8063 cf0e715b05bc2da187824896452f88ea 284 Pfam PF13560 Helix-turn-helix domain 7 83 1.3E-16 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 PANTHER PTHR12526 721 772 1.9E-25 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 PANTHER PTHR12526 7 109 1.9E-25 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 PANTHER PTHR12526 135 301 1.9E-25 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 PANTHER PTHR12526 656 691 1.9E-25 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 SUPERFAMILY SSF53756 10 107 8.97E-28 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 SUPERFAMILY SSF53756 152 394 8.97E-28 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 SUPERFAMILY SSF53756 504 700 4.49E-28 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 SUPERFAMILY SSF53756 730 768 4.49E-28 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 Gene3D G3DSA:3.40.50.2000 557 757 5.1E-11 T 19-04-2016 AMED_0117 d1856520c701e1460abbc3e1c77eca6a 784 Pfam PF00534 Glycosyl transferases group 1 637 693 1.0E-8 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_2157 1f59bd67cef6cb183e6304e0525f0762 289 SUPERFAMILY SSF52151 9 205 1.36E-47 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_2157 1f59bd67cef6cb183e6304e0525f0762 289 Gene3D G3DSA:3.40.1090.10 14 184 3.3E-17 T 19-04-2016 AMED_2157 1f59bd67cef6cb183e6304e0525f0762 289 Pfam PF01734 Patatin-like phospholipase 13 182 3.3E-25 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMED_2157 1f59bd67cef6cb183e6304e0525f0762 289 PANTHER PTHR14226 10 193 1.0E-39 T 19-04-2016 AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PANTHER PTHR24322:SF418 13 140 1.8E-30 T 19-04-2016 AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PANTHER PTHR24322:SF418 156 192 1.8E-30 T 19-04-2016 AMED_5710 9f131224f404f14afbf17e070988dbc6 275 SUPERFAMILY SSF51735 7 227 1.43E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5710 9f131224f404f14afbf17e070988dbc6 275 Gene3D G3DSA:3.40.50.720 8 201 1.8E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PIRSF PIRSF000126 1 262 1.1E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.8E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.8E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 7.8E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.8E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.8E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 Pfam PF00106 short chain dehydrogenase 10 194 2.3E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PANTHER PTHR24322 13 140 1.8E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5710 9f131224f404f14afbf17e070988dbc6 275 PANTHER PTHR24322 156 192 1.8E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4841 836b281c0710e44337918272c7ec7133 147 PANTHER PTHR38009:SF1 1 147 3.3E-30 T 19-04-2016 AMED_4841 836b281c0710e44337918272c7ec7133 147 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 9 146 2.3E-34 T 19-04-2016 IPR011747 Conserved hypothetical protein CHP02241 AMED_4841 836b281c0710e44337918272c7ec7133 147 Pfam PF06841 T4-like virus tail tube protein gp19 12 145 6.9E-32 T 19-04-2016 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 AMED_4841 836b281c0710e44337918272c7ec7133 147 PANTHER PTHR38009 1 147 3.3E-30 T 19-04-2016 AMED_6091 cf7b494a340cb4a7fd9542db694dea64 153 Gene3D G3DSA:3.30.420.10 3 143 6.6E-59 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_6091 cf7b494a340cb4a7fd9542db694dea64 153 SUPERFAMILY SSF53098 3 141 2.4E-55 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_6091 cf7b494a340cb4a7fd9542db694dea64 153 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 33.007 T 19-04-2016 IPR022892 Ribonuclease H GO:0004523 AMED_6091 cf7b494a340cb4a7fd9542db694dea64 153 PANTHER PTHR10642 2 144 8.4E-58 T 19-04-2016 AMED_6091 cf7b494a340cb4a7fd9542db694dea64 153 Pfam PF00075 RNase H 3 140 2.8E-50 T 19-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 PANTHER PTHR30349 309 440 5.7E-37 T 19-04-2016 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 PANTHER PTHR30349 131 252 5.7E-37 T 19-04-2016 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 Pfam PF00589 Phage integrase family 314 429 1.6E-16 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 SUPERFAMILY SSF56349 312 436 9.71E-51 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 SUPERFAMILY SSF56349 78 246 9.71E-51 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 Gene3D G3DSA:1.10.150.130 78 187 2.9E-13 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_0351 3e91500b8f177d6f58815e68276c7058 448 PANTHER PTHR30349:SF20 309 440 5.7E-37 T 19-04-2016 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 PANTHER PTHR30349:SF20 131 252 5.7E-37 T 19-04-2016 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 Gene3D G3DSA:1.10.443.10 312 435 1.5E-35 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_0351 3e91500b8f177d6f58815e68276c7058 448 Gene3D G3DSA:1.10.443.10 193 245 1.5E-35 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_1013 ab5441b4f4f291c6196b52059e228b98 376 SUPERFAMILY SSF53756 8 370 2.56E-65 T 19-04-2016 AMED_1013 ab5441b4f4f291c6196b52059e228b98 376 Pfam PF00534 Glycosyl transferases group 1 193 348 2.1E-17 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_1013 ab5441b4f4f291c6196b52059e228b98 376 Pfam PF13439 Glycosyltransferase Family 4 13 173 8.8E-20 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_1013 ab5441b4f4f291c6196b52059e228b98 376 Gene3D G3DSA:3.40.50.2000 163 347 2.0E-18 T 19-04-2016 AMED_1013 ab5441b4f4f291c6196b52059e228b98 376 PANTHER PTHR12526 1 372 2.7E-49 T 19-04-2016 AMED_6034 8abde5fe4b75cdce97cbeac8adaf7032 184 SUPERFAMILY SSF55961 9 152 2.07E-10 T 19-04-2016 AMED_6034 8abde5fe4b75cdce97cbeac8adaf7032 184 Gene3D G3DSA:3.30.530.20 11 150 2.8E-4 T 19-04-2016 IPR023393 START-like domain AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 PANTHER PTHR10578:SF79 10 386 6.0E-198 T 19-04-2016 AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 PANTHER PTHR10578 10 386 6.0E-198 T 19-04-2016 AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 Gene3D G3DSA:3.20.20.70 27 385 4.8E-135 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 PIRSF PIRSF000138 23 387 2.2E-122 T 19-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 Pfam PF01070 FMN-dependent dehydrogenase 35 385 4.2E-125 T 19-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 SUPERFAMILY SSF51395 29 382 8.55E-90 T 19-04-2016 AMED_6987 373a879d9bc5866a3e3aaf899db7faca 387 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 282 288 - T 19-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 2.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 2.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 2.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PANTHER PTHR24322 142 174 5.2E-58 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PANTHER PTHR24322 10 126 5.2E-58 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 SUPERFAMILY SSF51735 2 209 3.4E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1314 540a861a38835cddb361b2aec1adf196 234 Gene3D G3DSA:3.40.50.720 4 204 1.7E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1314 540a861a38835cddb361b2aec1adf196 234 PANTHER PTHR24322:SF546 142 174 5.2E-58 T 19-04-2016 AMED_1314 540a861a38835cddb361b2aec1adf196 234 PANTHER PTHR24322:SF546 10 126 5.2E-58 T 19-04-2016 AMED_1314 540a861a38835cddb361b2aec1adf196 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 2.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 2.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 2.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.0E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1314 540a861a38835cddb361b2aec1adf196 234 Pfam PF00106 short chain dehydrogenase 7 183 9.0E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4285 440f86844df6a0db94822185e59c725f 357 PANTHER PTHR10366 280 342 1.0E-36 T 19-04-2016 AMED_4285 440f86844df6a0db94822185e59c725f 357 PANTHER PTHR10366 2 263 1.0E-36 T 19-04-2016 AMED_4285 440f86844df6a0db94822185e59c725f 357 Gene3D G3DSA:3.40.50.720 2 317 5.0E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4285 440f86844df6a0db94822185e59c725f 357 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 228 1.5E-21 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4285 440f86844df6a0db94822185e59c725f 357 SUPERFAMILY SSF51735 2 321 6.33E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4285 440f86844df6a0db94822185e59c725f 357 PANTHER PTHR10366:SF340 280 342 1.0E-36 T 19-04-2016 AMED_4285 440f86844df6a0db94822185e59c725f 357 PANTHER PTHR10366:SF340 2 263 1.0E-36 T 19-04-2016 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 Pfam PF00175 Oxidoreductase NAD-binding domain 335 437 1.8E-6 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 PANTHER PTHR19370 221 459 3.5E-17 T 19-04-2016 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 PANTHER PTHR19370 7 12 3.5E-17 T 19-04-2016 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 Gene3D G3DSA:3.40.50.80 329 458 7.4E-25 T 19-04-2016 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 Pfam PF01794 Ferric reductase like transmembrane component 59 177 2.5E-13 T 19-04-2016 IPR013130 Ferric reductase transmembrane component-like domain AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 SUPERFAMILY SSF52343 330 458 9.95E-27 T 19-04-2016 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 SUPERFAMILY SSF63380 225 321 1.06E-12 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_3689 1beb5b338ed3d6cab8daa0a49e71d3d9 460 Gene3D G3DSA:2.40.30.10 228 322 3.6E-8 T 19-04-2016 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 Gene3D G3DSA:1.10.1740.10 14 92 6.5E-27 T 19-04-2016 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 186 1.7E-27 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 Gene3D G3DSA:1.10.10.10 128 189 2.2E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 SUPERFAMILY SSF88946 18 105 6.08E-24 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 PANTHER PTHR30173:SF9 19 194 7.9E-45 T 19-04-2016 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 Pfam PF08281 Sigma-70, region 4 133 183 5.6E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 SUPERFAMILY SSF88659 131 187 1.03E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 TIGRFAM TIGR02947 SigH_actino: RNA polymerase sigma-70 factor, TIGR02947 family 11 198 8.9E-109 T 19-04-2016 IPR014293 RNA polymerase sigma-70, actinobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 Pfam PF04542 Sigma-70 region 2 28 91 2.7E-18 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7975 90e0cf4d5776a5a8c19427681cc0d190 207 PANTHER PTHR30173 19 194 7.9E-45 T 19-04-2016 AMED_3124 d1521c42ead231439149ac42aa0170a7 206 SUPERFAMILY SSF52266 6 198 2.33E-29 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3124 d1521c42ead231439149ac42aa0170a7 206 Gene3D G3DSA:3.40.50.1110 9 199 8.0E-25 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3124 d1521c42ead231439149ac42aa0170a7 206 PANTHER PTHR30383 5 203 1.7E-18 T 19-04-2016 AMED_3124 d1521c42ead231439149ac42aa0170a7 206 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 13 186 2.7E-23 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 SMART SM00448 9 122 2.3E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 SMART SM00421 151 208 3.8E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 Gene3D G3DSA:1.10.10.10 156 214 8.4E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 PANTHER PTHR26402:SF458 9 218 2.7E-58 T 19-04-2016 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 Gene3D G3DSA:3.40.50.2300 7 155 3.2E-32 T 19-04-2016 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 SUPERFAMILY SSF46894 137 214 6.8E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 Pfam PF00072 Response regulator receiver domain 11 123 1.6E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 207 2.8E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 PANTHER PTHR26402 9 218 2.7E-58 T 19-04-2016 AMED_3153 a3c3d396f41aed3f6101725ae9deefca 219 SUPERFAMILY SSF52172 8 127 1.1E-27 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3115 7f7d64533eb24df2ba0099fe9bffa63f 268 PANTHER PTHR15032 9 264 1.7E-35 T 19-04-2016 AMED_3115 7f7d64533eb24df2ba0099fe9bffa63f 268 PANTHER PTHR15032:SF4 9 264 1.7E-35 T 19-04-2016 AMED_3115 7f7d64533eb24df2ba0099fe9bffa63f 268 SUPERFAMILY SSF56281 12 256 7.84E-21 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3115 7f7d64533eb24df2ba0099fe9bffa63f 268 Gene3D G3DSA:3.60.15.10 6 265 5.9E-37 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3115 7f7d64533eb24df2ba0099fe9bffa63f 268 Pfam PF12706 Beta-lactamase superfamily domain 43 231 5.3E-17 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8774 20ee75966d872e667052a00cb73883e2 298 SUPERFAMILY SSF56112 12 272 8.69E-38 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8774 20ee75966d872e667052a00cb73883e2 298 Pfam PF01636 Phosphotransferase enzyme family 45 243 1.5E-18 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_8774 20ee75966d872e667052a00cb73883e2 298 Gene3D G3DSA:3.90.1200.10 105 268 5.7E-19 T 19-04-2016 AMED_5436 e4c2fb3253df2fddfe9a377dc1c8d22f 139 Gene3D G3DSA:2.60.120.10 8 111 1.3E-22 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5436 e4c2fb3253df2fddfe9a377dc1c8d22f 139 PIRSF PIRSF016602 1 137 2.0E-49 T 19-04-2016 IPR016672 Polyketide biosynthesis protein CurC, predicted AMED_5436 e4c2fb3253df2fddfe9a377dc1c8d22f 139 Pfam PF07883 Cupin domain 40 106 2.6E-18 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_5436 e4c2fb3253df2fddfe9a377dc1c8d22f 139 SUPERFAMILY SSF51182 18 130 1.06E-26 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 SUPERFAMILY SSF82679 99 202 3.27E-36 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 Pfam PF02357 Transcription termination factor nusG 99 201 2.4E-25 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 Gene3D G3DSA:3.30.70.940 99 203 4.9E-43 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 97 288 23.789 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 SUPERFAMILY SSF50104 232 288 4.71E-17 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 ProSitePatterns PS01014 Transcription termination factor nusG signature. 271 280 - T 19-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 SMART SM00738 97 205 2.2E-51 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 Gene3D G3DSA:2.30.30.30 229 288 1.2E-27 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 PANTHER PTHR30265 17 288 5.7E-71 T 19-04-2016 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 PRINTS PR00338 Transcription termination factor NUSG signature 246 261 1.5E-19 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 PRINTS PR00338 Transcription termination factor NUSG signature 264 280 1.5E-19 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 PRINTS PR00338 Transcription termination factor NUSG signature 152 164 1.5E-19 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMED_0594 9b53d1f82d8082fe210498961541a4c6 288 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 100 288 1.2E-62 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 PANTHER PTHR11347:SF114 9 333 1.9E-30 T 19-04-2016 IPR027035 Hypoxia/Redox sensor histidine kinase response regulator DosT/DevS GO:0004673|GO:0046777|GO:0070483 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 PANTHER PTHR11347:SF114 375 483 1.9E-30 T 19-04-2016 IPR027035 Hypoxia/Redox sensor histidine kinase response regulator DosT/DevS GO:0004673|GO:0046777|GO:0070483 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 SUPERFAMILY SSF55781 9 184 9.38E-29 T 19-04-2016 IPR029016 GAF domain-like AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Gene3D G3DSA:3.30.565.10 424 529 1.5E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Pfam PF07730 Histidine kinase 340 400 1.7E-9 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 PANTHER PTHR11347 9 333 1.9E-30 T 19-04-2016 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 PANTHER PTHR11347 375 483 1.9E-30 T 19-04-2016 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Pfam PF13185 GAF domain 26 158 5.3E-16 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 SMART SM00387 442 530 0.0022 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 SUPERFAMILY SSF55781 169 350 5.23E-21 T 19-04-2016 IPR029016 GAF domain-like AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 SUPERFAMILY SSF55874 438 528 1.83E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 447 494 1.9E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 SMART SM00065 27 167 5.9E-17 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 SMART SM00065 188 332 4.4E-6 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Pfam PF01590 GAF domain 188 322 1.3E-4 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Gene3D G3DSA:3.30.450.40 166 333 4.0E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_5571 0fa6a257ae78d2b417733707efa2868e 530 Gene3D G3DSA:3.30.450.40 21 165 1.8E-24 T 19-04-2016 IPR029016 GAF domain-like AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 228 1.9E-19 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 Gene3D G3DSA:3.40.50.720 1 308 2.9E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 PANTHER PTHR10366 271 333 3.6E-63 T 19-04-2016 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 PANTHER PTHR10366 181 254 3.6E-63 T 19-04-2016 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 PANTHER PTHR10366 2 164 3.6E-63 T 19-04-2016 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 PANTHER PTHR10366:SF340 271 333 3.6E-63 T 19-04-2016 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 PANTHER PTHR10366:SF340 181 254 3.6E-63 T 19-04-2016 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 PANTHER PTHR10366:SF340 2 164 3.6E-63 T 19-04-2016 AMED_7472 14e6c35d26c29da3f1c79ca66cc8ca5e 340 SUPERFAMILY SSF51735 1 313 1.35E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 PANTHER PTHR24095:SF160 1 623 0.0 T 19-04-2016 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Gene3D G3DSA:3.40.50.980 241 402 2.9E-28 T 19-04-2016 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Gene3D G3DSA:3.40.50.980 54 240 2.5E-40 T 19-04-2016 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 58 3.6E-20 T 19-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Pfam PF00501 AMP-binding enzyme 68 500 1.6E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 SUPERFAMILY SSF56801 4 622 8.9E-160 T 19-04-2016 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Gene3D G3DSA:3.30.300.30 496 622 1.6E-24 T 19-04-2016 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 588 9.0E-26 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 Gene3D G3DSA:2.30.38.10 416 494 4.3E-13 T 19-04-2016 AMED_8264 64c49c9f1e007dfad56352a00ff1da4e 623 PANTHER PTHR24095 1 623 0.0 T 19-04-2016 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 Pfam PF00072 Response regulator receiver domain 8 117 9.0E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 PANTHER PTHR26402 6 228 3.2E-88 T 19-04-2016 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 SUPERFAMILY SSF52172 6 184 1.15E-43 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 5.8E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 Gene3D G3DSA:3.40.50.2300 4 128 8.3E-42 T 19-04-2016 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 Gene3D G3DSA:1.10.10.10 129 228 9.9E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 SMART SM00448 6 117 8.7E-44 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 PANTHER PTHR26402:SF556 6 228 3.2E-88 T 19-04-2016 AMED_3691 e1453c515f7ae790d198180d9d5680cc 230 SMART SM00862 152 227 5.5E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0164 693cc759bddbc1e42535e4180e4ffc60 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 2 212 8.6E-70 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_0164 693cc759bddbc1e42535e4180e4ffc60 335 PIRSF PIRSF000267 1 334 2.8E-111 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_0164 693cc759bddbc1e42535e4180e4ffc60 335 PANTHER PTHR30365 1 329 2.0E-109 T 19-04-2016 AMED_0164 693cc759bddbc1e42535e4180e4ffc60 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 3 320 3.7E-104 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_0164 693cc759bddbc1e42535e4180e4ffc60 335 PANTHER PTHR30365:SF6 1 329 2.0E-109 T 19-04-2016 AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 PANTHER PTHR11732 1 302 3.8E-129 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 SUPERFAMILY SSF51430 2 302 2.62E-90 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 PRINTS PR00069 Aldo-keto reductase signature 100 118 7.2E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 PRINTS PR00069 Aldo-keto reductase signature 131 148 7.2E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 PANTHER PTHR11732:SF132 1 302 3.8E-129 T 19-04-2016 AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 Pfam PF00248 Aldo/keto reductase family 16 301 3.2E-68 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_9112 b27601e531367edf1dd2c8a4726ab3bb 302 Gene3D G3DSA:3.20.20.100 8 302 4.0E-91 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 SUPERFAMILY SSF63562 14 85 9.24E-23 T 19-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 14 84 2.4E-26 T 19-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 Gene3D G3DSA:3.90.940.10 14 87 2.2E-32 T 19-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 PANTHER PTHR34476 15 89 7.0E-23 T 19-04-2016 AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 Pfam PF01192 RNA polymerase Rpb6 21 83 1.4E-14 T 19-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 14 86 14.179 T 19-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_2756 d5d194900fc7b299926f5b8659e529fd 89 SMART SM01409 21 85 1.7E-13 T 19-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_6680 b6470e7857a39e620d1d639aa290f718 189 SUPERFAMILY SSF52980 14 160 8.58E-30 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_6680 b6470e7857a39e620d1d639aa290f718 189 PANTHER PTHR34107 1 154 2.5E-18 T 19-04-2016 AMED_6680 b6470e7857a39e620d1d639aa290f718 189 Pfam PF05685 Putative restriction endonuclease 27 176 4.0E-32 T 19-04-2016 IPR008538 Domain of unknown function DUF820 AMED_6680 b6470e7857a39e620d1d639aa290f718 189 Gene3D G3DSA:3.90.1570.10 13 174 5.1E-30 T 19-04-2016 IPR012296 Nuclease, putative, TT1808 AMED_7912 e16749908ece00f00f3b76b0065c8191 156 PRINTS PR00502 NUDIX hydrolase family signature 58 73 4.9E-7 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7912 e16749908ece00f00f3b76b0065c8191 156 PRINTS PR00502 NUDIX hydrolase family signature 44 58 4.9E-7 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7912 e16749908ece00f00f3b76b0065c8191 156 ProSitePatterns PS00893 Nudix box signature. 49 70 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_7912 e16749908ece00f00f3b76b0065c8191 156 Gene3D G3DSA:3.90.79.10 6 148 3.9E-36 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7912 e16749908ece00f00f3b76b0065c8191 156 PANTHER PTHR22769 17 149 8.7E-32 T 19-04-2016 AMED_7912 e16749908ece00f00f3b76b0065c8191 156 SUPERFAMILY SSF55811 6 149 3.52E-34 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7912 e16749908ece00f00f3b76b0065c8191 156 Pfam PF00293 NUDIX domain 20 133 1.9E-21 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_7834 af50ee5fec9950f182eb6bd52eb53454 110 SMART SM00422 25 93 2.9E-9 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_7834 af50ee5fec9950f182eb6bd52eb53454 110 SUPERFAMILY SSF46955 25 100 7.33E-13 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_7834 af50ee5fec9950f182eb6bd52eb53454 110 PANTHER PTHR30204 17 107 5.4E-27 T 19-04-2016 AMED_7834 af50ee5fec9950f182eb6bd52eb53454 110 Gene3D G3DSA:1.10.1660.10 25 99 1.4E-14 T 19-04-2016 AMED_7834 af50ee5fec9950f182eb6bd52eb53454 110 Pfam PF13411 MerR HTH family regulatory protein 25 89 2.9E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_7834 af50ee5fec9950f182eb6bd52eb53454 110 PANTHER PTHR30204:SF29 17 107 5.4E-27 T 19-04-2016 AMED_8655 730e2f45482166adba669def4e79a21f 541 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 224 234 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_8655 730e2f45482166adba669def4e79a21f 541 Gene3D G3DSA:3.40.50.200 276 510 6.3E-34 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8655 730e2f45482166adba669def4e79a21f 541 Gene3D G3DSA:3.40.50.200 219 239 6.3E-34 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8655 730e2f45482166adba669def4e79a21f 541 PANTHER PTHR10795 223 240 3.9E-15 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8655 730e2f45482166adba669def4e79a21f 541 PANTHER PTHR10795 288 473 3.9E-15 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8655 730e2f45482166adba669def4e79a21f 541 PANTHER PTHR10795 498 509 3.9E-15 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8655 730e2f45482166adba669def4e79a21f 541 SUPERFAMILY SSF52743 219 241 1.96E-34 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8655 730e2f45482166adba669def4e79a21f 541 SUPERFAMILY SSF52743 294 510 1.96E-34 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8655 730e2f45482166adba669def4e79a21f 541 PANTHER PTHR10795:SF419 223 240 3.9E-15 T 19-04-2016 AMED_8655 730e2f45482166adba669def4e79a21f 541 PANTHER PTHR10795:SF419 288 473 3.9E-15 T 19-04-2016 AMED_8655 730e2f45482166adba669def4e79a21f 541 PANTHER PTHR10795:SF419 498 509 3.9E-15 T 19-04-2016 AMED_8655 730e2f45482166adba669def4e79a21f 541 Pfam PF00082 Subtilase family 221 514 6.8E-16 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8655 730e2f45482166adba669def4e79a21f 541 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 500 510 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 427 436 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PANTHER PTHR24286 63 486 2.7E-100 T 19-04-2016 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00385 P450 superfamily signature 298 315 2.8E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00385 P450 superfamily signature 434 445 2.8E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00385 P450 superfamily signature 425 434 2.8E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00385 P450 superfamily signature 349 360 2.8E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 418 434 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 63 80 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 434 452 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 393 411 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 289 315 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 377 391 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PRINTS PR00465 E-class P450 group IV signature 344 360 5.0E-22 T 19-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 SUPERFAMILY SSF48264 56 486 1.83E-94 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 PANTHER PTHR24286:SF24 63 486 2.7E-100 T 19-04-2016 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 Gene3D G3DSA:1.10.630.10 59 486 6.4E-94 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2875 6982db686adc97774d1f0e2a78f68eff 486 Pfam PF00067 Cytochrome P450 64 461 9.9E-64 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 Gene3D G3DSA:3.40.50.300 3 227 5.8E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 PANTHER PTHR24220 7 220 1.3E-86 T 19-04-2016 AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 Pfam PF00005 ABC transporter 21 161 2.0E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 PANTHER PTHR24220:SF450 7 220 1.3E-86 T 19-04-2016 AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 Pfam PF13732 Domain of unknown function (DUF4162) 215 297 5.7E-7 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 SUPERFAMILY SSF52540 5 222 6.99E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8422 73b6906b469fdc115cdd5993ad3b36cc 308 SMART SM00382 30 209 2.7E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5545 a73e849ee8ed8da313fbaee08269eb4d 463 PANTHER PTHR10617:SF114 8 459 9.6E-94 T 19-04-2016 AMED_5545 a73e849ee8ed8da313fbaee08269eb4d 463 PANTHER PTHR10617 8 459 9.6E-94 T 19-04-2016 AMED_5545 a73e849ee8ed8da313fbaee08269eb4d 463 Gene3D G3DSA:3.50.50.60 10 197 1.3E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5545 a73e849ee8ed8da313fbaee08269eb4d 463 Gene3D G3DSA:3.50.50.60 308 346 1.3E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5545 a73e849ee8ed8da313fbaee08269eb4d 463 SUPERFAMILY SSF51905 306 353 7.62E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5545 a73e849ee8ed8da313fbaee08269eb4d 463 SUPERFAMILY SSF51905 7 190 7.62E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 Gene3D G3DSA:3.30.950.10 111 232 9.7E-32 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 PANTHER PTHR21091:SF17 1 208 3.2E-53 T 19-04-2016 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 Gene3D G3DSA:3.40.1010.10 2 110 3.8E-33 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 242 3.7E-81 T 19-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 19-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 1.4E-40 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 19-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 SUPERFAMILY SSF53790 2 231 1.11E-59 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7056 cdd98264b8db06e1fd8df241b23138d3 253 PANTHER PTHR21091 1 208 3.2E-53 T 19-04-2016 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 Gene3D G3DSA:3.20.20.80 36 389 4.7E-109 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 SUPERFAMILY SSF49384 402 503 3.56E-24 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 PANTHER PTHR35923:SF2 46 387 3.9E-64 T 19-04-2016 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 Gene3D G3DSA:2.60.40.290 407 508 6.3E-26 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 SMART SM00637 408 507 2.6E-30 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 PANTHER PTHR35923 46 387 3.9E-64 T 19-04-2016 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 188 197 - T 19-04-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 48 363 4.7E-59 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_5192 ab971da332160e978d83c48e42fed8c1 509 SUPERFAMILY SSF51445 36 388 1.72E-85 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5192 ab971da332160e978d83c48e42fed8c1 509 Pfam PF00553 Cellulose binding domain 408 507 5.6E-23 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_1795 d84fdba21f970c6d156ddbae527d478f 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 58 5.8E-20 T 19-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 AMED_1795 d84fdba21f970c6d156ddbae527d478f 60 Pfam PF01783 Ribosomal L32p protein family 2 58 1.6E-22 T 19-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 AMED_1795 d84fdba21f970c6d156ddbae527d478f 60 SUPERFAMILY SSF57829 2 58 8.55E-17 T 19-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMED_1795 d84fdba21f970c6d156ddbae527d478f 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 2 57 16.575 T 19-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 SUPERFAMILY SSF52283 196 243 1.19E-109 T 19-04-2016 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 SUPERFAMILY SSF52283 407 486 1.19E-109 T 19-04-2016 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 SUPERFAMILY SSF52283 11 158 1.19E-109 T 19-04-2016 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 19-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 SMART SM00997 244 406 1.7E-101 T 19-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 485 1.9E-141 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 244 406 2.3E-76 T 19-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 SMART SM00996 12 485 0.0 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 478 47.434 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 478 5.4E-182 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 SUPERFAMILY SSF51735 244 406 5.1E-73 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 Gene3D G3DSA:3.40.50.720 246 405 1.5E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 PANTHER PTHR23420 8 156 0.0 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 PANTHER PTHR23420 194 486 0.0 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 PIRSF PIRSF001109 1 486 1.1E-184 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 Gene3D G3DSA:3.40.50.1480 407 486 2.5E-141 T 19-04-2016 AMED_5263 c9040dbc6204373022bc6313ee4509bb 486 Gene3D G3DSA:3.40.50.1480 12 245 2.5E-141 T 19-04-2016 AMED_8127 fc16815bf8c721f341f9ee32f2da2129 135 Gene3D G3DSA:3.30.1460.10 53 129 5.6E-4 T 19-04-2016 AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 PANTHER PTHR41251 1 285 4.7E-65 T 19-04-2016 AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 SMART SM00559 49 176 1.2E-21 T 19-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 TIGRFAM TIGR02772 Ku_bact: Ku protein 1 250 2.0E-67 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 Pfam PF02735 Ku70/Ku80 beta-barrel domain 10 173 1.3E-31 T 19-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 1 248 28.0 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 PANTHER PTHR41251:SF1 1 285 4.7E-65 T 19-04-2016 AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 SUPERFAMILY SSF100939 1 253 1.61E-43 T 19-04-2016 IPR016194 SPOC-like, C-terminal domain AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 Gene3D G3DSA:2.40.290.10 3 141 3.3E-7 T 19-04-2016 IPR016194 SPOC-like, C-terminal domain AMED_1951 91f187d31d6fa691fd00a20b5f03987b 290 PIRSF PIRSF006493 1 285 2.0E-75 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 SUPERFAMILY SSF82171 19 331 5.49E-24 T 19-04-2016 AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Gene3D G3DSA:2.120.10.30 166 266 1.7E-32 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Gene3D G3DSA:2.120.10.30 34 125 1.7E-32 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 PANTHER PTHR11731 57 648 3.8E-97 T 19-04-2016 AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF07676 WD40-like Beta Propeller Repeat 108 133 0.0025 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF07676 WD40-like Beta Propeller Repeat 53 88 5.2E-5 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF07676 WD40-like Beta Propeller Repeat 189 210 0.079 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 PANTHER PTHR11731:SF90 57 648 3.8E-97 T 19-04-2016 AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Pfam PF00326 Prolyl oligopeptidase family 443 648 4.8E-45 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 Gene3D G3DSA:3.40.50.1820 401 648 1.6E-66 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6107 c9f180b0b77199e74ed2a46b1735d388 648 SUPERFAMILY SSF53474 402 648 1.69E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1052 b860af57e61a51e9681ac34b4555431a 503 PANTHER PTHR24221:SF161 27 498 4.2E-104 T 19-04-2016 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 Pfam PF00664 ABC transporter transmembrane region 59 241 9.3E-11 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 6 492 1.1E-150 T 19-04-2016 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 Pfam PF00005 ABC transporter 306 450 3.8E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 SUPERFAMILY SSF52540 289 498 3.2E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1052 b860af57e61a51e9681ac34b4555431a 503 SMART SM00382 315 496 1.5E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1052 b860af57e61a51e9681ac34b4555431a 503 SUPERFAMILY SSF90123 23 267 1.15E-28 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 Gene3D G3DSA:1.20.1560.10 30 267 7.3E-23 T 19-04-2016 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 ProSitePatterns PS00211 ABC transporters family signature. 421 435 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 PANTHER PTHR24221 27 498 4.2E-104 T 19-04-2016 AMED_1052 b860af57e61a51e9681ac34b4555431a 503 Gene3D G3DSA:3.40.50.300 293 498 3.7E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 SUPERFAMILY SSF54675 22 127 6.83E-27 T 19-04-2016 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 295 5.0E-89 T 19-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 PIRSF PIRSF006250 19 297 9.8E-93 T 19-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 PANTHER PTHR32179 1 297 2.3E-111 T 19-04-2016 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 39 126 1.1E-19 T 19-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 Gene3D G3DSA:3.90.1170.20 19 148 6.6E-40 T 19-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 128 295 7.0E-56 T 19-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 SUPERFAMILY SSF51690 128 296 1.02E-56 T 19-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 AMED_2225 02d28b20ff8411081bc5b59a38fe4bb9 297 Gene3D G3DSA:3.20.20.70 149 286 3.5E-55 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 Gene3D G3DSA:3.20.20.30 116 247 1.2E-13 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 Gene3D G3DSA:3.20.20.30 4 109 7.2E-30 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 PANTHER PTHR30011:SF5 5 139 8.0E-26 T 19-04-2016 AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 SUPERFAMILY SSF51679 4 250 7.21E-44 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 2 260 3.4E-82 T 19-04-2016 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 Pfam PF00296 Luciferase-like monooxygenase 5 250 4.9E-31 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9252 5941937a761e5bd7ad7cce07ab2f21e7 261 PANTHER PTHR30011 5 139 8.0E-26 T 19-04-2016 AMED_7187 680c09988f200964421d5774ad7e429c 172 Pfam PF01613 Flavin reductase like domain 14 156 3.9E-36 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_7187 680c09988f200964421d5774ad7e429c 172 SMART SM00903 13 157 4.2E-50 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_7187 680c09988f200964421d5774ad7e429c 172 SUPERFAMILY SSF50475 5 156 7.36E-44 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7187 680c09988f200964421d5774ad7e429c 172 PANTHER PTHR30466 1 157 3.1E-32 T 19-04-2016 AMED_7187 680c09988f200964421d5774ad7e429c 172 Gene3D G3DSA:2.30.110.10 3 156 1.9E-51 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 Pfam PF03466 LysR substrate binding domain 59 243 3.7E-20 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 Gene3D G3DSA:3.40.190.10 147 214 3.2E-13 T 19-04-2016 AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 Gene3D G3DSA:1.10.10.10 1 47 4.1E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 Gene3D G3DSA:3.40.190.10 81 146 4.1E-6 T 19-04-2016 AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 SUPERFAMILY SSF46785 1 47 3.45E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 SUPERFAMILY SSF53850 58 249 8.32E-23 T 19-04-2016 AMED_1618 b6fbbcb53859c84acbf14836912b8b1f 250 PANTHER PTHR30126 1 228 5.2E-23 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:3.40.50.300 308 509 8.4E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 694 702 - T 19-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 SUPERFAMILY SSF54211 610 788 1.1E-52 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 SMART SM00382 357 510 6.9E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Hamap MF_01973 Lon protease [lon]. 7 790 58.39 T 19-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 TIGRFAM TIGR00763 lon: endopeptidase La 8 789 8.5E-248 T 19-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PANTHER PTHR10046:SF24 7 794 0.0 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 SUPERFAMILY SSF52540 308 565 7.98E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 744 762 3.4E-51 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 610 626 3.4E-51 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 365 384 3.4E-51 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 691 710 3.4E-51 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 721 740 3.4E-51 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PANTHER PTHR10046 7 794 0.0 T 19-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 SMART SM00464 6 203 5.9E-20 T 19-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 SUPERFAMILY SSF88697 7 200 1.49E-18 T 19-04-2016 IPR015947 PUA-like domain AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 PIRSF PIRSF001174 1 792 4.2E-254 T 19-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:3.30.230.10 605 789 1.9E-69 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Gene3D G3DSA:1.10.8.60 510 593 1.2E-26 T 19-04-2016 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 580 790 1.3E-78 T 19-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 7 200 1.8E-21 T 19-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 AMED_0582 2db1fb58157584f4d61385b5a9fe1310 800 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 362 497 7.0E-20 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_2966 42c2aa905d65e132426a1f360b592e27 230 Pfam PF12840 Helix-turn-helix domain 7 67 8.4E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2966 42c2aa905d65e132426a1f360b592e27 230 SUPERFAMILY SSF46785 2 90 1.52E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2966 42c2aa905d65e132426a1f360b592e27 230 PANTHER PTHR39168:SF1 1 224 4.1E-43 T 19-04-2016 AMED_2966 42c2aa905d65e132426a1f360b592e27 230 SMART SM00418 8 87 1.5E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2966 42c2aa905d65e132426a1f360b592e27 230 PANTHER PTHR39168 1 224 4.1E-43 T 19-04-2016 AMED_2966 42c2aa905d65e132426a1f360b592e27 230 Gene3D G3DSA:1.10.10.10 2 91 3.7E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 Pfam PF03060 Nitronate monooxygenase 79 333 1.1E-66 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 Pfam PF03060 Nitronate monooxygenase 2 78 1.2E-24 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 SUPERFAMILY SSF51412 2 258 5.95E-58 T 19-04-2016 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 PANTHER PTHR32332:SF20 268 344 6.8E-103 T 19-04-2016 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 PANTHER PTHR32332:SF20 1 233 6.8E-103 T 19-04-2016 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 Gene3D G3DSA:3.20.20.70 2 331 1.0E-66 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 PANTHER PTHR32332 268 344 6.8E-103 T 19-04-2016 AMED_3380 9b01e44da4c682a33806a2ba1ae7dc9c 351 PANTHER PTHR32332 1 233 6.8E-103 T 19-04-2016 AMED_0516 248b08859162920fa08d7c4bd01e496f 257 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 78 6.9E-6 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0516 248b08859162920fa08d7c4bd01e496f 257 Gene3D G3DSA:1.25.40.10 142 212 9.6E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0516 248b08859162920fa08d7c4bd01e496f 257 SUPERFAMILY SSF46894 2 88 4.54E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0516 248b08859162920fa08d7c4bd01e496f 257 PANTHER PTHR35807 1 248 1.2E-38 T 19-04-2016 AMED_0516 248b08859162920fa08d7c4bd01e496f 257 SUPERFAMILY SSF48452 91 249 2.73E-30 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0516 248b08859162920fa08d7c4bd01e496f 257 Gene3D G3DSA:1.10.10.10 14 89 2.1E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0516 248b08859162920fa08d7c4bd01e496f 257 SMART SM01043 95 236 3.9E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0516 248b08859162920fa08d7c4bd01e496f 257 Pfam PF03704 Bacterial transcriptional activator domain 95 236 9.3E-38 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0516 248b08859162920fa08d7c4bd01e496f 257 SMART SM00862 15 88 3.0E-4 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8916 4092b3aaac631b356891ed9c34c293b2 293 PANTHER PTHR32552 1 290 2.0E-61 T 19-04-2016 AMED_8916 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF00665 Integrase core domain 129 243 2.2E-26 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_8916 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF13276 HTH-like domain 47 104 4.6E-23 T 19-04-2016 IPR025948 HTH-like domain AMED_8916 4092b3aaac631b356891ed9c34c293b2 293 SUPERFAMILY SSF53098 124 283 2.12E-36 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_8916 4092b3aaac631b356891ed9c34c293b2 293 Gene3D G3DSA:3.30.420.10 124 281 4.9E-34 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7735 4092b3aaac631b356891ed9c34c293b2 293 PANTHER PTHR32552 1 290 2.0E-61 T 19-04-2016 AMED_7735 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF00665 Integrase core domain 129 243 2.2E-26 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_7735 4092b3aaac631b356891ed9c34c293b2 293 Pfam PF13276 HTH-like domain 47 104 4.6E-23 T 19-04-2016 IPR025948 HTH-like domain AMED_7735 4092b3aaac631b356891ed9c34c293b2 293 SUPERFAMILY SSF53098 124 283 2.12E-36 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7735 4092b3aaac631b356891ed9c34c293b2 293 Gene3D G3DSA:3.30.420.10 124 281 4.9E-34 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 PANTHER PTHR38464:SF1 7 471 7.4E-77 T 19-04-2016 AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 Gene3D G3DSA:3.20.14.10 368 469 9.5E-8 T 19-04-2016 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25|UniPathway: UPA00563 AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 PANTHER PTHR38464 7 471 7.4E-77 T 19-04-2016 AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 7 303 4.0E-7 T 19-04-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 SUPERFAMILY SSF53743 9 331 4.84E-69 T 19-04-2016 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 SUPERFAMILY SSF50443 328 472 1.26E-25 T 19-04-2016 IPR004216 L-fucose/L-arabinose isomerase, C-terminal AMED_4546 dcb60bb9ebf949457a9e940d7b08ca0b 473 Pfam PF02610 L-arabinose isomerase 31 340 1.4E-12 T 19-04-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_8647 9ba8e767540c9a8ea1cceb7b14a94a70 329 Gene3D G3DSA:3.40.50.150 74 190 5.2E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8647 9ba8e767540c9a8ea1cceb7b14a94a70 329 Pfam PF09243 Mitochondrial small ribosomal subunit Rsm22 51 326 1.5E-82 T 19-04-2016 IPR015324 Ribosomal protein Rsm22, bacterial-type GO:0006412|GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_8647 9ba8e767540c9a8ea1cceb7b14a94a70 329 PANTHER PTHR21320 37 328 5.9E-49 T 19-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 AMED_8647 9ba8e767540c9a8ea1cceb7b14a94a70 329 PANTHER PTHR21320:SF0 37 328 5.9E-49 T 19-04-2016 AMED_8647 9ba8e767540c9a8ea1cceb7b14a94a70 329 SUPERFAMILY SSF53335 31 217 2.97E-12 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 PANTHER PTHR11649 48 88 7.7E-12 T 19-04-2016 AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 Pfam PF00350 Dynamin family 48 200 2.2E-10 T 19-04-2016 IPR022812 Dynamin superfamily AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 Gene3D G3DSA:3.40.50.300 142 243 4.7E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 Gene3D G3DSA:3.40.50.300 39 90 4.7E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 PANTHER PTHR11649:SF36 139 242 7.7E-12 T 19-04-2016 AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 PANTHER PTHR11649 139 242 7.7E-12 T 19-04-2016 AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 PANTHER PTHR11649:SF36 595 609 7.7E-12 T 19-04-2016 AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 SUPERFAMILY SSF52540 40 278 5.1E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 PANTHER PTHR11649 595 609 7.7E-12 T 19-04-2016 AMED_9255 76e3d10c2fd9ddd316439d0858a3a105 612 PANTHER PTHR11649:SF36 48 88 7.7E-12 T 19-04-2016 AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 SUPERFAMILY SSF63411 255 442 5.83E-48 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 SUPERFAMILY SSF63411 28 230 1.04E-55 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 Gene3D G3DSA:3.30.830.10 36 240 4.6E-54 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 Gene3D G3DSA:3.30.830.10 257 441 9.9E-55 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 PANTHER PTHR11851 27 423 1.8E-122 T 19-04-2016 AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 Pfam PF00675 Insulinase (Peptidase family M16) 37 184 8.2E-38 T 19-04-2016 IPR011765 Peptidase M16, N-terminal AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 Pfam PF05193 Peptidase M16 inactive domain 194 369 8.3E-42 T 19-04-2016 IPR007863 Peptidase M16, C-terminal AMED_6317 414c68bdcd46b3a3554c328d4de38e31 454 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 58 81 - T 19-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMED_3388 05f2255222c03338b59b1e8553e61398 305 SUPERFAMILY SSF56645 1 114 5.76E-15 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3388 05f2255222c03338b59b1e8553e61398 305 PANTHER PTHR10909 1 305 4.6E-67 T 19-04-2016 AMED_3388 05f2255222c03338b59b1e8553e61398 305 Gene3D G3DSA:1.20.140.10 172 304 1.2E-28 T 19-04-2016 AMED_3388 05f2255222c03338b59b1e8553e61398 305 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 98 7.9E-10 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3388 05f2255222c03338b59b1e8553e61398 305 Gene3D G3DSA:1.10.540.10 1 92 8.7E-13 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3388 05f2255222c03338b59b1e8553e61398 305 PANTHER PTHR10909:SF312 1 305 4.6E-67 T 19-04-2016 AMED_3388 05f2255222c03338b59b1e8553e61398 305 SUPERFAMILY SSF47203 172 305 1.21E-31 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3388 05f2255222c03338b59b1e8553e61398 305 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 172 303 1.1E-21 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2801 12dde9b7959ae1174bd03ace788b599c 76 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 4.1E-20 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMED_2801 12dde9b7959ae1174bd03ace788b599c 76 Pfam PF03840 Preprotein translocase SecG subunit 4 72 7.7E-19 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMED_2743 3111b8a105efe90d4939ce227ad718be 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 128 1.4E-8 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_2743 3111b8a105efe90d4939ce227ad718be 132 SUPERFAMILY SSF54593 11 131 7.52E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2743 3111b8a105efe90d4939ce227ad718be 132 Gene3D G3DSA:3.10.180.10 12 128 1.0E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2188 626e9e9eed1f7172af4e06b4aeb10885 125 Gene3D G3DSA:2.60.300.12 21 115 2.8E-27 T 19-04-2016 IPR000361 FeS cluster biogenesis AMED_2188 626e9e9eed1f7172af4e06b4aeb10885 125 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 21 125 1.7E-34 T 19-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 AMED_2188 626e9e9eed1f7172af4e06b4aeb10885 125 PANTHER PTHR10072 21 125 3.5E-37 T 19-04-2016 AMED_2188 626e9e9eed1f7172af4e06b4aeb10885 125 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 107 124 - T 19-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site AMED_2188 626e9e9eed1f7172af4e06b4aeb10885 125 Pfam PF01521 Iron-sulphur cluster biosynthesis 21 122 1.8E-17 T 19-04-2016 IPR000361 FeS cluster biogenesis AMED_2188 626e9e9eed1f7172af4e06b4aeb10885 125 SUPERFAMILY SSF89360 21 115 7.46E-27 T 19-04-2016 IPR000361 FeS cluster biogenesis AMED_6806 07fa6079f2e7e9cb20ea6f6001ed7705 291 Gene3D G3DSA:3.20.20.30 10 290 2.1E-63 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6806 07fa6079f2e7e9cb20ea6f6001ed7705 291 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 17 256 3.0E-62 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_6806 07fa6079f2e7e9cb20ea6f6001ed7705 291 PANTHER PTHR30011:SF5 1 258 1.6E-53 T 19-04-2016 AMED_6806 07fa6079f2e7e9cb20ea6f6001ed7705 291 SUPERFAMILY SSF51679 10 289 1.0E-57 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6806 07fa6079f2e7e9cb20ea6f6001ed7705 291 Pfam PF00296 Luciferase-like monooxygenase 9 227 1.0E-50 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6806 07fa6079f2e7e9cb20ea6f6001ed7705 291 PANTHER PTHR30011 1 258 1.6E-53 T 19-04-2016 AMED_8500 960a8da366ae9b90d0b64f0277cbab89 191 SUPERFAMILY SSF102114 24 104 4.58E-9 T 19-04-2016 AMED_8500 960a8da366ae9b90d0b64f0277cbab89 191 Pfam PF04055 Radical SAM superfamily 25 104 2.0E-8 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_8500 960a8da366ae9b90d0b64f0277cbab89 191 PANTHER PTHR30352 9 144 1.3E-30 T 19-04-2016 AMED_8500 960a8da366ae9b90d0b64f0277cbab89 191 Gene3D G3DSA:3.20.20.70 25 100 3.4E-7 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8500 960a8da366ae9b90d0b64f0277cbab89 191 Pfam PF13353 4Fe-4S single cluster domain 16 142 2.6E-27 T 19-04-2016 AMED_4055 e97f71205b400e54801f2e3e39449388 259 Gene3D G3DSA:3.40.190.80 148 258 8.8E-21 T 19-04-2016 AMED_4055 e97f71205b400e54801f2e3e39449388 259 SUPERFAMILY SSF56655 3 257 3.27E-49 T 19-04-2016 AMED_4055 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 2.6E-20 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_4055 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 2.6E-20 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_4055 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 129 152 2.6E-20 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_4055 e97f71205b400e54801f2e3e39449388 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 2.6E-20 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_4055 e97f71205b400e54801f2e3e39449388 259 Gene3D G3DSA:3.30.540.10 3 147 8.7E-28 T 19-04-2016 AMED_4055 e97f71205b400e54801f2e3e39449388 259 Pfam PF00459 Inositol monophosphatase family 6 252 2.3E-33 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_4055 e97f71205b400e54801f2e3e39449388 259 PANTHER PTHR20854:SF4 79 257 9.4E-35 T 19-04-2016 AMED_4055 e97f71205b400e54801f2e3e39449388 259 PANTHER PTHR20854 79 257 9.4E-35 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 PANTHER PTHR18919:SF8 1 397 1.6E-96 T 19-04-2016 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 PIRSF PIRSF000429 1 396 2.0E-54 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Gene3D G3DSA:3.40.47.10 275 389 3.1E-15 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Gene3D G3DSA:3.40.47.10 3 239 9.8E-23 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 SUPERFAMILY SSF53901 3 239 1.6E-31 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Pfam PF02803 Thiolase, C-terminal domain 282 368 1.4E-8 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 SUPERFAMILY SSF53901 264 385 9.83E-22 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 Pfam PF00108 Thiolase, N-terminal domain 3 128 9.2E-14 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_6955 f6b2ec3a57b4fe6c3208f570db8a5c6c 397 PANTHER PTHR18919 1 397 1.6E-96 T 19-04-2016 AMED_0283 64974f597010fe4acbd01b1886677d8f 212 Pfam PF12697 Alpha/beta hydrolase family 6 206 1.5E-14 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0283 64974f597010fe4acbd01b1886677d8f 212 PANTHER PTHR10992 6 212 5.9E-21 T 19-04-2016 AMED_0283 64974f597010fe4acbd01b1886677d8f 212 SUPERFAMILY SSF53474 6 210 7.83E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0283 64974f597010fe4acbd01b1886677d8f 212 Gene3D G3DSA:3.40.50.1820 3 211 1.1E-29 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 Pfam PF00005 ABC transporter 22 158 3.6E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 PANTHER PTHR24220:SF414 6 234 3.3E-92 T 19-04-2016 AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 SUPERFAMILY SSF52540 4 225 2.25E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 SMART SM00382 29 207 8.1E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 Gene3D G3DSA:3.40.50.300 2 227 2.7E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8454 9fa14b1f68b1726403982d5bf436588f 279 PANTHER PTHR24220 6 234 3.3E-92 T 19-04-2016 AMED_7308 87a8e3c1daa1529c099d8895b006f9a1 295 Gene3D G3DSA:3.90.1200.10 145 259 4.6E-8 T 19-04-2016 AMED_7308 87a8e3c1daa1529c099d8895b006f9a1 295 SUPERFAMILY SSF56112 63 251 9.44E-14 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1650 418b09d93b27a08219597f29a28eab82 275 PANTHER PTHR10108 67 250 2.6E-19 T 19-04-2016 AMED_1650 418b09d93b27a08219597f29a28eab82 275 SUPERFAMILY SSF53335 45 213 1.98E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1650 418b09d93b27a08219597f29a28eab82 275 Gene3D G3DSA:3.40.50.150 53 210 3.0E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1650 418b09d93b27a08219597f29a28eab82 275 PANTHER PTHR10108:SF820 67 250 2.6E-19 T 19-04-2016 AMED_1650 418b09d93b27a08219597f29a28eab82 275 Pfam PF08241 Methyltransferase domain 67 158 6.6E-17 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_3868 0fab09b6d9c487aeb352aa315c41822d 131 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 54 117 6.5E-22 T 19-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMED_3868 0fab09b6d9c487aeb352aa315c41822d 131 PANTHER PTHR34075:SF2 4 122 6.0E-27 T 19-04-2016 AMED_3868 0fab09b6d9c487aeb352aa315c41822d 131 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 17 53 2.1E-12 T 19-04-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal AMED_3868 0fab09b6d9c487aeb352aa315c41822d 131 SUPERFAMILY SSF50249 4 125 8.05E-37 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_3868 0fab09b6d9c487aeb352aa315c41822d 131 PANTHER PTHR34075 4 122 6.0E-27 T 19-04-2016 AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 Gene3D G3DSA:1.10.10.10 15 99 8.8E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 PANTHER PTHR33154 5 101 5.1E-30 T 19-04-2016 AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 SUPERFAMILY SSF46785 6 95 2.86E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 SMART SM00418 16 95 3.0E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 Pfam PF12840 Helix-turn-helix domain 21 74 9.5E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 PANTHER PTHR33154:SF2 5 101 5.1E-30 T 19-04-2016 AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 2.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 2.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3777 a7642b01be3cbccc5052d6058466ee9d 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7515 4a8cd57130b3ec965eb4372bf2c03824 275 Pfam PF04199 Putative cyclase 42 211 3.7E-30 T 19-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 AMED_7515 4a8cd57130b3ec965eb4372bf2c03824 275 PANTHER PTHR31118:SF9 36 272 4.8E-46 T 19-04-2016 AMED_7515 4a8cd57130b3ec965eb4372bf2c03824 275 SUPERFAMILY SSF102198 40 265 1.31E-39 T 19-04-2016 AMED_7515 4a8cd57130b3ec965eb4372bf2c03824 275 Gene3D G3DSA:3.50.30.50 40 268 3.1E-45 T 19-04-2016 AMED_7515 4a8cd57130b3ec965eb4372bf2c03824 275 PANTHER PTHR31118 36 272 4.8E-46 T 19-04-2016 AMED_2454 65967406898c24d91e48c41c8bbe533a 379 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 13 294 1.7E-65 T 19-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_2454 65967406898c24d91e48c41c8bbe533a 379 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 379 99.375 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_2454 65967406898c24d91e48c41c8bbe533a 379 PANTHER PTHR36510 1 376 2.5E-146 T 19-04-2016 AMED_2454 65967406898c24d91e48c41c8bbe533a 379 PANTHER PTHR36510:SF1 1 376 2.5E-146 T 19-04-2016 AMED_2454 65967406898c24d91e48c41c8bbe533a 379 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 12 299 1.8E-102 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_2454 65967406898c24d91e48c41c8bbe533a 379 SUPERFAMILY SSF55931 3 372 5.49E-110 T 19-04-2016 AMED_8054 2518beb5629bbbb05507f0d023fd201e 307 Pfam PF02401 LytB protein 1 278 1.3E-88 T 19-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 AMED_8054 2518beb5629bbbb05507f0d023fd201e 307 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 278 3.8E-96 T 19-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 AMED_8054 2518beb5629bbbb05507f0d023fd201e 307 PANTHER PTHR30426 1 307 2.3E-146 T 19-04-2016 AMED_8054 2518beb5629bbbb05507f0d023fd201e 307 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 282 35.301 T 19-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 Gene3D G3DSA:1.10.10.10 1 78 7.8E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 SUPERFAMILY SSF46785 1 81 1.09E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 Pfam PF03466 LysR substrate binding domain 127 294 1.1E-17 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 SUPERFAMILY SSF53850 90 298 7.14E-19 T 19-04-2016 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 PANTHER PTHR30346 1 297 3.0E-57 T 19-04-2016 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 Gene3D G3DSA:3.40.190.10 175 255 4.0E-6 T 19-04-2016 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.0E-22 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.9E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.9E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.9E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6365 c144233f6c5d8abbb638a0d37f9a477a 301 Gene3D G3DSA:3.40.190.10 126 174 1.3E-9 T 19-04-2016 AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 95 7.4E-6 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 PANTHER PTHR11695 15 318 2.7E-81 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 PANTHER PTHR11695:SF294 15 318 2.7E-81 T 19-04-2016 AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 Gene3D G3DSA:3.40.50.720 154 240 8.6E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 SMART SM00829 10 318 3.5E-22 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 Pfam PF13602 Zinc-binding dehydrogenase 189 318 6.3E-25 T 19-04-2016 AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 Gene3D G3DSA:3.90.180.10 2 153 1.8E-42 T 19-04-2016 IPR011032 GroES-like AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 SUPERFAMILY SSF51735 119 295 1.36E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2015 2cc8ebcf37e3be08ceddc700a54b99c6 328 SUPERFAMILY SSF50129 2 147 8.52E-32 T 19-04-2016 IPR011032 GroES-like AMED_4296 869ac713ed9fac9fa7939fda6c9c8e04 239 Pfam PF05175 Methyltransferase small domain 32 178 6.0E-13 T 19-04-2016 IPR007848 Methyltransferase small domain GO:0008168 AMED_4296 869ac713ed9fac9fa7939fda6c9c8e04 239 SUPERFAMILY SSF53335 32 204 4.93E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4296 869ac713ed9fac9fa7939fda6c9c8e04 239 Gene3D G3DSA:3.40.50.150 31 201 4.2E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4296 869ac713ed9fac9fa7939fda6c9c8e04 239 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 125 131 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMED_4296 869ac713ed9fac9fa7939fda6c9c8e04 239 PANTHER PTHR18895 33 201 2.7E-33 T 19-04-2016 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 PANTHER PTHR11986 18 404 2.6E-152 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 SUPERFAMILY SSF53383 15 397 2.78E-120 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Gene3D G3DSA:3.40.640.10 66 304 1.5E-85 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Pfam PF00202 Aminotransferase class-III 30 395 4.8E-104 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Gene3D G3DSA:3.90.1150.10 308 397 1.2E-32 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Gene3D G3DSA:3.90.1150.10 17 65 1.2E-32 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 22 396 8.1E-139 T 19-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 PANTHER PTHR11986:SF79 18 404 2.6E-152 T 19-04-2016 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 224 261 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6041 3bcccb2455b2cf9b8f5b12c7dc4fcb2d 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 19 397 43.268 T 19-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 PANTHER PTHR22683 237 816 2.0E-204 T 19-04-2016 AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 Pfam PF09397 Ftsk gamma domain 746 802 1.4E-21 T 19-04-2016 IPR018541 FtsK gamma domain AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 Pfam PF01580 FtsK/SpoIIIE family 440 640 3.8E-61 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 PANTHER PTHR22683:SF41 237 816 2.0E-204 T 19-04-2016 AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 SMART SM00843 741 805 3.2E-29 T 19-04-2016 IPR018541 FtsK gamma domain AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 119 229 5.7E-7 T 19-04-2016 IPR025199 DNA translocase FtsK, 4TM region AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 SUPERFAMILY SSF46785 742 807 1.63E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 Gene3D G3DSA:3.40.50.300 414 706 8.6E-82 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6291 e72e2112399483ec1759c55dc9abfbec 829 SUPERFAMILY SSF52540 414 712 6.73E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6229 9aedf3f71b594ba63c1bd876851a845e 253 SUPERFAMILY SSF53474 12 240 9.0E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6229 9aedf3f71b594ba63c1bd876851a845e 253 PANTHER PTHR11487 18 226 9.2E-51 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_6229 9aedf3f71b594ba63c1bd876851a845e 253 Gene3D G3DSA:3.40.50.1820 12 128 1.4E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6229 9aedf3f71b594ba63c1bd876851a845e 253 Gene3D G3DSA:3.40.50.1820 181 229 1.4E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6229 9aedf3f71b594ba63c1bd876851a845e 253 Pfam PF00975 Thioesterase domain 24 238 1.3E-28 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 7.3E-13 T 19-04-2016 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 PANTHER PTHR36923 1 64 2.2E-16 T 19-04-2016 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 PANTHER PTHR36923:SF1 1 64 2.2E-16 T 19-04-2016 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 SUPERFAMILY SSF54862 2 62 4.89E-12 T 19-04-2016 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 6.3E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 6.3E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 6.3E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7142 5e0df55e0ff8d55d892d6aa621530c00 64 Gene3D G3DSA:3.30.70.20 1 64 5.2E-16 T 19-04-2016 AMED_3180 660b363604f7172e48d891d911ee09b0 511 Pfam PF07690 Major Facilitator Superfamily 71 459 1.2E-47 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3180 660b363604f7172e48d891d911ee09b0 511 Gene3D G3DSA:1.20.1250.20 60 241 1.4E-30 T 19-04-2016 AMED_3180 660b363604f7172e48d891d911ee09b0 511 Gene3D G3DSA:1.20.1250.20 311 508 2.0E-15 T 19-04-2016 AMED_3180 660b363604f7172e48d891d911ee09b0 511 SUPERFAMILY SSF103473 53 247 3.79E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3180 660b363604f7172e48d891d911ee09b0 511 SUPERFAMILY SSF103473 297 507 3.79E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3180 660b363604f7172e48d891d911ee09b0 511 PANTHER PTHR23501:SF48 12 508 6.9E-141 T 19-04-2016 AMED_3180 660b363604f7172e48d891d911ee09b0 511 PANTHER PTHR23501 12 508 6.9E-141 T 19-04-2016 AMED_3180 660b363604f7172e48d891d911ee09b0 511 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 65 463 6.4E-74 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 PANTHER PTHR18968:SF124 4 563 1.1E-224 T 19-04-2016 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 Gene3D G3DSA:3.40.50.1220 193 346 7.9E-41 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 Gene3D G3DSA:3.40.50.970 347 554 8.1E-53 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 426 445 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 PANTHER PTHR18968 4 563 1.1E-224 T 19-04-2016 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 1.4E-49 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 329 4.2E-26 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 544 3.6E-28 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 SUPERFAMILY SSF52518 365 565 2.86E-52 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 SUPERFAMILY SSF52518 3 185 5.68E-51 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 Gene3D G3DSA:3.40.50.970 2 183 4.4E-61 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3305 66dd85b26a596a83e10e2b86ba99ce05 597 SUPERFAMILY SSF52467 156 357 3.08E-43 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 PANTHER PTHR11695 16 325 7.0E-78 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 Gene3D G3DSA:3.40.50.720 152 256 1.1E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 90 1.8E-4 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 SUPERFAMILY SSF50129 1 152 4.4E-32 T 19-04-2016 IPR011032 GroES-like AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 PANTHER PTHR11695:SF605 16 325 7.0E-78 T 19-04-2016 AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 SUPERFAMILY SSF51735 118 263 1.57E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 SMART SM00829 11 324 1.9E-23 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 Pfam PF13602 Zinc-binding dehydrogenase 191 324 2.2E-20 T 19-04-2016 AMED_8599 14aca0e10b181ed1d6d569cfcb4e5ade 328 Gene3D G3DSA:3.90.180.10 3 151 1.6E-33 T 19-04-2016 IPR011032 GroES-like AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 2.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 Gene3D G3DSA:1.10.10.10 145 202 1.3E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 PANTHER PTHR26402 3 202 8.6E-90 T 19-04-2016 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 SUPERFAMILY SSF46894 127 202 1.46E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 5.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 5.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 5.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 PANTHER PTHR26402:SF137 3 202 8.6E-90 T 19-04-2016 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 SMART SM00421 139 196 3.3E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 Gene3D G3DSA:3.40.50.2300 2 144 4.6E-36 T 19-04-2016 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 SMART SM00448 3 116 1.3E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 Pfam PF00072 Response regulator receiver domain 6 116 4.8E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4548 1505030efd71a9f9e515836e6f43ef03 202 SUPERFAMILY SSF52172 2 129 6.12E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4265 632ca4924c33238c31fd637965edc505 449 PANTHER PTHR11699 5 445 4.8E-122 T 19-04-2016 AMED_4265 632ca4924c33238c31fd637965edc505 449 Gene3D G3DSA:3.40.309.10 243 408 2.1E-46 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_4265 632ca4924c33238c31fd637965edc505 449 Gene3D G3DSA:3.40.605.10 3 242 1.0E-66 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_4265 632ca4924c33238c31fd637965edc505 449 Pfam PF00171 Aldehyde dehydrogenase family 4 443 7.2E-110 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_4265 632ca4924c33238c31fd637965edc505 449 SUPERFAMILY SSF53720 3 445 4.32E-119 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_4265 632ca4924c33238c31fd637965edc505 449 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PANTHER PTHR11405 7 371 3.8E-184 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 5 373 44.303 T 19-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2749 695f759ee498c6404a7be56821137c8d 373 Gene3D G3DSA:3.40.50.880 156 371 9.1E-59 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_2749 695f759ee498c6404a7be56821137c8d 373 SMART SM01097 5 135 1.7E-82 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2749 695f759ee498c6404a7be56821137c8d 373 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 7 133 1.4E-50 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2749 695f759ee498c6404a7be56821137c8d 373 SUPERFAMILY SSF52021 6 138 1.31E-53 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00096 Glutamine amidotransferase superfamily signature 225 234 2.2E-11 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00096 Glutamine amidotransferase superfamily signature 253 264 2.2E-11 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00096 Glutamine amidotransferase superfamily signature 344 357 2.2E-11 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 183 197 7.2E-33 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 270 287 7.2E-33 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 253 269 7.2E-33 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 295 306 7.2E-33 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 222 236 7.2E-33 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 Pfam PF00117 Glutamine amidotransferase class-I 186 367 7.1E-37 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMED_2749 695f759ee498c6404a7be56821137c8d 373 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 7 371 2.0E-133 T 19-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00097 Anthranilate synthase component II signature 253 264 4.4E-6 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00097 Anthranilate synthase component II signature 225 234 4.4E-6 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 PRINTS PR00097 Anthranilate synthase component II signature 344 357 4.4E-6 T 19-04-2016 AMED_2749 695f759ee498c6404a7be56821137c8d 373 Gene3D G3DSA:3.50.30.20 6 138 6.6E-57 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2749 695f759ee498c6404a7be56821137c8d 373 SUPERFAMILY SSF52317 155 371 9.02E-48 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 PANTHER PTHR24220:SF559 1 209 1.0E-105 T 19-04-2016 AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 SMART SM00382 21 207 5.7E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 Gene3D G3DSA:3.40.50.300 1 209 1.1E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 SUPERFAMILY SSF52540 2 210 5.45E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 PANTHER PTHR24220 1 209 1.0E-105 T 19-04-2016 AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 Pfam PF00005 ABC transporter 12 158 1.5E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9151 ce94f860ce213d0c3c4e8d93357d3fc8 237 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3096 2c3ac81a5c0170b1cd99744392405034 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 6.6E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3096 2c3ac81a5c0170b1cd99744392405034 183 Gene3D G3DSA:1.10.357.10 5 158 1.2E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3096 2c3ac81a5c0170b1cd99744392405034 183 SUPERFAMILY SSF46689 7 79 2.77E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2431 7da5b277af8248a1a8b13f27a37a4bbe 397 Pfam PF02470 MlaD protein 39 111 9.3E-13 T 19-04-2016 IPR003399 Mce/MlaD AMED_2431 7da5b277af8248a1a8b13f27a37a4bbe 397 PANTHER PTHR33371 1 325 2.1E-93 T 19-04-2016 AMED_2431 7da5b277af8248a1a8b13f27a37a4bbe 397 PANTHER PTHR33371:SF5 1 325 2.1E-93 T 19-04-2016 AMED_2431 7da5b277af8248a1a8b13f27a37a4bbe 397 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 16 301 2.0E-64 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7482 102a16f07c140a2e55649befe9093d19 661 SUPERFAMILY SSF50370 527 657 7.76E-23 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7482 102a16f07c140a2e55649befe9093d19 661 Gene3D G3DSA:2.60.40.1180 419 512 3.8E-11 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_7482 102a16f07c140a2e55649befe9093d19 661 SMART SM00458 528 659 1.1E-6 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7482 102a16f07c140a2e55649befe9093d19 661 Gene3D G3DSA:2.80.10.50 537 657 5.0E-17 T 19-04-2016 AMED_7482 102a16f07c140a2e55649befe9093d19 661 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 573 646 9.2E-15 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7482 102a16f07c140a2e55649befe9093d19 661 SUPERFAMILY SSF51445 43 423 5.31E-29 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7482 102a16f07c140a2e55649befe9093d19 661 PANTHER PTHR11069 403 519 4.3E-106 T 19-04-2016 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 AMED_7482 102a16f07c140a2e55649befe9093d19 661 PANTHER PTHR11069 14 383 4.3E-106 T 19-04-2016 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 AMED_7482 102a16f07c140a2e55649befe9093d19 661 Pfam PF14587 O-Glycosyl hydrolase family 30 35 260 1.4E-15 T 19-04-2016 AMED_7482 102a16f07c140a2e55649befe9093d19 661 Gene3D G3DSA:3.20.20.80 41 418 2.3E-107 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7482 102a16f07c140a2e55649befe9093d19 661 PANTHER PTHR11069:SF8 403 519 4.3E-106 T 19-04-2016 AMED_7482 102a16f07c140a2e55649befe9093d19 661 PANTHER PTHR11069:SF8 14 383 4.3E-106 T 19-04-2016 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 SMART SM00382 29 232 4.8E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 SMART SM00382 374 541 7.0E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 PANTHER PTHR19211:SF46 314 544 1.9E-257 T 19-04-2016 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 PANTHER PTHR19211:SF46 14 293 1.9E-257 T 19-04-2016 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 SUPERFAMILY SSF52540 5 95 8.6E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 PANTHER PTHR19211 314 544 1.9E-257 T 19-04-2016 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 PANTHER PTHR19211 14 293 1.9E-257 T 19-04-2016 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 SUPERFAMILY SSF52540 128 249 8.6E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 Gene3D G3DSA:3.40.50.300 365 544 6.0E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 Gene3D G3DSA:3.40.50.300 7 278 7.3E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 SUPERFAMILY SSF52540 360 543 6.29E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 Pfam PF00005 ABC transporter 367 495 1.0E-15 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5046 b2c7db5f9aa14cb3574aa361c513258f 545 Pfam PF00005 ABC transporter 22 187 6.1E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 143 160 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 236 255 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 67 82 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 170 188 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 257 278 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 108 129 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PRINTS PR00740 Glycosyl hydrolase family 27 signature 31 50 5.3E-63 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 SUPERFAMILY SSF51011 296 388 2.59E-21 T 19-04-2016 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 411 469 4.7E-6 T 19-04-2016 IPR018905 Alpha-galactosidase, NEW3 domain AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF16499 Alpha galactosidase A 37 344 1.2E-95 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 SUPERFAMILY SSF51445 32 301 5.15E-96 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 SMART SM00776 507 651 1.2E-51 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 SUPERFAMILY SSF49785 510 649 6.38E-36 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 Gene3D G3DSA:2.60.40.1180 295 390 1.8E-28 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 Gene3D G3DSA:3.20.20.70 32 294 3.2E-123 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 Gene3D G3DSA:2.60.40.10 410 487 2.3E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 PANTHER PTHR11452 1 389 8.8E-181 T 19-04-2016 AMED_3645 411fb2553821fb16c8c8a661e9ebc431 651 Pfam PF08305 NPCBM/NEW2 domain 510 649 1.3E-41 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 PANTHER PTHR22845:SF4 15 395 2.8E-75 T 19-04-2016 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 PRINTS PR00364 Disease resistance protein signature 227 241 2.9E-6 T 19-04-2016 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 PRINTS PR00364 Disease resistance protein signature 139 153 2.9E-6 T 19-04-2016 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 PRINTS PR00364 Disease resistance protein signature 61 76 2.9E-6 T 19-04-2016 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 Pfam PF00931 NB-ARC domain 60 298 1.5E-9 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 PANTHER PTHR22845 15 395 2.8E-75 T 19-04-2016 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SUPERFAMILY SSF48452 473 680 3.96E-30 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 Gene3D G3DSA:3.40.50.300 63 163 3.3E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SMART SM00028 483 516 0.9 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SMART SM00028 563 596 0.0031 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SMART SM00028 643 676 1.2 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SMART SM00028 523 556 12.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SMART SM00028 603 636 0.58 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 Gene3D G3DSA:1.25.40.10 473 678 1.6E-31 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 SUPERFAMILY SSF52540 15 297 1.94E-25 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 Pfam PF13424 Tetratricopeptide repeat 565 635 1.2E-10 T 19-04-2016 AMED_5559 6c2aa9a589d8228c30ffa158701661a2 697 Pfam PF13424 Tetratricopeptide repeat 483 555 3.4E-11 T 19-04-2016 AMED_8104 c80fe3004d2a8e80708a040d222af095 385 PIRSF PIRSF001434 3 385 4.0E-144 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_8104 c80fe3004d2a8e80708a040d222af095 385 SUPERFAMILY SSF53383 12 384 3.54E-120 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_8104 c80fe3004d2a8e80708a040d222af095 385 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 384 1.1E-145 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_8104 c80fe3004d2a8e80708a040d222af095 385 PANTHER PTHR11808:SF57 1 384 5.1E-231 T 19-04-2016 AMED_8104 c80fe3004d2a8e80708a040d222af095 385 Gene3D G3DSA:3.40.640.10 9 253 4.0E-103 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8104 c80fe3004d2a8e80708a040d222af095 385 PANTHER PTHR11808 1 384 5.1E-231 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_8104 c80fe3004d2a8e80708a040d222af095 385 Gene3D G3DSA:3.90.1150.10 254 384 4.6E-46 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 Pfam PF00652 Ricin-type beta-trefoil lectin domain 41 162 7.3E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.60.40.10 265 357 3.8E-18 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.60.40.10 170 255 5.0E-11 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 Pfam PF07995 Glucose / Sorbosone dehydrogenase 376 669 3.0E-66 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 SUPERFAMILY SSF50952 368 670 9.55E-37 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.80.10.50 38 163 1.6E-40 T 19-04-2016 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 SUPERFAMILY SSF49265 171 358 3.05E-14 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 SMART SM00060 172 246 25.0 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 SMART SM00060 267 347 2.6E-6 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 PANTHER PTHR19328 368 601 3.0E-63 T 19-04-2016 AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 SMART SM00458 37 165 8.1E-34 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 SUPERFAMILY SSF50370 42 163 5.6E-40 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3713 e7581f1c955b75328c6c3ddca5ee7f32 690 Gene3D G3DSA:2.120.10.30 367 687 4.9E-84 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_2108 94acf990bbb155cd0aa59a723518e4b0 212 PANTHER PTHR36122 14 211 1.4E-38 T 19-04-2016 AMED_2108 94acf990bbb155cd0aa59a723518e4b0 212 Pfam PF04973 Nicotinamide mononucleotide transporter 18 196 8.7E-41 T 19-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AMED_2108 94acf990bbb155cd0aa59a723518e4b0 212 PANTHER PTHR36122:SF1 14 211 1.4E-38 T 19-04-2016 AMED_8206 ce3ca3afa988f7a5a217af471df48c38 424 Pfam PF04261 Dyp-type peroxidase family 62 412 1.0E-106 T 19-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- AMED_8206 ce3ca3afa988f7a5a217af471df48c38 424 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 10 423 1.5E-153 T 19-04-2016 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 KEGG: 00480+1.11.1.- AMED_8206 ce3ca3afa988f7a5a217af471df48c38 424 PANTHER PTHR30521 45 424 4.4E-153 T 19-04-2016 AMED_8206 ce3ca3afa988f7a5a217af471df48c38 424 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 62 412 5.0E-94 T 19-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- AMED_8206 ce3ca3afa988f7a5a217af471df48c38 424 PANTHER PTHR30521:SF4 45 424 4.4E-153 T 19-04-2016 AMED_8206 ce3ca3afa988f7a5a217af471df48c38 424 SUPERFAMILY SSF54909 57 415 1.79E-91 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 Gene3D G3DSA:1.10.10.10 2 84 7.5E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 Gene3D G3DSA:3.40.190.10 88 171 3.2E-24 T 19-04-2016 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 Pfam PF03466 LysR substrate binding domain 87 289 3.0E-37 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.1E-19 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 SUPERFAMILY SSF53850 88 290 3.84E-34 T 19-04-2016 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 Gene3D G3DSA:3.40.190.10 172 267 7.2E-19 T 19-04-2016 AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 SUPERFAMILY SSF46785 2 84 4.74E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5225 0b0594c0a6c7eb680eba350c4da9496c 292 PANTHER PTHR30346 1 289 4.5E-77 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PANTHER PTHR22773 6 582 1.6E-232 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 56 80 4.7E-11 T 19-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 262 284 4.7E-11 T 19-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 418 440 4.7E-11 T 19-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 82 102 4.7E-11 T 19-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PANTHER PTHR22773:SF50 6 582 1.6E-232 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 Pfam PF00361 Proton-conducting membrane transporter 132 421 3.0E-85 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 6 627 1.2E-220 T 19-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 119 2.8E-24 T 19-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 80 105 1.4E-64 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 155 176 1.4E-64 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 270 1.4E-64 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 222 243 1.4E-64 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 312 324 1.4E-64 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 108 128 1.4E-64 T 19-04-2016 AMED_0531 5ddd68ecc84178aa04072cce87b02650 633 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 419 438 1.4E-64 T 19-04-2016 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 PANTHER PTHR11271:SF37 2 444 2.9E-173 T 19-04-2016 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 PANTHER PTHR11271 2 444 2.9E-173 T 19-04-2016 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 Pfam PF01979 Amidohydrolase family 52 416 1.3E-61 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 Gene3D G3DSA:2.30.40.10 379 391 2.5E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 Gene3D G3DSA:2.30.40.10 2 57 2.5E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 Gene3D G3DSA:3.20.20.140 58 378 2.9E-104 T 19-04-2016 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 SUPERFAMILY SSF51338 369 443 7.69E-24 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 SUPERFAMILY SSF51338 2 55 7.69E-24 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1921 93b9e0249833b321f6687fa384ea6fed 446 SUPERFAMILY SSF51556 55 369 7.23E-91 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8813 1fd05c791713c456bcdd5d2eaa7afc5f 366 Pfam PF03824 High-affinity nickel-transport protein 60 348 1.0E-85 T 19-04-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AMED_8813 1fd05c791713c456bcdd5d2eaa7afc5f 366 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 63 344 6.5E-116 T 19-04-2016 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 AMED_8813 1fd05c791713c456bcdd5d2eaa7afc5f 366 PANTHER PTHR31611 12 360 1.3E-89 T 19-04-2016 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 411 1.0E-122 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 415 9.2E-26 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 Gene3D G3DSA:3.40.50.720 227 432 2.6E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 Gene3D G3DSA:1.20.5.100 196 225 1.7E-13 T 19-04-2016 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 Gene3D G3DSA:3.40.50.720 4 189 7.6E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 PANTHER PTHR11374:SF18 3 436 2.5E-181 T 19-04-2016 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 174 1.1E-49 T 19-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 SMART SM00984 316 415 4.3E-33 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 SUPERFAMILY SSF51735 4 190 3.57E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 SUPERFAMILY SSF48179 197 293 3.23E-29 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 PIRSF PIRSF500134 3 432 5.6E-136 T 19-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 197 288 8.9E-34 T 19-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 PIRSF PIRSF000124 3 430 2.4E-118 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 SUPERFAMILY SSF52413 308 424 2.22E-30 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_4269 d4fa851a8c291067ad7b0e99ce95dc95 436 PANTHER PTHR11374 3 436 2.5E-181 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 Gene3D G3DSA:3.40.50.300 4 233 1.4E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 Pfam PF00005 ABC transporter 24 171 1.1E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 SUPERFAMILY SSF52540 4 233 6.97E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 PANTHER PTHR24220:SF414 10 242 5.4E-80 T 19-04-2016 AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 PANTHER PTHR24220 10 242 5.4E-80 T 19-04-2016 AMED_7065 ba1c6c73c2568a4f907c996e2fc3b6bc 308 SMART SM00382 33 219 1.6E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1221 ab06165bdc1d5b5c3d829ad38dcb3f09 519 Pfam PF01425 Amidase 55 495 1.8E-103 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1221 ab06165bdc1d5b5c3d829ad38dcb3f09 519 SUPERFAMILY SSF75304 32 511 6.28E-111 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1221 ab06165bdc1d5b5c3d829ad38dcb3f09 519 PANTHER PTHR11895:SF8 23 512 2.3E-173 T 19-04-2016 AMED_1221 ab06165bdc1d5b5c3d829ad38dcb3f09 519 PANTHER PTHR11895 23 512 2.3E-173 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_1221 ab06165bdc1d5b5c3d829ad38dcb3f09 519 Gene3D G3DSA:3.90.1300.10 29 512 3.2E-134 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 SUPERFAMILY SSF81271 276 360 6.1E-35 T 19-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:3.10.20.30 255 360 5.1E-46 T 19-04-2016 IPR012675 Beta-grasp domain AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 SUPERFAMILY SSF52540 3 298 1.49E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 3 360 6.9E-129 T 19-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PANTHER PTHR23305:SF12 2 360 2.5E-173 T 19-04-2016 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Pfam PF01926 50S ribosome-binding GTPase 5 120 4.9E-21 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Pfam PF06071 Protein of unknown function (DUF933) 276 359 7.6E-39 T 19-04-2016 IPR013029 Domain of unknown function DUF933 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PANTHER PTHR23305 2 360 2.5E-173 T 19-04-2016 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 360 43.242 T 19-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:1.10.150.300 131 198 4.7E-19 T 19-04-2016 IPR023192 TGS-like domain AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 9.5E-34 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 9.5E-34 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 9.5E-34 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.5E-34 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 PIRSF PIRSF006641 1 360 2.9E-138 T 19-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:3.40.50.300 4 130 2.5E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8047 05a60c804cafa1bc28510219f8dfdee1 360 Gene3D G3DSA:3.40.50.300 199 248 2.5E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 PANTHER PTHR23407 2 187 1.6E-31 T 19-04-2016 AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 186 6.7E-35 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 SUPERFAMILY SSF100950 10 190 3.56E-36 T 19-04-2016 AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 PANTHER PTHR23407:SF1 2 187 1.6E-31 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 PIRSF PIRSF006806 8 190 3.1E-36 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 187 6.6E-33 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMED_8312 9a90714277b9ec2bec260f8cd6e9a3e0 196 Gene3D G3DSA:3.40.50.10420 11 188 1.1E-42 T 19-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 Gene3D G3DSA:3.40.50.1000 8 81 4.9E-44 T 19-04-2016 IPR023214 HAD-like domain AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 Gene3D G3DSA:3.40.50.1000 180 254 4.9E-44 T 19-04-2016 IPR023214 HAD-like domain AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 Pfam PF13344 Haloacid dehalogenase-like hydrolase 9 107 3.6E-26 T 19-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 PIRSF PIRSF000915 6 258 2.5E-56 T 19-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 PANTHER PTHR19288 8 264 2.6E-132 T 19-04-2016 AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 PANTHER PTHR19288:SF40 8 264 2.6E-132 T 19-04-2016 AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 9 229 5.8E-46 T 19-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 SUPERFAMILY SSF56784 8 254 1.4E-68 T 19-04-2016 IPR023214 HAD-like domain AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 Pfam PF13242 HAD-hyrolase-like 180 253 5.4E-24 T 19-04-2016 AMED_8509 f497c66d9135a040bd7bbabb4d4cc25e 264 Gene3D G3DSA:3.40.50.10410 86 179 1.3E-32 T 19-04-2016 IPR023215 Nitrophenylphosphatase-like domain AMED_5132 9fcf7741899e8b75923f7b9381089798 172 Gene3D G3DSA:3.10.180.10 3 128 5.8E-30 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5132 9fcf7741899e8b75923f7b9381089798 172 SUPERFAMILY SSF54593 1 128 1.75E-30 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5132 9fcf7741899e8b75923f7b9381089798 172 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 126 4.6E-15 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.50.50.60 45 79 3.6E-8 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 Pfam PF01593 Flavin containing amine oxidoreductase 59 534 3.7E-46 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 SUPERFAMILY SSF51905 499 539 3.24E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 SUPERFAMILY SSF51905 49 383 3.24E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.50.50.60 502 546 5.7E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.50.50.60 244 362 5.7E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 PANTHER PTHR10742 17 539 1.1E-104 T 19-04-2016 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.90.660.10 366 467 1.3E-26 T 19-04-2016 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 Gene3D G3DSA:3.90.660.10 80 154 1.3E-26 T 19-04-2016 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 SUPERFAMILY SSF54373 362 477 1.5E-26 T 19-04-2016 AMED_6946 818016ae91eb3c8a3f5d84abffaea6bd 563 PANTHER PTHR10742:SF277 17 539 1.1E-104 T 19-04-2016 AMED_5333 e2b0619213f2ab1c779e6bf1b271256e 254 PANTHER PTHR23076 1 235 8.5E-95 T 19-04-2016 AMED_5333 e2b0619213f2ab1c779e6bf1b271256e 254 Pfam PF01434 Peptidase family M41 67 238 9.1E-53 T 19-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 AMED_5333 e2b0619213f2ab1c779e6bf1b271256e 254 SUPERFAMILY SSF52540 2 98 2.66E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5333 e2b0619213f2ab1c779e6bf1b271256e 254 SUPERFAMILY SSF140990 88 236 1.15E-45 T 19-04-2016 AMED_5333 e2b0619213f2ab1c779e6bf1b271256e 254 Gene3D G3DSA:1.10.8.60 5 76 5.3E-23 T 19-04-2016 AMED_1940 9aed6f7627571b3ca779f9c925939914 232 PIRSF PIRSF018249 1 232 6.3E-60 T 19-04-2016 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 AMED_1940 9aed6f7627571b3ca779f9c925939914 232 SUPERFAMILY SSF53335 15 192 5.91E-21 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1940 9aed6f7627571b3ca779f9c925939914 232 Gene3D G3DSA:3.40.50.150 29 178 1.6E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8645 eb63ce496d24bdc5e59e0c2a82e22e4e 116 PANTHER PTHR35174 2 116 4.7E-31 T 19-04-2016 AMED_8645 eb63ce496d24bdc5e59e0c2a82e22e4e 116 PANTHER PTHR35174:SF1 2 116 4.7E-31 T 19-04-2016 AMED_8645 eb63ce496d24bdc5e59e0c2a82e22e4e 116 SUPERFAMILY SSF54909 2 115 4.29E-22 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8645 eb63ce496d24bdc5e59e0c2a82e22e4e 116 Pfam PF03795 YCII-related domain 2 114 8.2E-18 T 19-04-2016 IPR005545 YCII-related AMED_8645 eb63ce496d24bdc5e59e0c2a82e22e4e 116 Gene3D G3DSA:3.30.70.1060 2 114 3.5E-28 T 19-04-2016 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00385 P450 superfamily signature 289 300 1.3E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00385 P450 superfamily signature 362 371 1.3E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00385 P450 superfamily signature 371 382 1.3E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00385 P450 superfamily signature 253 270 1.3E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 Pfam PF00067 Cytochrome P450 28 399 2.3E-53 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 364 373 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00463 E-class P450 group I signature 288 306 1.9E-20 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00463 E-class P450 group I signature 329 353 1.9E-20 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00463 E-class P450 group I signature 371 394 1.9E-20 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00463 E-class P450 group I signature 37 56 1.9E-20 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00463 E-class P450 group I signature 361 371 1.9E-20 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PRINTS PR00463 E-class P450 group I signature 242 259 1.9E-20 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 SUPERFAMILY SSF48264 9 424 5.63E-83 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PANTHER PTHR24286:SF63 31 430 1.5E-148 T 19-04-2016 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 Gene3D G3DSA:1.10.630.10 10 425 5.7E-84 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4495 e6c7d0b023cd93326a788b10f73ee4bb 430 PANTHER PTHR24286 31 430 1.5E-148 T 19-04-2016 AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 SUPERFAMILY SSF102114 18 408 6.15E-104 T 19-04-2016 AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 PANTHER PTHR13932:SF5 4 408 5.8E-126 T 19-04-2016 AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 36 364 5.6E-70 T 19-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 Gene3D G3DSA:3.80.30.20 36 273 4.4E-33 T 19-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 Pfam PF04055 Radical SAM superfamily 38 213 1.8E-18 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 PANTHER PTHR13932 4 408 5.8E-126 T 19-04-2016 AMED_6654 2f5c1b00f5aaa2e19cc79af17360c698 410 SMART SM00729 33 258 1.3E-52 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_5371 a88c6714209d88f15c7a562118530cde 607 Gene3D G3DSA:3.50.50.60 392 452 1.1E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5371 a88c6714209d88f15c7a562118530cde 607 Gene3D G3DSA:3.50.50.60 256 299 1.1E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5371 a88c6714209d88f15c7a562118530cde 607 Pfam PF00743 Flavin-binding monooxygenase-like 144 287 4.2E-9 T 19-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5371 a88c6714209d88f15c7a562118530cde 607 SUPERFAMILY SSF51905 348 598 1.33E-14 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5371 a88c6714209d88f15c7a562118530cde 607 PANTHER PTHR23023:SF29 334 597 4.3E-202 T 19-04-2016 AMED_5371 a88c6714209d88f15c7a562118530cde 607 PANTHER PTHR23023:SF29 71 290 4.3E-202 T 19-04-2016 AMED_5371 a88c6714209d88f15c7a562118530cde 607 Pfam PF13450 NAD(P)-binding Rossmann-like domain 77 125 3.8E-7 T 19-04-2016 AMED_5371 a88c6714209d88f15c7a562118530cde 607 PANTHER PTHR23023 334 597 4.3E-202 T 19-04-2016 AMED_5371 a88c6714209d88f15c7a562118530cde 607 PANTHER PTHR23023 71 290 4.3E-202 T 19-04-2016 AMED_5371 a88c6714209d88f15c7a562118530cde 607 Gene3D G3DSA:3.50.50.60 492 585 3.0E-60 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5371 a88c6714209d88f15c7a562118530cde 607 Gene3D G3DSA:3.50.50.60 65 255 3.0E-60 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5371 a88c6714209d88f15c7a562118530cde 607 SUPERFAMILY SSF51905 74 316 3.42E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 PANTHER PTHR24423 167 427 1.5E-33 T 19-04-2016 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 SMART SM00304 173 225 1.1E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 SUPERFAMILY SSF158472 174 222 8.11E-5 T 19-04-2016 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 PANTHER PTHR24423:SF477 167 427 1.5E-33 T 19-04-2016 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 289 3.5E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 SMART SM00387 331 426 3.7E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 Pfam PF00672 HAMP domain 154 220 1.3E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 SUPERFAMILY SSF47384 212 290 7.85E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 Gene3D G3DSA:3.30.565.10 292 426 1.4E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 SMART SM00388 226 290 3.4E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 Gene3D G3DSA:1.10.287.130 218 285 4.1E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6942 81a98be1affd1bb562f0fdf762ca2f46 427 SUPERFAMILY SSF55874 291 425 3.44E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF52540 8 225 1.33E-79 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF52540 415 632 6.02E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF81767 260 367 9.68E-40 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PANTHER PTHR30612 564 851 0.0 T 19-04-2016 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PANTHER PTHR30612 13 519 0.0 T 19-04-2016 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SMART SM00958 225 357 7.8E-58 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Pfam PF01043 SecA preprotein cross-linking domain 261 357 1.4E-33 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 ProSitePatterns PS01312 SecA family signature. 499 514 - T 19-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 25 833 0.0 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 114 124 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 375 392 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 167 187 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 338 360 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 412 425 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 98 112 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 PRINTS PR00906 SecA protein signature 60 84 5.6E-71 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF81886 634 851 8.89E-70 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.40.50.300 368 415 4.9E-123 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.40.50.300 3 225 4.9E-123 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SMART SM00957 3 401 5.4E-275 T 19-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Hamap MF_01382 Protein translocase subunit SecA [secA]. 2 848 19.803 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Pfam PF07516 SecA Wing and Scaffold domain 631 845 3.0E-64 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Pfam PF07517 SecA DEAD-like domain 6 400 5.9E-129 T 19-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 SUPERFAMILY SSF52540 367 414 1.33E-79 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.40.50.300 416 633 3.2E-92 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:1.10.3060.10 662 846 4.3E-57 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMED_7988 aa8107f59493163cd4912321bbca6b2d 964 Gene3D G3DSA:3.90.1440.10 227 367 2.5E-43 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 Gene3D G3DSA:1.10.10.10 9 142 1.1E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 Pfam PF01047 MarR family 39 98 3.7E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 PANTHER PTHR33164 15 126 3.0E-38 T 19-04-2016 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 PANTHER PTHR33164:SF15 15 126 3.0E-38 T 19-04-2016 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 6.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 6.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 6.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 SUPERFAMILY SSF46785 12 142 2.35E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6778 26b11dbd1df5890f1c50b619c2bac5d2 153 SMART SM00347 32 134 1.5E-14 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1225 01ef34518cf565ab566e651afab6ebad 84 Pfam PF01384 Phosphate transporter family 21 69 1.4E-12 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_1225 01ef34518cf565ab566e651afab6ebad 84 PANTHER PTHR11101:SF54 4 67 1.2E-30 T 19-04-2016 AMED_1225 01ef34518cf565ab566e651afab6ebad 84 PANTHER PTHR11101 4 67 1.2E-30 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 PANTHER PTHR11561:SF0 11 607 0.0 T 19-04-2016 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 PIRSF PIRSF001348 2 607 3.8E-283 T 19-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 Pfam PF00821 Phosphoenolpyruvate carboxykinase 22 606 1.8E-282 T 19-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 Gene3D G3DSA:3.40.449.10 11 246 3.7E-93 T 19-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 271 279 - T 19-04-2016 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 SUPERFAMILY SSF53795 247 606 1.14E-157 T 19-04-2016 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 10 607 50.042 T 19-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 PANTHER PTHR11561 11 607 0.0 T 19-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 SUPERFAMILY SSF68923 12 246 4.24E-94 T 19-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 Gene3D G3DSA:3.90.228.20 247 316 1.1E-31 T 19-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 AMED_9253 c62998e2764d026e06bbb4009b14085c 607 Gene3D G3DSA:3.90.228.20 339 606 1.1E-103 T 19-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 AMED_5091 ec27630dcf1a89b1a42fa2972d93d42c 312 Gene3D G3DSA:3.10.180.10 140 285 3.7E-39 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5091 ec27630dcf1a89b1a42fa2972d93d42c 312 Gene3D G3DSA:3.10.180.10 6 122 1.1E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5091 ec27630dcf1a89b1a42fa2972d93d42c 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 142 256 1.7E-16 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_5091 ec27630dcf1a89b1a42fa2972d93d42c 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 120 9.6E-5 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_5091 ec27630dcf1a89b1a42fa2972d93d42c 312 SUPERFAMILY SSF54593 6 291 6.98E-41 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2475 323e722246acb279802dff12f53acfb3 536 Pfam PF00171 Aldehyde dehydrogenase family 45 501 1.6E-140 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_2475 323e722246acb279802dff12f53acfb3 536 PANTHER PTHR11699:SF202 10 534 9.7E-233 T 19-04-2016 AMED_2475 323e722246acb279802dff12f53acfb3 536 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 273 280 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_2475 323e722246acb279802dff12f53acfb3 536 Gene3D G3DSA:3.40.605.10 43 287 2.7E-72 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_2475 323e722246acb279802dff12f53acfb3 536 Gene3D G3DSA:3.40.309.10 288 465 1.1E-60 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_2475 323e722246acb279802dff12f53acfb3 536 SUPERFAMILY SSF53720 40 505 1.31E-138 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_2475 323e722246acb279802dff12f53acfb3 536 PANTHER PTHR11699 10 534 9.7E-233 T 19-04-2016 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 PANTHER PTHR26402 2 211 6.6E-95 T 19-04-2016 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 SUPERFAMILY SSF52172 1 175 1.39E-34 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 203 4.7E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 Gene3D G3DSA:1.10.10.10 123 211 3.4E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 PANTHER PTHR26402:SF564 2 211 6.6E-95 T 19-04-2016 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 Gene3D G3DSA:3.40.50.2300 1 122 1.4E-38 T 19-04-2016 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 Pfam PF00072 Response regulator receiver domain 4 115 3.9E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 SMART SM00448 2 114 6.0E-32 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0948 d5e86d2e37a8b8b94db3256b0035a5e5 216 SMART SM00421 147 204 1.3E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 PANTHER PTHR11364:SF0 1 278 2.4E-85 T 19-04-2016 AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SMART SM00450 6 132 1.1E-22 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SMART SM00450 153 272 4.0E-14 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Gene3D G3DSA:3.40.250.10 2 149 3.1E-48 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Gene3D G3DSA:3.40.250.10 150 278 3.7E-38 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Pfam PF00581 Rhodanese-like domain 17 128 4.6E-16 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 Pfam PF00581 Rhodanese-like domain 158 268 2.4E-12 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 PANTHER PTHR11364 1 278 2.4E-85 T 19-04-2016 AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SUPERFAMILY SSF52821 151 278 9.43E-33 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2417 95d426e6a18b0a5e7bb6f24c161ceb1d 281 SUPERFAMILY SSF52821 3 149 1.13E-38 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 Gene3D G3DSA:1.10.287.860 168 214 1.6E-14 T 19-04-2016 AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 Gene3D G3DSA:3.30.460.10 26 165 6.7E-35 T 19-04-2016 AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 Pfam PF04607 Region found in RelA / SpoT proteins 62 182 8.8E-33 T 19-04-2016 IPR007685 RelA/SpoT GO:0015969 AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 PANTHER PTHR21262:SF11 25 215 9.9E-49 T 19-04-2016 AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 PANTHER PTHR21262 25 215 9.9E-49 T 19-04-2016 AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 SUPERFAMILY SSF81301 25 213 6.87E-52 T 19-04-2016 AMED_3353 3318f5ba584b3ba6d8a6afac15650428 215 SMART SM00954 62 185 4.0E-36 T 19-04-2016 IPR007685 RelA/SpoT GO:0015969 AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SUPERFAMILY SSF51126 37 413 1.95E-19 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SUPERFAMILY SSF51126 460 524 1.95E-19 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 Pfam PF02018 Carbohydrate binding domain 533 645 3.2E-8 T 19-04-2016 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 Pfam PF13229 Right handed beta helix region 215 402 6.6E-9 T 19-04-2016 AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SUPERFAMILY SSF49785 533 661 1.13E-10 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 Gene3D G3DSA:2.160.20.10 315 524 6.1E-19 T 19-04-2016 IPR012334 Pectin lyase fold AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 Gene3D G3DSA:2.160.20.10 40 283 6.1E-19 T 19-04-2016 IPR012334 Pectin lyase fold AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 Gene3D G3DSA:2.60.120.260 534 661 1.9E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 139 166 480.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 339 360 1500.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 172 205 2900.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 269 308 240.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 421 443 2100.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 309 331 8900.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 246 268 13.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7830 537a9d54a1041d4d7612dba6b318d8bf 662 SMART SM00710 213 235 97.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_8249 bd5d61e47c54bed178dca9f2ca047a87 475 Pfam PF03990 Domain of unknown function (DUF348) 138 177 7.6E-14 T 19-04-2016 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- AMED_8249 bd5d61e47c54bed178dca9f2ca047a87 475 Gene3D G3DSA:1.10.530.10 380 474 3.3E-39 T 19-04-2016 AMED_8249 bd5d61e47c54bed178dca9f2ca047a87 475 SMART SM01208 309 387 9.8E-28 T 19-04-2016 IPR011098 G5 domain AMED_8249 bd5d61e47c54bed178dca9f2ca047a87 475 Pfam PF06737 Transglycosylase-like domain 396 471 2.7E-32 T 19-04-2016 IPR010618 Transglycosylase-like AMED_8249 bd5d61e47c54bed178dca9f2ca047a87 475 Pfam PF07501 G5 domain 313 386 1.6E-22 T 19-04-2016 IPR011098 G5 domain AMED_8249 bd5d61e47c54bed178dca9f2ca047a87 475 SUPERFAMILY SSF53955 394 474 1.18E-29 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 Gene3D G3DSA:1.10.10.60 272 319 2.9E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 Gene3D G3DSA:3.40.50.880 7 222 5.0E-57 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 SMART SM00342 233 316 3.9E-26 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 PANTHER PTHR11019 74 324 1.4E-76 T 19-04-2016 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 Pfam PF01965 DJ-1/PfpI family 7 177 4.4E-26 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 SUPERFAMILY SSF52317 5 198 2.12E-49 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 SUPERFAMILY SSF46689 269 319 8.06E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 PANTHER PTHR11019:SF58 74 324 1.4E-76 T 19-04-2016 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 Gene3D G3DSA:1.10.10.60 223 270 4.1E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 SUPERFAMILY SSF46689 217 267 4.66E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5280 39c8d41951d12e194ea49c5a782b57ad 325 Pfam PF12833 Helix-turn-helix domain 239 317 1.5E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 32 308 1.0E-63 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 SUPERFAMILY SSF160240 229 308 1.83E-16 T 19-04-2016 AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 Pfam PF01545 Cation efflux family 36 227 2.2E-38 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 Gene3D G3DSA:1.20.1510.10 32 227 2.5E-38 T 19-04-2016 IPR027469 Cation efflux protein transmembrane domain AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 PANTHER PTHR11562 4 317 6.1E-117 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 Pfam PF16916 Dimerisation domain of Zinc Transporter 232 308 3.0E-16 T 19-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 Gene3D G3DSA:3.30.70.1350 228 308 9.4E-19 T 19-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 PANTHER PTHR11562:SF55 4 317 6.1E-117 T 19-04-2016 AMED_5836 e6dc45a548219f09a6c0a1e24016823b 322 SUPERFAMILY SSF161111 28 228 1.27E-46 T 19-04-2016 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 Gene3D G3DSA:3.30.200.20 13 93 1.8E-24 T 19-04-2016 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 Gene3D G3DSA:2.60.40.290 363 451 2.0E-27 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 PANTHER PTHR24362:SF160 16 353 1.2E-77 T 19-04-2016 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 Gene3D G3DSA:1.10.510.10 94 274 1.4E-46 T 19-04-2016 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 Pfam PF00553 Cellulose binding domain 364 451 1.4E-23 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 SUPERFAMILY SSF56112 21 353 5.93E-67 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 Pfam PF00069 Protein kinase domain 25 273 1.3E-44 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 SMART SM00637 364 459 2.4E-24 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 147 159 - T 19-04-2016 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 SUPERFAMILY SSF49384 359 450 3.28E-25 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3199 3fde9f0d2d3fee912cf802544b9f5f0f 463 PANTHER PTHR24362 16 353 1.2E-77 T 19-04-2016 AMED_1163 96c1c31b9df7f6e626b6c13b688e7147 167 Gene3D G3DSA:3.40.50.300 3 164 5.3E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1163 96c1c31b9df7f6e626b6c13b688e7147 167 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 148 1.9E-52 T 19-04-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 AMED_1163 96c1c31b9df7f6e626b6c13b688e7147 167 Pfam PF01202 Shikimate kinase 12 161 1.1E-11 T 19-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_1163 96c1c31b9df7f6e626b6c13b688e7147 167 SUPERFAMILY SSF52540 5 162 1.72E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1163 96c1c31b9df7f6e626b6c13b688e7147 167 PANTHER PTHR11603 3 165 2.9E-70 T 19-04-2016 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF00310 Glutamine amidotransferases class-II 22 442 2.6E-171 T 19-04-2016 IPR017932 Glutamine amidotransferase type 2 domain AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 SUPERFAMILY SSF69336 1235 1495 1.7E-88 T 19-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:3.20.20.70 867 1218 4.1E-176 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF01645 Conserved region in glutamate synthase 821 1185 2.9E-151 T 19-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF04898 Glutamate synthase central domain 469 756 2.2E-108 T 19-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:3.20.20.70 453 808 2.6E-99 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 SUPERFAMILY SSF56235 22 444 1.54E-143 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:3.60.20.10 22 452 1.3E-176 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 PANTHER PTHR11938 11 1499 0.0 T 19-04-2016 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Gene3D G3DSA:2.160.20.60 1240 1510 2.7E-102 T 19-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 SUPERFAMILY SSF51395 457 1220 9.77E-259 T 19-04-2016 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 Pfam PF01493 GXGXG motif 1266 1443 3.2E-77 T 19-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_2306 5f9fd61bab73fb216318dc173a226ec6 1517 PANTHER PTHR11938:SF1 11 1499 0.0 T 19-04-2016 AMED_7669 576cbbb1101caa92ac050ddd719c0e43 214 PANTHER PTHR12428 16 212 9.9E-21 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMED_7669 576cbbb1101caa92ac050ddd719c0e43 214 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 25 211 3.1E-30 T 19-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal AMED_7669 576cbbb1101caa92ac050ddd719c0e43 214 Pfam PF02096 60Kd inner membrane protein 26 211 5.9E-28 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 Pfam PF13631 Cytochrome b(N-terminal)/b6/petB 124 298 6.3E-62 T 19-04-2016 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 PANTHER PTHR19271 96 474 4.1E-199 T 19-04-2016 AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 PANTHER PTHR19271 18 78 4.1E-199 T 19-04-2016 AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 PANTHER PTHR19271:SF7 96 474 4.1E-199 T 19-04-2016 AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 PANTHER PTHR19271:SF7 18 78 4.1E-199 T 19-04-2016 AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 Gene3D G3DSA:1.20.810.10 25 445 7.8E-87 T 19-04-2016 IPR027387 Cytochrome b/b6-like domain AMED_2203 c5d3252808d9d78b6d28f3ff72f72022 560 SUPERFAMILY SSF81342 24 303 5.65E-61 T 19-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 SUPERFAMILY SSF55486 5 148 1.42E-36 T 19-04-2016 AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 PANTHER PTHR22881 3 148 4.4E-38 T 19-04-2016 AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 118 128 - T 19-04-2016 IPR020549 Endoribonuclease YbeY, conserved site AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 Gene3D G3DSA:3.40.390.30 6 149 1.0E-40 T 19-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 Pfam PF02130 Uncharacterized protein family UPF0054 14 147 5.8E-35 T 19-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 157 20.023 T 19-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMED_6624 d5402df8102b69f2516ab049e1549cd9 190 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 36 148 3.8E-30 T 19-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMED_4571 7312268210263aedaf69e9e56e71326e 578 Gene3D G3DSA:3.40.50.1220 210 354 4.6E-35 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4571 7312268210263aedaf69e9e56e71326e 578 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 412 560 1.4E-26 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_4571 7312268210263aedaf69e9e56e71326e 578 SUPERFAMILY SSF52518 388 570 1.16E-46 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4571 7312268210263aedaf69e9e56e71326e 578 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 448 467 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_4571 7312268210263aedaf69e9e56e71326e 578 SUPERFAMILY SSF52467 213 394 1.16E-34 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4571 7312268210263aedaf69e9e56e71326e 578 PANTHER PTHR18968 7 567 5.4E-150 T 19-04-2016 AMED_4571 7312268210263aedaf69e9e56e71326e 578 Gene3D G3DSA:3.40.50.970 25 202 6.2E-59 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4571 7312268210263aedaf69e9e56e71326e 578 Gene3D G3DSA:3.40.50.970 360 568 2.2E-50 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4571 7312268210263aedaf69e9e56e71326e 578 SUPERFAMILY SSF52518 27 199 6.73E-47 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4571 7312268210263aedaf69e9e56e71326e 578 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 218 344 8.2E-24 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_4571 7312268210263aedaf69e9e56e71326e 578 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 28 193 2.5E-49 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 Gene3D G3DSA:3.40.605.10 3 243 2.2E-85 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 230 237 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 Gene3D G3DSA:3.40.309.10 244 422 3.9E-62 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 SUPERFAMILY SSF53720 3 450 3.14E-151 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 258 269 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 PANTHER PTHR11699:SF109 3 448 1.0E-231 T 19-04-2016 IPR015657 Aminobutyraldehyde dehydrogenase KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3|UniPathway: UPA00188 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 PANTHER PTHR11699 3 448 1.0E-231 T 19-04-2016 AMED_2620 fecd36f4a913df090fe2007da148c8fc 452 Pfam PF00171 Aldehyde dehydrogenase family 3 447 8.6E-154 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.3E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.3E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.3E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 PANTHER PTHR30346:SF7 1 309 3.2E-46 T 19-04-2016 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 Pfam PF03466 LysR substrate binding domain 105 292 8.1E-8 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.4E-19 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 SUPERFAMILY SSF46785 3 83 2.87E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 Gene3D G3DSA:3.40.190.10 103 173 6.1E-10 T 19-04-2016 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 Gene3D G3DSA:3.40.190.10 268 287 6.1E-10 T 19-04-2016 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 PANTHER PTHR30346 1 309 3.2E-46 T 19-04-2016 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 SUPERFAMILY SSF53850 104 297 5.33E-10 T 19-04-2016 AMED_4015 4a2fcb470c73d596acb226a7ed93a956 321 Gene3D G3DSA:1.10.10.10 2 82 4.6E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9039 9fe3c58d4710dd0529c7fcfd858df250 277 Pfam PF04672 S-adenosyl methyltransferase 14 277 2.4E-83 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_9039 9fe3c58d4710dd0529c7fcfd858df250 277 PIRSF PIRSF017393 1 277 8.2E-92 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_9039 9fe3c58d4710dd0529c7fcfd858df250 277 Gene3D G3DSA:3.40.50.150 5 277 3.6E-101 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9039 9fe3c58d4710dd0529c7fcfd858df250 277 SUPERFAMILY SSF53335 18 259 2.82E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7020 cfc032b153777e340b06877d1a9ac405 404 Gene3D G3DSA:1.10.630.10 10 404 1.2E-111 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 323 338 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 277 288 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 90 101 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 344 353 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 195 217 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 295 322 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 353 364 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 142 158 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00359 B-class P450 signature 159 174 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PANTHER PTHR11712 24 404 8.2E-74 T 19-04-2016 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 SUPERFAMILY SSF48264 15 404 9.17E-87 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 353 364 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 277 288 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 344 353 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 PRINTS PR00385 P450 superfamily signature 241 258 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7020 cfc032b153777e340b06877d1a9ac405 404 Pfam PF00067 Cytochrome P450 275 374 1.0E-20 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8690 c52c1a9159de37a9030d1818e53a6e2b 212 Gene3D G3DSA:2.60.120.10 97 176 7.5E-8 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8690 c52c1a9159de37a9030d1818e53a6e2b 212 SUPERFAMILY SSF51182 65 185 1.91E-9 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_2456 a50e9a4c1e224ae9811c9dae6eae51d0 255 Pfam PF12146 Serine aminopeptidase, S33 21 231 3.7E-20 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_2456 a50e9a4c1e224ae9811c9dae6eae51d0 255 PANTHER PTHR11614 21 248 5.2E-29 T 19-04-2016 AMED_2456 a50e9a4c1e224ae9811c9dae6eae51d0 255 SUPERFAMILY SSF53474 175 246 1.5E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2456 a50e9a4c1e224ae9811c9dae6eae51d0 255 SUPERFAMILY SSF53474 19 122 1.5E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2456 a50e9a4c1e224ae9811c9dae6eae51d0 255 Gene3D G3DSA:3.40.50.1820 14 245 5.2E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2456 a50e9a4c1e224ae9811c9dae6eae51d0 255 PIRSF PIRSF017388 2 249 3.2E-65 T 19-04-2016 IPR012354 Esterase/lipase GO:0052689 AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PANTHER PTHR24319 12 261 1.3E-43 T 19-04-2016 AMED_5703 0838854164e79184d3bb6b534a5f6922 263 Gene3D G3DSA:3.40.50.720 12 259 4.8E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 2.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5703 0838854164e79184d3bb6b534a5f6922 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 258 3.8E-44 T 19-04-2016 AMED_5703 0838854164e79184d3bb6b534a5f6922 263 SUPERFAMILY SSF51735 11 259 1.01E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5703 0838854164e79184d3bb6b534a5f6922 263 PANTHER PTHR24319:SF23 12 261 1.3E-43 T 19-04-2016 AMED_3278 b5d2b2e3ec8464a31d6adc075d31432c 129 Gene3D G3DSA:2.30.30.240 15 96 3.7E-4 T 19-04-2016 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PANTHER PTHR22762 301 566 3.5E-70 T 19-04-2016 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 617 691 1.8E-14 T 19-04-2016 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PANTHER PTHR22762:SF81 301 566 3.5E-70 T 19-04-2016 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 SUPERFAMILY SSF51445 296 626 3.96E-99 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 Gene3D G3DSA:3.20.20.70 294 595 4.2E-53 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 Pfam PF02065 Melibiase 263 603 1.2E-116 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 436 451 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 328 343 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 488 504 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 378 400 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 300 314 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 264 284 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 513 529 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PRINTS PR00743 Glycosyl hydrolase family 36 signature 213 228 1.3E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 PIRSF PIRSF005536 2 694 3.9E-180 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_5042 a4154a905615c4bc3f02bf8f646fce3f 696 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 32 249 7.1E-48 T 19-04-2016 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_4824 f59957f87443a1e956122363587f2703 124 PANTHER PTHR33336 24 123 5.2E-16 T 19-04-2016 AMED_4824 f59957f87443a1e956122363587f2703 124 SUPERFAMILY SSF54909 24 97 4.65E-20 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4824 f59957f87443a1e956122363587f2703 124 Pfam PF03992 Antibiotic biosynthesis monooxygenase 24 93 3.4E-14 T 19-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain AMED_4824 f59957f87443a1e956122363587f2703 124 Gene3D G3DSA:3.30.70.900 23 98 1.4E-20 T 19-04-2016 AMED_0718 15be8bab26000a59e779c295c8c35ee6 454 PIRSF PIRSF017804 1 453 1.6E-111 T 19-04-2016 IPR006707 Type VII secretion system membrane protein EccD AMED_0718 15be8bab26000a59e779c295c8c35ee6 454 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 1 74 1.0E-21 T 19-04-2016 IPR024962 YukD-like AMED_0718 15be8bab26000a59e779c295c8c35ee6 454 TIGRFAM TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD 1 450 3.9E-88 T 19-04-2016 IPR006707 Type VII secretion system membrane protein EccD AMED_5773 0a6c8a0053b553b8cead893d88110cbf 284 Gene3D G3DSA:3.40.50.2300 3 111 9.8E-23 T 19-04-2016 AMED_5773 0a6c8a0053b553b8cead893d88110cbf 284 SUPERFAMILY SSF53822 2 253 1.09E-48 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5773 0a6c8a0053b553b8cead893d88110cbf 284 Gene3D G3DSA:3.40.50.2300 112 281 1.8E-43 T 19-04-2016 AMED_5773 0a6c8a0053b553b8cead893d88110cbf 284 Pfam PF13377 Periplasmic binding protein-like domain 112 281 3.6E-28 T 19-04-2016 AMED_5773 0a6c8a0053b553b8cead893d88110cbf 284 PANTHER PTHR30146 2 283 3.2E-53 T 19-04-2016 AMED_5125 5bb542672459f88b6977817ebc5afb37 207 Gene3D G3DSA:3.40.50.360 8 206 1.6E-40 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5125 5bb542672459f88b6977817ebc5afb37 207 Pfam PF02525 Flavodoxin-like fold 8 179 8.4E-30 T 19-04-2016 IPR003680 Flavodoxin-like fold AMED_5125 5bb542672459f88b6977817ebc5afb37 207 PANTHER PTHR10204 6 149 2.4E-21 T 19-04-2016 AMED_5125 5bb542672459f88b6977817ebc5afb37 207 PANTHER PTHR10204:SF40 6 149 2.4E-21 T 19-04-2016 AMED_5125 5bb542672459f88b6977817ebc5afb37 207 SUPERFAMILY SSF52218 8 206 2.71E-38 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 PANTHER PTHR11986:SF18 7 409 4.4E-191 T 19-04-2016 IPR010164 Ornithine aminotransferase GO:0008483|GO:0030170 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 Gene3D G3DSA:3.90.1150.10 318 408 7.0E-35 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 Gene3D G3DSA:3.90.1150.10 16 68 7.0E-35 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 SUPERFAMILY SSF53383 14 408 4.74E-119 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 Gene3D G3DSA:3.40.640.10 69 314 6.5E-82 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 Pfam PF00202 Aminotransferase class-III 27 408 2.9E-114 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 233 270 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 16 408 7.4E-144 T 19-04-2016 IPR010164 Ornithine aminotransferase GO:0008483|GO:0030170 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_2683 f9a8d6f4a784d3c74817eb11887761c7 410 PANTHER PTHR11986 7 409 4.4E-191 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6786 e924612c5be11b717a796daa4428956a 525 Gene3D G3DSA:3.30.450.20 34 68 2.1E-6 T 19-04-2016 AMED_6786 e924612c5be11b717a796daa4428956a 525 Gene3D G3DSA:3.30.450.20 107 125 2.1E-6 T 19-04-2016 AMED_6786 e924612c5be11b717a796daa4428956a 525 SUPERFAMILY SSF81606 317 521 1.18E-7 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6786 e924612c5be11b717a796daa4428956a 525 PANTHER PTHR21021 31 71 1.1E-44 T 19-04-2016 AMED_6786 e924612c5be11b717a796daa4428956a 525 PANTHER PTHR21021 280 522 1.1E-44 T 19-04-2016 AMED_6786 e924612c5be11b717a796daa4428956a 525 Gene3D G3DSA:3.30.450.40 126 282 2.0E-4 T 19-04-2016 IPR029016 GAF domain-like AMED_6786 e924612c5be11b717a796daa4428956a 525 PANTHER PTHR21021:SF19 31 71 1.1E-44 T 19-04-2016 AMED_6786 e924612c5be11b717a796daa4428956a 525 PANTHER PTHR21021:SF19 280 522 1.1E-44 T 19-04-2016 AMED_6786 e924612c5be11b717a796daa4428956a 525 SMART SM00331 302 523 3.4E-40 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6786 e924612c5be11b717a796daa4428956a 525 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 332 522 1.8E-43 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6773 22c73b053abda8749117c9416ef94227 204 Gene3D G3DSA:1.10.357.10 8 157 1.0E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6773 22c73b053abda8749117c9416ef94227 204 PANTHER PTHR30055 9 151 4.7E-15 T 19-04-2016 AMED_6773 22c73b053abda8749117c9416ef94227 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.3E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6773 22c73b053abda8749117c9416ef94227 204 SUPERFAMILY SSF46689 7 76 1.49E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6773 22c73b053abda8749117c9416ef94227 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_6773 22c73b053abda8749117c9416ef94227 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6773 22c73b053abda8749117c9416ef94227 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 SUPERFAMILY SSF51735 3 249 4.47E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 1.4E-62 T 19-04-2016 AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 Gene3D G3DSA:3.40.50.720 4 250 2.8E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.6E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.6E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.6E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PANTHER PTHR24321:SF6 3 250 5.2E-55 T 19-04-2016 AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PANTHER PTHR24321 3 250 5.2E-55 T 19-04-2016 AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1948 99d231eaca2b271f9bf1d4a4640e0ce0 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 186 0.0038 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 Pfam PF00501 AMP-binding enzyme 16 399 2.1E-86 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 Gene3D G3DSA:2.30.38.10 318 393 1.9E-25 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 Gene3D G3DSA:3.40.50.980 162 317 1.4E-28 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 Gene3D G3DSA:3.40.50.980 9 161 1.4E-36 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 PANTHER PTHR24095 9 492 1.3E-127 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 Gene3D G3DSA:3.30.300.30 394 491 4.9E-27 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 Pfam PF13193 AMP-binding enzyme C-terminal domain 408 480 8.9E-17 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 SUPERFAMILY SSF56801 8 493 2.49E-132 T 19-04-2016 AMED_8399 10daa5f1c8d251ea74e9f84b074647ef 507 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_9086 88bd080199db680fabb140bded1516b3 424 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 411 2.8E-147 T 19-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 281 288 - T 19-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 411 39.384 T 19-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 287 2.3E-66 T 19-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 SUPERFAMILY SSF52440 2 101 1.44E-29 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_9086 88bd080199db680fabb140bded1516b3 424 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 6.8E-29 T 19-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 323 408 9.0E-28 T 19-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.90.600.10 322 410 1.7E-30 T 19-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 SUPERFAMILY SSF56059 102 311 6.51E-52 T 19-04-2016 AMED_9086 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.40.50.20 2 93 1.3E-31 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_9086 88bd080199db680fabb140bded1516b3 424 SMART SM01210 322 411 4.3E-41 T 19-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9086 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.30.1490.20 121 182 7.1E-14 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_9086 88bd080199db680fabb140bded1516b3 424 Gene3D G3DSA:3.30.470.20 183 318 3.4E-54 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_9086 88bd080199db680fabb140bded1516b3 424 SUPERFAMILY SSF51246 321 410 4.24E-25 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_9086 88bd080199db680fabb140bded1516b3 424 SMART SM01209 101 287 1.2E-107 T 19-04-2016 AMED_9086 88bd080199db680fabb140bded1516b3 424 PANTHER PTHR10520 1 415 1.3E-197 T 19-04-2016 AMED_8665 365c1a701ce6860df231b9417323f90b 233 SUPERFAMILY SSF46955 8 109 2.06E-12 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_8665 365c1a701ce6860df231b9417323f90b 233 Pfam PF13411 MerR HTH family regulatory protein 123 190 8.5E-15 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8665 365c1a701ce6860df231b9417323f90b 233 ProSitePatterns PS00552 MerR-type HTH domain signature. 125 147 - T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8665 365c1a701ce6860df231b9417323f90b 233 SUPERFAMILY SSF46955 122 228 4.21E-17 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_8665 365c1a701ce6860df231b9417323f90b 233 Gene3D G3DSA:1.10.1660.10 8 110 4.2E-15 T 19-04-2016 AMED_8665 365c1a701ce6860df231b9417323f90b 233 Gene3D G3DSA:1.10.1660.10 123 228 1.8E-19 T 19-04-2016 AMED_8665 365c1a701ce6860df231b9417323f90b 233 Pfam PF00376 MerR family regulatory protein 8 43 3.8E-12 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8665 365c1a701ce6860df231b9417323f90b 233 PANTHER PTHR30204 114 229 1.4E-17 T 19-04-2016 AMED_8665 365c1a701ce6860df231b9417323f90b 233 SMART SM00422 122 191 6.2E-9 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8665 365c1a701ce6860df231b9417323f90b 233 SMART SM00422 5 76 0.002 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_7537 fe28077f226af7401fdc6c06d77ae9bd 224 Pfam PF13578 Methyltransferase domain 31 142 2.2E-17 T 19-04-2016 AMED_7537 fe28077f226af7401fdc6c06d77ae9bd 224 Gene3D G3DSA:3.40.50.150 14 144 1.7E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7537 fe28077f226af7401fdc6c06d77ae9bd 224 SUPERFAMILY SSF53335 8 145 1.81E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1505 3f6c9000b131170382111e791871f0e9 390 Gene3D G3DSA:3.40.50.2000 229 372 9.8E-34 T 19-04-2016 AMED_1505 3f6c9000b131170382111e791871f0e9 390 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 15 388 2.7E-108 T 19-04-2016 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 AMED_1505 3f6c9000b131170382111e791871f0e9 390 Gene3D G3DSA:3.40.50.2000 5 228 7.7E-11 T 19-04-2016 AMED_1505 3f6c9000b131170382111e791871f0e9 390 PANTHER PTHR11926 1 373 1.2E-41 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_1505 3f6c9000b131170382111e791871f0e9 390 PANTHER PTHR11926:SF16 1 373 1.2E-41 T 19-04-2016 AMED_1505 3f6c9000b131170382111e791871f0e9 390 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 219 356 5.5E-13 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_1505 3f6c9000b131170382111e791871f0e9 390 SUPERFAMILY SSF53756 5 389 3.14E-75 T 19-04-2016 AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 SUPERFAMILY SSF52540 4 233 1.38E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 SMART SM00382 283 477 4.5E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 SMART SM00382 32 232 5.7E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 PANTHER PTHR24220:SF416 9 383 5.7E-135 T 19-04-2016 AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 Gene3D G3DSA:3.40.50.300 5 235 1.3E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 Pfam PF00005 ABC transporter 276 428 2.8E-21 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 Pfam PF00005 ABC transporter 23 176 5.6E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 SUPERFAMILY SSF52540 274 487 1.81E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 Gene3D G3DSA:3.40.50.300 273 490 2.7E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1515 2a24ab52aca6656b780a0dbbbcb4eab2 512 PANTHER PTHR24220 9 383 5.7E-135 T 19-04-2016 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 36 1.8E-11 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 SMART SM00354 1 59 3.3E-13 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 Gene3D G3DSA:1.10.260.40 1 41 3.2E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 Pfam PF13377 Periplasmic binding protein-like domain 161 322 3.8E-35 T 19-04-2016 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 Gene3D G3DSA:3.40.50.2300 166 302 3.9E-46 T 19-04-2016 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 PANTHER PTHR30146 1 322 2.4E-85 T 19-04-2016 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 PANTHER PTHR30146:SF48 1 322 2.4E-85 T 19-04-2016 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 Gene3D G3DSA:3.40.50.2300 42 165 6.4E-26 T 19-04-2016 AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 SUPERFAMILY SSF53822 62 321 6.16E-54 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5194 d4e4159a7a1b83e6f70720dcb96b60e4 322 SUPERFAMILY SSF47413 1 47 7.03E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4931 37b8578747faecfcda67faab5c8da235 258 PANTHER PTHR30204:SF27 1 106 7.8E-28 T 19-04-2016 AMED_4931 37b8578747faecfcda67faab5c8da235 258 Pfam PF07739 TipAS antibiotic-recognition domain 137 246 4.3E-18 T 19-04-2016 IPR012925 TipAS antibiotic-recognition domain AMED_4931 37b8578747faecfcda67faab5c8da235 258 Pfam PF00376 MerR family regulatory protein 4 41 1.5E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4931 37b8578747faecfcda67faab5c8da235 258 Gene3D G3DSA:1.10.490.50 162 249 2.3E-15 T 19-04-2016 IPR012925 TipAS antibiotic-recognition domain AMED_4931 37b8578747faecfcda67faab5c8da235 258 SUPERFAMILY SSF89082 160 248 4.71E-14 T 19-04-2016 IPR012925 TipAS antibiotic-recognition domain AMED_4931 37b8578747faecfcda67faab5c8da235 258 Gene3D G3DSA:1.10.1660.10 3 108 4.8E-27 T 19-04-2016 AMED_4931 37b8578747faecfcda67faab5c8da235 258 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4931 37b8578747faecfcda67faab5c8da235 258 SUPERFAMILY SSF46955 3 107 5.86E-26 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4931 37b8578747faecfcda67faab5c8da235 258 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 5.8E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4931 37b8578747faecfcda67faab5c8da235 258 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 5.8E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4931 37b8578747faecfcda67faab5c8da235 258 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 5.8E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4931 37b8578747faecfcda67faab5c8da235 258 PANTHER PTHR30204 1 106 7.8E-28 T 19-04-2016 AMED_4931 37b8578747faecfcda67faab5c8da235 258 Pfam PF09278 MerR, DNA binding 48 100 8.6E-6 T 19-04-2016 IPR015358 Transcription regulator MerR, DNA binding AMED_4931 37b8578747faecfcda67faab5c8da235 258 SMART SM00422 3 72 2.0E-22 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 284 363 3.0E-13 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 SUPERFAMILY SSF142984 210 258 5.75E-8 T 19-04-2016 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 SUPERFAMILY SSF140490 279 371 6.41E-13 T 19-04-2016 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 PANTHER PTHR11780 31 372 3.5E-50 T 19-04-2016 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 39 193 4.0E-34 T 19-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 PANTHER PTHR11780:SF7 31 372 3.5E-50 T 19-04-2016 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 Pfam PF10531 SLBB domain 210 251 9.4E-11 T 19-04-2016 IPR019554 Soluble ligand binding domain AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 Gene3D G3DSA:3.10.560.10 204 240 6.7E-6 T 19-04-2016 AMED_5939 905e05a57757cc8cf29fbd2a04281acd 376 SUPERFAMILY SSF142019 9 206 8.76E-43 T 19-04-2016 AMED_4078 88ec1a7a4cf2b8316fb300db511aa227 366 PANTHER PTHR10859:SF75 24 243 1.8E-28 T 19-04-2016 AMED_4078 88ec1a7a4cf2b8316fb300db511aa227 366 PANTHER PTHR10859 24 243 1.8E-28 T 19-04-2016 AMED_4078 88ec1a7a4cf2b8316fb300db511aa227 366 SUPERFAMILY SSF53448 43 252 2.11E-31 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4078 88ec1a7a4cf2b8316fb300db511aa227 366 Pfam PF13641 Glycosyltransferase like family 2 44 254 8.2E-18 T 19-04-2016 AMED_4078 88ec1a7a4cf2b8316fb300db511aa227 366 Gene3D G3DSA:3.90.550.10 44 250 5.3E-24 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 Pfam PF00391 PEP-utilising enzyme, mobile domain 158 227 1.4E-21 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 188 199 - T 19-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 SUPERFAMILY SSF47831 40 147 1.11E-18 T 19-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 Gene3D G3DSA:3.20.20.60 253 545 5.0E-90 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 Gene3D G3DSA:3.50.30.10 137 241 7.8E-31 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 429 447 - T 19-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 SUPERFAMILY SSF51621 252 531 6.28E-87 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 429 444 4.4E-18 T 19-04-2016 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 285 304 4.4E-18 T 19-04-2016 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 446 461 4.4E-18 T 19-04-2016 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 482 494 4.4E-18 T 19-04-2016 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 Pfam PF05524 PEP-utilising enzyme, N-terminal 13 130 9.7E-20 T 19-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 PIRSF PIRSF000732 7 549 5.3E-148 T 19-04-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 PANTHER PTHR22931 66 532 8.2E-128 T 19-04-2016 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 SUPERFAMILY SSF52009 129 232 1.96E-27 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 254 520 6.1E-80 T 19-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 Gene3D G3DSA:1.10.274.10 40 136 6.8E-19 T 19-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMED_9316 cb9c2e1b10f86271b23be3ad01e509b3 549 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 63 538 9.8E-111 T 19-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 Hamap MF_01974 Methionine aminopeptidase [map]. 39 285 39.869 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 227 239 8.1E-21 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 104 117 8.1E-21 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 8.1E-21 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 PRINTS PR00599 Methionine aminopeptidase-1 signature 126 142 8.1E-21 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 PANTHER PTHR10804 10 283 1.6E-137 T 19-04-2016 AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 42 283 7.4E-89 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 202 220 - T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 PANTHER PTHR10804:SF82 10 283 1.6E-137 T 19-04-2016 AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 SUPERFAMILY SSF55920 7 284 9.94E-86 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 Gene3D G3DSA:3.90.230.10 41 284 4.2E-95 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_2046 053806a522b7f36d4e4e276ac9feb4d3 285 Pfam PF00557 Metallopeptidase family M24 48 276 1.4E-51 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_6779 801c382e339466d7687cb1305709e99b 394 SUPERFAMILY SSF103473 4 375 1.96E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6779 801c382e339466d7687cb1305709e99b 394 PRINTS PR01035 Tetracycline resistance protein signature 10 26 8.8E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_6779 801c382e339466d7687cb1305709e99b 394 PRINTS PR01035 Tetracycline resistance protein signature 133 155 8.8E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_6779 801c382e339466d7687cb1305709e99b 394 PRINTS PR01035 Tetracycline resistance protein signature 40 59 8.8E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_6779 801c382e339466d7687cb1305709e99b 394 PANTHER PTHR23501 1 386 7.3E-167 T 19-04-2016 AMED_6779 801c382e339466d7687cb1305709e99b 394 PANTHER PTHR23501:SF4 1 386 7.3E-167 T 19-04-2016 AMED_6779 801c382e339466d7687cb1305709e99b 394 Pfam PF07690 Major Facilitator Superfamily 8 328 3.6E-38 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6779 801c382e339466d7687cb1305709e99b 394 Gene3D G3DSA:1.20.1250.20 5 183 2.2E-27 T 19-04-2016 AMED_6779 801c382e339466d7687cb1305709e99b 394 Gene3D G3DSA:1.20.1250.20 197 373 1.5E-12 T 19-04-2016 AMED_1517 3d0e1ccecdd80eef01b9faa6b3affe13 380 PANTHER PTHR33393:SF2 53 295 1.2E-44 T 19-04-2016 AMED_1517 3d0e1ccecdd80eef01b9faa6b3affe13 380 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 55 296 3.8E-70 T 19-04-2016 IPR019079 Capsule synthesis protein, CapA AMED_1517 3d0e1ccecdd80eef01b9faa6b3affe13 380 Gene3D G3DSA:3.60.21.10 96 365 2.3E-26 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1517 3d0e1ccecdd80eef01b9faa6b3affe13 380 SMART SM00854 54 298 2.2E-77 T 19-04-2016 IPR019079 Capsule synthesis protein, CapA AMED_1517 3d0e1ccecdd80eef01b9faa6b3affe13 380 PANTHER PTHR33393 53 295 1.2E-44 T 19-04-2016 AMED_1517 3d0e1ccecdd80eef01b9faa6b3affe13 380 SUPERFAMILY SSF56300 54 330 2.47E-37 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 SUPERFAMILY SSF51971 364 409 1.12E-40 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 SUPERFAMILY SSF51971 115 317 1.12E-40 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.30.70.20 8 67 1.0E-13 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 117 268 3.6E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 PANTHER PTHR11938 1 481 9.5E-126 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 PRINTS PR00419 Adrenodoxin reductase family signature 141 154 1.5E-14 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 PRINTS PR00419 Adrenodoxin reductase family signature 117 139 1.5E-14 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 PRINTS PR00419 Adrenodoxin reductase family signature 251 265 1.5E-14 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.50.50.60 202 408 5.3E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 Pfam PF00037 4Fe-4S binding domain 40 61 1.5E-7 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 SUPERFAMILY SSF54862 8 71 2.88E-15 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 PANTHER PTHR11938:SF4 1 481 9.5E-126 T 19-04-2016 AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 46 57 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.40.50.720 409 479 2.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3400 a2defd2db2403b56e6d6e7ab2decd85f 489 Gene3D G3DSA:3.40.50.720 115 201 2.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 SUPERFAMILY SSF117457 365 539 4.18E-60 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 ProSitePatterns PS00163 Fumarate lyases signature. 460 469 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 Gene3D G3DSA:3.20.130.10 355 540 4.5E-72 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 377 540 1.1E-56 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 Pfam PF05681 Fumarate hydratase (Fumerase) 51 330 4.1E-82 T 19-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 PANTHER PTHR30389 2 539 0.0 T 19-04-2016 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 Pfam PF05683 Fumarase C-terminus 336 541 4.9E-92 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 PIRSF PIRSF001394 31 549 5.0E-213 T 19-04-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2567 826b9c4313f69cb1a933ab402af608f4 552 PANTHER PTHR30389:SF0 2 539 0.0 T 19-04-2016 AMED_3535 d34762c06b43c3338d854ce771e29703 375 Pfam PF01594 Domain of unknown function DUF20 55 366 9.4E-61 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_3535 d34762c06b43c3338d854ce771e29703 375 PANTHER PTHR21716 44 375 3.3E-53 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 Gene3D G3DSA:3.40.50.1110 27 219 1.4E-32 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 SUPERFAMILY SSF52266 26 218 3.38E-31 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 Gene3D G3DSA:2.60.40.290 235 326 7.6E-28 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 207 5.4E-18 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 SMART SM00637 236 329 2.5E-31 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 PANTHER PTHR30383:SF9 32 220 4.7E-37 T 19-04-2016 AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 Pfam PF00553 Cellulose binding domain 236 323 2.9E-21 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 PANTHER PTHR30383 32 220 4.7E-37 T 19-04-2016 AMED_3288 e986cdfc4c55dfb9a49b3b77b7164db2 332 SUPERFAMILY SSF49384 230 327 8.37E-27 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 510 528 - T 19-04-2016 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 Gene3D G3DSA:3.90.120.10 416 518 2.7E-9 T 19-04-2016 AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 Gene3D G3DSA:3.40.50.150 3 198 1.6E-18 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 Pfam PF00145 C-5 cytosine-specific DNA methylase 9 192 1.8E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 SUPERFAMILY SSF53335 6 210 4.15E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 SUPERFAMILY SSF53335 429 531 4.15E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0354 bcaa4ac0ea7c701f492bec0d2624ed7e 541 SUPERFAMILY SSF53335 266 319 4.15E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0919 1a7514d530636cc6bdf033afd048e642 140 Gene3D G3DSA:3.10.490.10 1 139 1.1E-42 T 19-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like AMED_0919 1a7514d530636cc6bdf033afd048e642 140 SUPERFAMILY SSF110857 5 109 9.55E-12 T 19-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like AMED_0919 1a7514d530636cc6bdf033afd048e642 140 Pfam PF13772 AIG2-like family 49 130 1.6E-22 T 19-04-2016 AMED_0919 1a7514d530636cc6bdf033afd048e642 140 PANTHER PTHR12935 1 135 3.9E-39 T 19-04-2016 IPR017939 Gamma-glutamylcyclotransferase GO:0003839|GO:0006750 KEGG: 00480+2.3.2.4|MetaCyc: PWY-4041 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PIRSF PIRSF000350 1 448 3.1E-50 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 124 142 1.4E-13 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 263 1.4E-13 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 1.4E-13 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 1.4E-13 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PANTHER PTHR22912 1 452 2.3E-153 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 Gene3D G3DSA:3.50.50.60 1 130 4.3E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PANTHER PTHR22912:SF166 1 452 2.3E-153 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 343 445 3.7E-14 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 Gene3D G3DSA:3.50.50.60 131 318 4.0E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 Gene3D G3DSA:3.30.390.30 338 451 1.3E-21 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 SUPERFAMILY SSF55424 339 451 1.12E-20 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 301 2.8E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 127 136 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 248 262 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 339 360 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 31 46 1.8E-41 T 19-04-2016 AMED_2095 c48866abfae1bd8a6de77fa2db243d79 454 SUPERFAMILY SSF51905 1 323 9.91E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 Pfam PF02515 CoA-transferase family III 6 371 8.5E-101 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 SUPERFAMILY SSF89796 2 378 5.89E-106 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 Gene3D G3DSA:3.40.50.10540 303 378 3.7E-93 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 Gene3D G3DSA:3.40.50.10540 3 215 3.7E-93 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 PANTHER PTHR24023 229 377 4.6E-29 T 19-04-2016 AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 PANTHER PTHR24023 84 213 4.6E-29 T 19-04-2016 AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 Gene3D G3DSA:3.30.1540.10 225 302 1.6E-14 T 19-04-2016 AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 PANTHER PTHR24023:SF593 229 377 4.6E-29 T 19-04-2016 AMED_6366 5811c6b1a300bdc5247a73687d3e792f 378 PANTHER PTHR24023:SF593 84 213 4.6E-29 T 19-04-2016 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 PANTHER PTHR11699:SF49 16 483 2.5E-238 T 19-04-2016 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 Gene3D G3DSA:3.40.605.10 16 273 7.6E-93 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 Gene3D G3DSA:3.40.309.10 274 458 2.1E-66 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 Pfam PF00171 Aldehyde dehydrogenase family 23 482 1.5E-163 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 SUPERFAMILY SSF53720 16 484 5.89E-162 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_7877 fc042fc5469f28ecd59e6840b3c57110 487 PANTHER PTHR11699 16 483 2.5E-238 T 19-04-2016 AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 PANTHER PTHR22925 21 319 4.5E-70 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 Gene3D G3DSA:2.80.10.50 336 465 2.2E-40 T 19-04-2016 AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 PANTHER PTHR22925:SF3 21 319 4.5E-70 T 19-04-2016 AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 SMART SM00458 331 468 7.5E-17 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 Gene3D G3DSA:2.115.10.20 9 248 1.4E-29 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 SUPERFAMILY SSF50370 333 465 1.91E-45 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 SUPERFAMILY SSF75005 38 313 1.71E-49 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 Pfam PF00652 Ricin-type beta-trefoil lectin domain 335 465 1.4E-23 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2373 aa10c224e2c7736cffd28621902f9cba 470 Pfam PF04616 Glycosyl hydrolases family 43 45 245 8.0E-20 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_6280 ab28251ef2837a91bb3443d90f325e9b 279 Pfam PF04012 PspA/IM30 family 3 241 2.7E-51 T 19-04-2016 IPR007157 PspA/IM30 AMED_3015 bafd9433bdc4911a760a207a4f62066b 305 Pfam PF01569 PAP2 superfamily 135 215 3.2E-12 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3015 bafd9433bdc4911a760a207a4f62066b 305 SUPERFAMILY SSF48317 45 216 2.62E-15 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3015 bafd9433bdc4911a760a207a4f62066b 305 SMART SM00014 104 212 0.0014 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3015 bafd9433bdc4911a760a207a4f62066b 305 Gene3D G3DSA:1.20.144.10 82 212 1.4E-10 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 PANTHER PTHR11085 4 246 1.2E-82 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 Pfam PF02146 Sir2 family 20 197 5.4E-43 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.40.50.1220 4 30 2.4E-43 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.40.50.1220 82 121 2.4E-43 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.40.50.1220 173 245 2.4E-43 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 SUPERFAMILY SSF52467 4 245 6.95E-73 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.30.1600.10 31 70 2.1E-21 T 19-04-2016 IPR026591 Sirtuin family, catalytic core small domain AMED_5937 43b02b0f26b158a8a7e06b8c422f25b0 247 Gene3D G3DSA:3.30.1600.10 122 166 2.1E-21 T 19-04-2016 IPR026591 Sirtuin family, catalytic core small domain AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 SUPERFAMILY SSF46894 138 216 1.43E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 SMART SM00421 153 210 1.9E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 Gene3D G3DSA:1.10.10.10 127 217 4.0E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 PANTHER PTHR26402:SF564 2 216 1.8E-93 T 19-04-2016 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 SMART SM00448 2 117 6.6E-35 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 Pfam PF00072 Response regulator receiver domain 4 117 1.4E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 PANTHER PTHR26402 2 216 1.8E-93 T 19-04-2016 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 210 3.0E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 Gene3D G3DSA:3.40.50.2300 1 126 3.7E-37 T 19-04-2016 AMED_0114 8dd1d115aa6927c5589ad6e3bf339639 222 SUPERFAMILY SSF52172 1 136 1.12E-34 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 Pfam PF00672 HAMP domain 138 206 1.0E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 2.6E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 2.6E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 2.6E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 SUPERFAMILY SSF55874 276 427 5.37E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 Gene3D G3DSA:1.10.287.130 213 273 1.0E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 427 3.0E-18 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 286 3.4E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 SMART SM00388 218 286 8.0E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 PANTHER PTHR24423 151 427 5.9E-64 T 19-04-2016 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 SUPERFAMILY SSF47384 206 286 1.77E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 Gene3D G3DSA:3.30.565.10 274 427 2.2E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 SMART SM00304 157 210 1.6E-4 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3582 2c9bafedae672fbe8021f93f105d6002 434 SMART SM00387 327 433 1.9E-28 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9247 a9824bc06de164cdf3e74dae1f0a34c1 271 Pfam PF08445 FR47-like protein 208 261 2.9E-7 T 19-04-2016 IPR013653 FR47-like GO:0016747 AMED_9247 a9824bc06de164cdf3e74dae1f0a34c1 271 SUPERFAMILY SSF55729 31 268 5.33E-18 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9247 a9824bc06de164cdf3e74dae1f0a34c1 271 Gene3D G3DSA:3.40.630.30 137 263 2.7E-15 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3049 589fdca4822740c06342177692ef61b0 396 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 206 392 2.1E-32 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3049 589fdca4822740c06342177692ef61b0 396 PANTHER PTHR21021:SF19 106 114 1.2E-23 T 19-04-2016 AMED_3049 589fdca4822740c06342177692ef61b0 396 PANTHER PTHR21021:SF19 151 393 1.2E-23 T 19-04-2016 AMED_3049 589fdca4822740c06342177692ef61b0 396 PANTHER PTHR21021 106 114 1.2E-23 T 19-04-2016 AMED_3049 589fdca4822740c06342177692ef61b0 396 PANTHER PTHR21021 151 393 1.2E-23 T 19-04-2016 AMED_3049 589fdca4822740c06342177692ef61b0 396 SUPERFAMILY SSF81606 193 346 4.18E-5 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3049 589fdca4822740c06342177692ef61b0 396 SMART SM00331 177 392 6.2E-17 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_1042 c680512a1710f0fe817d7b6a0861ad56 194 PANTHER PTHR31223 1 194 1.8E-89 T 19-04-2016 AMED_1042 c680512a1710f0fe817d7b6a0861ad56 194 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 3 179 3.6E-59 T 19-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMED_1042 c680512a1710f0fe817d7b6a0861ad56 194 Pfam PF03641 Possible lysine decarboxylase 46 174 6.3E-41 T 19-04-2016 IPR031100 LOG family AMED_1042 c680512a1710f0fe817d7b6a0861ad56 194 SUPERFAMILY SSF102405 1 179 7.48E-62 T 19-04-2016 AMED_1042 c680512a1710f0fe817d7b6a0861ad56 194 Gene3D G3DSA:3.40.50.450 2 183 3.8E-70 T 19-04-2016 AMED_1042 c680512a1710f0fe817d7b6a0861ad56 194 PANTHER PTHR31223:SF0 1 194 1.8E-89 T 19-04-2016 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 92 188 2.7E-11 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 Gene3D G3DSA:2.60.40.320 182 295 3.6E-10 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 SUPERFAMILY SSF49785 36 193 1.84E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 Gene3D G3DSA:2.60.120.260 39 181 8.8E-21 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 402 417 - T 19-04-2016 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 PANTHER PTHR10066 94 573 1.1E-73 T 19-04-2016 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 Gene3D G3DSA:3.20.20.80 301 576 2.3E-58 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 SUPERFAMILY SSF51445 302 576 1.14E-56 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 PANTHER PTHR10066:SF46 94 573 1.1E-73 T 19-04-2016 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 SUPERFAMILY SSF49303 228 295 4.03E-5 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 PRINTS PR00132 Glycosyl hydrolase family 2 signature 402 417 9.2E-8 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 PRINTS PR00132 Glycosyl hydrolase family 2 signature 306 320 9.2E-8 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 PRINTS PR00132 Glycosyl hydrolase family 2 signature 338 356 9.2E-8 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4537 3235a964b3684c0ad7bb08ab226d5fec 778 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 301 441 9.6E-24 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 1.0E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 Pfam PF07729 FCD domain 92 214 1.4E-16 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 SMART SM00895 92 215 1.0E-11 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 SMART SM00345 24 82 5.3E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 SUPERFAMILY SSF48008 88 222 1.6E-27 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 SUPERFAMILY SSF46785 17 86 1.57E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 Gene3D G3DSA:1.10.10.10 21 84 3.9E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 Gene3D G3DSA:1.20.120.530 86 224 2.4E-36 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7856 53c78b6409c562b927ec49f56ee68f24 237 PANTHER PTHR11751 22 108 4.3E-22 T 19-04-2016 AMED_2607 793488108bacb605ddd34627c2eddce1 167 TIGRFAM TIGR00576 dut: dUTP diphosphatase 7 145 5.6E-50 T 19-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 AMED_2607 793488108bacb605ddd34627c2eddce1 167 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 4 146 31.472 T 19-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 AMED_2607 793488108bacb605ddd34627c2eddce1 167 SUPERFAMILY SSF51283 2 145 6.41E-48 T 19-04-2016 IPR029054 dUTPase-like AMED_2607 793488108bacb605ddd34627c2eddce1 167 PANTHER PTHR11241:SF0 2 155 2.1E-52 T 19-04-2016 AMED_2607 793488108bacb605ddd34627c2eddce1 167 Pfam PF00692 dUTPase 16 145 1.3E-33 T 19-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 AMED_2607 793488108bacb605ddd34627c2eddce1 167 PANTHER PTHR11241 2 155 2.1E-52 T 19-04-2016 AMED_2607 793488108bacb605ddd34627c2eddce1 167 Gene3D G3DSA:2.70.40.10 3 145 4.1E-56 T 19-04-2016 IPR029054 dUTPase-like AMED_3635 8031e3438e867f31474489d9b2ebed4c 621 SUPERFAMILY SSF53067 143 228 9.32E-11 T 19-04-2016 AMED_3635 8031e3438e867f31474489d9b2ebed4c 621 SUPERFAMILY SSF53067 278 366 9.32E-11 T 19-04-2016 AMED_3635 8031e3438e867f31474489d9b2ebed4c 621 SUPERFAMILY SSF53067 42 101 9.32E-11 T 19-04-2016 AMED_3635 8031e3438e867f31474489d9b2ebed4c 621 PANTHER PTHR34847 30 594 2.7E-93 T 19-04-2016 AMED_3635 8031e3438e867f31474489d9b2ebed4c 621 Pfam PF16861 Carbamoyltransferase C-terminus 408 579 1.9E-60 T 19-04-2016 IPR031730 Carbamoyltransferase, C-terminal AMED_3635 8031e3438e867f31474489d9b2ebed4c 621 Pfam PF02543 Carbamoyltransferase N-terminus 41 363 9.6E-43 T 19-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 SUPERFAMILY SSF53067 282 523 1.39E-56 T 19-04-2016 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 PIRSF PIRSF000538 3 522 2.1E-59 T 19-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 289 477 5.0E-41 T 19-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 Gene3D G3DSA:3.30.420.40 3 276 2.3E-37 T 19-04-2016 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 SUPERFAMILY SSF53067 6 280 4.75E-33 T 19-04-2016 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 PANTHER PTHR10196 3 535 1.2E-184 T 19-04-2016 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 Gene3D G3DSA:3.30.420.40 282 519 4.5E-54 T 19-04-2016 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 276 8.3E-8 T 19-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 Hamap MF_00520 Ribulokinase [araB]. 3 534 45.666 T 19-04-2016 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16|UniPathway: UPA00145 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 PANTHER PTHR10196:SF59 3 535 1.2E-184 T 19-04-2016 AMED_4402 56184c70ac7de396ae85c7016ae78cd0 549 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 6 524 3.4E-237 T 19-04-2016 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16|UniPathway: UPA00145 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 SMART SM00342 211 294 1.9E-28 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 SUPERFAMILY SSF46689 247 295 3.05E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 Gene3D G3DSA:1.10.10.60 249 296 5.3E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 Pfam PF12833 Helix-turn-helix domain 218 295 4.7E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 PANTHER PTHR11019:SF39 61 294 1.9E-26 T 19-04-2016 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 SUPERFAMILY SSF46689 194 244 2.87E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 Gene3D G3DSA:1.10.10.60 190 248 3.2E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3563 980f70e2dd8fd76d0accc22510f4e086 296 PANTHER PTHR11019 61 294 1.9E-26 T 19-04-2016 AMED_4040 14001a18440683617f50cbfdb16f47e1 345 Gene3D G3DSA:3.30.1780.10 10 153 1.9E-43 T 19-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal AMED_4040 14001a18440683617f50cbfdb16f47e1 345 PANTHER PTHR13812:SF19 8 337 7.7E-37 T 19-04-2016 AMED_4040 14001a18440683617f50cbfdb16f47e1 345 PIRSF PIRSF001439 4 333 6.5E-78 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_4040 14001a18440683617f50cbfdb16f47e1 345 SUPERFAMILY SSF51735 10 327 6.13E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4040 14001a18440683617f50cbfdb16f47e1 345 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 28 324 1.2E-36 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_4040 14001a18440683617f50cbfdb16f47e1 345 TIGRFAM TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB 11 335 1.4E-129 T 19-04-2016 IPR023866 2,3-diaminopropionate biosynthesis protein SbnB AMED_4040 14001a18440683617f50cbfdb16f47e1 345 PANTHER PTHR13812 8 337 7.7E-37 T 19-04-2016 AMED_4040 14001a18440683617f50cbfdb16f47e1 345 Gene3D G3DSA:3.40.50.720 154 297 8.0E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 PANTHER PTHR31964:SF42 142 298 1.1E-30 T 19-04-2016 AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 PRINTS PR01438 Universal stress protein signature 157 175 8.8E-19 T 19-04-2016 IPR006015 Universal stress protein A AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 PRINTS PR01438 Universal stress protein signature 274 296 8.8E-19 T 19-04-2016 IPR006015 Universal stress protein A AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 PRINTS PR01438 Universal stress protein signature 256 268 8.8E-19 T 19-04-2016 IPR006015 Universal stress protein A AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 SUPERFAMILY SSF52402 159 298 1.0E-34 T 19-04-2016 AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 Pfam PF00582 Universal stress protein family 7 146 1.2E-22 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 Pfam PF00582 Universal stress protein family 160 296 4.9E-27 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 PANTHER PTHR31964 142 298 1.1E-30 T 19-04-2016 AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 Gene3D G3DSA:3.40.50.620 7 149 1.4E-28 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 Gene3D G3DSA:3.40.50.620 153 296 7.9E-39 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5478 99fe87042b5e2f50821ed67c831390ac 301 SUPERFAMILY SSF52402 7 149 1.26E-27 T 19-04-2016 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 PANTHER PTHR18919:SF71 1 383 4.8E-202 T 19-04-2016 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 381 2.9E-125 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 ProSitePatterns PS00737 Thiolases signature 2. 329 345 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 Pfam PF00108 Thiolase, N-terminal domain 6 252 1.3E-57 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 Gene3D G3DSA:3.40.47.10 194 266 3.0E-62 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 Gene3D G3DSA:3.40.47.10 4 124 3.0E-62 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 Pfam PF02803 Thiolase, C-terminal domain 261 382 6.3E-42 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 SUPERFAMILY SSF53901 4 260 1.59E-71 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 Gene3D G3DSA:3.40.47.10 267 382 9.6E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 Gene3D G3DSA:3.40.47.10 155 193 9.6E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 PIRSF PIRSF000429 2 383 6.3E-122 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 PANTHER PTHR18919 1 383 4.8E-202 T 19-04-2016 AMED_3382 69c56bf669a0be7873848a9a948d4b3b 383 SUPERFAMILY SSF53901 261 382 1.73E-41 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 Pfam PF08281 Sigma-70, region 4 149 201 4.5E-18 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 Gene3D G3DSA:1.10.10.10 147 206 4.1E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 Pfam PF04542 Sigma-70 region 2 56 122 2.1E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 53 207 1.5E-46 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 SUPERFAMILY SSF88946 52 128 5.1E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 Gene3D G3DSA:1.10.1740.10 52 123 4.8E-15 T 19-04-2016 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 PANTHER PTHR30173 53 207 1.6E-34 T 19-04-2016 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 53 205 2.1E-25 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9119 d401fb561e785e1ecb9d821f016d710f 209 SUPERFAMILY SSF88659 135 206 2.8E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2148 158f6fb1252239135d27b498d4e86418 541 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 319 534 1.0E-30 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_2148 158f6fb1252239135d27b498d4e86418 541 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 32 289 4.7E-46 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_2148 158f6fb1252239135d27b498d4e86418 541 Gene3D G3DSA:3.40.50.1820 18 161 2.8E-65 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2148 158f6fb1252239135d27b498d4e86418 541 Gene3D G3DSA:3.40.50.1820 231 334 2.8E-65 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2148 158f6fb1252239135d27b498d4e86418 541 SMART SM00939 302 535 1.6E-56 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_2148 158f6fb1252239135d27b498d4e86418 541 PANTHER PTHR11731:SF151 227 322 1.3E-34 T 19-04-2016 AMED_2148 158f6fb1252239135d27b498d4e86418 541 PANTHER PTHR11731:SF151 1 188 1.3E-34 T 19-04-2016 AMED_2148 158f6fb1252239135d27b498d4e86418 541 Gene3D G3DSA:2.60.120.260 335 539 1.0E-60 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2148 158f6fb1252239135d27b498d4e86418 541 SUPERFAMILY SSF53474 21 337 1.68E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2148 158f6fb1252239135d27b498d4e86418 541 PANTHER PTHR11731 227 322 1.3E-34 T 19-04-2016 AMED_2148 158f6fb1252239135d27b498d4e86418 541 PANTHER PTHR11731 1 188 1.3E-34 T 19-04-2016 AMED_2148 158f6fb1252239135d27b498d4e86418 541 SUPERFAMILY SSF49785 331 538 3.19E-44 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2148 158f6fb1252239135d27b498d4e86418 541 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 28 539 6.7E-90 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 PANTHER PTHR10459:SF51 287 340 5.1E-119 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 PANTHER PTHR10459:SF51 1 264 5.1E-119 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 SUPERFAMILY SSF50249 200 337 2.34E-12 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Gene3D G3DSA:3.30.470.30 29 142 1.3E-27 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 24 32 - T 19-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 PANTHER PTHR10459 287 340 5.1E-119 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 PANTHER PTHR10459 1 264 5.1E-119 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 SUPERFAMILY SSF56091 2 197 1.34E-43 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Pfam PF04679 ATP dependent DNA ligase C terminal region 216 328 6.3E-13 T 19-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Pfam PF01068 ATP dependent DNA ligase domain 6 197 2.8E-37 T 19-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Gene3D G3DSA:3.30.1490.70 156 198 7.4E-11 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Gene3D G3DSA:3.30.1490.70 2 28 7.4E-11 T 19-04-2016 AMED_4148 0dff5392dd7dbb9dd69ae2c77bca23c5 354 Gene3D G3DSA:2.40.50.140 200 334 6.1E-12 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6309 b74c655e6ffd1a52deb55542edcb1b08 185 Gene3D G3DSA:3.40.630.30 2 176 2.1E-33 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6309 b74c655e6ffd1a52deb55542edcb1b08 185 Pfam PF00583 Acetyltransferase (GNAT) family 93 155 3.3E-6 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6309 b74c655e6ffd1a52deb55542edcb1b08 185 PANTHER PTHR23091 6 30 7.1E-12 T 19-04-2016 AMED_6309 b74c655e6ffd1a52deb55542edcb1b08 185 PANTHER PTHR23091 47 162 7.1E-12 T 19-04-2016 AMED_6309 b74c655e6ffd1a52deb55542edcb1b08 185 SUPERFAMILY SSF55729 2 166 6.67E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8133 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:1.10.530.10 257 337 6.5E-55 T 19-04-2016 AMED_8133 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:1.10.530.10 135 193 6.5E-55 T 19-04-2016 AMED_8133 47295f563c300d818f25bbb4ad915774 337 Gene3D G3DSA:3.30.20.10 202 256 7.8E-24 T 19-04-2016 AMED_8133 47295f563c300d818f25bbb4ad915774 337 SMART SM00495 21 65 1.4 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_8133 47295f563c300d818f25bbb4ad915774 337 SMART SM00495 76 120 1.3 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_8133 47295f563c300d818f25bbb4ad915774 337 Pfam PF00182 Chitinase class I 136 337 5.7E-41 T 19-04-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_8133 47295f563c300d818f25bbb4ad915774 337 SUPERFAMILY SSF53955 134 337 2.59E-66 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_8133 47295f563c300d818f25bbb4ad915774 337 PANTHER PTHR22595 121 337 1.4E-92 T 19-04-2016 AMED_1058 f18349b8f5c225d2f508f743784cd316 152 SUPERFAMILY SSF55961 6 144 3.74E-20 T 19-04-2016 AMED_1058 f18349b8f5c225d2f508f743784cd316 152 Gene3D G3DSA:3.30.530.20 7 144 2.0E-13 T 19-04-2016 IPR023393 START-like domain AMED_1058 f18349b8f5c225d2f508f743784cd316 152 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 7 141 2.3E-9 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 Gene3D G3DSA:1.25.10.10 112 330 6.4E-17 T 19-04-2016 IPR011989 Armadillo-like helical AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 SUPERFAMILY SSF48371 99 328 1.09E-16 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 Gene3D G3DSA:1.10.1660.10 3 101 8.4E-26 T 19-04-2016 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 SUPERFAMILY SSF46955 3 103 1.61E-23 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 Pfam PF13646 HEAT repeats 184 256 6.9E-10 T 19-04-2016 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 SMART SM00422 1 70 4.8E-20 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 PANTHER PTHR30204 3 104 3.6E-21 T 19-04-2016 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 Pfam PF13411 MerR HTH family regulatory protein 3 68 1.6E-15 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 9.6E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 9.6E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 9.6E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 SMART SM00567 E-Z type HEAT repeats 287 316 61.0 T 19-04-2016 IPR004155 PBS lyase HEAT-like repeat AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 SMART SM00567 E-Z type HEAT repeats 189 218 7.8 T 19-04-2016 IPR004155 PBS lyase HEAT-like repeat AMED_4809 3c124ba4f72f92a29f68b8e35e7f24e4 336 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8275 9879ff9eef9566c90518d4eac54025ee 113 SUPERFAMILY SSF46785 6 92 6.69E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8275 9879ff9eef9566c90518d4eac54025ee 113 Pfam PF12840 Helix-turn-helix domain 11 62 7.0E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8275 9879ff9eef9566c90518d4eac54025ee 113 Gene3D G3DSA:1.10.10.10 7 81 2.0E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8275 9879ff9eef9566c90518d4eac54025ee 113 SMART SM00418 11 87 2.1E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 592 611 1.9E-23 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 262 276 1.9E-23 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 549 1.9E-23 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 412 426 1.9E-23 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 627 1.9E-23 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:2.70.150.10 174 313 5.7E-29 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 592 608 5.4E-8 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 564 580 5.4E-8 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 623 648 5.4E-8 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Pfam PF00403 Heavy-metal-associated domain 14 71 2.0E-11 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF81665 641 670 8.5E-12 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF81665 313 406 8.5E-12 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF81665 162 216 8.5E-12 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Pfam PF00122 E1-E2 ATPase 184 403 2.6E-64 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.40.1110.10 431 519 5.6E-13 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 ProSitePatterns PS01047 Heavy-metal-associated domain. 16 44 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF55008 10 78 1.96E-18 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF81653 218 312 5.89E-26 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 171 695 2.0E-112 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Pfam PF00702 haloacid dehalogenase-like hydrolase 408 606 1.3E-40 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 187 672 1.3E-87 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 149 694 2.3E-166 T 19-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.40.50.1000 384 428 1.3E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.40.50.1000 520 660 1.3E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 414 420 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 ProSitePatterns PS01229 Hypothetical cof family signature 2. 592 614 - T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 PANTHER PTHR24093 10 698 1.2E-226 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 131 695 7.0E-157 T 19-04-2016 AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF56784 410 430 1.04E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 SUPERFAMILY SSF56784 462 692 1.04E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_6897 355601828e2bf4ec91dea4f04e7bde77 698 Gene3D G3DSA:3.30.70.100 12 76 6.2E-22 T 19-04-2016 AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 PANTHER PTHR30055:SF87 2 185 5.5E-47 T 19-04-2016 AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 SUPERFAMILY SSF48498 78 184 1.11E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 PANTHER PTHR30055 2 185 5.5E-47 T 19-04-2016 AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 Gene3D G3DSA:1.10.357.10 59 185 3.3E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 56 1.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 Gene3D G3DSA:1.10.10.60 2 58 6.7E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5680 150b4c9732cbed3026e30c3a88f12316 207 SUPERFAMILY SSF46689 3 73 2.24E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8872 c00f42e59bbecfb63fade1a3a8bfc9eb 182 Gene3D G3DSA:3.40.50.360 1 178 1.8E-45 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_8872 c00f42e59bbecfb63fade1a3a8bfc9eb 182 Pfam PF03358 NADPH-dependent FMN reductase 1 138 2.2E-24 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_8872 c00f42e59bbecfb63fade1a3a8bfc9eb 182 PANTHER PTHR30543 1 181 2.3E-20 T 19-04-2016 AMED_8872 c00f42e59bbecfb63fade1a3a8bfc9eb 182 SUPERFAMILY SSF52218 1 176 5.2E-33 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 244 404 5.1E-22 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709 73 127 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 Pfam PF07731 Multicopper oxidase 497 622 3.3E-24 T 19-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 SUPERFAMILY SSF49503 57 243 4.39E-21 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709:SF2 170 419 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709:SF2 449 538 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 ProSitePatterns PS00079 Multicopper oxidases signature 1. 597 617 - T 19-04-2016 IPR033138 Multicopper oxidases, conserved site AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 SUPERFAMILY SSF49503 247 383 6.84E-12 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709:SF2 73 127 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709:SF2 563 619 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 498 622 1.5E-30 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 66 131 9.9E-23 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 Gene3D G3DSA:2.60.40.420 176 243 9.9E-23 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 ProSitePatterns PS00080 Multicopper oxidases signature 2. 602 613 - T 19-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709 170 419 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709 449 538 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 PANTHER PTHR11709 563 619 5.1E-83 T 19-04-2016 AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 SUPERFAMILY SSF49503 497 621 1.53E-24 T 19-04-2016 IPR008972 Cupredoxin AMED_6380 eeedbe066747655ced2e98ff3f5b443a 645 Pfam PF07732 Multicopper oxidase 174 241 1.9E-7 T 19-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 PANTHER PTHR30146:SF34 20 350 2.0E-136 T 19-04-2016 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 Pfam PF13377 Periplasmic binding protein-like domain 189 346 1.3E-36 T 19-04-2016 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 SMART SM00354 21 91 4.1E-27 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 PANTHER PTHR30146 20 350 2.0E-136 T 19-04-2016 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 Gene3D G3DSA:3.40.50.2300 74 194 5.7E-25 T 19-04-2016 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 Gene3D G3DSA:3.40.50.2300 195 326 1.3E-47 T 19-04-2016 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 SUPERFAMILY SSF53822 80 350 5.89E-59 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_7488 ac0c48ef62f4098480737a3541acca57 351 SUPERFAMILY SSF47413 22 77 6.44E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 Pfam PF00356 Bacterial regulatory proteins, lacI family 24 68 1.7E-18 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_7488 ac0c48ef62f4098480737a3541acca57 351 Gene3D G3DSA:1.10.260.40 23 73 9.4E-25 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6893 a17b925b65c0e5f13e3a0ce2ee393121 224 SUPERFAMILY SSF109854 7 123 3.97E-9 T 19-04-2016 AMED_6893 a17b925b65c0e5f13e3a0ce2ee393121 224 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 20 189 2.4E-16 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 SUPERFAMILY SSF100939 2 257 8.44E-48 T 19-04-2016 IPR016194 SPOC-like, C-terminal domain AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 Gene3D G3DSA:2.40.290.10 4 147 1.0E-13 T 19-04-2016 IPR016194 SPOC-like, C-terminal domain AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 PANTHER PTHR41251:SF1 2 306 5.2E-70 T 19-04-2016 AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 PIRSF PIRSF006493 1 306 3.6E-93 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 Pfam PF02735 Ku70/Ku80 beta-barrel domain 13 193 4.0E-34 T 19-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 SMART SM00559 53 182 3.3E-29 T 19-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 TIGRFAM TIGR02772 Ku_bact: Ku protein 2 259 8.5E-85 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 256 31.893 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_5205 fa99f4464fe7fc288ec45177327aa6b8 310 PANTHER PTHR41251 2 306 5.2E-70 T 19-04-2016 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 PRINTS PR00474 Glutamate 5-kinase family signature 205 225 4.4E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 4.4E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 PRINTS PR00474 Glutamate 5-kinase family signature 153 180 4.4E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 Pfam PF00696 Amino acid kinase family 3 231 4.4E-54 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 SUPERFAMILY SSF53633 4 244 7.99E-73 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 Pfam PF01842 ACT domain 269 329 5.4E-9 T 19-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 SUPERFAMILY SSF55021 333 409 3.36E-22 T 19-04-2016 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 407 1.9E-122 T 19-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 PIRSF PIRSF000726 57 414 4.4E-129 T 19-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 Gene3D G3DSA:3.40.1160.10 3 245 4.3E-73 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 PANTHER PTHR21499:SF27 3 417 1.5E-166 T 19-04-2016 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 Pfam PF13840 ACT domain 341 403 2.7E-14 T 19-04-2016 IPR027795 GATS-like ACT domain AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 19-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 406 7.5E-116 T 19-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 SUPERFAMILY SSF55021 251 330 2.78E-17 T 19-04-2016 AMED_8883 c4a67034848d3cd2a49cc90b007356af 421 PANTHER PTHR21499 3 417 1.5E-166 T 19-04-2016 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 SMART SM00342 195 278 5.1E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 Gene3D G3DSA:1.10.10.60 233 276 6.4E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 PANTHER PTHR11019:SF81 20 286 1.1E-69 T 19-04-2016 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 SUPERFAMILY SSF46689 180 229 3.67E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 232 274 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 Pfam PF06719 AraC-type transcriptional regulator N-terminus 21 166 6.1E-44 T 19-04-2016 IPR009594 Transcription regulator HTH, AraC, N-terminal AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 Pfam PF12833 Helix-turn-helix domain 201 276 2.3E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 PANTHER PTHR11019 20 286 1.1E-69 T 19-04-2016 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 Gene3D G3DSA:1.10.10.60 178 232 1.3E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7697 33831e84b895548eefb3fe5875ea28e6 292 SUPERFAMILY SSF46689 231 280 9.41E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7450 4eda4429299546b117633f9de8b6d159 763 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 139 596 2.4E-138 T 19-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AMED_7450 4eda4429299546b117633f9de8b6d159 763 SUPERFAMILY SSF53383 139 612 7.96E-95 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7450 4eda4429299546b117633f9de8b6d159 763 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 621 749 1.8E-41 T 19-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AMED_7450 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.40.640.10 139 447 8.1E-95 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PANTHER PTHR11751:SF406 558 681 2.0E-112 T 19-04-2016 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PIRSF PIRSF009393 13 763 1.5E-235 T 19-04-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PANTHER PTHR11751:SF406 533 541 2.0E-112 T 19-04-2016 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PANTHER PTHR11751:SF406 140 490 2.0E-112 T 19-04-2016 AMED_7450 4eda4429299546b117633f9de8b6d159 763 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 383 397 - T 19-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PANTHER PTHR11751 140 490 2.0E-112 T 19-04-2016 AMED_7450 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.90.1150.10 451 638 5.5E-62 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PANTHER PTHR11751 558 681 2.0E-112 T 19-04-2016 AMED_7450 4eda4429299546b117633f9de8b6d159 763 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 21 133 2.8E-19 T 19-04-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AMED_7450 4eda4429299546b117633f9de8b6d159 763 Gene3D G3DSA:3.90.100.10 639 760 4.6E-26 T 19-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AMED_7450 4eda4429299546b117633f9de8b6d159 763 PANTHER PTHR11751 533 541 2.0E-112 T 19-04-2016 AMED_7450 4eda4429299546b117633f9de8b6d159 763 SUPERFAMILY SSF55904 617 758 5.23E-29 T 19-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 Gene3D G3DSA:1.10.8.300 214 319 1.3E-35 T 19-04-2016 AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 PANTHER PTHR11603:SF148 6 323 8.2E-140 T 19-04-2016 AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 Gene3D G3DSA:3.40.50.300 27 191 3.8E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 PIRSF PIRSF002849 1 323 1.3E-127 T 19-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 PANTHER PTHR11603 6 323 8.2E-140 T 19-04-2016 AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 45 175 1.3E-64 T 19-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMED_1142 6bfa58ca375f892d59e66bd07ca687a3 323 SUPERFAMILY SSF52540 12 299 8.46E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5247 5f50825fbabc64ae7addb14380bceff7 251 PANTHER PTHR30269 3 250 8.1E-46 T 19-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 AMED_5247 5f50825fbabc64ae7addb14380bceff7 251 Pfam PF01925 Sulfite exporter TauE/SafE 12 246 2.7E-30 T 19-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 AMED_5247 5f50825fbabc64ae7addb14380bceff7 251 PANTHER PTHR30269:SF10 3 250 8.1E-46 T 19-04-2016 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 SMART SM01232 123 216 4.0E-17 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 PANTHER PTHR22993:SF13 2 267 1.5E-68 T 19-04-2016 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 SUPERFAMILY SSF57716 221 262 1.03E-5 T 19-04-2016 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 Gene3D G3DSA:1.10.8.50 124 262 1.8E-28 T 19-04-2016 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 Gene3D G3DSA:3.20.190.10 2 123 1.4E-14 T 19-04-2016 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 SUPERFAMILY SSF81624 2 124 8.9E-24 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 SMART SM00898 2 112 1.4E-17 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 123 198 1.0E-8 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 103 1.7E-7 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 SUPERFAMILY SSF46946 122 190 5.0E-15 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_6274 d414db8b180fcaf8e1ac185a8dde8e43 269 PANTHER PTHR22993 2 267 1.5E-68 T 19-04-2016 AMED_5580 131872580d5341c25c0a041142c7040c 245 Gene3D G3DSA:1.10.10.10 188 231 1.7E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5580 131872580d5341c25c0a041142c7040c 245 Pfam PF13185 GAF domain 25 161 1.0E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5580 131872580d5341c25c0a041142c7040c 245 Pfam PF03861 ANTAR domain 189 230 5.4E-7 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5580 131872580d5341c25c0a041142c7040c 245 SMART SM01012 152 230 1.3E-5 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5580 131872580d5341c25c0a041142c7040c 245 Gene3D G3DSA:3.30.450.40 27 162 1.7E-8 T 19-04-2016 IPR029016 GAF domain-like AMED_5580 131872580d5341c25c0a041142c7040c 245 SUPERFAMILY SSF55781 26 164 4.42E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_8189 b8d12ba73b0ef4b059cf6ded6f4abc56 497 Gene3D G3DSA:3.40.50.1820 23 492 3.1E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8189 b8d12ba73b0ef4b059cf6ded6f4abc56 497 Pfam PF00450 Serine carboxypeptidase 82 455 1.5E-9 T 19-04-2016 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 AMED_8189 b8d12ba73b0ef4b059cf6ded6f4abc56 497 PANTHER PTHR11802 83 260 2.4E-15 T 19-04-2016 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 AMED_8189 b8d12ba73b0ef4b059cf6ded6f4abc56 497 SUPERFAMILY SSF53474 32 482 7.89E-68 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7205 9cd7d3fbabf72b0d96ca849bd088d700 335 PANTHER PTHR11941 142 331 1.3E-36 T 19-04-2016 AMED_7205 9cd7d3fbabf72b0d96ca849bd088d700 335 Pfam PF00378 Enoyl-CoA hydratase/isomerase 161 332 2.3E-27 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_7205 9cd7d3fbabf72b0d96ca849bd088d700 335 PANTHER PTHR11941:SF54 142 331 1.3E-36 T 19-04-2016 AMED_7205 9cd7d3fbabf72b0d96ca849bd088d700 335 SUPERFAMILY SSF52096 152 331 9.75E-47 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7205 9cd7d3fbabf72b0d96ca849bd088d700 335 Gene3D G3DSA:3.90.226.10 148 331 9.8E-46 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 Gene3D G3DSA:3.40.50.300 3 227 8.7E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 PANTHER PTHR24220:SF523 9 252 2.3E-99 T 19-04-2016 AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 SMART SM00382 32 211 1.5E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 SUPERFAMILY SSF52540 4 228 2.57E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 PANTHER PTHR24220 9 252 2.3E-99 T 19-04-2016 AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7944 9d75a12146a82ef1a9f924f0e045e68a 351 Pfam PF00005 ABC transporter 24 162 1.9E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4325 b9192fda58847141d68b316a9afca54e 342 SUPERFAMILY SSF63380 103 207 1.53E-25 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_4325 b9192fda58847141d68b316a9afca54e 342 Pfam PF00175 Oxidoreductase NAD-binding domain 214 317 2.6E-22 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 83 1.6E-9 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4325 b9192fda58847141d68b316a9afca54e 342 Gene3D G3DSA:2.40.30.10 106 200 9.5E-26 T 19-04-2016 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PANTHER PTHR19370:SF32 31 337 9.7E-72 T 19-04-2016 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PANTHER PTHR19370 31 337 9.7E-72 T 19-04-2016 AMED_4325 b9192fda58847141d68b316a9afca54e 342 SUPERFAMILY SSF54292 4 102 1.97E-22 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4325 b9192fda58847141d68b316a9afca54e 342 Gene3D G3DSA:3.10.20.30 3 92 3.2E-22 T 19-04-2016 IPR012675 Beta-grasp domain AMED_4325 b9192fda58847141d68b316a9afca54e 342 Gene3D G3DSA:3.40.50.80 206 337 7.3E-42 T 19-04-2016 AMED_4325 b9192fda58847141d68b316a9afca54e 342 SUPERFAMILY SSF52343 193 334 7.99E-41 T 19-04-2016 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 247 2.4E-25 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 197 206 2.4E-25 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 304 312 2.4E-25 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 2.4E-25 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 2.4E-25 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 232 2.4E-25 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 238 247 4.5E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 250 261 4.5E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 4.5E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 312 4.5E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 213 232 4.5E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_4325 b9192fda58847141d68b316a9afca54e 342 Pfam PF00970 Oxidoreductase FAD-binding domain 111 202 2.2E-18 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_1402 aa8f9c07cc312c6012ee3853e4c89198 188 Gene3D G3DSA:1.10.357.10 2 180 3.0E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1402 aa8f9c07cc312c6012ee3853e4c89198 188 SUPERFAMILY SSF48498 81 151 4.89E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1402 aa8f9c07cc312c6012ee3853e4c89198 188 SUPERFAMILY SSF46689 2 70 9.48E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1402 aa8f9c07cc312c6012ee3853e4c89198 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 56 6.7E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 Gene3D G3DSA:1.10.260.40 21 88 2.4E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 PANTHER PTHR10245:SF9 1 203 3.2E-27 T 19-04-2016 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 Pfam PF13560 Helix-turn-helix domain 29 87 3.7E-12 T 19-04-2016 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 SMART SM00530 32 87 7.9E-15 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 Gene3D G3DSA:2.60.120.10 135 204 1.5E-11 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1998 08ee256ed73cc47d537aace654e4c703 211 SUPERFAMILY SSF47413 26 89 1.37E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 PANTHER PTHR10245 1 203 3.2E-27 T 19-04-2016 AMED_1998 08ee256ed73cc47d537aace654e4c703 211 SUPERFAMILY SSF51182 72 203 6.75E-16 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_1998 08ee256ed73cc47d537aace654e4c703 211 Pfam PF07883 Cupin domain 147 203 9.7E-9 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 PANTHER PTHR11699 12 468 1.3E-167 T 19-04-2016 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 PIRSF PIRSF036492 22 498 1.4E-99 T 19-04-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 SUPERFAMILY SSF53720 12 465 3.01E-137 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 270 281 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 Gene3D G3DSA:3.40.309.10 258 443 5.4E-58 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 Pfam PF00171 Aldehyde dehydrogenase family 12 463 9.4E-132 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_9053 7aa6138dfa0647f0614d52733d7d3706 498 Gene3D G3DSA:3.40.605.10 12 257 2.7E-77 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 SUPERFAMILY SSF46689 5 89 3.33E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 9.1E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 9.1E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.2E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 PANTHER PTHR30328 7 194 8.5E-32 T 19-04-2016 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 Gene3D G3DSA:1.10.357.10 4 197 5.2E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 61 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 SUPERFAMILY SSF48498 85 195 2.31E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7691 c8369be014f66594ec1f593e14b2bd09 199 PANTHER PTHR30328:SF28 7 194 8.5E-32 T 19-04-2016 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 Hamap MF_00519 L-arabinose isomerase [araA]. 1 474 62.289 T 19-04-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 PIRSF PIRSF001478 1 497 2.6E-226 T 19-04-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 8 302 2.0E-114 T 19-04-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 Pfam PF11762 L-arabinose isomerase C-terminal domain 360 473 1.1E-47 T 19-04-2016 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 PANTHER PTHR38464 2 497 1.6E-181 T 19-04-2016 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 SUPERFAMILY SSF50443 327 495 1.23E-68 T 19-04-2016 IPR004216 L-fucose/L-arabinose isomerase, C-terminal AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 PANTHER PTHR38464:SF1 2 497 1.6E-181 T 19-04-2016 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 Pfam PF02610 L-arabinose isomerase 6 357 2.2E-168 T 19-04-2016 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4|UniPathway: UPA00145 AMED_4404 37433412fc2beb6391079cbdbb26dd29 499 SUPERFAMILY SSF53743 1 323 3.66E-113 T 19-04-2016 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 SUPERFAMILY SSF46785 21 85 1.01E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 Pfam PF00480 ROK family 94 383 1.0E-26 T 19-04-2016 IPR000600 ROK family AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 Gene3D G3DSA:3.30.420.40 228 367 1.9E-24 T 19-04-2016 AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 SUPERFAMILY SSF53067 94 392 3.99E-34 T 19-04-2016 AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 PANTHER PTHR18964 68 394 2.0E-38 T 19-04-2016 AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 PANTHER PTHR18964:SF108 68 394 2.0E-38 T 19-04-2016 AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 Gene3D G3DSA:1.10.10.10 19 86 4.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4310 9a2d958b02722b0845cd91b9be85d823 405 Gene3D G3DSA:3.30.420.40 91 227 8.4E-23 T 19-04-2016 AMED_4860 cfeb73cc15c185c646a22188a21c2e28 230 SUPERFAMILY SSF52540 25 220 8.45E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4860 cfeb73cc15c185c646a22188a21c2e28 230 PANTHER PTHR24220 8 218 1.8E-55 T 19-04-2016 AMED_4860 cfeb73cc15c185c646a22188a21c2e28 230 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4860 cfeb73cc15c185c646a22188a21c2e28 230 Gene3D G3DSA:3.40.50.300 4 220 1.1E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4860 cfeb73cc15c185c646a22188a21c2e28 230 SMART SM00382 35 230 4.8E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4860 cfeb73cc15c185c646a22188a21c2e28 230 Pfam PF00005 ABC transporter 27 172 3.7E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PANTHER PTHR24322 12 137 2.2E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PANTHER PTHR24322 153 182 2.2E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 Gene3D G3DSA:3.40.50.720 4 239 2.3E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 2.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 2.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 SUPERFAMILY SSF51735 6 239 3.71E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5426 530912d0aeb536e7c9d04ae162aade51 239 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 239 2.3E-62 T 19-04-2016 AMED_0292 61e8d1e04c584f407e138dcb200bb91e 117 Pfam PF13466 STAS domain 26 105 1.9E-15 T 19-04-2016 IPR002645 STAS domain AMED_0292 61e8d1e04c584f407e138dcb200bb91e 117 Gene3D G3DSA:3.30.750.24 16 115 6.7E-23 T 19-04-2016 IPR002645 STAS domain AMED_0292 61e8d1e04c584f407e138dcb200bb91e 117 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 15 113 7.8E-19 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_0292 61e8d1e04c584f407e138dcb200bb91e 117 SUPERFAMILY SSF52091 15 114 9.03E-19 T 19-04-2016 IPR002645 STAS domain AMED_0292 61e8d1e04c584f407e138dcb200bb91e 117 PANTHER PTHR33495 1 111 2.1E-16 T 19-04-2016 AMED_0292 61e8d1e04c584f407e138dcb200bb91e 117 PANTHER PTHR33495:SF2 1 111 2.1E-16 T 19-04-2016 AMED_4940 71acff3c97ac787ea20d5dc572babe0f 255 PANTHER PTHR24322:SF317 12 189 1.5E-45 T 19-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMED_4940 71acff3c97ac787ea20d5dc572babe0f 255 PIRSF PIRSF000094 2 255 2.5E-86 T 19-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMED_4940 71acff3c97ac787ea20d5dc572babe0f 255 SUPERFAMILY SSF51735 6 252 7.36E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4940 71acff3c97ac787ea20d5dc572babe0f 255 Gene3D G3DSA:3.40.50.720 3 251 1.4E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4940 71acff3c97ac787ea20d5dc572babe0f 255 PANTHER PTHR24322 12 189 1.5E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4940 71acff3c97ac787ea20d5dc572babe0f 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 251 1.3E-68 T 19-04-2016 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Pfam PF02769 AIR synthase related protein, C-terminal domain 594 731 1.2E-17 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Pfam PF02769 AIR synthase related protein, C-terminal domain 215 374 3.0E-32 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 PANTHER PTHR10099 19 760 0.0 T 19-04-2016 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Gene3D G3DSA:3.30.1330.10 58 206 2.7E-50 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Gene3D G3DSA:3.30.1330.10 435 583 1.0E-51 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 PANTHER PTHR10099:SF2 19 760 0.0 T 19-04-2016 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 SUPERFAMILY SSF56042 593 759 9.12E-38 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 SUPERFAMILY SSF56042 214 447 7.63E-52 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Gene3D G3DSA:3.90.650.10 268 371 4.8E-4 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 PIRSF PIRSF001587 11 760 1.3E-277 T 19-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Pfam PF00586 AIR synthase related protein, N-terminal domain 100 201 2.5E-22 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Pfam PF00586 AIR synthase related protein, N-terminal domain 476 580 2.3E-21 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 760 302.458 T 19-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 SUPERFAMILY SSF55326 22 205 1.47E-48 T 19-04-2016 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 26 757 6.4E-248 T 19-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9047 1e1697fb911287ff57e4d14f671fed92 760 SUPERFAMILY SSF55326 417 587 9.29E-53 T 19-04-2016 AMED_2402 3c3ff735bf4ec5ed16b2995be199a22b 193 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 12 186 1.1E-44 T 19-04-2016 IPR017520 Conserved hypothetical protein CHP03086 AMED_2402 3c3ff735bf4ec5ed16b2995be199a22b 193 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 17 129 3.1E-14 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_2402 3c3ff735bf4ec5ed16b2995be199a22b 193 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 11 186 8.5E-23 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_2402 3c3ff735bf4ec5ed16b2995be199a22b 193 SUPERFAMILY SSF109854 6 135 8.97E-17 T 19-04-2016 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 SUPERFAMILY SSF46689 7 77 5.64E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 SUPERFAMILY SSF48498 122 198 3.37E-6 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_9072 f06baed0a14f38211a68c20134004fa8 204 Pfam PF13977 Bacterial transcriptional repressor 125 196 2.2E-6 T 19-04-2016 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 PANTHER PTHR30055 1 196 4.6E-28 T 19-04-2016 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 PANTHER PTHR30055:SF2 1 196 4.6E-28 T 19-04-2016 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.6E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.6E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9072 f06baed0a14f38211a68c20134004fa8 204 Gene3D G3DSA:1.10.357.10 10 196 1.4E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2830 3dcf2b8fd3563d1f85b3c58846aae67a 482 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 26 473 7.4E-221 T 19-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 AMED_2830 3dcf2b8fd3563d1f85b3c58846aae67a 482 SUPERFAMILY SSF101960 48 479 7.59E-141 T 19-04-2016 AMED_2830 3dcf2b8fd3563d1f85b3c58846aae67a 482 Pfam PF01458 Uncharacterized protein family (UPF0051) 228 453 1.1E-75 T 19-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AMED_2830 3dcf2b8fd3563d1f85b3c58846aae67a 482 PANTHER PTHR30508:SF1 2 482 2.9E-242 T 19-04-2016 AMED_2830 3dcf2b8fd3563d1f85b3c58846aae67a 482 PANTHER PTHR30508 2 482 2.9E-242 T 19-04-2016 AMED_3559 358a03d57f9643953cf1cffb8b901bd6 296 SMART SM00530 9 86 1.8E-4 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3559 358a03d57f9643953cf1cffb8b901bd6 296 PANTHER PTHR35010:SF2 4 292 1.7E-78 T 19-04-2016 AMED_3559 358a03d57f9643953cf1cffb8b901bd6 296 PANTHER PTHR35010 4 292 1.7E-78 T 19-04-2016 AMED_3559 358a03d57f9643953cf1cffb8b901bd6 296 Gene3D G3DSA:1.10.260.40 7 85 8.6E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3559 358a03d57f9643953cf1cffb8b901bd6 296 SUPERFAMILY SSF47413 35 83 4.57E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3559 358a03d57f9643953cf1cffb8b901bd6 296 Pfam PF13560 Helix-turn-helix domain 17 89 3.0E-11 T 19-04-2016 AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 Gene3D G3DSA:3.40.50.300 32 221 3.4E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 Pfam PF07728 AAA domain (dynein-related subfamily) 38 190 2.0E-15 T 19-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 SUPERFAMILY SSF52540 113 264 1.98E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 SUPERFAMILY SSF52540 31 81 1.98E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 SMART SM00382 33 216 2.2E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 PANTHER PTHR22908 16 285 7.5E-71 T 19-04-2016 AMED_1866 41b2fe1e7edccc32f14edaa5a98d40fd 289 PANTHER PTHR22908:SF67 16 285 7.5E-71 T 19-04-2016 AMED_9088 b2c643920d90d67f02a92bf1f9c3e52f 317 Gene3D G3DSA:3.40.710.10 10 306 1.6E-69 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9088 b2c643920d90d67f02a92bf1f9c3e52f 317 SUPERFAMILY SSF56601 5 306 4.07E-68 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9088 b2c643920d90d67f02a92bf1f9c3e52f 317 PANTHER PTHR22935 7 314 2.9E-58 T 19-04-2016 AMED_9088 b2c643920d90d67f02a92bf1f9c3e52f 317 Pfam PF00144 Beta-lactamase 12 299 2.7E-47 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_8565 61e05ecb03643de953369d1131143384 755 ProSitePatterns PS00674 AAA-protein family signature. 630 648 - T 19-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMED_8565 61e05ecb03643de953369d1131143384 755 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 276 395 2.6E-13 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_8565 61e05ecb03643de953369d1131143384 755 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 529 659 2.1E-39 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_8565 61e05ecb03643de953369d1131143384 755 PANTHER PTHR23077 233 751 9.1E-177 T 19-04-2016 AMED_8565 61e05ecb03643de953369d1131143384 755 PANTHER PTHR23077 15 199 9.1E-177 T 19-04-2016 AMED_8565 61e05ecb03643de953369d1131143384 755 Pfam PF02359 Cell division protein 48 (CDC48), N-terminal domain 8 90 9.3E-13 T 19-04-2016 IPR003338 CDC48, N-terminal subdomain AMED_8565 61e05ecb03643de953369d1131143384 755 SUPERFAMILY SSF52540 237 476 2.38E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8565 61e05ecb03643de953369d1131143384 755 SUPERFAMILY SSF52540 490 749 1.14E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8565 61e05ecb03643de953369d1131143384 755 SMART SM00382 272 400 1.4E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8565 61e05ecb03643de953369d1131143384 755 SMART SM00382 525 662 1.1E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8565 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:2.40.40.20 5 90 3.9E-10 T 19-04-2016 AMED_8565 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:3.40.50.300 490 669 4.3E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8565 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:3.40.50.300 231 406 1.6E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8565 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:1.10.8.60 670 739 3.3E-18 T 19-04-2016 AMED_8565 61e05ecb03643de953369d1131143384 755 Gene3D G3DSA:1.10.8.60 407 475 1.3E-15 T 19-04-2016 AMED_8565 61e05ecb03643de953369d1131143384 755 SMART SM01073 7 91 6.2E-18 T 19-04-2016 IPR003338 CDC48, N-terminal subdomain AMED_8565 61e05ecb03643de953369d1131143384 755 SUPERFAMILY SSF50692 7 89 5.88E-10 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_8565 61e05ecb03643de953369d1131143384 755 SMART SM01072 108 192 1.1E-5 T 19-04-2016 IPR004201 CDC48, domain 2 AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 Gene3D G3DSA:3.40.50.10410 82 186 4.1E-30 T 19-04-2016 IPR023215 Nitrophenylphosphatase-like domain AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 12 235 2.4E-36 T 19-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 PANTHER PTHR19288:SF3 1 272 1.5E-77 T 19-04-2016 AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 PIRSF PIRSF000915 1 267 3.2E-63 T 19-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 PANTHER PTHR19288 1 272 1.5E-77 T 19-04-2016 AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 Pfam PF13242 HAD-hyrolase-like 188 260 1.4E-16 T 19-04-2016 AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 SUPERFAMILY SSF56784 9 261 2.97E-58 T 19-04-2016 IPR023214 HAD-like domain AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 Gene3D G3DSA:3.40.50.1000 6 81 4.0E-39 T 19-04-2016 IPR023214 HAD-like domain AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 Gene3D G3DSA:3.40.50.1000 187 263 4.0E-39 T 19-04-2016 IPR023214 HAD-like domain AMED_6030 bc78a161cd0c7fb84d152117063c95ba 321 Pfam PF13344 Haloacid dehalogenase-like hydrolase 12 112 4.5E-25 T 19-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 SUPERFAMILY SSF50129 3 181 1.17E-47 T 19-04-2016 IPR011032 GroES-like AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 143 1.3E-29 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 Pfam PF00107 Zinc-binding dehydrogenase 184 311 9.0E-22 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 PANTHER PTHR11695 14 354 4.9E-97 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 SUPERFAMILY SSF51735 150 313 5.79E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 PANTHER PTHR11695:SF38 14 354 4.9E-97 T 19-04-2016 AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 Gene3D G3DSA:3.90.180.10 2 175 1.8E-52 T 19-04-2016 IPR011032 GroES-like AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 SMART SM00829 10 349 5.2E-5 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 Gene3D G3DSA:3.40.50.720 176 296 4.0E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7121 05b41e1c8e4fd04a52e3f32c15291b85 354 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 Gene3D G3DSA:1.20.1250.20 13 197 4.2E-34 T 19-04-2016 AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 Gene3D G3DSA:1.20.1250.20 268 435 1.2E-12 T 19-04-2016 AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 SUPERFAMILY SSF103473 8 199 2.62E-65 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 SUPERFAMILY SSF103473 247 436 2.62E-65 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 Pfam PF07690 Major Facilitator Superfamily 18 408 5.1E-52 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 PANTHER PTHR23501:SF91 11 449 3.6E-121 T 19-04-2016 AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 411 9.0E-74 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_2009 fb1a1643a8b55aec3f5829ee6b4fff88 462 PANTHER PTHR23501 11 449 3.6E-121 T 19-04-2016 AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 SUPERFAMILY SSF51735 4 227 1.31E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 227 1.0E-37 T 19-04-2016 AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PANTHER PTHR24321 1 230 1.8E-21 T 19-04-2016 AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 Gene3D G3DSA:3.40.50.720 2 227 2.2E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 1.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 1.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 1.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 1.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7663 9c6172dcd9a4141869aabebae2f57f74 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF55681 650 749 3.83E-44 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF55681 504 620 3.83E-44 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF50249 44 76 1.14E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF50249 107 228 1.14E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.930.10 524 750 6.9E-63 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SMART SM00896 761 854 2.9E-38 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF56037 230 428 1.41E-65 T 19-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SMART SM00873 246 419 6.0E-83 T 19-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.56.10 3 40 1.4E-14 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.56.10 189 217 1.4E-14 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF01588 Putative tRNA binding domain 107 179 3.1E-9 T 19-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 PANTHER PTHR10947:SF0 104 622 8.0E-244 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 PANTHER PTHR10947:SF0 2 73 8.0E-244 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF03484 tRNA synthetase B5 domain 438 508 9.6E-14 T 19-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.70.380 763 854 6.7E-27 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 PANTHER PTHR10947:SF0 644 854 8.0E-244 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF03147 Ferredoxin-fold anticodon binding domain 761 854 9.5E-22 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 PANTHER PTHR10947 104 622 8.0E-244 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:2.40.50.140 107 188 9.2E-40 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:2.40.50.140 43 74 9.2E-40 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.50.40.10 233 428 3.8E-76 T 19-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Pfam PF03483 B3/4 domain 246 418 4.0E-63 T 19-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Gene3D G3DSA:3.30.56.20 436 512 1.5E-18 T 19-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF54991 759 854 2.35E-24 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SUPERFAMILY SSF46955 437 512 2.11E-13 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 PANTHER PTHR10947 2 73 8.0E-244 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 PANTHER PTHR10947 644 854 8.0E-244 T 19-04-2016 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 107 854 2.7E-158 T 19-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 848 39.507 T 19-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMED_6050 d15c6764d8ab0c4410c10b8db2e2b6de 855 SMART SM00874 435 508 2.2E-19 T 19-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:2.60.40.1120 777 855 6.2E-10 T 19-04-2016 IPR014766 Carboxypeptidase, regulatory domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:2.60.40.1120 607 690 6.9E-12 T 19-04-2016 IPR014766 Carboxypeptidase, regulatory domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF49464 690 774 1.49E-13 T 19-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Pfam PF13620 Carboxypeptidase regulatory-like domain 690 769 1.2E-14 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Pfam PF13620 Carboxypeptidase regulatory-like domain 777 849 1.7E-10 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Pfam PF13620 Carboxypeptidase regulatory-like domain 607 685 2.2E-13 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Pfam PF07690 Major Facilitator Superfamily 29 432 1.3E-50 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF103473 270 442 2.49E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF103473 12 217 2.49E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF103473 490 515 2.49E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:1.20.1250.20 492 518 1.2E-19 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:1.20.1250.20 285 443 1.2E-19 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:1.20.1250.20 29 213 2.4E-33 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 25 513 4.1E-76 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 PRINTS PR01036 Tetracycline resistance protein TetB signature 148 172 3.5E-5 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 PRINTS PR01036 Tetracycline resistance protein TetB signature 28 52 3.5E-5 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 PRINTS PR01036 Tetracycline resistance protein TetB signature 118 138 3.5E-5 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 Gene3D G3DSA:2.60.40.1120 691 770 2.4E-14 T 19-04-2016 IPR014766 Carboxypeptidase, regulatory domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 PANTHER PTHR23501 2 558 3.6E-181 T 19-04-2016 AMED_9128 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF49464 776 859 2.67E-9 T 19-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 SUPERFAMILY SSF49464 607 687 3.06E-11 T 19-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain AMED_9128 e652090528e15e94fba71cfa2e607b16 863 PANTHER PTHR23501:SF73 2 558 3.6E-181 T 19-04-2016 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 SMART SM00857 32 186 5.4E-6 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 Pfam PF07508 Recombinase 223 348 7.7E-18 T 19-04-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 PANTHER PTHR30461 12 387 7.5E-31 T 19-04-2016 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 Gene3D G3DSA:3.40.50.1390 32 166 1.4E-6 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 PANTHER PTHR30461:SF3 12 387 7.5E-31 T 19-04-2016 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 SUPERFAMILY SSF53041 33 178 2.62E-11 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 Pfam PF13408 Recombinase zinc beta ribbon domain 373 404 9.2E-7 T 19-04-2016 IPR025827 Recombinase zinc beta ribbon domain AMED_5826 5a6492eed595461bcab19f5887d50fa4 584 Pfam PF00239 Resolvase, N terminal domain 33 178 2.8E-11 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF48452 774 934 4.17E-19 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF46894 18 110 2.01E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 819 852 0.39 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 779 812 390.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 859 892 53.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 739 772 12.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00028 899 932 2.4 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 PRINTS PR00364 Disease resistance protein signature 401 415 1.3E-8 T 19-04-2016 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 PRINTS PR00364 Disease resistance protein signature 322 337 1.3E-8 T 19-04-2016 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 PRINTS PR00364 Disease resistance protein signature 486 500 1.3E-8 T 19-04-2016 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM00862 31 110 1.9E-14 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:1.25.40.10 858 945 1.2E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:1.25.40.10 710 857 3.9E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Pfam PF03704 Bacterial transcriptional activator domain 117 261 3.1E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF48452 113 277 1.27E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 PANTHER PTHR22845:SF4 162 636 3.4E-91 T 19-04-2016 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Pfam PF00486 Transcriptional regulatory protein, C terminal 39 109 6.1E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:1.10.10.10 26 112 1.1E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Pfam PF00931 NB-ARC domain 323 556 1.4E-10 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SMART SM01043 117 261 3.4E-47 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF48452 709 808 2.78E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 Gene3D G3DSA:3.40.50.300 327 452 3.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 SUPERFAMILY SSF52540 287 554 7.53E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4743 73caf8d394e9d87adb0a609313c24e7a 950 PANTHER PTHR22845 162 636 3.4E-91 T 19-04-2016 AMED_2789 48b0e85190d4082d2aadb000e745099d 145 SUPERFAMILY SSF50475 1 117 5.8E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2789 48b0e85190d4082d2aadb000e745099d 145 PANTHER PTHR35176 2 143 1.4E-23 T 19-04-2016 AMED_2789 48b0e85190d4082d2aadb000e745099d 145 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 11 138 2.0E-29 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_2789 48b0e85190d4082d2aadb000e745099d 145 Gene3D G3DSA:2.30.110.10 2 139 3.3E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2789 48b0e85190d4082d2aadb000e745099d 145 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 11 94 3.6E-11 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_2789 48b0e85190d4082d2aadb000e745099d 145 PANTHER PTHR35176:SF1 2 143 1.4E-23 T 19-04-2016 AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 Pfam PF13185 GAF domain 14 151 5.0E-11 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 Gene3D G3DSA:3.30.450.40 2 160 1.7E-21 T 19-04-2016 IPR029016 GAF domain-like AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 Gene3D G3DSA:1.10.10.10 161 215 2.1E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 SMART SM00065 14 161 8.0E-8 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 SUPERFAMILY SSF52172 152 211 5.96E-8 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 SMART SM01012 156 211 1.6E-19 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 PIRSF PIRSF036625 1 220 4.7E-67 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 Pfam PF03861 ANTAR domain 158 211 2.3E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6526 793e4fd48e173051e6c0a0bae1037e79 227 SUPERFAMILY SSF55781 14 160 3.71E-22 T 19-04-2016 IPR029016 GAF domain-like AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 Gene3D G3DSA:3.40.50.720 2 248 8.4E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 PANTHER PTHR24320 1 275 1.3E-53 T 19-04-2016 AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 SUPERFAMILY SSF51735 3 245 7.12E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6518 cb1280abcd7d6e2ee287a34bb3fadc54 281 Pfam PF00106 short chain dehydrogenase 7 139 3.3E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.4E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.4E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.4E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 PANTHER PTHR33164 3 149 5.7E-51 T 19-04-2016 AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 PANTHER PTHR33164:SF5 3 149 5.7E-51 T 19-04-2016 AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 SMART SM00347 27 125 6.0E-17 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 Gene3D G3DSA:1.10.10.10 3 142 4.2E-39 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 SUPERFAMILY SSF46785 4 138 4.97E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0315 7574f0111ad3dac8bbfdc280d319ba1e 149 Pfam PF01047 MarR family 34 92 6.4E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 PANTHER PTHR24220:SF568 4 234 3.5E-130 T 19-04-2016 AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 SMART SM00382 27 210 5.1E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 Pfam PF00005 ABC transporter 18 161 8.0E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 PANTHER PTHR24220 4 234 3.5E-130 T 19-04-2016 AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 PIRSF PIRSF039137 1 234 1.2E-106 T 19-04-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 Gene3D G3DSA:3.40.50.300 2 230 1.8E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6146 8eaee242b1cab3264c5ce668397b17d8 237 SUPERFAMILY SSF52540 2 232 6.3E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8407 12669f3bd94e50b37c66e3b5b2e9df09 429 SUPERFAMILY SSF53850 19 425 6.73E-62 T 19-04-2016 AMED_8407 12669f3bd94e50b37c66e3b5b2e9df09 429 Gene3D G3DSA:3.40.190.10 172 340 4.1E-34 T 19-04-2016 AMED_8407 12669f3bd94e50b37c66e3b5b2e9df09 429 Gene3D G3DSA:3.40.190.10 54 171 1.2E-15 T 19-04-2016 AMED_8407 12669f3bd94e50b37c66e3b5b2e9df09 429 PANTHER PTHR30061 8 428 1.0E-53 T 19-04-2016 AMED_8407 12669f3bd94e50b37c66e3b5b2e9df09 429 Pfam PF01547 Bacterial extracellular solute-binding protein 60 331 5.4E-37 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_7245 6921521fc8dbe84a957b5542eb6ba972 513 PANTHER PTHR33744:SF3 4 510 3.5E-19 T 19-04-2016 AMED_7245 6921521fc8dbe84a957b5542eb6ba972 513 Pfam PF13556 PucR C-terminal helix-turn-helix domain 452 508 3.0E-18 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_7245 6921521fc8dbe84a957b5542eb6ba972 513 PANTHER PTHR33744 4 510 3.5E-19 T 19-04-2016 AMED_9111 5cccd5fceff4640642443069905e1f12 273 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 5 271 1.9E-108 T 19-04-2016 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted AMED_9111 5cccd5fceff4640642443069905e1f12 273 Gene3D G3DSA:3.20.20.30 20 115 1.1E-9 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9111 5cccd5fceff4640642443069905e1f12 273 Gene3D G3DSA:3.20.20.30 129 260 1.8E-10 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9111 5cccd5fceff4640642443069905e1f12 273 SUPERFAMILY SSF51679 19 264 5.55E-29 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9111 5cccd5fceff4640642443069905e1f12 273 Pfam PF00296 Luciferase-like monooxygenase 20 115 5.2E-9 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2313 2e16849c0cdeac9f8288b372bc440196 278 SUPERFAMILY SSF47413 34 77 2.57E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2313 2e16849c0cdeac9f8288b372bc440196 278 PANTHER PTHR35010:SF2 1 269 2.5E-85 T 19-04-2016 AMED_2313 2e16849c0cdeac9f8288b372bc440196 278 Pfam PF13560 Helix-turn-helix domain 5 84 4.4E-16 T 19-04-2016 AMED_2313 2e16849c0cdeac9f8288b372bc440196 278 PANTHER PTHR35010 1 269 2.5E-85 T 19-04-2016 AMED_2313 2e16849c0cdeac9f8288b372bc440196 278 Gene3D G3DSA:1.10.260.40 3 80 5.4E-20 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2313 2e16849c0cdeac9f8288b372bc440196 278 SMART SM00530 9 81 3.9E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4268 fbb44b37006dc73992054cfd5d054fcf 201 PANTHER PTHR10204:SF48 3 199 2.3E-21 T 19-04-2016 AMED_4268 fbb44b37006dc73992054cfd5d054fcf 201 Pfam PF03358 NADPH-dependent FMN reductase 4 156 4.3E-22 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_4268 fbb44b37006dc73992054cfd5d054fcf 201 SUPERFAMILY SSF52218 1 189 2.02E-25 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_4268 fbb44b37006dc73992054cfd5d054fcf 201 PANTHER PTHR10204 3 199 2.3E-21 T 19-04-2016 AMED_4268 fbb44b37006dc73992054cfd5d054fcf 201 Gene3D G3DSA:3.40.50.360 2 196 4.1E-17 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 PIRSF PIRSF000190 11 225 3.7E-77 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 PANTHER PTHR10851 8 225 8.7E-98 T 19-04-2016 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 195 208 - T 19-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 46 127 2.5E-21 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 22 225 36.489 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 Gene3D G3DSA:2.30.110.10 28 225 1.5E-82 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 13 225 2.7E-74 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 185 225 9.3E-19 T 19-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 SUPERFAMILY SSF50475 27 225 8.68E-65 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8441 bf10f53f4e6adac6158e658ddffea768 225 PANTHER PTHR10851:SF0 8 225 8.7E-98 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_3429 572eb229c061b077ea361e5ac1bd0558 191 PANTHER PTHR38011 2 191 1.2E-75 T 19-04-2016 AMED_3429 572eb229c061b077ea361e5ac1bd0558 191 SUPERFAMILY SSF53597 7 185 5.11E-25 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_3429 572eb229c061b077ea361e5ac1bd0558 191 Pfam PF01872 RibD C-terminal domain 2 183 1.2E-36 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_3429 572eb229c061b077ea361e5ac1bd0558 191 Gene3D G3DSA:3.40.430.10 5 189 4.5E-24 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_3429 572eb229c061b077ea361e5ac1bd0558 191 PANTHER PTHR38011:SF2 2 191 1.2E-75 T 19-04-2016 AMED_1591 80fc5d28ec732c4f50a29ea2f39244b9 331 PANTHER PTHR32196:SF9 43 316 1.1E-33 T 19-04-2016 AMED_1591 80fc5d28ec732c4f50a29ea2f39244b9 331 PANTHER PTHR32196 43 316 1.1E-33 T 19-04-2016 AMED_1591 80fc5d28ec732c4f50a29ea2f39244b9 331 Pfam PF13407 Periplasmic binding protein domain 46 301 2.4E-46 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1591 80fc5d28ec732c4f50a29ea2f39244b9 331 Gene3D G3DSA:3.40.50.2300 41 160 4.8E-28 T 19-04-2016 AMED_1591 80fc5d28ec732c4f50a29ea2f39244b9 331 Gene3D G3DSA:3.40.50.2300 161 304 2.2E-38 T 19-04-2016 AMED_1591 80fc5d28ec732c4f50a29ea2f39244b9 331 SUPERFAMILY SSF53822 43 323 5.97E-55 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_7497 8b7c35fb1113ad54fbe49641ae6034ef 491 Pfam PF00174 Oxidoreductase molybdopterin binding domain 217 363 1.3E-34 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_7497 8b7c35fb1113ad54fbe49641ae6034ef 491 SUPERFAMILY SSF81296 381 489 7.0E-24 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_7497 8b7c35fb1113ad54fbe49641ae6034ef 491 SUPERFAMILY SSF56524 200 388 3.92E-50 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_7497 8b7c35fb1113ad54fbe49641ae6034ef 491 Gene3D G3DSA:2.60.40.650 387 489 1.6E-21 T 19-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 AMED_7497 8b7c35fb1113ad54fbe49641ae6034ef 491 PANTHER PTHR19372 201 470 3.5E-58 T 19-04-2016 AMED_7497 8b7c35fb1113ad54fbe49641ae6034ef 491 Gene3D G3DSA:3.90.420.10 190 386 1.4E-47 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_3082 c71ab9e0e966985833f172f971f8e274 262 Gene3D G3DSA:3.40.50.620 12 164 1.2E-26 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_3082 c71ab9e0e966985833f172f971f8e274 262 PANTHER PTHR11807 13 260 1.2E-33 T 19-04-2016 AMED_3082 c71ab9e0e966985833f172f971f8e274 262 PANTHER PTHR11807:SF17 13 260 1.2E-33 T 19-04-2016 AMED_3082 c71ab9e0e966985833f172f971f8e274 262 Pfam PF00733 Asparagine synthase 7 67 1.3E-4 T 19-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMED_3082 c71ab9e0e966985833f172f971f8e274 262 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 13 249 1.7E-51 T 19-04-2016 IPR005232 Conserved hypothetical protein CHP00268 AMED_3082 c71ab9e0e966985833f172f971f8e274 262 SUPERFAMILY SSF52402 12 196 1.94E-32 T 19-04-2016 AMED_3082 c71ab9e0e966985833f172f971f8e274 262 PIRSF PIRSF006661 9 262 7.7E-69 T 19-04-2016 IPR005232 Conserved hypothetical protein CHP00268 AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 SUPERFAMILY SSF51445 96 347 4.37E-29 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 Pfam PF01229 Glycosyl hydrolases family 39 171 251 3.9E-6 T 19-04-2016 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 495 591 1.5E-21 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 Gene3D G3DSA:2.80.10.50 451 609 1.1E-30 T 19-04-2016 AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 SUPERFAMILY SSF50370 466 608 1.69E-34 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 Gene3D G3DSA:3.20.20.80 76 344 3.0E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3298 e3a65e9ecd8d8f8df25d951524970c53 614 SMART SM00458 458 609 6.6E-7 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_0997 9ee7089019a7811c312959c912159331 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 221 1.2E-28 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 126 138 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 SUPERFAMILY SSF47203 231 384 2.58E-57 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 Gene3D G3DSA:2.40.110.10 124 221 1.7E-40 T 19-04-2016 AMED_0997 9ee7089019a7811c312959c912159331 385 PANTHER PTHR10909 5 384 5.3E-159 T 19-04-2016 AMED_0997 9ee7089019a7811c312959c912159331 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 120 4.0E-27 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 383 2.9E-48 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 Gene3D G3DSA:1.10.540.10 7 120 3.9E-32 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 SUPERFAMILY SSF56645 7 245 4.32E-74 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_0997 9ee7089019a7811c312959c912159331 385 Gene3D G3DSA:1.20.140.10 222 384 1.6E-68 T 19-04-2016 AMED_0997 9ee7089019a7811c312959c912159331 385 PANTHER PTHR10909:SF10 5 384 5.3E-159 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 PRINTS PR00364 Disease resistance protein signature 287 302 2.4E-8 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 PRINTS PR00364 Disease resistance protein signature 366 380 2.4E-8 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 PRINTS PR00364 Disease resistance protein signature 454 468 2.4E-8 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF00931 NB-ARC domain 283 472 8.0E-10 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:3.40.50.300 287 382 1.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF48452 784 905 2.75E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF48452 88 252 5.18E-27 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 PANTHER PTHR22845:SF4 135 609 2.3E-72 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:1.10.10.10 14 89 1.5E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 PANTHER PTHR22845 135 609 2.3E-72 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:1.25.40.10 199 211 5.5E-30 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Gene3D G3DSA:1.25.40.10 676 898 5.5E-30 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF52540 255 523 1.94E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF03704 Bacterial transcriptional activator domain 93 235 3.0E-37 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF48452 682 813 7.59E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF13424 Tetratricopeptide repeat 708 781 2.3E-9 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF13424 Tetratricopeptide repeat 789 860 1.7E-7 T 19-04-2016 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 Pfam PF00486 Transcriptional regulatory protein, C terminal 15 71 2.0E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM01043 93 235 6.3E-42 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 869 902 0.68 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 709 742 90.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 789 822 200.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 829 862 2.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00028 749 782 35.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SUPERFAMILY SSF46894 10 86 1.25E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3622 4849a4f748d7f215fc31d0d049e8c7d2 943 SMART SM00862 7 86 6.4E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 PIRSF PIRSF000151 1 409 9.3E-75 T 19-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 Pfam PF00171 Aldehyde dehydrogenase family 5 288 4.1E-12 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 SUPERFAMILY SSF53720 7 398 3.67E-60 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 PANTHER PTHR11063 1 373 1.2E-57 T 19-04-2016 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 Gene3D G3DSA:3.40.605.10 3 229 1.6E-62 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 Gene3D G3DSA:3.40.605.10 371 406 1.6E-62 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 Gene3D G3DSA:3.40.309.10 235 369 1.9E-17 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_7074 433a3089701fa8d996b540d9b4be03b0 410 PANTHER PTHR11063:SF8 1 373 1.2E-57 T 19-04-2016 AMED_6306 921e411a370a29ee97c701f0d89372e1 173 Gene3D G3DSA:1.20.5.780 105 139 1.8E-5 T 19-04-2016 AMED_6306 921e411a370a29ee97c701f0d89372e1 173 SUPERFAMILY SSF47598 102 148 1.11E-8 T 19-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 AMED_6306 921e411a370a29ee97c701f0d89372e1 173 Pfam PF05534 HicB family 107 137 3.5E-6 T 19-04-2016 IPR008651 Uncharacterised protein family HicB AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 SUPERFAMILY SSF53671 2 309 1.28E-89 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PANTHER PTHR11405 2 308 2.8E-120 T 19-04-2016 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 Gene3D G3DSA:3.40.50.1370 2 144 2.3E-46 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PANTHER PTHR11405:SF16 2 308 2.8E-120 T 19-04-2016 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 Gene3D G3DSA:3.40.50.1370 145 286 5.3E-45 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 135 152 8.0E-32 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 289 303 8.0E-32 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 8.0E-32 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 265 270 8.0E-32 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 77 86 8.0E-32 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 219 228 8.0E-32 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 3.1E-18 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 3.1E-18 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 273 296 3.1E-18 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 3.1E-18 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 310 38.312 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 149 1.3E-35 T 19-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 306 3.7E-22 T 19-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMED_2746 22215b2c5506693f639b602bd9fc0a43 315 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 3 308 6.5E-83 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 PANTHER PTHR30032:SF1 149 356 8.1E-37 T 19-04-2016 AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 SUPERFAMILY SSF47090 2 69 2.35E-13 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 Pfam PF01471 Putative peptidoglycan binding domain 91 144 5.6E-17 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 Pfam PF01471 Putative peptidoglycan binding domain 10 69 3.5E-11 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 Gene3D G3DSA:3.40.630.40 177 356 2.3E-41 T 19-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 Gene3D G3DSA:1.10.101.10 1 75 1.1E-18 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 Gene3D G3DSA:1.10.101.10 90 153 3.9E-20 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 PANTHER PTHR30032 149 356 8.1E-37 T 19-04-2016 AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 180 353 8.1E-37 T 19-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 SUPERFAMILY SSF47090 82 148 4.71E-19 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 SUPERFAMILY SSF53187 177 356 2.95E-42 T 19-04-2016 AMED_9355 9f2a186e5eeda79e5efe6f9f7421b207 382 SMART SM00646 238 353 2.9E-27 T 19-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 AMED_7076 2bbc06b53459fce8a480f32c8cae235a 382 Pfam PF13546 DDE superfamily endonuclease 20 232 3.2E-51 T 19-04-2016 AMED_7076 2bbc06b53459fce8a480f32c8cae235a 382 PANTHER PTHR33627 1 362 2.8E-48 T 19-04-2016 AMED_7076 2bbc06b53459fce8a480f32c8cae235a 382 PANTHER PTHR33627:SF1 1 362 2.8E-48 T 19-04-2016 AMED_7076 2bbc06b53459fce8a480f32c8cae235a 382 SUPERFAMILY SSF53098 55 377 1.9E-20 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_8209 9a9e548beee5ae9b89b5ec619bb783fe 136 SUPERFAMILY SSF50475 3 118 1.16E-18 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8209 9a9e548beee5ae9b89b5ec619bb783fe 136 PANTHER PTHR35176:SF3 1 126 1.1E-16 T 19-04-2016 AMED_8209 9a9e548beee5ae9b89b5ec619bb783fe 136 PANTHER PTHR35176 1 126 1.1E-16 T 19-04-2016 AMED_8209 9a9e548beee5ae9b89b5ec619bb783fe 136 Gene3D G3DSA:2.30.110.10 1 123 6.2E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8209 9a9e548beee5ae9b89b5ec619bb783fe 136 TIGRFAM TIGR04023 PPOX_MSMEG_5819: PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family 2 119 8.8E-47 T 19-04-2016 IPR024031 PPOX class F420-dependent enzyme, MSMEG_5819/OxyR family AMED_8209 9a9e548beee5ae9b89b5ec619bb783fe 136 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 2 92 1.3E-14 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 SUPERFAMILY SSF89550 62 272 1.44E-22 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Gene3D G3DSA:3.20.20.140 62 279 8.9E-26 T 19-04-2016 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Gene3D G3DSA:1.10.150.280 876 925 5.2E-6 T 19-04-2016 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Pfam PF02811 PHP domain 63 236 2.0E-29 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 PANTHER PTHR32294:SF4 57 1087 0.0 T 19-04-2016 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 62 941 2.7E-204 T 19-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 SMART SM00481 62 129 8.8E-25 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 PANTHER PTHR32294 57 1087 0.0 T 19-04-2016 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 355 772 7.9E-144 T 19-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Gene3D G3DSA:2.40.50.140 1007 1086 8.0E-4 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 61 1103 12.547 T 19-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0815 0b8523594f689cbf8ced6cbcbc7f2c66 1103 Pfam PF14579 Helix-hairpin-helix motif 845 938 4.0E-26 T 19-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 SUPERFAMILY SSF47413 2 71 1.02E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 Pfam PF13560 Helix-turn-helix domain 7 63 7.8E-13 T 19-04-2016 AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 Pfam PF07883 Cupin domain 110 177 1.3E-14 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 Gene3D G3DSA:2.60.120.10 105 179 1.6E-22 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 SMART SM00530 10 65 2.4E-11 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 SUPERFAMILY SSF51182 58 179 3.2E-28 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 PANTHER PTHR10245 6 190 4.7E-32 T 19-04-2016 AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 Gene3D G3DSA:1.10.260.40 7 104 1.3E-20 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4215 a775c4aef2e7f014de58af0590ae3c80 196 PANTHER PTHR10245:SF9 6 190 4.7E-32 T 19-04-2016 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 185 328 1.0E-63 T 19-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 16 328 1.1E-129 T 19-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 3 330 44.818 T 19-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 PANTHER PTHR21371 4 331 1.3E-178 T 19-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 SUPERFAMILY SSF48179 185 330 1.34E-66 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 SUPERFAMILY SSF51735 4 184 9.88E-71 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 179 1.4E-73 T 19-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1687 6edb26afa5680bf0efa50a1c3626701d 337 Gene3D G3DSA:1.10.1040.10 31 327 6.9E-108 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 PANTHER PTHR10285:SF7 1 255 9.3E-151 T 19-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 PANTHER PTHR10285:SF7 271 310 9.3E-151 T 19-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 SUPERFAMILY SSF52540 6 309 4.75E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0179 c047c0fd053a84034b4b9517361ef091 310 PANTHER PTHR10285 1 255 9.3E-151 T 19-04-2016 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 PANTHER PTHR10285 271 310 9.3E-151 T 19-04-2016 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 Hamap MF_00215 Pantothenate kinase [coaA]. 1 310 174.473 T 19-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 227 3.0E-12 T 19-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 9 309 1.1E-121 T 19-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_0179 c047c0fd053a84034b4b9517361ef091 310 Gene3D G3DSA:3.40.50.300 8 309 2.9E-105 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0179 c047c0fd053a84034b4b9517361ef091 310 PIRSF PIRSF000545 1 310 1.7E-140 T 19-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_3446 feefa84c8dced3078d0050ba426c4c8a 325 Gene3D G3DSA:3.40.1210.10 38 317 1.1E-40 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_3446 feefa84c8dced3078d0050ba426c4c8a 325 Pfam PF01975 Survival protein SurE 39 265 5.2E-31 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_3446 feefa84c8dced3078d0050ba426c4c8a 325 SUPERFAMILY SSF64167 38 99 1.12E-31 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_3446 feefa84c8dced3078d0050ba426c4c8a 325 SUPERFAMILY SSF64167 128 320 1.12E-31 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_3446 feefa84c8dced3078d0050ba426c4c8a 325 PANTHER PTHR30457 126 311 2.5E-21 T 19-04-2016 AMED_3446 feefa84c8dced3078d0050ba426c4c8a 325 PANTHER PTHR30457 38 101 2.5E-21 T 19-04-2016 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 Gene3D G3DSA:1.20.1560.10 16 319 5.6E-17 T 19-04-2016 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 PANTHER PTHR24221 9 593 1.4E-83 T 19-04-2016 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 PANTHER PTHR24221:SF138 9 593 1.4E-83 T 19-04-2016 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 SMART SM00382 369 567 1.2E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5542 976e9a1f0721ff877e62185f2b076935 596 SUPERFAMILY SSF52540 336 591 1.07E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5542 976e9a1f0721ff877e62185f2b076935 596 SUPERFAMILY SSF90123 11 319 4.32E-22 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 Pfam PF00005 ABC transporter 360 515 3.1E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5542 976e9a1f0721ff877e62185f2b076935 596 Gene3D G3DSA:3.40.50.300 343 584 1.6E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1785 30b1f18322e36cdedf0369ebfef45416 156 Gene3D G3DSA:1.10.1780.10 16 151 2.4E-13 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_1785 30b1f18322e36cdedf0369ebfef45416 156 SUPERFAMILY SSF81923 16 62 4.32E-5 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_1785 30b1f18322e36cdedf0369ebfef45416 156 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 20 64 3.4E-7 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_1785 30b1f18322e36cdedf0369ebfef45416 156 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 133 150 1.1 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PANTHER PTHR11712 45 396 2.7E-88 T 19-04-2016 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 341 350 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 Pfam PF00067 Cytochrome P450 177 365 4.2E-19 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 339 348 3.0E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 271 282 3.0E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 236 253 3.0E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00385 P450 superfamily signature 348 359 3.0E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 SUPERFAMILY SSF48264 19 396 3.54E-92 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 348 359 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 318 333 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 271 282 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 190 212 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 135 151 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 339 348 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 88 99 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 290 317 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 PRINTS PR00359 B-class P450 signature 152 167 1.7E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7018 8824704c8537561e185cf54d0c5d66a2 396 Gene3D G3DSA:1.10.630.10 11 396 9.7E-123 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 Gene3D G3DSA:2.30.110.10 3 62 3.7E-6 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 Pfam PF04075 Domain of unknown function (DUF385) 2 100 6.7E-27 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 PANTHER PTHR39428 1 234 7.7E-56 T 19-04-2016 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 2 102 2.0E-23 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 SUPERFAMILY SSF50475 3 131 5.74E-5 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 Pfam PF01814 Hemerythrin HHE cation binding domain 114 234 3.3E-14 T 19-04-2016 IPR012312 Haemerythrin-like AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 PANTHER PTHR39428:SF1 1 234 7.7E-56 T 19-04-2016 AMED_7642 0f89af5a9d12d9a4d66ffe43056fb57a 242 Gene3D G3DSA:1.20.120.520 104 240 2.2E-27 T 19-04-2016 AMED_2989 e3ee7605204f5b7311fc0bcbad4bf230 170 Pfam PF03551 Transcriptional regulator PadR-like family 7 77 1.4E-10 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_2989 e3ee7605204f5b7311fc0bcbad4bf230 170 PANTHER PTHR33169 1 163 7.7E-24 T 19-04-2016 AMED_2989 e3ee7605204f5b7311fc0bcbad4bf230 170 Pfam PF10400 Virulence activator alpha C-term 90 168 5.4E-10 T 19-04-2016 IPR018309 Transcription regulator PadR, C-terminal AMED_2989 e3ee7605204f5b7311fc0bcbad4bf230 170 SUPERFAMILY SSF46785 2 168 1.14E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2989 e3ee7605204f5b7311fc0bcbad4bf230 170 PANTHER PTHR33169:SF4 1 163 7.7E-24 T 19-04-2016 AMED_2989 e3ee7605204f5b7311fc0bcbad4bf230 170 Gene3D G3DSA:1.10.10.10 1 81 5.3E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6246 7db2397f1f9f9ab683c6a3f86ce6390f 178 PANTHER PTHR35525:SF3 9 173 2.1E-25 T 19-04-2016 AMED_6246 7db2397f1f9f9ab683c6a3f86ce6390f 178 Gene3D G3DSA:1.10.3300.10 3 174 4.7E-42 T 19-04-2016 IPR023286 ABATE domain AMED_6246 7db2397f1f9f9ab683c6a3f86ce6390f 178 Pfam PF07336 Putative stress-induced transcription regulator 10 128 1.6E-19 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_6246 7db2397f1f9f9ab683c6a3f86ce6390f 178 Pfam PF11706 CGNR zinc finger 132 174 2.5E-17 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_6246 7db2397f1f9f9ab683c6a3f86ce6390f 178 PANTHER PTHR35525 9 173 2.1E-25 T 19-04-2016 AMED_6246 7db2397f1f9f9ab683c6a3f86ce6390f 178 SUPERFAMILY SSF160904 3 174 4.05E-41 T 19-04-2016 AMED_3831 dd9f475a896a4061c8998186957367b3 258 PANTHER PTHR11941 4 258 2.1E-62 T 19-04-2016 AMED_3831 dd9f475a896a4061c8998186957367b3 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 244 1.2E-41 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3831 dd9f475a896a4061c8998186957367b3 258 SUPERFAMILY SSF52096 5 253 2.13E-66 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3831 dd9f475a896a4061c8998186957367b3 258 Gene3D G3DSA:3.90.226.10 2 250 6.7E-67 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Gene3D G3DSA:1.20.5.510 1 29 3.6E-4 T 19-04-2016 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 SMART SM00458 716 854 9.9E-5 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF08760 Domain of unknown function (DUF1793) 544 709 2.0E-52 T 19-04-2016 IPR014870 Domain of unknown function DUF1793 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF16334 Domain of unknown function (DUF4964) 48 108 1.8E-13 T 19-04-2016 IPR032515 Domain of unknown function DUF4964 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 SUPERFAMILY SSF50370 719 854 5.57E-35 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF17168 Domain of unknown function (DUF5127) 127 355 2.5E-69 T 19-04-2016 IPR033433 Domain of unknown function DUF5127 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF16335 Domain of unknown function (DUF4965) 366 538 1.2E-68 T 19-04-2016 IPR032514 Domain of unknown function DUF4965 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 PANTHER PTHR31987 22 749 1.1E-222 T 19-04-2016 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 761 841 1.5E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 Gene3D G3DSA:2.80.10.50 721 853 1.1E-27 T 19-04-2016 AMED_5153 ee4fe79abd540ed703ceb73633cc61e2 854 PANTHER PTHR31987:SF1 22 749 1.1E-222 T 19-04-2016 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 SUPERFAMILY SSF52161 4 142 5.23E-60 T 19-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 PANTHER PTHR11545 3 144 3.3E-72 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 PIRSF PIRSF002181 4 150 7.3E-50 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 146 29.283 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 19-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 Gene3D G3DSA:3.90.1180.10 3 140 2.4E-64 T 19-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 7 141 4.0E-62 T 19-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMED_0726 0c8cd5014917eac93801f92fbb4501c1 150 Pfam PF00572 Ribosomal protein L13 15 138 1.8E-57 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMED_6544 418bd40c01c930b4e821c1ca8a7f1026 247 Gene3D G3DSA:3.30.450.40 18 178 4.1E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_6544 418bd40c01c930b4e821c1ca8a7f1026 247 PIRSF PIRSF036625 2 245 3.3E-33 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_6544 418bd40c01c930b4e821c1ca8a7f1026 247 Pfam PF13185 GAF domain 35 164 2.5E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6544 418bd40c01c930b4e821c1ca8a7f1026 247 SUPERFAMILY SSF55781 35 178 1.37E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_1520 c5839886e7339834570c117364a03a4d 489 SUPERFAMILY SSF56563 320 481 4.58E-5 T 19-04-2016 AMED_1520 c5839886e7339834570c117364a03a4d 489 PANTHER PTHR24567 36 234 8.8E-179 T 19-04-2016 AMED_1520 c5839886e7339834570c117364a03a4d 489 PANTHER PTHR24567 302 486 8.8E-179 T 19-04-2016 AMED_1520 c5839886e7339834570c117364a03a4d 489 PANTHER PTHR24567:SF37 36 234 8.8E-179 T 19-04-2016 AMED_1520 c5839886e7339834570c117364a03a4d 489 PANTHER PTHR24567:SF37 302 486 8.8E-179 T 19-04-2016 AMED_1520 c5839886e7339834570c117364a03a4d 489 SUPERFAMILY SSF51206 119 225 1.13E-21 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_1520 c5839886e7339834570c117364a03a4d 489 SMART SM00100 113 236 3.5E-9 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_1520 c5839886e7339834570c117364a03a4d 489 Gene3D G3DSA:2.60.120.10 119 231 7.3E-21 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1520 c5839886e7339834570c117364a03a4d 489 Pfam PF00027 Cyclic nucleotide-binding domain 133 220 1.3E-14 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_7081 ff6fc49ff78c12eb1feabadd06808b2c 508 Pfam PF05872 Bacterial protein of unknown function (DUF853) 34 505 1.9E-189 T 19-04-2016 IPR033186 Helicase HerA-like C-terminal AMED_7081 ff6fc49ff78c12eb1feabadd06808b2c 508 SUPERFAMILY SSF52540 31 397 1.9E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7081 ff6fc49ff78c12eb1feabadd06808b2c 508 Gene3D G3DSA:3.40.50.300 229 394 4.3E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7081 ff6fc49ff78c12eb1feabadd06808b2c 508 Gene3D G3DSA:3.40.50.300 38 111 4.3E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7081 ff6fc49ff78c12eb1feabadd06808b2c 508 PANTHER PTHR30121 5 465 5.0E-156 T 19-04-2016 AMED_7081 ff6fc49ff78c12eb1feabadd06808b2c 508 PANTHER PTHR30121:SF3 5 465 5.0E-156 T 19-04-2016 AMED_0825 a26f37ec140f5e560ee76d87870b51e9 144 Gene3D G3DSA:3.40.1280.10 12 140 5.3E-25 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_0825 a26f37ec140f5e560ee76d87870b51e9 144 Pfam PF00588 SpoU rRNA Methylase family 11 138 1.1E-20 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_0825 a26f37ec140f5e560ee76d87870b51e9 144 SUPERFAMILY SSF75217 8 140 1.5E-24 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_0825 a26f37ec140f5e560ee76d87870b51e9 144 PANTHER PTHR12029 12 138 3.7E-21 T 19-04-2016 AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 SMART SM00829 1 296 6.8E-6 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 SUPERFAMILY SSF50129 2 134 5.93E-18 T 19-04-2016 IPR011032 GroES-like AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 SUPERFAMILY SSF51735 94 260 3.81E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 Pfam PF00107 Zinc-binding dehydrogenase 133 256 8.6E-16 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 Gene3D G3DSA:3.90.180.10 2 127 1.0E-20 T 19-04-2016 IPR011032 GroES-like AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 Gene3D G3DSA:3.40.50.720 128 245 5.6E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4855 62c0c842980368c72eb324e4fc3c5ec1 298 PANTHER PTHR11695 1 288 1.2E-48 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_5965 4c045b8b9f6e3e525482ce9c69450653 400 PANTHER PTHR30634:SF8 7 391 1.2E-135 T 19-04-2016 AMED_5965 4c045b8b9f6e3e525482ce9c69450653 400 SUPERFAMILY SSF53300 222 388 1.43E-25 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_5965 4c045b8b9f6e3e525482ce9c69450653 400 Pfam PF05762 VWA domain containing CoxE-like protein 162 380 2.9E-55 T 19-04-2016 IPR008912 Uncharacterised protein family CoxE-like AMED_5965 4c045b8b9f6e3e525482ce9c69450653 400 PANTHER PTHR30634 7 391 1.2E-135 T 19-04-2016 AMED_5965 4c045b8b9f6e3e525482ce9c69450653 400 SMART SM00327 224 383 0.0017 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 Pfam PF02682 Allophanate hydrolase subunit 1 1 185 6.1E-59 T 19-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 SUPERFAMILY SSF160467 2 50 6.28E-6 T 19-04-2016 AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 PANTHER PTHR34698:SF2 16 196 2.0E-62 T 19-04-2016 AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 SUPERFAMILY SSF50891 75 197 6.83E-40 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 PANTHER PTHR34698 16 196 2.0E-62 T 19-04-2016 AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 Gene3D G3DSA:2.40.100.10 75 197 3.2E-46 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 SMART SM00796 1 186 1.8E-76 T 19-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D AMED_9016 6b9b9077e0cbfb115d5373fa2d0066c4 198 Gene3D G3DSA:3.30.1360.40 2 49 8.5E-7 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 SUPERFAMILY SSF47336 690 759 7.2E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 PANTHER PTHR24095:SF137 114 296 3.4E-190 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 PANTHER PTHR24095:SF137 315 759 3.4E-190 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.40.50.980 339 486 3.6E-35 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 ProSitePatterns PS00455 Putative AMP-binding domain signature. 329 340 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Pfam PF00550 Phosphopantetheine attachment site 698 759 2.1E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Pfam PF13193 AMP-binding enzyme C-terminal domain 592 669 1.2E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Pfam PF00501 AMP-binding enzyme 149 583 8.2E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 170 607 2.0E-114 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.30.300.30 579 700 6.3E-36 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.40.50.980 142 255 1.1E-37 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:3.40.50.980 314 338 1.1E-37 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 SUPERFAMILY SSF56801 127 707 3.53E-138 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 SMART SM00823 Phosphopantetheine attachment site 696 763 3.6E-6 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:2.30.38.10 497 574 4.1E-23 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 Gene3D G3DSA:1.10.1200.10 701 760 1.9E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 ProSitePatterns PS00012 Phosphopantetheine attachment site. 720 735 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 PANTHER PTHR24095 114 296 3.4E-190 T 19-04-2016 AMED_6243 d9fed74e2f1ad32c42ff4de551646818 775 PANTHER PTHR24095 315 759 3.4E-190 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:3.40.50.740 326 488 2.7E-23 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:3.40.228.10 152 325 1.2E-41 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Pfam PF00384 Molybdopterin oxidoreductase 59 437 1.2E-31 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 51 7.7E-12 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 415 432 - T 19-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:2.20.25.90 3 60 1.6E-14 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 SMART SM00926 2 56 3.1E-11 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 PANTHER PTHR11615:SF110 548 763 2.7E-164 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 PANTHER PTHR11615:SF110 1 245 2.7E-164 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 PANTHER PTHR11615:SF110 279 494 2.7E-164 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 SUPERFAMILY SSF50692 613 751 6.1E-23 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Pfam PF01568 Molydopterin dinucleotide binding domain 622 740 5.2E-15 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:3.40.50.740 61 132 3.9E-10 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 PANTHER PTHR11615 548 763 2.7E-164 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 PANTHER PTHR11615 1 245 2.7E-164 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 PANTHER PTHR11615 279 494 2.7E-164 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 SUPERFAMILY SSF53706 3 479 3.4E-104 T 19-04-2016 AMED_7645 bd55c51c5477cdd1e2d0cead6dadae4e 772 Gene3D G3DSA:2.40.40.20 613 755 1.3E-20 T 19-04-2016 AMED_1523 2ea56f6ffabe7b0e519f9cab7d61afe0 340 Gene3D G3DSA:3.40.50.2300 37 159 4.2E-27 T 19-04-2016 AMED_1523 2ea56f6ffabe7b0e519f9cab7d61afe0 340 SUPERFAMILY SSF53822 41 339 1.5E-53 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1523 2ea56f6ffabe7b0e519f9cab7d61afe0 340 PANTHER PTHR32196 41 300 1.7E-39 T 19-04-2016 AMED_1523 2ea56f6ffabe7b0e519f9cab7d61afe0 340 Pfam PF13407 Periplasmic binding protein domain 42 298 4.4E-44 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1523 2ea56f6ffabe7b0e519f9cab7d61afe0 340 Gene3D G3DSA:3.40.50.2300 160 305 1.3E-22 T 19-04-2016 AMED_1523 2ea56f6ffabe7b0e519f9cab7d61afe0 340 PANTHER PTHR32196:SF1 41 300 1.7E-39 T 19-04-2016 IPR030159 Autoinducer 2-binding protein LsrB/rhamnose-binding protein RhaS GO:0043190 AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 PANTHER PTHR33154 9 97 7.8E-26 T 19-04-2016 AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 Gene3D G3DSA:1.10.10.10 7 104 1.5E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 Pfam PF12840 Helix-turn-helix domain 7 64 4.9E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 6.3E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 6.3E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 6.3E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 SUPERFAMILY SSF46785 7 101 6.39E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2684 984712a4d206ebcff9b1ff7ff928ba89 106 SMART SM00418 7 85 1.7E-25 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_1609 b5b2eb6d4d5550e88f6edd97c72384c5 329 SUPERFAMILY SSF51679 1 327 5.36E-79 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1609 b5b2eb6d4d5550e88f6edd97c72384c5 329 PANTHER PTHR30011 1 327 8.9E-52 T 19-04-2016 AMED_1609 b5b2eb6d4d5550e88f6edd97c72384c5 329 Pfam PF00296 Luciferase-like monooxygenase 1 298 1.4E-54 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1609 b5b2eb6d4d5550e88f6edd97c72384c5 329 Gene3D G3DSA:3.20.20.30 1 327 9.8E-86 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1609 b5b2eb6d4d5550e88f6edd97c72384c5 329 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 17 234 6.8E-82 T 19-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 Gene3D G3DSA:3.90.1310.10 74 145 5.5E-10 T 19-04-2016 AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 Pfam PF00905 Penicillin binding protein transpeptidase domain 159 482 3.5E-66 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 SUPERFAMILY SSF56601 140 485 4.27E-78 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 PANTHER PTHR30627:SF3 1 484 4.8E-124 T 19-04-2016 AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 Gene3D G3DSA:3.40.710.10 146 484 5.4E-87 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 PANTHER PTHR30627 1 484 4.8E-124 T 19-04-2016 AMED_0053 f5efdd17b65fff36684ce895ad61852f 489 SUPERFAMILY SSF56519 59 138 5.76E-6 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 16 506 32.01 T 19-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Pfam PF01225 Mur ligase family, catalytic domain 41 116 5.3E-13 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Gene3D G3DSA:3.40.1390.10 33 120 1.8E-19 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Gene3D G3DSA:3.40.1190.10 123 352 7.9E-70 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Gene3D G3DSA:3.90.190.20 353 499 6.9E-52 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 PANTHER PTHR23135 28 512 8.3E-169 T 19-04-2016 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 39 506 1.2E-142 T 19-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Pfam PF08245 Mur ligase middle domain 131 329 5.3E-43 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 SUPERFAMILY SSF63418 36 120 8.89E-19 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 SUPERFAMILY SSF53244 349 508 4.71E-46 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 PANTHER PTHR23135:SF4 28 512 8.3E-169 T 19-04-2016 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 Pfam PF02875 Mur ligase family, glutamate ligase domain 349 434 1.9E-21 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6256 254d30b0e798199663d1f00a9f73c042 514 SUPERFAMILY SSF53623 122 347 2.4E-64 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 PANTHER PTHR11601 1 386 3.9E-111 T 19-04-2016 AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 Pfam PF00266 Aminotransferase class-V 20 382 3.6E-61 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 PANTHER PTHR11601:SF42 1 386 3.9E-111 T 19-04-2016 AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 SUPERFAMILY SSF53383 3 386 1.83E-83 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 Gene3D G3DSA:3.40.640.10 31 272 9.2E-62 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 204 224 - T 19-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMED_2145 7b622f40f6e9a1441aa238933268ecb7 386 Gene3D G3DSA:3.90.1150.10 273 386 1.7E-29 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_1832 723e0587d0f563332075eac130750fa8 401 Pfam PF07690 Major Facilitator Superfamily 26 362 1.8E-40 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1832 723e0587d0f563332075eac130750fa8 401 Gene3D G3DSA:1.20.1250.20 19 196 1.5E-30 T 19-04-2016 AMED_1832 723e0587d0f563332075eac130750fa8 401 Gene3D G3DSA:1.20.1250.20 217 396 1.5E-7 T 19-04-2016 AMED_1832 723e0587d0f563332075eac130750fa8 401 SUPERFAMILY SSF103473 6 396 1.44E-59 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1832 723e0587d0f563332075eac130750fa8 401 PANTHER PTHR23502 12 392 4.0E-134 T 19-04-2016 AMED_1832 723e0587d0f563332075eac130750fa8 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 16 395 1.6E-99 T 19-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AMED_1832 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 135 160 3.4E-6 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1832 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 3.4E-6 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1832 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 259 281 3.4E-6 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1832 723e0587d0f563332075eac130750fa8 401 PRINTS PR00173 Glutamate-aspartate symporter signature 305 324 3.4E-6 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1832 723e0587d0f563332075eac130750fa8 401 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 88 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_1832 723e0587d0f563332075eac130750fa8 401 PANTHER PTHR23502:SF19 12 392 4.0E-134 T 19-04-2016 AMED_3761 5dc868bdb45cbd51448abdab12a0aee2 226 Gene3D G3DSA:2.102.10.10 73 219 2.4E-24 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_3761 5dc868bdb45cbd51448abdab12a0aee2 226 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 74 99 1.4E-4 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_3761 5dc868bdb45cbd51448abdab12a0aee2 226 SUPERFAMILY SSF50022 83 219 1.83E-23 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_3761 5dc868bdb45cbd51448abdab12a0aee2 226 Pfam PF00355 Rieske [2Fe-2S] domain 122 196 8.8E-13 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_6545 4a5df554aa3dce93e3c9cacb32cffce9 230 SUPERFAMILY SSF55781 18 161 7.46E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_6545 4a5df554aa3dce93e3c9cacb32cffce9 230 Gene3D G3DSA:3.30.450.40 18 161 1.0E-7 T 19-04-2016 IPR029016 GAF domain-like AMED_6545 4a5df554aa3dce93e3c9cacb32cffce9 230 SMART SM01012 140 219 3.9E-4 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6545 4a5df554aa3dce93e3c9cacb32cffce9 230 Gene3D G3DSA:1.10.10.10 177 221 3.5E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6545 4a5df554aa3dce93e3c9cacb32cffce9 230 Pfam PF03861 ANTAR domain 178 219 8.8E-7 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_0863 64fb42217009139d48b6132e4439a57a 401 Gene3D G3DSA:1.20.1250.20 216 393 4.8E-20 T 19-04-2016 AMED_0863 64fb42217009139d48b6132e4439a57a 401 PANTHER PTHR23527:SF1 10 399 2.1E-70 T 19-04-2016 AMED_0863 64fb42217009139d48b6132e4439a57a 401 Pfam PF07690 Major Facilitator Superfamily 36 363 2.3E-41 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0863 64fb42217009139d48b6132e4439a57a 401 SUPERFAMILY SSF103473 13 394 1.44E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0863 64fb42217009139d48b6132e4439a57a 401 PANTHER PTHR23527 10 399 2.1E-70 T 19-04-2016 AMED_0863 64fb42217009139d48b6132e4439a57a 401 Gene3D G3DSA:1.20.1250.20 17 207 1.3E-27 T 19-04-2016 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF52440 12 124 1.44E-46 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 SMART SM00878 346 456 1.8E-52 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Gene3D G3DSA:2.40.50.100 530 599 2.3E-23 T 19-04-2016 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF56059 126 335 3.54E-60 T 19-04-2016 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF51246 340 460 1.36E-35 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF02785 Biotin carboxylase C-terminal domain 346 456 2.3E-34 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 PANTHER PTHR18866:SF100 13 599 4.0E-284 T 19-04-2016 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Gene3D G3DSA:3.30.1490.20 141 213 2.5E-24 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 PANTHER PTHR18866 13 599 4.0E-284 T 19-04-2016 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF00289 Biotin carboxylase, N-terminal domain 13 121 4.8E-43 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF00364 Biotin-requiring enzyme 533 598 7.2E-18 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 SUPERFAMILY SSF51230 529 598 1.14E-20 T 19-04-2016 IPR011053 Single hybrid motif AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Gene3D G3DSA:3.40.50.20 13 140 2.3E-48 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Gene3D G3DSA:3.30.470.20 214 460 1.1E-89 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 126 334 4.9E-79 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 555 572 - T 19-04-2016 IPR001882 Biotin-binding site AMED_0934 63ca951ebd42c1eb815151bcb4819ed6 599 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 Gene3D G3DSA:1.20.1560.10 21 338 3.4E-63 T 19-04-2016 AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 Pfam PF00005 ABC transporter 372 521 5.5E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 Gene3D G3DSA:3.40.50.300 355 585 2.6E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 Pfam PF00664 ABC transporter transmembrane region 36 306 1.9E-40 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 SUPERFAMILY SSF90123 16 341 6.8E-63 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 SMART SM00382 381 567 2.1E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 SUPERFAMILY SSF52540 345 589 1.33E-89 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1953 2d2251f2f458ec8780fef59c69e07383 592 PANTHER PTHR24221 17 589 3.6E-202 T 19-04-2016 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 352 373 1.4E-12 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 385 407 1.4E-12 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 242 258 1.4E-12 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 PRINTS PR00741 Glycosyl hydrolase family 29 signature 148 164 1.4E-12 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 SMART SM00812 35 461 7.1E-128 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 PANTHER PTHR10030 1 596 1.2E-62 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:2.60.20.10 526 608 8.3E-13 T 19-04-2016 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:2.60.40.1180 428 512 1.8E-10 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 660 734 1.4E-12 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:3.20.20.80 34 402 4.2E-85 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Gene3D G3DSA:2.80.10.50 616 746 6.6E-18 T 19-04-2016 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 SUPERFAMILY SSF50370 612 746 4.32E-26 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Pfam PF16757 Alpha-L-fucosidase C-terminal domain 431 512 2.1E-7 T 19-04-2016 IPR031919 Alpha-L-fucosidase, C-terminal KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 Pfam PF01120 Alpha-L-fucosidase 31 399 2.1E-84 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_3093 e2e5a972c14a0c936c42b093cdfc3d4a 749 SUPERFAMILY SSF51445 35 402 1.28E-73 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1762 61128ec390d40a4498513cf650bd5d7b 260 PRINTS PR00116 Arginase signature 107 134 5.4E-6 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_1762 61128ec390d40a4498513cf650bd5d7b 260 PRINTS PR00116 Arginase signature 157 175 5.4E-6 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_1762 61128ec390d40a4498513cf650bd5d7b 260 SUPERFAMILY SSF52768 69 238 1.8E-33 T 19-04-2016 AMED_1762 61128ec390d40a4498513cf650bd5d7b 260 PANTHER PTHR11358 80 237 1.2E-18 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_1762 61128ec390d40a4498513cf650bd5d7b 260 Pfam PF00491 Arginase family 69 238 4.3E-21 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_1762 61128ec390d40a4498513cf650bd5d7b 260 Gene3D G3DSA:3.40.800.10 67 238 1.2E-30 T 19-04-2016 IPR023696 Ureohydrolase domain AMED_3903 b776d9d61369b662e22201350bc4887c 888 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 819 833 3.7E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3903 b776d9d61369b662e22201350bc4887c 888 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 833 849 3.7E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3903 b776d9d61369b662e22201350bc4887c 888 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 849 861 3.7E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3903 b776d9d61369b662e22201350bc4887c 888 SUPERFAMILY SSF46894 807 880 3.4E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3903 b776d9d61369b662e22201350bc4887c 888 SUPERFAMILY SSF52540 42 239 1.59E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3903 b776d9d61369b662e22201350bc4887c 888 SMART SM00421 816 873 1.3E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3903 b776d9d61369b662e22201350bc4887c 888 Gene3D G3DSA:1.10.10.10 814 880 1.2E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3903 b776d9d61369b662e22201350bc4887c 888 Pfam PF00196 Bacterial regulatory proteins, luxR family 818 873 2.7E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3903 b776d9d61369b662e22201350bc4887c 888 Gene3D G3DSA:3.40.50.300 45 161 3.0E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7774 18578e642fc552ec53136993d1deb361 121 SUPERFAMILY SSF51344 4 86 4.84E-20 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7774 18578e642fc552ec53136993d1deb361 121 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 84 1.6E-24 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7774 18578e642fc552ec53136993d1deb361 121 Gene3D G3DSA:2.60.15.10 3 91 1.4E-24 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7774 18578e642fc552ec53136993d1deb361 121 PANTHER PTHR13822 3 117 6.1E-22 T 19-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7774 18578e642fc552ec53136993d1deb361 121 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 84 1.0E-25 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7774 18578e642fc552ec53136993d1deb361 121 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 116 16.436 T 19-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7774 18578e642fc552ec53136993d1deb361 121 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 100 1.5E-22 T 19-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_2492 777aabfdfa51ad8588ebd0716ed3cc64 150 PANTHER PTHR36222 3 144 3.6E-52 T 19-04-2016 AMED_2492 777aabfdfa51ad8588ebd0716ed3cc64 150 SMART SM00960 15 105 9.8E-29 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_2492 777aabfdfa51ad8588ebd0716ed3cc64 150 Gene3D G3DSA:3.30.450.30 8 130 6.5E-26 T 19-04-2016 AMED_2492 777aabfdfa51ad8588ebd0716ed3cc64 150 SUPERFAMILY SSF103196 9 133 1.06E-32 T 19-04-2016 AMED_2492 777aabfdfa51ad8588ebd0716ed3cc64 150 Pfam PF03259 Roadblock/LC7 domain 16 105 1.0E-20 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_8447 6051c9bb4a936fc735510c7bf62156a0 226 PANTHER PTHR33620 6 226 2.4E-27 T 19-04-2016 AMED_8447 6051c9bb4a936fc735510c7bf62156a0 226 PIRSF PIRSF009467 1 226 1.7E-33 T 19-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMED_8447 6051c9bb4a936fc735510c7bf62156a0 226 Pfam PF01730 UreF 33 178 4.8E-19 T 19-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMED_1028 23be4467f809de34d62f40c04b669e1a 205 Gene3D G3DSA:1.10.357.10 4 202 1.9E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1028 23be4467f809de34d62f40c04b669e1a 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1028 23be4467f809de34d62f40c04b669e1a 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1028 23be4467f809de34d62f40c04b669e1a 205 PANTHER PTHR30055 1 205 1.2E-22 T 19-04-2016 AMED_1028 23be4467f809de34d62f40c04b669e1a 205 SUPERFAMILY SSF48498 84 200 1.45E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1028 23be4467f809de34d62f40c04b669e1a 205 SUPERFAMILY SSF46689 4 69 2.62E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1028 23be4467f809de34d62f40c04b669e1a 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 63 1.1E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF56059 88 328 8.31E-56 T 19-04-2016 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SMART SM00878 339 447 3.2E-50 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF08326 Acetyl-CoA carboxylase, central region 1012 1203 2.3E-18 T 19-04-2016 IPR013537 Acetyl-CoA carboxylase, central domain GO:0003989|GO:0005524|GO:0006633 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: REACT_1505|Reactome: REACT_22258|UniPathway: UPA00655 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF51230 580 655 1.57E-14 T 19-04-2016 IPR011053 Single hybrid motif AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.40.50.20 2 134 1.6E-37 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.90.226.10 1249 1456 1.1E-21 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:2.40.50.100 584 655 2.0E-16 T 19-04-2016 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF52096 1291 1497 8.53E-22 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF51246 334 449 1.57E-35 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF52440 2 118 1.06E-32 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.30.1490.20 135 206 5.2E-24 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.30.470.20 209 448 3.5E-82 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 SUPERFAMILY SSF52096 1518 1821 1.82E-36 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 158 172 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Gene3D G3DSA:3.90.226.10 1514 1823 7.3E-52 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 120 327 4.9E-59 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF02785 Biotin carboxylase C-terminal domain 339 448 3.6E-35 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 PANTHER PTHR18866 9 573 2.6E-182 T 19-04-2016 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF01039 Carboxyl transferase domain 1330 1820 6.2E-30 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF00364 Biotin-requiring enzyme 589 654 1.3E-8 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_4166 9f90b2d4c129f161c61bb291de381b21 1825 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 115 1.4E-33 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 PANTHER PTHR30218 36 783 0.0 T 19-04-2016 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Hamap MF_00347 Polyphosphate kinase [ppk]. 110 789 34.199 T 19-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Pfam PF13089 Polyphosphate kinase N-terminal domain 113 219 9.6E-36 T 19-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 SUPERFAMILY SSF143724 216 417 4.32E-67 T 19-04-2016 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 PANTHER PTHR30218:SF0 36 783 0.0 T 19-04-2016 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Gene3D G3DSA:3.30.870.10 609 785 1.2E-63 T 19-04-2016 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Gene3D G3DSA:3.30.1840.10 216 405 8.6E-75 T 19-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Pfam PF02503 Polyphosphate kinase middle domain 231 427 9.8E-70 T 19-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 PIRSF PIRSF015589 93 788 1.3E-268 T 19-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Gene3D G3DSA:3.30.870.10 420 608 3.1E-79 T 19-04-2016 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 SUPERFAMILY SSF56024 610 785 8.97E-61 T 19-04-2016 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 112 779 6.7E-250 T 19-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 Pfam PF13090 Polyphosphate kinase C-terminal domain 438 779 5.5E-147 T 19-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 SUPERFAMILY SSF140356 110 214 2.09E-35 T 19-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMED_1728 2fc2d9dbd561f530d09179e830cd7cd1 790 SUPERFAMILY SSF56024 433 606 3.45E-57 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF00990 Diguanylate cyclase, GGDEF domain 357 508 7.6E-40 T 19-04-2016 IPR000160 GGDEF domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.20.20.450 526 770 4.0E-96 T 19-04-2016 IPR001633 EAL domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55785 219 344 7.85E-18 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.70.270 358 521 2.8E-48 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00091 122 189 0.023 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00091 227 293 0.0019 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00091 4 70 6.2E-7 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55785 125 210 6.63E-15 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 121 1.3E-10 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 224 348 5.1E-10 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 126 227 3.1E-9 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.450.20 219 344 7.4E-18 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55785 6 112 6.93E-12 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00052 523 769 3.1E-106 T 19-04-2016 IPR001633 EAL domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 PANTHER PTHR33121:SF13 475 770 1.9E-80 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF55073 362 514 1.18E-40 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF00563 EAL domain 529 764 8.6E-77 T 19-04-2016 IPR001633 EAL domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.450.20 6 112 3.1E-12 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Gene3D G3DSA:3.30.450.20 120 216 6.0E-13 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF13426 PAS domain 238 345 1.1E-8 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF13426 PAS domain 14 113 4.5E-9 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 355 511 4.7E-37 T 19-04-2016 IPR000160 GGDEF domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 PANTHER PTHR33121 475 770 1.9E-80 T 19-04-2016 AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SMART SM00267 346 513 5.5E-57 T 19-04-2016 IPR000160 GGDEF domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 Pfam PF13188 PAS domain 123 170 0.0015 T 19-04-2016 IPR000014 PAS domain AMED_0382 02bd412797eacc4dddbaaa9fb7d22242 773 SUPERFAMILY SSF141868 528 771 7.32E-87 T 19-04-2016 IPR001633 EAL domain AMED_3489 a9bc87afc6dc85ef1737cd55a1c369ff 333 SMART SM00062 47 283 0.0018 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_3489 a9bc87afc6dc85ef1737cd55a1c369ff 333 Pfam PF13379 NMT1-like family 42 263 8.1E-27 T 19-04-2016 AMED_3489 a9bc87afc6dc85ef1737cd55a1c369ff 333 SUPERFAMILY SSF53850 44 262 6.54E-38 T 19-04-2016 AMED_3489 a9bc87afc6dc85ef1737cd55a1c369ff 333 PANTHER PTHR30024 4 327 6.8E-32 T 19-04-2016 AMED_3489 a9bc87afc6dc85ef1737cd55a1c369ff 333 Gene3D G3DSA:3.40.190.10 133 257 3.0E-21 T 19-04-2016 AMED_1824 abdfdacb35d1fc274a7e157626158589 442 PANTHER PTHR11751 127 430 2.1E-36 T 19-04-2016 AMED_1824 abdfdacb35d1fc274a7e157626158589 442 Gene3D G3DSA:3.40.640.10 125 329 1.3E-42 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1824 abdfdacb35d1fc274a7e157626158589 442 Pfam PF00155 Aminotransferase class I and II 131 414 9.9E-10 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_1824 abdfdacb35d1fc274a7e157626158589 442 Gene3D G3DSA:1.10.10.10 6 69 5.0E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1824 abdfdacb35d1fc274a7e157626158589 442 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 4.5E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1824 abdfdacb35d1fc274a7e157626158589 442 SMART SM00345 9 68 1.0E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1824 abdfdacb35d1fc274a7e157626158589 442 SUPERFAMILY SSF53383 106 432 1.31E-56 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1824 abdfdacb35d1fc274a7e157626158589 442 SUPERFAMILY SSF46785 5 72 8.16E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 SUPERFAMILY SSF51206 84 200 2.23E-20 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 Pfam PF00027 Cyclic nucleotide-binding domain 110 193 1.6E-12 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 SMART SM00100 90 213 7.5E-6 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 Gene3D G3DSA:2.60.120.10 85 211 4.8E-19 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 PANTHER PTHR24567:SF37 279 462 2.6E-136 T 19-04-2016 AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 PANTHER PTHR24567:SF37 11 211 2.6E-136 T 19-04-2016 AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 PANTHER PTHR24567 279 462 2.6E-136 T 19-04-2016 AMED_3238 4c33aa4eafe66b62341abfce24c408bf 462 PANTHER PTHR24567 11 211 2.6E-136 T 19-04-2016 AMED_3146 6297520d83b4ae3fc4240f9336ee3c34 474 SUPERFAMILY SSF53850 65 463 1.31E-40 T 19-04-2016 AMED_3146 6297520d83b4ae3fc4240f9336ee3c34 474 PANTHER PTHR30061 1 474 2.4E-27 T 19-04-2016 AMED_3146 6297520d83b4ae3fc4240f9336ee3c34 474 Gene3D G3DSA:3.40.190.10 63 168 1.1E-10 T 19-04-2016 AMED_3146 6297520d83b4ae3fc4240f9336ee3c34 474 Pfam PF01547 Bacterial extracellular solute-binding protein 74 364 1.5E-19 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_3146 6297520d83b4ae3fc4240f9336ee3c34 474 PANTHER PTHR30061:SF1 1 474 2.4E-27 T 19-04-2016 AMED_3146 6297520d83b4ae3fc4240f9336ee3c34 474 Gene3D G3DSA:3.40.190.10 175 375 1.5E-25 T 19-04-2016 AMED_5838 63682e18d5bec5f499aa27259a21bea3 399 SUPERFAMILY SSF103473 5 393 6.93E-43 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5838 63682e18d5bec5f499aa27259a21bea3 399 Gene3D G3DSA:1.20.1250.20 213 389 2.2E-15 T 19-04-2016 AMED_5838 63682e18d5bec5f499aa27259a21bea3 399 PANTHER PTHR23514 8 392 2.0E-92 T 19-04-2016 AMED_5838 63682e18d5bec5f499aa27259a21bea3 399 PANTHER PTHR23514:SF13 8 392 2.0E-92 T 19-04-2016 AMED_5838 63682e18d5bec5f499aa27259a21bea3 399 Gene3D G3DSA:1.20.1250.20 13 185 7.9E-16 T 19-04-2016 AMED_5838 63682e18d5bec5f499aa27259a21bea3 399 Pfam PF07690 Major Facilitator Superfamily 15 274 1.6E-13 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 Gene3D G3DSA:3.30.428.10 15 147 6.2E-37 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 ProSitePatterns PS00892 HIT domain signature. 99 117 - T 19-04-2016 IPR019808 Histidine triad, conserved site AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 PANTHER PTHR23089:SF7 12 123 1.5E-32 T 19-04-2016 AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 SUPERFAMILY SSF54197 12 147 5.26E-36 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 PRINTS PR00332 Histidine triad family signature 38 56 1.8E-10 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 PRINTS PR00332 Histidine triad family signature 106 116 1.8E-10 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 PRINTS PR00332 Histidine triad family signature 17 33 1.8E-10 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 Pfam PF01230 HIT domain 24 119 8.0E-22 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_4316 a53d82e04ffcf20d1cf381e6e6645d6f 149 PANTHER PTHR23089 12 123 1.5E-32 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_9070 65aaec5969648c2a5e8f544d0ae2b772 334 Gene3D G3DSA:2.130.10.10 4 331 1.5E-65 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_9070 65aaec5969648c2a5e8f544d0ae2b772 334 PANTHER PTHR30344 5 334 3.2E-56 T 19-04-2016 AMED_9070 65aaec5969648c2a5e8f544d0ae2b772 334 SUPERFAMILY SSF51004 25 307 1.44E-25 T 19-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AMED_9070 65aaec5969648c2a5e8f544d0ae2b772 334 PANTHER PTHR30344:SF1 5 334 3.2E-56 T 19-04-2016 AMED_9070 65aaec5969648c2a5e8f544d0ae2b772 334 Pfam PF10282 Lactonase, 7-bladed beta-propeller 5 317 3.0E-71 T 19-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:1.10.10.10 174 223 2.8E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF54909 66 139 2.68E-5 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Pfam PF01037 Lrp/AsnC ligand binding domain 245 313 3.6E-10 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 177 193 1.8E-8 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 204 223 1.8E-8 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 193 204 1.8E-8 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:1.10.10.10 5 52 3.0E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF54909 241 316 1.47E-9 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Pfam PF13404 AsnC-type helix-turn-helix domain 177 218 1.2E-11 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Pfam PF13404 AsnC-type helix-turn-helix domain 6 46 2.2E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF46785 176 223 4.29E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 SUPERFAMILY SSF46785 5 52 1.24E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:3.30.70.920 241 315 1.3E-11 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 Gene3D G3DSA:3.30.70.920 68 140 2.1E-8 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2919 cae80f0b80b775fe8d93638d82656645 321 SMART SM00344 5 109 3.3E-5 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 SMART SM00344 177 282 4.0E-6 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 PANTHER PTHR30154:SF12 170 320 4.4E-27 T 19-04-2016 AMED_2919 cae80f0b80b775fe8d93638d82656645 321 PANTHER PTHR30154 170 320 4.4E-27 T 19-04-2016 AMED_1649 d04e7115017108978f068906d8c87f2b 501 Pfam PF09210 Domain of unknown function (DUF1957) 403 496 1.5E-19 T 19-04-2016 IPR015293 Domain of unknown function DUF1957 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AMED_1649 d04e7115017108978f068906d8c87f2b 501 SUPERFAMILY SSF88688 382 498 4.58E-18 T 19-04-2016 IPR028995 Glycoside hydrolase families 57/38, central domain AMED_1649 d04e7115017108978f068906d8c87f2b 501 SUPERFAMILY SSF88713 4 387 2.31E-89 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_1649 d04e7115017108978f068906d8c87f2b 501 Gene3D G3DSA:3.20.110.10 2 387 1.2E-115 T 19-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain AMED_1649 d04e7115017108978f068906d8c87f2b 501 Gene3D G3DSA:1.20.1430.10 402 497 1.8E-12 T 19-04-2016 IPR015293 Domain of unknown function DUF1957 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AMED_1649 d04e7115017108978f068906d8c87f2b 501 PANTHER PTHR41695 2 501 1.8E-140 T 19-04-2016 AMED_1649 d04e7115017108978f068906d8c87f2b 501 Pfam PF03065 Glycosyl hydrolase family 57 8 337 3.1E-23 T 19-04-2016 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 AMED_9126 dc4d471444077d6cb5ab1fdddfacfde6 141 SUPERFAMILY SSF50475 6 138 4.27E-35 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_9126 dc4d471444077d6cb5ab1fdddfacfde6 141 Gene3D G3DSA:2.30.110.10 3 138 3.0E-26 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_9126 dc4d471444077d6cb5ab1fdddfacfde6 141 PANTHER PTHR35176 2 139 1.1E-49 T 19-04-2016 AMED_9126 dc4d471444077d6cb5ab1fdddfacfde6 141 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 87 3.0E-15 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_9126 dc4d471444077d6cb5ab1fdddfacfde6 141 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 8 137 3.6E-39 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_9126 dc4d471444077d6cb5ab1fdddfacfde6 141 PANTHER PTHR35176:SF2 2 139 1.1E-49 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.70.1430 42 129 1.3E-26 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82714 181 271 6.41E-12 T 19-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 1.4E-42 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82866 298 495 9.29E-44 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82693 42 126 3.84E-23 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:1.10.3850.10 278 495 1.6E-57 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:1.10.3850.10 802 1016 9.5E-56 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82866 794 1019 1.31E-45 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82693 139 180 2.14E-12 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82693 274 326 2.14E-12 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PANTHER PTHR32063 1 1039 0.0 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.2090.10 180 272 1.5E-13 T 19-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 Pfam PF00873 AcrB/AcrD/AcrF family 5 1014 1.0E-220 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 PANTHER PTHR32063:SF0 1 1039 0.0 T 19-04-2016 AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 SUPERFAMILY SSF82714 711 792 4.05E-11 T 19-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMED_2579 116db7f571431edb45e6a8453be10d8e 1046 Gene3D G3DSA:3.30.2090.10 710 797 3.9E-11 T 19-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 PANTHER PTHR32282:SF0 646 683 2.2E-118 T 19-04-2016 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 PANTHER PTHR32282 2 630 2.2E-118 T 19-04-2016 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 Pfam PF00912 Transglycosylase 52 238 7.5E-57 T 19-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 SUPERFAMILY SSF56601 279 478 1.64E-67 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 SUPERFAMILY SSF56601 505 675 1.64E-67 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 SUPERFAMILY SSF56601 220 242 1.64E-67 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 PANTHER PTHR32282:SF0 2 630 2.2E-118 T 19-04-2016 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 PANTHER PTHR32282 646 683 2.2E-118 T 19-04-2016 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 Gene3D G3DSA:1.10.3810.10 53 253 1.8E-64 T 19-04-2016 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 Pfam PF00905 Penicillin binding protein transpeptidase domain 348 603 6.7E-23 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 SUPERFAMILY SSF53955 41 261 9.84E-65 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_3027 1f1e4c40967b780f7b5da2357bcc338d 684 Gene3D G3DSA:3.40.710.10 280 674 1.7E-75 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 PANTHER PTHR30005 3 317 5.8E-110 T 19-04-2016 AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 PANTHER PTHR30005:SF1 3 317 5.8E-110 T 19-04-2016 AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 Pfam PF02541 Ppx/GppA phosphatase family 28 315 1.1E-67 T 19-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 SUPERFAMILY SSF53067 3 127 2.2E-34 T 19-04-2016 AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 SUPERFAMILY SSF53067 133 316 8.29E-36 T 19-04-2016 AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 Gene3D G3DSA:3.30.420.150 130 316 5.9E-57 T 19-04-2016 AMED_8196 34007b06ea35d43bbee38aa5161bce75 317 Gene3D G3DSA:3.30.420.40 1 127 1.4E-49 T 19-04-2016 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 Pfam PF00403 Heavy-metal-associated domain 6 65 3.1E-13 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 SUPERFAMILY SSF55008 1 66 2.09E-17 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 Gene3D G3DSA:3.30.70.100 4 66 4.9E-22 T 19-04-2016 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 53 66 2.0E-5 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 3 15 2.0E-5 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 15 28 2.0E-5 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_3508 c82fda58bb23aab2b8751f8b24d57b0d 68 PRINTS PR00944 Copper ion binding protein signature 28 41 2.0E-5 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 8.6E-8 T 19-04-2016 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 25 44 8.6E-8 T 19-04-2016 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 8.6E-8 T 19-04-2016 AMED_8061 cb8516c74f27417d61ab413553688415 318 SUPERFAMILY SSF51905 1 300 1.3E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 Hamap MF_01685 Ferredoxin--NADP reductase. 1 317 36.394 T 19-04-2016 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 AMED_8061 cb8516c74f27417d61ab413553688415 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 281 1.5E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 PANTHER PTHR22912 1 306 1.9E-72 T 19-04-2016 AMED_8061 cb8516c74f27417d61ab413553688415 318 Gene3D G3DSA:3.50.50.60 184 307 3.7E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 Gene3D G3DSA:3.50.50.60 1 120 2.6E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 Gene3D G3DSA:3.50.50.60 136 183 5.4E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 282 3.2E-8 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 3.2E-8 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 56 66 3.2E-8 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 3.2E-8 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_8061 cb8516c74f27417d61ab413553688415 318 PANTHER PTHR22912:SF158 1 306 1.9E-72 T 19-04-2016 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 SUPERFAMILY SSF52518 6 346 1.26E-56 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 Pfam PF09363 XFP C-terminal domain 562 762 3.7E-74 T 19-04-2016 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 PIRSF PIRSF017245 1 764 4.8E-283 T 19-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 SUPERFAMILY SSF52518 354 568 7.46E-23 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 PANTHER PTHR31273 6 764 0.0 T 19-04-2016 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 PANTHER PTHR31273:SF0 6 764 0.0 T 19-04-2016 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 Gene3D G3DSA:3.40.50.970 17 292 1.6E-22 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 ProSitePatterns PS60002 Phosphoketolase signature 1. 136 142 - T 19-04-2016 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 Pfam PF09364 XFP N-terminal domain 6 362 5.5E-126 T 19-04-2016 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 377 551 2.8E-77 T 19-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 AMED_6575 3ec3df6360f7fb335d70ce114f04d04a 764 ProSitePatterns PS60003 Phosphoketolase signature 2. 149 167 - T 19-04-2016 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 AMED_0136 e5bdce8a1e4f9745c59db699549973e9 596 Pfam PF00474 Sodium:solute symporter family 297 500 1.7E-16 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_0136 e5bdce8a1e4f9745c59db699549973e9 596 Pfam PF00474 Sodium:solute symporter family 35 196 8.2E-24 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_0136 e5bdce8a1e4f9745c59db699549973e9 596 PANTHER PTHR11819 2 233 1.1E-103 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_0136 e5bdce8a1e4f9745c59db699549973e9 596 PANTHER PTHR11819:SF159 2 233 1.1E-103 T 19-04-2016 AMED_0136 e5bdce8a1e4f9745c59db699549973e9 596 PANTHER PTHR11819 280 563 1.1E-103 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_0136 e5bdce8a1e4f9745c59db699549973e9 596 PANTHER PTHR11819:SF159 280 563 1.1E-103 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Gene3D G3DSA:3.40.50.980 3 153 1.0E-42 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 PANTHER PTHR24095 1 581 2.6E-174 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 ProSitePatterns PS00012 Phosphopantetheine attachment site. 539 554 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 SUPERFAMILY SSF47336 508 581 1.07E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 SMART SM00823 Phosphopantetheine attachment site 515 584 1.3E-10 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Gene3D G3DSA:3.40.50.980 154 318 3.2E-36 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Gene3D G3DSA:1.10.1200.10 520 582 3.3E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Pfam PF00550 Phosphopantetheine attachment site 517 580 1.5E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Pfam PF00501 AMP-binding enzyme 10 405 1.3E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Gene3D G3DSA:3.30.300.30 400 519 2.2E-37 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 ProSitePatterns PS00455 Putative AMP-binding domain signature. 144 155 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 SUPERFAMILY SSF56801 3 528 4.45E-143 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 29 429 4.2E-113 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 PANTHER PTHR24095:SF137 1 581 2.6E-174 T 19-04-2016 AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Pfam PF13193 AMP-binding enzyme C-terminal domain 413 486 1.3E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4794 55bc616eab3b231cf16fc376f7e459db 592 Gene3D G3DSA:2.30.38.10 319 395 9.0E-23 T 19-04-2016 AMED_1203 10644ce7573ad1742fe940cc7e4a2fce 400 Pfam PF13416 Bacterial extracellular solute-binding protein 75 344 4.5E-26 T 19-04-2016 AMED_1203 10644ce7573ad1742fe940cc7e4a2fce 400 Gene3D G3DSA:3.40.190.10 54 179 1.0E-12 T 19-04-2016 AMED_1203 10644ce7573ad1742fe940cc7e4a2fce 400 PANTHER PTHR30222:SF5 42 337 8.7E-51 T 19-04-2016 AMED_1203 10644ce7573ad1742fe940cc7e4a2fce 400 SUPERFAMILY SSF53850 52 399 7.92E-64 T 19-04-2016 AMED_1203 10644ce7573ad1742fe940cc7e4a2fce 400 Gene3D G3DSA:3.40.190.10 180 330 1.5E-32 T 19-04-2016 AMED_1203 10644ce7573ad1742fe940cc7e4a2fce 400 PANTHER PTHR30222 42 337 8.7E-51 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1076 1196 4.6E-26 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF55874 1017 1200 1.57E-44 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.40.50.2300 1264 1342 9.1E-7 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF00512 His Kinase A (phospho-acceptor) domain 961 1028 9.5E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF00672 HAMP domain 660 711 1.4E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00387 1075 1198 3.6E-38 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF58104 38 311 1.02E-17 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1123 1137 1.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1182 1195 1.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1158 1176 1.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1141 1151 1.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:1.10.287.130 952 1024 4.0E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00065 738 889 1.0E-10 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF58104 314 588 8.11E-16 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF47384 945 1030 9.22E-21 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF52172 1263 1341 2.7E-6 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.40.50.2300 1389 1515 7.9E-41 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF58104 590 714 6.28E-12 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00388 960 1028 3.4E-21 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF00072 Response regulator receiver domain 1398 1511 2.3E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00448 1396 1510 1.8E-38 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PANTHER PTHR24423 22 49 1.3E-139 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PANTHER PTHR24423 939 1201 1.3E-139 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 PANTHER PTHR24423 1368 1514 1.3E-139 T 19-04-2016 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.30.565.10 1029 1200 2.1E-44 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Gene3D G3DSA:3.30.450.40 713 875 2.1E-25 T 19-04-2016 IPR029016 GAF domain-like AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 Pfam PF13185 GAF domain 737 873 1.3E-20 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF52172 1390 1514 4.27E-38 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SUPERFAMILY SSF55781 701 873 4.8E-30 T 19-04-2016 IPR029016 GAF domain-like AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 110 162 1.2E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 478 530 3.3E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 386 438 4.5E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 294 346 4.7E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 570 622 1.9E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 18 70 0.055 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 202 254 2.0E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4526 ba972bf4201eaa951604b5e146c9d7f3 1516 SMART SM00304 662 714 1.1E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 PANTHER PTHR11751 114 467 5.0E-105 T 19-04-2016 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 Gene3D G3DSA:3.40.640.10 141 359 3.9E-60 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 SMART SM00345 17 76 3.7E-21 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 Pfam PF00155 Aminotransferase class I and II 143 394 1.5E-16 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 SUPERFAMILY SSF53383 109 466 1.09E-87 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 SUPERFAMILY SSF46785 6 80 2.09E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 PANTHER PTHR11751:SF10 114 467 5.0E-105 T 19-04-2016 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 Gene3D G3DSA:1.10.10.10 13 79 1.8E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.2E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.2E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2403 cf4e1c5a46eba3875607e813137a77c9 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 2.4E-20 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5931 9cda7a827cd674ac9b504cf9a59aeaac 141 Pfam PF04075 Domain of unknown function (DUF385) 20 135 5.9E-29 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_5931 9cda7a827cd674ac9b504cf9a59aeaac 141 SUPERFAMILY SSF50475 27 101 1.29E-7 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5931 9cda7a827cd674ac9b504cf9a59aeaac 141 Gene3D G3DSA:2.30.110.10 25 93 1.9E-8 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5931 9cda7a827cd674ac9b504cf9a59aeaac 141 PANTHER PTHR39428 10 141 5.2E-27 T 19-04-2016 AMED_5931 9cda7a827cd674ac9b504cf9a59aeaac 141 PANTHER PTHR39428:SF1 10 141 5.2E-27 T 19-04-2016 AMED_5931 9cda7a827cd674ac9b504cf9a59aeaac 141 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 29 137 6.4E-24 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_0881 5d0e9781cee0c6360246f742d09185c3 477 Gene3D G3DSA:3.40.605.10 23 270 1.7E-99 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_0881 5d0e9781cee0c6360246f742d09185c3 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_0881 5d0e9781cee0c6360246f742d09185c3 477 Gene3D G3DSA:3.40.309.10 271 455 2.7E-68 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_0881 5d0e9781cee0c6360246f742d09185c3 477 SUPERFAMILY SSF53720 20 477 1.96E-163 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0881 5d0e9781cee0c6360246f742d09185c3 477 PANTHER PTHR11699 1 477 4.7E-222 T 19-04-2016 AMED_0881 5d0e9781cee0c6360246f742d09185c3 477 Pfam PF00171 Aldehyde dehydrogenase family 30 477 8.4E-168 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 PANTHER PTHR15172 6 661 1.3E-140 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 SUPERFAMILY SSF50370 668 792 3.28E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 PANTHER PTHR15172:SF1 6 661 1.3E-140 T 19-04-2016 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 SMART SM00458 666 794 1.8E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 Pfam PF00652 Ricin-type beta-trefoil lectin domain 670 791 5.8E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 Gene3D G3DSA:3.20.20.80 48 345 1.1E-18 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 SUPERFAMILY SSF49899 529 636 1.19E-6 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 Pfam PF02057 Glycosyl hydrolase family 59 38 655 1.9E-94 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 Gene3D G3DSA:2.60.120.200 561 638 4.8E-4 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 552 634 2.3E-6 T 19-04-2016 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 Gene3D G3DSA:2.80.10.50 671 792 1.1E-39 T 19-04-2016 AMED_6431 2d2b87354757db7a452d58eafa7065a0 794 SUPERFAMILY SSF51445 46 347 1.05E-32 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3464 0165bfd197783e92bf921695d35c6b33 627 Gene3D G3DSA:3.40.50.300 295 548 6.0E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3464 0165bfd197783e92bf921695d35c6b33 627 ProSitePatterns PS00211 ABC transporters family signature. 449 463 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 SUPERFAMILY SSF161098 74 257 1.96E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 277 5.2E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 PANTHER PTHR24220 304 610 4.2E-112 T 19-04-2016 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 SMART SM00382 331 533 3.2E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3464 0165bfd197783e92bf921695d35c6b33 627 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 537 590 1.7E-12 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 537 610 5.8E-18 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 Pfam PF00005 ABC transporter 323 476 1.8E-20 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 PANTHER PTHR24220:SF535 304 610 4.2E-112 T 19-04-2016 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 Gene3D G3DSA:1.10.3720.10 73 268 5.6E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3464 0165bfd197783e92bf921695d35c6b33 627 SUPERFAMILY SSF52540 289 540 2.72E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4646 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:3.30.2080.10 756 901 2.0E-55 T 19-04-2016 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 SUPERFAMILY SSF48208 485 876 4.76E-17 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 SUPERFAMILY SSF48208 400 446 4.76E-17 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 Pfam PF07971 Glycosyl hydrolase family 92 373 893 5.2E-143 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 PANTHER PTHR12143 143 900 9.6E-174 T 19-04-2016 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:1.20.1050.60 492 582 4.4E-31 T 19-04-2016 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 PANTHER PTHR12143:SF22 143 900 9.6E-174 T 19-04-2016 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:2.70.98.10 162 454 4.5E-73 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:2.60.120.260 916 1036 8.6E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4646 0cda638ca5498fbd254813d3094895be 1040 Gene3D G3DSA:1.20.1610.10 585 755 8.3E-48 T 19-04-2016 AMED_4646 0cda638ca5498fbd254813d3094895be 1040 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 162 896 3.9E-141 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_5073 8935075ba205195e35b2293e83323bd9 381 PANTHER PTHR13794:SF55 16 373 4.4E-68 T 19-04-2016 AMED_5073 8935075ba205195e35b2293e83323bd9 381 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 22 136 1.4E-18 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_5073 8935075ba205195e35b2293e83323bd9 381 PANTHER PTHR13794 16 373 4.4E-68 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_5073 8935075ba205195e35b2293e83323bd9 381 SUPERFAMILY SSF51604 124 376 4.19E-56 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5073 8935075ba205195e35b2293e83323bd9 381 Gene3D G3DSA:3.20.20.120 138 376 7.8E-56 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5073 8935075ba205195e35b2293e83323bd9 381 SUPERFAMILY SSF54826 19 136 1.61E-20 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_5073 8935075ba205195e35b2293e83323bd9 381 Gene3D G3DSA:3.30.390.10 18 137 1.3E-28 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_5073 8935075ba205195e35b2293e83323bd9 381 Pfam PF13378 Enolase C-terminal domain-like 158 370 6.9E-47 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5073 8935075ba205195e35b2293e83323bd9 381 SMART SM00922 154 250 2.4E-18 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 Gene3D G3DSA:1.10.10.10 2 72 4.5E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 Gene3D G3DSA:1.20.120.530 87 222 2.2E-30 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 SMART SM00895 89 211 1.4E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 61 1.5E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 SUPERFAMILY SSF46785 2 65 3.11E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 SUPERFAMILY SSF48008 87 217 4.71E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 Pfam PF07729 FCD domain 89 210 9.5E-26 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3145 d4eea96eda3fecd3730283e7b4afd941 231 SMART SM00345 3 61 3.0E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3985 991dae23926c634b4c84501bce3a1b02 453 SUPERFAMILY SSF50370 318 451 1.0E-36 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3985 991dae23926c634b4c84501bce3a1b02 453 PANTHER PTHR38050:SF1 10 313 1.1E-115 T 19-04-2016 AMED_3985 991dae23926c634b4c84501bce3a1b02 453 Gene3D G3DSA:3.40.50.1820 36 272 5.9E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3985 991dae23926c634b4c84501bce3a1b02 453 Gene3D G3DSA:2.80.10.50 318 452 2.5E-28 T 19-04-2016 AMED_3985 991dae23926c634b4c84501bce3a1b02 453 PANTHER PTHR38050 10 313 1.1E-115 T 19-04-2016 AMED_3985 991dae23926c634b4c84501bce3a1b02 453 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 352 438 2.0E-22 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3985 991dae23926c634b4c84501bce3a1b02 453 SUPERFAMILY SSF53474 55 214 1.59E-12 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3985 991dae23926c634b4c84501bce3a1b02 453 SMART SM00458 315 451 3.7E-8 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 235 245 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 Pfam PF00082 Subtilase family 186 456 1.5E-38 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 PRINTS PR00723 Subtilisin serine protease family (S8) signature 185 204 4.4E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 PRINTS PR00723 Subtilisin serine protease family (S8) signature 417 433 4.4E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 PRINTS PR00723 Subtilisin serine protease family (S8) signature 231 244 4.4E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 418 428 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 PANTHER PTHR10795:SF419 162 453 2.5E-43 T 19-04-2016 AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 190 201 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 PANTHER PTHR10795 162 453 2.5E-43 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 Gene3D G3DSA:3.40.50.200 152 491 3.3E-66 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6708 07c40f767a9dfdb5dab0e5a8292691b3 506 SUPERFAMILY SSF52743 167 493 4.84E-62 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8446 0260397b9d7b9dfa871866bf56209151 229 Hamap MF_01389 Urease accessory protein UreG [ureG]. 34 229 41.703 T 19-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMED_8446 0260397b9d7b9dfa871866bf56209151 229 PANTHER PTHR31715 8 227 5.0E-104 T 19-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMED_8446 0260397b9d7b9dfa871866bf56209151 229 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 37 226 1.0E-77 T 19-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMED_8446 0260397b9d7b9dfa871866bf56209151 229 PIRSF PIRSF005624 19 229 1.5E-43 T 19-04-2016 AMED_8446 0260397b9d7b9dfa871866bf56209151 229 SUPERFAMILY SSF52540 27 227 2.3E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8446 0260397b9d7b9dfa871866bf56209151 229 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 38 208 1.1E-32 T 19-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMED_8446 0260397b9d7b9dfa871866bf56209151 229 Gene3D G3DSA:3.40.50.300 34 191 4.6E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0250 7b37b97fd2ce7fbdadc28e720c098c5c 325 Gene3D G3DSA:1.10.1530.10 46 118 2.9E-9 T 19-04-2016 AMED_0250 7b37b97fd2ce7fbdadc28e720c098c5c 325 Gene3D G3DSA:3.30.1370.60 119 236 6.2E-16 T 19-04-2016 AMED_0250 7b37b97fd2ce7fbdadc28e720c098c5c 325 Pfam PF02615 Malate/L-lactate dehydrogenase 219 309 2.3E-9 T 19-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0250 7b37b97fd2ce7fbdadc28e720c098c5c 325 Pfam PF02615 Malate/L-lactate dehydrogenase 48 211 1.6E-27 T 19-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0250 7b37b97fd2ce7fbdadc28e720c098c5c 325 SUPERFAMILY SSF89733 46 319 7.19E-41 T 19-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0250 7b37b97fd2ce7fbdadc28e720c098c5c 325 PANTHER PTHR11091 15 325 9.9E-30 T 19-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 PANTHER PTHR10882 3 33 2.3E-33 T 19-04-2016 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 PANTHER PTHR10882 57 171 2.3E-33 T 19-04-2016 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 Gene3D G3DSA:3.40.1010.10 1 142 1.8E-39 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 221 8.6E-28 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 250 3.5E-103 T 19-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 SUPERFAMILY SSF53790 1 250 1.28E-33 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 Gene3D G3DSA:3.30.950.10 143 252 2.9E-43 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 PIRSF PIRSF036525 1 253 1.0E-106 T 19-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 PANTHER PTHR10882:SF1 3 33 2.3E-33 T 19-04-2016 AMED_6899 3c1ea5d282845c9eff9d282175a8722c 253 PANTHER PTHR10882:SF1 57 171 2.3E-33 T 19-04-2016 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 SMART SM00347 28 126 9.6E-20 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 Gene3D G3DSA:1.10.10.10 3 139 1.4E-42 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 SUPERFAMILY SSF46785 5 138 1.57E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 PANTHER PTHR33164 3 140 9.3E-52 T 19-04-2016 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 Pfam PF01047 MarR family 35 93 1.9E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 PANTHER PTHR33164:SF5 3 140 9.3E-52 T 19-04-2016 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 2.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 2.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2947 05cc8a9c8c7058087b3125ae9d9c832a 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 2.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 Gene3D G3DSA:3.40.1410.10 73 240 2.0E-27 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 Gene3D G3DSA:1.10.10.10 5 72 2.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 3.6E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 SMART SM00866 106 239 3.0E-10 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 SUPERFAMILY SSF46785 4 88 5.2E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 PANTHER PTHR38445:SF2 2 85 4.0E-15 T 19-04-2016 AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 SUPERFAMILY SSF64288 61 241 3.66E-23 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 Pfam PF07702 UTRA domain 108 237 6.9E-17 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 PANTHER PTHR38445 2 85 4.0E-15 T 19-04-2016 AMED_2183 939a40de1dea2b3a9ff9cd8085a4eae1 249 SMART SM00345 14 73 4.6E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8198 5cb3566a3f5c1e22edc4b69d01d01db8 169 PANTHER PTHR37163:SF1 13 159 7.7E-43 T 19-04-2016 AMED_8198 5cb3566a3f5c1e22edc4b69d01d01db8 169 Pfam PF04417 Protein of unknown function (DUF501) 35 154 2.9E-35 T 19-04-2016 IPR007511 Protein of unknown function DUF501 AMED_8198 5cb3566a3f5c1e22edc4b69d01d01db8 169 PANTHER PTHR37163 13 159 7.7E-43 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 PANTHER PTHR18964:SF123 65 381 6.5E-58 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 Pfam PF00480 ROK family 89 380 2.5E-42 T 19-04-2016 IPR000600 ROK family AMED_2985 e92e55e327493bc56ff1770a727800ad 399 Gene3D G3DSA:3.30.420.40 226 361 9.7E-40 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 SUPERFAMILY SSF46785 15 80 5.71E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2985 e92e55e327493bc56ff1770a727800ad 399 Gene3D G3DSA:3.30.420.40 83 225 1.3E-36 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 SUPERFAMILY SSF53067 86 387 1.85E-48 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 Pfam PF12802 MarR family 14 65 8.1E-7 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 PANTHER PTHR18964 65 381 6.5E-58 T 19-04-2016 AMED_2985 e92e55e327493bc56ff1770a727800ad 399 Gene3D G3DSA:1.10.10.10 15 82 1.1E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4756 00acef1ef3e9b58657d8e2edd2557447 363 Gene3D G3DSA:3.40.630.30 176 298 5.5E-7 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4756 00acef1ef3e9b58657d8e2edd2557447 363 TIGRFAM TIGR01686 FkbH: FkbH domain 1 308 1.2E-91 T 19-04-2016 IPR010037 FkbH domain AMED_4756 00acef1ef3e9b58657d8e2edd2557447 363 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 2 111 1.0E-13 T 19-04-2016 IPR010033 HAD-superfamily phosphatase, subfamily IIIC AMED_4756 00acef1ef3e9b58657d8e2edd2557447 363 Gene3D G3DSA:3.40.50.1000 1 117 4.3E-17 T 19-04-2016 IPR023214 HAD-like domain AMED_4756 00acef1ef3e9b58657d8e2edd2557447 363 SUPERFAMILY SSF56784 2 104 5.51E-11 T 19-04-2016 IPR023214 HAD-like domain AMED_4756 00acef1ef3e9b58657d8e2edd2557447 363 SUPERFAMILY SSF55729 177 310 7.02E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6916 632fcf43b2578a89204f116bb0675fed 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 PANTHER PTHR30146:SF4 1 333 1.5E-107 T 19-04-2016 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 SUPERFAMILY SSF47413 4 49 3.99E-11 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 Gene3D G3DSA:3.40.50.2300 171 331 7.8E-53 T 19-04-2016 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 SMART SM00354 2 69 2.7E-17 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 Pfam PF13377 Periplasmic binding protein-like domain 171 330 2.2E-40 T 19-04-2016 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 PANTHER PTHR30146 1 333 1.5E-107 T 19-04-2016 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 Gene3D G3DSA:1.10.260.40 4 48 1.6E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 47 6.7E-13 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 Gene3D G3DSA:3.40.50.2300 56 170 3.2E-23 T 19-04-2016 AMED_6916 632fcf43b2578a89204f116bb0675fed 335 SUPERFAMILY SSF53822 59 331 3.53E-68 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4151 12f496a5f757cde29f433b320f8071e4 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 1.2E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4151 12f496a5f757cde29f433b320f8071e4 189 SUPERFAMILY SSF48498 80 186 2.36E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4151 12f496a5f757cde29f433b320f8071e4 189 SUPERFAMILY SSF46689 5 84 8.21E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4151 12f496a5f757cde29f433b320f8071e4 189 Gene3D G3DSA:1.10.357.10 3 187 3.6E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4151 12f496a5f757cde29f433b320f8071e4 189 PANTHER PTHR30328:SF4 13 187 5.1E-33 T 19-04-2016 AMED_4151 12f496a5f757cde29f433b320f8071e4 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4151 12f496a5f757cde29f433b320f8071e4 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4151 12f496a5f757cde29f433b320f8071e4 189 PANTHER PTHR30328 13 187 5.1E-33 T 19-04-2016 AMED_4098 0feeb4792c4b2b4034dbf4e4996e2945 279 Gene3D G3DSA:3.90.25.10 176 269 3.2E-9 T 19-04-2016 AMED_4098 0feeb4792c4b2b4034dbf4e4996e2945 279 PANTHER PTHR10366:SF344 2 268 6.3E-40 T 19-04-2016 AMED_4098 0feeb4792c4b2b4034dbf4e4996e2945 279 PANTHER PTHR10366 2 268 6.3E-40 T 19-04-2016 AMED_4098 0feeb4792c4b2b4034dbf4e4996e2945 279 Gene3D G3DSA:3.40.50.720 1 175 1.1E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4098 0feeb4792c4b2b4034dbf4e4996e2945 279 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 196 7.9E-12 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4098 0feeb4792c4b2b4034dbf4e4996e2945 279 SUPERFAMILY SSF51735 1 270 1.54E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3255 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:2.40.50.140 222 341 4.7E-39 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_3255 209952760da303dda4a56587991e757f 670 SUPERFAMILY SSF56091 10 217 1.56E-40 T 19-04-2016 AMED_3255 209952760da303dda4a56587991e757f 670 PANTHER PTHR10459 9 340 3.8E-43 T 19-04-2016 AMED_3255 209952760da303dda4a56587991e757f 670 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 27 657 3.4E-140 T 19-04-2016 IPR014143 DNA ligase D AMED_3255 209952760da303dda4a56587991e757f 670 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 26 340 1.5E-69 T 19-04-2016 IPR014146 DNA ligase D, ligase domain AMED_3255 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:3.30.1490.70 176 217 5.6E-16 T 19-04-2016 AMED_3255 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:3.30.1490.70 10 38 5.6E-16 T 19-04-2016 AMED_3255 209952760da303dda4a56587991e757f 670 PANTHER PTHR10459:SF70 9 340 3.8E-43 T 19-04-2016 AMED_3255 209952760da303dda4a56587991e757f 670 Pfam PF01068 ATP dependent DNA ligase domain 28 217 1.4E-27 T 19-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_3255 209952760da303dda4a56587991e757f 670 Gene3D G3DSA:3.30.470.30 39 157 1.2E-21 T 19-04-2016 AMED_3255 209952760da303dda4a56587991e757f 670 Pfam PF04679 ATP dependent DNA ligase C terminal region 240 335 2.4E-24 T 19-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_3255 209952760da303dda4a56587991e757f 670 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 389 633 5.9E-82 T 19-04-2016 IPR014145 DNA ligase D, polymerase domain AMED_3255 209952760da303dda4a56587991e757f 670 SUPERFAMILY SSF50249 222 341 2.46E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 Gene3D G3DSA:3.20.20.10 3 232 9.6E-80 T 19-04-2016 IPR029066 PLP-binding barrel AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 79 93 - T 19-04-2016 IPR011078 Uncharacterised protein family UPF0001 AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 SUPERFAMILY SSF51419 4 230 2.56E-63 T 19-04-2016 IPR029066 PLP-binding barrel AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 PANTHER PTHR10146 3 232 9.0E-70 T 19-04-2016 IPR011078 Uncharacterised protein family UPF0001 AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 Pfam PF01168 Alanine racemase, N-terminal domain 12 232 1.7E-19 T 19-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 9 232 5.4E-42 T 19-04-2016 IPR011078 Uncharacterised protein family UPF0001 AMED_2957 9a7ffcf9a8634c2125ba09c5b7050bc4 237 PIRSF PIRSF004848 1 236 7.3E-63 T 19-04-2016 IPR011078 Uncharacterised protein family UPF0001 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 305 2.7E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PANTHER PTHR22912:SF180 1 383 6.2E-115 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 Gene3D G3DSA:3.30.390.30 324 402 1.4E-23 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 Gene3D G3DSA:3.50.50.60 1 105 4.1E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 SUPERFAMILY SSF51905 1 315 4.11E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PANTHER PTHR22912 1 383 6.2E-115 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 SUPERFAMILY SSF55424 317 401 2.33E-18 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 3.7E-19 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.7E-19 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.7E-19 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.7E-19 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 Pfam PF14759 Reductase C-terminal 324 400 3.3E-10 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 3.8E-29 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 3.8E-29 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.8E-29 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 3.8E-29 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 3.8E-29 T 19-04-2016 AMED_1829 6429cb16e1039a5f5d25bcc7e1832879 407 Gene3D G3DSA:3.50.50.60 106 314 1.5E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 PANTHER PTHR10366:SF401 252 292 1.2E-80 T 19-04-2016 AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 PANTHER PTHR10366:SF401 2 231 1.2E-80 T 19-04-2016 AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 Pfam PF13460 NAD(P)H-binding 7 191 1.2E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 PANTHER PTHR10366 252 292 1.2E-80 T 19-04-2016 AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 PANTHER PTHR10366 2 231 1.2E-80 T 19-04-2016 AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 SUPERFAMILY SSF51735 1 277 7.43E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5865 a6b3c7433e228a5180b637ba5ab83f9d 298 Gene3D G3DSA:3.40.50.720 1 215 1.3E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 PANTHER PTHR10314:SF21 32 186 1.2E-252 T 19-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 PANTHER PTHR10314:SF21 203 450 1.2E-252 T 19-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 Gene3D G3DSA:3.40.50.1100 239 417 8.5E-13 T 19-04-2016 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 PIRSF PIRSF001413 10 434 2.5E-115 T 19-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 106 120 - T 19-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 14 429 4.6E-190 T 19-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 22 428 39.59 T 19-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 SUPERFAMILY SSF53686 28 426 1.7E-108 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 77 415 3.6E-44 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 Gene3D G3DSA:3.40.50.1100 56 238 7.4E-51 T 19-04-2016 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 PANTHER PTHR10314 32 186 1.2E-252 T 19-04-2016 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 PANTHER PTHR10314 203 450 1.2E-252 T 19-04-2016 AMED_7001 67684ef9bdab5ac914ceb2c92630f357 450 PIRSF PIRSF500824 2 437 5.5E-199 T 19-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 Gene3D G3DSA:3.90.20.20 70 141 3.8E-18 T 19-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 PANTHER PTHR21237 70 212 1.9E-38 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 SUPERFAMILY SSF58014 70 152 1.06E-16 T 19-04-2016 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 Pfam PF01025 GrpE 70 207 1.0E-32 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 187 206 2.5E-25 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 85 101 2.5E-25 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 113 128 2.5E-25 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 PRINTS PR00773 GrpE protein signature 160 175 2.5E-25 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 ProSitePatterns PS01071 grpE protein signature. 163 206 - T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 Gene3D G3DSA:2.30.22.10 152 208 4.4E-21 T 19-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 SUPERFAMILY SSF51064 154 209 6.15E-16 T 19-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 AMED_9165 ba9f8d8513dfec45df3c96656554698e 235 Hamap MF_01151 Protein GrpE [grpE]. 6 208 16.877 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_1408 81b1bed522bb2aeb1a5f0fe130952d79 297 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 22 262 7.2E-57 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_1408 81b1bed522bb2aeb1a5f0fe130952d79 297 Gene3D G3DSA:3.20.20.30 1 266 1.1E-57 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1408 81b1bed522bb2aeb1a5f0fe130952d79 297 PANTHER PTHR30011 20 260 7.2E-42 T 19-04-2016 AMED_1408 81b1bed522bb2aeb1a5f0fe130952d79 297 Pfam PF00296 Luciferase-like monooxygenase 14 261 3.9E-43 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1408 81b1bed522bb2aeb1a5f0fe130952d79 297 PANTHER PTHR30011:SF5 20 260 7.2E-42 T 19-04-2016 AMED_1408 81b1bed522bb2aeb1a5f0fe130952d79 297 SUPERFAMILY SSF51679 2 293 8.51E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0386 5f2eed30063ff60730e25129b84772b0 191 Gene3D G3DSA:1.10.10.60 5 52 6.1E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0386 5f2eed30063ff60730e25129b84772b0 191 SUPERFAMILY SSF46689 6 64 7.48E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0386 5f2eed30063ff60730e25129b84772b0 191 Pfam PF16859 Bacterial transcriptional repressor C-terminal 71 173 1.7E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0386 5f2eed30063ff60730e25129b84772b0 191 PANTHER PTHR30055 1 175 1.8E-37 T 19-04-2016 AMED_0386 5f2eed30063ff60730e25129b84772b0 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 59 3.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0386 5f2eed30063ff60730e25129b84772b0 191 Gene3D G3DSA:1.10.357.10 54 181 4.6E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0386 5f2eed30063ff60730e25129b84772b0 191 SUPERFAMILY SSF48498 72 177 9.12E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0386 5f2eed30063ff60730e25129b84772b0 191 PANTHER PTHR30055:SF67 1 175 1.8E-37 T 19-04-2016 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 PANTHER PTHR11070:SF4 676 1012 5.5E-166 T 19-04-2016 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 PANTHER PTHR11070:SF4 588 655 5.5E-166 T 19-04-2016 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Pfam PF13361 UvrD-like helicase C-terminal domain 567 700 3.4E-13 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 PANTHER PTHR11070 1 571 5.5E-166 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 PANTHER PTHR11070 588 655 5.5E-166 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:3.40.50.300 342 435 1.4E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:3.40.50.300 615 717 1.4E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 PANTHER PTHR11070 676 1012 5.5E-166 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:3.40.50.300 12 160 8.1E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Gene3D G3DSA:3.40.50.300 201 308 8.1E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 SUPERFAMILY SSF52540 12 717 3.96E-84 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Pfam PF12705 PD-(D/E)XK nuclease superfamily 801 1046 1.1E-39 T 19-04-2016 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 Pfam PF00580 UvrD/REP helicase N-terminal domain 21 308 6.4E-33 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMED_1133 d172aff9eab37cfa2046652c5de9d24f 1057 PANTHER PTHR11070:SF4 1 571 5.5E-166 T 19-04-2016 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 SMART SM00862 15 89 9.9E-11 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 Gene3D G3DSA:3.40.50.300 322 398 5.5E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 Gene3D G3DSA:3.40.50.300 464 492 5.5E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 SUPERFAMILY SSF48452 91 249 4.25E-28 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 PANTHER PTHR35807 1 324 3.7E-50 T 19-04-2016 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 Pfam PF05729 NACHT domain 322 477 1.6E-7 T 19-04-2016 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 Pfam PF03704 Bacterial transcriptional activator domain 96 240 3.8E-36 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 SUPERFAMILY SSF46894 2 89 2.61E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 SMART SM01043 96 240 1.1E-37 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 89 4.1E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 Gene3D G3DSA:1.10.10.10 8 90 5.0E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4014 8d94a9310b12cfbae81e9bc34f39f9bd 902 SUPERFAMILY SSF52540 321 484 1.08E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 Pfam PF00296 Luciferase-like monooxygenase 24 389 6.0E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 SUPERFAMILY SSF51679 1 436 2.88E-105 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 PIRSF PIRSF000337 1 436 1.5E-143 T 19-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 PANTHER PTHR30011:SF18 1 435 5.0E-126 T 19-04-2016 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 PANTHER PTHR30011 1 435 5.0E-126 T 19-04-2016 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 Gene3D G3DSA:3.20.20.30 355 436 1.5E-112 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 Gene3D G3DSA:3.20.20.30 2 303 1.5E-112 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0575 dde48e3f91ed66b0aa672b92e69ab2d0 436 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 15 434 1.3E-125 T 19-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946 308 333 0.0 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946 218 277 0.0 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946 371 536 0.0 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946 1 170 0.0 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946 711 946 0.0 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946 562 679 0.0 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 256 269 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 285 304 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 150 167 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 632 654 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 223 239 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 665 675 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PRINTS PR00985 Leucyl-tRNA synthetase signature 580 598 4.5E-54 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:1.10.730.10 744 882 8.4E-36 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF47323 758 945 4.67E-34 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.40.50.620 714 743 1.2E-137 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_9330 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.40.50.620 505 681 1.2E-137 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_9330 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.40.50.620 21 169 1.2E-137 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_9330 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.40.50.620 217 292 1.2E-137 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_9330 c231484715603a107b426f8976f107d5 946 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 497 527 1.1E-4 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF50677 296 495 1.03E-46 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF52374 21 170 1.15E-111 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF52374 218 296 1.15E-111 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 SUPERFAMILY SSF52374 496 763 1.15E-111 T 19-04-2016 AMED_9330 c231484715603a107b426f8976f107d5 946 Pfam PF08264 Anticodon-binding domain of tRNA 795 910 4.6E-15 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 Pfam PF09334 tRNA synthetases class I (M) 62 166 5.7E-13 T 19-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 291 483 1.9E-59 T 19-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946:SF7 308 333 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946:SF7 218 277 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946:SF7 371 536 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946:SF7 1 170 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946:SF7 711 946 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 PANTHER PTHR11946:SF7 562 679 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 Gene3D G3DSA:3.90.740.10 293 504 1.2E-51 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_9330 c231484715603a107b426f8976f107d5 946 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 217 946 1.2E-219 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_9330 c231484715603a107b426f8976f107d5 946 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 16 946 21.407 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 SMART SM00020 26 245 1.1E-7 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 Gene3D G3DSA:2.40.10.10 129 249 1.5E-12 T 19-04-2016 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 SUPERFAMILY SSF50494 8 250 6.48E-33 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 Pfam PF00089 Trypsin 29 245 1.0E-17 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 Gene3D G3DSA:2.40.10.10 69 128 1.6E-12 T 19-04-2016 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 72 77 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 Gene3D G3DSA:2.40.10.10 28 68 1.6E-8 T 19-04-2016 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 PANTHER PTHR24260 1 250 2.9E-16 T 19-04-2016 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 62 77 1.0E-7 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 196 208 1.0E-7 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0059 7cf61cbb46a1e5724cbe7a90a2795cad 250 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 118 132 1.0E-7 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_4679 27bf7c2656202fce937b66ff1e6a53dd 162 SUPERFAMILY SSF55961 2 143 5.96E-34 T 19-04-2016 AMED_4679 27bf7c2656202fce937b66ff1e6a53dd 162 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 17 140 2.5E-21 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_4679 27bf7c2656202fce937b66ff1e6a53dd 162 Gene3D G3DSA:3.30.530.20 2 142 7.3E-39 T 19-04-2016 IPR023393 START-like domain AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 202 223 890.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 224 246 24.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 256 277 840.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 326 347 5200.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 386 411 9600.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 179 201 610.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SMART SM00710 300 320 8600.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 PANTHER PTHR31339:SF0 38 400 3.8E-64 T 19-04-2016 AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 Pfam PF00295 Glycosyl hydrolases family 28 134 358 1.9E-9 T 19-04-2016 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 PANTHER PTHR31339 38 400 3.8E-64 T 19-04-2016 AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 Pfam PF12708 Pectate lyase superfamily protein 40 106 3.0E-12 T 19-04-2016 IPR024535 Pectate lyase superfamily protein AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 Gene3D G3DSA:2.160.20.10 287 505 3.3E-98 T 19-04-2016 IPR012334 Pectin lyase fold AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 Gene3D G3DSA:2.160.20.10 32 247 3.3E-98 T 19-04-2016 IPR012334 Pectin lyase fold AMED_7821 a5ee4f7ca62cb339b63277f455ea030f 516 SUPERFAMILY SSF51126 38 401 1.11E-64 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_0202 8b611e6bbf563e07c611ef445810a624 398 SUPERFAMILY SSF53756 2 389 3.93E-58 T 19-04-2016 AMED_0202 8b611e6bbf563e07c611ef445810a624 398 Gene3D G3DSA:3.40.50.2000 176 365 6.1E-16 T 19-04-2016 AMED_0202 8b611e6bbf563e07c611ef445810a624 398 PANTHER PTHR12526 1 393 8.1E-40 T 19-04-2016 AMED_0202 8b611e6bbf563e07c611ef445810a624 398 Pfam PF13579 Glycosyl transferase 4-like domain 15 145 8.8E-18 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_0202 8b611e6bbf563e07c611ef445810a624 398 Gene3D G3DSA:3.40.50.2000 14 126 9.0E-9 T 19-04-2016 AMED_0202 8b611e6bbf563e07c611ef445810a624 398 Pfam PF13692 Glycosyl transferases group 1 215 355 1.8E-18 T 19-04-2016 AMED_4407 f05113d24b3a28c44ad4399f9f798273 406 PANTHER PTHR32196 250 403 8.7E-96 T 19-04-2016 AMED_4407 f05113d24b3a28c44ad4399f9f798273 406 PANTHER PTHR32196 14 174 8.7E-96 T 19-04-2016 AMED_4407 f05113d24b3a28c44ad4399f9f798273 406 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 394 6.3E-40 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_4407 f05113d24b3a28c44ad4399f9f798273 406 PANTHER PTHR32196:SF21 250 403 8.7E-96 T 19-04-2016 AMED_4407 f05113d24b3a28c44ad4399f9f798273 406 PANTHER PTHR32196:SF21 14 174 8.7E-96 T 19-04-2016 AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 Gene3D G3DSA:3.40.50.720 2 231 1.1E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 PANTHER PTHR11092 1 278 3.1E-100 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 PANTHER PTHR11092:SF0 1 278 3.1E-100 T 19-04-2016 AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 1 278 6.6E-86 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 Pfam PF08338 Domain of unknown function (DUF1731) 234 280 1.3E-15 T 19-04-2016 IPR013549 Domain of unknown function DUF1731 AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 110 3.1E-8 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_2166 647e9778c40a172e1a010f8cca8164a0 281 SUPERFAMILY SSF51735 2 276 1.83E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 Pfam PF02374 Anion-transporting ATPase 16 288 1.5E-26 T 19-04-2016 IPR025723 Anion-transporting ATPase-like domain AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 PANTHER PTHR10803:SF0 206 294 9.9E-53 T 19-04-2016 AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 SUPERFAMILY SSF52540 227 289 5.63E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 SUPERFAMILY SSF52540 16 185 5.63E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 PANTHER PTHR10803:SF0 4 189 9.9E-53 T 19-04-2016 AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 PANTHER PTHR10803:SF0 322 368 9.9E-53 T 19-04-2016 AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 PANTHER PTHR10803 4 189 9.9E-53 T 19-04-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 PANTHER PTHR10803 322 368 9.9E-53 T 19-04-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 Gene3D G3DSA:3.40.50.300 15 173 2.4E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 Gene3D G3DSA:3.40.50.300 214 290 2.4E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8851 a0b4a800f7239e960806ac6f305ec211 373 PANTHER PTHR10803 206 294 9.9E-53 T 19-04-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 AMED_6411 88e51150655954dc92096b3376755bb5 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 3.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6411 88e51150655954dc92096b3376755bb5 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 3.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6411 88e51150655954dc92096b3376755bb5 185 Pfam PF16925 Bacterial transcriptional repressor C-terminal 88 180 2.1E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6411 88e51150655954dc92096b3376755bb5 185 PANTHER PTHR30055 3 182 5.6E-30 T 19-04-2016 AMED_6411 88e51150655954dc92096b3376755bb5 185 Gene3D G3DSA:1.10.357.10 3 182 9.6E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6411 88e51150655954dc92096b3376755bb5 185 SUPERFAMILY SSF48498 74 182 2.11E-21 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6411 88e51150655954dc92096b3376755bb5 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 2.7E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6411 88e51150655954dc92096b3376755bb5 185 SUPERFAMILY SSF46689 3 78 3.85E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0159 548d66ceca5515780e5eb504808ba47c 214 PANTHER PTHR30136 3 209 1.4E-22 T 19-04-2016 AMED_0159 548d66ceca5515780e5eb504808ba47c 214 Gene3D G3DSA:3.30.450.40 80 144 2.5E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_0159 548d66ceca5515780e5eb504808ba47c 214 SUPERFAMILY SSF55781 65 209 1.63E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_0159 548d66ceca5515780e5eb504808ba47c 214 Pfam PF09339 IclR helix-turn-helix domain 9 61 4.6E-11 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_0159 548d66ceca5515780e5eb504808ba47c 214 Gene3D G3DSA:1.10.10.10 3 74 1.4E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0159 548d66ceca5515780e5eb504808ba47c 214 SUPERFAMILY SSF46785 9 78 1.3E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0159 548d66ceca5515780e5eb504808ba47c 214 SMART SM00346 7 94 1.4E-12 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_0159 548d66ceca5515780e5eb504808ba47c 214 PANTHER PTHR30136:SF14 3 209 1.4E-22 T 19-04-2016 AMED_0159 548d66ceca5515780e5eb504808ba47c 214 Gene3D G3DSA:3.30.450.40 151 207 1.8E-4 T 19-04-2016 IPR029016 GAF domain-like AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 3.9E-22 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 3.9E-22 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 90 108 3.9E-22 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.9E-22 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 3.9E-22 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 91 99 4.9E-14 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 154 4.9E-14 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 4.9E-14 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 4.9E-14 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 SUPERFAMILY SSF51905 3 311 4.02E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PIRSF PIRSF037495 1 425 2.4E-113 T 19-04-2016 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PANTHER PTHR22912:SF141 4 325 5.1E-59 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 Gene3D G3DSA:3.50.50.60 93 309 2.5E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 Pfam PF04324 BFD-like [2Fe-2S] binding domain 350 400 2.8E-8 T 19-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain AMED_3234 0643f23248c5fae84b8eace90dded88c 427 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 300 1.0E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 PANTHER PTHR22912 4 325 5.1E-59 T 19-04-2016 AMED_3234 0643f23248c5fae84b8eace90dded88c 427 Gene3D G3DSA:3.50.50.60 3 92 1.6E-14 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 PANTHER PTHR30328 3 159 4.9E-34 T 19-04-2016 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 SUPERFAMILY SSF48498 81 189 1.67E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.7E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 Gene3D G3DSA:1.10.357.10 13 181 7.9E-26 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 7.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 7.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 PANTHER PTHR30328:SF24 3 159 4.9E-34 T 19-04-2016 AMED_3997 61320ca7f8a1123ebef3623c78de9c9a 195 SUPERFAMILY SSF46689 6 76 4.51E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0860 649773be62137f8d895cd72479bdac35 425 PANTHER PTHR10515:SF0 2 425 8.5E-188 T 19-04-2016 AMED_0860 649773be62137f8d895cd72479bdac35 425 SUPERFAMILY SSF52418 75 316 9.42E-82 T 19-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 AMED_0860 649773be62137f8d895cd72479bdac35 425 Gene3D G3DSA:3.40.1030.10 75 317 3.1E-107 T 19-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 AMED_0860 649773be62137f8d895cd72479bdac35 425 Pfam PF00591 Glycosyl transferase family, a/b domain 79 286 3.4E-35 T 19-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 AMED_0860 649773be62137f8d895cd72479bdac35 425 SUPERFAMILY SSF47648 5 72 6.15E-21 T 19-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain AMED_0860 649773be62137f8d895cd72479bdac35 425 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 112 127 - T 19-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 AMED_0860 649773be62137f8d895cd72479bdac35 425 Gene3D G3DSA:1.20.970.10 5 70 1.9E-28 T 19-04-2016 AMED_0860 649773be62137f8d895cd72479bdac35 425 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 336 408 3.1E-20 T 19-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 AMED_0860 649773be62137f8d895cd72479bdac35 425 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 69 1.1E-19 T 19-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain AMED_0860 649773be62137f8d895cd72479bdac35 425 SUPERFAMILY SSF54680 323 423 1.83E-25 T 19-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 AMED_0860 649773be62137f8d895cd72479bdac35 425 PIRSF PIRSF000478 3 424 7.6E-149 T 19-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 AMED_0860 649773be62137f8d895cd72479bdac35 425 Gene3D G3DSA:3.90.1170.30 319 414 1.1E-28 T 19-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 AMED_0860 649773be62137f8d895cd72479bdac35 425 SMART SM00941 335 409 4.3E-29 T 19-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 AMED_0860 649773be62137f8d895cd72479bdac35 425 PANTHER PTHR10515 2 425 8.5E-188 T 19-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 AMED_0860 649773be62137f8d895cd72479bdac35 425 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 7 408 3.3E-162 T 19-04-2016 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|UniPathway: UPA00578 AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 SUPERFAMILY SSF46785 11 106 1.73E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 Pfam PF07729 FCD domain 89 209 5.3E-24 T 19-04-2016 IPR011711 GntR, C-terminal AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 SMART SM00345 20 78 7.5E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 78 2.7E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 PANTHER PTHR11751:SF436 18 104 1.8E-21 T 19-04-2016 AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 SMART SM00895 88 210 5.0E-17 T 19-04-2016 IPR011711 GntR, C-terminal AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 PANTHER PTHR11751 18 104 1.8E-21 T 19-04-2016 AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 Gene3D G3DSA:1.20.120.530 82 215 4.9E-29 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 Gene3D G3DSA:1.10.10.10 6 79 3.7E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8974 61726ee90c927c092b3a28784bb9c30b 234 SUPERFAMILY SSF48008 86 215 2.04E-25 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 PANTHER PTHR33303:SF3 642 873 5.5E-182 T 19-04-2016 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 PANTHER PTHR33303:SF3 103 606 5.5E-182 T 19-04-2016 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF52210 488 633 8.77E-23 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.630.30 18 174 3.8E-26 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.50.720 187 325 1.8E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF13549 ATP-grasp domain 662 872 8.5E-56 T 19-04-2016 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF51735 195 332 1.39E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.50.261 479 623 8.1E-10 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF56059 671 872 2.36E-24 T 19-04-2016 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF55729 22 166 7.38E-26 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 SUPERFAMILY SSF52210 327 485 3.79E-36 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF13380 CoA binding domain 205 329 1.6E-20 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.40.50.261 326 478 1.9E-33 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF00583 Acetyltransferase (GNAT) family 84 159 3.9E-11 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 PANTHER PTHR33303 642 873 5.5E-182 T 19-04-2016 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 PANTHER PTHR33303 103 606 5.5E-182 T 19-04-2016 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 SMART SM00881 200 295 2.0E-35 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 348 481 1.3E-44 T 19-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMED_2419 be98726fcb3e64d39b455a0778a7a7de 893 Gene3D G3DSA:3.30.1490.20 684 756 2.6E-8 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_5230 b231b6fbcc5012517425567c7a4ff057 411 Gene3D G3DSA:3.40.50.1110 213 406 2.0E-36 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_5230 b231b6fbcc5012517425567c7a4ff057 411 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 216 401 2.8E-26 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_5230 b231b6fbcc5012517425567c7a4ff057 411 PANTHER PTHR30383:SF3 57 408 5.8E-95 T 19-04-2016 AMED_5230 b231b6fbcc5012517425567c7a4ff057 411 PANTHER PTHR30383 57 408 5.8E-95 T 19-04-2016 AMED_5230 b231b6fbcc5012517425567c7a4ff057 411 SUPERFAMILY SSF52266 212 406 4.33E-47 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6054 bd297a05836ef91d3be0e669517ba537 125 Gene3D G3DSA:1.10.1900.20 56 117 1.8E-29 T 19-04-2016 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 2 114 5.3E-42 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 PANTHER PTHR10986 2 118 3.0E-62 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 27.859 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 70 1.0E-20 T 19-04-2016 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 PANTHER PTHR10986:SF12 2 118 3.0E-62 T 19-04-2016 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 SUPERFAMILY SSF74731 3 115 2.35E-43 T 19-04-2016 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 PRINTS PR00062 Ribosomal protein L20 signature 42 71 9.3E-38 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 PRINTS PR00062 Ribosomal protein L20 signature 75 101 9.3E-38 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 PRINTS PR00062 Ribosomal protein L20 signature 12 41 9.3E-38 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 Pfam PF00453 Ribosomal protein L20 3 109 5.4E-43 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_6054 bd297a05836ef91d3be0e669517ba537 125 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMED_5363 94a27009f739232ac1e32a59271ff884 539 SUPERFAMILY SSF51126 266 538 6.14E-22 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 395 416 930.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 157 187 6400.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 292 314 1300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 216 238 48.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 370 392 3000.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 265 291 29.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 315 344 1300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 SMART SM00710 346 367 910.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_5363 94a27009f739232ac1e32a59271ff884 539 Pfam PF13229 Right handed beta helix region 219 364 5.8E-9 T 19-04-2016 AMED_5363 94a27009f739232ac1e32a59271ff884 539 SUPERFAMILY SSF51126 14 278 1.75E-16 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4465 53275b517acbee948db2bb1821aeb9ae 454 SUPERFAMILY SSF117074 362 423 3.01E-9 T 19-04-2016 AMED_4465 53275b517acbee948db2bb1821aeb9ae 454 SUPERFAMILY SSF117074 145 225 1.05E-9 T 19-04-2016 AMED_4465 53275b517acbee948db2bb1821aeb9ae 454 Gene3D G3DSA:2.60.40.10 374 424 2.6E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_4465 53275b517acbee948db2bb1821aeb9ae 454 Gene3D G3DSA:2.60.40.10 150 204 6.9E-7 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_0949 4d0dcd984cf330773014b32c6e814b55 368 Gene3D G3DSA:3.30.565.10 277 322 9.8E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0949 4d0dcd984cf330773014b32c6e814b55 368 PANTHER PTHR24421 36 364 4.4E-77 T 19-04-2016 AMED_0949 4d0dcd984cf330773014b32c6e814b55 368 PANTHER PTHR24421:SF26 36 364 4.4E-77 T 19-04-2016 AMED_0949 4d0dcd984cf330773014b32c6e814b55 368 SUPERFAMILY SSF55874 258 362 1.09E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0949 4d0dcd984cf330773014b32c6e814b55 368 Pfam PF07730 Histidine kinase 168 232 4.1E-18 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5300 3c4c680400b10d63e9fece750144365c 198 SUPERFAMILY SSF46929 149 197 1.03E-9 T 19-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMED_5300 3c4c680400b10d63e9fece750144365c 198 PANTHER PTHR33796 2 197 3.7E-68 T 19-04-2016 AMED_5300 3c4c680400b10d63e9fece750144365c 198 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 195 28.473 T 19-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMED_5300 3c4c680400b10d63e9fece750144365c 198 Pfam PF14520 Helix-hairpin-helix domain 71 129 4.6E-13 T 19-04-2016 AMED_5300 3c4c680400b10d63e9fece750144365c 198 SUPERFAMILY SSF47781 65 134 3.38E-18 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_5300 3c4c680400b10d63e9fece750144365c 198 Pfam PF07499 RuvA, C-terminal domain 149 194 1.9E-12 T 19-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMED_5300 3c4c680400b10d63e9fece750144365c 198 Gene3D G3DSA:2.40.50.140 1 64 1.2E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5300 3c4c680400b10d63e9fece750144365c 198 Pfam PF01330 RuvA N terminal domain 1 61 4.9E-19 T 19-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMED_5300 3c4c680400b10d63e9fece750144365c 198 SUPERFAMILY SSF50249 1 62 5.14E-14 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5300 3c4c680400b10d63e9fece750144365c 198 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 177 2.1E-39 T 19-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMED_5300 3c4c680400b10d63e9fece750144365c 198 Gene3D G3DSA:1.10.150.20 68 137 3.5E-24 T 19-04-2016 AMED_5300 3c4c680400b10d63e9fece750144365c 198 Gene3D G3DSA:1.10.8.10 138 198 1.6E-23 T 19-04-2016 AMED_6569 211bb7393763dccc98426fe3c0e24832 366 PANTHER PTHR13794:SF4 7 366 1.4E-64 T 19-04-2016 AMED_6569 211bb7393763dccc98426fe3c0e24832 366 Gene3D G3DSA:3.30.390.10 6 130 1.6E-28 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_6569 211bb7393763dccc98426fe3c0e24832 366 SUPERFAMILY SSF54826 10 129 8.84E-23 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_6569 211bb7393763dccc98426fe3c0e24832 366 Gene3D G3DSA:3.20.20.120 131 366 2.0E-50 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_6569 211bb7393763dccc98426fe3c0e24832 366 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 31 126 2.7E-10 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_6569 211bb7393763dccc98426fe3c0e24832 366 SMART SM00922 145 246 8.3E-17 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_6569 211bb7393763dccc98426fe3c0e24832 366 SUPERFAMILY SSF51604 114 366 2.36E-54 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_6569 211bb7393763dccc98426fe3c0e24832 366 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 101 126 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_6569 211bb7393763dccc98426fe3c0e24832 366 Pfam PF13378 Enolase C-terminal domain-like 150 359 2.6E-51 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_6569 211bb7393763dccc98426fe3c0e24832 366 PANTHER PTHR13794 7 366 1.4E-64 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 SUPERFAMILY SSF52743 358 613 5.89E-52 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 SUPERFAMILY SSF52743 170 200 5.89E-52 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 SUPERFAMILY SSF52743 293 317 5.89E-52 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 359 369 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PANTHER PTHR10795:SF421 358 617 7.6E-49 T 19-04-2016 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PANTHER PTHR10795:SF421 179 221 7.6E-49 T 19-04-2016 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PANTHER PTHR10795 358 617 7.6E-49 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PANTHER PTHR10795 179 221 7.6E-49 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 185 195 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 551 561 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Gene3D G3DSA:3.40.50.200 359 614 2.0E-67 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Gene3D G3DSA:3.40.50.200 176 241 2.0E-67 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 Pfam PF00082 Subtilase family 180 606 6.7E-55 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PRINTS PR00723 Subtilisin serine protease family (S8) signature 180 199 5.1E-13 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PRINTS PR00723 Subtilisin serine protease family (S8) signature 355 368 5.1E-13 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6774 ba9aee07c3a4a627b0e346a6e9bdea20 1077 PRINTS PR00723 Subtilisin serine protease family (S8) signature 550 566 5.1E-13 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 PIRSF PIRSF000103 1 293 1.3E-59 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 PANTHER PTHR22981 1 296 5.7E-75 T 19-04-2016 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 SUPERFAMILY SSF51735 1 158 4.23E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 Gene3D G3DSA:1.10.1040.10 165 294 5.1E-30 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 160 1.6E-41 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 19-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 SUPERFAMILY SSF48179 165 294 8.16E-27 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 287 8.8E-29 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_6207 6e73eeabd186a28379eecd6a9918d3bb 305 Gene3D G3DSA:3.40.50.720 1 163 2.0E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 PANTHER PTHR11579:SF0 82 247 3.4E-46 T 19-04-2016 AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 PANTHER PTHR11579:SF0 1 46 3.4E-46 T 19-04-2016 AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 SUPERFAMILY SSF53335 2 40 3.84E-28 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 SUPERFAMILY SSF53335 78 214 3.84E-28 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 PANTHER PTHR11579 82 247 3.4E-46 T 19-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 PANTHER PTHR11579 1 46 3.4E-46 T 19-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 Gene3D G3DSA:3.40.50.150 11 252 1.2E-49 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0425 1d207c9d90b415c3778a5e2060529da1 393 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 96 215 1.4E-22 T 19-04-2016 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 PANTHER PTHR22573:SF15 1 442 4.7E-149 T 19-04-2016 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 9.4E-41 T 19-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.40.120.10 3 153 6.6E-45 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF55957 356 442 3.14E-21 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF53738 155 254 1.33E-28 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 252 1.1E-18 T 19-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.30.310.50 368 441 2.9E-17 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 441 7.7E-179 T 19-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.40.120.10 174 248 1.4E-29 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 437 4.4E-13 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF53738 4 179 7.06E-46 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 443 44.284 T 19-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 366 1.5E-32 T 19-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 3.0E-14 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 3.0E-14 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 3.0E-14 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 PANTHER PTHR22573 1 442 4.7E-149 T 19-04-2016 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 Gene3D G3DSA:3.40.120.10 249 366 8.0E-33 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 19-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0728 255f0024a567f8eb331b4758aa428e0c 444 SUPERFAMILY SSF53738 256 363 4.71E-29 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 SUPERFAMILY SSF46894 143 213 1.02E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 Pfam PF00072 Response regulator receiver domain 5 118 3.6E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 PANTHER PTHR26402:SF564 3 213 2.3E-83 T 19-04-2016 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 SMART SM00448 3 117 2.7E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 Gene3D G3DSA:3.40.50.2300 3 120 1.1E-32 T 19-04-2016 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 PANTHER PTHR26402 3 213 2.3E-83 T 19-04-2016 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 SUPERFAMILY SSF52172 3 129 5.55E-30 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 206 4.0E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 SMART SM00421 150 207 1.6E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 Gene3D G3DSA:1.10.10.10 121 214 5.6E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 1.8E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 1.8E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2842 7e341d6bacfd5c2290de0370ebe4c2e9 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 1.8E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1627 34371850f60edeec12b4700df6e61913 273 SMART SM00849 75 245 0.001 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1627 34371850f60edeec12b4700df6e61913 273 Pfam PF00753 Metallo-beta-lactamase superfamily 76 232 3.9E-6 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1627 34371850f60edeec12b4700df6e61913 273 SUPERFAMILY SSF56281 56 240 5.11E-27 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1627 34371850f60edeec12b4700df6e61913 273 PANTHER PTHR36839 1 270 8.1E-80 T 19-04-2016 AMED_1627 34371850f60edeec12b4700df6e61913 273 Gene3D G3DSA:3.60.15.10 68 239 1.5E-26 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1627 34371850f60edeec12b4700df6e61913 273 PANTHER PTHR36839:SF1 1 270 8.1E-80 T 19-04-2016 AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 SUPERFAMILY SSF46785 30 88 1.59E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 Pfam PF13649 Methyltransferase domain 167 271 5.1E-9 T 19-04-2016 AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 Gene3D G3DSA:1.10.10.10 36 85 7.1E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 PANTHER PTHR10108 166 334 3.4E-17 T 19-04-2016 AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 SUPERFAMILY SSF53335 150 335 4.93E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 Gene3D G3DSA:3.40.50.150 157 336 2.3E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4774 ecb5bb9edfd9eac756eda7edb99133c9 341 Pfam PF12840 Helix-turn-helix domain 27 82 2.2E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8923 c48d452f8405a806eb9c508b25f472dc 144 SUPERFAMILY SSF103196 12 131 1.24E-24 T 19-04-2016 AMED_8923 c48d452f8405a806eb9c508b25f472dc 144 SMART SM00960 16 106 3.7E-19 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_8923 c48d452f8405a806eb9c508b25f472dc 144 PANTHER PTHR36222 4 132 1.5E-28 T 19-04-2016 AMED_8923 c48d452f8405a806eb9c508b25f472dc 144 Gene3D G3DSA:3.30.450.30 12 130 1.6E-19 T 19-04-2016 AMED_8923 c48d452f8405a806eb9c508b25f472dc 144 Pfam PF03259 Roadblock/LC7 domain 16 105 2.7E-13 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 Gene3D G3DSA:1.10.630.10 13 406 1.2E-104 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 352 361 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 SUPERFAMILY SSF48264 18 392 3.54E-82 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 Pfam PF00067 Cytochrome P450 184 270 7.0E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 Pfam PF00067 Cytochrome P450 285 387 5.4E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 284 295 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 92 103 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 142 158 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 159 174 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 350 359 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 301 328 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 202 224 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 329 344 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PRINTS PR00359 B-class P450 signature 359 370 1.6E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4410 0b5b5f9600a4ee317ebde1faaea5e72b 407 PANTHER PTHR11712 4 406 3.3E-82 T 19-04-2016 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 PANTHER PTHR14218 610 643 1.9E-62 T 19-04-2016 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 PANTHER PTHR14218 1 588 1.9E-62 T 19-04-2016 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 SUPERFAMILY SSF52743 235 637 1.44E-52 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 SMART SM00944 41 182 8.7E-44 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 Gene3D G3DSA:3.40.50.200 237 637 1.5E-80 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 SUPERFAMILY SSF54897 30 185 2.72E-37 T 19-04-2016 IPR009020 Proteinase inhibitor, propeptide AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 Pfam PF09286 Pro-kumamolisin, activation domain 45 181 1.4E-30 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 540 550 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_1535 9f64164c19fd6ac11e4bdd3ca80b7931 643 Pfam PF00082 Subtilase family 320 556 1.8E-10 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 Gene3D G3DSA:2.40.110.10 122 217 6.9E-34 T 19-04-2016 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 PANTHER PTHR10909:SF305 1 380 2.5E-144 T 19-04-2016 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 SUPERFAMILY SSF47203 225 378 2.74E-49 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 PANTHER PTHR10909 1 380 2.5E-144 T 19-04-2016 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 SUPERFAMILY SSF56645 2 238 2.88E-55 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 1.0E-13 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 Gene3D G3DSA:1.10.540.10 1 119 1.8E-17 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 213 1.0E-22 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 Gene3D G3DSA:1.20.140.10 218 377 2.2E-58 T 19-04-2016 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 1.4E-47 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8367 774c19e23c178ef9f33169e0a01abe51 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 PANTHER PTHR13789:SF192 5 379 2.0E-71 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.1E-19 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 297 1.1E-19 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 1.1E-19 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 266 281 1.1E-19 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 PANTHER PTHR13789 5 379 2.0E-71 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 SUPERFAMILY SSF54373 169 263 1.49E-23 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 SUPERFAMILY SSF51905 253 342 1.05E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 SUPERFAMILY SSF51905 5 166 1.05E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 Gene3D G3DSA:3.50.50.60 7 150 5.5E-11 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 Gene3D G3DSA:3.30.9.10 151 287 8.6E-41 T 19-04-2016 AMED_1292 b2dee15d9069c0080fde6026422770ca 380 Pfam PF01494 FAD binding domain 5 328 2.1E-46 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_7071 3535e8f5d088f090287f868ba81010b6 363 Gene3D G3DSA:3.40.140.10 221 347 5.3E-22 T 19-04-2016 AMED_7071 3535e8f5d088f090287f868ba81010b6 363 PANTHER PTHR11079 212 357 4.3E-13 T 19-04-2016 AMED_7071 3535e8f5d088f090287f868ba81010b6 363 SUPERFAMILY SSF53597 3 189 1.44E-37 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7071 3535e8f5d088f090287f868ba81010b6 363 Pfam PF01872 RibD C-terminal domain 5 192 8.9E-39 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_7071 3535e8f5d088f090287f868ba81010b6 363 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 226 321 1.4E-17 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMED_7071 3535e8f5d088f090287f868ba81010b6 363 Gene3D G3DSA:3.40.430.10 3 214 1.8E-49 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7071 3535e8f5d088f090287f868ba81010b6 363 SUPERFAMILY SSF53927 222 347 5.69E-27 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_7957 f8cc4896359ef55b63d43549e313c38c 227 Gene3D G3DSA:1.10.3720.10 19 211 2.1E-26 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7957 f8cc4896359ef55b63d43549e313c38c 227 PANTHER PTHR30177:SF4 19 217 2.5E-47 T 19-04-2016 AMED_7957 f8cc4896359ef55b63d43549e313c38c 227 PANTHER PTHR30177 19 217 2.5E-47 T 19-04-2016 AMED_7957 f8cc4896359ef55b63d43549e313c38c 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 214 7.5E-22 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7957 f8cc4896359ef55b63d43549e313c38c 227 SUPERFAMILY SSF161098 19 203 8.63E-33 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 SUPERFAMILY SSF50129 6 148 7.39E-31 T 19-04-2016 IPR011032 GroES-like AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 SUPERFAMILY SSF51735 115 264 1.86E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 87 8.3E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Pfam PF13602 Zinc-binding dehydrogenase 199 279 1.3E-10 T 19-04-2016 AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 PANTHER PTHR11695 13 284 2.6E-109 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 SMART SM00829 8 287 9.4E-18 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 PANTHER PTHR11695:SF533 13 284 2.6E-109 T 19-04-2016 AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Gene3D G3DSA:3.40.50.720 149 232 8.8E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3112 30d5cf0ea2fa32e349be71bd82a1a6e5 290 Gene3D G3DSA:3.90.180.10 13 148 3.8E-37 T 19-04-2016 IPR011032 GroES-like AMED_0174 2c87b86ef92aefd0cc133f68f60db2e6 105 SUPERFAMILY SSF101386 4 105 4.71E-28 T 19-04-2016 AMED_0174 2c87b86ef92aefd0cc133f68f60db2e6 105 Gene3D G3DSA:1.10.287.1080 2 95 5.0E-21 T 19-04-2016 AMED_0174 2c87b86ef92aefd0cc133f68f60db2e6 105 PIRSF PIRSF029826 1 105 2.1E-36 T 19-04-2016 IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 AMED_0174 2c87b86ef92aefd0cc133f68f60db2e6 105 PANTHER PTHR14552:SF12 2 102 2.8E-31 T 19-04-2016 AMED_0174 2c87b86ef92aefd0cc133f68f60db2e6 105 Pfam PF12643 MazG-like family 32 99 1.1E-7 T 19-04-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 AMED_0174 2c87b86ef92aefd0cc133f68f60db2e6 105 PANTHER PTHR14552 2 102 2.8E-31 T 19-04-2016 AMED_9201 6177eb7c55cab25fb6115374c70d2a16 691 Pfam PF04294 VanW like protein 487 616 7.8E-32 T 19-04-2016 IPR007391 Vancomycin resistance VanW AMED_9201 6177eb7c55cab25fb6115374c70d2a16 691 Pfam PF12229 Putative peptidoglycan binding domain 355 443 1.9E-9 T 19-04-2016 IPR022029 Putative peptidoglycan binding domain AMED_9201 6177eb7c55cab25fb6115374c70d2a16 691 PANTHER PTHR35788 110 619 4.7E-29 T 19-04-2016 AMED_9201 6177eb7c55cab25fb6115374c70d2a16 691 PANTHER PTHR35788:SF1 110 619 4.7E-29 T 19-04-2016 AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 PANTHER PTHR33307:SF5 1 852 2.9E-264 T 19-04-2016 AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 162 321 9.6E-47 T 19-04-2016 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 Gene3D G3DSA:2.60.120.260 320 431 2.1E-16 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 PIRSF PIRSF010631 1 872 5.3E-277 T 19-04-2016 IPR016007 Alpha-L-rhamnosidase AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 SUPERFAMILY SSF48208 435 841 7.06E-46 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 Pfam PF05592 Bacterial alpha-L-rhamnosidase 331 835 1.9E-174 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_5769 bfbd43993561e9c9f279a6974587bdc1 875 PANTHER PTHR33307 1 852 2.9E-264 T 19-04-2016 AMED_6099 ef0cd6c4200c966ef31acb2e2eec895b 247 Pfam PF03649 Uncharacterised protein family (UPF0014) 12 238 9.3E-48 T 19-04-2016 IPR005226 UPF0014 family AMED_6099 ef0cd6c4200c966ef31acb2e2eec895b 247 PANTHER PTHR30028:SF0 2 238 4.1E-30 T 19-04-2016 IPR005226 UPF0014 family AMED_6099 ef0cd6c4200c966ef31acb2e2eec895b 247 PANTHER PTHR30028 2 238 4.1E-30 T 19-04-2016 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 SMART SM00862 153 228 1.6E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 Gene3D G3DSA:1.10.10.10 153 230 1.9E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 SMART SM00448 6 116 3.3E-50 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 Gene3D G3DSA:3.40.50.2300 7 152 8.5E-48 T 19-04-2016 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 PANTHER PTHR26402 6 231 1.1E-93 T 19-04-2016 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 SUPERFAMILY SSF52172 7 177 1.41E-46 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 Pfam PF00072 Response regulator receiver domain 8 116 1.4E-32 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 6.0E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8322 2bdd59faf50e75b53d5b39a4e5eb1608 233 PANTHER PTHR26402:SF50 6 231 1.1E-93 T 19-04-2016 AMED_4985 f20cf1b3930ca04a005f6de6ec1cd286 210 Gene3D G3DSA:1.10.357.10 16 207 1.2E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4985 f20cf1b3930ca04a005f6de6ec1cd286 210 SUPERFAMILY SSF46689 15 94 6.67E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4985 f20cf1b3930ca04a005f6de6ec1cd286 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 71 2.9E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4985 f20cf1b3930ca04a005f6de6ec1cd286 210 SUPERFAMILY SSF48498 97 206 5.19E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4985 f20cf1b3930ca04a005f6de6ec1cd286 210 PANTHER PTHR30055 8 205 2.4E-14 T 19-04-2016 AMED_3815 0ffb9a8bc928333b313039421275f105 256 Gene3D G3DSA:3.40.50.720 1 249 2.4E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3815 0ffb9a8bc928333b313039421275f105 256 PANTHER PTHR24321:SF6 2 248 4.1E-39 T 19-04-2016 AMED_3815 0ffb9a8bc928333b313039421275f105 256 PANTHER PTHR24321 2 248 4.1E-39 T 19-04-2016 AMED_3815 0ffb9a8bc928333b313039421275f105 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 7.7E-58 T 19-04-2016 AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.7E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.7E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.7E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 SUPERFAMILY SSF51735 5 249 9.3E-73 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3815 0ffb9a8bc928333b313039421275f105 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3815 0ffb9a8bc928333b313039421275f105 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.1E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 Gene3D G3DSA:3.40.50.1000 106 248 2.6E-38 T 19-04-2016 IPR023214 HAD-like domain AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 PANTHER PTHR12725 12 252 3.6E-37 T 19-04-2016 AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 136 216 4.4E-10 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 Pfam PF13419 Haloacid dehalogenase-like hydrolase 35 221 7.3E-20 T 19-04-2016 IPR023214 HAD-like domain AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 211 224 2.4E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 165 181 2.4E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 29 40 2.4E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 134 147 2.4E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_1700 8a6a58e5bebe8d1a9a79417b66381969 275 SUPERFAMILY SSF56784 30 248 7.01E-39 T 19-04-2016 IPR023214 HAD-like domain AMED_6997 c490fe7a5c5625a4c793e563870e59dd 399 Pfam PF07690 Major Facilitator Superfamily 20 297 2.3E-14 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6997 c490fe7a5c5625a4c793e563870e59dd 399 SUPERFAMILY SSF103473 17 396 1.26E-31 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6997 c490fe7a5c5625a4c793e563870e59dd 399 Gene3D G3DSA:1.20.1250.20 18 197 1.2E-11 T 19-04-2016 AMED_6997 c490fe7a5c5625a4c793e563870e59dd 399 Gene3D G3DSA:1.20.1250.20 222 395 2.3E-11 T 19-04-2016 AMED_6997 c490fe7a5c5625a4c793e563870e59dd 399 PANTHER PTHR23513 1 394 1.1E-47 T 19-04-2016 AMED_3407 3549964b915eee89aadd3ffa8545cb5c 435 Pfam PF13416 Bacterial extracellular solute-binding protein 63 372 4.8E-35 T 19-04-2016 AMED_3407 3549964b915eee89aadd3ffa8545cb5c 435 PANTHER PTHR30061 5 429 4.2E-64 T 19-04-2016 AMED_3407 3549964b915eee89aadd3ffa8545cb5c 435 SUPERFAMILY SSF53850 46 425 5.22E-68 T 19-04-2016 AMED_3407 3549964b915eee89aadd3ffa8545cb5c 435 Gene3D G3DSA:3.40.190.10 159 364 3.6E-41 T 19-04-2016 AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 PANTHER PTHR30154:SF16 1 130 2.0E-44 T 19-04-2016 AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 Gene3D G3DSA:1.10.10.10 2 46 1.7E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 Pfam PF01037 Lrp/AsnC ligand binding domain 60 130 5.7E-14 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 SMART SM00344 2 100 1.5E-23 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 SUPERFAMILY SSF46785 2 64 2.88E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 41 5.0E-9 T 19-04-2016 AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 PANTHER PTHR30154 1 130 2.0E-44 T 19-04-2016 AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 Gene3D G3DSA:3.30.70.920 47 132 3.3E-22 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7572 f031cdaf31bf5c9aecefeb7c3d973b17 138 SUPERFAMILY SSF54909 55 131 2.95E-16 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 1 411 2.7E-99 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Gene3D G3DSA:1.20.1250.20 3 172 4.2E-37 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PANTHER PTHR23501:SF48 440 517 5.9E-146 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PANTHER PTHR23501:SF48 1 414 5.9E-146 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PANTHER PTHR23501 440 517 5.9E-146 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PANTHER PTHR23501 1 414 5.9E-146 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 SUPERFAMILY SSF103473 2 174 1.44E-76 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 SUPERFAMILY SSF103473 230 402 1.44E-76 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 SUPERFAMILY SSF103473 474 506 1.44E-76 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 180 198 8.3E-6 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 85 105 8.3E-6 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 139 8.3E-6 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Pfam PF07690 Major Facilitator Superfamily 3 392 1.2E-60 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Gene3D G3DSA:1.20.1250.20 241 403 8.9E-29 T 19-04-2016 AMED_0940 ecdb3830ecabb8d5f4a5eadbb39ca8bf 517 Gene3D G3DSA:1.20.1250.20 476 498 8.9E-29 T 19-04-2016 AMED_9305 0e33ff91aaadc79c16914b9b22d9f454 150 PANTHER PTHR33164 13 141 2.5E-19 T 19-04-2016 AMED_9305 0e33ff91aaadc79c16914b9b22d9f454 150 Gene3D G3DSA:1.10.10.10 42 144 4.2E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9305 0e33ff91aaadc79c16914b9b22d9f454 150 SUPERFAMILY SSF46785 42 144 9.27E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9305 0e33ff91aaadc79c16914b9b22d9f454 150 PANTHER PTHR33164:SF11 13 141 2.5E-19 T 19-04-2016 AMED_9305 0e33ff91aaadc79c16914b9b22d9f454 150 SMART SM00347 31 132 1.1E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9305 0e33ff91aaadc79c16914b9b22d9f454 150 Pfam PF12802 MarR family 44 96 4.4E-11 T 19-04-2016 AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 SUPERFAMILY SSF52096 275 525 6.02E-84 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 Pfam PF01039 Carboxyl transferase domain 33 523 1.3E-181 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 PANTHER PTHR22855 1 525 5.4E-298 T 19-04-2016 AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 Gene3D G3DSA:3.90.226.10 276 525 4.9E-92 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 PANTHER PTHR22855:SF14 1 525 5.4E-298 T 19-04-2016 AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 Gene3D G3DSA:3.90.226.10 11 259 7.9E-78 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 100 114 1.3E-7 T 19-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 134 152 1.3E-7 T 19-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_3369 27676e4c6329dfd5c35144e5a4eee839 525 SUPERFAMILY SSF52096 10 260 7.39E-75 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5010 c9e254ee11c174da5c54609a585b1a43 246 Gene3D G3DSA:3.40.50.1820 8 242 3.5E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5010 c9e254ee11c174da5c54609a585b1a43 246 PANTHER PTHR17630:SF42 1 246 2.4E-42 T 19-04-2016 AMED_5010 c9e254ee11c174da5c54609a585b1a43 246 PANTHER PTHR17630 1 246 2.4E-42 T 19-04-2016 AMED_5010 c9e254ee11c174da5c54609a585b1a43 246 SUPERFAMILY SSF53474 8 244 6.12E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5010 c9e254ee11c174da5c54609a585b1a43 246 Pfam PF01738 Dienelactone hydrolase family 20 242 2.1E-46 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 Gene3D G3DSA:3.40.50.720 3 232 2.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 Pfam PF00106 short chain dehydrogenase 3 192 4.1E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PANTHER PTHR24322 155 186 3.7E-77 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PANTHER PTHR24322 1 136 3.7E-77 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PANTHER PTHR24322:SF554 155 186 3.7E-77 T 19-04-2016 AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PANTHER PTHR24322:SF554 1 136 3.7E-77 T 19-04-2016 AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.2E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.2E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.2E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2890 4911c48d80d8046b8fcd57ae98e62876 268 SUPERFAMILY SSF51735 3 235 3.1E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2374 e7ef141fbcd30300a483019bb9937149 583 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 39 386 1.6E-10 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_2374 e7ef141fbcd30300a483019bb9937149 583 SUPERFAMILY SSF51445 191 404 1.23E-24 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2374 e7ef141fbcd30300a483019bb9937149 583 SUPERFAMILY SSF51445 27 151 1.23E-24 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2374 e7ef141fbcd30300a483019bb9937149 583 Gene3D G3DSA:3.20.20.80 200 397 3.5E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2374 e7ef141fbcd30300a483019bb9937149 583 Gene3D G3DSA:3.20.20.80 26 149 3.5E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2374 e7ef141fbcd30300a483019bb9937149 583 PANTHER PTHR31308 38 166 4.9E-16 T 19-04-2016 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 216 367 8.1E-15 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 SUPERFAMILY SSF47203 222 371 4.99E-22 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 Gene3D G3DSA:1.20.140.10 207 371 3.7E-24 T 19-04-2016 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 PANTHER PTHR10909 8 365 1.3E-53 T 19-04-2016 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 PANTHER PTHR10909:SF10 8 365 1.3E-53 T 19-04-2016 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 Gene3D G3DSA:2.40.110.10 111 206 1.4E-14 T 19-04-2016 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 111 199 1.9E-10 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 PIRSF PIRSF016578 3 374 6.8E-18 T 19-04-2016 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 SUPERFAMILY SSF56645 9 215 7.59E-42 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 101 1.5E-14 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_5743 c38974d6088e05684b0cb2223e7d1f5d 377 Gene3D G3DSA:1.10.540.10 9 102 7.2E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 PANTHER PTHR30328:SF12 2 197 5.7E-74 T 19-04-2016 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 PANTHER PTHR30328 2 197 5.7E-74 T 19-04-2016 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 Gene3D G3DSA:1.10.357.10 2 187 3.4E-43 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 SUPERFAMILY SSF48498 83 189 1.01E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 SUPERFAMILY SSF46689 3 78 3.3E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8231 8dd02e08237193f6a3b68d1dd3593bb2 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 56 8.9E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6345 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 PANTHER PTHR21631 1 233 7.5E-52 T 19-04-2016 AMED_6345 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 SUPERFAMILY SSF51621 3 237 1.15E-41 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_6345 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 PANTHER PTHR21631:SF18 1 233 7.5E-52 T 19-04-2016 AMED_6345 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 Gene3D G3DSA:3.20.20.60 3 214 4.3E-42 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_6345 c19a28853f42b2c5d6ff1ebbd0c2c7ab 254 Pfam PF13714 Phosphoenolpyruvate phosphomutase 4 232 2.0E-56 T 19-04-2016 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:1.25.40.10 416 444 4.4E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:1.25.40.10 681 876 4.4E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:1.25.40.10 540 642 4.4E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:3.40.50.300 130 189 3.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:3.40.50.300 23 82 3.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 905 919 2.4E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 935 947 2.4E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 919 935 2.4E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 PANTHER PTHR16305 8 459 1.6E-33 T 19-04-2016 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 PANTHER PTHR16305 826 894 1.6E-33 T 19-04-2016 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Gene3D G3DSA:1.10.10.10 904 958 8.8E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF52540 126 267 2.24E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF52540 18 79 2.24E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Pfam PF00196 Bacterial regulatory proteins, luxR family 904 957 1.4E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF48452 686 885 2.78E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 SUPERFAMILY SSF46894 897 958 5.78E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 SMART SM00421 902 959 6.9E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0262 cd36b9ca77a14d270dba1782996747f2 969 Pfam PF13191 AAA ATPase domain 19 179 8.4E-21 T 19-04-2016 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PANTHER PTHR22847 611 1231 1.2E-134 T 19-04-2016 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PRINTS PR00320 G protein beta WD-40 repeat signature 1167 1181 3.4E-8 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PRINTS PR00320 G protein beta WD-40 repeat signature 904 918 3.4E-8 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PRINTS PR00320 G protein beta WD-40 repeat signature 1122 1136 3.4E-8 T 19-04-2016 IPR020472 G-protein beta WD-40 repeat AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF50978 613 742 2.11E-32 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1209 1223 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 925 1225 3.1E-86 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:2.130.10.10 617 923 8.0E-95 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF52540 112 340 2.84E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 PANTHER PTHR22847:SF50 611 1231 1.2E-134 T 19-04-2016 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 682 696 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 637 651 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 814 828 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 859 873 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 904 918 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1007 1045 5.9E-4 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1183 1222 7.3E-6 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 611 650 2.4E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 701 740 7.5E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1096 1135 7.6E-12 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 746 785 8.7E-11 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 961 1000 1.8E-4 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 656 695 2.3E-10 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 788 827 3.1E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1141 1180 2.8E-9 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 1051 1090 1.7E-11 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 919 955 1.2 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 833 872 1.2E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SMART SM00320 878 917 1.7E-9 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF50978 706 997 2.93E-77 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 618 650 1.7E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 659 695 5.3E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 751 785 1.4E-7 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 969 995 0.006 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1147 1180 9.2E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 926 955 0.065 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1017 1045 0.0019 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 881 917 1.3E-6 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 796 827 2.5E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 836 872 3.3E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 715 740 0.15 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1099 1135 1.2E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1056 1090 1.6E-8 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Pfam PF00400 WD domain, G-beta repeat 1197 1221 0.073 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 772 786 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 SUPERFAMILY SSF50978 925 1222 5.7E-73 T 19-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 Gene3D G3DSA:3.40.50.300 110 152 5.7E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1077 1091 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1122 1136 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_1786 d848abef5f9e53a39f5ceba5c0d96a9a 1259 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 1167 1181 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 SUPERFAMILY SSF53187 11 183 3.49E-56 T 19-04-2016 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 SUPERFAMILY SSF53187 283 376 3.49E-56 T 19-04-2016 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 PIRSF PIRSF037226 1 394 3.5E-129 T 19-04-2016 IPR017144 Peptidase M20A, amidohydrolase, predicted AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 Gene3D G3DSA:3.30.70.360 170 274 1.9E-24 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 Pfam PF01546 Peptidase family M20/M25/M40 91 328 2.0E-6 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 Gene3D G3DSA:3.40.630.10 280 388 3.2E-60 T 19-04-2016 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 Gene3D G3DSA:3.40.630.10 4 167 3.2E-60 T 19-04-2016 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 Pfam PF07687 Peptidase dimerisation domain 171 263 1.0E-9 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 SUPERFAMILY SSF55031 171 277 1.14E-20 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 PANTHER PTHR30575:SF0 1 395 6.8E-130 T 19-04-2016 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 PANTHER PTHR30575 1 395 6.8E-130 T 19-04-2016 AMED_4304 6ccff177aa649066ca1ddb7173535a43 395 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 24 349 1.3E-63 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_7252 d8ddfbb3fd7c469695ef8153e2a30c26 305 SUPERFAMILY SSF82171 16 296 3.49E-22 T 19-04-2016 AMED_7252 d8ddfbb3fd7c469695ef8153e2a30c26 305 Gene3D G3DSA:2.120.10.30 17 294 2.4E-36 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_0905 f0d5d0812d52b8a19cb6b23a93866b6a 152 Gene3D G3DSA:3.40.50.360 1 148 5.9E-31 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_0905 f0d5d0812d52b8a19cb6b23a93866b6a 152 SUPERFAMILY SSF52218 1 148 7.64E-28 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_0905 f0d5d0812d52b8a19cb6b23a93866b6a 152 Pfam PF03358 NADPH-dependent FMN reductase 38 124 3.5E-7 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 Gene3D G3DSA:3.40.50.300 12 228 1.6E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 PANTHER PTHR24220:SF86 15 228 4.1E-79 T 19-04-2016 AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 SUPERFAMILY SSF52540 14 227 3.13E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 Pfam PF00005 ABC transporter 30 177 3.5E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 PANTHER PTHR24220 15 228 4.1E-79 T 19-04-2016 AMED_9270 6cbda94a666f9ad95e812e3e506bf3c2 233 SMART SM00382 38 226 3.9E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 PANTHER PTHR11953 3 238 6.7E-75 T 19-04-2016 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 Pfam PF03725 3' exoribonuclease family, domain 2 161 225 2.8E-9 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 4.5E-21 T 19-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 Hamap MF_00564 Ribonuclease PH [rph]. 2 239 45.239 T 19-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 ProSitePatterns PS01277 Ribonuclease PH signature. 117 130 - T 19-04-2016 IPR018336 Ribonuclease PH, conserved site AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 PANTHER PTHR11953:SF0 3 238 6.7E-75 T 19-04-2016 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 SUPERFAMILY SSF54211 3 183 2.78E-42 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 SUPERFAMILY SSF55666 155 241 8.25E-22 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 238 1.1E-108 T 19-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 AMED_7704 55945486b4d06ecf1899b15570a2a91b 258 Gene3D G3DSA:3.30.230.70 5 238 4.6E-29 T 19-04-2016 IPR027408 PNPase/RNase PH domain AMED_8605 4a2c89b893926566d718b27f5f3eb518 379 Gene3D G3DSA:3.20.20.140 4 376 9.5E-142 T 19-04-2016 AMED_8605 4a2c89b893926566d718b27f5f3eb518 379 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 12 373 1.7E-111 T 19-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 AMED_8605 4a2c89b893926566d718b27f5f3eb518 379 SUPERFAMILY SSF51556 295 376 2.04E-103 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8605 4a2c89b893926566d718b27f5f3eb518 379 SUPERFAMILY SSF51556 6 257 2.04E-103 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8605 4a2c89b893926566d718b27f5f3eb518 379 PANTHER PTHR10443 4 257 2.8E-160 T 19-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 AMED_8605 4a2c89b893926566d718b27f5f3eb518 379 PANTHER PTHR10443 294 375 2.8E-160 T 19-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 391 54.172 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 SUPERFAMILY SSF55973 116 240 3.85E-44 T 19-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 PANTHER PTHR11964 1 386 1.5E-236 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 1 390 8.0E-165 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 1 97 6.4E-40 T 19-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 SUPERFAMILY SSF55973 1 105 8.63E-44 T 19-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 122 132 - T 19-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 SUPERFAMILY SSF55973 241 390 1.73E-65 T 19-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 PIRSF PIRSF000497 1 392 8.0E-161 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Gene3D G3DSA:3.30.300.10 142 241 1.3E-37 T 19-04-2016 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Gene3D G3DSA:3.30.300.10 252 391 4.1E-66 T 19-04-2016 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 267 275 - T 19-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Pfam PF02772 S-adenosylmethionine synthetase, central domain 121 239 2.4E-41 T 19-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Gene3D G3DSA:3.30.300.10 7 141 4.5E-46 T 19-04-2016 AMED_2758 8aacaeeb036ce93f35d177662cb4acf3 393 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 241 379 1.0E-65 T 19-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 SUPERFAMILY SSF56645 4 240 2.23E-68 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 PANTHER PTHR10909:SF311 4 380 1.7E-200 T 19-04-2016 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 4.4E-29 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 9.4E-23 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Gene3D G3DSA:2.40.110.10 120 216 8.1E-31 T 19-04-2016 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Gene3D G3DSA:1.20.140.10 217 382 2.1E-63 T 19-04-2016 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Gene3D G3DSA:1.10.540.10 4 118 2.5E-34 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 5.9E-45 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 PANTHER PTHR10909 4 380 1.7E-200 T 19-04-2016 AMED_3322 006d0f48f4dcfc8d69345b5e3a3d7bd6 384 SUPERFAMILY SSF47203 227 381 1.61E-54 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 124 3.7E-46 T 19-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 Gene3D G3DSA:2.40.50.100 6 124 1.2E-46 T 19-04-2016 AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 123 29.427 T 19-04-2016 IPR002930 Glycine cleavage system H-protein AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 Pfam PF01597 Glycine cleavage H-protein 7 124 5.4E-42 T 19-04-2016 IPR002930 Glycine cleavage system H-protein AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 SUPERFAMILY SSF51230 3 123 2.09E-39 T 19-04-2016 IPR011053 Single hybrid motif AMED_1815 e7825bcc4d149ff51bca0bac3f90f59a 125 PANTHER PTHR11715 2 124 8.0E-55 T 19-04-2016 IPR002930 Glycine cleavage system H-protein AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 PANTHER PTHR23420 11 160 0.0 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 PANTHER PTHR23420 198 490 0.0 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 89 103 - T 19-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SUPERFAMILY SSF51735 248 410 2.19E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SUPERFAMILY SSF52283 200 247 6.23E-113 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SUPERFAMILY SSF52283 16 162 6.23E-113 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SUPERFAMILY SSF52283 411 490 6.23E-113 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 18 482 4.2E-191 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 17 489 1.7E-145 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 PIRSF PIRSF001109 4 490 3.1E-191 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SMART SM00997 248 410 1.5E-107 T 19-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Gene3D G3DSA:3.40.50.720 250 409 6.9E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 248 410 4.1E-80 T 19-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 PANTHER PTHR23420:SF6 11 160 0.0 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 PANTHER PTHR23420:SF6 198 490 0.0 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 13 482 48.289 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Gene3D G3DSA:3.40.50.1480 411 490 2.7E-143 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 Gene3D G3DSA:3.40.50.1480 17 249 2.7E-143 T 19-04-2016 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 SMART SM00996 17 489 0.0 T 19-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8006 5e1efe0af2aaa1bb68e3233f5e9a4613 490 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 270 286 - T 19-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 PANTHER PTHR11070:SF25 77 339 7.2E-120 T 19-04-2016 AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 Pfam PF13245 Part of AAA domain 185 243 5.4E-14 T 19-04-2016 AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 PANTHER PTHR11070:SF25 442 711 7.2E-120 T 19-04-2016 AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 Gene3D G3DSA:3.40.50.300 480 594 3.6E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 Gene3D G3DSA:3.40.50.300 169 277 3.6E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 Gene3D G3DSA:3.40.50.300 664 719 2.1E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 SUPERFAMILY SSF52540 360 390 7.57E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 SUPERFAMILY SSF52540 169 247 7.57E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 SUPERFAMILY SSF52540 476 709 7.57E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 PANTHER PTHR11070 77 339 7.2E-120 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_8980 5d83cf7a67f47e60e8cbffb48fa09c71 734 PANTHER PTHR11070 442 711 7.2E-120 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_6083 739a9cb2fd8f183684e764c01992d1be 401 Pfam PF01757 Acyltransferase family 11 366 2.4E-19 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_1059 348a503cee9e35681affb4e62735e6e3 187 Gene3D G3DSA:1.10.340.30 11 185 9.0E-75 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_1059 348a503cee9e35681affb4e62735e6e3 187 PANTHER PTHR30037:SF4 1 185 7.5E-100 T 19-04-2016 AMED_1059 348a503cee9e35681affb4e62735e6e3 187 PANTHER PTHR30037 1 185 7.5E-100 T 19-04-2016 AMED_1059 348a503cee9e35681affb4e62735e6e3 187 SUPERFAMILY SSF48150 11 186 9.2E-70 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_1059 348a503cee9e35681affb4e62735e6e3 187 Pfam PF03352 Methyladenine glycosylase 15 185 4.1E-70 T 19-04-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AMED_1059 348a503cee9e35681affb4e62735e6e3 187 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 12 185 8.8E-77 T 19-04-2016 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 SUPERFAMILY SSF51905 3 194 2.74E-42 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 2.1E-10 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 2.1E-10 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 2.1E-10 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.1E-10 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 SUPERFAMILY SSF51905 149 305 3.11E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.2E-17 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 5.2E-17 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 5.2E-17 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 5.2E-17 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 5.2E-17 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 Gene3D G3DSA:3.50.50.60 2 111 2.3E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PANTHER PTHR22912:SF1 1 416 3.3E-103 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 PANTHER PTHR22912 1 416 3.3E-103 T 19-04-2016 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 295 4.5E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 Pfam PF04324 BFD-like [2Fe-2S] binding domain 422 466 3.4E-11 T 19-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain AMED_1122 f7a713a24f0960a623ee0700f08e8637 475 Gene3D G3DSA:3.50.50.60 112 305 9.8E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3080 1f5f2a469b0bff08627034cbe47b2f3f 154 SUPERFAMILY SSF54593 4 146 7.74E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3080 1f5f2a469b0bff08627034cbe47b2f3f 154 Gene3D G3DSA:3.10.180.10 9 150 5.4E-42 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3080 1f5f2a469b0bff08627034cbe47b2f3f 154 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 6 146 1.3E-5 T 19-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase AMED_3080 1f5f2a469b0bff08627034cbe47b2f3f 154 PANTHER PTHR33990 2 153 1.7E-27 T 19-04-2016 AMED_3080 1f5f2a469b0bff08627034cbe47b2f3f 154 PANTHER PTHR33990:SF1 2 153 1.7E-27 T 19-04-2016 AMED_6423 a83b37d3586d9218e3a20b32dcb2f64b 395 SUPERFAMILY SSF50494 153 375 7.45E-18 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_6423 a83b37d3586d9218e3a20b32dcb2f64b 395 Pfam PF13365 Trypsin-like peptidase domain 185 340 2.1E-14 T 19-04-2016 AMED_6423 a83b37d3586d9218e3a20b32dcb2f64b 395 Gene3D G3DSA:2.40.10.10 257 344 2.5E-9 T 19-04-2016 AMED_6423 a83b37d3586d9218e3a20b32dcb2f64b 395 Gene3D G3DSA:2.40.10.10 182 256 8.5E-5 T 19-04-2016 AMED_6423 a83b37d3586d9218e3a20b32dcb2f64b 395 PRINTS PR00839 V8 serine protease family signature 185 202 4.1E-7 T 19-04-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMED_6423 a83b37d3586d9218e3a20b32dcb2f64b 395 PRINTS PR00839 V8 serine protease family signature 316 332 4.1E-7 T 19-04-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 PANTHER PTHR11712:SF285 9 1766 0.0 T 19-04-2016 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 PANTHER PTHR11712 9 1766 0.0 T 19-04-2016 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 86 329 8.2E-87 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00825 Beta-ketoacyl synthase 88 506 6.9E-212 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.366.10 621 741 2.4E-56 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.366.10 806 920 2.4E-56 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.47.10 88 342 2.3E-96 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.47.10 343 506 2.1E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1438 1610 4.1E-35 T 19-04-2016 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.30.70.250 758 805 3.9E-4 T 19-04-2016 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1722 1737 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF47336 1691 1772 7.98E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF47336 1860 1927 9.71E-6 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF14765 Polyketide synthase dehydratase 982 1231 3.1E-47 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00823 Phosphopantetheine attachment site 6 73 7.5E-5 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00823 Phosphopantetheine attachment site 1698 1767 7.0E-11 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00698 Acyl transferase domain 624 894 1.0E-68 T 19-04-2016 IPR014043 Acyl transferase AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 458 570 5.1E-20 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 243 259 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF52151 807 893 1.28E-52 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF52151 623 746 1.28E-52 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF53901 84 448 4.44E-100 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF53901 481 502 4.44E-100 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF51735 1232 1426 2.4E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF53474 1936 2193 7.1E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:1.10.1200.10 17 70 2.0E-6 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.50.1820 2122 2195 1.6E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.50.1820 1945 2043 1.6E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:1.10.1200.10 1859 1932 2.7E-7 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:1.10.1200.10 1688 1766 9.8E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00550 Phosphopantetheine attachment site 17 69 5.9E-5 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00550 Phosphopantetheine attachment site 1701 1763 1.6E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00826 982 1121 2.5E-36 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF51735 1436 1667 2.4E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 338 455 2.0E-44 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF47336 17 101 1.83E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 626 906 7.5E-76 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Gene3D G3DSA:3.40.50.720 1435 1640 3.6E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF00975 Thioesterase domain 1950 2181 2.0E-24 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 SUPERFAMILY SSF55048 746 805 4.32E-9 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_3368 df6d7a8b5233578994410a620095ff1b 2197 Pfam PF08659 KR domain 1438 1608 1.7E-50 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_7057 3a65306d06193161565118d23917bdcd 338 Gene3D G3DSA:3.30.360.10 142 257 1.5E-36 T 19-04-2016 AMED_7057 3a65306d06193161565118d23917bdcd 338 Gene3D G3DSA:3.30.360.10 292 336 1.5E-36 T 19-04-2016 AMED_7057 3a65306d06193161565118d23917bdcd 338 PANTHER PTHR22604 4 336 7.0E-97 T 19-04-2016 AMED_7057 3a65306d06193161565118d23917bdcd 338 SUPERFAMILY SSF51735 4 155 1.09E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7057 3a65306d06193161565118d23917bdcd 338 PANTHER PTHR22604:SF105 4 336 7.0E-97 T 19-04-2016 AMED_7057 3a65306d06193161565118d23917bdcd 338 Gene3D G3DSA:3.40.50.720 3 141 1.1E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7057 3a65306d06193161565118d23917bdcd 338 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 1.4E-24 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_7057 3a65306d06193161565118d23917bdcd 338 SUPERFAMILY SSF55347 128 306 2.78E-34 T 19-04-2016 AMED_1205 f499363b5c3003161b6d651b39e9f86a 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 244 1.3E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1205 f499363b5c3003161b6d651b39e9f86a 260 PANTHER PTHR30193:SF20 1 253 5.2E-61 T 19-04-2016 AMED_1205 f499363b5c3003161b6d651b39e9f86a 260 SUPERFAMILY SSF161098 2 250 6.26E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1205 f499363b5c3003161b6d651b39e9f86a 260 Gene3D G3DSA:1.10.3720.10 2 252 1.4E-51 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1205 f499363b5c3003161b6d651b39e9f86a 260 PANTHER PTHR30193 1 253 5.2E-61 T 19-04-2016 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 SUPERFAMILY SSF46946 133 216 3.39E-20 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 SUPERFAMILY SSF81624 4 137 1.7E-16 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 SMART SM00898 1 125 9.8E-13 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 Gene3D G3DSA:3.20.190.10 3 132 2.9E-17 T 19-04-2016 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 PANTHER PTHR22993:SF15 1 254 4.8E-42 T 19-04-2016 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 124 8.7E-18 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 SMART SM01232 133 221 1.9E-21 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 PANTHER PTHR22993 1 254 4.8E-42 T 19-04-2016 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 139 216 3.2E-18 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 SUPERFAMILY SSF57716 213 256 1.74E-8 T 19-04-2016 AMED_7013 afc9270b8515e37f23896198cc8151d5 257 Gene3D G3DSA:1.10.8.50 134 256 7.5E-30 T 19-04-2016 AMED_6249 3c950b9da78ff62c2d7489f172c0f09a 279 Pfam PF03799 Cell division protein FtsQ 166 263 6.2E-9 T 19-04-2016 IPR005548 Cell division protein FtsQ/DivIB AMED_6249 3c950b9da78ff62c2d7489f172c0f09a 279 PANTHER PTHR37820 6 269 1.2E-31 T 19-04-2016 AMED_6249 3c950b9da78ff62c2d7489f172c0f09a 279 Pfam PF08478 POTRA domain, FtsQ-type 86 152 1.8E-18 T 19-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 324 7.6E-20 T 19-04-2016 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 7.6E-20 T 19-04-2016 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 7.6E-20 T 19-04-2016 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 7.6E-20 T 19-04-2016 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 PANTHER PTHR13789:SF174 2 371 1.5E-104 T 19-04-2016 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 Gene3D G3DSA:3.50.50.60 286 357 7.4E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 Gene3D G3DSA:3.50.50.60 6 176 7.4E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 SUPERFAMILY SSF51905 288 367 8.65E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 SUPERFAMILY SSF51905 1 174 8.65E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 Pfam PF01494 FAD binding domain 7 330 1.5E-15 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_3593 5df93aa0d1927588dcd5d859a70587ff 401 PANTHER PTHR13789 2 371 1.5E-104 T 19-04-2016 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 180 8.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 208 8.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 196 8.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 PANTHER PTHR26402:SF151 13 220 4.1E-59 T 19-04-2016 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 165 220 5.7E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 Gene3D G3DSA:3.40.50.2300 12 132 5.1E-29 T 19-04-2016 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 180 207 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 PANTHER PTHR26402 13 220 4.1E-59 T 19-04-2016 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 Pfam PF00072 Response regulator receiver domain 15 127 7.1E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 SMART SM00448 13 127 3.1E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 Gene3D G3DSA:1.10.10.10 133 226 2.0E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 SUPERFAMILY SSF46894 149 225 7.48E-23 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 SUPERFAMILY SSF52172 12 145 3.98E-28 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0788 37ec1f2e3b09bf3248de0d9e56b73a55 226 SMART SM00421 163 220 1.6E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2524 2454701e89f30630b64006f1f6b9f5fe 303 Gene3D G3DSA:3.10.180.10 1 131 2.5E-32 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2524 2454701e89f30630b64006f1f6b9f5fe 303 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 142 267 2.4E-22 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_2524 2454701e89f30630b64006f1f6b9f5fe 303 SUPERFAMILY SSF54593 1 123 1.59E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2524 2454701e89f30630b64006f1f6b9f5fe 303 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 245 266 - T 19-04-2016 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 AMED_2524 2454701e89f30630b64006f1f6b9f5fe 303 SUPERFAMILY SSF54593 135 292 2.15E-35 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2524 2454701e89f30630b64006f1f6b9f5fe 303 Gene3D G3DSA:3.10.180.10 134 295 3.3E-57 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0495 f39051bce9918f5da986e2053b7486cb 208 Gene3D G3DSA:3.40.50.1240 5 190 2.9E-32 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_0495 f39051bce9918f5da986e2053b7486cb 208 SMART SM00855 4 156 1.1E-15 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0495 f39051bce9918f5da986e2053b7486cb 208 PANTHER PTHR23029:SF35 3 204 2.6E-74 T 19-04-2016 AMED_0495 f39051bce9918f5da986e2053b7486cb 208 SUPERFAMILY SSF53254 3 194 4.44E-37 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_0495 f39051bce9918f5da986e2053b7486cb 208 PANTHER PTHR23029 3 204 2.6E-74 T 19-04-2016 AMED_0495 f39051bce9918f5da986e2053b7486cb 208 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 190 7.9E-36 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 19-04-2016 IPR030659 SecY conserved site AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 Pfam PF00344 SecY translocase 72 418 2.8E-112 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 SUPERFAMILY SSF103491 2 425 1.05E-118 T 19-04-2016 IPR023201 SecY subunit domain AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PIRSF PIRSF004557 1 435 5.4E-117 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PANTHER PTHR10906:SF2 1 435 1.1E-186 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 430 3.6E-129 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 434 28.803 T 19-04-2016 IPR026593 Protein translocase subunit SecY AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PANTHER PTHR10906 1 435 1.1E-186 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 Gene3D G3DSA:1.10.3370.10 2 435 1.6E-149 T 19-04-2016 IPR023201 SecY subunit domain AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 71 91 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 403 421 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 112 135 4.9E-100 T 19-04-2016 AMED_0699 d79dc3b73f032f839b3a89c2225f2316 435 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 4.9E-100 T 19-04-2016 AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 Gene3D G3DSA:3.40.50.970 345 525 4.3E-56 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 Gene3D G3DSA:3.40.50.970 1 168 1.2E-39 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 SUPERFAMILY SSF52518 349 525 3.16E-53 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 184 288 2.0E-21 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 371 516 1.9E-34 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 SUPERFAMILY SSF52518 1 172 5.89E-37 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 4.9E-36 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 SUPERFAMILY SSF52467 148 328 1.96E-28 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 PANTHER PTHR18968 1 521 6.2E-101 T 19-04-2016 AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 Gene3D G3DSA:3.40.50.1220 182 326 4.1E-25 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_0339 a9e9f6763dafbf3c6735a9c4903b7df2 543 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 407 426 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.90.470.20 1326 1403 6.8E-12 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF52151 704 806 6.54E-28 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF52151 537 634 6.54E-28 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SMART SM00826 922 1084 0.0074 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF14765 Polyketide synthase dehydratase 932 1191 2.4E-20 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.40.47.10 292 451 9.7E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF55048 643 699 1.7E-5 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 541 813 2.8E-13 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 PANTHER PTHR11712:SF285 1 125 2.8E-164 T 19-04-2016 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 PANTHER PTHR11712:SF285 169 1269 2.8E-164 T 19-04-2016 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.40.366.10 586 638 6.7E-27 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.40.366.10 702 812 6.7E-27 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF56214 1326 1406 3.49E-15 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF53901 426 447 3.43E-69 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF53901 173 398 3.43E-69 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF53901 1 114 3.43E-69 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 286 402 6.2E-33 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.40.47.10 1 291 8.1E-65 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Gene3D G3DSA:3.90.470.20 1229 1321 6.2E-7 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF56214 1226 1323 1.44E-8 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SMART SM00825 Beta-ketoacyl synthase 1 451 5.7E-90 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 191 207 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1326 1411 6.3E-12 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 278 7.0E-59 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 SUPERFAMILY SSF54637 1075 1182 6.94E-5 T 19-04-2016 IPR029069 HotDog domain AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 PANTHER PTHR11712 1 125 2.8E-164 T 19-04-2016 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 PANTHER PTHR11712 169 1269 2.8E-164 T 19-04-2016 AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF00698 Acyl transferase domain 591 783 8.5E-17 T 19-04-2016 IPR014043 Acyl transferase AMED_4605 a3e076f8d52bf21eac779b48c02ad6d9 1439 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 407 480 7.7E-10 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 Hamap MF_01974 Methionine aminopeptidase [map]. 2 255 39.199 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PANTHER PTHR10804 1 257 5.6E-115 T 19-04-2016 AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 Gene3D G3DSA:3.90.230.10 1 255 2.7E-86 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 166 178 4.1E-22 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 4.1E-22 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 197 209 4.1E-22 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 4.1E-22 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 PANTHER PTHR10804:SF41 1 257 5.6E-115 T 19-04-2016 AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 Pfam PF00557 Metallopeptidase family M24 12 246 8.2E-46 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 172 190 - T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 254 1.7E-84 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_0701 1f934cbb2d52fa39ee5a5eaee37e1f12 258 SUPERFAMILY SSF55920 1 253 1.01E-80 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624 96 319 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624 824 907 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 160 327 2.2E-8 T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624:SF67 824 907 0.0 T 19-04-2016 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 SUPERFAMILY SSF52518 504 736 2.59E-86 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PIRSF PIRSF000156 19 925 0.0 T 19-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Gene3D G3DSA:3.40.50.970 79 498 5.9E-151 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624:SF67 583 805 0.0 T 19-04-2016 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624:SF67 388 498 0.0 T 19-04-2016 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624:SF67 516 562 0.0 T 19-04-2016 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 SUPERFAMILY SSF52922 739 917 2.62E-50 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 29 921 0.0 T 19-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624 583 805 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Gene3D G3DSA:3.40.50.920 744 918 5.9E-65 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624 388 498 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624 516 562 0.0 T 19-04-2016 IPR033247 Transketolase family AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 PANTHER PTHR11624:SF67 96 319 0.0 T 19-04-2016 AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 SUPERFAMILY SSF52518 79 498 2.75E-128 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2113 cabfa3e7f5a32f0fb56e22b8cf253d7e 931 Gene3D G3DSA:3.40.50.970 503 740 6.7E-110 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4180 4878d06fa3345717802eb66addbb6323 91 Gene3D G3DSA:1.10.1200.10 7 80 1.5E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4180 4878d06fa3345717802eb66addbb6323 91 Pfam PF00550 Phosphopantetheine attachment site 11 74 4.0E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4180 4878d06fa3345717802eb66addbb6323 91 SUPERFAMILY SSF47336 3 83 1.09E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5325 3c419178339e57cc31f5ad3417852d31 173 Gene3D G3DSA:1.10.10.10 4 150 1.3E-36 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5325 3c419178339e57cc31f5ad3417852d31 173 SUPERFAMILY SSF46785 5 149 2.84E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5325 3c419178339e57cc31f5ad3417852d31 173 PANTHER PTHR33164 5 159 2.3E-39 T 19-04-2016 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 PANTHER PTHR33164:SF1 5 159 2.3E-39 T 19-04-2016 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 Pfam PF12802 MarR family 37 98 7.5E-16 T 19-04-2016 AMED_5325 3c419178339e57cc31f5ad3417852d31 173 SMART SM00347 32 135 1.8E-17 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8606 daa0658ad3d0c588b7472bb3a4542cf6 148 Pfam PF12802 MarR family 35 94 3.5E-9 T 19-04-2016 AMED_8606 daa0658ad3d0c588b7472bb3a4542cf6 148 PANTHER PTHR33164 4 147 2.2E-15 T 19-04-2016 AMED_8606 daa0658ad3d0c588b7472bb3a4542cf6 148 SUPERFAMILY SSF46785 24 142 7.44E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8606 daa0658ad3d0c588b7472bb3a4542cf6 148 Gene3D G3DSA:1.10.10.10 25 142 7.5E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8606 daa0658ad3d0c588b7472bb3a4542cf6 148 SMART SM00347 29 132 3.8E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 Pfam PF03462 PCRF domain 11 202 1.1E-64 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 SMART SM00937 64 177 4.5E-51 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 PANTHER PTHR11075 11 354 1.5E-152 T 19-04-2016 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 Gene3D G3DSA:1.20.58.410 5 85 1.3E-17 T 19-04-2016 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 5 353 1.7E-147 T 19-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 Pfam PF00472 RF-1 domain 210 319 6.0E-41 T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 Gene3D G3DSA:3.30.160.20 209 286 2.7E-35 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 PANTHER PTHR11075:SF9 11 354 1.5E-152 T 19-04-2016 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 2 355 36.952 T 19-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 SUPERFAMILY SSF75620 9 351 1.83E-126 T 19-04-2016 AMED_7790 b00adf6a35654b7c592de970b24b68bf 356 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 Gene3D G3DSA:3.30.390.50 224 326 2.8E-33 T 19-04-2016 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 SMART SM01092 226 324 8.8E-27 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3642 f8f11e513a1e83737f8cae186103e014 331 Gene3D G3DSA:3.30.43.10 1 51 4.9E-17 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 Gene3D G3DSA:3.30.465.10 157 218 6.0E-37 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 Gene3D G3DSA:3.30.465.10 58 113 6.0E-37 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 SUPERFAMILY SSF56176 1 219 1.74E-60 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 PANTHER PTHR11908:SF97 1 119 1.8E-134 T 19-04-2016 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 PANTHER PTHR11908:SF97 162 327 1.8E-134 T 19-04-2016 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 227 318 6.2E-15 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3642 f8f11e513a1e83737f8cae186103e014 331 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 219 4.5E-53 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 PANTHER PTHR11908 1 119 1.8E-134 T 19-04-2016 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 PANTHER PTHR11908 162 327 1.8E-134 T 19-04-2016 AMED_3642 f8f11e513a1e83737f8cae186103e014 331 SUPERFAMILY SSF55447 225 324 2.88E-25 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 PANTHER PTHR24423 189 521 4.7E-76 T 19-04-2016 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 SMART SM00091 211 277 0.0017 T 19-04-2016 IPR000014 PAS domain AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF55890 325 387 8.37E-5 T 19-04-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:1.10.287.130 308 359 8.9E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 PANTHER PTHR24423:SF375 27 156 4.7E-76 T 19-04-2016 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 PANTHER PTHR24423:SF375 189 521 4.7E-76 T 19-04-2016 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 PANTHER PTHR24423 27 156 4.7E-76 T 19-04-2016 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF55785 204 308 2.28E-7 T 19-04-2016 IPR000014 PAS domain AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Pfam PF17203 Single cache domain 3 35 168 2.9E-28 T 19-04-2016 IPR033463 Single cache domain 3 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Pfam PF13188 PAS domain 211 257 1.8E-5 T 19-04-2016 IPR000014 PAS domain AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 1.4E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 469 1.4E-7 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:3.30.450.20 31 169 8.8E-43 T 19-04-2016 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 519 1.2E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF55874 388 519 1.15E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 SUPERFAMILY SSF103190 38 167 3.14E-31 T 19-04-2016 IPR029151 Periplasmic sensor domain-like AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:3.30.450.20 212 307 1.1E-8 T 19-04-2016 AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 Gene3D G3DSA:3.30.565.10 381 521 2.8E-24 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6073 dfd29034bcc4ffdbd13caaff2a9bd209 524 SMART SM00387 415 521 7.0E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2247 c8e37150c2947e3e79d0ec506e31c5d2 473 Pfam PF05108 Type VII secretion system ESX-1, transport TM domain B 3 463 5.6E-86 T 19-04-2016 IPR007795 Type VII secretion system EccB AMED_2247 c8e37150c2947e3e79d0ec506e31c5d2 473 PANTHER PTHR40765:SF1 2 463 4.7E-38 T 19-04-2016 AMED_2247 c8e37150c2947e3e79d0ec506e31c5d2 473 TIGRFAM TIGR03919 T7SS_EccB: type VII secretion protein EccB 3 458 2.2E-84 T 19-04-2016 IPR007795 Type VII secretion system EccB AMED_2247 c8e37150c2947e3e79d0ec506e31c5d2 473 PANTHER PTHR40765 2 463 4.7E-38 T 19-04-2016 AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PANTHER PTHR11732 13 325 1.4E-179 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 SUPERFAMILY SSF51430 14 328 2.23E-89 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PANTHER PTHR11732:SF191 13 325 1.4E-179 T 19-04-2016 AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 126 136 6.8E-5 T 19-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 270 282 6.8E-5 T 19-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 283 296 6.8E-5 T 19-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 Pfam PF00248 Aldo/keto reductase family 28 327 1.0E-68 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2999 3b99fe34263a3e2ab5e4cce8be3a4af8 342 Gene3D G3DSA:3.20.20.100 13 328 5.2E-85 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2037 d25969d0950a41803079cb3d2b9a4613 273 PANTHER PTHR22939 31 270 2.7E-29 T 19-04-2016 AMED_2037 d25969d0950a41803079cb3d2b9a4613 273 PANTHER PTHR22939:SF78 31 270 2.7E-29 T 19-04-2016 AMED_2037 d25969d0950a41803079cb3d2b9a4613 273 Pfam PF02163 Peptidase family M50 95 223 4.2E-15 T 19-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 AMED_2037 d25969d0950a41803079cb3d2b9a4613 273 Gene3D G3DSA:2.30.42.10 31 85 1.9E-12 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_2037 d25969d0950a41803079cb3d2b9a4613 273 SUPERFAMILY SSF50156 31 87 1.58E-11 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 SUPERFAMILY SSF52096 3 220 3.27E-43 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 PANTHER PTHR22855 3 409 9.3E-142 T 19-04-2016 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 Gene3D G3DSA:3.90.226.10 239 441 7.0E-33 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 240 298 2.5E-7 T 19-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 145 162 2.6E-13 T 19-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 108 126 2.6E-13 T 19-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 74 88 2.6E-13 T 19-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 Gene3D G3DSA:3.90.226.10 37 222 7.8E-32 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 PANTHER PTHR22855:SF42 3 409 9.3E-142 T 19-04-2016 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 SUPERFAMILY SSF52096 232 440 1.01E-44 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 Pfam PF01039 Carboxyl transferase domain 306 410 7.6E-10 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_0745 a5a2e7fc75185ce5d1abf216167886c5 442 Pfam PF01039 Carboxyl transferase domain 47 196 2.0E-11 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_7589 48a256c564ee021a0015defb1be33fa3 414 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 64 401 5.6E-88 T 19-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- AMED_7589 48a256c564ee021a0015defb1be33fa3 414 PANTHER PTHR30521 47 414 4.3E-117 T 19-04-2016 AMED_7589 48a256c564ee021a0015defb1be33fa3 414 SUPERFAMILY SSF54909 57 406 2.68E-89 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7589 48a256c564ee021a0015defb1be33fa3 414 PANTHER PTHR30521:SF4 47 414 4.3E-117 T 19-04-2016 AMED_7589 48a256c564ee021a0015defb1be33fa3 414 Pfam PF04261 Dyp-type peroxidase family 64 401 2.7E-96 T 19-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- AMED_2574 3dbb419d379b82a0edb678bb29fa22b4 301 PANTHER PTHR10584:SF1 3 224 6.2E-58 T 19-04-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMED_2574 3dbb419d379b82a0edb678bb29fa22b4 301 PANTHER PTHR10584 3 224 6.2E-58 T 19-04-2016 AMED_2574 3dbb419d379b82a0edb678bb29fa22b4 301 SUPERFAMILY SSF110581 4 300 8.37E-94 T 19-04-2016 AMED_2574 3dbb419d379b82a0edb678bb29fa22b4 301 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 9 301 37.416 T 19-04-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMED_2574 3dbb419d379b82a0edb678bb29fa22b4 301 Pfam PF04227 Indigoidine synthase A like protein 10 299 5.9E-112 T 19-04-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMED_6060 b76cbd9e411b0ac5750dec7d9fd75888 127 Gene3D G3DSA:3.30.1330.40 2 126 2.8E-41 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_6060 b76cbd9e411b0ac5750dec7d9fd75888 127 SUPERFAMILY SSF55298 1 126 8.01E-40 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_6060 b76cbd9e411b0ac5750dec7d9fd75888 127 PANTHER PTHR11803 6 122 8.2E-43 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_6060 b76cbd9e411b0ac5750dec7d9fd75888 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 125 3.3E-33 T 19-04-2016 IPR006056 RidA family AMED_6060 b76cbd9e411b0ac5750dec7d9fd75888 127 Pfam PF01042 Endoribonuclease L-PSP 8 124 2.5E-33 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_2459 2c49c3373e120f746d2b934ee5894b59 360 SUPERFAMILY SSF51569 17 360 2.34E-127 T 19-04-2016 AMED_2459 2c49c3373e120f746d2b934ee5894b59 360 Pfam PF00793 DAHP synthetase I family 50 346 1.7E-91 T 19-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 AMED_2459 2c49c3373e120f746d2b934ee5894b59 360 PIRSF PIRSF001361 3 360 1.6E-153 T 19-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2459 2c49c3373e120f746d2b934ee5894b59 360 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 14 360 1.3E-145 T 19-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2459 2c49c3373e120f746d2b934ee5894b59 360 PANTHER PTHR21225 1 360 8.1E-200 T 19-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2459 2c49c3373e120f746d2b934ee5894b59 360 Gene3D G3DSA:3.20.20.70 17 360 2.1E-144 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 202 7.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 Gene3D G3DSA:3.40.50.2300 6 116 2.5E-12 T 19-04-2016 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 PANTHER PTHR26402:SF151 7 209 7.7E-35 T 19-04-2016 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 SMART SM00448 7 111 0.0033 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 SUPERFAMILY SSF52172 6 126 1.85E-15 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 Pfam PF00072 Response regulator receiver domain 9 111 2.3E-6 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 Gene3D G3DSA:1.10.10.10 117 211 1.2E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 2.2E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 2.2E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 2.2E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 SUPERFAMILY SSF46894 139 210 3.74E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 PANTHER PTHR26402 7 209 7.7E-35 T 19-04-2016 AMED_4240 375b32bdc2b01961204db38cfbf173ad 217 SMART SM00421 147 204 2.9E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM01043 112 257 1.1E-36 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1527 31629db66c485e847d5cd961fc614161 978 SUPERFAMILY SSF48452 760 959 2.84E-24 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 PANTHER PTHR22845:SF4 158 623 2.1E-78 T 19-04-2016 AMED_1527 31629db66c485e847d5cd961fc614161 978 Gene3D G3DSA:3.40.50.300 303 399 2.1E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 845 878 0.14 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 725 758 5.5 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 207 240 36.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 925 958 40.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 885 918 260.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 765 798 18.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00028 805 838 110.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 PRINTS PR00364 Disease resistance protein signature 385 399 9.4E-9 T 19-04-2016 AMED_1527 31629db66c485e847d5cd961fc614161 978 PRINTS PR00364 Disease resistance protein signature 308 323 9.4E-9 T 19-04-2016 AMED_1527 31629db66c485e847d5cd961fc614161 978 PRINTS PR00364 Disease resistance protein signature 470 484 9.4E-9 T 19-04-2016 AMED_1527 31629db66c485e847d5cd961fc614161 978 Gene3D G3DSA:1.25.40.10 711 824 6.3E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 Gene3D G3DSA:1.25.40.10 825 958 6.3E-19 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 Gene3D G3DSA:1.10.10.10 22 107 1.7E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1527 31629db66c485e847d5cd961fc614161 978 Pfam PF03704 Bacterial transcriptional activator domain 112 255 4.8E-36 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1527 31629db66c485e847d5cd961fc614161 978 Pfam PF00486 Transcriptional regulatory protein, C terminal 35 103 1.0E-6 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1527 31629db66c485e847d5cd961fc614161 978 PANTHER PTHR22845 158 623 2.1E-78 T 19-04-2016 AMED_1527 31629db66c485e847d5cd961fc614161 978 SUPERFAMILY SSF46894 14 105 5.39E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1527 31629db66c485e847d5cd961fc614161 978 Gene3D G3DSA:1.25.40.10 119 237 6.3E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 Gene3D G3DSA:1.25.40.10 547 548 6.3E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 Pfam PF13424 Tetratricopeptide repeat 890 956 7.3E-8 T 19-04-2016 AMED_1527 31629db66c485e847d5cd961fc614161 978 Pfam PF00931 NB-ARC domain 304 540 2.9E-13 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_1527 31629db66c485e847d5cd961fc614161 978 SUPERFAMILY SSF48452 109 268 2.96E-28 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1527 31629db66c485e847d5cd961fc614161 978 SUPERFAMILY SSF52540 273 532 1.04E-25 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1527 31629db66c485e847d5cd961fc614161 978 SMART SM00862 27 105 2.9E-12 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 SUPERFAMILY SSF51735 8 242 3.01E-73 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PANTHER PTHR24321 4 246 3.9E-61 T 19-04-2016 AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PANTHER PTHR24321:SF6 4 246 3.9E-61 T 19-04-2016 AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 242 2.3E-58 T 19-04-2016 AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 6.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 6.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 6.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7857 e9c93e416f33f1c57bf4647e0c194464 263 Gene3D G3DSA:3.40.50.720 2 243 2.7E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 Pfam PF03061 Thioesterase superfamily 46 115 1.6E-9 T 19-04-2016 IPR006683 Thioesterase domain AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 16 130 1.8E-41 T 19-04-2016 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 113 4.5E-17 T 19-04-2016 IPR003736 Phenylacetic acid degradation-related domain AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 Gene3D G3DSA:3.10.129.10 4 134 2.5E-41 T 19-04-2016 IPR029069 HotDog domain AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 SUPERFAMILY SSF54637 6 126 1.41E-26 T 19-04-2016 IPR029069 HotDog domain AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 PANTHER PTHR12418:SF24 8 126 1.4E-38 T 19-04-2016 AMED_1562 00da4d385cea0a263f427ba4591abc0b 136 PANTHER PTHR12418 8 126 1.4E-38 T 19-04-2016 AMED_8218 67b640c8073052096ea5b92343cbb671 259 PANTHER PTHR10245 9 259 4.2E-31 T 19-04-2016 AMED_8218 67b640c8073052096ea5b92343cbb671 259 PANTHER PTHR10245:SF7 9 259 4.2E-31 T 19-04-2016 AMED_5537 78a7a3a22b5871fa2b54e8f661e2a090 160 Gene3D G3DSA:3.10.450.50 30 159 3.7E-29 T 19-04-2016 IPR032710 NTF2-like domain AMED_5537 78a7a3a22b5871fa2b54e8f661e2a090 160 SUPERFAMILY SSF54427 33 158 1.0E-21 T 19-04-2016 IPR032710 NTF2-like domain AMED_5537 78a7a3a22b5871fa2b54e8f661e2a090 160 Pfam PF13474 SnoaL-like domain 45 157 3.7E-8 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_5537 78a7a3a22b5871fa2b54e8f661e2a090 160 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 33 140 1.3E-18 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 Gene3D G3DSA:1.10.10.60 263 310 6.6E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 Gene3D G3DSA:1.10.10.60 214 262 4.2E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 Pfam PF01965 DJ-1/PfpI family 3 169 3.8E-23 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_3078 139f3753b628a1c722c525cf91c0c629 313 SUPERFAMILY SSF46689 209 257 8.98E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 PANTHER PTHR11019 4 313 2.8E-95 T 19-04-2016 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 Pfam PF12833 Helix-turn-helix domain 230 308 1.9E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 SMART SM00342 224 307 1.8E-29 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 PANTHER PTHR11019:SF68 4 313 2.8E-95 T 19-04-2016 AMED_3078 139f3753b628a1c722c525cf91c0c629 313 SUPERFAMILY SSF52317 1 189 2.9E-47 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_3078 139f3753b628a1c722c525cf91c0c629 313 Gene3D G3DSA:3.40.50.880 3 213 1.1E-52 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_3078 139f3753b628a1c722c525cf91c0c629 313 SUPERFAMILY SSF46689 260 311 4.18E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 Pfam PF00107 Zinc-binding dehydrogenase 167 276 3.2E-18 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 Gene3D G3DSA:3.90.180.10 1 163 1.7E-39 T 19-04-2016 IPR011032 GroES-like AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 SUPERFAMILY SSF51735 122 297 7.93E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 Gene3D G3DSA:3.40.50.720 164 300 4.2E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 SMART SM00829 10 339 2.6E-12 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 89 2.5E-5 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 SUPERFAMILY SSF50129 1 142 1.19E-33 T 19-04-2016 IPR011032 GroES-like AMED_4461 0dc5536d521ffeb7708b1d20eec429ef 345 PANTHER PTHR11695 15 343 2.4E-66 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8709 8aed8c4cd79c33dd7130e55df4347c86 395 Gene3D G3DSA:3.30.2010.10 171 256 7.5E-13 T 19-04-2016 AMED_8709 8aed8c4cd79c33dd7130e55df4347c86 395 PANTHER PTHR10120 143 367 8.0E-20 T 19-04-2016 AMED_8709 8aed8c4cd79c33dd7130e55df4347c86 395 PANTHER PTHR10120:SF19 143 367 8.0E-20 T 19-04-2016 AMED_8709 8aed8c4cd79c33dd7130e55df4347c86 395 Pfam PF01435 Peptidase family M48 184 367 1.9E-19 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_3129 5de36d4f3a6bb53c7dc5ee62b992c548 259 PANTHER PTHR11941:SF95 7 255 2.3E-64 T 19-04-2016 AMED_3129 5de36d4f3a6bb53c7dc5ee62b992c548 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 255 3.5E-42 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3129 5de36d4f3a6bb53c7dc5ee62b992c548 259 Gene3D G3DSA:3.90.226.10 4 255 4.3E-66 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3129 5de36d4f3a6bb53c7dc5ee62b992c548 259 PANTHER PTHR11941 7 255 2.3E-64 T 19-04-2016 AMED_3129 5de36d4f3a6bb53c7dc5ee62b992c548 259 SUPERFAMILY SSF52096 3 256 6.22E-67 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4938 706d82eee0e075c39ac246d78abe1773 194 PANTHER PTHR30055:SF79 1 188 3.3E-45 T 19-04-2016 AMED_4938 706d82eee0e075c39ac246d78abe1773 194 SUPERFAMILY SSF46689 2 75 2.1E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4938 706d82eee0e075c39ac246d78abe1773 194 Gene3D G3DSA:1.10.357.10 69 191 3.8E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4938 706d82eee0e075c39ac246d78abe1773 194 Pfam PF13977 Bacterial transcriptional repressor 81 192 7.6E-7 T 19-04-2016 AMED_4938 706d82eee0e075c39ac246d78abe1773 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 3.1E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4938 706d82eee0e075c39ac246d78abe1773 194 Gene3D G3DSA:1.10.10.60 1 64 1.1E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4938 706d82eee0e075c39ac246d78abe1773 194 SUPERFAMILY SSF48498 78 191 1.26E-24 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4938 706d82eee0e075c39ac246d78abe1773 194 PANTHER PTHR30055 1 188 3.3E-45 T 19-04-2016 AMED_8748 a96f4d61502ba68db08c553116275937 799 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 207 338 3.4E-45 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_8748 a96f4d61502ba68db08c553116275937 799 SMART SM00382 203 342 3.1E-25 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8748 a96f4d61502ba68db08c553116275937 799 Gene3D G3DSA:1.10.8.60 349 413 3.4E-20 T 19-04-2016 AMED_8748 a96f4d61502ba68db08c553116275937 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 211 230 9.5E-5 T 19-04-2016 AMED_8748 a96f4d61502ba68db08c553116275937 799 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 501 520 9.5E-5 T 19-04-2016 AMED_8748 a96f4d61502ba68db08c553116275937 799 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 120 610 4.0E-225 T 19-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 AMED_8748 a96f4d61502ba68db08c553116275937 799 Pfam PF01434 Peptidase family M41 403 609 2.4E-77 T 19-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 AMED_8748 a96f4d61502ba68db08c553116275937 799 PANTHER PTHR23076 113 619 2.8E-288 T 19-04-2016 AMED_8748 a96f4d61502ba68db08c553116275937 799 SUPERFAMILY SSF52540 163 410 1.17E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8748 a96f4d61502ba68db08c553116275937 799 ProSitePatterns PS00674 AAA-protein family signature. 310 328 - T 19-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMED_8748 a96f4d61502ba68db08c553116275937 799 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 646 35.977 T 19-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 AMED_8748 a96f4d61502ba68db08c553116275937 799 SUPERFAMILY SSF140990 421 614 1.03E-67 T 19-04-2016 AMED_8748 a96f4d61502ba68db08c553116275937 799 Gene3D G3DSA:3.40.50.300 163 348 4.9E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7845 d375cb12c12fb509d4a04b544d7d90bf 169 Pfam PF03703 Bacterial PH domain 79 155 1.2E-15 T 19-04-2016 IPR005182 Domain of unknown function DUF304 AMED_7845 d375cb12c12fb509d4a04b544d7d90bf 169 PANTHER PTHR34473 11 169 4.8E-27 T 19-04-2016 AMED_7845 d375cb12c12fb509d4a04b544d7d90bf 169 PANTHER PTHR34473:SF2 11 169 4.8E-27 T 19-04-2016 AMED_8692 98532b5a9b8938bd04b4de3482ae70c2 216 SMART SM01007 8 187 3.6E-60 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_8692 98532b5a9b8938bd04b4de3482ae70c2 216 SUPERFAMILY SSF53639 3 215 7.26E-63 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_8692 98532b5a9b8938bd04b4de3482ae70c2 216 PANTHER PTHR22789 1 215 1.8E-76 T 19-04-2016 AMED_8692 98532b5a9b8938bd04b4de3482ae70c2 216 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 187 1.2E-45 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_8692 98532b5a9b8938bd04b4de3482ae70c2 216 PANTHER PTHR22789:SF0 1 215 1.8E-76 T 19-04-2016 AMED_8692 98532b5a9b8938bd04b4de3482ae70c2 216 Gene3D G3DSA:3.40.225.10 3 215 4.3E-66 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 Gene3D G3DSA:3.40.50.10210 74 330 5.3E-101 T 19-04-2016 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 SUPERFAMILY SSF52733 9 349 2.75E-104 T 19-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 Gene3D G3DSA:1.10.1610.10 9 73 4.2E-29 T 19-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 350 34.934 T 19-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 Pfam PF02277 Phosphoribosyltransferase 11 348 3.8E-124 T 19-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 PANTHER PTHR21712 11 349 7.5E-146 T 19-04-2016 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 PANTHER PTHR21712:SF33 11 349 7.5E-146 T 19-04-2016 AMED_2180 2ddad3cb9242ebaab158e31c2f710994 358 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 348 4.2E-116 T 19-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 SMART SM00387 560 670 1.0E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PRINTS PR01217 Proline rich extensin signature 813 838 5.6E-9 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PRINTS PR01217 Proline rich extensin signature 675 691 5.6E-9 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PRINTS PR01217 Proline rich extensin signature 773 790 5.6E-9 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PRINTS PR01217 Proline rich extensin signature 706 727 5.6E-9 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PANTHER PTHR24423 428 444 1.7E-32 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PANTHER PTHR24423:SF468 428 444 1.7E-32 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 564 666 3.0E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PANTHER PTHR24423:SF468 469 713 1.7E-32 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 Pfam PF08376 Nitrate and nitrite sensing 97 335 1.4E-35 T 19-04-2016 IPR013587 Nitrate/nitrite sensing protein AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 PANTHER PTHR24423 469 713 1.7E-32 T 19-04-2016 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 Gene3D G3DSA:3.30.565.10 563 669 1.5E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 Pfam PF00672 HAMP domain 355 444 5.8E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 SUPERFAMILY SSF55874 551 667 1.01E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8544 03fddd1dc7caecd12b45345fdc303e33 943 SMART SM00304 373 448 9.8E-4 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3830 5166af5955e0c4b0e71fb1a69cb8759b 163 Gene3D G3DSA:3.10.129.10 12 154 4.7E-29 T 19-04-2016 IPR029069 HotDog domain AMED_3830 5166af5955e0c4b0e71fb1a69cb8759b 163 PANTHER PTHR13078 9 154 5.8E-23 T 19-04-2016 AMED_3830 5166af5955e0c4b0e71fb1a69cb8759b 163 Pfam PF13452 N-terminal half of MaoC dehydratase 21 145 6.5E-8 T 19-04-2016 AMED_3830 5166af5955e0c4b0e71fb1a69cb8759b 163 SUPERFAMILY SSF54637 12 157 1.01E-26 T 19-04-2016 IPR029069 HotDog domain AMED_1610 a68ff0b7a2afb6f1520102762bfdbf93 131 Gene3D G3DSA:3.40.250.10 4 125 4.7E-24 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1610 a68ff0b7a2afb6f1520102762bfdbf93 131 Pfam PF00581 Rhodanese-like domain 21 117 2.8E-10 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1610 a68ff0b7a2afb6f1520102762bfdbf93 131 SUPERFAMILY SSF52821 7 125 3.8E-21 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1610 a68ff0b7a2afb6f1520102762bfdbf93 131 SMART SM00450 18 121 2.4E-15 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 PANTHER PTHR10795 20 284 7.4E-61 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 PANTHER PTHR10795:SF389 20 284 7.4E-61 T 19-04-2016 AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 Pfam PF00082 Subtilase family 42 268 4.9E-27 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 Gene3D G3DSA:3.40.50.200 19 274 3.9E-68 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 SUPERFAMILY SSF52743 19 275 1.7E-59 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 PRINTS PR00723 Subtilisin serine protease family (S8) signature 41 60 4.5E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 PRINTS PR00723 Subtilisin serine protease family (S8) signature 79 92 4.5E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 PRINTS PR00723 Subtilisin serine protease family (S8) signature 230 246 4.5E-18 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1758 c68de016bfb71f3a07b97924892fadb5 289 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 46 57 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 Pfam PF01171 PP-loop family 26 194 5.5E-30 T 19-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 13 302 18.664 T 19-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 Pfam PF09179 TilS substrate binding domain 243 308 2.4E-13 T 19-04-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 26 198 3.0E-33 T 19-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 SUPERFAMILY SSF82829 208 307 4.97E-18 T 19-04-2016 AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 SUPERFAMILY SSF52402 20 227 5.95E-43 T 19-04-2016 AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 PANTHER PTHR11807 26 288 5.0E-43 T 19-04-2016 AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 Gene3D G3DSA:3.40.50.620 18 131 3.3E-7 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_8754 6bbbe8d4cabaffff1287ee1f88da5959 319 PANTHER PTHR11807:SF2 26 288 5.0E-43 T 19-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 Gene3D G3DSA:1.10.1660.10 62 137 1.1E-17 T 19-04-2016 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 8 145 2.3E-62 T 19-04-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 9.5E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 9.5E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 9.5E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 Gene3D G3DSA:1.10.1660.10 6 61 3.4E-22 T 19-04-2016 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 PANTHER PTHR30204 1 137 1.6E-61 T 19-04-2016 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 SMART SM00422 8 76 4.2E-25 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 Pfam PF00376 MerR family regulatory protein 9 45 1.2E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 PANTHER PTHR30204:SF0 1 137 1.6E-61 T 19-04-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMED_2261 bd20b9481b09cebead719bacf78a0327 153 Pfam PF09278 MerR, DNA binding 50 115 5.0E-20 T 19-04-2016 IPR015358 Transcription regulator MerR, DNA binding AMED_2261 bd20b9481b09cebead719bacf78a0327 153 SUPERFAMILY SSF46955 8 130 9.16E-30 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 Gene3D G3DSA:3.40.47.10 270 412 4.1E-49 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 PANTHER PTHR11712 5 412 6.5E-153 T 19-04-2016 AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 SMART SM00825 Beta-ketoacyl synthase 6 406 7.1E-15 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 261 372 3.1E-27 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 252 6.2E-55 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 SUPERFAMILY SSF53901 220 412 1.03E-61 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 SUPERFAMILY SSF53901 5 258 6.26E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2099 53a886364da49bc12111c74cf6d95e8a 414 Gene3D G3DSA:3.40.47.10 8 266 2.2E-65 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7082 2dd479a5b519ae531ed6704e6add56c7 191 PANTHER PTHR11046:SF5 1 187 1.3E-106 T 19-04-2016 AMED_7082 2dd479a5b519ae531ed6704e6add56c7 191 Pfam PF00929 Exonuclease 1 157 1.7E-23 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMED_7082 2dd479a5b519ae531ed6704e6add56c7 191 SUPERFAMILY SSF53098 1 166 7.08E-36 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7082 2dd479a5b519ae531ed6704e6add56c7 191 PANTHER PTHR11046 1 187 1.3E-106 T 19-04-2016 AMED_7082 2dd479a5b519ae531ed6704e6add56c7 191 SMART SM00479 1 168 3.0E-18 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMED_7082 2dd479a5b519ae531ed6704e6add56c7 191 Gene3D G3DSA:3.30.420.10 1 167 1.4E-60 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PANTHER PTHR13789:SF246 2 351 2.9E-95 T 19-04-2016 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 Pfam PF01494 FAD binding domain 5 307 3.0E-16 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PANTHER PTHR13789 2 351 2.9E-95 T 19-04-2016 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 SUPERFAMILY SSF51905 258 336 1.17E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 SUPERFAMILY SSF51905 5 164 1.17E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 2.3E-10 T 19-04-2016 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.3E-10 T 19-04-2016 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 286 2.3E-10 T 19-04-2016 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 Gene3D G3DSA:3.50.50.60 4 170 2.0E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5175 bc72b06c180ec30026d7ecc8ab8a6aaf 383 Gene3D G3DSA:3.50.50.60 259 330 2.0E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8572 da4a5374afbdbb826ec8dfe659734a5c 265 SUPERFAMILY SSF53613 3 261 1.87E-72 T 19-04-2016 IPR029056 Ribokinase-like AMED_8572 da4a5374afbdbb826ec8dfe659734a5c 265 Pfam PF08543 Phosphomethylpyrimidine kinase 13 257 9.8E-89 T 19-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 AMED_8572 da4a5374afbdbb826ec8dfe659734a5c 265 PANTHER PTHR20858 2 261 3.8E-106 T 19-04-2016 AMED_8572 da4a5374afbdbb826ec8dfe659734a5c 265 Gene3D G3DSA:3.40.1190.20 5 259 8.5E-94 T 19-04-2016 IPR029056 Ribokinase-like AMED_8572 da4a5374afbdbb826ec8dfe659734a5c 265 PANTHER PTHR20858:SF17 2 261 3.8E-106 T 19-04-2016 AMED_8572 da4a5374afbdbb826ec8dfe659734a5c 265 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 259 1.3E-88 T 19-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 SMART SM00304 200 252 4.1E-15 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 SUPERFAMILY SSF47384 244 325 8.44E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 Gene3D G3DSA:1.10.287.130 251 311 2.8E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 324 1.0E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 SMART SM00388 260 324 6.5E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 Gene3D G3DSA:3.30.565.10 312 467 4.7E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6914 5736620944abffc8ec8de530c01f85f4 472 PANTHER PTHR24423 194 467 5.2E-61 T 19-04-2016 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 467 2.1E-18 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6914 5736620944abffc8ec8de530c01f85f4 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 411 9.3E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 425 9.3E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 9.3E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 SUPERFAMILY SSF158472 200 251 1.83E-10 T 19-04-2016 AMED_6914 5736620944abffc8ec8de530c01f85f4 472 SUPERFAMILY SSF55874 313 467 4.45E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6914 5736620944abffc8ec8de530c01f85f4 472 SMART SM00387 362 469 2.9E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6914 5736620944abffc8ec8de530c01f85f4 472 Pfam PF00672 HAMP domain 183 247 3.7E-14 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 Gene3D G3DSA:3.40.50.300 512 631 1.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 1 198 4.8E-23 T 19-04-2016 IPR006483 CRISPR-associated Cas3-HD domain AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 Gene3D G3DSA:3.40.50.300 249 449 7.1E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 270 658 1.0E-56 T 19-04-2016 IPR006474 Helicase Cas3, CRISPR-associated, core AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 SUPERFAMILY SSF52540 265 319 1.14E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 SUPERFAMILY SSF52540 494 631 1.14E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 SUPERFAMILY SSF52540 354 444 1.14E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5814 d8dc7e8bb5ee2083fd55577090752f94 759 Pfam PF00270 DEAD/DEAH box helicase 267 444 3.3E-6 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_3223 8ba60993f70c33a8ba558212d7fb9e89 398 Gene3D G3DSA:1.20.1250.20 192 378 1.1E-10 T 19-04-2016 AMED_3223 8ba60993f70c33a8ba558212d7fb9e89 398 Gene3D G3DSA:1.20.1250.20 12 175 3.9E-11 T 19-04-2016 AMED_3223 8ba60993f70c33a8ba558212d7fb9e89 398 SUPERFAMILY SSF103473 6 387 3.92E-30 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3223 8ba60993f70c33a8ba558212d7fb9e89 398 Pfam PF07690 Major Facilitator Superfamily 15 352 9.9E-19 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3223 8ba60993f70c33a8ba558212d7fb9e89 398 PANTHER PTHR23517 16 394 1.2E-12 T 19-04-2016 AMED_2326 e9e82fdd84454481f82f97eef8e3187f 294 Pfam PF02219 Methylenetetrahydrofolate reductase 12 288 1.8E-88 T 19-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 AMED_2326 e9e82fdd84454481f82f97eef8e3187f 294 Gene3D G3DSA:3.20.20.220 3 291 4.4E-97 T 19-04-2016 IPR029041 FAD-linked oxidoreductase-like AMED_2326 e9e82fdd84454481f82f97eef8e3187f 294 SUPERFAMILY SSF51730 3 290 4.71E-88 T 19-04-2016 IPR029041 FAD-linked oxidoreductase-like AMED_2326 e9e82fdd84454481f82f97eef8e3187f 294 PANTHER PTHR21091:SF31 146 290 1.5E-30 T 19-04-2016 AMED_2326 e9e82fdd84454481f82f97eef8e3187f 294 PANTHER PTHR21091 146 290 1.5E-30 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 Gene3D G3DSA:1.10.275.10 9 114 9.8E-35 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 TIGRFAM TIGR00838 argH: argininosuccinate lyase 10 461 2.0E-181 T 19-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PANTHER PTHR11444:SF3 9 463 3.0E-202 T 19-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 Pfam PF00206 Lyase 20 308 6.9E-69 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 Gene3D G3DSA:1.10.40.30 383 439 2.6E-27 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PANTHER PTHR11444 9 463 3.0E-202 T 19-04-2016 IPR000362 Fumarate lyase family AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 SUPERFAMILY SSF48557 13 463 5.18E-135 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 239 266 2.4E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 110 128 2.4E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 155 173 2.4E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00149 Fumarate lyase superfamily signature 283 299 2.4E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 Pfam PF14698 Argininosuccinate lyase C-terminal 371 439 2.6E-21 T 19-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 283 299 1.6E-55 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 150 170 1.6E-55 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 239 263 1.6E-55 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 109 131 1.6E-55 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 318 337 1.6E-55 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 PRINTS PR00145 Argininosuccinate lyase family signature 201 217 1.6E-55 T 19-04-2016 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 Hamap MF_00006 Argininosuccinate lyase [argH]. 9 461 39.953 T 19-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 ProSitePatterns PS00163 Fumarate lyases signature. 283 292 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMED_6037 793b6f7aacc6ef1094dd9610e36b8f2d 471 Gene3D G3DSA:1.20.200.10 115 382 3.9E-97 T 19-04-2016 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 Pfam PF08220 DeoR-like helix-turn-helix domain 23 73 4.5E-8 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 Gene3D G3DSA:1.10.10.10 22 72 4.4E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 ProSitePatterns PS00894 DeoR-type HTH domain signature. 23 57 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 Gene3D G3DSA:3.40.50.1360 95 229 1.4E-11 T 19-04-2016 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 SMART SM01134 90 248 1.3E-54 T 19-04-2016 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 SUPERFAMILY SSF46785 21 78 1.1E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 SMART SM00420 23 75 2.8E-4 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 Pfam PF00455 DeoR C terminal sensor domain 92 246 7.7E-41 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 PANTHER PTHR30363:SF1 18 268 3.0E-58 T 19-04-2016 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 SUPERFAMILY SSF100950 92 247 7.01E-25 T 19-04-2016 AMED_0738 fc50eaa420bd4a31fd51be4a4f59b7de 278 PANTHER PTHR30363 18 268 3.0E-58 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 PANTHER PTHR30290 124 514 1.8E-104 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 PANTHER PTHR30290 1 106 1.8E-104 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 44 435 2.1E-75 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 PANTHER PTHR30290:SF14 124 514 1.8E-104 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 PANTHER PTHR30290:SF14 1 106 1.8E-104 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 PIRSF PIRSF002741 1 514 1.3E-83 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 SUPERFAMILY SSF53850 2 514 1.18E-107 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 Gene3D G3DSA:3.10.105.10 269 485 1.7E-43 T 19-04-2016 AMED_8902 490dd437cf9f3d038736d9ec0a3fc31d 515 Gene3D G3DSA:3.90.76.10 9 199 4.4E-40 T 19-04-2016 AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 Gene3D G3DSA:3.40.50.2300 45 170 1.6E-28 T 19-04-2016 AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 SUPERFAMILY SSF53822 51 353 2.55E-62 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 TIGRFAM TIGR02637 RhaS: rhamnose ABC transporter, rhamnose-binding protein 54 353 6.4E-118 T 19-04-2016 IPR013459 Rhamnose-binding protein GO:0015762 AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 PANTHER PTHR32196:SF1 41 319 1.6E-85 T 19-04-2016 IPR030159 Autoinducer 2-binding protein LsrB/rhamnose-binding protein RhaS GO:0043190 AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 Pfam PF13407 Periplasmic binding protein domain 54 310 2.3E-53 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 PANTHER PTHR32196 41 319 1.6E-85 T 19-04-2016 AMED_4542 fcd206420cd6ab92475318b72a65dd36 353 Gene3D G3DSA:3.40.50.2300 171 302 2.1E-30 T 19-04-2016 AMED_1888 8be8e16202d95b9a4f0941aab16b9b0f 292 PANTHER PTHR12110:SF4 8 262 2.5E-28 T 19-04-2016 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 AMED_1888 8be8e16202d95b9a4f0941aab16b9b0f 292 Gene3D G3DSA:3.20.20.150 4 288 4.9E-64 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_1888 8be8e16202d95b9a4f0941aab16b9b0f 292 SUPERFAMILY SSF51658 26 287 1.08E-49 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_1888 8be8e16202d95b9a4f0941aab16b9b0f 292 Pfam PF01261 Xylose isomerase-like TIM barrel 34 239 3.5E-26 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_1888 8be8e16202d95b9a4f0941aab16b9b0f 292 PANTHER PTHR12110 8 262 2.5E-28 T 19-04-2016 AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 Pfam PF00107 Zinc-binding dehydrogenase 157 285 2.0E-24 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 SUPERFAMILY SSF50129 2 139 2.97E-40 T 19-04-2016 IPR011032 GroES-like AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 PANTHER PTHR11695 22 335 1.4E-130 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 Gene3D G3DSA:3.90.180.10 3 139 3.1E-54 T 19-04-2016 IPR011032 GroES-like AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 Pfam PF16884 N-terminal domain of oxidoreductase 6 110 5.7E-40 T 19-04-2016 AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 PANTHER PTHR11695:SF528 22 335 1.4E-130 T 19-04-2016 AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 Gene3D G3DSA:3.40.50.720 140 301 3.1E-71 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 SUPERFAMILY SSF51735 122 298 3.29E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0441 f052cfecf07214e910a3ffa03998a93c 335 SMART SM00829 18 331 1.3E-8 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7038 efbdd41447865a1279bd368e97c8c9fc 290 PANTHER PTHR10366 2 286 9.2E-87 T 19-04-2016 AMED_7038 efbdd41447865a1279bd368e97c8c9fc 290 SUPERFAMILY SSF51735 1 277 1.74E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7038 efbdd41447865a1279bd368e97c8c9fc 290 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 210 2.8E-15 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_7038 efbdd41447865a1279bd368e97c8c9fc 290 PANTHER PTHR10366:SF475 2 286 9.2E-87 T 19-04-2016 AMED_7038 efbdd41447865a1279bd368e97c8c9fc 290 Gene3D G3DSA:3.40.50.720 1 277 6.8E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7958 9b6c7d1402fbfac8c30fed8db5a156a3 219 Gene3D G3DSA:1.10.3720.10 11 203 2.3E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7958 9b6c7d1402fbfac8c30fed8db5a156a3 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 202 1.5E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7958 9b6c7d1402fbfac8c30fed8db5a156a3 219 PANTHER PTHR30151 11 215 7.1E-40 T 19-04-2016 AMED_7958 9b6c7d1402fbfac8c30fed8db5a156a3 219 SUPERFAMILY SSF161098 15 201 9.55E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7958 9b6c7d1402fbfac8c30fed8db5a156a3 219 PANTHER PTHR30151:SF23 11 215 7.1E-40 T 19-04-2016 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:1.10.150.80 544 609 1.9E-18 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF09382 RQC domain 406 519 1.5E-33 T 19-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF00270 DEAD/DEAH box helicase 28 186 2.0E-17 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SUPERFAMILY SSF52540 207 460 2.72E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF16124 RecQ zinc-binding 343 404 7.1E-18 T 19-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00487 21 217 2.5E-27 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:1.10.10.10 345 520 2.6E-54 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00956 411 517 1.9E-43 T 19-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF00271 Helicase conserved C-terminal domain 225 331 1.0E-15 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 PANTHER PTHR13710 11 609 6.9E-284 T 19-04-2016 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Pfam PF00570 HRDC domain 544 609 7.4E-23 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SUPERFAMILY SSF52540 8 196 5.86E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:3.40.50.300 206 344 3.7E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 14 609 4.2E-236 T 19-04-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00490 250 331 1.8E-23 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SUPERFAMILY SSF47819 539 611 5.23E-22 T 19-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 Gene3D G3DSA:3.40.50.300 11 201 3.2E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 PANTHER PTHR13710:SF81 11 609 6.9E-284 T 19-04-2016 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 SMART SM00341 539 611 1.5E-11 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_3004 5d05fc762f8aa51da47eb976699776f0 612 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 14 466 3.5E-150 T 19-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 6 244 1.2E-57 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 PANTHER PTHR21139 2 248 4.6E-114 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 Gene3D G3DSA:3.20.20.70 3 254 2.5E-105 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 ProSitePatterns PS00171 Triosephosphate isomerase active site. 170 180 - T 19-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 SUPERFAMILY SSF51351 2 254 6.81E-91 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 3 255 39.799 T 19-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMED_2800 4f13f2f89fe82da9701666d32e841d19 261 Pfam PF00121 Triosephosphate isomerase 6 252 1.6E-89 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMED_4636 5cff3c33b0d141c8d6e20bf3d9589043 280 PANTHER PTHR30622 1 274 9.3E-118 T 19-04-2016 AMED_4636 5cff3c33b0d141c8d6e20bf3d9589043 280 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 266 17.374 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_4636 5cff3c33b0d141c8d6e20bf3d9589043 280 Pfam PF02673 Bacitracin resistance protein BacA 6 261 1.7E-72 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_4636 5cff3c33b0d141c8d6e20bf3d9589043 280 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 6 259 6.3E-76 T 19-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMED_4636 5cff3c33b0d141c8d6e20bf3d9589043 280 PANTHER PTHR30622:SF4 1 274 9.3E-118 T 19-04-2016 AMED_4344 f23a7549d04243e9ab72e5ee1b048188 271 SUPERFAMILY SSF161098 4 270 1.96E-66 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4344 f23a7549d04243e9ab72e5ee1b048188 271 Gene3D G3DSA:1.10.3720.10 3 258 2.1E-55 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4344 f23a7549d04243e9ab72e5ee1b048188 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 264 5.9E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4344 f23a7549d04243e9ab72e5ee1b048188 271 PANTHER PTHR32243:SF26 5 271 2.1E-94 T 19-04-2016 AMED_4344 f23a7549d04243e9ab72e5ee1b048188 271 PANTHER PTHR32243 5 271 2.1E-94 T 19-04-2016 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 PANTHER PTHR30328:SF6 3 120 7.0E-21 T 19-04-2016 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 Gene3D G3DSA:1.10.357.10 8 172 3.7E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 PANTHER PTHR30328 3 120 7.0E-21 T 19-04-2016 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 64 2.3E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0443 4d7ce5f0d360232bdf54a5a0cac5e19c 203 SUPERFAMILY SSF46689 8 90 3.88E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6597 b9d9f5696f5994492b98975041108c79 364 Gene3D G3DSA:2.30.39.10 311 364 1.5E-30 T 19-04-2016 AMED_6597 b9d9f5696f5994492b98975041108c79 364 Gene3D G3DSA:2.30.39.10 168 246 1.5E-30 T 19-04-2016 AMED_6597 b9d9f5696f5994492b98975041108c79 364 SUPERFAMILY SSF56574 3 364 1.96E-87 T 19-04-2016 IPR023796 Serpin domain AMED_6597 b9d9f5696f5994492b98975041108c79 364 Pfam PF00079 Serpin (serine protease inhibitor) 8 364 1.1E-80 T 19-04-2016 IPR023796 Serpin domain AMED_6597 b9d9f5696f5994492b98975041108c79 364 SMART SM00093 11 364 3.5E-70 T 19-04-2016 IPR023796 Serpin domain AMED_6597 b9d9f5696f5994492b98975041108c79 364 PANTHER PTHR11461 8 364 1.4E-101 T 19-04-2016 IPR000215 Serpin family GO:0005615 AMED_6597 b9d9f5696f5994492b98975041108c79 364 Gene3D G3DSA:3.30.497.10 258 310 1.3E-58 T 19-04-2016 AMED_6597 b9d9f5696f5994492b98975041108c79 364 Gene3D G3DSA:3.30.497.10 7 167 1.3E-58 T 19-04-2016 AMED_6597 b9d9f5696f5994492b98975041108c79 364 ProSitePatterns PS00284 Serpins signature. 337 347 - T 19-04-2016 IPR023795 Serpin, conserved site AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 Gene3D G3DSA:3.40.50.720 210 248 4.9E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 Gene3D G3DSA:3.40.50.720 15 167 4.9E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 PANTHER PTHR10366 16 300 4.7E-42 T 19-04-2016 AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 Pfam PF01370 NAD dependent epimerase/dehydratase family 18 232 1.1E-26 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 SUPERFAMILY SSF51735 16 301 5.33E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 Gene3D G3DSA:3.90.25.10 168 209 6.7E-19 T 19-04-2016 AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 Gene3D G3DSA:3.90.25.10 266 301 6.7E-19 T 19-04-2016 AMED_5449 cbf75ae82d177d90e8fa6476090c5c86 319 PANTHER PTHR10366:SF466 16 300 4.7E-42 T 19-04-2016 AMED_0950 455f86b2341e6c250fcedddf51ea2eb6 265 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 24 139 1.6E-18 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_0950 455f86b2341e6c250fcedddf51ea2eb6 265 Gene3D G3DSA:3.30.530.20 5 158 1.8E-44 T 19-04-2016 IPR023393 START-like domain AMED_0950 455f86b2341e6c250fcedddf51ea2eb6 265 SUPERFAMILY SSF55961 8 159 1.63E-36 T 19-04-2016 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 SUPERFAMILY SSF49384 354 446 5.3E-26 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 SMART SM00637 360 455 5.2E-20 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 Gene3D G3DSA:3.30.200.20 5 77 2.4E-24 T 19-04-2016 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 131 143 - T 19-04-2016 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 Pfam PF00069 Protein kinase domain 12 260 1.6E-47 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 Pfam PF00553 Cellulose binding domain 360 446 1.5E-22 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 Gene3D G3DSA:2.60.40.290 358 442 1.1E-26 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 Gene3D G3DSA:1.10.510.10 78 261 1.3E-47 T 19-04-2016 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 PANTHER PTHR24362 4 266 8.3E-77 T 19-04-2016 AMED_3200 f75569c4e2c160defe4a4b311d33f6eb 458 SUPERFAMILY SSF56112 8 330 1.18E-72 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 769 61.866 T 19-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 Pfam PF01966 HD domain 415 511 1.8E-9 T 19-04-2016 IPR006674 HD domain AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 PANTHER PTHR13734:SF45 58 572 1.6E-67 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF81301 22 151 1.82E-14 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 Gene3D G3DSA:1.10.3210.10 398 556 1.8E-19 T 19-04-2016 IPR006674 HD domain AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 PANTHER PTHR13734 58 572 1.6E-67 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 SMART SM00471 408 541 9.2E-6 T 19-04-2016 IPR003607 HD/PDEase domain AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 Gene3D G3DSA:3.30.460.10 24 84 6.0E-4 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 Gene3D G3DSA:3.30.70.260 699 750 4.8E-5 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF109604 380 487 4.71E-14 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF81593 155 271 8.63E-6 T 19-04-2016 AMED_1943 76c651809491383f4acee5eec1b1bf5f 769 SUPERFAMILY SSF55021 697 753 3.2E-6 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF52540 251 503 2.57E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Gene3D G3DSA:1.25.40.10 817 913 2.8E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Gene3D G3DSA:1.25.40.10 660 816 3.2E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF46894 3 91 2.24E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF48452 94 253 2.66E-20 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF03704 Bacterial transcriptional activator domain 98 236 7.0E-24 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF48452 665 836 6.07E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF00931 NB-ARC domain 266 501 1.4E-8 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SUPERFAMILY SSF48452 804 908 3.67E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00862 16 91 4.3E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF13424 Tetratricopeptide repeat 764 834 3.5E-10 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Gene3D G3DSA:1.10.10.10 11 94 5.3E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM01043 98 236 2.1E-28 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 PANTHER PTHR22845:SF4 201 584 1.0E-62 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 PANTHER PTHR22845 201 584 1.0E-62 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 PRINTS PR00364 Disease resistance protein signature 275 290 1.1E-5 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 PRINTS PR00364 Disease resistance protein signature 354 368 1.1E-5 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 PRINTS PR00364 Disease resistance protein signature 442 456 1.1E-5 T 19-04-2016 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 763 796 13.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 879 912 27.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 803 836 0.58 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 SMART SM00028 723 756 190.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5903 dcda96cb7adc6308acb7d02ac793bcdc 929 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 89 1.4E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7140 1b6da6c044dcbb9d57a3d346624d0e67 297 Gene3D G3DSA:3.10.180.10 160 265 7.8E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7140 1b6da6c044dcbb9d57a3d346624d0e67 297 SUPERFAMILY SSF54593 163 287 3.41E-9 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2824 5139802eca2e4565c3a6e3f068b7bfa3 321 PANTHER PTHR35457 17 321 3.0E-23 T 19-04-2016 AMED_2824 5139802eca2e4565c3a6e3f068b7bfa3 321 PANTHER PTHR35457:SF1 17 321 3.0E-23 T 19-04-2016 AMED_2824 5139802eca2e4565c3a6e3f068b7bfa3 321 Pfam PF02628 Cytochrome oxidase assembly protein 24 199 4.4E-13 T 19-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 AMED_9251 6ed83ae9179254405aff63b0dfeb98c2 281 PANTHER PTHR30011:SF14 11 267 8.0E-26 T 19-04-2016 AMED_9251 6ed83ae9179254405aff63b0dfeb98c2 281 SUPERFAMILY SSF51679 7 279 3.4E-46 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9251 6ed83ae9179254405aff63b0dfeb98c2 281 Pfam PF00296 Luciferase-like monooxygenase 11 237 7.9E-28 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9251 6ed83ae9179254405aff63b0dfeb98c2 281 PANTHER PTHR30011 11 267 8.0E-26 T 19-04-2016 AMED_9251 6ed83ae9179254405aff63b0dfeb98c2 281 Gene3D G3DSA:3.20.20.30 7 268 4.1E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9251 6ed83ae9179254405aff63b0dfeb98c2 281 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 4 281 6.7E-99 T 19-04-2016 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 Pfam PF01494 FAD binding domain 5 343 2.0E-35 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PANTHER PTHR13789:SF186 6 353 5.7E-73 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 4.2E-23 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 4.2E-23 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 345 4.2E-23 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 4.2E-23 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 4.2E-23 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 Gene3D G3DSA:3.50.50.60 5 177 5.8E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 Gene3D G3DSA:3.50.50.60 268 349 5.8E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 PANTHER PTHR13789 6 353 5.7E-73 T 19-04-2016 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 SUPERFAMILY SSF51905 267 354 4.37E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5092 6bdb8165bad8e99359dd1da96b7e2d58 374 SUPERFAMILY SSF51905 5 172 4.37E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 Pfam PF00561 alpha/beta hydrolase fold 35 162 1.1E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 PANTHER PTHR10992:SF778 14 294 4.0E-48 T 19-04-2016 AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 PANTHER PTHR10992 14 294 4.0E-48 T 19-04-2016 AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 Gene3D G3DSA:3.40.50.1820 14 292 2.2E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 SUPERFAMILY SSF53474 14 293 1.29E-66 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 PRINTS PR00412 Epoxide hydrolase signature 41 59 3.5E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 PRINTS PR00412 Epoxide hydrolase signature 269 291 3.5E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7565 79d308c7f079276ea9e50c7ee59c5cb5 303 PRINTS PR00412 Epoxide hydrolase signature 118 131 3.5E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PANTHER PTHR24322 12 138 3.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PANTHER PTHR24322 154 186 3.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 3.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.6E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 259 5.9E-51 T 19-04-2016 AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 Gene3D G3DSA:3.40.50.720 5 260 2.2E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4017 f0c098f565080d57ef88b9a47bbcf1a2 264 SUPERFAMILY SSF51735 7 259 3.12E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6590 977ebd32b695e07d90b360f43a48d8e3 188 Pfam PF02627 Carboxymuconolactone decarboxylase family 57 124 2.5E-6 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_6590 977ebd32b695e07d90b360f43a48d8e3 188 Gene3D G3DSA:1.20.1290.10 31 176 2.2E-34 T 19-04-2016 IPR029032 AhpD-like AMED_6590 977ebd32b695e07d90b360f43a48d8e3 188 SUPERFAMILY SSF69118 1 174 2.08E-37 T 19-04-2016 IPR029032 AhpD-like AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PANTHER PTHR24286 93 417 8.6E-62 T 19-04-2016 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 359 368 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 336 351 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 163 178 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 357 366 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 308 335 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 366 377 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 101 112 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 208 230 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PRINTS PR00359 B-class P450 signature 291 302 2.9E-38 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 PANTHER PTHR24286:SF42 93 417 8.6E-62 T 19-04-2016 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 Gene3D G3DSA:1.10.630.10 20 415 2.2E-92 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 Pfam PF00067 Cytochrome P450 292 387 6.5E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6238 8c3e7dfd1ec276e0dda675ec1a26ea95 418 SUPERFAMILY SSF48264 28 417 2.62E-74 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2223 0b3638bc3422343f35d166501b1b9d2d 336 PANTHER PTHR30573:SF0 18 331 7.1E-126 T 19-04-2016 AMED_2223 0b3638bc3422343f35d166501b1b9d2d 336 Pfam PF02445 Quinolinate synthetase A protein 23 328 1.6E-110 T 19-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 AMED_2223 0b3638bc3422343f35d166501b1b9d2d 336 SUPERFAMILY SSF142754 21 329 3.92E-101 T 19-04-2016 AMED_2223 0b3638bc3422343f35d166501b1b9d2d 336 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 22 329 1.7E-88 T 19-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 AMED_2223 0b3638bc3422343f35d166501b1b9d2d 336 PANTHER PTHR30573 18 331 7.1E-126 T 19-04-2016 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 19-04-2016 IPR020583 Inositol monophosphatase, metal-binding site AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PANTHER PTHR20854:SF4 1 261 1.6E-62 T 19-04-2016 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 Gene3D G3DSA:3.30.540.10 4 147 2.6E-41 T 19-04-2016 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PANTHER PTHR20854 1 261 1.6E-62 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 SUPERFAMILY SSF56655 6 259 4.32E-64 T 19-04-2016 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 Gene3D G3DSA:3.40.190.80 148 260 1.6E-25 T 19-04-2016 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 128 151 6.2E-42 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 6.2E-42 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 59 75 6.2E-42 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 6.2E-42 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 6.2E-42 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 6.2E-42 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_8345 e847870148675c277b3af9cd9cdac0bf 266 Pfam PF00459 Inositol monophosphatase family 7 247 9.1E-51 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 398 623 1.0E-83 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 825 879 5.8E-11 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.70.98.10 996 1285 7.2E-93 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SMART SM01038 1010 1283 7.8E-122 T 19-04-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49303 276 393 3.53E-20 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:3.20.20.80 827 875 1.7E-105 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:3.20.20.80 397 622 1.7E-105 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49303 872 983 1.2E-25 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.120.260 58 263 1.8E-75 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF51445 815 876 7.02E-6 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF51445 399 632 1.38E-73 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49899 648 805 9.26E-21 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PANTHER PTHR10066 845 1288 0.0 T 19-04-2016 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PANTHER PTHR10066 85 623 0.0 T 19-04-2016 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.40.320 884 982 9.5E-29 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.40.320 264 393 6.5E-29 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SMART SM00560 672 801 2.3E-25 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF49785 58 274 3.77E-61 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PANTHER PTHR10066:SF72 845 1288 0.0 T 19-04-2016 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PANTHER PTHR10066:SF72 85 623 0.0 T 19-04-2016 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF16353 Domain of unknown function(DUF4981) 891 982 3.5E-24 T 19-04-2016 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 445 470 - T 19-04-2016 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 435 453 6.2E-33 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 404 418 6.2E-33 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 506 521 6.2E-33 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 202 217 6.2E-33 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 PRINTS PR00132 Glycosyl hydrolase family 2 signature 578 593 6.2E-33 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 SUPERFAMILY SSF74650 998 1285 2.3E-84 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF00703 Glycosyl hydrolases family 2 276 393 1.7E-12 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 100 274 7.9E-39 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF02929 Beta galactosidase small chain 1012 1282 1.3E-75 T 19-04-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 658 803 2.3E-19 T 19-04-2016 AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 Gene3D G3DSA:2.60.120.200 656 807 1.4E-18 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5714 5b36949e0f1ff4ec7f9e43c6e8ab11d9 1303 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 506 520 - T 19-04-2016 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PANTHER PTHR11444 1 460 2.9E-215 T 19-04-2016 IPR000362 Fumarate lyase family AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 Pfam PF10415 Fumarase C C-terminus 404 461 1.3E-21 T 19-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 SUPERFAMILY SSF48557 6 460 1.57E-138 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 313 329 6.6E-33 T 19-04-2016 IPR000362 Fumarate lyase family AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 130 148 6.6E-33 T 19-04-2016 IPR000362 Fumarate lyase family AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 176 194 6.6E-33 T 19-04-2016 IPR000362 Fumarate lyase family AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00149 Fumarate lyase superfamily signature 267 294 6.6E-33 T 19-04-2016 IPR000362 Fumarate lyase family AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PANTHER PTHR11444:SF1 1 460 2.9E-215 T 19-04-2016 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 Pfam PF00206 Lyase 14 338 4.0E-98 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 Gene3D G3DSA:1.10.275.10 5 134 8.3E-54 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 ProSitePatterns PS00163 Fumarate lyases signature. 313 322 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00145 Argininosuccinate lyase family signature 171 191 2.9E-6 T 19-04-2016 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00145 Argininosuccinate lyase family signature 313 329 2.9E-6 T 19-04-2016 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 PRINTS PR00145 Argininosuccinate lyase family signature 129 151 2.9E-6 T 19-04-2016 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 6 463 79.177 T 19-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 Gene3D G3DSA:1.20.200.10 135 398 1.7E-89 T 19-04-2016 AMED_8062 7efbb375a1175a6ba89a04a0b36a3f00 465 Gene3D G3DSA:1.10.40.30 404 460 5.4E-23 T 19-04-2016 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PANTHER PTHR11985:SF16 1 505 2.6E-192 T 19-04-2016 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 24 36 3.3E-29 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 53 65 3.3E-29 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 371 383 3.3E-29 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 341 347 3.3E-29 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 37 47 3.3E-29 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 99 111 3.3E-29 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 PANTHER PTHR11985 1 505 2.6E-192 T 19-04-2016 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 Gene3D G3DSA:3.50.50.60 148 294 8.2E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 Gene3D G3DSA:3.50.50.60 23 115 8.2E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 Pfam PF01266 FAD dependent oxidoreductase 25 381 7.3E-45 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 404 509 3.9E-16 T 19-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 SUPERFAMILY SSF51905 289 350 7.77E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 SUPERFAMILY SSF51905 24 253 7.77E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 29 46 - T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8419 ed75a925680a7c84f0afce80f6e61186 513 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 376 386 - T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 PANTHER PTHR30055 1 184 1.4E-29 T 19-04-2016 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 PANTHER PTHR30055:SF10 1 184 1.4E-29 T 19-04-2016 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 58 8.4E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 Gene3D G3DSA:1.10.10.60 2 56 2.6E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 Gene3D G3DSA:1.10.357.10 57 187 1.6E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3850 5a2c8004c540b9150aea77c965abd53d 191 SUPERFAMILY SSF46689 5 67 3.73E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2954 1a33ec5608e934ffbf59223c752e8f13 251 PANTHER PTHR37461:SF1 1 251 1.8E-30 T 19-04-2016 AMED_2954 1a33ec5608e934ffbf59223c752e8f13 251 PANTHER PTHR37461 1 251 1.8E-30 T 19-04-2016 AMED_2954 1a33ec5608e934ffbf59223c752e8f13 251 Pfam PF10099 Anti-sigma-K factor rskA 53 244 1.1E-33 T 19-04-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Pfam PF00455 DeoR C terminal sensor domain 76 234 5.3E-46 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Gene3D G3DSA:3.40.50.1360 76 216 4.7E-14 T 19-04-2016 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 2.7E-15 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 PANTHER PTHR30363 1 256 5.1E-73 T 19-04-2016 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 Gene3D G3DSA:1.10.10.10 6 57 8.2E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SMART SM01134 74 236 1.6E-55 T 19-04-2016 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SMART SM00420 6 58 9.8E-16 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SUPERFAMILY SSF100950 76 236 3.45E-29 T 19-04-2016 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 PANTHER PTHR30363:SF13 1 256 5.1E-73 T 19-04-2016 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.0E-7 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.0E-7 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_8331 1e22ba58d82ca9d54b1ab8e0d3f55a3d 266 SUPERFAMILY SSF46785 5 59 5.13E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF53323 696 893 4.18E-20 T 19-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF52518 46 191 5.0E-11 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 434 523 2.6E-7 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 PANTHER PTHR18968 407 732 2.3E-126 T 19-04-2016 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF52922 261 383 1.41E-7 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 Gene3D G3DSA:3.40.50.970 46 210 1.8E-5 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 Gene3D G3DSA:3.40.920.10 696 889 1.0E-14 T 19-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 SUPERFAMILY SSF52518 414 595 1.47E-13 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 PANTHER PTHR18968:SF134 407 732 2.3E-126 T 19-04-2016 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 704 889 4.9E-23 T 19-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AMED_5858 95be289a6da602b89c8878d372fdc6c4 1121 Gene3D G3DSA:3.40.50.970 406 624 2.1E-11 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 PANTHER PTHR10055 3 342 2.3E-174 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 25 41 7.6E-29 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 152 173 7.6E-29 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 75 94 7.6E-29 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 205 215 7.6E-29 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 SUPERFAMILY SSF52374 13 338 1.13E-96 T 19-04-2016 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 Gene3D G3DSA:1.10.240.10 218 331 9.7E-20 T 19-04-2016 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 20 30 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 Pfam PF00579 tRNA synthetases class I (W and Y) 9 291 3.9E-84 T 19-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 11 339 41.788 T 19-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 PANTHER PTHR10055:SF10 3 342 2.3E-174 T 19-04-2016 AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 Gene3D G3DSA:3.40.50.620 9 217 1.2E-87 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_0840 d1c57b964623c7859d8dd4dc9dbf1786 343 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 11 338 2.5E-105 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 PANTHER PTHR30055 1 185 1.2E-38 T 19-04-2016 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 Gene3D G3DSA:1.10.357.10 6 189 1.5E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 SUPERFAMILY SSF48498 85 186 6.99E-10 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.6E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 PANTHER PTHR30055:SF19 1 185 1.2E-38 T 19-04-2016 AMED_6440 d0197f4e5e20d0eb490e4ab1dbd25d46 192 SUPERFAMILY SSF46689 6 82 2.44E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 Gene3D G3DSA:3.30.565.10 185 355 4.2E-45 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 280 294 4.4E-20 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 308 4.4E-20 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 333 4.4E-20 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 4.4E-20 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 SUPERFAMILY SSF55874 188 357 1.44E-44 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 Gene3D G3DSA:1.10.287.130 128 184 1.3E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 243 353 1.7E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 197 6.3E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 SMART SM00387 243 355 3.6E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 SMART SM00388 132 198 3.2E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 SUPERFAMILY SSF47384 123 196 3.34E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 PANTHER PTHR24423:SF394 14 362 8.3E-77 T 19-04-2016 AMED_0459 d08c4d90c39a78347c5bab6c5922f54b 399 PANTHER PTHR24423 14 362 8.3E-77 T 19-04-2016 AMED_3555 a020977e4a2b0e2a40aa518ef303d216 589 PANTHER PTHR13943:SF48 44 120 4.9E-100 T 19-04-2016 AMED_3555 a020977e4a2b0e2a40aa518ef303d216 589 PANTHER PTHR13943 145 576 4.9E-100 T 19-04-2016 AMED_3555 a020977e4a2b0e2a40aa518ef303d216 589 Pfam PF07287 Protein of unknown function (DUF1446) 10 362 3.6E-119 T 19-04-2016 IPR010839 Protein of unknown function DUF1446 AMED_3555 a020977e4a2b0e2a40aa518ef303d216 589 PANTHER PTHR13943:SF48 145 576 4.9E-100 T 19-04-2016 AMED_3555 a020977e4a2b0e2a40aa518ef303d216 589 PANTHER PTHR13943 44 120 4.9E-100 T 19-04-2016 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 Pfam PF02278 Polysaccharide lyase family 8, super-sandwich domain 438 698 6.6E-70 T 19-04-2016 IPR003159 Polysaccharide lyase family 8, central domain GO:0005576|GO:0016829 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 SUPERFAMILY SSF49863 709 796 2.94E-17 T 19-04-2016 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 Gene3D G3DSA:2.70.98.10 437 698 8.6E-77 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 Pfam PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain 72 385 2.8E-66 T 19-04-2016 IPR012970 Polysaccharide lyase 8, N-terminal alpha-helical AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 SUPERFAMILY SSF74650 437 698 1.78E-70 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 PANTHER PTHR38481 110 741 1.0E-84 T 19-04-2016 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 SUPERFAMILY SSF48230 437 458 7.02E-70 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 SUPERFAMILY SSF48230 69 398 7.02E-70 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 PANTHER PTHR38481:SF1 110 741 1.0E-84 T 19-04-2016 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 Pfam PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain 710 773 4.9E-14 T 19-04-2016 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 Gene3D G3DSA:1.50.10.100 67 398 5.6E-87 T 19-04-2016 IPR012329 Polysaccharide lyase family 8, N-terminal GO:0005975|GO:0016837 AMED_5970 b6efd8f5271afabbaf91e1e0376ecaac 797 Gene3D G3DSA:2.60.220.10 709 783 2.1E-20 T 19-04-2016 IPR004103 Polysaccharide lyase family 8, C-terminal GO:0005576|GO:0016829 AMED_6284 85596586c83cbf65d926eb922fed9948 478 Pfam PF00919 Uncharacterized protein family UPF0004 13 107 5.1E-29 T 19-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 AMED_6284 85596586c83cbf65d926eb922fed9948 478 PANTHER PTHR11918 2 478 1.4E-161 T 19-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein AMED_6284 85596586c83cbf65d926eb922fed9948 478 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 13 469 1.8E-121 T 19-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMED_6284 85596586c83cbf65d926eb922fed9948 478 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 13 467 9.8E-102 T 19-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 AMED_6284 85596586c83cbf65d926eb922fed9948 478 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 12 472 56.596 T 19-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AMED_6284 85596586c83cbf65d926eb922fed9948 478 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 180 200 - T 19-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMED_6284 85596586c83cbf65d926eb922fed9948 478 SUPERFAMILY SSF102114 171 400 1.83E-44 T 19-04-2016 AMED_6284 85596586c83cbf65d926eb922fed9948 478 Gene3D G3DSA:3.80.30.20 176 407 1.2E-60 T 19-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe AMED_6284 85596586c83cbf65d926eb922fed9948 478 PANTHER PTHR11918:SF57 2 478 1.4E-161 T 19-04-2016 AMED_6284 85596586c83cbf65d926eb922fed9948 478 Gene3D G3DSA:2.40.50.140 411 473 9.9E-14 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6284 85596586c83cbf65d926eb922fed9948 478 SMART SM00729 176 393 9.9E-39 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_6284 85596586c83cbf65d926eb922fed9948 478 Pfam PF04055 Radical SAM superfamily 182 354 4.6E-22 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_1969 ba70e66ee4e587e9de7204b44cf8bc28 332 PANTHER PTHR32039 16 332 3.3E-65 T 19-04-2016 AMED_1969 ba70e66ee4e587e9de7204b44cf8bc28 332 SUPERFAMILY SSF102405 56 250 5.34E-30 T 19-04-2016 AMED_1969 ba70e66ee4e587e9de7204b44cf8bc28 332 Pfam PF02481 DNA recombination-mediator protein A 22 242 5.8E-66 T 19-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 AMED_1969 ba70e66ee4e587e9de7204b44cf8bc28 332 Gene3D G3DSA:3.40.50.450 75 220 3.1E-12 T 19-04-2016 AMED_1969 ba70e66ee4e587e9de7204b44cf8bc28 332 PANTHER PTHR32039:SF8 16 332 3.3E-65 T 19-04-2016 AMED_1969 ba70e66ee4e587e9de7204b44cf8bc28 332 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 24 250 3.7E-64 T 19-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 178 191 2.6E-22 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 294 308 2.6E-22 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 155 177 2.6E-22 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PRINTS PR00419 Adrenodoxin reductase family signature 220 230 2.6E-22 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:1.10.1060.10 3 155 3.6E-33 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PANTHER PTHR11938 344 482 1.6E-126 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PANTHER PTHR11938 38 327 1.6E-126 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 SUPERFAMILY SSF51971 153 416 7.46E-65 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 34 140 1.8E-19 T 19-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II AMED_2307 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:3.50.50.60 244 404 1.9E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 SUPERFAMILY SSF46548 5 164 1.26E-30 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:3.50.50.60 156 243 6.1E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PANTHER PTHR11938:SF75 344 482 1.6E-126 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 PANTHER PTHR11938:SF75 38 327 1.6E-126 T 19-04-2016 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 155 471 4.8E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 Gene3D G3DSA:3.50.50.60 405 487 2.0E-15 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 489 1.6E-184 T 19-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 AMED_2307 f27945756c411fc36bc8669a43a53fba 502 SUPERFAMILY SSF51971 399 479 7.53E-10 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SUPERFAMILY SSF52540 1075 1182 1.05E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SUPERFAMILY SSF52540 2 203 1.05E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1191 22.082 T 19-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 3 1189 1.2E-291 T 19-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PIRSF PIRSF005719 1 1197 3.6E-255 T 19-04-2016 IPR024704 Structural maintenance of chromosomes protein AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1182 3.5E-71 T 19-04-2016 IPR003395 RecF/RecN/SMC, N-terminal AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SUPERFAMILY SSF75553 470 671 8.76E-29 T 19-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937 334 760 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937 2 317 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937 787 938 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937:SF261 334 760 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937:SF261 2 317 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937:SF261 958 1195 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937:SF261 787 938 1.1E-292 T 19-04-2016 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 SMART SM00968 512 626 2.0E-23 T 19-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Pfam PF06470 SMC proteins Flexible Hinge Domain 512 626 3.7E-20 T 19-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Gene3D G3DSA:3.40.50.300 2 163 3.9E-88 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 Gene3D G3DSA:3.40.50.300 1038 1185 3.9E-88 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1903 9ab214a97e06f1bd0a02a0a2a08a44cc 1200 PANTHER PTHR18937 958 1195 1.1E-292 T 19-04-2016 AMED_6355 ab118608334fd859939df8493a61f79d 514 Gene3D G3DSA:3.40.50.1820 203 305 2.0E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6355 ab118608334fd859939df8493a61f79d 514 Gene3D G3DSA:3.40.50.1820 38 149 6.8E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6355 ab118608334fd859939df8493a61f79d 514 SUPERFAMILY SSF49785 266 400 1.3E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6355 ab118608334fd859939df8493a61f79d 514 SUPERFAMILY SSF49785 431 498 1.3E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6355 ab118608334fd859939df8493a61f79d 514 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 277 499 3.2E-30 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6355 ab118608334fd859939df8493a61f79d 514 SUPERFAMILY SSF53474 28 300 5.49E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6355 ab118608334fd859939df8493a61f79d 514 SMART SM00939 265 506 5.0E-34 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6355 ab118608334fd859939df8493a61f79d 514 PANTHER PTHR11731:SF148 38 285 5.2E-24 T 19-04-2016 AMED_6355 ab118608334fd859939df8493a61f79d 514 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 167 250 6.6E-8 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_6355 ab118608334fd859939df8493a61f79d 514 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 53 148 1.6E-14 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_6355 ab118608334fd859939df8493a61f79d 514 PANTHER PTHR11731 38 285 5.2E-24 T 19-04-2016 AMED_6355 ab118608334fd859939df8493a61f79d 514 Gene3D G3DSA:2.60.120.260 431 497 4.3E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6355 ab118608334fd859939df8493a61f79d 514 Gene3D G3DSA:2.60.120.260 306 395 4.3E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 Gene3D G3DSA:2.40.40.20 129 324 3.1E-45 T 19-04-2016 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 PANTHER PTHR11615:SF119 12 341 5.2E-127 T 19-04-2016 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 PANTHER PTHR11615 12 341 5.2E-127 T 19-04-2016 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 Pfam PF00384 Molybdopterin oxidoreductase 13 71 9.7E-16 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 SUPERFAMILY SSF53706 13 145 4.19E-43 T 19-04-2016 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 SUPERFAMILY SSF53706 173 206 4.19E-43 T 19-04-2016 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 Gene3D G3DSA:3.40.50.740 12 128 1.2E-33 T 19-04-2016 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 Pfam PF01568 Molydopterin dinucleotide binding domain 201 317 6.4E-28 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_6558 a2d3a79b3fd77fe8c01e261e7ea2852e 350 SUPERFAMILY SSF50692 175 324 9.04E-38 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 Pfam PF00072 Response regulator receiver domain 4 116 8.5E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 3.8E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 Gene3D G3DSA:3.40.50.2300 1 153 5.7E-40 T 19-04-2016 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 7.8E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 7.8E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 7.8E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 PANTHER PTHR26402:SF151 2 211 3.3E-87 T 19-04-2016 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 SMART SM00448 2 116 9.0E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 Gene3D G3DSA:1.10.10.10 154 214 4.8E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 PANTHER PTHR26402 2 211 3.3E-87 T 19-04-2016 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 SUPERFAMILY SSF52172 1 134 1.42E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 SUPERFAMILY SSF46894 140 215 3.4E-22 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8933 3c426810eb239eea5b7dd60c64fcc13a 221 SMART SM00421 152 209 9.1E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 Pfam PF14759 Reductase C-terminal 319 401 1.8E-15 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PANTHER PTHR22912 3 389 5.0E-122 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 4.6E-21 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 4.6E-21 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 4.6E-21 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 4.6E-21 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 4.6E-21 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 Gene3D G3DSA:3.50.50.60 110 309 1.7E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 Gene3D G3DSA:3.30.390.30 319 401 5.5E-24 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 SUPERFAMILY SSF55424 311 401 3.98E-20 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 Gene3D G3DSA:3.50.50.60 2 109 2.7E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PANTHER PTHR22912:SF180 3 389 5.0E-122 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 299 2.0E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 SUPERFAMILY SSF51905 2 191 4.03E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 1.2E-13 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 1.2E-13 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.2E-13 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 1.2E-13 T 19-04-2016 AMED_4383 12c9cc2fb4531058d33282f21849fd4b 402 SUPERFAMILY SSF51905 146 309 8.64E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 Gene3D G3DSA:1.10.260.40 22 72 1.0E-25 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 Pfam PF13377 Periplasmic binding protein-like domain 187 344 1.2E-36 T 19-04-2016 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 Gene3D G3DSA:3.40.50.2300 194 326 2.0E-49 T 19-04-2016 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 23 67 2.9E-18 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 ProSitePatterns PS00356 LacI-type HTH domain signature. 23 41 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 SUPERFAMILY SSF47413 20 78 1.69E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 PANTHER PTHR30146 19 347 6.0E-113 T 19-04-2016 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 SUPERFAMILY SSF53822 77 338 1.99E-58 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 SMART SM00354 20 90 5.7E-27 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 Gene3D G3DSA:3.40.50.2300 73 193 4.3E-28 T 19-04-2016 AMED_4387 890fc944c3a89f4201ba43a36ec1e1e5 347 PANTHER PTHR30146:SF34 19 347 6.0E-113 T 19-04-2016 AMED_5923 2b9057fc6aca180cab158dc0cd18661c 291 Gene3D G3DSA:1.10.260.40 12 72 5.6E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5923 2b9057fc6aca180cab158dc0cd18661c 291 SUPERFAMILY SSF47413 11 72 2.79E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5923 2b9057fc6aca180cab158dc0cd18661c 291 Pfam PF13560 Helix-turn-helix domain 14 73 4.1E-10 T 19-04-2016 AMED_5923 2b9057fc6aca180cab158dc0cd18661c 291 PANTHER PTHR10245:SF7 11 291 2.1E-36 T 19-04-2016 AMED_5923 2b9057fc6aca180cab158dc0cd18661c 291 SMART SM00530 17 72 5.8E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5923 2b9057fc6aca180cab158dc0cd18661c 291 PANTHER PTHR10245 11 291 2.1E-36 T 19-04-2016 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 PANTHER PTHR10196:SF69 3 506 7.0E-252 T 19-04-2016 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 Hamap MF_00186 Glycerol kinase [glpK]. 3 498 52.742 T 19-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 451 1.7E-60 T 19-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 PANTHER PTHR10196 3 506 7.0E-252 T 19-04-2016 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 5 497 1.7E-210 T 19-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 252 3.8E-74 T 19-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 SUPERFAMILY SSF53067 5 255 1.73E-89 T 19-04-2016 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 SUPERFAMILY SSF53067 255 498 7.77E-74 T 19-04-2016 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 Gene3D G3DSA:3.30.420.40 255 498 1.3E-90 T 19-04-2016 AMED_4411 bbe34de6d35e9c3bfb894787d30f644b 649 Gene3D G3DSA:3.30.420.40 3 253 1.1E-103 T 19-04-2016 AMED_3601 176d38e7adbe588173a3160af65f4df1 331 Gene3D G3DSA:3.40.50.1820 55 316 3.3E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3601 176d38e7adbe588173a3160af65f4df1 331 PANTHER PTHR10992 59 320 1.7E-14 T 19-04-2016 AMED_3601 176d38e7adbe588173a3160af65f4df1 331 SUPERFAMILY SSF53474 55 317 5.01E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3601 176d38e7adbe588173a3160af65f4df1 331 PANTHER PTHR10992:SF796 59 320 1.7E-14 T 19-04-2016 AMED_6018 7320380650551144b5b2cdffe6eb1fe2 235 PANTHER PTHR28047 1 230 1.5E-57 T 19-04-2016 AMED_6018 7320380650551144b5b2cdffe6eb1fe2 235 Pfam PF01177 Asp/Glu/Hydantoin racemase 65 205 1.2E-6 T 19-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6018 7320380650551144b5b2cdffe6eb1fe2 235 PANTHER PTHR28047:SF1 1 230 1.5E-57 T 19-04-2016 AMED_8411 a0261484871dee1f5b9594ce80d7e2ce 133 SUPERFAMILY SSF54637 5 131 5.41E-32 T 19-04-2016 IPR029069 HotDog domain AMED_8411 a0261484871dee1f5b9594ce80d7e2ce 133 Gene3D G3DSA:3.10.129.10 12 133 2.6E-36 T 19-04-2016 IPR029069 HotDog domain AMED_8411 a0261484871dee1f5b9594ce80d7e2ce 133 Pfam PF03061 Thioesterase superfamily 46 124 3.7E-18 T 19-04-2016 IPR006683 Thioesterase domain AMED_8411 a0261484871dee1f5b9594ce80d7e2ce 133 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 16 131 1.7E-23 T 19-04-2016 IPR003736 Phenylacetic acid degradation-related domain AMED_8411 a0261484871dee1f5b9594ce80d7e2ce 133 PANTHER PTHR12418:SF32 14 133 1.6E-31 T 19-04-2016 AMED_8411 a0261484871dee1f5b9594ce80d7e2ce 133 PANTHER PTHR12418 14 133 1.6E-31 T 19-04-2016 AMED_7120 4e954093cdc311445fef32133e057e08 382 PANTHER PTHR10909 1 381 5.1E-151 T 19-04-2016 AMED_7120 4e954093cdc311445fef32133e057e08 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 Gene3D G3DSA:2.40.110.10 121 219 7.0E-35 T 19-04-2016 AMED_7120 4e954093cdc311445fef32133e057e08 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 379 1.5E-51 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 Gene3D G3DSA:1.20.140.10 220 381 1.5E-70 T 19-04-2016 AMED_7120 4e954093cdc311445fef32133e057e08 382 SUPERFAMILY SSF47203 228 381 2.39E-57 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 Gene3D G3DSA:1.10.540.10 1 118 8.6E-40 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 1.1E-32 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 218 2.9E-22 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7120 4e954093cdc311445fef32133e057e08 382 PANTHER PTHR10909:SF305 1 381 5.1E-151 T 19-04-2016 AMED_7120 4e954093cdc311445fef32133e057e08 382 SUPERFAMILY SSF56645 1 242 3.01E-76 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 Gene3D G3DSA:3.40.190.10 180 269 3.0E-28 T 19-04-2016 AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 PANTHER PTHR30346:SF2 1 300 7.6E-85 T 19-04-2016 AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 Gene3D G3DSA:3.40.190.10 89 179 2.7E-19 T 19-04-2016 AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 Gene3D G3DSA:1.10.10.10 1 88 3.0E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.4E-19 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 Pfam PF03466 LysR substrate binding domain 88 295 1.4E-42 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 SUPERFAMILY SSF53850 89 298 6.98E-41 T 19-04-2016 AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 SUPERFAMILY SSF46785 1 112 4.31E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0790 a77eb94c29f6d56862a352062cd8eb93 300 PANTHER PTHR30346 1 300 7.6E-85 T 19-04-2016 AMED_4448 299e2c4b6646649faad9f6a70662415c 208 Pfam PF13633 Prokaryotic N-terminal methylation site 8 33 4.7E-9 T 19-04-2016 IPR012902 Prokaryotic N-terminal methylation site AMED_4448 299e2c4b6646649faad9f6a70662415c 208 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 27 8.6E-8 T 19-04-2016 IPR012902 Prokaryotic N-terminal methylation site AMED_4448 299e2c4b6646649faad9f6a70662415c 208 SUPERFAMILY SSF54523 10 124 7.85E-8 T 19-04-2016 AMED_8357 481f02cbc6d4c4e398bd09b8a859864a 430 Pfam PF01565 FAD binding domain 26 157 8.6E-32 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_8357 481f02cbc6d4c4e398bd09b8a859864a 430 SUPERFAMILY SSF56176 5 187 1.21E-48 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_8357 481f02cbc6d4c4e398bd09b8a859864a 430 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 26 59 - T 19-04-2016 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMED_8357 481f02cbc6d4c4e398bd09b8a859864a 430 Gene3D G3DSA:3.30.465.10 80 187 1.6E-17 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_8357 481f02cbc6d4c4e398bd09b8a859864a 430 PANTHER PTHR11748 2 287 3.7E-58 T 19-04-2016 AMED_8357 481f02cbc6d4c4e398bd09b8a859864a 430 Gene3D G3DSA:3.30.43.10 19 79 3.1E-10 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 Pfam PF12836 Helix-hairpin-helix motif 173 234 9.2E-23 T 19-04-2016 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 Gene3D G3DSA:1.10.150.320 166 235 6.1E-21 T 19-04-2016 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 172 235 1.9E-17 T 19-04-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 SMART SM00278 213 232 3.4 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 SMART SM00278 183 202 2.8 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 SUPERFAMILY SSF47781 162 236 9.45E-29 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 Gene3D G3DSA:3.10.560.10 97 154 1.9E-6 T 19-04-2016 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 PANTHER PTHR21180 103 236 1.6E-36 T 19-04-2016 AMED_6690 7ec50048e930139e12c9fc86bc7549d4 236 Pfam PF10531 SLBB domain 103 153 2.0E-10 T 19-04-2016 IPR019554 Soluble ligand binding domain AMED_8239 2261a56bc05125d765da42225fd03440 199 PANTHER PTHR33284 6 199 3.4E-46 T 19-04-2016 AMED_8239 2261a56bc05125d765da42225fd03440 199 Pfam PF01386 Ribosomal L25p family 6 92 1.1E-24 T 19-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMED_8239 2261a56bc05125d765da42225fd03440 199 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 180 25.545 T 19-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMED_8239 2261a56bc05125d765da42225fd03440 199 Gene3D G3DSA:2.40.240.10 4 94 7.1E-29 T 19-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 AMED_8239 2261a56bc05125d765da42225fd03440 199 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 180 5.4E-20 T 19-04-2016 IPR020057 Ribosomal protein L25, beta domain AMED_8239 2261a56bc05125d765da42225fd03440 199 Gene3D G3DSA:2.170.120.20 97 186 6.1E-22 T 19-04-2016 IPR020057 Ribosomal protein L25, beta domain AMED_8239 2261a56bc05125d765da42225fd03440 199 SUPERFAMILY SSF50715 10 179 1.1E-48 T 19-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 AMED_8239 2261a56bc05125d765da42225fd03440 199 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 176 4.9E-50 T 19-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMED_8239 2261a56bc05125d765da42225fd03440 199 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 11 91 2.0E-19 T 19-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Gene3D G3DSA:3.40.50.300 308 368 1.9E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Gene3D G3DSA:3.40.50.300 37 120 1.9E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Gene3D G3DSA:3.40.50.300 418 439 1.9E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 SMART SM00490 490 576 2.6E-18 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 SMART SM00487 40 455 1.6E-26 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 SUPERFAMILY SSF46600 670 718 1.57E-11 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Gene3D G3DSA:3.30.2060.10 191 259 1.9E-10 T 19-04-2016 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Gene3D G3DSA:4.10.860.10 670 719 2.1E-15 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 35 714 0.0 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Hamap MF_00204 UvrABC system protein B [uvrB]. 34 716 42.877 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Pfam PF12344 Ultra-violet resistance protein B 582 623 1.0E-20 T 19-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Pfam PF04851 Type III restriction enzyme, res subunit 47 168 4.9E-9 T 19-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 SUPERFAMILY SSF52540 36 445 8.22E-132 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Pfam PF02151 UvrB/uvrC motif 683 716 4.3E-8 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Gene3D G3DSA:3.40.50.300 449 613 3.1E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 Pfam PF00271 Helicase conserved C-terminal domain 463 575 1.6E-19 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 PANTHER PTHR24029 675 721 0.0 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 PANTHER PTHR24029 30 654 0.0 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 SUPERFAMILY SSF52540 63 111 4.6E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6117 2f110c3315d7ad73099fbb84aba4714d 726 SUPERFAMILY SSF52540 500 623 4.6E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 Pfam PF00923 Transaldolase 16 360 6.9E-84 T 19-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 SUPERFAMILY SSF51569 8 364 1.47E-75 T 19-04-2016 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 PANTHER PTHR10683 2 366 2.1E-197 T 19-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 Hamap MF_00493 Transaldolase [tal]. 1 370 157.906 T 19-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 TIGRFAM TIGR00876 tal_mycobact: transaldolase 12 359 8.2E-140 T 19-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 PANTHER PTHR10683:SF12 2 366 2.1E-197 T 19-04-2016 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 PIRSF PIRSF036915 1 370 4.9E-171 T 19-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 ProSitePatterns PS01054 Transaldolase signature 1. 42 50 - T 19-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMED_2808 f1a9749f249ba8fefd90b943940a49c0 370 Gene3D G3DSA:3.20.20.70 4 361 1.7E-122 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8377 a8eebe796e84e8eec184a64288278897 403 SMART SM00458 279 403 7.2E-32 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8377 a8eebe796e84e8eec184a64288278897 403 SUPERFAMILY SSF50370 277 402 9.18E-41 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8377 a8eebe796e84e8eec184a64288278897 403 Gene3D G3DSA:2.60.120.200 32 270 1.3E-73 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_8377 a8eebe796e84e8eec184a64288278897 403 PANTHER PTHR10963 37 274 2.2E-59 T 19-04-2016 AMED_8377 a8eebe796e84e8eec184a64288278897 403 Gene3D G3DSA:2.80.10.50 281 402 2.7E-42 T 19-04-2016 AMED_8377 a8eebe796e84e8eec184a64288278897 403 Pfam PF00652 Ricin-type beta-trefoil lectin domain 279 400 1.6E-29 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8377 a8eebe796e84e8eec184a64288278897 403 Pfam PF00722 Glycosyl hydrolases family 16 67 266 3.6E-44 T 19-04-2016 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 AMED_8377 a8eebe796e84e8eec184a64288278897 403 PRINTS PR00737 Glycosyl hydrolase family 16 signature 111 129 2.6E-5 T 19-04-2016 IPR008264 Beta-glucanase GO:0004553|GO:0005975 AMED_8377 a8eebe796e84e8eec184a64288278897 403 PRINTS PR00737 Glycosyl hydrolase family 16 signature 207 224 2.6E-5 T 19-04-2016 IPR008264 Beta-glucanase GO:0004553|GO:0005975 AMED_8377 a8eebe796e84e8eec184a64288278897 403 PRINTS PR00737 Glycosyl hydrolase family 16 signature 187 204 2.6E-5 T 19-04-2016 IPR008264 Beta-glucanase GO:0004553|GO:0005975 AMED_8377 a8eebe796e84e8eec184a64288278897 403 SUPERFAMILY SSF49899 30 270 6.73E-69 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 Gene3D G3DSA:1.20.5.1030 87 145 1.5E-22 T 19-04-2016 AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 PANTHER PTHR33910:SF1 83 146 3.0E-14 T 19-04-2016 AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 93 121 - T 19-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 Hamap MF_00422 Protein translocase subunit SecE [secE]. 88 145 12.56 T 19-04-2016 IPR022943 Preprotein translocase subunit SecE AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 92 143 8.1E-19 T 19-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 91 146 1.7E-19 T 19-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AMED_0593 9e8ad528da8b905e4aa5fdaca0521aa1 146 PANTHER PTHR33910 83 146 3.0E-14 T 19-04-2016 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 359 41.725 T 19-04-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 PANTHER PTHR13794:SF8 1 361 2.5E-120 T 19-04-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 10 331 2.7E-92 T 19-04-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 6 121 4.1E-11 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 Pfam PF13378 Enolase C-terminal domain-like 152 352 1.1E-45 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 SMART SM00922 142 235 1.2E-20 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 Gene3D G3DSA:3.20.20.120 125 350 8.1E-65 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 PANTHER PTHR13794 1 361 2.5E-120 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 Gene3D G3DSA:3.30.390.10 2 124 1.3E-40 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 SUPERFAMILY SSF54826 2 124 9.43E-29 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3459 6a61acfb25deebe21d56ab3cb64aeee1 367 SUPERFAMILY SSF51604 123 359 4.85E-64 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 SMART SM00448 2 115 2.8E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 Pfam PF00072 Response regulator receiver domain 4 116 1.1E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 198 1.8E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 Gene3D G3DSA:1.10.10.10 121 205 3.1E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 SMART SM00421 142 199 4.2E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 PANTHER PTHR26402:SF151 2 200 1.2E-80 T 19-04-2016 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 SUPERFAMILY SSF46894 138 205 7.82E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 SUPERFAMILY SSF52172 2 133 8.68E-36 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 Gene3D G3DSA:3.40.50.2300 2 120 4.9E-40 T 19-04-2016 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 PANTHER PTHR26402 2 200 1.2E-80 T 19-04-2016 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 2.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 2.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8457 f6b061c24dd618f91b7343a9c0b5fd93 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 2.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0240 082fb57e946ffbca5bd709c95432d1cd 303 PANTHER PTHR30413 20 147 4.2E-43 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_0240 082fb57e946ffbca5bd709c95432d1cd 303 PANTHER PTHR30413:SF9 170 299 4.2E-43 T 19-04-2016 AMED_0240 082fb57e946ffbca5bd709c95432d1cd 303 Pfam PF01061 ABC-2 type transporter 30 264 5.9E-23 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_0240 082fb57e946ffbca5bd709c95432d1cd 303 PANTHER PTHR30413:SF9 20 147 4.2E-43 T 19-04-2016 AMED_0240 082fb57e946ffbca5bd709c95432d1cd 303 PANTHER PTHR30413 170 299 4.2E-43 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_8893 c020520524e1072ededb0a3f7ee13d65 297 SUPERFAMILY SSF103481 184 286 9.42E-12 T 19-04-2016 AMED_8893 c020520524e1072ededb0a3f7ee13d65 297 PANTHER PTHR32322 3 297 6.7E-69 T 19-04-2016 AMED_8893 c020520524e1072ededb0a3f7ee13d65 297 Pfam PF00892 EamA-like transporter family 7 130 4.6E-12 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_8893 c020520524e1072ededb0a3f7ee13d65 297 Pfam PF00892 EamA-like transporter family 142 282 1.3E-16 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_8893 c020520524e1072ededb0a3f7ee13d65 297 PANTHER PTHR32322:SF9 3 297 6.7E-69 T 19-04-2016 AMED_8893 c020520524e1072ededb0a3f7ee13d65 297 SUPERFAMILY SSF103481 42 135 5.36E-14 T 19-04-2016 AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 SUPERFAMILY SSF52518 357 543 2.44E-56 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 Gene3D G3DSA:3.40.50.970 3 176 3.1E-51 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 Gene3D G3DSA:3.40.50.1220 184 335 4.6E-39 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 SUPERFAMILY SSF52467 182 338 2.31E-40 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 167 2.5E-42 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 PANTHER PTHR18968:SF12 3 572 4.5E-280 T 19-04-2016 AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 Gene3D G3DSA:3.40.50.970 355 549 3.1E-54 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 526 3.7E-35 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 SUPERFAMILY SSF52518 2 179 2.94E-43 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 190 317 1.4E-28 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 PANTHER PTHR18968 3 572 4.5E-280 T 19-04-2016 AMED_4530 12bfe2d34c7afab94ecb74c81a634577 577 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 SUPERFAMILY SSF55486 266 463 7.69E-38 T 19-04-2016 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 Pfam PF01433 Peptidase family M1 318 361 1.4E-13 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 Pfam PF01433 Peptidase family M1 68 258 1.2E-14 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 PANTHER PTHR11533 44 464 1.1E-61 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 PANTHER PTHR11533:SF185 44 464 1.1E-61 T 19-04-2016 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 337 349 2.9E-5 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 2.9E-5 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 318 333 2.9E-5 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 Gene3D G3DSA:1.10.390.10 332 463 6.8E-14 T 19-04-2016 AMED_8705 03934eb19d0ead50cd89c6c3098595c6 475 SUPERFAMILY SSF63737 51 237 1.57E-28 T 19-04-2016 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 Gene3D G3DSA:3.40.50.300 6 247 5.0E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 SMART SM00382 309 478 1.0E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 SMART SM00382 29 205 4.4E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF12848 ABC transporter 192 266 2.2E-7 T 19-04-2016 IPR032781 ABC-transporter extension domain AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 Gene3D G3DSA:3.40.50.300 282 501 3.7E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF16326 ABC transporter C-terminal domain 524 585 2.4E-8 T 19-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 SUPERFAMILY SSF52540 5 202 1.63E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF00005 ABC transporter 20 153 6.7E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 Pfam PF00005 ABC transporter 300 434 3.8E-21 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 PANTHER PTHR19211:SF55 1 530 5.0E-242 T 19-04-2016 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 PANTHER PTHR19211 1 530 5.0E-242 T 19-04-2016 AMED_8244 6acc872e08318fc15f7a9115c61c72f9 588 SUPERFAMILY SSF52540 273 484 4.36E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 Pfam PF04542 Sigma-70 region 2 18 78 3.2E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.10.10.10 101 162 7.8E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.10.1740.10 5 99 9.1E-8 T 19-04-2016 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.25.40.10 309 396 1.2E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 Gene3D G3DSA:1.25.40.10 211 242 1.2E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 SUPERFAMILY SSF88946 5 83 1.29E-9 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 SUPERFAMILY SSF88659 102 162 2.99E-9 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 PANTHER PTHR30173 1 378 5.4E-144 T 19-04-2016 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 Pfam PF08281 Sigma-70, region 4 109 160 1.4E-8 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 SUPERFAMILY SSF48452 308 398 1.54E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7004 a1007aa99b9467687eac73c80f7a06ef 407 PANTHER PTHR30173:SF7 1 378 5.4E-144 T 19-04-2016 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 391 567 3.2E-88 T 19-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 Hamap MF_01403 Probable phosphoketolase. 8 781 39.354 T 19-04-2016 IPR023962 Probable phosphoketolase AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 SUPERFAMILY SSF52922 594 732 1.57E-7 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 Gene3D G3DSA:3.40.50.970 48 355 1.3E-17 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 Pfam PF09364 XFP N-terminal domain 13 376 4.5E-169 T 19-04-2016 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 PANTHER PTHR31273:SF0 13 781 0.0 T 19-04-2016 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 PIRSF PIRSF017245 6 781 0.0 T 19-04-2016 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 Pfam PF09363 XFP C-terminal domain 578 779 7.7E-89 T 19-04-2016 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 SUPERFAMILY SSF52518 369 584 1.59E-21 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 SUPERFAMILY SSF52518 14 360 6.13E-71 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 ProSitePatterns PS60003 Phosphoketolase signature 2. 160 178 - T 19-04-2016 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 AMED_5477 a2343daec5d290f1a6894620c8fdf3d4 781 PANTHER PTHR31273 13 781 0.0 T 19-04-2016 AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 SUPERFAMILY SSF50447 3 90 2.47E-18 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 PANTHER PTHR33692 3 170 1.3E-47 T 19-04-2016 AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 2 167 23.325 T 19-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 SUPERFAMILY SSF50346 98 167 8.37E-16 T 19-04-2016 IPR011033 PRC-barrel-like AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 Pfam PF01782 RimM N-terminal domain 4 85 3.1E-21 T 19-04-2016 IPR002676 RimM protein GO:0006364 AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 3 167 3.5E-40 T 19-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 Gene3D G3DSA:2.40.30.60 3 91 1.1E-21 T 19-04-2016 IPR002676 RimM protein GO:0006364 AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 Pfam PF05239 PRC-barrel domain 95 168 1.7E-10 T 19-04-2016 IPR027275 PRC-barrel domain AMED_1960 ec921d13a70137ac0981ffbdbf6d9010 170 Gene3D G3DSA:2.30.30.240 98 167 3.8E-16 T 19-04-2016 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF52210 543 689 6.41E-28 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 400 535 2.9E-49 T 19-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.40.50.720 252 379 1.1E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4573 28523e501e21dc953ade07b19ffc1427 708 PANTHER PTHR33303:SF3 3 128 4.2E-175 T 19-04-2016 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.40.50.261 540 686 5.1E-11 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 PANTHER PTHR33303:SF3 242 686 4.2E-175 T 19-04-2016 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Pfam PF13549 ATP-grasp domain 13 232 2.4E-76 T 19-04-2016 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 PANTHER PTHR33303 3 128 4.2E-175 T 19-04-2016 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Pfam PF13380 CoA binding domain 261 380 8.1E-25 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF52210 381 534 9.68E-38 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.30.1490.20 33 66 8.2E-5 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 PANTHER PTHR33303 242 686 4.2E-175 T 19-04-2016 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 SMART SM00881 256 351 1.6E-30 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 Gene3D G3DSA:3.40.50.261 380 534 1.6E-28 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4573 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF51735 253 386 4.64E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4573 28523e501e21dc953ade07b19ffc1427 708 SUPERFAMILY SSF56059 28 239 5.41E-39 T 19-04-2016 AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 SUPERFAMILY SSF51735 3 245 6.88E-73 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.7E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.7E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 5.7E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 5.7E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.7E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.7E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 Gene3D G3DSA:3.40.50.720 2 245 6.4E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 9.1E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 9.1E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 9.1E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 245 7.3E-57 T 19-04-2016 AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PANTHER PTHR24322 155 186 1.7E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9133 82197155684dd9f0ecc6d3b2b1429a72 246 PANTHER PTHR24322 5 138 1.7E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8604 8aa20a324ad6a3318864c56a62d7ec1c 145 Pfam PF06305 Protein of unknown function (DUF1049) 94 144 1.8E-10 T 19-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AMED_4130 9e7f187236a6bf8ade51676421f18adf 196 Pfam PF01339 CheB methylesterase 12 188 1.7E-48 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_4130 9e7f187236a6bf8ade51676421f18adf 196 PANTHER PTHR24421 11 189 1.3E-39 T 19-04-2016 AMED_4130 9e7f187236a6bf8ade51676421f18adf 196 SUPERFAMILY SSF52738 8 194 4.45E-52 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_4130 9e7f187236a6bf8ade51676421f18adf 196 PANTHER PTHR24421:SF16 11 189 1.3E-39 T 19-04-2016 AMED_4130 9e7f187236a6bf8ade51676421f18adf 196 Gene3D G3DSA:3.40.50.180 8 194 1.4E-58 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF47336 1369 1441 2.49E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.30.300.30 1314 1376 2.6E-31 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.30.300.30 885 941 2.6E-31 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SMART SM01294 1376 1440 0.0065 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SMART SM00823 Phosphopantetheine attachment site 1375 1444 6.1E-6 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF00501 AMP-binding enzyme 491 889 5.2E-84 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 ProSitePatterns PS00455 Putative AMP-binding domain signature. 631 642 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1399 1414 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF53335 1095 1288 9.28E-28 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.40.50.150 1110 1285 1.3E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 510 913 1.6E-121 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:1.10.1200.10 1377 1442 7.1E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 PANTHER PTHR24095:SF137 1302 1441 4.5E-213 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 PANTHER PTHR24095:SF137 18 928 4.5E-213 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF52777 13 186 1.09E-25 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF52777 197 453 1.11E-35 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF56801 473 943 4.84E-133 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 SUPERFAMILY SSF56801 1309 1388 4.84E-133 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF00550 Phosphopantetheine attachment site 1376 1434 1.4E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.40.50.980 638 800 8.7E-44 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:2.30.38.10 801 879 1.5E-22 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 PANTHER PTHR24095 1302 1441 4.5E-213 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 PANTHER PTHR24095 18 928 4.5E-213 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF08415 Nonribosomal peptide synthase 346 403 1.5E-11 T 19-04-2016 IPR013624 Non-ribosomal peptide synthetase AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF08242 Methyltransferase domain 1130 1229 1.7E-18 T 19-04-2016 IPR013217 Methyltransferase type 12 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Gene3D G3DSA:3.40.50.980 485 637 1.8E-34 T 19-04-2016 AMED_8294 1bb52ad1dd53cf490aadc84ac0bc90f1 1458 Pfam PF00668 Condensation domain 17 323 5.4E-39 T 19-04-2016 IPR001242 Condensation domain AMED_2018 985a5d361cb3225149fe089dcc0defbb 116 Pfam PF03795 YCII-related domain 21 110 7.2E-16 T 19-04-2016 IPR005545 YCII-related AMED_2018 985a5d361cb3225149fe089dcc0defbb 116 SUPERFAMILY SSF54909 24 111 4.56E-22 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2018 985a5d361cb3225149fe089dcc0defbb 116 Gene3D G3DSA:3.30.70.1060 2 112 6.6E-29 T 19-04-2016 AMED_2018 985a5d361cb3225149fe089dcc0defbb 116 PANTHER PTHR35174 2 115 1.1E-22 T 19-04-2016 AMED_6065 c09cf2ea15547bddb5f4b29581ccf9a7 462 Pfam PF02447 GntP family permease 13 459 6.1E-130 T 19-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMED_6065 c09cf2ea15547bddb5f4b29581ccf9a7 462 PANTHER PTHR30354:SF2 7 462 9.8E-190 T 19-04-2016 AMED_6065 c09cf2ea15547bddb5f4b29581ccf9a7 462 PANTHER PTHR30354 7 462 9.8E-190 T 19-04-2016 AMED_6065 c09cf2ea15547bddb5f4b29581ccf9a7 462 PIRSF PIRSF002746 7 462 2.1E-149 T 19-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMED_6065 c09cf2ea15547bddb5f4b29581ccf9a7 462 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 14 461 8.9E-116 T 19-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 59 577 9.5E-141 T 19-04-2016 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 SUPERFAMILY SSF50370 636 772 1.43E-34 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 PANTHER PTHR31151 54 583 1.1E-196 T 19-04-2016 AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 PANTHER PTHR31151:SF0 54 583 1.1E-196 T 19-04-2016 AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 SUPERFAMILY SSF48208 181 401 6.8E-15 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 SUPERFAMILY SSF48208 112 151 6.8E-15 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 629 712 2.0E-15 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3987 f97185d52c789ba569dbcdc71ae855df 775 Gene3D G3DSA:2.80.10.50 638 772 1.3E-25 T 19-04-2016 AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 322 394 3.2E-10 T 19-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 SUPERFAMILY SSF50249 8 67 6.28E-12 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 PANTHER PTHR11061:SF30 6 395 2.0E-75 T 19-04-2016 AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 SUPERFAMILY SSF53335 69 394 4.14E-49 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 PANTHER PTHR11061 6 395 2.0E-75 T 19-04-2016 AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Gene3D G3DSA:3.40.50.150 218 395 5.1E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Pfam PF01938 TRAM domain 6 57 1.9E-10 T 19-04-2016 IPR002792 TRAM domain AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 Gene3D G3DSA:2.40.50.140 6 77 2.1E-25 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2615 0b5cc401b90d79bd0fcd6ec1a5ec9ddf 395 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 379 389 - T 19-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 PRINTS PR00885 Bacterial general secretion pathway protein H signature 25 39 2.0E-5 T 19-04-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 PRINTS PR00885 Bacterial general secretion pathway protein H signature 10 24 2.0E-5 T 19-04-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 PANTHER PTHR30093 1 74 2.8E-15 T 19-04-2016 AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 34 6.4E-9 T 19-04-2016 IPR012902 Prokaryotic N-terminal methylation site AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 10 34 4.2E-9 T 19-04-2016 IPR012902 Prokaryotic N-terminal methylation site AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 Gene3D G3DSA:3.30.700.10 15 98 1.1E-7 T 19-04-2016 AMED_4453 579f8fc81e46993bba24a4e2723a1805 112 SUPERFAMILY SSF54523 15 102 1.02E-15 T 19-04-2016 AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 PANTHER PTHR12145 225 879 9.8E-241 T 19-04-2016 AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 Gene3D G3DSA:1.50.10.10 421 736 6.3E-20 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 Pfam PF03190 Protein of unknown function, DUF255 226 386 1.1E-72 T 19-04-2016 IPR004879 Domain of unknown function DUF255 AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 PANTHER PTHR12145:SF11 225 879 9.8E-241 T 19-04-2016 AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 Gene3D G3DSA:3.40.30.10 243 370 1.1E-31 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 SUPERFAMILY SSF48208 412 743 1.19E-71 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_8085 74910c3c1ba4063813ace897ba502eb1 879 SUPERFAMILY SSF52833 226 350 5.31E-29 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 45 221 1.11E-41 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 2594 2762 2.78E-37 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.50.980 3196 3359 2.7E-29 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.50.980 655 818 7.8E-30 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.50.980 2146 2309 1.2E-30 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 PANTHER PTHR24095:SF173 680 1166 0.0 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 PANTHER PTHR24095:SF173 1507 3531 0.0 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.50.980 1990 2145 2.8E-46 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.50.980 3040 3195 5.9E-47 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.50.980 500 654 1.4E-46 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 4388 4644 1.22E-35 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF56801 1956 2522 2.75E-148 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00144 Beta-lactamase 4667 4980 1.1E-46 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF56601 4667 4977 1.49E-56 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF47336 3552 3622 3.27E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF13193 AMP-binding enzyme C-terminal domain 2407 2482 2.8E-12 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF13193 AMP-binding enzyme C-terminal domain 3456 3531 2.0E-11 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF13193 AMP-binding enzyme C-terminal domain 915 986 1.2E-9 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00501 AMP-binding enzyme 505 907 4.5E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00501 AMP-binding enzyme 3046 3448 3.3E-86 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00501 AMP-binding enzyme 1998 2399 7.1E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 3665 3842 3.89E-42 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00668 Condensation domain 42 339 5.1E-71 T 19-04-2016 IPR001242 Condensation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00668 Condensation domain 1540 1835 2.3E-56 T 19-04-2016 IPR001242 Condensation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00668 Condensation domain 4224 4501 4.9E-42 T 19-04-2016 IPR001242 Condensation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00668 Condensation domain 3660 3956 1.2E-49 T 19-04-2016 IPR001242 Condensation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00668 Condensation domain 1094 1382 2.1E-39 T 19-04-2016 IPR001242 Condensation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00668 Condensation domain 2590 2880 2.0E-64 T 19-04-2016 IPR001242 Condensation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF13745 HxxPF-repeated domain 363 450 6.8E-21 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF13745 HxxPF-repeated domain 2903 2993 2.3E-23 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.40.710.10 4667 4988 4.2E-59 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:2.30.38.10 2310 2389 5.5E-27 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:2.30.38.10 819 897 1.2E-27 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:2.30.38.10 3360 3438 7.8E-28 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 1282 1499 2.22E-33 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 1090 1267 1.89E-32 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 ProSitePatterns PS00455 Putative AMP-binding domain signature. 649 660 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2140 2151 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3190 3201 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SMART SM00823 Phosphopantetheine attachment site 2509 2577 5.8E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SMART SM00823 Phosphopantetheine attachment site 1014 1082 6.0E-7 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SMART SM00823 Phosphopantetheine attachment site 4120 4191 5.6E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SMART SM00823 Phosphopantetheine attachment site 3558 3626 4.4E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3068 3472 4.8E-129 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2018 2423 5.1E-129 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 527 931 4.3E-132 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF47336 4113 4185 5.63E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF47336 2501 2572 8.51E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 4207 4377 4.22E-31 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF56801 3005 3571 7.59E-148 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3582 3597 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1038 1053 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2533 2548 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 1544 1721 2.78E-41 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 2770 3034 1.45E-55 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 PANTHER PTHR24095 680 1166 0.0 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 PANTHER PTHR24095 1507 3531 0.0 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF56801 466 1027 1.11E-144 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.30.300.30 3443 3563 1.9E-40 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.30.300.30 902 1017 3.1E-38 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:3.30.300.30 2394 2512 6.4E-40 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1402 1522 2.9E-25 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 3845 4079 1.89E-48 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF47336 1008 1079 1.18E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 229 493 4.45E-56 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 SUPERFAMILY SSF52777 1722 1960 1.85E-54 T 19-04-2016 AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00550 Phosphopantetheine attachment site 3560 3620 7.9E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00550 Phosphopantetheine attachment site 1017 1078 9.7E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00550 Phosphopantetheine attachment site 4122 4185 5.2E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Pfam PF00550 Phosphopantetheine attachment site 2511 2572 1.8E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:1.10.1200.10 2513 2573 2.8E-24 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:1.10.1200.10 4110 4192 1.9E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:1.10.1200.10 1018 1080 1.9E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4767 062e7cf5b1a10714b5086ad1929fea09 4998 Gene3D G3DSA:1.10.1200.10 3564 3624 1.4E-24 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_2573 8af25532bc9a9b0f098829340a84fe4e 286 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 33 57 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_2573 8af25532bc9a9b0f098829340a84fe4e 286 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 241 254 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_2573 8af25532bc9a9b0f098829340a84fe4e 286 Pfam PF00294 pfkB family carbohydrate kinase 1 284 1.2E-54 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_2573 8af25532bc9a9b0f098829340a84fe4e 286 Gene3D G3DSA:3.40.1190.20 1 285 5.0E-67 T 19-04-2016 IPR029056 Ribokinase-like AMED_2573 8af25532bc9a9b0f098829340a84fe4e 286 SUPERFAMILY SSF53613 1 285 8.73E-69 T 19-04-2016 IPR029056 Ribokinase-like AMED_2573 8af25532bc9a9b0f098829340a84fe4e 286 PANTHER PTHR10584 1 285 3.4E-64 T 19-04-2016 AMED_2660 b26754a9d4705b683e03fa382a4dc5f0 517 PANTHER PTHR33744:SF3 2 517 6.9E-54 T 19-04-2016 AMED_2660 b26754a9d4705b683e03fa382a4dc5f0 517 Pfam PF13556 PucR C-terminal helix-turn-helix domain 460 517 3.4E-17 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_2660 b26754a9d4705b683e03fa382a4dc5f0 517 PANTHER PTHR33744 2 517 6.9E-54 T 19-04-2016 AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 2.2E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 SUPERFAMILY SSF46689 4 86 4.69E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 Gene3D G3DSA:1.10.357.10 4 197 1.1E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 PANTHER PTHR30055 1 197 7.9E-20 T 19-04-2016 AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 8.8E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7326 f50ddd35c5d485928cf5b4bdc82e2a5f 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 8.8E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2648 a0862873cd5a2b681481aeedaaf85cea 266 PANTHER PTHR42194 1 264 1.3E-78 T 19-04-2016 AMED_2648 a0862873cd5a2b681481aeedaaf85cea 266 SUPERFAMILY SSF51658 15 221 1.35E-11 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_2648 a0862873cd5a2b681481aeedaaf85cea 266 Pfam PF05114 Protein of unknown function (DUF692) 5 263 7.8E-84 T 19-04-2016 IPR007801 Uncharacterised protein family UPF0276 AMED_2648 a0862873cd5a2b681481aeedaaf85cea 266 PANTHER PTHR42194:SF1 1 264 1.3E-78 T 19-04-2016 AMED_2648 a0862873cd5a2b681481aeedaaf85cea 266 Gene3D G3DSA:3.20.20.150 4 264 1.1E-83 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_0005 231431f00fa753fcb49ac0d31d13f976 167 Pfam PF05258 Protein of unknown function (DUF721) 55 142 1.5E-24 T 19-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 AMED_0005 231431f00fa753fcb49ac0d31d13f976 167 PANTHER PTHR36456 40 167 1.5E-25 T 19-04-2016 AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 SUPERFAMILY SSF50370 485 611 3.11E-40 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 Gene3D G3DSA:2.80.10.50 488 611 3.2E-42 T 19-04-2016 AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 Gene3D G3DSA:3.20.20.80 80 358 1.5E-16 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 SUPERFAMILY SSF51445 63 382 1.94E-35 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 SMART SM00458 487 612 3.6E-29 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 PANTHER PTHR11675 488 610 3.1E-25 T 19-04-2016 AMED_7829 7088af0a9e54e9ab7021304cee85a1c4 612 Pfam PF00652 Ricin-type beta-trefoil lectin domain 487 610 2.4E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 278 493 1.6E-51 T 19-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 37 225 2.7E-26 T 19-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 SUPERFAMILY SSF52518 249 515 8.84E-61 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 SUPERFAMILY SSF53323 31 237 2.09E-17 T 19-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 SUPERFAMILY SSF52922 534 634 1.49E-10 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 29 625 4.8E-198 T 19-04-2016 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969|UniPathway: UPA00223 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 PANTHER PTHR32154 270 436 5.2E-241 T 19-04-2016 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 PANTHER PTHR32154 22 246 5.2E-241 T 19-04-2016 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 PANTHER PTHR32154 470 634 5.2E-241 T 19-04-2016 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 Gene3D G3DSA:3.40.50.970 242 441 3.7E-73 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 Gene3D G3DSA:3.40.50.920 533 632 1.1E-5 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 PANTHER PTHR32154:SF14 270 436 5.2E-241 T 19-04-2016 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 PANTHER PTHR32154:SF14 22 246 5.2E-241 T 19-04-2016 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 PANTHER PTHR32154:SF14 470 634 5.2E-241 T 19-04-2016 AMED_0541 f8adc9eb5305ceacfbb50bf039d7fc57 641 Gene3D G3DSA:3.40.920.10 29 229 7.4E-25 T 19-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 Gene3D G3DSA:1.10.10.10 110 165 2.8E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5213 907106c117fcaa75ec281e0b823783ec 263 SUPERFAMILY SSF88659 185 259 8.97E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 38 259 4.1E-89 T 19-04-2016 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 SUPERFAMILY SSF88946 11 111 1.03E-27 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 Gene3D G3DSA:1.10.10.10 201 261 4.7E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5213 907106c117fcaa75ec281e0b823783ec 263 SUPERFAMILY SSF88659 115 189 7.41E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 PANTHER PTHR30385 28 262 9.9E-93 T 19-04-2016 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 39 259 7.4E-34 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 Pfam PF04542 Sigma-70 region 2 42 111 8.6E-17 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 Gene3D G3DSA:1.10.601.10 38 109 7.1E-19 T 19-04-2016 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 212 224 6.6E-8 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 244 255 6.6E-8 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 229 244 6.6E-8 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 PRINTS PR00046 Major sigma-70 factor signature 66 79 6.6E-8 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 Pfam PF04545 Sigma-70, region 4 208 256 8.6E-17 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 Pfam PF04539 Sigma-70 region 3 127 193 4.7E-14 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5213 907106c117fcaa75ec281e0b823783ec 263 PANTHER PTHR30385:SF4 28 262 9.9E-93 T 19-04-2016 AMED_3328 16c5ac5e36dbeb6ccd979b983161447e 280 SUPERFAMILY SSF51197 19 250 1.25E-29 T 19-04-2016 AMED_3328 16c5ac5e36dbeb6ccd979b983161447e 280 Gene3D G3DSA:2.60.120.620 17 223 3.5E-23 T 19-04-2016 AMED_3328 16c5ac5e36dbeb6ccd979b983161447e 280 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 26 219 2.3E-9 T 19-04-2016 IPR008775 Phytanoyl-CoA dioxygenase AMED_2965 d6c7cb268642b38dd123fdebfbfd38e0 541 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 52 162 1.2E-9 T 19-04-2016 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 AMED_2965 d6c7cb268642b38dd123fdebfbfd38e0 541 Gene3D G3DSA:3.40.710.10 250 539 4.4E-51 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2965 d6c7cb268642b38dd123fdebfbfd38e0 541 PANTHER PTHR30627 243 539 5.5E-53 T 19-04-2016 AMED_2965 d6c7cb268642b38dd123fdebfbfd38e0 541 SUPERFAMILY SSF56601 251 539 3.19E-52 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2965 d6c7cb268642b38dd123fdebfbfd38e0 541 Pfam PF00905 Penicillin binding protein transpeptidase domain 270 535 4.7E-34 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_2965 d6c7cb268642b38dd123fdebfbfd38e0 541 PANTHER PTHR30627:SF4 243 539 5.5E-53 T 19-04-2016 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 SUPERFAMILY SSF53756 503 758 3.86E-33 T 19-04-2016 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 PANTHER PTHR12526 516 684 2.2E-28 T 19-04-2016 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 PANTHER PTHR12526 705 803 2.2E-28 T 19-04-2016 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 Pfam PF00534 Glycosyl transferases group 1 576 741 3.7E-13 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 Gene3D G3DSA:3.40.50.2000 576 741 1.3E-9 T 19-04-2016 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 PANTHER PTHR12526:SF374 516 684 2.2E-28 T 19-04-2016 AMED_0120 fd2ed1da0085d06651a7537b2e4fbde3 803 PANTHER PTHR12526:SF374 705 803 2.2E-28 T 19-04-2016 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 Gene3D G3DSA:1.10.10.60 1 64 2.2E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 SUPERFAMILY SSF48498 79 194 6.33E-23 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2110 3511b86bd0952cd8915b63b11e725025 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 2.2E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 SUPERFAMILY SSF46689 2 78 1.4E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 Gene3D G3DSA:1.10.357.10 74 195 2.4E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 PANTHER PTHR30055 1 195 1.2E-48 T 19-04-2016 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2110 3511b86bd0952cd8915b63b11e725025 196 PANTHER PTHR30055:SF79 1 195 1.2E-48 T 19-04-2016 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 SUPERFAMILY SSF48179 175 271 3.06E-29 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 PANTHER PTHR23309:SF24 1 271 1.7E-140 T 19-04-2016 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 175 271 1.0E-30 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 Gene3D G3DSA:3.40.50.720 1 176 9.4E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 PANTHER PTHR23309 1 271 1.7E-140 T 19-04-2016 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 SUPERFAMILY SSF51735 1 172 1.11E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 1 172 1.4E-52 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 PIRSF PIRSF000105 1 272 1.1E-72 T 19-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMED_9025 1d4c1de5d65091b037ceaa405c309d1f 272 Gene3D G3DSA:1.10.1040.10 177 271 5.7E-33 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_6840 51428c437399f502e1109060011d8011 391 PIRSF PIRSF016578 1 391 1.4E-123 T 19-04-2016 AMED_6840 51428c437399f502e1109060011d8011 391 Gene3D G3DSA:1.20.140.10 199 388 6.0E-41 T 19-04-2016 AMED_6840 51428c437399f502e1109060011d8011 391 PANTHER PTHR10909 29 369 2.5E-39 T 19-04-2016 AMED_6840 51428c437399f502e1109060011d8011 391 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 23 82 3.9E-7 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6840 51428c437399f502e1109060011d8011 391 Gene3D G3DSA:2.40.110.10 114 198 1.5E-25 T 19-04-2016 AMED_6840 51428c437399f502e1109060011d8011 391 PANTHER PTHR10909:SF316 29 369 2.5E-39 T 19-04-2016 AMED_6840 51428c437399f502e1109060011d8011 391 Gene3D G3DSA:1.10.540.10 4 109 4.7E-35 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6840 51428c437399f502e1109060011d8011 391 SUPERFAMILY SSF47203 230 366 7.42E-9 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_6840 51428c437399f502e1109060011d8011 391 SUPERFAMILY SSF56645 14 205 7.72E-35 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_6840 51428c437399f502e1109060011d8011 391 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 368 5.0E-27 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_0951 5012013ec1faea919160953943b6b959 138 PANTHER PTHR33164 8 120 6.5E-23 T 19-04-2016 AMED_0951 5012013ec1faea919160953943b6b959 138 Gene3D G3DSA:1.10.10.10 4 130 9.4E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0951 5012013ec1faea919160953943b6b959 138 PANTHER PTHR33164:SF15 8 120 6.5E-23 T 19-04-2016 AMED_0951 5012013ec1faea919160953943b6b959 138 Pfam PF12802 MarR family 30 91 1.0E-10 T 19-04-2016 AMED_0951 5012013ec1faea919160953943b6b959 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 3.1E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0951 5012013ec1faea919160953943b6b959 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 3.1E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0951 5012013ec1faea919160953943b6b959 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 3.1E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0951 5012013ec1faea919160953943b6b959 138 SUPERFAMILY SSF46785 3 132 2.22E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0951 5012013ec1faea919160953943b6b959 138 SMART SM00347 25 128 1.6E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 SMART SM00387 320 410 1.5E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 PANTHER PTHR24421:SF19 198 408 1.6E-84 T 19-04-2016 AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 Gene3D G3DSA:3.30.565.10 326 408 6.7E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 PANTHER PTHR24421 198 408 1.6E-84 T 19-04-2016 AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 SUPERFAMILY SSF55874 292 407 2.1E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 Pfam PF07730 Histidine kinase 220 286 9.8E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 Pfam PF13796 Putative sensor 25 191 1.8E-17 T 19-04-2016 IPR025828 Putative sensor domain AMED_0470 dfc49bae19c0e9b5a363c4814ede5588 410 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 373 2.5E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 SUPERFAMILY SSF51735 155 330 2.48E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 SUPERFAMILY SSF50129 4 186 2.89E-53 T 19-04-2016 IPR011032 GroES-like AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 SUPERFAMILY SSF50129 314 365 2.02E-8 T 19-04-2016 IPR011032 GroES-like AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 TIGRFAM TIGR03451 mycoS_dep_FDH: S-(hydroxymethyl)mycothiol dehydrogenase 4 365 2.3E-205 T 19-04-2016 IPR017816 S-(hydroxymethyl)mycothiol dehydrogenase KEGG: 00072+1.1.1.30|KEGG: 00650+1.1.1.30 AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 PANTHER PTHR11695 17 365 5.2E-232 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 Gene3D G3DSA:3.40.50.720 183 308 9.4E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 Gene3D G3DSA:3.90.180.10 2 182 7.8E-54 T 19-04-2016 IPR011032 GroES-like AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 Pfam PF00107 Zinc-binding dehydrogenase 190 322 3.2E-25 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 PANTHER PTHR11695:SF417 17 365 5.2E-232 T 19-04-2016 AMED_8415 d6306c758b3b4f2da8347b91282d0b54 365 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 147 2.5E-26 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 Gene3D G3DSA:3.40.190.10 93 175 9.8E-18 T 19-04-2016 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 SUPERFAMILY SSF46785 4 84 4.81E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 SUPERFAMILY SSF53850 92 289 1.07E-27 T 19-04-2016 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 Gene3D G3DSA:1.10.10.10 3 79 1.7E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.7E-22 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 Pfam PF03466 LysR substrate binding domain 92 280 5.5E-30 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 Gene3D G3DSA:3.40.190.10 176 259 8.7E-21 T 19-04-2016 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 PANTHER PTHR30346 4 306 4.6E-86 T 19-04-2016 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.5E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.5E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.5E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6961 563a4b00d86ae5ba2a5e8e3f1e104636 314 PANTHER PTHR30346:SF6 4 306 4.6E-86 T 19-04-2016 AMED_1873 33b088e6ced81f128fbcd88883c002c1 304 PANTHER PTHR38588 2 201 1.3E-23 T 19-04-2016 AMED_1873 33b088e6ced81f128fbcd88883c002c1 304 PANTHER PTHR38588:SF1 2 201 1.3E-23 T 19-04-2016 AMED_1873 33b088e6ced81f128fbcd88883c002c1 304 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 6 145 6.0E-20 T 19-04-2016 IPR010419 Carbon monoxide dehydrogenase subunit G AMED_1873 33b088e6ced81f128fbcd88883c002c1 304 SUPERFAMILY SSF55961 2 146 4.89E-33 T 19-04-2016 AMED_1873 33b088e6ced81f128fbcd88883c002c1 304 Gene3D G3DSA:3.30.530.20 2 157 1.6E-38 T 19-04-2016 IPR023393 START-like domain AMED_7270 adc2baccf8a6979bcb8fc9899653912c 274 PANTHER PTHR11941 2 255 2.0E-70 T 19-04-2016 AMED_7270 adc2baccf8a6979bcb8fc9899653912c 274 SUPERFAMILY SSF52096 3 256 4.39E-71 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7270 adc2baccf8a6979bcb8fc9899653912c 274 Gene3D G3DSA:1.10.12.10 201 256 6.7E-16 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_7270 adc2baccf8a6979bcb8fc9899653912c 274 Gene3D G3DSA:3.90.226.10 3 199 4.6E-52 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7270 adc2baccf8a6979bcb8fc9899653912c 274 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 256 3.7E-43 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 SMART SM00020 35 232 1.7E-16 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 Gene3D G3DSA:2.40.10.10 68 235 1.0E-23 T 19-04-2016 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 PANTHER PTHR24260:SF50 33 236 3.3E-65 T 19-04-2016 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 PANTHER PTHR24260 33 236 3.3E-65 T 19-04-2016 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 Pfam PF00089 Trypsin 37 232 6.7E-28 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 Gene3D G3DSA:2.40.10.10 36 67 8.2E-10 T 19-04-2016 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 190 202 2.8E-6 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 60 75 2.8E-6 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 107 121 2.8E-6 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0333 d08fa675fc8b5d320574b2880aa89cf0 238 SUPERFAMILY SSF50494 14 236 2.0E-35 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 SUPERFAMILY SSF53850 71 433 2.54E-44 T 19-04-2016 AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 PANTHER PTHR30061:SF1 1 438 3.9E-36 T 19-04-2016 AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 Gene3D G3DSA:3.40.190.10 70 141 1.3E-23 T 19-04-2016 AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 Gene3D G3DSA:3.40.190.10 318 337 1.3E-23 T 19-04-2016 AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 PANTHER PTHR30061 1 438 3.9E-36 T 19-04-2016 AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 Pfam PF13416 Bacterial extracellular solute-binding protein 69 332 1.8E-20 T 19-04-2016 AMED_3244 4e55cdbe72ddecc3a30941c946c00e7a 444 Gene3D G3DSA:3.40.190.10 145 317 4.9E-20 T 19-04-2016 AMED_3276 3e6ed284575bb25c439f3fee2cb3fc83 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 64 1.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3276 3e6ed284575bb25c439f3fee2cb3fc83 226 Gene3D G3DSA:1.10.357.10 8 211 7.6E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3276 3e6ed284575bb25c439f3fee2cb3fc83 226 PANTHER PTHR30055:SF78 2 142 2.1E-14 T 19-04-2016 AMED_3276 3e6ed284575bb25c439f3fee2cb3fc83 226 SUPERFAMILY SSF46689 8 78 6.98E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3276 3e6ed284575bb25c439f3fee2cb3fc83 226 PANTHER PTHR30055 2 142 2.1E-14 T 19-04-2016 AMED_3276 3e6ed284575bb25c439f3fee2cb3fc83 226 SUPERFAMILY SSF48498 90 219 3.78E-26 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 Gene3D G3DSA:3.40.605.10 5 258 3.4E-89 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 SUPERFAMILY SSF53720 4 474 3.53E-153 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 Pfam PF00171 Aldehyde dehydrogenase family 17 471 8.3E-158 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 Gene3D G3DSA:3.40.309.10 259 446 1.0E-61 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_7134 e5528ebed3bc5a08a3d51a8d175d4f15 475 PANTHER PTHR11699 5 475 6.2E-202 T 19-04-2016 AMED_5098 572763ef8252aeec509c3d4cb8bb2124 353 Gene3D G3DSA:3.40.50.2300 40 156 3.5E-23 T 19-04-2016 AMED_5098 572763ef8252aeec509c3d4cb8bb2124 353 SUPERFAMILY SSF53822 43 320 1.06E-48 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5098 572763ef8252aeec509c3d4cb8bb2124 353 Gene3D G3DSA:3.40.50.2300 157 309 3.4E-21 T 19-04-2016 AMED_5098 572763ef8252aeec509c3d4cb8bb2124 353 PANTHER PTHR30036 42 338 7.6E-32 T 19-04-2016 AMED_5098 572763ef8252aeec509c3d4cb8bb2124 353 Pfam PF13407 Periplasmic binding protein domain 44 292 1.1E-44 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1979 4bb14d4d35300c6758d462f4508d6271 269 PANTHER PTHR10108 19 181 1.0E-18 T 19-04-2016 AMED_1979 4bb14d4d35300c6758d462f4508d6271 269 Pfam PF08241 Methyltransferase domain 52 146 1.3E-15 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_1979 4bb14d4d35300c6758d462f4508d6271 269 SUPERFAMILY SSF53335 32 191 2.69E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1979 4bb14d4d35300c6758d462f4508d6271 269 Gene3D G3DSA:3.40.50.150 40 196 3.5E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 358 367 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 Gene3D G3DSA:1.10.630.10 10 417 1.8E-111 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PANTHER PTHR11712 7 415 3.3E-77 T 19-04-2016 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 Pfam PF00067 Cytochrome P450 287 385 6.6E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 103 114 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 205 227 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 356 365 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 287 298 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 332 347 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 170 185 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 304 331 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 365 376 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 PRINTS PR00359 B-class P450 signature 153 169 1.6E-47 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0637 c0ebe18815cf3366a6835960b0a394ba 421 SUPERFAMILY SSF48264 14 417 7.99E-94 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 Gene3D G3DSA:1.10.1740.10 4 112 5.3E-32 T 19-04-2016 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 SUPERFAMILY SSF88659 121 180 1.29E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 PANTHER PTHR30173 1 183 4.4E-43 T 19-04-2016 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 Pfam PF08281 Sigma-70, region 4 123 175 3.1E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 SUPERFAMILY SSF88946 4 107 6.28E-29 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 Gene3D G3DSA:1.10.10.10 122 181 2.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 177 4.0E-28 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9148 709c4f545732bc87c0ed2ea6035b020f 183 Pfam PF04542 Sigma-70 region 2 27 93 1.0E-14 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 136 148 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 Gene3D G3DSA:1.20.140.10 225 386 1.1E-37 T 19-04-2016 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 SUPERFAMILY SSF47203 240 386 3.06E-37 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 224 1.3E-24 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 130 3.9E-29 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 PANTHER PTHR10909:SF152 9 390 5.6E-201 T 19-04-2016 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 Gene3D G3DSA:1.10.540.10 4 131 8.3E-38 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 SUPERFAMILY SSF56645 7 235 7.07E-74 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 383 6.8E-27 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 PANTHER PTHR10909 9 390 5.6E-201 T 19-04-2016 AMED_2266 95721e7cb5369ee8b6586ef239c8ae31 390 Gene3D G3DSA:2.40.110.10 133 224 2.3E-38 T 19-04-2016 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 Pfam PF00717 Peptidase S24-like 74 120 1.3E-6 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 67 83 4.0E-19 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 205 224 4.0E-19 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 155 167 4.0E-19 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PANTHER PTHR12383:SF14 151 267 9.7E-60 T 19-04-2016 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PANTHER PTHR12383:SF14 20 117 9.7E-60 T 19-04-2016 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PANTHER PTHR12383 151 267 9.7E-60 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 PANTHER PTHR12383 20 117 9.7E-60 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 Gene3D G3DSA:2.10.109.10 205 260 3.7E-37 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 Gene3D G3DSA:2.10.109.10 63 117 3.7E-37 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 Gene3D G3DSA:2.10.109.10 149 165 3.7E-37 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 SUPERFAMILY SSF51306 66 118 1.94E-44 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 SUPERFAMILY SSF51306 150 257 1.94E-44 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 Pfam PF10502 Signal peptidase, peptidase S26 148 248 7.3E-9 T 19-04-2016 IPR019533 Peptidase S26 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 ProSitePatterns PS00761 Signal peptidases I signature 3. 210 223 - T 19-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMED_5515 927887aa0ad579c2b2232a8f07dbe15c 311 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 53 250 1.6E-39 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_2553 40f82f563728391282f6304101c72d72 263 PANTHER PTHR33490 86 250 1.9E-46 T 19-04-2016 AMED_2553 40f82f563728391282f6304101c72d72 263 SUPERFAMILY SSF54001 78 234 5.61E-29 T 19-04-2016 AMED_2553 40f82f563728391282f6304101c72d72 263 Gene3D G3DSA:3.90.260.10 143 183 3.0E-7 T 19-04-2016 IPR002931 Transglutaminase-like AMED_2553 40f82f563728391282f6304101c72d72 263 Pfam PF01841 Transglutaminase-like superfamily 114 205 7.3E-19 T 19-04-2016 IPR002931 Transglutaminase-like AMED_2553 40f82f563728391282f6304101c72d72 263 SMART SM00460 147 207 7.6E-13 T 19-04-2016 IPR002931 Transglutaminase-like AMED_2553 40f82f563728391282f6304101c72d72 263 PANTHER PTHR33490:SF3 86 250 1.9E-46 T 19-04-2016 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 Gene3D G3DSA:1.10.630.10 4 387 3.5E-107 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 Pfam PF00067 Cytochrome P450 268 364 1.3E-15 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 336 345 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PANTHER PTHR11712 1 391 1.8E-77 T 19-04-2016 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 186 208 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 85 96 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 134 150 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 343 354 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 334 343 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 285 312 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 151 166 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 313 328 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 PRINTS PR00359 B-class P450 signature 267 278 1.3E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4704 35c38379ae64a3b5d18d8525bbc6b9cf 391 SUPERFAMILY SSF48264 10 384 1.14E-80 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7260 7f5e71009eb2f7e14750ca7a5c48c044 682 Gene3D G3DSA:3.20.20.80 83 317 3.3E-5 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7260 7f5e71009eb2f7e14750ca7a5c48c044 682 Pfam PF14871 Hypothetical glycosyl hydrolase 6 32 164 3.5E-26 T 19-04-2016 IPR028212 Hypothetical glycosyl hydrolase 6 AMED_7260 7f5e71009eb2f7e14750ca7a5c48c044 682 SUPERFAMILY SSF52317 384 562 9.31E-10 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7260 7f5e71009eb2f7e14750ca7a5c48c044 682 SUPERFAMILY SSF51445 81 246 3.86E-8 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6159 399221234be7cdf7d424c3fe973209b3 154 PANTHER PTHR10302 4 102 1.4E-21 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_6159 399221234be7cdf7d424c3fe973209b3 154 Pfam PF00436 Single-strand binding protein family 3 103 3.6E-24 T 19-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 AMED_6159 399221234be7cdf7d424c3fe973209b3 154 Hamap MF_00984 Single-stranded DNA-binding protein. 1 110 23.507 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_6159 399221234be7cdf7d424c3fe973209b3 154 SUPERFAMILY SSF50249 4 154 6.57E-36 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6159 399221234be7cdf7d424c3fe973209b3 154 Gene3D G3DSA:2.40.50.140 3 105 1.2E-31 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6159 399221234be7cdf7d424c3fe973209b3 154 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 115 1.1E-24 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_2361 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 106 2.9E-19 T 19-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AMED_2361 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 PANTHER PTHR30614:SF7 1 215 7.6E-65 T 19-04-2016 AMED_2361 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 211 3.8E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2361 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 PANTHER PTHR30614 1 215 7.6E-65 T 19-04-2016 AMED_2361 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 SUPERFAMILY SSF161098 11 197 8.76E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2361 176a7a6957df1e6cfcc2a11b4dd9fdfd 215 Gene3D G3DSA:1.10.3720.10 7 211 6.7E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7356 e49514e904a9b9f8ed04db8f641d5d4a 271 Gene3D G3DSA:3.40.50.720 1 195 1.6E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7356 e49514e904a9b9f8ed04db8f641d5d4a 271 PANTHER PTHR14194 1 257 1.1E-66 T 19-04-2016 AMED_7356 e49514e904a9b9f8ed04db8f641d5d4a 271 PANTHER PTHR14194:SF59 1 257 1.1E-66 T 19-04-2016 AMED_7356 e49514e904a9b9f8ed04db8f641d5d4a 271 SUPERFAMILY SSF51735 3 234 5.18E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7356 e49514e904a9b9f8ed04db8f641d5d4a 271 Pfam PF13460 NAD(P)H-binding 14 163 3.9E-7 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6462 cde6191c64c55afbf59966017bed5d32 148 Pfam PF12680 SnoaL-like domain 9 121 6.6E-16 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6462 cde6191c64c55afbf59966017bed5d32 148 Gene3D G3DSA:3.10.450.50 6 142 8.3E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_6462 cde6191c64c55afbf59966017bed5d32 148 SUPERFAMILY SSF54427 4 138 2.0E-22 T 19-04-2016 IPR032710 NTF2-like domain AMED_3925 397026b742a2283b6a17ca2ebe897ee4 716 SUPERFAMILY SSF53474 232 351 4.84E-5 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8946 18ea90c8cdd52f4dc4a11dd1fd972d54 909 PANTHER PTHR22683 380 565 4.1E-27 T 19-04-2016 AMED_8946 18ea90c8cdd52f4dc4a11dd1fd972d54 909 SUPERFAMILY SSF52540 389 592 2.66E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8946 18ea90c8cdd52f4dc4a11dd1fd972d54 909 Gene3D G3DSA:3.40.50.300 391 590 1.6E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8946 18ea90c8cdd52f4dc4a11dd1fd972d54 909 Pfam PF01580 FtsK/SpoIIIE family 386 566 1.7E-20 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 328 1.5E-30 T 19-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 PANTHER PTHR13779 1 332 1.3E-157 T 19-04-2016 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 9 237 1.5E-106 T 19-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 350 159.877 T 19-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 SUPERFAMILY SSF46785 258 332 3.81E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 SMART SM00382 53 186 7.9E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 328 1.4E-136 T 19-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 Gene3D G3DSA:3.40.50.300 22 174 1.2E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 SUPERFAMILY SSF52540 22 252 1.31E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 Gene3D G3DSA:1.10.8.60 185 257 4.8E-31 T 19-04-2016 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 Gene3D G3DSA:1.10.10.10 259 329 1.8E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 255 329 6.0E-23 T 19-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMED_5299 527fca84d0bc45194ddeeaa3d5374407 350 PANTHER PTHR13779:SF25 1 332 1.3E-157 T 19-04-2016 AMED_2296 7bdda077439e11b9b5b3dace6b4aa87c 125 Gene3D G3DSA:1.10.1660.10 4 120 3.7E-31 T 19-04-2016 AMED_2296 7bdda077439e11b9b5b3dace6b4aa87c 125 SUPERFAMILY SSF46955 4 118 7.69E-29 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_2296 7bdda077439e11b9b5b3dace6b4aa87c 125 Pfam PF13411 MerR HTH family regulatory protein 4 65 6.9E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2296 7bdda077439e11b9b5b3dace6b4aa87c 125 PANTHER PTHR30204 2 117 5.0E-35 T 19-04-2016 AMED_2296 7bdda077439e11b9b5b3dace6b4aa87c 125 PANTHER PTHR30204:SF2 2 117 5.0E-35 T 19-04-2016 AMED_2296 7bdda077439e11b9b5b3dace6b4aa87c 125 SMART SM00422 4 73 3.4E-23 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_7437 e47a727c0b150273f9a571e24a55d0b6 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 59 1.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7437 e47a727c0b150273f9a571e24a55d0b6 206 Gene3D G3DSA:1.10.357.10 3 198 2.7E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7437 e47a727c0b150273f9a571e24a55d0b6 206 PANTHER PTHR30055 2 125 6.6E-20 T 19-04-2016 AMED_7437 e47a727c0b150273f9a571e24a55d0b6 206 PANTHER PTHR30055:SF73 2 125 6.6E-20 T 19-04-2016 AMED_7437 e47a727c0b150273f9a571e24a55d0b6 206 SUPERFAMILY SSF46689 3 74 7.18E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4510 4d9ab29d1405a682756a7d1c4acfa34b 323 SUPERFAMILY SSF161098 76 304 7.33E-59 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4510 4d9ab29d1405a682756a7d1c4acfa34b 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 311 6.2E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4510 4d9ab29d1405a682756a7d1c4acfa34b 323 PANTHER PTHR30193:SF6 9 320 6.8E-85 T 19-04-2016 AMED_4510 4d9ab29d1405a682756a7d1c4acfa34b 323 PANTHER PTHR30193 9 320 6.8E-85 T 19-04-2016 AMED_4510 4d9ab29d1405a682756a7d1c4acfa34b 323 Gene3D G3DSA:1.10.3720.10 28 307 6.5E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Pfam PF00226 DnaJ domain 10 72 4.2E-25 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF49493 138 194 1.96E-20 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 SMART SM00271 9 67 2.6E-26 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.10.230.10 168 234 1.4E-21 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF49493 284 367 4.45E-18 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF46565 9 107 1.44E-28 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 10 374 5.1E-118 T 19-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF49493 238 291 1.96E-20 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.60.260.20 235 279 2.7E-20 T 19-04-2016 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.60.260.20 139 167 2.7E-20 T 19-04-2016 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Pfam PF01556 DnaJ C terminal domain 145 357 1.1E-35 T 19-04-2016 IPR002939 Chaperone DnaJ, C-terminal AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 SUPERFAMILY SSF57938 159 234 2.75E-19 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 PANTHER PTHR24078:SF190 9 386 2.6E-115 T 19-04-2016 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 47 67 9.2E-21 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 30 45 9.2E-21 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 67 86 9.2E-21 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 PRINTS PR00625 DnaJ domain signature 12 30 9.2E-21 T 19-04-2016 IPR001623 DnaJ domain AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 7 387 35.866 T 19-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Pfam PF00684 DnaJ central domain 172 232 6.4E-13 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 PANTHER PTHR24078 9 386 2.6E-115 T 19-04-2016 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:2.60.260.20 281 357 3.9E-19 T 19-04-2016 AMED_9164 ff761ed12d8019f8ad1c80b4780ee4e7 391 Gene3D G3DSA:1.10.287.110 4 96 2.1E-28 T 19-04-2016 IPR001623 DnaJ domain AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 9 307 2.1E-111 T 19-04-2016 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 Gene3D G3DSA:3.40.50.1100 35 135 6.9E-25 T 19-04-2016 AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 PANTHER PTHR10314:SF35 27 310 2.9E-63 T 19-04-2016 AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 PANTHER PTHR10314 27 310 2.9E-63 T 19-04-2016 AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 SUPERFAMILY SSF53686 19 309 1.19E-69 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 273 1.6E-51 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4039 9b852c3e78e6ed40d3333cad709a6eb5 329 Gene3D G3DSA:3.40.50.1100 136 306 9.1E-45 T 19-04-2016 AMED_8952 86559ece086307b24f34bbe51810dbf8 821 PANTHER PTHR33607 228 797 3.5E-175 T 19-04-2016 AMED_8952 86559ece086307b24f34bbe51810dbf8 821 SUPERFAMILY SSF56219 496 796 1.87E-30 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_8952 86559ece086307b24f34bbe51810dbf8 821 Pfam PF00932 Lamin Tail Domain 32 127 4.7E-10 T 19-04-2016 IPR001322 Lamin Tail Domain AMED_8952 86559ece086307b24f34bbe51810dbf8 821 PANTHER PTHR33607:SF1 228 797 3.5E-175 T 19-04-2016 AMED_8952 86559ece086307b24f34bbe51810dbf8 821 Gene3D G3DSA:3.60.10.10 495 796 2.8E-29 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_8952 86559ece086307b24f34bbe51810dbf8 821 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 498 789 2.0E-10 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 2 15 8.4E-8 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 30 42 8.4E-8 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 177 187 8.4E-8 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PRINTS PR00301 70kDa heat shock protein signature 309 325 8.4E-8 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 SUPERFAMILY SSF53067 3 156 2.4E-23 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.30.420.40 176 204 1.0E-15 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.30.420.40 294 333 1.0E-15 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.30.420.40 3 175 1.1E-24 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Gene3D G3DSA:3.90.640.10 205 285 4.7E-5 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 Pfam PF00012 Hsp70 protein 90 351 9.3E-28 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PANTHER PTHR19375:SF154 2 350 2.2E-41 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 SUPERFAMILY SSF53067 166 354 2.05E-31 T 19-04-2016 AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 312 326 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_2341 b006e28b0cc0a62b4bd4bfe9be23f4fd 614 PANTHER PTHR19375 2 350 2.2E-41 T 19-04-2016 AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 Gene3D G3DSA:3.30.360.10 146 318 8.2E-50 T 19-04-2016 AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 SUPERFAMILY SSF51735 5 156 3.04E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 PANTHER PTHR22604 1 318 4.1E-98 T 19-04-2016 AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 PANTHER PTHR22604:SF105 1 318 4.1E-98 T 19-04-2016 AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 122 6.1E-22 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 SUPERFAMILY SSF55347 130 287 4.91E-35 T 19-04-2016 AMED_8986 4bb599c8152dc053f62e39e41e5ef774 321 Gene3D G3DSA:3.40.50.720 2 145 1.3E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0103 5b3da728c44341a1cb913beae5771ab8 217 PANTHER PTHR10108 32 150 1.3E-31 T 19-04-2016 AMED_0103 5b3da728c44341a1cb913beae5771ab8 217 SUPERFAMILY SSF53335 26 192 5.06E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0103 5b3da728c44341a1cb913beae5771ab8 217 Gene3D G3DSA:3.40.50.150 32 193 3.4E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0103 5b3da728c44341a1cb913beae5771ab8 217 Pfam PF08241 Methyltransferase domain 51 144 2.4E-27 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_5053 f0de759c74c41cd207fe20ddbf7fa60f 391 Pfam PF13271 Domain of unknown function (DUF4062) 1 88 1.1E-8 T 19-04-2016 IPR025139 Domain of unknown function DUF4062 AMED_5053 f0de759c74c41cd207fe20ddbf7fa60f 391 Gene3D G3DSA:3.40.50.300 195 224 2.1E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5053 f0de759c74c41cd207fe20ddbf7fa60f 391 Pfam PF00931 NB-ARC domain 199 310 7.6E-7 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_5053 f0de759c74c41cd207fe20ddbf7fa60f 391 SUPERFAMILY SSF52540 162 354 1.92E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:1.10.10.10 864 931 1.1E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SMART SM00421 871 928 3.6E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:1.25.40.10 688 837 1.4E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:1.25.40.10 499 646 1.4E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SMART SM00382 32 193 1.8E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF52540 112 248 3.07E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF52540 9 74 3.07E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF48452 410 569 8.42E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF46894 865 931 5.1E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 874 888 1.9E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 904 916 1.9E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 888 904 1.9E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF00196 Bacterial regulatory proteins, luxR family 872 927 9.0E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF13432 Tetratricopeptide repeat 588 646 0.012 T 19-04-2016 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF13432 Tetratricopeptide repeat 510 575 0.0017 T 19-04-2016 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF13432 Tetratricopeptide repeat 433 497 9.2E-5 T 19-04-2016 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Pfam PF13191 AAA ATPase domain 11 169 7.8E-24 T 19-04-2016 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 SUPERFAMILY SSF48452 535 646 6.51E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 PANTHER PTHR16305 771 836 4.2E-50 T 19-04-2016 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 PANTHER PTHR16305 9 468 4.2E-50 T 19-04-2016 AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:3.40.50.300 112 148 9.3E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 Gene3D G3DSA:3.40.50.300 10 74 9.3E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8154 bed11007c3fa0c8f38d4f76e633da623 935 ProSitePatterns PS00622 LuxR-type HTH domain signature. 888 915 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 PANTHER PTHR22683:SF1 1210 1301 6.9E-232 T 19-04-2016 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 PANTHER PTHR22683:SF1 4 689 6.9E-232 T 19-04-2016 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 PANTHER PTHR22683:SF1 876 1160 6.9E-232 T 19-04-2016 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 SUPERFAMILY SSF52540 1054 1235 8.5E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 SUPERFAMILY SSF52540 428 655 5.51E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 PANTHER PTHR22683 1210 1301 6.9E-232 T 19-04-2016 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 PANTHER PTHR22683 4 689 6.9E-232 T 19-04-2016 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 PANTHER PTHR22683 876 1160 6.9E-232 T 19-04-2016 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 TIGRFAM TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb 731 1301 5.8E-224 T 19-04-2016 IPR023837 EccCb-like, Actinobacteria AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 TIGRFAM TIGR03924 T7SS_EccC_a: type VII secretion protein EccCa 13 686 1.3E-253 T 19-04-2016 IPR023836 EccCa-like, Actinobacteria AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 SMART SM00382 812 990 3.6E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 SMART SM00382 1097 1260 18.0 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 SMART SM00382 463 643 0.1 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 Gene3D G3DSA:3.40.50.300 435 657 1.9E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 Gene3D G3DSA:3.40.50.300 806 995 2.4E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 SUPERFAMILY SSF52540 750 1014 6.65E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 Pfam PF01580 FtsK/SpoIIIE family 794 1027 9.1E-47 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 Pfam PF01580 FtsK/SpoIIIE family 434 562 2.5E-25 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_2238 e71095dc5e4c73ab81db45083b07e5e6 1308 Pfam PF01580 FtsK/SpoIIIE family 1089 1175 1.3E-5 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_4405 38e5454b187519bf2a91bb817defac12 368 Pfam PF13407 Periplasmic binding protein domain 45 321 1.4E-68 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_4405 38e5454b187519bf2a91bb817defac12 368 Gene3D G3DSA:3.40.50.2300 157 354 1.6E-37 T 19-04-2016 AMED_4405 38e5454b187519bf2a91bb817defac12 368 PANTHER PTHR30036:SF0 1 368 4.3E-170 T 19-04-2016 AMED_4405 38e5454b187519bf2a91bb817defac12 368 PANTHER PTHR30036 1 368 4.3E-170 T 19-04-2016 AMED_4405 38e5454b187519bf2a91bb817defac12 368 Gene3D G3DSA:3.40.50.2300 45 156 9.4E-30 T 19-04-2016 AMED_4405 38e5454b187519bf2a91bb817defac12 368 SUPERFAMILY SSF53822 44 354 3.64E-70 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5981 1094386dc5f873c1540689356412448b 329 Pfam PF07730 Histidine kinase 136 198 6.3E-8 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5981 1094386dc5f873c1540689356412448b 329 SUPERFAMILY SSF55874 193 316 1.5E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5981 1094386dc5f873c1540689356412448b 329 PANTHER PTHR24421:SF26 37 329 6.9E-22 T 19-04-2016 AMED_5981 1094386dc5f873c1540689356412448b 329 PANTHER PTHR24421 37 329 6.9E-22 T 19-04-2016 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 Gene3D G3DSA:3.40.50.9100 3 141 2.1E-56 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 PANTHER PTHR21272 1 141 3.2E-73 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 139 6.0E-47 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 Pfam PF01220 Dehydroquinase class II 4 138 9.4E-53 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 PIRSF PIRSF001399 1 142 2.6E-56 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 139 7.3E-55 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 SUPERFAMILY SSF52304 2 141 5.23E-55 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2736 c03fa43b75e84d6a16d3ea67191208ce 143 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 143 61.178 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 334 355 - T 19-04-2016 IPR021115 Pyridoxal-phosphate binding site GO:0016831 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 PANTHER PTHR11999 116 516 3.3E-128 T 19-04-2016 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 Gene3D G3DSA:3.40.640.10 153 403 3.4E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 PANTHER PTHR11999:SF87 116 516 3.3E-128 T 19-04-2016 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 124 446 8.6E-40 T 19-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 Gene3D G3DSA:3.90.1150.10 404 519 2.5E-28 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2692 238f159603c5e13dafb7b0406bf45165 533 SUPERFAMILY SSF53383 114 518 4.4E-91 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6992 d15f9ecade96879de559434b160cb037 328 Pfam PF14716 Helix-hairpin-helix domain 4 69 3.6E-15 T 19-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain AMED_6992 d15f9ecade96879de559434b160cb037 328 PIRSF PIRSF036978 1 328 3.8E-151 T 19-04-2016 IPR017078 Uncharacterised conserved protein UCP036978, histidinol phosphatase-related hydrolase, SCO0789 AMED_6992 d15f9ecade96879de559434b160cb037 328 SMART SM00481 97 176 2.9E-14 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_6992 d15f9ecade96879de559434b160cb037 328 SUPERFAMILY SSF89550 96 323 4.71E-48 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_6992 d15f9ecade96879de559434b160cb037 328 SUPERFAMILY SSF47802 3 71 6.41E-12 T 19-04-2016 IPR010996 DNA polymerase beta-like, N-terminal domain AMED_6992 d15f9ecade96879de559434b160cb037 328 Gene3D G3DSA:3.20.20.140 96 321 2.6E-45 T 19-04-2016 AMED_6992 d15f9ecade96879de559434b160cb037 328 Gene3D G3DSA:1.10.8.310 5 70 8.0E-9 T 19-04-2016 IPR027420 DNA polymerase beta, N-terminal domain AMED_6992 d15f9ecade96879de559434b160cb037 328 PANTHER PTHR36928 6 326 6.2E-89 T 19-04-2016 AMED_9160 97cd3906239b89bc96fd9573689e7983 238 Gene3D G3DSA:3.40.50.1820 3 233 3.6E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9160 97cd3906239b89bc96fd9573689e7983 238 PANTHER PTHR17630 2 236 2.4E-43 T 19-04-2016 AMED_9160 97cd3906239b89bc96fd9573689e7983 238 SUPERFAMILY SSF53474 3 230 1.87E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9160 97cd3906239b89bc96fd9573689e7983 238 Pfam PF01738 Dienelactone hydrolase family 12 229 1.3E-49 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 Pfam PF01494 FAD binding domain 8 339 1.0E-23 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 SUPERFAMILY SSF51905 8 168 8.8E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 SUPERFAMILY SSF51905 267 376 8.8E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 PANTHER PTHR13789:SF251 5 372 1.4E-120 T 19-04-2016 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 2.5E-15 T 19-04-2016 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 2.5E-15 T 19-04-2016 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 2.5E-15 T 19-04-2016 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 2.5E-15 T 19-04-2016 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 Gene3D G3DSA:3.50.50.60 7 174 2.7E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 Gene3D G3DSA:3.50.50.60 268 351 2.7E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0954 dab230ddc2aed61338bbf3d2d2093a42 399 PANTHER PTHR13789 5 372 1.4E-120 T 19-04-2016 AMED_1779 11ac13c7a40ead6d975d14733aa1f03c 424 PANTHER PTHR33371:SF7 1 419 3.8E-86 T 19-04-2016 AMED_1779 11ac13c7a40ead6d975d14733aa1f03c 424 Pfam PF02470 MlaD protein 41 116 1.6E-8 T 19-04-2016 IPR003399 Mce/MlaD AMED_1779 11ac13c7a40ead6d975d14733aa1f03c 424 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 16 296 2.9E-52 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1779 11ac13c7a40ead6d975d14733aa1f03c 424 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 148 413 2.2E-68 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_1779 11ac13c7a40ead6d975d14733aa1f03c 424 PANTHER PTHR33371 1 419 3.8E-86 T 19-04-2016 AMED_7278 1c33cfe66c1e20ddb2ec404c20cdbc27 275 Pfam PF05681 Fumarate hydratase (Fumerase) 8 263 2.5E-65 T 19-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMED_7278 1c33cfe66c1e20ddb2ec404c20cdbc27 275 PANTHER PTHR30389 9 270 2.2E-57 T 19-04-2016 AMED_7278 1c33cfe66c1e20ddb2ec404c20cdbc27 275 PANTHER PTHR30389:SF1 9 270 2.2E-57 T 19-04-2016 AMED_7278 1c33cfe66c1e20ddb2ec404c20cdbc27 275 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 8 264 1.9E-62 T 19-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMED_7979 0a6b0765e960566343d21a51817afc22 340 Gene3D G3DSA:3.40.50.300 116 266 4.0E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7979 0a6b0765e960566343d21a51817afc22 340 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 73 325 1.3E-43 T 19-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 AMED_7979 0a6b0765e960566343d21a51817afc22 340 SUPERFAMILY SSF52540 116 326 2.14E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7979 0a6b0765e960566343d21a51817afc22 340 Gene3D G3DSA:1.10.40.50 268 328 7.5E-13 T 19-04-2016 AMED_7979 0a6b0765e960566343d21a51817afc22 340 PANTHER PTHR32120 6 329 3.3E-72 T 19-04-2016 AMED_7979 0a6b0765e960566343d21a51817afc22 340 Pfam PF03193 Protein of unknown function, DUF258 99 266 1.3E-41 T 19-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 AMED_7979 0a6b0765e960566343d21a51817afc22 340 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 36 333 25.547 T 19-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 AMED_4750 25df03edb5ee4a64aecfdbbd2ab17a95 431 PIRSF PIRSF001495 5 427 6.9E-127 T 19-04-2016 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728|UniPathway: UPA00561 AMED_4750 25df03edb5ee4a64aecfdbbd2ab17a95 431 Gene3D G3DSA:3.20.20.240 10 367 1.8E-127 T 19-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 AMED_4750 25df03edb5ee4a64aecfdbbd2ab17a95 431 Pfam PF06368 Methylaspartate mutase E chain (MutE) 15 393 1.7E-81 T 19-04-2016 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728|UniPathway: UPA00561 AMED_4750 25df03edb5ee4a64aecfdbbd2ab17a95 431 SUPERFAMILY SSF51703 7 411 6.2E-105 T 19-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 Gene3D G3DSA:3.40.50.720 12 261 1.7E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 1.3E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 196 1.3E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 1.3E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 Pfam PF00106 short chain dehydrogenase 19 215 2.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 166 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 215 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 103 114 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 196 1.2E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PANTHER PTHR24322 177 208 4.0E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 PANTHER PTHR24322 22 160 4.0E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3817 0dadbb1dab514b2106f69775491c0d8e 282 SUPERFAMILY SSF51735 14 259 4.93E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 TIGRFAM TIGR02079 THD1: threonine dehydratase 11 418 1.3E-171 T 19-04-2016 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 Gene3D G3DSA:3.40.50.1100 143 330 4.8E-56 T 19-04-2016 AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 312 6.4E-77 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 PANTHER PTHR10314:SF30 12 364 4.4E-139 T 19-04-2016 AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 PANTHER PTHR10314 12 364 4.4E-139 T 19-04-2016 AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 19-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 SUPERFAMILY SSF53686 11 362 3.01E-94 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 Gene3D G3DSA:3.40.50.1100 55 142 2.6E-29 T 19-04-2016 AMED_1634 2a0438b1ea0c2ce4f296332ce83df865 418 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 325 417 8.4E-25 T 19-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 Pfam PF00561 alpha/beta hydrolase fold 27 266 2.2E-26 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 Gene3D G3DSA:3.40.50.1820 4 281 2.5E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00412 Epoxide hydrolase signature 255 277 9.6E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00412 Epoxide hydrolase signature 33 51 9.6E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00412 Epoxide hydrolase signature 113 126 9.6E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PANTHER PTHR10992 4 280 3.3E-113 T 19-04-2016 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 1.4E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.4E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 1.4E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 SUPERFAMILY SSF53474 4 280 2.8E-67 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1336 ad6c9e128b8499e03850aec467fc1116 289 PANTHER PTHR10992:SF870 4 280 3.3E-113 T 19-04-2016 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 PANTHER PTHR10173:SF6 2 154 3.0E-66 T 19-04-2016 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 PANTHER PTHR10173 2 154 3.0E-66 T 19-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 7 154 6.1E-50 T 19-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 5 160 34.568 T 19-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 Pfam PF01625 Peptide methionine sulfoxide reductase 8 154 4.8E-57 T 19-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 Gene3D G3DSA:3.30.1060.10 3 155 4.6E-66 T 19-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 AMED_5926 b5cc3a787309cc36088bbb585f99b236 171 SUPERFAMILY SSF55068 3 163 8.37E-65 T 19-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 Pfam PF01614 Bacterial transcriptional regulator 123 241 1.2E-27 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 PANTHER PTHR30136:SF2 9 243 2.8E-58 T 19-04-2016 AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 Gene3D G3DSA:3.30.450.40 74 244 4.6E-50 T 19-04-2016 IPR029016 GAF domain-like AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 Pfam PF09339 IclR helix-turn-helix domain 9 58 1.0E-13 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 SMART SM00346 6 94 1.5E-20 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 PANTHER PTHR30136 9 243 2.8E-58 T 19-04-2016 AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 Gene3D G3DSA:1.10.10.10 4 73 5.0E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 SUPERFAMILY SSF46785 9 78 7.44E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7183 fe03646253de7d3d27122ffa9f5d1624 252 SUPERFAMILY SSF55781 69 243 1.63E-43 T 19-04-2016 IPR029016 GAF domain-like AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 Gene3D G3DSA:3.90.180.10 1 147 9.3E-28 T 19-04-2016 IPR011032 GroES-like AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 PANTHER PTHR11695 15 329 1.2E-76 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 SUPERFAMILY SSF51735 125 291 2.34E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 Gene3D G3DSA:3.40.50.720 148 298 6.9E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 SMART SM00829 10 327 5.5E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 SUPERFAMILY SSF50129 1 148 7.3E-31 T 19-04-2016 IPR011032 GroES-like AMED_3546 4632a359e55d4b1c824dcc9545469bab 329 Pfam PF00107 Zinc-binding dehydrogenase 159 287 2.1E-19 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 ProSitePatterns PS01125 ROK family signature. 216 243 - T 19-04-2016 IPR000600 ROK family AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 Gene3D G3DSA:3.30.420.40 222 381 7.4E-43 T 19-04-2016 AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 SUPERFAMILY SSF53067 81 398 1.6E-48 T 19-04-2016 AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 SUPERFAMILY SSF46785 13 73 1.74E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 Gene3D G3DSA:3.30.420.40 78 221 1.6E-42 T 19-04-2016 AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 PANTHER PTHR18964 58 398 2.5E-68 T 19-04-2016 AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 PANTHER PTHR18964:SF123 58 398 2.5E-68 T 19-04-2016 AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 Pfam PF00480 ROK family 84 398 1.6E-46 T 19-04-2016 IPR000600 ROK family AMED_3740 3a267e2af9eae523ea0d952574c1f981 425 Gene3D G3DSA:1.10.10.10 12 77 6.3E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.980 1247 1396 2.2E-43 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.30.300.30 436 542 9.6E-15 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF47336 580 650 3.53E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 PANTHER PTHR24095 5 1564 4.5E-277 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.980 165 326 9.4E-32 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 SMART SM00823 Phosphopantetheine attachment site 1588 1645 3.0E-6 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_6237 df24182ac00effc999c6f230c655589f 1698 SMART SM00823 Phosphopantetheine attachment site 582 651 0.11 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_6237 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF52777 822 1053 9.34E-45 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:2.30.38.10 1397 1473 3.8E-28 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF47336 1581 1654 3.14E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF56801 1053 1601 5.76E-151 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1115 1507 1.3E-130 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:1.10.1200.10 1591 1658 3.6E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:1.10.1200.10 573 649 9.8E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF00668 Condensation domain 663 927 1.9E-45 T 19-04-2016 IPR001242 Condensation domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF52777 662 833 9.34E-39 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.30.300.30 1478 1590 3.2E-32 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 SUPERFAMILY SSF56801 5 546 8.24E-99 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:2.30.38.10 374 435 2.3E-12 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF13193 AMP-binding enzyme C-terminal domain 1491 1564 2.4E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6237 df24182ac00effc999c6f230c655589f 1698 ProSitePatterns PS00012 Phosphopantetheine attachment site. 606 621 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_6237 df24182ac00effc999c6f230c655589f 1698 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1612 1627 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF00501 AMP-binding enzyme 1094 1483 8.4E-94 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF00501 AMP-binding enzyme 11 444 2.3E-72 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF13745 HxxPF-repeated domain 951 1039 5.1E-15 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 PANTHER PTHR24095:SF137 5 1564 4.5E-277 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF00550 Phosphopantetheine attachment site 1590 1653 8.0E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 Pfam PF00550 Phosphopantetheine attachment site 583 642 2.8E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.980 1089 1246 9.4E-44 T 19-04-2016 AMED_6237 df24182ac00effc999c6f230c655589f 1698 Gene3D G3DSA:3.40.50.980 5 164 1.2E-32 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 Gene3D G3DSA:3.50.50.60 4 276 1.5E-64 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3887 5963f0439975ef73324edd5cd6106687 553 Gene3D G3DSA:3.50.50.60 487 551 1.5E-64 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PANTHER PTHR11632 2 399 2.3E-261 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PANTHER PTHR11632 472 553 2.3E-261 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PIRSF PIRSF036654 1 553 2.2E-278 T 19-04-2016 IPR014614 Uncharacterised conserved protein UCP036654 GO:0016627|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.-|UniPathway: UPA00062 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 175 190 7.9E-5 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 7.9E-5 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PANTHER PTHR11632:SF38 2 399 2.3E-261 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 PANTHER PTHR11632:SF38 472 553 2.3E-261 T 19-04-2016 AMED_3887 5963f0439975ef73324edd5cd6106687 553 SUPERFAMILY SSF51905 490 551 3.89E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3887 5963f0439975ef73324edd5cd6106687 553 SUPERFAMILY SSF51905 2 281 3.89E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3887 5963f0439975ef73324edd5cd6106687 553 Pfam PF00890 FAD binding domain 6 535 1.0E-108 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_5287 da5a23eda5fa443a589669a3f2bf4d15 262 SUPERFAMILY SSF52096 4 260 6.83E-68 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5287 da5a23eda5fa443a589669a3f2bf4d15 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 260 5.1E-48 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_5287 da5a23eda5fa443a589669a3f2bf4d15 262 Gene3D G3DSA:3.90.226.10 8 260 6.7E-66 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5287 da5a23eda5fa443a589669a3f2bf4d15 262 PANTHER PTHR11941 12 259 1.1E-66 T 19-04-2016 AMED_5287 da5a23eda5fa443a589669a3f2bf4d15 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 SUPERFAMILY SSF53686 17 313 6.81E-68 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 PANTHER PTHR10314:SF109 29 314 9.1E-67 T 19-04-2016 AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 Gene3D G3DSA:3.40.50.1100 139 308 7.2E-46 T 19-04-2016 AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 PANTHER PTHR10314 29 314 9.1E-67 T 19-04-2016 AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 Gene3D G3DSA:3.40.50.1100 37 138 4.3E-22 T 19-04-2016 AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 293 6.3E-46 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_6227 a27d01b576c3b20e0e6f27aa842135b2 330 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 10 309 4.1E-119 T 19-04-2016 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA AMED_2398 4b588d42a00cd636859f258c9ecd18a8 160 PANTHER PTHR10204:SF37 11 156 2.7E-24 T 19-04-2016 AMED_2398 4b588d42a00cd636859f258c9ecd18a8 160 SUPERFAMILY SSF52218 29 141 1.09E-25 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_2398 4b588d42a00cd636859f258c9ecd18a8 160 Pfam PF02525 Flavodoxin-like fold 29 139 7.8E-21 T 19-04-2016 IPR003680 Flavodoxin-like fold AMED_2398 4b588d42a00cd636859f258c9ecd18a8 160 PANTHER PTHR10204 11 156 2.7E-24 T 19-04-2016 AMED_2398 4b588d42a00cd636859f258c9ecd18a8 160 Gene3D G3DSA:3.40.50.360 29 155 1.7E-31 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_3710 e22d8d1a001ac05918c6c1c6b403b665 315 PANTHER PTHR14194 1 313 1.7E-74 T 19-04-2016 AMED_3710 e22d8d1a001ac05918c6c1c6b403b665 315 Pfam PF05368 NmrA-like family 7 250 5.8E-42 T 19-04-2016 IPR008030 NmrA-like domain AMED_3710 e22d8d1a001ac05918c6c1c6b403b665 315 PANTHER PTHR14194:SF46 1 313 1.7E-74 T 19-04-2016 AMED_3710 e22d8d1a001ac05918c6c1c6b403b665 315 SUPERFAMILY SSF51735 4 284 9.87E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3710 e22d8d1a001ac05918c6c1c6b403b665 315 Gene3D G3DSA:3.40.50.720 1 244 2.5E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 SMART SM00344 1 96 9.1E-29 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 ProSitePatterns PS00519 AsnC-type HTH domain signature. 7 33 - T 19-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 PANTHER PTHR30154 3 130 3.6E-59 T 19-04-2016 AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 Pfam PF01037 Lrp/AsnC ligand binding domain 55 126 2.6E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 Gene3D G3DSA:1.10.10.10 2 41 1.2E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 SUPERFAMILY SSF54909 49 132 2.82E-15 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 Gene3D G3DSA:3.30.70.920 42 121 1.9E-20 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 PANTHER PTHR30154:SF26 3 130 3.6E-59 T 19-04-2016 AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 Pfam PF13404 AsnC-type helix-turn-helix domain 2 29 3.8E-9 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 16 35 2.5E-6 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 16 2.5E-6 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_0543 b52155b328acac3e2c07dfc56f642b77 136 SUPERFAMILY SSF46785 2 49 5.96E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 PANTHER PTHR22845:SF4 187 664 3.0E-76 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF52540 302 571 4.93E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM01043 160 286 2.8E-28 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 PRINTS PR00364 Disease resistance protein signature 413 427 6.6E-7 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 PRINTS PR00364 Disease resistance protein signature 335 350 6.6E-7 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 PRINTS PR00364 Disease resistance protein signature 500 514 6.6E-7 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 PANTHER PTHR22845 187 664 3.0E-76 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF48452 911 1060 6.83E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF13424 Tetratricopeptide repeat 989 1058 1.7E-8 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF13424 Tetratricopeptide repeat 914 980 4.4E-14 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF13424 Tetratricopeptide repeat 792 859 2.2E-12 T 19-04-2016 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF48452 155 308 1.45E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF03704 Bacterial transcriptional activator domain 170 286 5.4E-24 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF00486 Transcriptional regulatory protein, C terminal 89 153 5.1E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 748 781 11.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 788 821 47.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 828 861 18.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 988 1021 11.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 948 981 0.041 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 868 901 11.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 1028 1061 1.8 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00028 908 941 0.24 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.10.10.10 76 155 6.2E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.10.260.40 7 59 1.4E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00530 10 66 1.3E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF01381 Helix-turn-helix 11 60 1.1E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:3.40.50.300 312 459 1.4E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF47413 7 59 2.34E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.25.40.10 704 845 3.3E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.25.40.10 210 266 3.3E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF12862 Anaphase-promoting complex subunit 5 754 787 3.8 T 19-04-2016 IPR026000 Anaphase-promoting complex subunit 5 UniPathway: UPA00143 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF46894 69 153 5.1E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Pfam PF00931 NB-ARC domain 332 574 3.5E-7 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SUPERFAMILY SSF48452 722 897 2.42E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 SMART SM00862 83 153 1.7E-12 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2029 0828d5d82ab4e398f44b4b7e824d6df4 1081 Gene3D G3DSA:1.25.40.10 846 1057 1.3E-32 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7411 bb27d76704be2f57ee52ff8d6ee782bd 607 PANTHER PTHR32438 35 603 9.3E-176 T 19-04-2016 AMED_7411 bb27d76704be2f57ee52ff8d6ee782bd 607 SUPERFAMILY SSF69318 141 405 1.96E-14 T 19-04-2016 AMED_7411 bb27d76704be2f57ee52ff8d6ee782bd 607 SUPERFAMILY SSF69318 528 569 1.96E-14 T 19-04-2016 AMED_7411 bb27d76704be2f57ee52ff8d6ee782bd 607 PANTHER PTHR32438:SF6 35 603 9.3E-176 T 19-04-2016 AMED_7411 bb27d76704be2f57ee52ff8d6ee782bd 607 Gene3D G3DSA:2.130.10.130 140 391 3.1E-7 T 19-04-2016 AMED_3899 882e98b31ff25c2b0e25492f0891c9f5 490 PANTHER PTHR11785:SF216 33 479 1.5E-71 T 19-04-2016 AMED_3899 882e98b31ff25c2b0e25492f0891c9f5 490 PIRSF PIRSF006060 32 489 9.3E-45 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_3899 882e98b31ff25c2b0e25492f0891c9f5 490 PANTHER PTHR11785 33 479 1.5E-71 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_3899 882e98b31ff25c2b0e25492f0891c9f5 490 Pfam PF13520 Amino acid permease 33 460 7.7E-54 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_7676 6e70161def367d429eed642157d7658f 145 PANTHER PTHR33452:SF4 28 145 1.0E-28 T 19-04-2016 AMED_7676 6e70161def367d429eed642157d7658f 145 PANTHER PTHR33452 28 145 1.0E-28 T 19-04-2016 AMED_7676 6e70161def367d429eed642157d7658f 145 Pfam PF07681 DoxX 27 103 3.2E-7 T 19-04-2016 IPR032808 DoxX family AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 SUPERFAMILY SSF88946 8 93 4.71E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 Gene3D G3DSA:1.10.1740.10 12 95 4.3E-11 T 19-04-2016 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 Pfam PF04542 Sigma-70 region 2 10 79 2.2E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 SUPERFAMILY SSF88659 103 161 1.72E-10 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 SUPERFAMILY SSF54427 173 283 6.12E-13 T 19-04-2016 IPR032710 NTF2-like domain AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 Gene3D G3DSA:3.10.450.50 170 280 6.1E-11 T 19-04-2016 IPR032710 NTF2-like domain AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 Pfam PF08281 Sigma-70, region 4 108 159 5.4E-9 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 PANTHER PTHR30173 10 285 1.1E-114 T 19-04-2016 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 161 4.3E-14 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 Gene3D G3DSA:1.10.10.10 103 161 1.3E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8270 5d439345602f828c8bb10dcb3249c46f 338 PANTHER PTHR30173:SF11 10 285 1.1E-114 T 19-04-2016 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 Pfam PF01593 Flavin containing amine oxidoreductase 11 461 4.8E-44 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:3.90.660.20 229 412 2.2E-24 T 19-04-2016 IPR027418 Protoporphyrinogen oxidase, C-terminal domain KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 PANTHER PTHR10742 4 460 1.5E-72 T 19-04-2016 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 SUPERFAMILY SSF54373 302 412 1.29E-19 T 19-04-2016 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:3.40.50.720 2 45 2.9E-8 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:3.40.50.720 56 57 7.1E-7 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 2 464 3.7E-50 T 19-04-2016 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 PANTHER PTHR10742:SF262 4 460 1.5E-72 T 19-04-2016 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 Gene3D G3DSA:1.10.3110.10 114 198 4.3E-14 T 19-04-2016 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 SUPERFAMILY SSF51905 429 461 1.83E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2644 65a6e32bf15fd86fc54c05a3a55f0066 466 SUPERFAMILY SSF51905 2 317 1.83E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8843 40fcd7eeb19596f28ecb2ee2af323672 256 PANTHER PTHR23131 22 253 4.5E-58 T 19-04-2016 AMED_8843 40fcd7eeb19596f28ecb2ee2af323672 256 SUPERFAMILY SSF56281 23 253 1.31E-47 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8843 40fcd7eeb19596f28ecb2ee2af323672 256 SMART SM00849 31 182 6.0E-26 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8843 40fcd7eeb19596f28ecb2ee2af323672 256 Pfam PF00753 Metallo-beta-lactamase superfamily 29 182 8.7E-16 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8843 40fcd7eeb19596f28ecb2ee2af323672 256 Gene3D G3DSA:3.60.15.10 23 213 6.8E-43 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1753 933b1299cbde96b9573dbb587daf985e 717 SUPERFAMILY SSF52540 181 459 2.14E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1753 933b1299cbde96b9573dbb587daf985e 717 SUPERFAMILY SSF50249 13 176 1.16E-28 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1753 933b1299cbde96b9573dbb587daf985e 717 PANTHER PTHR24031:SF249 283 618 1.6E-97 T 19-04-2016 AMED_1753 933b1299cbde96b9573dbb587daf985e 717 PANTHER PTHR24031:SF249 642 692 1.6E-97 T 19-04-2016 AMED_1753 933b1299cbde96b9573dbb587daf985e 717 Gene3D G3DSA:3.40.50.300 252 461 2.8E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1753 933b1299cbde96b9573dbb587daf985e 717 Pfam PF00270 DEAD/DEAH box helicase 287 441 1.7E-17 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_1753 933b1299cbde96b9573dbb587daf985e 717 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 680 3.5E-207 T 19-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AMED_1753 933b1299cbde96b9573dbb587daf985e 717 PANTHER PTHR24031 283 618 1.6E-97 T 19-04-2016 AMED_1753 933b1299cbde96b9573dbb587daf985e 717 PANTHER PTHR24031 642 692 1.6E-97 T 19-04-2016 AMED_1753 933b1299cbde96b9573dbb587daf985e 717 Pfam PF00271 Helicase conserved C-terminal domain 488 604 2.4E-19 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1753 933b1299cbde96b9573dbb587daf985e 717 Pfam PF17191 RecG wedge domain 13 173 3.4E-17 T 19-04-2016 IPR033454 RecG, wedge domain AMED_1753 933b1299cbde96b9573dbb587daf985e 717 SUPERFAMILY SSF52540 395 615 6.48E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1753 933b1299cbde96b9573dbb587daf985e 717 SMART SM00490 520 605 9.5E-22 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1753 933b1299cbde96b9573dbb587daf985e 717 Gene3D G3DSA:2.40.50.140 44 139 4.2E-19 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1753 933b1299cbde96b9573dbb587daf985e 717 Gene3D G3DSA:3.40.50.300 472 653 4.1E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1753 933b1299cbde96b9573dbb587daf985e 717 SMART SM00487 261 465 3.5E-27 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 4.4E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.4E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.4E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 4.4E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 4.4E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 SUPERFAMILY SSF51735 4 238 5.55E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 1.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 Gene3D G3DSA:3.40.50.720 4 238 4.0E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 PANTHER PTHR24322 9 177 7.1E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1330 3b7f57e0f2c3374ab734e7ab9a0f236a 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 237 2.3E-35 T 19-04-2016 AMED_3915 1cea90fa79f5810302abc665b24cf376 273 SUPERFAMILY SSF161098 34 259 3.27E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3915 1cea90fa79f5810302abc665b24cf376 273 PANTHER PTHR30193 1 267 3.2E-82 T 19-04-2016 AMED_3915 1cea90fa79f5810302abc665b24cf376 273 Gene3D G3DSA:1.10.3720.10 40 266 3.9E-61 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3915 1cea90fa79f5810302abc665b24cf376 273 PANTHER PTHR30193:SF6 1 267 3.2E-82 T 19-04-2016 AMED_3915 1cea90fa79f5810302abc665b24cf376 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 265 2.9E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3837 20244a00b782774834d63562d93b40db 324 SUPERFAMILY SSF51412 3 315 1.96E-70 T 19-04-2016 AMED_3837 20244a00b782774834d63562d93b40db 324 Gene3D G3DSA:3.20.20.70 3 303 1.7E-75 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3837 20244a00b782774834d63562d93b40db 324 Pfam PF03060 Nitronate monooxygenase 5 308 1.9E-55 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_3837 20244a00b782774834d63562d93b40db 324 PANTHER PTHR32332 1 315 2.1E-193 T 19-04-2016 AMED_3837 20244a00b782774834d63562d93b40db 324 PANTHER PTHR32332:SF22 1 315 2.1E-193 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 TIGRFAM TIGR03383 urate_oxi: urate oxidase 5 280 3.6E-108 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 ProSitePatterns PS00366 Uricase signature. 148 175 - T 19-04-2016 IPR019842 Uricase, conserved site GO:0004846|GO:0006144|GO:0055114 KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PANTHER PTHR10395:SF15 1 160 1.0E-103 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PANTHER PTHR10395 196 284 1.0E-103 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 ProDom PD003367 URICASE OXIDOREDUCTASE URATE OXIDASE METABOLISM PURINE PEROXISOME ACETYLATION II DIRECT 178 280 3.0E-33 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PIRSF PIRSF000241 2 286 2.7E-102 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 SUPERFAMILY SSF55620 139 291 1.11E-59 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 86 99 3.9E-20 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 11 22 3.9E-20 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 50 64 3.9E-20 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 148 164 3.9E-20 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PRINTS PR00093 Uricase signature 164 176 3.9E-20 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PANTHER PTHR10395 1 160 1.0E-103 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 Gene3D G3DSA:3.10.270.10 3 285 3.0E-110 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 SUPERFAMILY SSF55620 5 134 2.09E-44 T 19-04-2016 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 Pfam PF01014 Uricase 143 275 1.5E-36 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 Pfam PF01014 Uricase 9 132 6.9E-19 T 19-04-2016 IPR002042 Uricase KEGG: 00230+1.7.3.3|KEGG: 00232+1.7.3.3|MetaCyc: PWY-5691|UniPathway: UPA00394 AMED_1926 5320c10a4c8484c48ebcb94a7513e72e 293 PANTHER PTHR10395:SF15 196 284 1.0E-103 T 19-04-2016 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 SUPERFAMILY SSF54373 296 478 4.02E-59 T 19-04-2016 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 Pfam PF05199 GMC oxidoreductase 394 529 6.9E-38 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 SUPERFAMILY SSF51905 2 294 1.05E-86 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 SUPERFAMILY SSF51905 477 537 1.05E-86 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 PANTHER PTHR11552:SF51 4 548 2.3E-229 T 19-04-2016 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 Pfam PF00732 GMC oxidoreductase 6 301 4.5E-89 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 TIGRFAM TIGR01810 betA: choline dehydrogenase 7 539 2.2E-257 T 19-04-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 PIRSF PIRSF000137 1 540 8.8E-148 T 19-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 85 108 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:3.50.50.60 3 130 3.9E-120 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:3.50.50.60 193 319 3.9E-120 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 Gene3D G3DSA:3.50.50.60 471 536 3.9E-120 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 PANTHER PTHR11552 4 548 2.3E-229 T 19-04-2016 AMED_7560 c0cbe21754d8c81ad1a046629486feb6 552 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 260 274 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 202 339 7.0E-16 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 SUPERFAMILY SSF53756 2 364 5.34E-70 T 19-04-2016 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 201 351 1.0E-32 T 19-04-2016 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 PANTHER PTHR11926 1 366 1.5E-29 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 PANTHER PTHR11926:SF16 1 366 1.5E-29 T 19-04-2016 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 Gene3D G3DSA:3.40.50.2000 203 350 4.7E-33 T 19-04-2016 AMED_9101 d14cd34363cd3fb2451bfe2e44975e04 372 Gene3D G3DSA:3.40.50.2000 2 142 1.3E-14 T 19-04-2016 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 PANTHER PTHR24220:SF442 7 292 6.2E-150 T 19-04-2016 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 266 0.0044 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 532 564 0.0044 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 Gene3D G3DSA:3.40.50.300 306 554 2.0E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 Gene3D G3DSA:3.40.50.300 5 256 2.5E-73 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 SUPERFAMILY SSF52540 308 552 3.03E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 PANTHER PTHR24220:SF442 329 439 6.2E-150 T 19-04-2016 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 SMART SM00382 34 232 1.7E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 SMART SM00382 338 530 5.3E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 SUPERFAMILY SSF52540 5 254 8.37E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 Pfam PF00005 ABC transporter 26 182 6.9E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 Pfam PF00005 ABC transporter 330 481 2.4E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 PANTHER PTHR24220 329 439 6.2E-150 T 19-04-2016 AMED_8024 51ed39a8f9b7e681d905fccdded10568 581 PANTHER PTHR24220 7 292 6.2E-150 T 19-04-2016 AMED_6349 af56560a108ae3480a3f3426da65ff25 411 PANTHER PTHR24421 77 410 6.0E-74 T 19-04-2016 AMED_6349 af56560a108ae3480a3f3426da65ff25 411 PANTHER PTHR24421:SF26 77 410 6.0E-74 T 19-04-2016 AMED_6349 af56560a108ae3480a3f3426da65ff25 411 Gene3D G3DSA:3.30.565.10 303 398 3.2E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6349 af56560a108ae3480a3f3426da65ff25 411 Pfam PF07730 Histidine kinase 193 256 1.2E-11 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6349 af56560a108ae3480a3f3426da65ff25 411 SUPERFAMILY SSF55874 277 393 3.61E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7362 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 SUPERFAMILY SSF161098 46 312 4.84E-32 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7362 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 30 320 1.0E-73 T 19-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMED_7362 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 PANTHER PTHR30425:SF1 15 328 4.1E-85 T 19-04-2016 AMED_7362 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 PANTHER PTHR30425 15 328 4.1E-85 T 19-04-2016 AMED_7362 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 Gene3D G3DSA:1.10.3720.10 41 322 5.4E-36 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7362 aebfa35f1a71ce33ca7ed7d8d8f87de8 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 320 4.4E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 Gene3D G3DSA:3.40.50.300 726 942 1.1E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 Pfam PF13604 AAA domain 734 886 1.9E-12 T 19-04-2016 AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 Gene3D G3DSA:3.40.50.300 970 1084 5.8E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 TIGRFAM TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family 6 474 1.7E-45 T 19-04-2016 IPR019993 RecB family nuclease, TM0106, putative AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 SUPERFAMILY SSF52540 820 1088 3.68E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 SUPERFAMILY SSF52540 727 786 3.68E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 SMART SM00382 733 1074 3.2E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 PANTHER PTHR10887:SF350 735 1082 5.6E-55 T 19-04-2016 AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 Pfam PF13087 AAA domain 912 1085 9.2E-22 T 19-04-2016 AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 Pfam PF13482 RNase_H superfamily 308 474 2.4E-10 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_4119 a05b30291b5ec2219935da4e6ebe0f35 1131 PANTHER PTHR10887 735 1082 5.6E-55 T 19-04-2016 AMED_7089 5e02a28f9525706507e1b44ee614ac3c 897 SUPERFAMILY SSF48452 752 891 7.96E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7089 5e02a28f9525706507e1b44ee614ac3c 897 Pfam PF03704 Bacterial transcriptional activator domain 752 893 9.4E-8 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_7089 5e02a28f9525706507e1b44ee614ac3c 897 SMART SM00257 212 268 0.11 T 19-04-2016 IPR018392 LysM domain AMED_7089 5e02a28f9525706507e1b44ee614ac3c 897 SMART SM00257 147 203 0.81 T 19-04-2016 IPR018392 LysM domain AMED_7089 5e02a28f9525706507e1b44ee614ac3c 897 SMART SM01043 752 894 1.7E-14 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 SUPERFAMILY SSF51735 1 154 4.06E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 PANTHER PTHR22604:SF120 1 333 1.2E-98 T 19-04-2016 AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 Gene3D G3DSA:3.40.50.720 1 140 1.3E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 SUPERFAMILY SSF55347 128 294 8.18E-30 T 19-04-2016 AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 Gene3D G3DSA:3.30.360.10 141 330 2.2E-41 T 19-04-2016 AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 PANTHER PTHR22604 1 333 1.2E-98 T 19-04-2016 AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 131 235 1.6E-12 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_1676 d5ce1507ccdf0c94d4128cc33aebc04b 356 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 110 5.8E-22 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_3843 49ee967f236cbacad4b95dab2b18a19f 456 Gene3D G3DSA:3.30.1330.120 269 386 3.0E-22 T 19-04-2016 AMED_3843 49ee967f236cbacad4b95dab2b18a19f 456 PANTHER PTHR16943:SF8 6 456 2.8E-94 T 19-04-2016 AMED_3843 49ee967f236cbacad4b95dab2b18a19f 456 Pfam PF03972 MmgE/PrpD family 8 438 5.9E-117 T 19-04-2016 IPR005656 MmgE/PrpD GO:0016829 AMED_3843 49ee967f236cbacad4b95dab2b18a19f 456 SUPERFAMILY SSF103378 7 442 3.01E-105 T 19-04-2016 IPR005656 MmgE/PrpD GO:0016829 AMED_3843 49ee967f236cbacad4b95dab2b18a19f 456 PANTHER PTHR16943 6 456 2.8E-94 T 19-04-2016 IPR005656 MmgE/PrpD GO:0016829 AMED_2010 703d258df0060e51d28d32bfa1a60309 94 PANTHER PTHR38031 1 94 8.6E-15 T 19-04-2016 AMED_2010 703d258df0060e51d28d32bfa1a60309 94 Pfam PF02597 ThiS family 5 94 7.4E-17 T 19-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 AMED_2010 703d258df0060e51d28d32bfa1a60309 94 SUPERFAMILY SSF54285 2 94 2.24E-19 T 19-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMED_2010 703d258df0060e51d28d32bfa1a60309 94 Gene3D G3DSA:3.10.20.30 3 92 8.0E-24 T 19-04-2016 IPR012675 Beta-grasp domain AMED_2010 703d258df0060e51d28d32bfa1a60309 94 PANTHER PTHR38031:SF1 1 94 8.6E-15 T 19-04-2016 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 611 4.4E-236 T 19-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 PANTHER PTHR21000 408 614 0.0 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 PANTHER PTHR21000 4 372 0.0 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 511 522 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 SUPERFAMILY SSF143975 4 422 1.1E-131 T 19-04-2016 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 SUPERFAMILY SSF52016 423 612 1.65E-59 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 Pfam PF00920 Dehydratase family 34 608 7.1E-213 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 611 44.767 T 19-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 PANTHER PTHR21000:SF11 408 614 0.0 T 19-04-2016 AMED_1683 47524ef3e44fd225b70d5419ff7a791f 614 PANTHER PTHR21000:SF11 4 372 0.0 T 19-04-2016 AMED_7764 8d13cbd23362842281255bd8fe37fa8a 208 Pfam PF01810 LysE type translocator 16 207 1.8E-38 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7764 8d13cbd23362842281255bd8fe37fa8a 208 PANTHER PTHR30086:SF2 1 207 4.4E-60 T 19-04-2016 AMED_7764 8d13cbd23362842281255bd8fe37fa8a 208 PIRSF PIRSF006324 1 208 2.8E-56 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7764 8d13cbd23362842281255bd8fe37fa8a 208 PANTHER PTHR30086 1 207 4.4E-60 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 SUPERFAMILY SSF54292 3 79 4.19E-24 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 Gene3D G3DSA:1.10.150.120 80 160 1.7E-24 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 PANTHER PTHR11908 3 159 3.3E-31 T 19-04-2016 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 Gene3D G3DSA:3.10.20.30 3 77 6.8E-30 T 19-04-2016 IPR012675 Beta-grasp domain AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 Pfam PF01799 [2Fe-2S] binding domain 74 157 5.6E-26 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 54 6.2E-7 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 PANTHER PTHR11908:SF66 3 159 3.3E-31 T 19-04-2016 AMED_3643 aadccb8afe747ac18b6996f11156b1ea 162 SUPERFAMILY SSF47741 74 161 1.44E-24 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_0260 2dadb6c2cd914c82ce182ac5b872b901 236 SUPERFAMILY SSF49899 47 214 4.04E-27 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_0260 2dadb6c2cd914c82ce182ac5b872b901 236 Pfam PF01828 Peptidase A4 family 48 206 2.6E-26 T 19-04-2016 IPR000250 Peptidase G1 GO:0004190|GO:0006508 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 PANTHER PTHR10357 610 721 0.0 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 679 0.0 T 19-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 PANTHER PTHR10357 4 582 0.0 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF51011 593 719 7.91E-21 T 19-04-2016 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 Gene3D G3DSA:2.60.40.10 5 151 9.9E-55 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 Gene3D G3DSA:3.20.20.80 152 579 4.6E-123 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 SMART SM00642 138 571 2.9E-8 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF81296 5 147 9.24E-42 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 PANTHER PTHR10357:SF74 610 721 0.0 T 19-04-2016 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 PANTHER PTHR10357:SF74 4 582 0.0 T 19-04-2016 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 Pfam PF00128 Alpha amylase, catalytic domain 293 534 1.4E-6 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 Pfam PF00128 Alpha amylase, catalytic domain 188 280 1.1E-8 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 96 3.1E-15 T 19-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF51445 133 474 2.46E-133 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 SUPERFAMILY SSF51445 503 579 2.46E-133 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3060 44a726fb21e2e9da097c129ee24d8eb2 727 Gene3D G3DSA:2.60.40.1180 592 721 9.4E-30 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_6267 0b798721715e189ceeaf362b0762e049 317 Gene3D G3DSA:3.40.50.300 23 185 1.4E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6267 0b798721715e189ceeaf362b0762e049 317 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 40 169 3.0E-63 T 19-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMED_6267 0b798721715e189ceeaf362b0762e049 317 Gene3D G3DSA:1.10.8.300 203 309 1.2E-33 T 19-04-2016 AMED_6267 0b798721715e189ceeaf362b0762e049 317 SUPERFAMILY SSF52540 9 284 1.79E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6267 0b798721715e189ceeaf362b0762e049 317 PIRSF PIRSF002849 2 314 9.4E-131 T 19-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted AMED_6267 0b798721715e189ceeaf362b0762e049 317 PANTHER PTHR11603 3 312 9.4E-127 T 19-04-2016 AMED_3092 fee19901bb4bd6844ee11e42e353611a 285 PANTHER PTHR11732:SF241 1 278 4.7E-89 T 19-04-2016 AMED_3092 fee19901bb4bd6844ee11e42e353611a 285 SUPERFAMILY SSF51430 4 281 2.62E-62 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_3092 fee19901bb4bd6844ee11e42e353611a 285 PANTHER PTHR11732 1 278 4.7E-89 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_3092 fee19901bb4bd6844ee11e42e353611a 285 Pfam PF00248 Aldo/keto reductase family 4 277 7.8E-48 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_3092 fee19901bb4bd6844ee11e42e353611a 285 Gene3D G3DSA:3.20.20.100 3 280 1.4E-55 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5730 ae5bed9d101534b23e812a132302fb59 186 Gene3D G3DSA:1.20.1260.10 54 157 5.6E-4 T 19-04-2016 IPR012347 Ferritin-related AMED_5730 ae5bed9d101534b23e812a132302fb59 186 Pfam PF13628 Domain of unknown function (DUF4142) 40 171 1.7E-17 T 19-04-2016 IPR025419 Domain of unknown function DUF4142 AMED_5721 3c7558cd64d90e6e396b4cad5b5c81a7 229 Pfam PF14342 Domain of unknown function (DUF4396) 84 226 4.7E-44 T 19-04-2016 IPR025509 Domain of unknown function DUF4396 AMED_1995 4fc6d6c9811635a26740e02a30622f36 289 Gene3D G3DSA:1.10.3720.10 86 280 1.7E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1995 4fc6d6c9811635a26740e02a30622f36 289 SUPERFAMILY SSF161098 86 269 4.32E-21 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1995 4fc6d6c9811635a26740e02a30622f36 289 PANTHER PTHR30151 58 288 4.0E-51 T 19-04-2016 AMED_1995 4fc6d6c9811635a26740e02a30622f36 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 278 9.1E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1995 4fc6d6c9811635a26740e02a30622f36 289 PANTHER PTHR30151:SF9 58 288 4.0E-51 T 19-04-2016 AMED_3957 e34ef61d522ea51a11ebbb30a76a5ade 398 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 127 5.5E-11 T 19-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_3957 e34ef61d522ea51a11ebbb30a76a5ade 398 SUPERFAMILY SSF53756 3 397 1.77E-79 T 19-04-2016 AMED_3957 e34ef61d522ea51a11ebbb30a76a5ade 398 PANTHER PTHR11926:SF394 1 384 1.0E-30 T 19-04-2016 AMED_3957 e34ef61d522ea51a11ebbb30a76a5ade 398 Gene3D G3DSA:3.40.50.2000 238 379 3.0E-45 T 19-04-2016 AMED_3957 e34ef61d522ea51a11ebbb30a76a5ade 398 Gene3D G3DSA:3.40.50.2000 2 237 9.0E-55 T 19-04-2016 AMED_3957 e34ef61d522ea51a11ebbb30a76a5ade 398 PANTHER PTHR11926 1 384 1.0E-30 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 360 369 - T 19-04-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:2.60.40.10 548 640 2.2E-20 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Pfam PF00041 Fibronectin type III domain 552 628 1.2E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:3.20.20.80 243 539 8.3E-74 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:2.60.40.290 649 753 8.2E-33 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Gene3D G3DSA:3.40.50.1110 29 229 8.1E-31 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7413 524752aecf65ef447b36b1db8921c05c 755 SMART SM00637 650 752 5.1E-36 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 252 499 1.2E-38 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF51445 242 538 3.51E-78 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 36 214 3.6E-16 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7413 524752aecf65ef447b36b1db8921c05c 755 PANTHER PTHR32438:SF10 240 531 1.3E-101 T 19-04-2016 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 PANTHER PTHR32438 240 531 1.3E-101 T 19-04-2016 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF52266 26 229 3.82E-31 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7413 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF49265 547 644 1.43E-16 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 SUPERFAMILY SSF49384 646 753 1.46E-26 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 Pfam PF00553 Cellulose binding domain 650 752 2.6E-25 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7413 524752aecf65ef447b36b1db8921c05c 755 SMART SM00060 550 630 9.7E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 PANTHER PTHR10992:SF863 404 515 5.7E-40 T 19-04-2016 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 SUPERFAMILY SSF53474 197 251 7.03E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 SUPERFAMILY SSF53474 374 500 7.03E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 SUPERFAMILY SSF53474 99 150 7.03E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 PANTHER PTHR10992 26 148 5.7E-40 T 19-04-2016 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 PANTHER PTHR10992 404 515 5.7E-40 T 19-04-2016 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 PANTHER PTHR10992 197 290 5.7E-40 T 19-04-2016 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Pfam PF08386 TAP-like protein 424 522 8.1E-17 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Gene3D G3DSA:3.40.50.1820 195 320 2.3E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Gene3D G3DSA:3.40.50.1820 392 512 2.3E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Gene3D G3DSA:3.40.50.1820 64 149 2.3E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 Pfam PF00561 alpha/beta hydrolase fold 100 262 1.2E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 PANTHER PTHR10992:SF863 26 148 5.7E-40 T 19-04-2016 AMED_4959 df4bc6ef8c3e0b3d62d1a9b2408bb8f5 534 PANTHER PTHR10992:SF863 197 290 5.7E-40 T 19-04-2016 AMED_5732 da1704795f0020cec9974c1232b35280 585 PANTHER PTHR11689 28 515 1.3E-120 T 19-04-2016 AMED_5732 da1704795f0020cec9974c1232b35280 585 Gene3D G3DSA:1.10.3080.10 23 453 2.5E-102 T 19-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 Pfam PF00571 CBS domain 533 577 0.0027 T 19-04-2016 IPR000644 CBS domain AMED_5732 da1704795f0020cec9974c1232b35280 585 SUPERFAMILY SSF81340 16 447 6.41E-116 T 19-04-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 179 198 5.4E-25 T 19-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 396 415 5.4E-25 T 19-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 378 394 5.4E-25 T 19-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 343 363 5.4E-25 T 19-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 PRINTS PR00762 Chloride channel signature 99 116 5.4E-25 T 19-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 SUPERFAMILY SSF54631 471 577 9.82E-15 T 19-04-2016 AMED_5732 da1704795f0020cec9974c1232b35280 585 Gene3D G3DSA:3.10.580.10 461 577 2.2E-16 T 19-04-2016 AMED_5732 da1704795f0020cec9974c1232b35280 585 Pfam PF00654 Voltage gated chloride channel 86 428 4.2E-99 T 19-04-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 AMED_5732 da1704795f0020cec9974c1232b35280 585 PANTHER PTHR11689:SF14 28 515 1.3E-120 T 19-04-2016 AMED_8103 76e7a5a7f407931b2307d4740b5d612c 157 PANTHER PTHR35176 18 151 1.4E-16 T 19-04-2016 AMED_8103 76e7a5a7f407931b2307d4740b5d612c 157 PANTHER PTHR35176:SF2 18 151 1.4E-16 T 19-04-2016 AMED_8103 76e7a5a7f407931b2307d4740b5d612c 157 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 23 151 3.4E-25 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_8103 76e7a5a7f407931b2307d4740b5d612c 157 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 98 1.1E-11 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8103 76e7a5a7f407931b2307d4740b5d612c 157 SUPERFAMILY SSF50475 21 151 1.62E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8103 76e7a5a7f407931b2307d4740b5d612c 157 Gene3D G3DSA:2.30.110.10 18 151 1.8E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6694 8d1cef41fbd5653c1f02cb36af34286d 131 SUPERFAMILY SSF81301 7 117 3.11E-38 T 19-04-2016 AMED_6694 8d1cef41fbd5653c1f02cb36af34286d 131 Pfam PF02410 Ribosomal silencing factor during starvation 14 108 1.2E-23 T 19-04-2016 AMED_6694 8d1cef41fbd5653c1f02cb36af34286d 131 Gene3D G3DSA:3.30.460.10 7 112 1.8E-35 T 19-04-2016 AMED_6694 8d1cef41fbd5653c1f02cb36af34286d 131 PANTHER PTHR21043 6 131 6.9E-35 T 19-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMED_6694 8d1cef41fbd5653c1f02cb36af34286d 131 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 14 108 4.1E-32 T 19-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMED_6694 8d1cef41fbd5653c1f02cb36af34286d 131 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 7 109 23.335 T 19-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMED_5846 4e04d401953257d9347dd75226e27d9a 428 SUPERFAMILY SSF53850 24 414 4.51E-34 T 19-04-2016 AMED_5846 4e04d401953257d9347dd75226e27d9a 428 PANTHER PTHR30061 27 412 5.7E-46 T 19-04-2016 AMED_5846 4e04d401953257d9347dd75226e27d9a 428 PANTHER PTHR30061:SF2 27 412 5.7E-46 T 19-04-2016 AMED_5846 4e04d401953257d9347dd75226e27d9a 428 Gene3D G3DSA:3.40.190.10 2 132 2.0E-14 T 19-04-2016 AMED_5846 4e04d401953257d9347dd75226e27d9a 428 Gene3D G3DSA:3.40.190.10 324 358 2.0E-14 T 19-04-2016 AMED_5846 4e04d401953257d9347dd75226e27d9a 428 Pfam PF01547 Bacterial extracellular solute-binding protein 38 334 1.2E-14 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_5846 4e04d401953257d9347dd75226e27d9a 428 Gene3D G3DSA:3.40.190.10 140 323 1.3E-12 T 19-04-2016 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 609 737 4.4E-58 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 363 452 4.4E-58 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 290 329 2.8E-11 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 133 182 2.8E-11 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 164 682 4.7E-128 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.90.1170.50 5 132 1.3E-33 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3641 d83f252650308c25ee3392b1a08376ec 738 PANTHER PTHR11908 580 738 8.7E-260 T 19-04-2016 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 PANTHER PTHR11908 13 564 8.7E-260 T 19-04-2016 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 28 142 1.3E-18 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3641 d83f252650308c25ee3392b1a08376ec 738 SUPERFAMILY SSF54665 10 154 7.46E-34 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 456 608 5.2E-28 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 SUPERFAMILY SSF56003 136 738 2.75E-163 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 SMART SM01008 28 144 1.1E-31 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3641 d83f252650308c25ee3392b1a08376ec 738 PANTHER PTHR11908:SF71 580 738 8.7E-260 T 19-04-2016 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 PANTHER PTHR11908:SF71 13 564 8.7E-260 T 19-04-2016 AMED_3641 d83f252650308c25ee3392b1a08376ec 738 Gene3D G3DSA:3.30.365.10 183 282 1.5E-36 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 SMART SM00344 15 119 1.1E-28 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 Gene3D G3DSA:3.30.70.920 78 149 1.0E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 Gene3D G3DSA:1.10.10.10 14 62 1.8E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 PANTHER PTHR30154 15 160 3.9E-36 T 19-04-2016 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 PANTHER PTHR30154:SF2 15 160 3.9E-36 T 19-04-2016 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 SUPERFAMILY SSF54909 77 157 8.04E-12 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 Pfam PF01037 Lrp/AsnC ligand binding domain 81 149 2.1E-12 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 Pfam PF13404 AsnC-type helix-turn-helix domain 15 55 1.2E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 SUPERFAMILY SSF46785 14 62 3.05E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 15 31 4.1E-13 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 42 61 4.1E-13 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4236 f596b6eaf82fb0db2f569411a3683a0f 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 42 4.1E-13 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4592 023e21d967feba4fe2485b407f0455eb 289 SUPERFAMILY SSF111331 73 202 8.17E-19 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_4592 023e21d967feba4fe2485b407f0455eb 289 Gene3D G3DSA:3.40.50.10330 77 155 2.0E-7 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4592 023e21d967feba4fe2485b407f0455eb 289 Pfam PF01513 ATP-NAD kinase 70 198 1.3E-6 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4592 023e21d967feba4fe2485b407f0455eb 289 Gene3D G3DSA:2.60.200.30 156 201 6.7E-9 T 19-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 SUPERFAMILY SSF46785 1 110 8.18E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 Gene3D G3DSA:3.40.190.10 175 246 2.3E-29 T 19-04-2016 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 PANTHER PTHR30346 1 287 2.3E-76 T 19-04-2016 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 Gene3D G3DSA:1.10.10.10 1 84 1.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.3E-15 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 Gene3D G3DSA:3.40.190.10 90 174 2.0E-17 T 19-04-2016 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 PANTHER PTHR30346:SF8 1 287 2.3E-76 T 19-04-2016 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 Pfam PF03466 LysR substrate binding domain 89 287 1.3E-43 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4529 51349e057a527d7406b5e413fcac5ab9 300 SUPERFAMILY SSF53850 90 291 5.57E-39 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 SUPERFAMILY SSF53697 12 361 1.81E-43 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 Pfam PF01380 SIS domain 46 179 8.8E-17 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 PANTHER PTHR32502 11 174 7.2E-119 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 PANTHER PTHR32502 219 375 7.2E-119 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 Gene3D G3DSA:3.40.50.10490 9 181 4.6E-55 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 PANTHER PTHR32502:SF3 11 174 7.2E-119 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 PANTHER PTHR32502:SF3 219 375 7.2E-119 T 19-04-2016 AMED_3919 54245d0b57281f72731aa0cfc19f712b 376 Gene3D G3DSA:3.40.50.10490 189 364 7.4E-42 T 19-04-2016 AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 PANTHER PTHR11731:SF134 30 297 5.9E-30 T 19-04-2016 AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 PANTHER PTHR11731 30 297 5.9E-30 T 19-04-2016 AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 SUPERFAMILY SSF53474 133 361 2.87E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 SUPERFAMILY SSF53474 22 131 2.81E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 Gene3D G3DSA:3.40.50.1820 12 299 2.3E-45 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 Pfam PF10503 Esterase PHB depolymerase 46 251 3.9E-41 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_5948 8e67d659ab45a95fd2fcc1534886f0d3 400 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 47 257 1.0E-65 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_7219 a47966faddf710eecb6116ce297b06ec 132 Gene3D G3DSA:3.10.450.50 13 129 2.0E-25 T 19-04-2016 IPR032710 NTF2-like domain AMED_7219 a47966faddf710eecb6116ce297b06ec 132 Pfam PF13577 SnoaL-like domain 13 127 1.5E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_7219 a47966faddf710eecb6116ce297b06ec 132 SUPERFAMILY SSF54427 13 130 4.49E-25 T 19-04-2016 IPR032710 NTF2-like domain AMED_4952 ec99acc4161673a44bb710c3f8b91092 181 PANTHER PTHR19136:SF81 2 181 6.9E-14 T 19-04-2016 AMED_4952 ec99acc4161673a44bb710c3f8b91092 181 SUPERFAMILY SSF53448 3 178 1.32E-26 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4952 ec99acc4161673a44bb710c3f8b91092 181 Gene3D G3DSA:3.90.550.10 3 180 1.5E-34 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4952 ec99acc4161673a44bb710c3f8b91092 181 Pfam PF12804 MobA-like NTP transferase domain 5 154 1.1E-24 T 19-04-2016 IPR025877 MobA-like NTP transferase AMED_4952 ec99acc4161673a44bb710c3f8b91092 181 PANTHER PTHR19136 2 181 6.9E-14 T 19-04-2016 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 Pfam PF00067 Cytochrome P450 270 365 4.2E-19 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 336 345 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 151 166 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 87 98 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 269 280 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 287 314 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 345 356 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 188 210 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 315 330 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00359 B-class P450 signature 134 150 8.1E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 269 280 3.5E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 345 356 3.5E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 336 345 3.5E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PRINTS PR00385 P450 superfamily signature 234 251 3.5E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 Gene3D G3DSA:1.10.630.10 7 396 4.9E-121 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 PANTHER PTHR11712 17 396 1.7E-85 T 19-04-2016 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 338 347 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0875 3021ab70006e19dfbf6404e0e780594d 396 SUPERFAMILY SSF48264 8 396 2.62E-93 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 4 391 8.3E-64 T 19-04-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:1.10.441.10 142 240 5.2E-19 T 19-04-2016 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:1.10.441.10 283 296 5.2E-19 T 19-04-2016 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:2.60.120.10 6 141 3.1E-54 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8012 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:2.60.120.10 247 282 3.1E-54 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8012 dd57015387b60811c0396d946d6dc29b 409 Gene3D G3DSA:2.60.120.10 297 404 4.2E-14 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8012 dd57015387b60811c0396d946d6dc29b 409 Pfam PF01238 Phosphomannose isomerase type I 4 365 9.6E-61 T 19-04-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PANTHER PTHR10309:SF0 1 403 2.8E-108 T 19-04-2016 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 82 103 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 229 244 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 264 283 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 283 302 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 127 150 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 245 264 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 5.8E-58 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PANTHER PTHR10309 1 403 2.8E-108 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 PIRSF PIRSF001480 1 408 2.4E-92 T 19-04-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 AMED_8012 dd57015387b60811c0396d946d6dc29b 409 SUPERFAMILY SSF51182 3 385 5.0E-90 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.1E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.1E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.1E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PANTHER PTHR24322:SF242 153 184 5.0E-46 T 19-04-2016 AMED_3705 99563540be09d1239d8524a25762387c 259 PANTHER PTHR24322:SF242 11 137 5.0E-46 T 19-04-2016 AMED_3705 99563540be09d1239d8524a25762387c 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 248 4.6E-55 T 19-04-2016 AMED_3705 99563540be09d1239d8524a25762387c 259 Gene3D G3DSA:3.40.50.720 2 250 4.8E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3705 99563540be09d1239d8524a25762387c 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3705 99563540be09d1239d8524a25762387c 259 PANTHER PTHR24322 153 184 5.0E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 PANTHER PTHR24322 11 137 5.0E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3705 99563540be09d1239d8524a25762387c 259 SUPERFAMILY SSF51735 1 250 1.77E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 PANTHER PTHR11699 4 487 1.8E-247 T 19-04-2016 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 SUPERFAMILY SSF53720 3 480 7.72E-165 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 Gene3D G3DSA:3.40.309.10 262 441 2.9E-64 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 Pfam PF00171 Aldehyde dehydrogenase family 10 475 8.2E-166 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 Gene3D G3DSA:3.40.605.10 3 261 9.7E-95 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_2617 6a9cc1012ab25a1b3c14567ad98b9d79 489 PANTHER PTHR11699:SF164 4 487 1.8E-247 T 19-04-2016 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PIRSF PIRSF000171 1 574 5.6E-48 T 19-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 4 584 1.1E-288 T 19-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:3.50.50.60 351 423 2.2E-114 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:3.50.50.60 3 243 2.2E-114 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Pfam PF02910 Fumarate reductase flavoprotein C-term 455 584 8.4E-46 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF46977 447 584 6.67E-49 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:1.20.58.100 428 543 6.7E-39 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 379 386 1.1E-5 T 19-04-2016 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.1E-5 T 19-04-2016 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 584 3.6E-250 T 19-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF56425 237 355 1.26E-42 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Pfam PF00890 FAD binding domain 7 401 6.6E-112 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:3.90.700.10 244 349 2.0E-41 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PANTHER PTHR11632:SF5 4 584 0.0 T 19-04-2016 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF51905 2 260 7.63E-73 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 SUPERFAMILY SSF51905 359 426 7.63E-73 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 PANTHER PTHR11632 4 584 0.0 T 19-04-2016 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 Gene3D G3DSA:4.10.80.40 544 580 2.7E-17 T 19-04-2016 AMED_0850 3d0f9a95cdc5416f6cdb8c81ee4743dc 584 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 40 49 - T 19-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 AMED_6344 1785f044d4b254d14fa37ac99692b059 337 PANTHER PTHR11601:SF31 14 333 3.4E-38 T 19-04-2016 AMED_6344 1785f044d4b254d14fa37ac99692b059 337 SUPERFAMILY SSF53383 14 336 2.72E-43 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6344 1785f044d4b254d14fa37ac99692b059 337 PANTHER PTHR11601 14 333 3.4E-38 T 19-04-2016 AMED_6344 1785f044d4b254d14fa37ac99692b059 337 Pfam PF00266 Aminotransferase class-V 47 284 1.5E-11 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_6344 1785f044d4b254d14fa37ac99692b059 337 Gene3D G3DSA:3.40.640.10 25 260 6.5E-30 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Pfam PF03422 Carbohydrate binding module (family 6) 419 547 1.2E-35 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 PANTHER PTHR38165 32 404 5.0E-117 T 19-04-2016 AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 SMART SM00606 411 547 3.8E-46 T 19-04-2016 IPR006584 Cellulose binding, type IV GO:0030246 AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Gene3D G3DSA:2.60.120.260 413 546 2.1E-40 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 PANTHER PTHR38165:SF1 32 404 5.0E-117 T 19-04-2016 AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 Pfam PF16483 Beta-1,3-glucanase 35 396 3.0E-112 T 19-04-2016 IPR032477 Beta-1,3-glucanase, N-terminal KEGG: 00500+3.2.1.39 AMED_3478 960e77d0dc83cfcfae0cda3b2cf76c0d 547 SUPERFAMILY SSF49785 411 547 4.08E-32 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 PANTHER PTHR12526 1 379 5.9E-179 T 19-04-2016 AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 PANTHER PTHR12526:SF355 1 379 5.9E-179 T 19-04-2016 AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 Gene3D G3DSA:3.40.50.2000 160 359 4.4E-49 T 19-04-2016 AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 SUPERFAMILY SSF53756 1 378 1.22E-85 T 19-04-2016 AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 TIGRFAM TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family 1 378 2.2E-173 T 19-04-2016 IPR011875 Glycogen synthase, corynebacterial KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00934 AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 Pfam PF00534 Glycosyl transferases group 1 186 358 1.1E-31 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_4464 1bce525b08f9165fa9fb15cb0e553f88 384 Pfam PF13439 Glycosyltransferase Family 4 15 174 1.4E-29 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_1987 ccec4c898373e857aba48d835320bbe7 368 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 17 368 65.333 T 19-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 PANTHER PTHR30544:SF5 16 367 6.1E-158 T 19-04-2016 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 PIRSF PIRSF006004 12 368 1.2E-118 T 19-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 PANTHER PTHR30544 16 367 6.1E-158 T 19-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 Pfam PF04055 Radical SAM superfamily 122 295 7.6E-22 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 20 366 2.2E-97 T 19-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 SUPERFAMILY SSF102114 112 340 5.1E-18 T 19-04-2016 AMED_1987 ccec4c898373e857aba48d835320bbe7 368 Gene3D G3DSA:3.20.20.70 118 339 4.1E-18 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4122 5704189515dd980957ded2a45f15d7a0 285 PANTHER PTHR40761 1 281 1.6E-27 T 19-04-2016 AMED_4122 5704189515dd980957ded2a45f15d7a0 285 PANTHER PTHR40761:SF1 1 281 1.6E-27 T 19-04-2016 AMED_9115 37add5a53e6ad496d38a39148bf26a9b 173 Pfam PF10118 Predicted metal-dependent hydrolase 19 153 1.2E-40 T 19-04-2016 IPR016516 Uncharacterised conserved protein UCP07580 AMED_9115 37add5a53e6ad496d38a39148bf26a9b 173 PANTHER PTHR39456 22 172 4.6E-73 T 19-04-2016 AMED_9115 37add5a53e6ad496d38a39148bf26a9b 173 PANTHER PTHR39456:SF1 22 172 4.6E-73 T 19-04-2016 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 Gene3D G3DSA:3.40.47.10 4 127 8.6E-50 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 Gene3D G3DSA:3.40.47.10 188 269 8.6E-50 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 Pfam PF02803 Thiolase, C-terminal domain 267 388 2.7E-36 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 PANTHER PTHR18919 1 391 1.9E-154 T 19-04-2016 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 388 3.4E-124 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 ProSitePatterns PS00737 Thiolases signature 2. 335 351 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 PANTHER PTHR18919:SF69 1 391 1.9E-154 T 19-04-2016 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 SUPERFAMILY SSF53901 4 264 5.21E-58 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 Gene3D G3DSA:3.40.47.10 271 389 1.1E-49 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 Gene3D G3DSA:3.40.47.10 147 187 1.1E-49 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 PIRSF PIRSF000429 1 391 9.6E-120 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 Pfam PF00108 Thiolase, N-terminal domain 4 256 4.9E-55 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_2631 b787d33ecc492a007ec94a484e09b029 396 SUPERFAMILY SSF53901 268 388 8.14E-38 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_8348 9baf8e68c2124834b39df01a025c7175 339 PANTHER PTHR40277 4 308 2.2E-38 T 19-04-2016 AMED_8348 9baf8e68c2124834b39df01a025c7175 339 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 7 296 1.9E-27 T 19-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:1.25.40.10 1097 1204 1.1E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:1.25.40.10 851 1036 1.1E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF48452 1063 1083 7.59E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF48452 1123 1237 7.59E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF52540 1 222 1.52E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 SUPERFAMILY SSF52540 434 630 9.35E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 Gene3D G3DSA:3.40.50.300 2 178 4.9E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8162 2718dee1ce544dce493ba09fb65424e6 1247 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 195 3.0E-9 T 19-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 SMART SM00421 921 978 1.6E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 Pfam PF00196 Bacterial regulatory proteins, luxR family 923 978 6.8E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF52540 125 380 5.34E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:1.10.10.10 917 979 5.7E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 954 966 2.1E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 938 954 2.1E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 924 938 2.1E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF55073 18 119 3.3E-10 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF48452 612 795 9.36E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00364 Disease resistance protein signature 154 169 4.8E-5 T 19-04-2016 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00364 Disease resistance protein signature 312 326 4.8E-5 T 19-04-2016 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 PRINTS PR00364 Disease resistance protein signature 218 232 4.8E-5 T 19-04-2016 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 SUPERFAMILY SSF46894 915 979 6.46E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:3.30.70.1230 42 114 3.3E-4 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:1.25.40.10 497 560 4.2E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:1.25.40.10 596 830 4.2E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 ProSitePatterns PS00622 LuxR-type HTH domain signature. 938 965 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6980 9fd288623736e64e3bd652d9d96e72e3 983 Gene3D G3DSA:3.40.50.300 129 247 1.1E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5747 7f7ca8a4c30f9af2a641066240da1335 283 Pfam PF01226 Formate/nitrite transporter 15 257 2.1E-57 T 19-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AMED_5747 7f7ca8a4c30f9af2a641066240da1335 283 PANTHER PTHR30520:SF5 26 260 2.6E-66 T 19-04-2016 AMED_5747 7f7ca8a4c30f9af2a641066240da1335 283 Gene3D G3DSA:1.20.1080.10 25 259 1.3E-58 T 19-04-2016 IPR023271 Aquaporin-like AMED_5747 7f7ca8a4c30f9af2a641066240da1335 283 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 169 179 - T 19-04-2016 IPR024002 Formate/nitrite transporter, conserved site AMED_5747 7f7ca8a4c30f9af2a641066240da1335 283 PANTHER PTHR30520 26 260 2.6E-66 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 768 800 1.1E-5 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 SUPERFAMILY SSF51161 717 818 1.11E-21 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:2.160.10.10 676 822 2.4E-19 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 776 804 - T 19-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 SUPERFAMILY SSF47336 514 582 2.88E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 65 438 1.1E-95 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 PANTHER PTHR24095 37 496 1.1E-120 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:1.10.1200.10 514 587 4.5E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 SUPERFAMILY SSF51161 1188 1292 3.05E-18 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:2.160.10.10 1212 1291 1.0E-24 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:2.160.10.10 945 994 1.0E-24 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:3.40.50.980 203 331 1.6E-34 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 SMART SM00823 Phosphopantetheine attachment site 518 586 4.5E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:2.30.38.10 332 403 2.8E-13 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Pfam PF00501 AMP-binding enzyme 159 414 1.8E-48 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Pfam PF00501 AMP-binding enzyme 46 146 7.7E-16 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 SUPERFAMILY SSF51161 875 1057 2.63E-9 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 604 1292 5.2E-216 T 19-04-2016 IPR012728 Non-ribosomal peptide synthetase, C-terminal AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Pfam PF00550 Phosphopantetheine attachment site 520 582 3.7E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:3.40.50.980 37 190 3.9E-32 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 SUPERFAMILY SSF56801 34 531 2.22E-107 T 19-04-2016 AMED_5996 749958c6b2803669fb65aaa36eabeeac 1298 Gene3D G3DSA:3.30.300.30 409 509 4.4E-23 T 19-04-2016 AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 PANTHER PTHR20861 77 268 7.2E-18 T 19-04-2016 AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 99 110 - T 19-04-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 Gene3D G3DSA:3.30.230.10 67 132 1.6E-8 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 Pfam PF00288 GHMP kinases N terminal domain 93 126 8.3E-8 T 19-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 Pfam PF08544 GHMP kinases C terminal 211 285 9.3E-5 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 PANTHER PTHR20861:SF5 77 268 7.2E-18 T 19-04-2016 AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 SUPERFAMILY SSF54211 22 172 4.71E-17 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_4771 c13e1d8241f86ef8d390932cf9722a70 320 PIRSF PIRSF033887 4 300 1.2E-88 T 19-04-2016 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00040+2.7.1.17|KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443|UniPathway: UPA00148 AMED_2405 d9a36c8da6768af87fae051fc9495985 143 Pfam PF00571 CBS domain 72 123 3.4E-10 T 19-04-2016 IPR000644 CBS domain AMED_2405 d9a36c8da6768af87fae051fc9495985 143 Pfam PF00571 CBS domain 14 61 2.4E-8 T 19-04-2016 IPR000644 CBS domain AMED_2405 d9a36c8da6768af87fae051fc9495985 143 SMART SM00116 13 61 2.6E-5 T 19-04-2016 IPR000644 CBS domain AMED_2405 d9a36c8da6768af87fae051fc9495985 143 SMART SM00116 79 126 8.2E-8 T 19-04-2016 IPR000644 CBS domain AMED_2405 d9a36c8da6768af87fae051fc9495985 143 PANTHER PTHR11911 1 140 7.7E-28 T 19-04-2016 AMED_2405 d9a36c8da6768af87fae051fc9495985 143 SUPERFAMILY SSF54631 1 140 1.04E-30 T 19-04-2016 AMED_2405 d9a36c8da6768af87fae051fc9495985 143 Gene3D G3DSA:3.10.580.10 1 127 1.6E-31 T 19-04-2016 AMED_8418 06df5d247f061fb19a8837aee06536a1 187 SUPERFAMILY SSF46689 4 63 1.25E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8418 06df5d247f061fb19a8837aee06536a1 187 PANTHER PTHR30055 2 162 6.6E-44 T 19-04-2016 AMED_8418 06df5d247f061fb19a8837aee06536a1 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 50 4.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8418 06df5d247f061fb19a8837aee06536a1 187 PANTHER PTHR30055:SF64 2 162 6.6E-44 T 19-04-2016 AMED_8418 06df5d247f061fb19a8837aee06536a1 187 Gene3D G3DSA:1.10.357.10 6 186 2.0E-20 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 SUPERFAMILY SSF56645 6 205 8.25E-30 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 PANTHER PTHR10909 1 365 6.2E-35 T 19-04-2016 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 Gene3D G3DSA:1.10.540.10 2 108 1.6E-30 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 PANTHER PTHR10909:SF316 1 365 6.2E-35 T 19-04-2016 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 PIRSF PIRSF016578 1 392 9.8E-107 T 19-04-2016 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 25 88 2.8E-4 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 Gene3D G3DSA:2.40.110.10 114 198 7.0E-24 T 19-04-2016 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 Gene3D G3DSA:1.20.140.10 199 389 1.2E-34 T 19-04-2016 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 SUPERFAMILY SSF47203 227 381 7.99E-9 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_6851 0bf78cce1065d049d37257d23e4a4e5b 392 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 371 9.5E-23 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 PANTHER PTHR31490 246 541 1.4E-76 T 19-04-2016 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 SUPERFAMILY SSF51445 236 541 1.0E-87 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 SMART SM00633 277 543 1.0E-70 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 394 405 5.7E-12 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 423 435 5.7E-12 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 348 359 5.7E-12 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 PRINTS PR00134 Glycosyl hydrolase family 10 signature 308 320 5.7E-12 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 Gene3D G3DSA:3.20.20.80 241 541 6.9E-86 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5064 3060ef6cc7e16bac7809ab9086ca7889 544 Pfam PF00331 Glycosyl hydrolase family 10 244 540 1.5E-81 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_2338 8554093d21ccc65643124b081adeb5f4 446 PANTHER PTHR11662 4 421 3.0E-102 T 19-04-2016 AMED_2338 8554093d21ccc65643124b081adeb5f4 446 Gene3D G3DSA:1.20.1250.20 7 200 3.0E-47 T 19-04-2016 AMED_2338 8554093d21ccc65643124b081adeb5f4 446 PANTHER PTHR11662:SF3 4 421 3.0E-102 T 19-04-2016 AMED_2338 8554093d21ccc65643124b081adeb5f4 446 Pfam PF07690 Major Facilitator Superfamily 16 393 2.1E-58 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2338 8554093d21ccc65643124b081adeb5f4 446 SUPERFAMILY SSF103473 3 429 1.83E-90 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2338 8554093d21ccc65643124b081adeb5f4 446 Gene3D G3DSA:1.20.1250.20 239 429 1.4E-27 T 19-04-2016 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 PANTHER PTHR10098 243 534 1.1E-15 T 19-04-2016 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 PANTHER PTHR10098:SF104 243 534 1.1E-15 T 19-04-2016 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 SUPERFAMILY SSF48452 349 523 3.48E-20 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 Pfam PF13424 Tetratricopeptide repeat 467 523 1.5E-8 T 19-04-2016 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 Gene3D G3DSA:1.25.40.10 227 522 9.7E-21 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 SMART SM00028 302 335 470.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 SMART SM00028 382 415 100.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 SMART SM00028 342 375 84.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6768 a7bf9bc79af1cccf4dd3b1b3d7784a59 741 SMART SM00028 462 495 10.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_9108 dd12c3ddc47b131078539d92314bd760 136 PIRSF PIRSF017349 1 135 9.5E-60 T 19-04-2016 IPR014487 Protein of unknown function DUF3151 AMED_9108 dd12c3ddc47b131078539d92314bd760 136 Pfam PF11349 Protein of unknown function (DUF3151) 7 131 2.8E-59 T 19-04-2016 IPR014487 Protein of unknown function DUF3151 AMED_2031 822c2698ebb43817a0cf70681f6734b6 260 SUPERFAMILY SSF53335 7 193 2.71E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2031 822c2698ebb43817a0cf70681f6734b6 260 PANTHER PTHR10108 9 133 4.0E-21 T 19-04-2016 AMED_2031 822c2698ebb43817a0cf70681f6734b6 260 Pfam PF08242 Methyltransferase domain 41 129 9.3E-16 T 19-04-2016 IPR013217 Methyltransferase type 12 AMED_2031 822c2698ebb43817a0cf70681f6734b6 260 Gene3D G3DSA:3.40.50.150 8 198 9.4E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8169 0e396fe124a5c643a0a708d849061b0c 195 SUPERFAMILY SSF50118 5 97 4.14E-8 T 19-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AMED_8169 0e396fe124a5c643a0a708d849061b0c 195 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 95 1.2E-6 T 19-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:1.10.8.10 3 55 3.8E-25 T 19-04-2016 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:1.10.286.20 190 233 2.3E-17 T 19-04-2016 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 SUPERFAMILY SSF54713 57 88 1.88E-38 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 SUPERFAMILY SSF54713 173 269 1.88E-38 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Pfam PF00889 Elongation factor TS 67 270 2.8E-61 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:3.30.479.20 60 141 7.5E-13 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 270 2.6E-75 T 19-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:3.30.479.20 145 185 2.8E-20 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Gene3D G3DSA:3.30.479.20 234 269 2.8E-20 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 PANTHER PTHR11741 1 269 7.7E-93 T 19-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 Hamap MF_00050 Elongation factor Ts [tsf]. 1 271 65.603 T 19-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 SUPERFAMILY SSF46934 3 56 1.05E-16 T 19-04-2016 IPR009060 UBA-like GO:0005515 AMED_1974 96b26d51bb0e250cbf139f7b8d769b15 271 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 19-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 AMED_1107 fb96769cbc5005bc9ac8943057f5441a 391 Gene3D G3DSA:2.140.10.10 217 353 3.2E-4 T 19-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain AMED_1107 fb96769cbc5005bc9ac8943057f5441a 391 Gene3D G3DSA:2.140.10.10 57 146 3.2E-4 T 19-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain AMED_1107 fb96769cbc5005bc9ac8943057f5441a 391 SUPERFAMILY SSF50998 46 170 4.24E-7 T 19-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMED_1107 fb96769cbc5005bc9ac8943057f5441a 391 SUPERFAMILY SSF50998 227 333 4.24E-7 T 19-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 SUPERFAMILY SSF48498 110 187 2.8E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 Gene3D G3DSA:1.10.357.10 7 193 7.3E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 SUPERFAMILY SSF46689 7 86 1.25E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 2.9E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2477 934c2206a3ee47baf7ac741784317cc6 205 PANTHER PTHR30055 3 197 9.1E-26 T 19-04-2016 AMED_8325 dd7c7d1f51773fb7feba7832d8e5f65d 227 Gene3D G3DSA:3.90.550.10 8 175 7.6E-22 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8325 dd7c7d1f51773fb7feba7832d8e5f65d 227 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 43 169 3.7E-27 T 19-04-2016 IPR018641 Transferase 1, rSAM/selenodomain-associated AMED_8325 dd7c7d1f51773fb7feba7832d8e5f65d 227 SUPERFAMILY SSF53448 9 209 6.47E-25 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8325 dd7c7d1f51773fb7feba7832d8e5f65d 227 PANTHER PTHR36529 1 220 1.1E-44 T 19-04-2016 AMED_3506 6492b172e0354a0fe21cbf6778b908c6 190 PANTHER PTHR34309:SF2 1 145 6.0E-57 T 19-04-2016 AMED_3506 6492b172e0354a0fe21cbf6778b908c6 190 PANTHER PTHR34309 1 145 6.0E-57 T 19-04-2016 AMED_3506 6492b172e0354a0fe21cbf6778b908c6 190 SUPERFAMILY SSF54593 3 134 1.06E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3506 6492b172e0354a0fe21cbf6778b908c6 190 Gene3D G3DSA:3.10.180.10 8 130 3.7E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3506 6492b172e0354a0fe21cbf6778b908c6 190 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 127 4.1E-5 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 Gene3D G3DSA:1.10.10.10 102 159 1.3E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 SUPERFAMILY SSF88946 3 92 5.49E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 PANTHER PTHR30173 3 163 3.3E-23 T 19-04-2016 AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 157 8.7E-15 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 Pfam PF04542 Sigma-70 region 2 11 70 4.3E-6 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 Pfam PF08281 Sigma-70, region 4 103 152 1.6E-11 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 SUPERFAMILY SSF88659 100 158 3.18E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6205 1392f4c02d8c1d3b795450892d5ff339 164 Gene3D G3DSA:1.10.1740.10 2 70 3.9E-12 T 19-04-2016 AMED_8431 dd92a6c654316913fdc2f0f302931fd6 201 SUPERFAMILY SSF52980 17 161 2.73E-18 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_8431 dd92a6c654316913fdc2f0f302931fd6 201 PANTHER PTHR34107:SF2 20 156 3.7E-17 T 19-04-2016 AMED_8431 dd92a6c654316913fdc2f0f302931fd6 201 Gene3D G3DSA:3.90.1570.10 18 171 1.3E-18 T 19-04-2016 IPR012296 Nuclease, putative, TT1808 AMED_8431 dd92a6c654316913fdc2f0f302931fd6 201 Pfam PF05685 Putative restriction endonuclease 23 164 2.0E-19 T 19-04-2016 IPR008538 Domain of unknown function DUF820 AMED_8431 dd92a6c654316913fdc2f0f302931fd6 201 PANTHER PTHR34107 20 156 3.7E-17 T 19-04-2016 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 SUPERFAMILY SSF46689 8 89 9.98E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 SUPERFAMILY SSF48498 86 193 1.63E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 9.3E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 Gene3D G3DSA:1.10.357.10 9 202 7.3E-40 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 6.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 6.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 PANTHER PTHR30055 3 165 1.3E-24 T 19-04-2016 AMED_5676 66bcc9f9ec15f966fdd854af9dd84b2f 211 PANTHER PTHR30055:SF49 3 165 1.3E-24 T 19-04-2016 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 PANTHER PTHR24362 1 344 6.1E-71 T 19-04-2016 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 SUPERFAMILY SSF56112 1 330 1.69E-61 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 PANTHER PTHR24362:SF160 1 344 6.1E-71 T 19-04-2016 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 113 125 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 Gene3D G3DSA:3.30.200.20 1 60 5.8E-15 T 19-04-2016 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 SMART SM00220 1 248 4.1E-43 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 Pfam PF00069 Protein kinase domain 2 242 5.6E-42 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2653 53a8d47abe35935c8de7e79b66929efa 540 Gene3D G3DSA:1.10.510.10 61 243 2.1E-43 T 19-04-2016 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 531 1.6E-21 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3360 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:2.30.38.10 367 437 2.3E-13 T 19-04-2016 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:3.30.300.30 439 539 1.0E-29 T 19-04-2016 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:3.40.50.980 209 361 2.2E-28 T 19-04-2016 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 Pfam PF00501 AMP-binding enzyme 49 444 1.7E-77 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 SUPERFAMILY SSF56801 28 540 8.9E-131 T 19-04-2016 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 ProSitePatterns PS00455 Putative AMP-binding domain signature. 203 214 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3360 551fec50a69611734a8ba38b89cad19c 540 Gene3D G3DSA:3.40.50.980 47 208 3.3E-31 T 19-04-2016 AMED_3360 551fec50a69611734a8ba38b89cad19c 540 PANTHER PTHR24095 36 540 3.5E-131 T 19-04-2016 AMED_0048 617c5befcf1ea2fd221af257421b3998 263 Pfam PF00005 ABC transporter 18 146 1.1E-20 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0048 617c5befcf1ea2fd221af257421b3998 263 PANTHER PTHR24220:SF595 3 199 6.8E-52 T 19-04-2016 AMED_0048 617c5befcf1ea2fd221af257421b3998 263 SMART SM00382 27 213 2.0E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0048 617c5befcf1ea2fd221af257421b3998 263 ProSitePatterns PS00211 ABC transporters family signature. 119 133 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0048 617c5befcf1ea2fd221af257421b3998 263 SUPERFAMILY SSF52540 2 198 4.77E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0048 617c5befcf1ea2fd221af257421b3998 263 Gene3D G3DSA:3.40.50.300 1 199 1.9E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0048 617c5befcf1ea2fd221af257421b3998 263 PANTHER PTHR24220 3 199 6.8E-52 T 19-04-2016 AMED_8138 c88247a3ce022d9a4d80d7524ca08f67 274 Pfam PF13354 Beta-lactamase enzyme family 107 175 2.4E-5 T 19-04-2016 AMED_8138 c88247a3ce022d9a4d80d7524ca08f67 274 Gene3D G3DSA:3.40.710.10 107 246 7.0E-11 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8138 c88247a3ce022d9a4d80d7524ca08f67 274 SUPERFAMILY SSF56601 46 268 3.9E-21 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3949 1275aa52f443ab93b4e1092904c1b0a8 222 PANTHER PTHR30055 2 137 1.2E-23 T 19-04-2016 AMED_3949 1275aa52f443ab93b4e1092904c1b0a8 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3949 1275aa52f443ab93b4e1092904c1b0a8 222 PANTHER PTHR30055:SF74 2 137 1.2E-23 T 19-04-2016 AMED_3949 1275aa52f443ab93b4e1092904c1b0a8 222 SUPERFAMILY SSF46689 9 79 8.72E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3949 1275aa52f443ab93b4e1092904c1b0a8 222 Gene3D G3DSA:1.10.357.10 4 206 2.5E-21 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7634 1a006ef628bc507763051cf62772b54b 245 Gene3D G3DSA:3.40.430.10 20 243 7.9E-52 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7634 1a006ef628bc507763051cf62772b54b 245 SUPERFAMILY SSF53597 28 241 2.52E-34 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7634 1a006ef628bc507763051cf62772b54b 245 Pfam PF01872 RibD C-terminal domain 28 238 7.1E-26 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 PANTHER PTHR12143:SF22 235 763 5.2E-139 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 PANTHER PTHR12143:SF22 17 199 5.2E-139 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Gene3D G3DSA:3.30.2080.10 589 731 2.5E-47 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 SUPERFAMILY SSF48208 272 669 1.11E-20 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Pfam PF07971 Glycosyl hydrolase family 92 248 721 9.7E-156 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Gene3D G3DSA:1.20.1610.10 454 588 3.8E-44 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 PANTHER PTHR12143 235 763 5.2E-139 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 PANTHER PTHR12143 17 199 5.2E-139 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 13 724 5.0E-151 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Gene3D G3DSA:1.20.1050.60 360 449 8.3E-25 T 19-04-2016 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Gene3D G3DSA:2.70.98.10 237 332 6.7E-97 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_1596 da0a2f1d9c85a31f0bceaaeca95443a0 1035 Gene3D G3DSA:2.70.98.10 11 205 6.7E-97 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_8190 fe76a91ea8077555b948456c176c0908 574 Pfam PF00082 Subtilase family 164 522 1.5E-41 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795 475 496 1.3E-36 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8190 fe76a91ea8077555b948456c176c0908 574 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 168 179 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_8190 fe76a91ea8077555b948456c176c0908 574 SUPERFAMILY SSF52743 370 568 3.53E-59 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8190 fe76a91ea8077555b948456c176c0908 574 SUPERFAMILY SSF52743 147 342 3.53E-59 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8190 fe76a91ea8077555b948456c176c0908 574 Gene3D G3DSA:3.40.50.200 139 436 4.3E-72 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8190 fe76a91ea8077555b948456c176c0908 574 Gene3D G3DSA:3.40.50.200 470 567 4.3E-72 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8190 fe76a91ea8077555b948456c176c0908 574 PRINTS PR00723 Subtilisin serine protease family (S8) signature 476 492 5.1E-20 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8190 fe76a91ea8077555b948456c176c0908 574 PRINTS PR00723 Subtilisin serine protease family (S8) signature 223 236 5.1E-20 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8190 fe76a91ea8077555b948456c176c0908 574 PRINTS PR00723 Subtilisin serine protease family (S8) signature 163 182 5.1E-20 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8190 fe76a91ea8077555b948456c176c0908 574 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 227 237 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_8190 fe76a91ea8077555b948456c176c0908 574 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 477 487 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795:SF419 213 361 1.3E-36 T 19-04-2016 AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795:SF419 380 423 1.3E-36 T 19-04-2016 AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795:SF419 475 496 1.3E-36 T 19-04-2016 AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795:SF419 166 185 1.3E-36 T 19-04-2016 AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795 380 423 1.3E-36 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795 213 361 1.3E-36 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_8190 fe76a91ea8077555b948456c176c0908 574 PANTHER PTHR10795 166 185 1.3E-36 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_4670 2d8188eb90c966f037f8752d2607290c 513 SUPERFAMILY SSF51556 48 204 3.18E-50 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_4670 2d8188eb90c966f037f8752d2607290c 513 SUPERFAMILY SSF51556 246 456 3.18E-50 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_4670 2d8188eb90c966f037f8752d2607290c 513 Pfam PF00962 Adenosine/AMP deaminase 279 454 3.2E-22 T 19-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 AMED_4670 2d8188eb90c966f037f8752d2607290c 513 PANTHER PTHR11409 248 454 1.1E-37 T 19-04-2016 AMED_4670 2d8188eb90c966f037f8752d2607290c 513 PANTHER PTHR11409 50 211 1.1E-37 T 19-04-2016 AMED_4670 2d8188eb90c966f037f8752d2607290c 513 Gene3D G3DSA:3.20.20.140 56 459 6.8E-62 T 19-04-2016 AMED_1912 f6b45f5feecc0be8e4b59d075cbbf934 395 Gene3D G3DSA:3.20.20.360 161 259 3.1E-15 T 19-04-2016 AMED_1912 f6b45f5feecc0be8e4b59d075cbbf934 395 PANTHER PTHR32308 77 381 1.7E-31 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_1912 f6b45f5feecc0be8e4b59d075cbbf934 395 Pfam PF01274 Malate synthase 164 240 6.2E-6 T 19-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1912 f6b45f5feecc0be8e4b59d075cbbf934 395 SUPERFAMILY SSF51621 78 320 1.67E-15 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 SUPERFAMILY SSF51905 9 181 6.2E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 SUPERFAMILY SSF51905 272 361 6.2E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 Pfam PF01494 FAD binding domain 8 327 7.9E-57 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 4.3E-20 T 19-04-2016 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 4.3E-20 T 19-04-2016 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 4.3E-20 T 19-04-2016 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 160 175 4.3E-20 T 19-04-2016 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 Gene3D G3DSA:3.50.50.60 7 186 2.0E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 Gene3D G3DSA:3.50.50.60 273 350 2.0E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 PANTHER PTHR13789 1 415 4.3E-143 T 19-04-2016 AMED_1699 efc3b3b3e7bb785f0bd21c81838e5af7 415 PANTHER PTHR13789:SF209 1 415 4.3E-143 T 19-04-2016 AMED_7712 760a7327bb8525f196cbe4f8bf9b4ec1 90 PANTHER PTHR38031:SF1 1 90 5.7E-19 T 19-04-2016 AMED_7712 760a7327bb8525f196cbe4f8bf9b4ec1 90 Pfam PF02597 ThiS family 5 90 9.8E-19 T 19-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 AMED_7712 760a7327bb8525f196cbe4f8bf9b4ec1 90 PANTHER PTHR38031 1 90 5.7E-19 T 19-04-2016 AMED_7712 760a7327bb8525f196cbe4f8bf9b4ec1 90 Gene3D G3DSA:3.10.20.30 3 88 1.2E-30 T 19-04-2016 IPR012675 Beta-grasp domain AMED_7712 760a7327bb8525f196cbe4f8bf9b4ec1 90 SUPERFAMILY SSF54285 1 90 1.19E-23 T 19-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 PANTHER PTHR10909 89 253 4.5E-142 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 SUPERFAMILY SSF47203 274 455 4.34E-47 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF01756 Acyl-CoA oxidase 493 625 3.2E-22 T 19-04-2016 IPR002655 Acyl-CoA oxidase, C-terminal GO:0003997|GO:0005777|GO:0006635|GO:0055114 KEGG: 00071+1.3.3.6|KEGG: 00592+1.3.3.6|MetaCyc: PWY-5136|MetaCyc: PWY-6837|MetaCyc: PWY-6920|MetaCyc: PWY-7007|MetaCyc: PWY-7288|MetaCyc: PWY-7291|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7726 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 278 435 3.8E-12 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:2.40.110.10 136 264 4.8E-45 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 137 244 2.4E-16 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:1.10.540.10 55 133 1.1E-7 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 SUPERFAMILY SSF56645 15 260 1.83E-54 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 PANTHER PTHR10909 270 455 4.5E-142 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 PIRSF PIRSF000168 5 628 3.8E-166 T 19-04-2016 IPR012258 Acyl-CoA oxidase GO:0003997|GO:0005777|GO:0006631|GO:0050660|GO:0055114 KEGG: 00071+1.3.3.6|KEGG: 00592+1.3.3.6|MetaCyc: PWY-5136|MetaCyc: PWY-6837|MetaCyc: PWY-6920|MetaCyc: PWY-7007|MetaCyc: PWY-7288|MetaCyc: PWY-7291|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7726 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:1.20.140.10 489 615 7.0E-39 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 PANTHER PTHR10909:SF317 270 455 4.5E-142 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 PANTHER PTHR10909:SF317 89 253 4.5E-142 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 SUPERFAMILY SSF47203 486 625 4.19E-37 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Gene3D G3DSA:1.20.140.10 285 444 9.0E-53 T 19-04-2016 AMED_8080 c25af5b48c7fabf9e5f685f121224d09 629 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 53 131 1.0E-5 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6402 2aba8f4416b7f7da192950912fdd3332 141 SMART SM00960 12 102 1.2E-29 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_6402 2aba8f4416b7f7da192950912fdd3332 141 Pfam PF03259 Roadblock/LC7 domain 12 102 1.9E-23 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_6402 2aba8f4416b7f7da192950912fdd3332 141 SUPERFAMILY SSF103196 6 131 8.2E-34 T 19-04-2016 AMED_6402 2aba8f4416b7f7da192950912fdd3332 141 PANTHER PTHR36222 1 141 5.0E-46 T 19-04-2016 AMED_6402 2aba8f4416b7f7da192950912fdd3332 141 Gene3D G3DSA:3.30.450.30 7 128 1.4E-28 T 19-04-2016 AMED_5927 01e675342b43a0728aa0f43863196903 752 SUPERFAMILY SSF49313 516 597 8.95E-8 T 19-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 AMED_5927 01e675342b43a0728aa0f43863196903 752 PANTHER PTHR33794:SF2 65 503 2.9E-50 T 19-04-2016 AMED_5927 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:2.60.40.10 542 597 2.3E-5 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5927 01e675342b43a0728aa0f43863196903 752 PANTHER PTHR33794 65 503 2.9E-50 T 19-04-2016 AMED_5927 01e675342b43a0728aa0f43863196903 752 Pfam PF05345 Putative Ig domain 545 584 2.1E-10 T 19-04-2016 IPR008009 Putative Ig AMED_5927 01e675342b43a0728aa0f43863196903 752 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 200 328 1.3E-22 T 19-04-2016 IPR013856 Peptidase M4 domain GO:0004222 AMED_5927 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:1.10.390.10 341 500 3.4E-33 T 19-04-2016 AMED_5927 01e675342b43a0728aa0f43863196903 752 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 342 500 7.1E-28 T 19-04-2016 IPR001570 Peptidase M4, C-terminal GO:0004222 AMED_5927 01e675342b43a0728aa0f43863196903 752 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 69 101 2.3E-6 T 19-04-2016 IPR011096 FTP domain AMED_5927 01e675342b43a0728aa0f43863196903 752 SUPERFAMILY SSF55486 188 500 6.59E-52 T 19-04-2016 AMED_5927 01e675342b43a0728aa0f43863196903 752 Gene3D G3DSA:3.10.170.10 191 333 3.9E-24 T 19-04-2016 IPR013856 Peptidase M4 domain GO:0004222 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 PANTHER PTHR30465 194 337 1.0E-91 T 19-04-2016 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 336 1.8E-40 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 Gene3D G3DSA:1.10.3720.10 203 333 3.0E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 Gene3D G3DSA:1.10.3720.10 93 167 3.0E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 SUPERFAMILY SSF161098 95 164 5.4E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 SUPERFAMILY SSF161098 200 319 5.4E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 PANTHER PTHR30465:SF24 6 173 1.0E-91 T 19-04-2016 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 PANTHER PTHR30465 6 173 1.0E-91 T 19-04-2016 AMED_8027 f305cbba4f8b7671385863ef7339dbed 338 PANTHER PTHR30465:SF24 194 337 1.0E-91 T 19-04-2016 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 PANTHER PTHR30346:SF0 1 282 7.4E-83 T 19-04-2016 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 Gene3D G3DSA:3.40.190.10 90 174 6.4E-15 T 19-04-2016 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 SUPERFAMILY SSF53850 89 281 1.36E-23 T 19-04-2016 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 Pfam PF03466 LysR substrate binding domain 88 279 1.4E-25 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 PANTHER PTHR30346 1 282 7.4E-83 T 19-04-2016 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.3E-20 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 SUPERFAMILY SSF46785 1 84 7.14E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 Gene3D G3DSA:1.10.10.10 1 84 9.1E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 Gene3D G3DSA:3.40.190.10 175 251 1.9E-5 T 19-04-2016 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2066 5d5b28ae836fef1e623ee787d84238c3 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PANTHER PTHR19375 753 768 1.0E-55 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.90.640.10 479 561 9.7E-8 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 SUPERFAMILY SSF53067 439 639 7.07E-26 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PANTHER PTHR19375:SF144 753 768 1.0E-55 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:2.60.34.10 626 754 9.8E-6 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.40.50.1460 2 137 1.4E-15 T 19-04-2016 IPR029030 Caspase-like domain AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.30.420.40 279 448 2.5E-33 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Pfam PF00656 Caspase domain 3 229 1.6E-20 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 SUPERFAMILY SSF52129 3 218 5.23E-20 T 19-04-2016 IPR029030 Caspase-like domain AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PANTHER PTHR19375:SF144 278 695 1.0E-55 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PANTHER PTHR19375 278 695 1.0E-55 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 451 461 4.2E-13 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 589 605 4.2E-13 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 279 292 4.2E-13 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 620 640 4.2E-13 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 308 320 4.2E-13 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 PRINTS PR00301 70kDa heat shock protein signature 730 746 4.2E-13 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Pfam PF00012 Hsp70 protein 282 355 6.9E-7 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Pfam PF00012 Hsp70 protein 362 660 2.7E-43 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.30.420.40 571 615 5.1E-10 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 Gene3D G3DSA:3.30.420.40 449 478 5.1E-10 T 19-04-2016 AMED_6426 2a535cdcfb64cc695b65c708eba2c2dc 769 SUPERFAMILY SSF53067 280 431 6.99E-32 T 19-04-2016 AMED_2224 95e20eaee38d165240e438abdd964a26 525 PANTHER PTHR11632:SF27 1 505 1.6E-172 T 19-04-2016 AMED_2224 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF46977 415 511 1.96E-21 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_2224 95e20eaee38d165240e438abdd964a26 525 Pfam PF02910 Fumarate reductase flavoprotein C-term 419 505 1.7E-9 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_2224 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF56425 220 337 7.78E-31 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2224 95e20eaee38d165240e438abdd964a26 525 Pfam PF00890 FAD binding domain 1 377 1.2E-82 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_2224 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:3.90.700.10 226 333 9.7E-29 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2224 95e20eaee38d165240e438abdd964a26 525 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 1 493 1.6E-151 T 19-04-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 AMED_2224 95e20eaee38d165240e438abdd964a26 525 PANTHER PTHR11632 1 505 1.6E-172 T 19-04-2016 AMED_2224 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF51905 341 393 1.12E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2224 95e20eaee38d165240e438abdd964a26 525 SUPERFAMILY SSF51905 1 237 1.12E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2224 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:1.20.58.100 414 508 5.0E-15 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_2224 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:3.50.50.60 1 225 6.8E-85 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2224 95e20eaee38d165240e438abdd964a26 525 Gene3D G3DSA:3.50.50.60 334 395 6.8E-85 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3239 236625f4ca661f5586cc1e00118ab671 467 Gene3D G3DSA:2.60.120.10 98 210 6.7E-21 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3239 236625f4ca661f5586cc1e00118ab671 467 SMART SM00100 92 215 3.5E-9 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_3239 236625f4ca661f5586cc1e00118ab671 467 PANTHER PTHR24567 15 213 8.8E-179 T 19-04-2016 AMED_3239 236625f4ca661f5586cc1e00118ab671 467 PANTHER PTHR24567:SF37 281 465 8.8E-179 T 19-04-2016 AMED_3239 236625f4ca661f5586cc1e00118ab671 467 PANTHER PTHR24567:SF37 15 213 8.8E-179 T 19-04-2016 AMED_3239 236625f4ca661f5586cc1e00118ab671 467 SUPERFAMILY SSF56563 298 460 3.79E-5 T 19-04-2016 AMED_3239 236625f4ca661f5586cc1e00118ab671 467 PANTHER PTHR24567 281 465 8.8E-179 T 19-04-2016 AMED_3239 236625f4ca661f5586cc1e00118ab671 467 Pfam PF00027 Cyclic nucleotide-binding domain 112 199 1.2E-14 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_3239 236625f4ca661f5586cc1e00118ab671 467 SUPERFAMILY SSF51206 98 204 1.03E-21 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 PANTHER PTHR10584:SF157 1 263 3.4E-34 T 19-04-2016 AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 PANTHER PTHR10584 1 263 3.4E-34 T 19-04-2016 AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 PRINTS PR00990 Ribokinase signature 30 49 2.3E-7 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 PRINTS PR00990 Ribokinase signature 190 201 2.3E-7 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 PRINTS PR00990 Ribokinase signature 3 24 2.3E-7 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 Pfam PF00294 pfkB family carbohydrate kinase 4 174 8.0E-16 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 Pfam PF00294 pfkB family carbohydrate kinase 182 264 1.6E-14 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 Gene3D G3DSA:3.40.1190.20 1 266 4.8E-57 T 19-04-2016 IPR029056 Ribokinase-like AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 220 233 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_9135 4271727646648da79fa9c887e8e9dcc4 275 SUPERFAMILY SSF53613 1 265 9.51E-43 T 19-04-2016 IPR029056 Ribokinase-like AMED_8894 58666a8e7cd6f6ef58f0ab97c6cec793 213 PANTHER PTHR30353:SF2 2 210 8.0E-77 T 19-04-2016 AMED_8894 58666a8e7cd6f6ef58f0ab97c6cec793 213 Pfam PF09335 SNARE associated Golgi protein 32 160 3.6E-18 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_8894 58666a8e7cd6f6ef58f0ab97c6cec793 213 PANTHER PTHR30353 2 210 8.0E-77 T 19-04-2016 IPR032818 DedA family AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 Gene3D G3DSA:1.10.10.10 123 218 2.2E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 SMART SM00448 1 110 4.5E-35 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 Pfam PF00072 Response regulator receiver domain 1 110 6.2E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 PANTHER PTHR26402 1 217 2.5E-71 T 19-04-2016 AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 Gene3D G3DSA:3.40.50.2300 1 118 1.3E-36 T 19-04-2016 AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 SMART SM00862 144 219 2.2E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 SUPERFAMILY SSF52172 1 165 6.83E-37 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 1.5E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8036 394dbfa61caf10729efa8865cb3c5de5 230 PANTHER PTHR26402:SF578 1 217 2.5E-71 T 19-04-2016 AMED_6285 7ac9d0ff24556b7ed87304ffc27b396d 169 SUPERFAMILY SSF55729 7 137 4.12E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6285 7ac9d0ff24556b7ed87304ffc27b396d 169 PANTHER PTHR23091 2 126 2.8E-18 T 19-04-2016 AMED_6285 7ac9d0ff24556b7ed87304ffc27b396d 169 Gene3D G3DSA:3.40.630.30 9 147 1.3E-26 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6285 7ac9d0ff24556b7ed87304ffc27b396d 169 Pfam PF00583 Acetyltransferase (GNAT) family 51 122 1.6E-11 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 Pfam PF00709 Adenylosuccinate synthetase 4 422 9.9E-172 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 19-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 SMART SM00788 3 423 2.3E-271 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 PANTHER PTHR11846 4 427 1.9E-221 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:3.40.440.10 194 265 1.6E-63 T 19-04-2016 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:3.40.440.10 2 94 1.6E-63 T 19-04-2016 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:1.10.300.10 102 193 2.0E-35 T 19-04-2016 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 132 143 - T 19-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 Gene3D G3DSA:3.90.170.10 267 424 2.5E-67 T 19-04-2016 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 SUPERFAMILY SSF52540 1 426 4.14E-167 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 428 198.468 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMED_9098 4f285d9c7f5634ccd892e4fdf1220f2a 428 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 425 1.2E-161 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMED_9268 ecebf1e7f71122818c40054573549dd1 231 PANTHER PTHR23417 9 231 3.8E-62 T 19-04-2016 AMED_9268 ecebf1e7f71122818c40054573549dd1 231 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 230 2.0E-46 T 19-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 AMED_9268 ecebf1e7f71122818c40054573549dd1 231 Pfam PF02390 Putative methyltransferase 59 222 8.9E-51 T 19-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 AMED_9268 ecebf1e7f71122818c40054573549dd1 231 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 16 231 29.188 T 19-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 AMED_9268 ecebf1e7f71122818c40054573549dd1 231 SUPERFAMILY SSF53335 10 230 4.97E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9268 ecebf1e7f71122818c40054573549dd1 231 Gene3D G3DSA:3.40.50.150 55 193 2.8E-10 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9268 ecebf1e7f71122818c40054573549dd1 231 PANTHER PTHR23417:SF14 9 231 3.8E-62 T 19-04-2016 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 130 1.1E-28 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 PANTHER PTHR20941:SF10 1 156 4.0E-48 T 19-04-2016 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 85 96 - T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 Gene3D G3DSA:3.30.70.560 3 151 8.6E-45 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 1.1E-33 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 PANTHER PTHR20941 1 156 4.0E-48 T 19-04-2016 AMED_8744 26b1f6aa2804b74f1a2e1ec5bc5148c7 163 SUPERFAMILY SSF55083 3 151 7.85E-42 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_1978 a7336948c7e829ab445b0740272ef23e 281 PANTHER PTHR33993:SF3 15 267 1.3E-42 T 19-04-2016 AMED_1978 a7336948c7e829ab445b0740272ef23e 281 SUPERFAMILY SSF54593 144 261 2.04E-12 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1978 a7336948c7e829ab445b0740272ef23e 281 SUPERFAMILY SSF54593 17 133 1.29E-12 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1978 a7336948c7e829ab445b0740272ef23e 281 Gene3D G3DSA:3.10.180.10 148 262 3.8E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1978 a7336948c7e829ab445b0740272ef23e 281 Gene3D G3DSA:3.10.180.10 17 131 1.8E-22 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1978 a7336948c7e829ab445b0740272ef23e 281 PANTHER PTHR33993 15 267 1.3E-42 T 19-04-2016 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 Gene3D G3DSA:3.40.50.1240 141 289 1.4E-19 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-5 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-5 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 SMART SM00855 142 256 1.3E-11 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 PANTHER PTHR22769 5 203 1.2E-28 T 19-04-2016 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 SUPERFAMILY SSF53254 141 272 3.53E-19 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 Gene3D G3DSA:3.90.79.10 4 134 2.7E-34 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 SUPERFAMILY SSF55811 6 135 2.98E-31 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 Pfam PF00293 NUDIX domain 6 132 5.1E-21 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 PANTHER PTHR22769:SF27 5 203 1.2E-28 T 19-04-2016 AMED_1727 3769c31cd0864c441a8d4c1046a68e65 317 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 143 220 4.3E-11 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_5905 0309d986451afdd8a3e7069ff15ea67f 185 Gene3D G3DSA:3.40.50.1950 5 180 9.3E-17 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_5905 0309d986451afdd8a3e7069ff15ea67f 185 Pfam PF02441 Flavoprotein 6 127 5.0E-11 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_5905 0309d986451afdd8a3e7069ff15ea67f 185 SUPERFAMILY SSF52507 5 179 2.62E-18 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_2576 214625014bd66833b1fc8c82500e8998 261 PANTHER PTHR40053 1 261 6.2E-52 T 19-04-2016 AMED_2576 214625014bd66833b1fc8c82500e8998 261 Pfam PF07070 SpoOM protein 2 214 2.0E-63 T 19-04-2016 IPR009776 Sporulation stage 0, protein M AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 PIRSF PIRSF016573 11 178 1.4E-49 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 SUPERFAMILY SSF55486 35 162 2.27E-24 T 19-04-2016 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 Gene3D G3DSA:3.40.390.10 34 162 2.6E-31 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 Pfam PF02031 Streptomyces extracellular neutral proteinase (M7) family 34 165 3.7E-42 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 ProDom PD016028 PROTEASE METALLOPROTEASE EXTRACELLULAR NEUTRAL SMALL METAL-BINDING ZINC HYDROLASE SNAPALYSIN ZYMOGEN 42 165 2.0E-30 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 98 122 6.3E-27 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 123 147 6.3E-27 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 40 66 6.3E-27 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_2840 a1ebb0bffd9d34bd47d0d89418bb8322 179 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 150 164 6.3E-27 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 SMART SM00421 144 201 1.1E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 PANTHER PTHR26402:SF151 97 207 1.1E-20 T 19-04-2016 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 PANTHER PTHR26402 97 207 1.1E-20 T 19-04-2016 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 SUPERFAMILY SSF46894 135 207 1.26E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 1.7E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 9.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 9.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 9.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0982 d54cf5306cc2d5392ccf20d392eb03ea 207 Gene3D G3DSA:1.10.10.10 147 207 3.0E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1803 68870e00c164a2b6b7efbfa5fe5e39df 107 PANTHER PTHR33169:SF1 2 102 2.6E-22 T 19-04-2016 AMED_1803 68870e00c164a2b6b7efbfa5fe5e39df 107 SUPERFAMILY SSF46785 3 105 4.46E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1803 68870e00c164a2b6b7efbfa5fe5e39df 107 PANTHER PTHR33169 2 102 2.6E-22 T 19-04-2016 AMED_1803 68870e00c164a2b6b7efbfa5fe5e39df 107 Pfam PF03551 Transcriptional regulator PadR-like family 15 87 4.8E-18 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_1803 68870e00c164a2b6b7efbfa5fe5e39df 107 Gene3D G3DSA:1.10.10.10 4 105 5.2E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PANTHER PTHR24322 6 128 3.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PANTHER PTHR24322 144 175 3.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 Gene3D G3DSA:3.40.50.720 4 214 2.8E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PANTHER PTHR24322:SF330 6 128 3.5E-39 T 19-04-2016 AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PANTHER PTHR24322:SF330 144 175 3.5E-39 T 19-04-2016 AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 SUPERFAMILY SSF51735 4 245 8.2E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.6E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 1.6E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 1.6E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.6E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 1.6E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3127 feae92a41298d4ccb41a1b7c0efb69df 256 Pfam PF00106 short chain dehydrogenase 4 185 3.3E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1202 7b1d38411bc57280465e005d8159759f 360 SUPERFAMILY SSF50331 259 353 3.51E-9 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_1202 7b1d38411bc57280465e005d8159759f 360 Gene3D G3DSA:3.40.50.300 19 257 6.3E-82 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1202 7b1d38411bc57280465e005d8159759f 360 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1202 7b1d38411bc57280465e005d8159759f 360 Pfam PF00005 ABC transporter 43 184 3.9E-35 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1202 7b1d38411bc57280465e005d8159759f 360 Pfam PF08402 TOBE domain 279 353 7.4E-17 T 19-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AMED_1202 7b1d38411bc57280465e005d8159759f 360 SUPERFAMILY SSF52540 27 262 7.92E-87 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1202 7b1d38411bc57280465e005d8159759f 360 SMART SM00382 51 234 2.8E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1202 7b1d38411bc57280465e005d8159759f 360 PANTHER PTHR24220 28 288 1.6E-137 T 19-04-2016 AMED_1202 7b1d38411bc57280465e005d8159759f 360 PANTHER PTHR24220:SF150 28 288 1.6E-137 T 19-04-2016 AMED_0959 9d9133f87b8e307f8dcc57db91d3964e 294 Pfam PF01841 Transglutaminase-like superfamily 86 147 9.0E-9 T 19-04-2016 IPR002931 Transglutaminase-like AMED_0959 9d9133f87b8e307f8dcc57db91d3964e 294 SUPERFAMILY SSF54001 80 235 1.54E-13 T 19-04-2016 AMED_0959 9d9133f87b8e307f8dcc57db91d3964e 294 SMART SM00460 87 149 0.0048 T 19-04-2016 IPR002931 Transglutaminase-like AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PANTHER PTHR21661:SF35 5 366 3.3E-104 T 19-04-2016 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PANTHER PTHR21661 5 366 3.3E-104 T 19-04-2016 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PIRSF PIRSF001112 2 366 3.4E-112 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 SUPERFAMILY SSF53474 4 363 2.21E-88 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 126 141 7.8E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 339 361 7.8E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 97 115 7.8E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 307 323 7.8E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 PRINTS PR00412 Epoxide hydrolase signature 168 181 7.8E-14 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 Gene3D G3DSA:3.40.50.1820 4 364 5.2E-126 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7804 aa6020e11e5e3642a1e1e423b5ac9a25 366 Pfam PF06441 Epoxide hydrolase N terminus 3 106 2.8E-29 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 108 119 - T 19-04-2016 IPR018215 ClpP, Ser active site AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 Pfam PF00574 Clp protease 36 209 5.9E-75 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 Gene3D G3DSA:3.90.226.10 22 210 5.1E-76 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PANTHER PTHR10381:SF7 16 212 1.2E-130 T 19-04-2016 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PANTHER PTHR10381 16 212 1.2E-130 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 SUPERFAMILY SSF52096 29 214 1.04E-62 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 130 143 - T 19-04-2016 IPR033135 ClpP, histidine active site AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 187 206 1.3E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 37 52 1.3E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 108 125 1.3E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 77 97 1.3E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 PRINTS PR00127 Clp protease catalytic subunit P signature 129 148 1.3E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6740 a4a1eab511d15a97e8bd43e44ee7a4d0 217 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 21 212 39.48 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 Gene3D G3DSA:3.30.420.140 1 127 1.4E-35 T 19-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 124 14.117 T 19-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 PANTHER PTHR33317:SF1 1 121 3.1E-27 T 19-04-2016 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 PANTHER PTHR33317 1 121 3.1E-27 T 19-04-2016 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 1 121 7.2E-22 T 19-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 SUPERFAMILY SSF53098 1 122 1.71E-25 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 Pfam PF03652 Holliday junction resolvase 1 121 1.2E-32 T 19-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMED_2714 88e7f7a13b42e6094966778bc8da89b2 133 SMART SM00732 1 89 1.8E-7 T 19-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 AMED_1583 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 PANTHER PTHR21631:SF18 3 223 3.2E-49 T 19-04-2016 AMED_1583 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 SUPERFAMILY SSF51621 3 240 1.33E-53 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1583 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 Pfam PF13714 Phosphoenolpyruvate phosphomutase 6 236 1.0E-67 T 19-04-2016 AMED_1583 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 PANTHER PTHR21631 3 223 3.2E-49 T 19-04-2016 AMED_1583 5e6a12e9b1d40d8dbedfd7ce5be0601e 245 Gene3D G3DSA:3.20.20.60 3 219 8.9E-61 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 PANTHER PTHR30157 7 256 9.1E-54 T 19-04-2016 AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 Gene3D G3DSA:2.40.30.10 7 126 5.9E-30 T 19-04-2016 AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 PANTHER PTHR30157:SF0 7 256 9.1E-54 T 19-04-2016 AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 Pfam PF08021 Siderophore-interacting FAD-binding domain 8 128 5.5E-31 T 19-04-2016 IPR013113 FAD-binding 9, siderophore-interacting AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 Gene3D G3DSA:3.40.50.80 132 251 1.7E-38 T 19-04-2016 AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 Pfam PF04954 Siderophore-interacting protein 136 245 2.7E-33 T 19-04-2016 IPR007037 Siderophore-interacting protein AMED_1317 ce17a16be515ab4e1ccc2a2a8f750170 274 SUPERFAMILY SSF63380 6 127 1.88E-10 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 SUPERFAMILY SSF48013 32 187 8.01E-33 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PANTHER PTHR22807 25 473 2.5E-76 T 19-04-2016 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 Gene3D G3DSA:3.40.50.150 271 473 1.8E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PANTHER PTHR22807:SF30 25 473 2.5E-76 T 19-04-2016 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 Pfam PF01189 16S rRNA methyltransferase RsmB/F 288 472 5.5E-46 T 19-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 292 302 1.7E-20 T 19-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 259 273 1.7E-20 T 19-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 456 473 1.7E-20 T 19-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 405 421 1.7E-20 T 19-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 355 367 1.7E-20 T 19-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 Gene3D G3DSA:1.10.940.10 31 188 1.2E-46 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 SUPERFAMILY SSF53335 176 473 3.84E-50 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2765 dceba7745ab7c0781cb4d73423d09279 474 Pfam PF01029 NusB family 32 154 4.1E-26 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 PANTHER PTHR36195 210 364 2.6E-36 T 19-04-2016 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 PANTHER PTHR36195 47 194 2.6E-36 T 19-04-2016 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 PANTHER PTHR36195:SF3 210 364 2.6E-36 T 19-04-2016 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 PANTHER PTHR36195:SF3 47 194 2.6E-36 T 19-04-2016 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 Gene3D G3DSA:2.40.180.10 44 358 9.2E-24 T 19-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 SUPERFAMILY SSF56634 41 160 7.02E-33 T 19-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMED_5646 56348a9d9ac303e6ff4d86895c78394e 376 SUPERFAMILY SSF56634 186 357 7.02E-33 T 19-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 SUPERFAMILY SSF81442 25 535 1.83E-175 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 436 457 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 323 344 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 194 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 74 97 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 27 52 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 125 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 224 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 301 316 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 144 156 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 386 405 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 376 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 234 255 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PRINTS PR01165 Cytochrome c oxidase subunit I signature 255 276 2.4E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 257 311 - T 19-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 30 532 1.1E-213 T 19-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 Gene3D G3DSA:1.20.210.10 24 549 1.4E-191 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PANTHER PTHR10422 13 554 1.2E-288 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 37 480 5.8E-148 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3059 9fb18cba2b2df83dfb77639423217d2b 590 PANTHER PTHR10422:SF6 13 554 1.2E-288 T 19-04-2016 AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 PANTHER PTHR30337:SF0 1 381 5.6E-62 T 19-04-2016 AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 2 252 3.4E-51 T 19-04-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 Gene3D G3DSA:3.60.21.10 2 275 1.0E-56 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 Pfam PF00149 Calcineurin-like phosphoesterase 2 227 3.4E-12 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 PANTHER PTHR30337 1 381 5.6E-62 T 19-04-2016 AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 SUPERFAMILY SSF56300 2 282 4.34E-47 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1714 de840954c38593c67f6afeabf8b9ba98 386 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 279 364 5.4E-7 T 19-04-2016 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 PANTHER PTHR10192 7 192 4.2E-50 T 19-04-2016 AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 SUPERFAMILY SSF54690 173 304 3.92E-37 T 19-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 SUPERFAMILY SSF53218 4 152 7.2E-36 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 139 4.7E-26 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 64 77 - T 19-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 Gene3D G3DSA:3.90.1170.40 169 304 8.9E-43 T 19-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 Pfam PF02391 MoaE protein 174 286 4.7E-33 T 19-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 Pfam PF00994 Probable molybdopterin binding domain 7 140 6.0E-24 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 SMART SM00852 6 148 3.8E-13 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8521 7316b03a5c2c5260aa87c2d77d49ca39 306 Gene3D G3DSA:3.40.980.10 3 154 8.7E-46 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_3954 3067108563ea960c9e686260c6cd0233 422 PANTHER PTHR30061 1 418 1.3E-53 T 19-04-2016 AMED_3954 3067108563ea960c9e686260c6cd0233 422 SUPERFAMILY SSF53850 19 418 1.89E-57 T 19-04-2016 AMED_3954 3067108563ea960c9e686260c6cd0233 422 Gene3D G3DSA:3.40.190.10 37 204 2.5E-30 T 19-04-2016 AMED_3954 3067108563ea960c9e686260c6cd0233 422 Pfam PF13416 Bacterial extracellular solute-binding protein 58 358 3.2E-30 T 19-04-2016 AMED_0330 25d548f786acaacf76fb43fecce1946e 169 PANTHER PTHR20935 3 87 6.8E-17 T 19-04-2016 AMED_0330 25d548f786acaacf76fb43fecce1946e 169 SUPERFAMILY SSF53254 5 150 1.56E-22 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_0330 25d548f786acaacf76fb43fecce1946e 169 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 84 5.7E-9 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0330 25d548f786acaacf76fb43fecce1946e 169 Gene3D G3DSA:3.40.50.1240 4 167 3.3E-50 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_3674 21335dc8aebe21ddb62246eccb409cdc 104 SUPERFAMILY SSF52266 2 103 6.11E-8 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3674 21335dc8aebe21ddb62246eccb409cdc 104 Gene3D G3DSA:3.40.50.1110 1 104 1.9E-14 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 PIRSF PIRSF010376 8 305 3.0E-79 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 Gene3D G3DSA:3.30.70.890 172 289 1.1E-24 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 10 279 1.7E-50 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 Pfam PF00288 GHMP kinases N terminal domain 95 153 2.0E-9 T 19-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 9 297 31.306 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 Pfam PF08544 GHMP kinases C terminal 212 284 1.1E-8 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 PANTHER PTHR20861 14 295 2.6E-77 T 19-04-2016 AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 SUPERFAMILY SSF54211 8 166 1.52E-42 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 PANTHER PTHR20861:SF2 14 295 2.6E-77 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 Gene3D G3DSA:3.30.230.10 9 167 1.5E-49 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_8246 71e6f22ac0d0c9e2b99132f34d8ab65d 320 SUPERFAMILY SSF55060 173 292 9.5E-23 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMED_2668 a591961ed52f004968b15d8a1c14391e 515 PANTHER PTHR10992 218 298 5.0E-26 T 19-04-2016 AMED_2668 a591961ed52f004968b15d8a1c14391e 515 Pfam PF08386 TAP-like protein 414 513 6.3E-22 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_2668 a591961ed52f004968b15d8a1c14391e 515 Gene3D G3DSA:3.40.50.1820 384 501 5.3E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2668 a591961ed52f004968b15d8a1c14391e 515 Gene3D G3DSA:3.40.50.1820 209 330 5.3E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2668 a591961ed52f004968b15d8a1c14391e 515 Gene3D G3DSA:3.40.50.1820 87 168 5.3E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2668 a591961ed52f004968b15d8a1c14391e 515 PANTHER PTHR10992:SF878 391 503 5.0E-26 T 19-04-2016 AMED_2668 a591961ed52f004968b15d8a1c14391e 515 SUPERFAMILY SSF53474 211 265 1.62E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2668 a591961ed52f004968b15d8a1c14391e 515 SUPERFAMILY SSF53474 113 169 1.62E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2668 a591961ed52f004968b15d8a1c14391e 515 SUPERFAMILY SSF53474 364 487 1.62E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2668 a591961ed52f004968b15d8a1c14391e 515 PANTHER PTHR10992 391 503 5.0E-26 T 19-04-2016 AMED_2668 a591961ed52f004968b15d8a1c14391e 515 PANTHER PTHR10992:SF878 218 298 5.0E-26 T 19-04-2016 AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 SMART SM00895 100 221 1.9E-25 T 19-04-2016 IPR011711 GntR, C-terminal AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 Gene3D G3DSA:1.10.10.10 3 72 1.3E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 Pfam PF07729 FCD domain 100 219 3.4E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 SMART SM00345 13 71 2.8E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 SUPERFAMILY SSF46785 5 75 3.41E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 7.7E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 Gene3D G3DSA:1.20.120.530 98 230 1.3E-27 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 PANTHER PTHR11751 98 116 2.7E-19 T 19-04-2016 AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 PANTHER PTHR11751 12 78 2.7E-19 T 19-04-2016 AMED_9071 a424c5d29c3de8f6d9542380e3c1dfaa 234 SUPERFAMILY SSF48008 99 228 1.23E-26 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 Pfam PF12770 CHAT domain 627 853 2.4E-29 T 19-04-2016 IPR024983 CHAT domain AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 Gene3D G3DSA:1.25.40.10 111 172 8.3E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 SUPERFAMILY SSF48452 111 228 6.33E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 Pfam PF13424 Tetratricopeptide repeat 159 226 3.1E-7 T 19-04-2016 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 Gene3D G3DSA:1.25.40.10 354 422 6.2E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 Gene3D G3DSA:1.25.40.10 173 308 6.2E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 SMART SM00028 155 188 0.0018 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 SMART SM00028 195 228 88.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_7625 e054493d98a6dab12cbcb23aa42a522a 869 SMART SM00028 13 46 380.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 Gene3D G3DSA:1.10.10.10 1 84 2.8E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6313 c3f2104c55301c960fbb504b576639e2 283 SUPERFAMILY SSF46785 1 84 8.09E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6313 c3f2104c55301c960fbb504b576639e2 283 PANTHER PTHR30346 1 280 7.9E-72 T 19-04-2016 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 PANTHER PTHR30346:SF0 1 280 7.9E-72 T 19-04-2016 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 SUPERFAMILY SSF53850 90 281 9.77E-23 T 19-04-2016 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 Gene3D G3DSA:3.40.190.10 90 199 1.6E-19 T 19-04-2016 AMED_6313 c3f2104c55301c960fbb504b576639e2 283 Pfam PF03466 LysR substrate binding domain 88 280 1.9E-24 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6313 c3f2104c55301c960fbb504b576639e2 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.2E-22 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0791 d65f5637a347b9ad2fb5d0bb219a8924 370 Pfam PF00069 Protein kinase domain 13 242 3.9E-30 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0791 d65f5637a347b9ad2fb5d0bb219a8924 370 SUPERFAMILY SSF56112 8 320 1.04E-53 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0791 d65f5637a347b9ad2fb5d0bb219a8924 370 Gene3D G3DSA:3.30.200.20 4 81 1.5E-15 T 19-04-2016 AMED_0791 d65f5637a347b9ad2fb5d0bb219a8924 370 Gene3D G3DSA:1.10.510.10 82 242 1.4E-33 T 19-04-2016 AMED_0791 d65f5637a347b9ad2fb5d0bb219a8924 370 PANTHER PTHR24362 10 254 3.3E-51 T 19-04-2016 AMED_0791 d65f5637a347b9ad2fb5d0bb219a8924 370 PANTHER PTHR24362:SF247 10 254 3.3E-51 T 19-04-2016 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 Gene3D G3DSA:1.10.10.10 127 228 9.9E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7577 03b49a0c5490c40b0d9235322148992b 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 225 1.3E-23 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 PANTHER PTHR26402:SF292 3 228 2.0E-85 T 19-04-2016 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 SUPERFAMILY SSF52172 4 126 9.39E-42 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7577 03b49a0c5490c40b0d9235322148992b 231 Gene3D G3DSA:3.40.50.2300 3 125 8.6E-40 T 19-04-2016 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 Pfam PF00072 Response regulator receiver domain 5 114 1.9E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 SMART SM00862 149 225 1.4E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 PANTHER PTHR26402 3 228 2.0E-85 T 19-04-2016 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 SMART SM00448 3 113 1.9E-42 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7577 03b49a0c5490c40b0d9235322148992b 231 SUPERFAMILY SSF46894 125 226 4.82E-29 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 SUPERFAMILY SSF52540 11 233 4.6E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4037 70ae579d29bf0b675024031f2b87913f 321 Pfam PF13732 Domain of unknown function (DUF4162) 224 314 7.3E-8 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 Gene3D G3DSA:3.40.50.300 7 234 1.2E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4037 70ae579d29bf0b675024031f2b87913f 321 PANTHER PTHR24220:SF0 304 320 5.8E-96 T 19-04-2016 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 PANTHER PTHR24220:SF0 13 234 5.8E-96 T 19-04-2016 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 SMART SM00382 36 219 4.6E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4037 70ae579d29bf0b675024031f2b87913f 321 Pfam PF00005 ABC transporter 28 170 1.5E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 19 316 8.8E-106 T 19-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- AMED_4037 70ae579d29bf0b675024031f2b87913f 321 PANTHER PTHR24220 304 320 5.8E-96 T 19-04-2016 AMED_4037 70ae579d29bf0b675024031f2b87913f 321 PANTHER PTHR24220 13 234 5.8E-96 T 19-04-2016 AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 Gene3D G3DSA:3.60.15.10 517 764 2.5E-23 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 Pfam PF00753 Metallo-beta-lactamase superfamily 535 716 5.8E-10 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 PANTHER PTHR30619 217 770 5.9E-128 T 19-04-2016 AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 252 421 5.9E-20 T 19-04-2016 IPR004477 ComEC/Rec2-related protein AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 SUPERFAMILY SSF56281 530 772 3.93E-35 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 Pfam PF13567 Domain of unknown function (DUF4131) 26 178 3.5E-10 T 19-04-2016 IPR025405 Domain of unknown function DUF4131 AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 PANTHER PTHR30619:SF2 217 770 5.9E-128 T 19-04-2016 AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 SMART SM00849 537 737 3.7E-11 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6689 9236edd5d329cbfd84df78f4ff542d54 788 Pfam PF03772 Competence protein 230 494 3.2E-51 T 19-04-2016 IPR004477 ComEC/Rec2-related protein AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Gene3D G3DSA:3.40.50.970 237 300 5.5E-44 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Gene3D G3DSA:3.40.50.970 5 189 5.5E-44 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2618 274a84033023d991fc29f7a1529f09ae 637 PANTHER PTHR11624:SF20 239 631 4.0E-245 T 19-04-2016 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 SUPERFAMILY SSF52922 486 618 8.25E-25 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Gene3D G3DSA:3.40.50.970 301 477 1.5E-59 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2618 274a84033023d991fc29f7a1529f09ae 637 PANTHER PTHR11624 17 212 4.0E-245 T 19-04-2016 IPR033247 Transketolase family AMED_2618 274a84033023d991fc29f7a1529f09ae 637 PANTHER PTHR11624 239 631 4.0E-245 T 19-04-2016 IPR033247 Transketolase family AMED_2618 274a84033023d991fc29f7a1529f09ae 637 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 6 618 8.9E-181 T 19-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 SMART SM00861 315 479 4.9E-59 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 3 620 40.473 T 19-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 ProSitePatterns PS00802 Transketolase signature 2. 421 437 - T 19-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 4 280 3.1E-102 T 19-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Pfam PF02780 Transketolase, C-terminal domain 497 611 2.1E-23 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMED_2618 274a84033023d991fc29f7a1529f09ae 637 SUPERFAMILY SSF52518 294 477 5.61E-56 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2618 274a84033023d991fc29f7a1529f09ae 637 ProSitePatterns PS00801 Transketolase signature 1. 29 48 - T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Gene3D G3DSA:3.40.50.920 487 618 7.9E-28 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 SUPERFAMILY SSF52518 3 344 7.8E-66 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2618 274a84033023d991fc29f7a1529f09ae 637 PANTHER PTHR11624:SF20 17 212 4.0E-245 T 19-04-2016 AMED_2618 274a84033023d991fc29f7a1529f09ae 637 Pfam PF02779 Transketolase, pyrimidine binding domain 314 477 1.6E-39 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_7124 001d2622e720e8d4160219befff674a1 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 243 1.3E-63 T 19-04-2016 AMED_7124 001d2622e720e8d4160219befff674a1 245 Gene3D G3DSA:3.40.50.720 4 244 3.4E-84 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7124 001d2622e720e8d4160219befff674a1 245 SUPERFAMILY SSF51735 8 244 3.1E-80 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 9.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 9.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 9.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7124 001d2622e720e8d4160219befff674a1 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7124 001d2622e720e8d4160219befff674a1 245 PANTHER PTHR24321:SF6 6 244 9.5E-51 T 19-04-2016 AMED_7124 001d2622e720e8d4160219befff674a1 245 PANTHER PTHR24321 6 244 9.5E-51 T 19-04-2016 AMED_1723 ebe85a11737717407c6ea91194199577 477 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 8 466 4.9E-225 T 19-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 Gene3D G3DSA:3.30.499.10 336 474 2.5E-59 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 19-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 89 102 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 140 155 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 202 215 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 350 361 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 126 139 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 216 229 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 406 419 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 293 307 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PRINTS PR00415 Aconitase family signature 115 123 3.4E-47 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PANTHER PTHR11670:SF38 9 314 6.0E-256 T 19-04-2016 AMED_1723 ebe85a11737717407c6ea91194199577 477 PANTHER PTHR11670:SF38 334 466 6.0E-256 T 19-04-2016 AMED_1723 ebe85a11737717407c6ea91194199577 477 Gene3D G3DSA:3.40.1060.10 160 295 9.7E-42 T 19-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 Pfam PF00330 Aconitase family (aconitate hydratase) 13 464 5.4E-154 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 Gene3D G3DSA:3.30.499.10 7 159 9.3E-24 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 ProSitePatterns PS00450 Aconitase family signature 1. 346 362 - T 19-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 SUPERFAMILY SSF53732 8 472 1.03E-163 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 7 473 60.513 T 19-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PANTHER PTHR11670 9 314 6.0E-256 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1723 ebe85a11737717407c6ea91194199577 477 PANTHER PTHR11670 334 466 6.0E-256 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 SUPERFAMILY SSF53474 3 473 9.74E-95 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 PRINTS PR00878 Cholinesterase signature 110 139 7.6E-5 T 19-04-2016 IPR000997 Cholinesterase GO:0004104 AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 PRINTS PR00878 Cholinesterase signature 415 427 7.6E-5 T 19-04-2016 IPR000997 Cholinesterase GO:0004104 AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 PANTHER PTHR11559 2 470 6.1E-113 T 19-04-2016 AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 Pfam PF00135 Carboxylesterase family 3 462 2.6E-84 T 19-04-2016 IPR002018 Carboxylesterase, type B AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 PANTHER PTHR11559:SF142 2 470 6.1E-113 T 19-04-2016 AMED_3038 b991b9a433a7b10684c0df383f03e64e 476 Gene3D G3DSA:3.40.50.1820 3 470 1.6E-108 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 60 120 0.009 T 19-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 PANTHER PTHR30328 7 200 1.1E-40 T 19-04-2016 AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 SUPERFAMILY SSF46689 9 75 3.28E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 PANTHER PTHR30328:SF19 7 200 1.1E-40 T 19-04-2016 AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 SUPERFAMILY SSF48498 84 195 1.33E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 Gene3D G3DSA:1.10.10.60 7 61 8.4E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 Gene3D G3DSA:1.10.357.10 62 196 1.3E-44 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8266 2a91026d1e7339b8bea1b60194c76a51 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 1.1E-4 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6275 2c168a606d186578ab3a29285f4ddda0 348 Gene3D G3DSA:3.20.20.140 13 338 8.0E-89 T 19-04-2016 AMED_6275 2c168a606d186578ab3a29285f4ddda0 348 SUPERFAMILY SSF51556 13 339 9.61E-71 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6275 2c168a606d186578ab3a29285f4ddda0 348 PANTHER PTHR11409:SF36 10 339 6.2E-113 T 19-04-2016 AMED_6275 2c168a606d186578ab3a29285f4ddda0 348 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 17 333 2.8E-77 T 19-04-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 AMED_6275 2c168a606d186578ab3a29285f4ddda0 348 Pfam PF00962 Adenosine/AMP deaminase 17 332 3.4E-72 T 19-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 AMED_6275 2c168a606d186578ab3a29285f4ddda0 348 PANTHER PTHR11409 10 339 6.2E-113 T 19-04-2016 AMED_1193 5acd03158ab98c07f4725feaba00e880 468 PANTHER PTHR23355 17 351 1.6E-48 T 19-04-2016 AMED_1193 5acd03158ab98c07f4725feaba00e880 468 Pfam PF00773 RNB domain 46 352 1.0E-47 T 19-04-2016 AMED_1193 5acd03158ab98c07f4725feaba00e880 468 SUPERFAMILY SSF50249 10 408 1.09E-91 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1193 5acd03158ab98c07f4725feaba00e880 468 SMART SM00955 46 364 7.9E-68 T 19-04-2016 AMED_8910 0eb3c9e3a656ff81a92828e3a148c4cc 185 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 40 177 5.4E-24 T 19-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AMED_8910 0eb3c9e3a656ff81a92828e3a148c4cc 185 SMART SM00047 23 183 2.2E-22 T 19-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AMED_8910 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 160 178 1.3E-9 T 19-04-2016 AMED_8910 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 118 139 1.3E-9 T 19-04-2016 AMED_8910 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 53 71 1.3E-9 T 19-04-2016 AMED_8910 0eb3c9e3a656ff81a92828e3a148c4cc 185 PRINTS PR01002 Flagellar protein FlgJ signature 96 117 1.3E-9 T 19-04-2016 AMED_0344 5730ab4f3e5110a46fc4c8e471f09d8c 247 PANTHER PTHR11516:SF25 3 247 2.2E-32 T 19-04-2016 AMED_0344 5730ab4f3e5110a46fc4c8e471f09d8c 247 PANTHER PTHR11516 3 247 2.2E-32 T 19-04-2016 AMED_0344 5730ab4f3e5110a46fc4c8e471f09d8c 247 SUPERFAMILY SSF52518 3 244 1.43E-41 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0344 5730ab4f3e5110a46fc4c8e471f09d8c 247 Gene3D G3DSA:3.40.50.970 4 246 8.1E-40 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0344 5730ab4f3e5110a46fc4c8e471f09d8c 247 Pfam PF00676 Dehydrogenase E1 component 29 78 4.1E-5 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_0344 5730ab4f3e5110a46fc4c8e471f09d8c 247 Pfam PF00676 Dehydrogenase E1 component 84 186 2.1E-18 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_3936 c4146a8d979c8ccaf130db18526f1d7c 187 PANTHER PTHR35525 18 184 1.0E-21 T 19-04-2016 AMED_3936 c4146a8d979c8ccaf130db18526f1d7c 187 Pfam PF07336 Putative stress-induced transcription regulator 13 135 4.2E-18 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_3936 c4146a8d979c8ccaf130db18526f1d7c 187 SUPERFAMILY SSF160904 7 181 1.44E-40 T 19-04-2016 AMED_3936 c4146a8d979c8ccaf130db18526f1d7c 187 Pfam PF11706 CGNR zinc finger 141 181 4.6E-15 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_3936 c4146a8d979c8ccaf130db18526f1d7c 187 Gene3D G3DSA:1.10.3300.10 7 184 3.5E-40 T 19-04-2016 IPR023286 ABATE domain AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 SUPERFAMILY SSF53335 21 195 1.21E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 PANTHER PTHR31760:SF0 3 213 3.3E-52 T 19-04-2016 AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 PANTHER PTHR31760 3 213 3.3E-52 T 19-04-2016 AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 Gene3D G3DSA:3.40.50.150 19 214 1.6E-61 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 Pfam PF02527 rRNA small subunit methyltransferase G 23 197 2.0E-48 T 19-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 189 1.2E-38 T 19-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMED_9361 3e0007d5bf1c2f171542f01e2f79dd91 227 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 14 210 23.651 T 19-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMED_2562 4ab0005163fd86f1a024cdbbd7063d8d 418 PIRSF PIRSF006060 3 413 3.2E-68 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2562 4ab0005163fd86f1a024cdbbd7063d8d 418 Pfam PF13520 Amino acid permease 23 373 2.2E-38 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2562 4ab0005163fd86f1a024cdbbd7063d8d 418 PANTHER PTHR11785:SF366 16 418 5.5E-91 T 19-04-2016 AMED_2562 4ab0005163fd86f1a024cdbbd7063d8d 418 PANTHER PTHR11785 16 418 5.5E-91 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 69 82 - T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 Gene3D G3DSA:3.40.50.720 167 385 1.1E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 Gene3D G3DSA:3.40.192.10 9 125 3.7E-21 T 19-04-2016 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 SUPERFAMILY SSF51735 158 387 6.57E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 158 383 5.0E-33 T 19-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 SUPERFAMILY SSF53223 9 129 2.4E-20 T 19-04-2016 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 SMART SM00839 159 390 2.6E-57 T 19-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 PANTHER PTHR11606 19 323 7.9E-32 T 19-04-2016 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 18 111 1.8E-9 T 19-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 AMED_1346 9c86c9c196ee4a0963407fb599caa75a 390 PIRSF PIRSF000185 2 390 9.0E-82 T 19-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 PANTHER PTHR23501 18 499 3.2E-154 T 19-04-2016 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 Pfam PF07690 Major Facilitator Superfamily 33 427 5.1E-50 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 440 5.7E-69 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 SUPERFAMILY SSF103473 264 485 4.05E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 SUPERFAMILY SSF103473 16 210 4.05E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 Gene3D G3DSA:1.20.1250.20 20 213 7.3E-33 T 19-04-2016 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 Gene3D G3DSA:1.20.1250.20 285 485 9.7E-14 T 19-04-2016 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 PANTHER PTHR23501:SF69 18 499 3.2E-154 T 19-04-2016 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 PRINTS PR01035 Tetracycline resistance protein signature 29 45 4.7E-7 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 PRINTS PR01035 Tetracycline resistance protein signature 154 176 4.7E-7 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 PRINTS PR01035 Tetracycline resistance protein signature 365 388 4.7E-7 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_1087 cb2c4ddca2e80506b3ed58450b31556e 499 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 Gene3D G3DSA:3.40.50.720 2 195 3.3E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 317 3.1E-54 T 19-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 SUPERFAMILY SSF51735 2 192 7.09E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 PANTHER PTHR21708 1 319 1.5E-71 T 19-04-2016 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 Gene3D G3DSA:1.10.1040.10 198 317 1.1E-25 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 SUPERFAMILY SSF48179 198 317 1.8E-25 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 171 1.2E-19 T 19-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 198 317 2.9E-25 T 19-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_7269 f3dbcb1b96861a9618f0dc1257d26c84 327 PANTHER PTHR21708:SF29 1 319 1.5E-71 T 19-04-2016 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 Pfam PF00072 Response regulator receiver domain 13 120 7.8E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 SUPERFAMILY SSF46894 132 226 2.21E-24 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 PANTHER PTHR26402 11 226 3.9E-74 T 19-04-2016 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 SMART SM00862 154 226 1.9E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 SMART SM00448 11 119 5.9E-32 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 SUPERFAMILY SSF52172 7 131 1.85E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 Gene3D G3DSA:3.40.50.2300 5 127 3.3E-32 T 19-04-2016 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 226 5.5E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 PANTHER PTHR26402:SF578 11 226 3.9E-74 T 19-04-2016 AMED_2364 0e6f2d178c46b95b89336f5ad4218d99 233 Gene3D G3DSA:1.10.10.10 131 226 8.9E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:1.25.40.10 432 577 7.9E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 SMART SM00421 878 935 4.6E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 PANTHER PTHR16305 11 438 1.6E-37 T 19-04-2016 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 PANTHER PTHR16305 657 861 1.6E-37 T 19-04-2016 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 Pfam PF13191 AAA ATPase domain 11 169 3.0E-24 T 19-04-2016 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF52540 11 74 2.67E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF52540 112 218 2.67E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 895 911 8.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 911 923 8.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 881 895 8.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:1.10.10.10 870 939 2.3E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF48452 506 693 4.55E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 Pfam PF00196 Bacterial regulatory proteins, luxR family 879 934 1.4E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 ProSitePatterns PS00622 LuxR-type HTH domain signature. 895 922 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 SUPERFAMILY SSF46894 872 939 1.12E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 SMART SM00382 32 195 0.0039 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:3.40.50.300 11 74 1.6E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3490 aa25fc32f4929183aa3a91e8ee58a271 943 Gene3D G3DSA:3.40.50.300 112 175 1.6E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 ProSitePatterns PS00591 Glycosyl hydrolases family 10 (GH10) active site. 557 567 - T 19-04-2016 IPR031158 Glycosyl hydrolases family 10, active site MetaCyc: PWY-6784 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 SMART SM00633 375 631 2.1E-131 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF53474 27 108 2.39E-8 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 SMART SM00637 658 741 8.8E-14 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 PANTHER PTHR31490 327 632 2.0E-128 T 19-04-2016 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 Gene3D G3DSA:3.40.50.1820 19 306 2.8E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 523 535 7.9E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 493 504 7.9E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 406 418 7.9E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 PRINTS PR00134 Glycosyl hydrolase family 10 signature 448 459 7.9E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 Pfam PF10503 Esterase PHB depolymerase 51 254 1.5E-18 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF53474 132 335 5.81E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 Pfam PF00331 Glycosyl hydrolase family 10 334 629 6.3E-107 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 Gene3D G3DSA:3.20.20.80 335 633 2.9E-112 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF49384 656 741 3.7E-15 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 Gene3D G3DSA:2.60.40.290 656 741 2.3E-18 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 SUPERFAMILY SSF51445 329 632 8.52E-107 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5880 5f6a25a0d5f7519bf578be4920138ace 744 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 48 261 6.7E-43 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_4501 e394332521ccf391e1d823db32fa085c 314 PRINTS PR00990 Ribokinase signature 217 228 2.0E-5 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_4501 e394332521ccf391e1d823db32fa085c 314 PRINTS PR00990 Ribokinase signature 31 50 2.0E-5 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_4501 e394332521ccf391e1d823db32fa085c 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_4501 e394332521ccf391e1d823db32fa085c 314 PANTHER PTHR10584 2 300 4.5E-85 T 19-04-2016 AMED_4501 e394332521ccf391e1d823db32fa085c 314 SUPERFAMILY SSF53613 2 291 5.92E-67 T 19-04-2016 IPR029056 Ribokinase-like AMED_4501 e394332521ccf391e1d823db32fa085c 314 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 294 2.3E-101 T 19-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMED_4501 e394332521ccf391e1d823db32fa085c 314 Pfam PF00294 pfkB family carbohydrate kinase 20 290 2.6E-45 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_4501 e394332521ccf391e1d823db32fa085c 314 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 295 8.6E-100 T 19-04-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 AMED_4501 e394332521ccf391e1d823db32fa085c 314 PIRSF PIRSF000535 1 298 2.2E-76 T 19-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMED_4501 e394332521ccf391e1d823db32fa085c 314 Gene3D G3DSA:3.40.1190.20 32 294 3.8E-81 T 19-04-2016 IPR029056 Ribokinase-like AMED_4501 e394332521ccf391e1d823db32fa085c 314 PANTHER PTHR10584:SF170 2 300 4.5E-85 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 77 4.1E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:3.40.50.300 260 301 9.4E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 PRINTS PR00364 Disease resistance protein signature 366 380 1.0E-9 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 PRINTS PR00364 Disease resistance protein signature 289 304 1.0E-9 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 PRINTS PR00364 Disease resistance protein signature 450 464 1.0E-9 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 PANTHER PTHR22845:SF4 141 598 5.9E-96 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.25.40.10 663 980 1.0E-27 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF48452 91 260 1.14E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF48452 693 821 8.85E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF48452 801 972 8.1E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 PANTHER PTHR22845 141 598 5.9E-96 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF46894 2 89 3.4E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:3.40.50.300 302 341 2.1E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF00931 NB-ARC domain 271 509 4.8E-15 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM01043 96 240 3.7E-50 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Gene3D G3DSA:1.10.10.10 9 79 8.1E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 190 223 320.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 783 816 40.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 703 736 0.0053 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 943 976 250.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 823 856 120.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00028 743 776 130.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF13424 Tetratricopeptide repeat 705 774 1.7E-12 T 19-04-2016 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SUPERFAMILY SSF52540 255 515 4.46E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 SMART SM00862 15 89 7.1E-12 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6389 07677d4a465026f31d1085f74e9a7c9f 998 Pfam PF03704 Bacterial transcriptional activator domain 96 240 2.9E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 2 158 1.0E-43 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 SUPERFAMILY SSF88946 3 90 3.92E-11 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 Gene3D G3DSA:1.10.1740.10 3 70 3.0E-11 T 19-04-2016 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 Gene3D G3DSA:1.10.10.10 100 158 6.8E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 PANTHER PTHR30173 3 159 2.6E-22 T 19-04-2016 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 SUPERFAMILY SSF88659 93 155 1.27E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 156 3.7E-18 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 Pfam PF04542 Sigma-70 region 2 9 70 1.3E-6 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5099 0695ad7b6c13e516de1c0de815397d1b 165 Pfam PF08281 Sigma-70, region 4 102 153 2.0E-14 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PANTHER PTHR24322 141 171 3.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PANTHER PTHR24322 6 125 3.5E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 231 2.9E-33 T 19-04-2016 AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 SUPERFAMILY SSF51735 3 233 1.52E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 4.9E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 4.9E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.9E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 4.9E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 4.9E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PANTHER PTHR24322:SF551 141 171 3.5E-22 T 19-04-2016 AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 PANTHER PTHR24322:SF551 6 125 3.5E-22 T 19-04-2016 AMED_6702 84533470156ffa9bfe0248fcb1cdb5da 237 Gene3D G3DSA:3.40.50.720 3 233 9.9E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 6.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 SUPERFAMILY SSF48498 85 197 5.44E-22 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 SUPERFAMILY SSF46689 3 76 6.67E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 Pfam PF16925 Bacterial transcriptional repressor C-terminal 107 178 5.5E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 PANTHER PTHR30055 1 195 7.5E-40 T 19-04-2016 AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 Gene3D G3DSA:1.10.357.10 97 198 1.9E-18 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 Gene3D G3DSA:1.10.10.60 1 68 1.6E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3564 2c283d8c3089a3c8644ee8d99eb5d927 201 PANTHER PTHR30055:SF44 1 195 7.5E-40 T 19-04-2016 AMED_5916 aeb100b6a6e46decda198c28620d9dd7 453 Gene3D G3DSA:3.40.309.10 241 431 2.5E-60 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_5916 aeb100b6a6e46decda198c28620d9dd7 453 PANTHER PTHR11699:SF205 2 449 1.4E-213 T 19-04-2016 AMED_5916 aeb100b6a6e46decda198c28620d9dd7 453 SUPERFAMILY SSF53720 2 451 3.01E-138 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_5916 aeb100b6a6e46decda198c28620d9dd7 453 Gene3D G3DSA:3.40.605.10 2 240 6.7E-66 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_5916 aeb100b6a6e46decda198c28620d9dd7 453 PANTHER PTHR11699 2 449 1.4E-213 T 19-04-2016 AMED_5916 aeb100b6a6e46decda198c28620d9dd7 453 Pfam PF00171 Aldehyde dehydrogenase family 3 449 8.0E-132 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_2421 c743a337366206f814eb3b2703a06c49 340 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 204 330 1.3E-26 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2421 c743a337366206f814eb3b2703a06c49 340 Gene3D G3DSA:1.20.140.10 203 338 3.0E-32 T 19-04-2016 AMED_2421 c743a337366206f814eb3b2703a06c49 340 SUPERFAMILY SSF56645 1 174 7.19E-25 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2421 c743a337366206f814eb3b2703a06c49 340 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 113 1.7E-13 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2421 c743a337366206f814eb3b2703a06c49 340 PANTHER PTHR10909:SF302 1 323 7.7E-66 T 19-04-2016 AMED_2421 c743a337366206f814eb3b2703a06c49 340 SUPERFAMILY SSF47203 202 336 8.7E-34 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2421 c743a337366206f814eb3b2703a06c49 340 Gene3D G3DSA:1.10.540.10 1 114 4.4E-18 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2421 c743a337366206f814eb3b2703a06c49 340 PANTHER PTHR10909 1 323 7.7E-66 T 19-04-2016 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 SMART SM00345 26 85 4.9E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 PANTHER PTHR11751:SF10 84 464 8.7E-95 T 19-04-2016 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 9.6E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 9.6E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 PANTHER PTHR11751 84 464 8.7E-95 T 19-04-2016 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 Gene3D G3DSA:3.40.640.10 136 355 4.3E-52 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 SUPERFAMILY SSF53383 98 464 3.58E-80 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 SUPERFAMILY SSF46785 15 89 2.55E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 Gene3D G3DSA:1.10.10.10 19 87 4.4E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 85 3.2E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7011 2bf02c6477bd14b3735131c387a65d25 465 Pfam PF00155 Aminotransferase class I and II 124 406 3.2E-20 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_6839 8f78d0897cd2d144792fc5098027db47 458 SUPERFAMILY SSF51905 7 190 1.91E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6839 8f78d0897cd2d144792fc5098027db47 458 SUPERFAMILY SSF51905 306 392 1.91E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6839 8f78d0897cd2d144792fc5098027db47 458 Gene3D G3DSA:3.50.50.60 10 197 2.9E-15 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6839 8f78d0897cd2d144792fc5098027db47 458 Gene3D G3DSA:3.50.50.60 308 346 2.9E-15 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6839 8f78d0897cd2d144792fc5098027db47 458 PANTHER PTHR10617:SF114 8 458 9.4E-89 T 19-04-2016 AMED_6839 8f78d0897cd2d144792fc5098027db47 458 PANTHER PTHR10617 8 458 9.4E-89 T 19-04-2016 AMED_6319 dc37251af08109b10053e9507c519970 89 SUPERFAMILY SSF47060 3 89 7.95E-35 T 19-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 AMED_6319 dc37251af08109b10053e9507c519970 89 PANTHER PTHR23321 2 89 1.7E-38 T 19-04-2016 AMED_6319 dc37251af08109b10053e9507c519970 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.405 T 19-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMED_6319 dc37251af08109b10053e9507c519970 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 8.0E-21 T 19-04-2016 AMED_6319 dc37251af08109b10053e9507c519970 89 Gene3D G3DSA:1.10.287.10 3 89 1.3E-37 T 19-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 AMED_6319 dc37251af08109b10053e9507c519970 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 19-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6319 dc37251af08109b10053e9507c519970 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 9.0E-39 T 19-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMED_6319 dc37251af08109b10053e9507c519970 89 SMART SM01387 8 88 2.9E-51 T 19-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6319 dc37251af08109b10053e9507c519970 89 Pfam PF00312 Ribosomal protein S15 8 88 1.8E-36 T 19-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 160 167 - T 19-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PANTHER PTHR11404:SF27 1 197 2.2E-109 T 19-04-2016 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 120 128 6.6E-19 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 6.6E-19 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 6.6E-19 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 158 170 6.6E-19 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PRINTS PR01703 Manganese superoxide dismutase signature 67 80 6.6E-19 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PIRSF PIRSF000349 1 202 1.4E-69 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 Gene3D G3DSA:1.10.287.990 21 84 2.4E-21 T 19-04-2016 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 84 8.9E-30 T 19-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 PANTHER PTHR11404 1 197 2.2E-109 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 SUPERFAMILY SSF46609 3 85 2.23E-29 T 19-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 SUPERFAMILY SSF54719 84 197 4.32E-41 T 19-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_8477 4bf6ed52de3a2ee46951fb555c7c4851 207 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 91 193 1.8E-33 T 19-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 Pfam PF00106 short chain dehydrogenase 6 193 5.0E-47 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 SUPERFAMILY SSF51735 3 242 3.64E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 4.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 4.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PANTHER PTHR24322 9 136 3.8E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PANTHER PTHR24322 152 183 3.8E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.8E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.8E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.8E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.8E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.8E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 188 0.0059 T 19-04-2016 AMED_7803 866a9a44edf36e7a0e9f838c39f5352b 278 Gene3D G3DSA:3.40.50.720 4 249 2.7E-64 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3306 1156828946e8004a192aa8bba3ee27fe 158 SMART SM00347 29 129 3.9E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3306 1156828946e8004a192aa8bba3ee27fe 158 PANTHER PTHR33164 18 153 4.6E-18 T 19-04-2016 AMED_3306 1156828946e8004a192aa8bba3ee27fe 158 Pfam PF12802 MarR family 36 92 7.5E-13 T 19-04-2016 AMED_3306 1156828946e8004a192aa8bba3ee27fe 158 Gene3D G3DSA:1.10.10.10 16 141 1.8E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3306 1156828946e8004a192aa8bba3ee27fe 158 PANTHER PTHR33164:SF10 18 153 4.6E-18 T 19-04-2016 AMED_3306 1156828946e8004a192aa8bba3ee27fe 158 SUPERFAMILY SSF46785 16 144 3.31E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 PANTHER PTHR13789:SF246 4 354 8.1E-113 T 19-04-2016 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 PANTHER PTHR13789 4 354 8.1E-113 T 19-04-2016 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 Pfam PF01494 FAD binding domain 5 334 1.7E-17 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 Gene3D G3DSA:3.50.50.60 269 343 1.3E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 Gene3D G3DSA:3.50.50.60 3 174 1.3E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 1.9E-15 T 19-04-2016 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 1.9E-15 T 19-04-2016 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 1.9E-15 T 19-04-2016 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.9E-15 T 19-04-2016 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 SUPERFAMILY SSF51905 4 168 2.66E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4315 b62d5ea28a49d58f29e262ad08be4a9b 411 SUPERFAMILY SSF51905 268 372 2.66E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 PANTHER PTHR11351:SF3 6 315 1.3E-128 T 19-04-2016 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 Pfam PF00487 Fatty acid desaturase 60 276 4.8E-21 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 220 241 1.9E-18 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 60 82 1.9E-18 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 83 103 1.9E-18 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 PRINTS PR00075 Fatty acid desaturase family 1 signature 263 277 1.9E-18 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_8232 7ff739517fe0f6a79898bbea95043658 321 PANTHER PTHR11351 6 315 1.3E-128 T 19-04-2016 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 Gene3D G3DSA:1.10.287.610 100 152 1.6E-22 T 19-04-2016 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 42.091 T 19-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 224 2.8E-108 T 19-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PANTHER PTHR12534 1 266 8.4E-120 T 19-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 SUPERFAMILY SSF52313 6 228 6.41E-94 T 19-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.0E-39 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.0E-39 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.0E-39 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.0E-39 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.0E-39 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.0E-39 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 Gene3D G3DSA:3.40.50.10490 23 99 1.1E-68 T 19-04-2016 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 Gene3D G3DSA:3.40.50.10490 158 235 1.1E-68 T 19-04-2016 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 19-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMED_1973 01f2f8103e601ce9296bf73ec78c127a 291 Pfam PF00318 Ribosomal protein S2 9 224 6.6E-97 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 SUPERFAMILY SSF46785 13 97 1.12E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 SMART SM00418 17 96 1.7E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 PANTHER PTHR39168 14 237 9.0E-30 T 19-04-2016 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 Gene3D G3DSA:1.10.10.10 15 98 6.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 4.6E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 4.6E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 4.6E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 PANTHER PTHR39168:SF1 14 237 9.0E-30 T 19-04-2016 AMED_3222 fd6173209dbe1ecbc8c5d27800d22a2e 237 Pfam PF12840 Helix-turn-helix domain 19 76 1.1E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3274 9db732b1c348479a982d0b20c792e21d 141 Gene3D G3DSA:3.30.750.24 34 124 1.3E-17 T 19-04-2016 IPR002645 STAS domain AMED_3274 9db732b1c348479a982d0b20c792e21d 141 PANTHER PTHR33495 11 141 1.1E-14 T 19-04-2016 AMED_3274 9db732b1c348479a982d0b20c792e21d 141 Pfam PF13466 STAS domain 38 119 1.1E-10 T 19-04-2016 IPR002645 STAS domain AMED_3274 9db732b1c348479a982d0b20c792e21d 141 SUPERFAMILY SSF52091 34 124 2.75E-15 T 19-04-2016 IPR002645 STAS domain AMED_6016 080951139b161726a7d3565949b56dcb 217 SMART SM00895 82 202 9.4E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6016 080951139b161726a7d3565949b56dcb 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 6.5E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6016 080951139b161726a7d3565949b56dcb 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 6.5E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6016 080951139b161726a7d3565949b56dcb 217 SMART SM00345 14 72 5.4E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6016 080951139b161726a7d3565949b56dcb 217 Pfam PF07729 FCD domain 82 201 1.0E-27 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6016 080951139b161726a7d3565949b56dcb 217 PANTHER PTHR11751 9 98 6.0E-24 T 19-04-2016 AMED_6016 080951139b161726a7d3565949b56dcb 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 2.3E-19 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6016 080951139b161726a7d3565949b56dcb 217 Gene3D G3DSA:1.20.120.530 79 207 3.3E-29 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_6016 080951139b161726a7d3565949b56dcb 217 SUPERFAMILY SSF46785 11 98 6.93E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6016 080951139b161726a7d3565949b56dcb 217 SUPERFAMILY SSF48008 79 208 6.02E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_6016 080951139b161726a7d3565949b56dcb 217 Gene3D G3DSA:1.10.10.10 11 73 3.2E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1853 5d3ebb2569061133a4ad8d9204c29f48 420 SUPERFAMILY SSF53850 20 415 1.38E-64 T 19-04-2016 AMED_1853 5d3ebb2569061133a4ad8d9204c29f48 420 Gene3D G3DSA:3.40.190.10 311 351 1.7E-27 T 19-04-2016 AMED_1853 5d3ebb2569061133a4ad8d9204c29f48 420 Gene3D G3DSA:3.40.190.10 43 149 1.7E-27 T 19-04-2016 AMED_1853 5d3ebb2569061133a4ad8d9204c29f48 420 PANTHER PTHR30061 1 420 1.8E-57 T 19-04-2016 AMED_1853 5d3ebb2569061133a4ad8d9204c29f48 420 Pfam PF13416 Bacterial extracellular solute-binding protein 58 359 6.2E-36 T 19-04-2016 AMED_1853 5d3ebb2569061133a4ad8d9204c29f48 420 Gene3D G3DSA:3.40.190.10 150 310 4.5E-33 T 19-04-2016 AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 PANTHER PTHR10066 169 306 1.6E-124 T 19-04-2016 AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 SUPERFAMILY SSF49785 37 157 7.8E-32 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 SUPERFAMILY SSF51445 175 468 5.28E-36 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 PANTHER PTHR10066 325 485 1.6E-124 T 19-04-2016 AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 259 386 1.8E-6 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 Pfam PF00754 F5/8 type C domain 40 152 3.1E-27 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 PANTHER PTHR10066:SF73 325 485 1.6E-124 T 19-04-2016 AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 PANTHER PTHR10066:SF73 169 306 1.6E-124 T 19-04-2016 AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 Gene3D G3DSA:2.60.120.260 31 161 1.7E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4555 413d24c114c2fd497bf88c0b78b72f56 574 Gene3D G3DSA:3.20.20.80 176 466 3.0E-28 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0528 e3cfc702f398de77e75564f414217619 174 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 146 26.105 T 19-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 AMED_0528 e3cfc702f398de77e75564f414217619 174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 53 64 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_0528 e3cfc702f398de77e75564f414217619 174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 98 109 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_0528 e3cfc702f398de77e75564f414217619 174 Gene3D G3DSA:1.10.1060.10 4 112 5.1E-19 T 19-04-2016 AMED_0528 e3cfc702f398de77e75564f414217619 174 SUPERFAMILY SSF54862 26 141 3.98E-25 T 19-04-2016 AMED_0528 e3cfc702f398de77e75564f414217619 174 Pfam PF12838 4Fe-4S dicluster domain 52 110 4.2E-11 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_0528 e3cfc702f398de77e75564f414217619 174 PANTHER PTHR10849 1 139 2.6E-52 T 19-04-2016 AMED_0528 e3cfc702f398de77e75564f414217619 174 PANTHER PTHR10849:SF13 1 139 2.6E-52 T 19-04-2016 AMED_0528 e3cfc702f398de77e75564f414217619 174 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 9 136 3.1E-37 T 19-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.9E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.9E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.9E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.9E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.9E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.9E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 Gene3D G3DSA:3.40.50.720 4 250 4.2E-80 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 1.0E-59 T 19-04-2016 AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PANTHER PTHR24322 15 142 6.3E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PANTHER PTHR24322 158 188 6.3E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 SUPERFAMILY SSF51735 10 250 2.05E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2305 ab6a4da30c28a959f145fe8242f993ad 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 183 0.0011 T 19-04-2016 AMED_1167 69d1ed95e4d3421475e08ddc337ab160 206 PANTHER PTHR35802:SF1 3 205 8.6E-17 T 19-04-2016 AMED_1167 69d1ed95e4d3421475e08ddc337ab160 206 Gene3D G3DSA:2.30.110.10 1 204 2.3E-38 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1167 69d1ed95e4d3421475e08ddc337ab160 206 Pfam PF04299 Putative FMN-binding domain 5 163 1.2E-25 T 19-04-2016 IPR007396 Transcriptional regulator PAI 2-type AMED_1167 69d1ed95e4d3421475e08ddc337ab160 206 SUPERFAMILY SSF50475 10 183 1.5E-30 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1167 69d1ed95e4d3421475e08ddc337ab160 206 PANTHER PTHR35802 3 205 8.6E-17 T 19-04-2016 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 220 1.0E-21 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 SUPERFAMILY SSF47203 234 398 1.11E-25 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 396 1.2E-28 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 SUPERFAMILY SSF56645 2 245 5.89E-73 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Gene3D G3DSA:1.20.140.10 224 405 1.2E-35 T 19-04-2016 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 124 4.7E-24 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Gene3D G3DSA:1.10.540.10 1 125 8.9E-28 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 Gene3D G3DSA:2.40.110.10 127 223 5.2E-34 T 19-04-2016 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 PANTHER PTHR10909:SF276 1 404 4.9E-134 T 19-04-2016 AMED_3827 797c1da6dc6a3940c0b01cc1dcd7e24f 410 PANTHER PTHR10909 1 404 4.9E-134 T 19-04-2016 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 73 89 1.2E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 73 1.2E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 Pfam PF07729 FCD domain 109 230 6.4E-22 T 19-04-2016 IPR011711 GntR, C-terminal AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 SUPERFAMILY SSF46785 33 103 1.49E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 38 99 4.7E-19 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 Gene3D G3DSA:1.10.10.10 25 99 4.7E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 PANTHER PTHR11751 36 125 1.9E-37 T 19-04-2016 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 PANTHER PTHR11751:SF403 36 125 1.9E-37 T 19-04-2016 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 SMART SM00345 41 99 2.8E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 SMART SM00895 109 231 4.6E-17 T 19-04-2016 IPR011711 GntR, C-terminal AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 SUPERFAMILY SSF48008 105 237 7.59E-24 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_4575 27e4f48510f6df5163ee557cb2acc818 245 Gene3D G3DSA:1.20.120.530 102 238 8.2E-25 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 SUPERFAMILY SSF51735 118 248 4.28E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 SUPERFAMILY SSF50129 4 150 7.0E-34 T 19-04-2016 IPR011032 GroES-like AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Pfam PF13602 Zinc-binding dehydrogenase 191 304 3.0E-14 T 19-04-2016 AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 SMART SM00829 11 304 3.6E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Gene3D G3DSA:3.90.180.10 4 147 8.8E-40 T 19-04-2016 IPR011032 GroES-like AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Gene3D G3DSA:3.40.50.720 148 240 1.9E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 PANTHER PTHR11695 17 306 2.0E-68 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3810 ec5501c23f5b6e7203eb3dd0e5e277b2 307 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 92 5.0E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Gene3D G3DSA:3.40.190.10 120 223 1.1E-24 T 19-04-2016 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 253 1.2E-48 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Gene3D G3DSA:3.40.190.10 38 119 1.4E-25 T 19-04-2016 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 Gene3D G3DSA:3.40.190.10 224 256 1.4E-25 T 19-04-2016 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 SMART SM00062 39 263 4.4E-58 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 PANTHER PTHR18966 58 251 1.9E-26 T 19-04-2016 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 62 75 - T 19-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 PANTHER PTHR18966:SF191 58 251 1.9E-26 T 19-04-2016 AMED_1285 a21fcf4eaa540fabb8dc7d9c37cdb28d 276 SUPERFAMILY SSF53850 2 254 1.04E-52 T 19-04-2016 AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 Gene3D G3DSA:1.20.1250.20 259 416 1.3E-16 T 19-04-2016 AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 Gene3D G3DSA:1.20.1250.20 498 524 1.3E-16 T 19-04-2016 AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 Gene3D G3DSA:1.20.1250.20 6 181 9.7E-17 T 19-04-2016 AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 SUPERFAMILY SSF103473 496 527 2.44E-44 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 SUPERFAMILY SSF103473 244 415 2.44E-44 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 SUPERFAMILY SSF103473 3 198 2.44E-44 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 Pfam PF07690 Major Facilitator Superfamily 3 406 6.5E-29 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 PANTHER PTHR23501 449 527 1.9E-76 T 19-04-2016 AMED_5083 2c1a9d809fc50e96791dafba59a763f3 539 PANTHER PTHR23501 1 427 1.9E-76 T 19-04-2016 AMED_7980 2a7565c5656443ad35d6027c2c2fa56d 294 SUPERFAMILY SSF89392 46 275 1.41E-9 T 19-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 Gene3D G3DSA:1.20.1220.12 415 524 1.4E-27 T 19-04-2016 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 PANTHER PTHR21631 1 529 5.2E-264 T 19-04-2016 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 22 528 1.2E-235 T 19-04-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 ProSitePatterns PS00510 Malate synthase signature. 266 281 - T 19-04-2016 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 Gene3D G3DSA:3.20.20.360 72 414 1.4E-118 T 19-04-2016 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 Pfam PF01274 Malate synthase 11 528 1.1E-191 T 19-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 SUPERFAMILY SSF51645 6 530 7.85E-183 T 19-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 PANTHER PTHR21631:SF1 1 529 5.2E-264 T 19-04-2016 AMED_1639 ef3b2aa59e3183eb3411e4c8a19408b3 535 PIRSF PIRSF001363 2 532 3.1E-238 T 19-04-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_7241 701f0324e67a5725f3187cfd53813b6d 136 SUPERFAMILY SSF46785 29 128 2.99E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7241 701f0324e67a5725f3187cfd53813b6d 136 Gene3D G3DSA:1.10.10.10 30 132 2.9E-42 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7241 701f0324e67a5725f3187cfd53813b6d 136 Pfam PF01638 HxlR-like helix-turn-helix 37 122 1.6E-27 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_7241 701f0324e67a5725f3187cfd53813b6d 136 PANTHER PTHR33204 30 132 1.3E-38 T 19-04-2016 AMED_7241 701f0324e67a5725f3187cfd53813b6d 136 PANTHER PTHR33204:SF15 30 132 1.3E-38 T 19-04-2016 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 PANTHER PTHR22981 1 289 8.8E-102 T 19-04-2016 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 SUPERFAMILY SSF51735 1 162 5.05E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4581 3856a6c235814778fd07254b51b7c17b 295 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 2 289 6.9E-105 T 19-04-2016 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 Gene3D G3DSA:3.40.50.720 1 162 3.0E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4581 3856a6c235814778fd07254b51b7c17b 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 19-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 Gene3D G3DSA:1.10.1040.10 164 289 7.2E-38 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 3.4E-34 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 SUPERFAMILY SSF48179 162 289 2.27E-36 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 PIRSF PIRSF000103 1 291 7.3E-78 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_4581 3856a6c235814778fd07254b51b7c17b 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 2.2E-52 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 19-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 PANTHER PTHR15184:SF8 1 475 2.8E-298 T 19-04-2016 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 Gene3D G3DSA:3.40.50.300 88 354 2.6E-97 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 PANTHER PTHR15184 1 475 2.8E-298 T 19-04-2016 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 Gene3D G3DSA:2.40.10.170 4 86 2.3E-27 T 19-04-2016 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 13 84 2.9E-19 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 Hamap MF_01347 ATP synthase subunit beta [atpB]. 8 472 53.696 T 19-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 SUPERFAMILY SSF50615 10 86 1.52E-22 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 10 471 1.1E-239 T 19-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 141 354 2.6E-63 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 SUPERFAMILY SSF47917 357 472 8.37E-48 T 19-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 SMART SM00382 153 338 3.0E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 SUPERFAMILY SSF52540 88 360 5.67E-84 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7775 48049abcab41f7172d446c2dd2915c3e 475 Gene3D G3DSA:1.10.1140.10 357 474 2.4E-47 T 19-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_5002 a04d39db131887e8f51803968a643e03 101 PANTHER PTHR19836 1 101 9.6E-51 T 19-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5002 a04d39db131887e8f51803968a643e03 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.304 T 19-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid AMED_5002 a04d39db131887e8f51803968a643e03 101 PANTHER PTHR19836:SF21 1 101 9.6E-51 T 19-04-2016 AMED_5002 a04d39db131887e8f51803968a643e03 101 SUPERFAMILY SSF57716 2 101 5.23E-31 T 19-04-2016 AMED_5002 a04d39db131887e8f51803968a643e03 101 Gene3D G3DSA:4.10.830.10 42 101 2.7E-28 T 19-04-2016 AMED_5002 a04d39db131887e8f51803968a643e03 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 1.5E-24 T 19-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 SUPERFAMILY SSF46689 10 81 1.1E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.357.10 9 154 1.1E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 SUPERFAMILY SSF48498 277 356 1.11E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.357.10 256 359 4.6E-12 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 Gene3D G3DSA:1.10.10.60 200 255 8.5E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 PANTHER PTHR30055:SF33 1 227 1.7E-33 T 19-04-2016 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 PANTHER PTHR30055 1 227 1.7E-33 T 19-04-2016 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 SUPERFAMILY SSF46689 200 280 1.28E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.1E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3300 8e1e504f7dfd3fedfa44848e4361b383 385 Pfam PF00440 Bacterial regulatory proteins, tetR family 210 256 1.4E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 Gene3D G3DSA:3.65.10.10 22 220 5.3E-62 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 PANTHER PTHR21090 1 417 3.1E-161 T 19-04-2016 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 407 4.0E-97 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 Gene3D G3DSA:3.65.10.10 221 417 2.6E-49 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 2 417 39.732 T 19-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 SUPERFAMILY SSF55205 4 417 1.8E-125 T 19-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMED_7770 8a3ba20b9977dd5fd434666edd214ca5 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 416 2.6E-159 T 19-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 SUPERFAMILY SSF161111 19 217 1.7E-49 T 19-04-2016 AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 Pfam PF01545 Cation efflux family 26 215 1.1E-39 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 PANTHER PTHR11562 5 303 7.0E-96 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 Gene3D G3DSA:1.20.1510.10 22 215 2.6E-52 T 19-04-2016 IPR027469 Cation efflux protein transmembrane domain AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 SUPERFAMILY SSF160240 222 293 1.31E-7 T 19-04-2016 AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 22 294 1.7E-74 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_7801 31ee8905c6d5fece9dc9624d130e6e68 306 PANTHER PTHR11562:SF17 5 303 7.0E-96 T 19-04-2016 AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 Pfam PF01078 Magnesium chelatase, subunit ChlI 111 181 2.6E-8 T 19-04-2016 IPR000523 Magnesium chelatase ChlI domain AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 SMART SM00382 27 204 2.9E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 SMART SM00327 464 639 6.7E-16 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 Gene3D G3DSA:1.10.8.80 247 332 1.5E-35 T 19-04-2016 AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 SUPERFAMILY SSF53300 467 590 1.26E-21 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 Gene3D G3DSA:3.40.50.300 2 200 3.7E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 Gene3D G3DSA:3.40.50.410 467 588 1.0E-13 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 Pfam PF13519 von Willebrand factor type A domain 467 573 2.4E-14 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 SUPERFAMILY SSF52540 2 325 3.92E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 PANTHER PTHR32039 4 335 4.9E-133 T 19-04-2016 AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 PANTHER PTHR32039:SF10 4 335 4.9E-133 T 19-04-2016 AMED_7054 b4d46c1dab1d27b4eb1022ba85163cfe 646 TIGRFAM TIGR02442 Cob-chelat-sub: cobaltochelatase subunit 4 626 3.4E-238 T 19-04-2016 IPR012804 Cobaltochelatase subunit, putative AMED_4998 4039245615981907c2c5b3dee6dff311 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 67 82 7.0E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4998 4039245615981907c2c5b3dee6dff311 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 127 140 7.0E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4998 4039245615981907c2c5b3dee6dff311 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 7.0E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4998 4039245615981907c2c5b3dee6dff311 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 226 240 7.0E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4998 4039245615981907c2c5b3dee6dff311 284 SUPERFAMILY SSF53474 22 256 3.3E-40 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4998 4039245615981907c2c5b3dee6dff311 284 PANTHER PTHR10992 2 280 1.2E-25 T 19-04-2016 AMED_4998 4039245615981907c2c5b3dee6dff311 284 Pfam PF00561 alpha/beta hydrolase fold 41 147 1.3E-15 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4998 4039245615981907c2c5b3dee6dff311 284 Gene3D G3DSA:3.40.50.1820 24 255 2.2E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8445 65f6ebca995dae4a084ab990a6fe8090 239 Pfam PF01774 UreD urease accessory protein 41 227 3.7E-22 T 19-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMED_8445 65f6ebca995dae4a084ab990a6fe8090 239 Hamap MF_01384 Urease accessory protein UreD [ureD]. 3 239 16.984 T 19-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 Gene3D G3DSA:1.10.287.130 230 304 3.5E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 SMART SM00388 237 309 2.7E-7 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 SMART SM00304 183 236 1.1E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 456 2.1E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 2.1E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.1E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 437 2.1E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 Gene3D G3DSA:3.30.565.10 314 457 2.5E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 Pfam PF00672 HAMP domain 163 231 7.7E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 457 5.7E-20 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 SUPERFAMILY SSF47384 220 307 6.87E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 PANTHER PTHR24423 103 170 4.4E-54 T 19-04-2016 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 PANTHER PTHR24423 216 456 4.4E-54 T 19-04-2016 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 307 4.1E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 SUPERFAMILY SSF55874 313 458 6.16E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5602 3e7e529f79bc250b3312914eda2e8cd1 460 SMART SM00387 349 459 2.1E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 PANTHER PTHR12110:SF17 99 315 1.7E-69 T 19-04-2016 AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 Gene3D G3DSA:3.20.20.150 3 315 1.5E-74 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 PANTHER PTHR12110 1 79 1.7E-69 T 19-04-2016 AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 Pfam PF01261 Xylose isomerase-like TIM barrel 18 271 6.8E-36 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 SUPERFAMILY SSF51658 5 315 2.36E-57 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 Pfam PF07582 AP endonuclease family 2 C terminus 272 326 1.7E-21 T 19-04-2016 IPR011418 AP endonuclease, family 2, C-terminal AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 PANTHER PTHR12110:SF17 1 79 1.7E-69 T 19-04-2016 AMED_7250 8a8ac8526a9785a264a80137c9abe46d 330 PANTHER PTHR12110 99 315 1.7E-69 T 19-04-2016 AMED_7991 c2fac739a75ce1b5cf04962b57cc3079 578 SMART SM00909 211 299 1.4E-7 T 19-04-2016 IPR019606 GerMN domain AMED_7991 c2fac739a75ce1b5cf04962b57cc3079 578 Pfam PF10647 Lipoprotein LpqB beta-propeller domain 334 577 1.9E-54 T 19-04-2016 IPR018910 Lipoprotein LpqB, beta-propeller domain, C-terminal AMED_7991 c2fac739a75ce1b5cf04962b57cc3079 578 SUPERFAMILY SSF82171 336 550 2.94E-6 T 19-04-2016 AMED_8283 acc071dba7506ffe04e61ff7fb76df47 450 SUPERFAMILY SSF54631 224 334 2.78E-14 T 19-04-2016 AMED_8283 acc071dba7506ffe04e61ff7fb76df47 450 Gene3D G3DSA:3.10.580.10 230 333 5.5E-11 T 19-04-2016 AMED_7445 4b006817a376dc298020834748c4671d 598 Gene3D G3DSA:3.20.20.80 42 322 1.8E-22 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7445 4b006817a376dc298020834748c4671d 598 SMART SM00060 472 549 4.6E-5 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7445 4b006817a376dc298020834748c4671d 598 SUPERFAMILY SSF49265 469 565 1.0E-12 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7445 4b006817a376dc298020834748c4671d 598 Gene3D G3DSA:2.60.40.1180 360 462 6.2E-7 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_7445 4b006817a376dc298020834748c4671d 598 SUPERFAMILY SSF51445 44 315 1.37E-40 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7445 4b006817a376dc298020834748c4671d 598 Pfam PF03662 Glycosyl hydrolase family 79, N-terminal domain 119 262 5.7E-5 T 19-04-2016 IPR005199 Glycoside hydrolase, family 79 GO:0016020|GO:0016798 AMED_7445 4b006817a376dc298020834748c4671d 598 Gene3D G3DSA:2.60.40.10 472 559 1.5E-12 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7445 4b006817a376dc298020834748c4671d 598 Pfam PF00041 Fibronectin type III domain 475 548 1.7E-8 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_9208 bfa76af1be0ce915e61f7dfc18eed095 315 SUPERFAMILY SSF161098 68 274 2.75E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9208 bfa76af1be0ce915e61f7dfc18eed095 315 PANTHER PTHR30450:SF2 53 297 6.1E-107 T 19-04-2016 AMED_9208 bfa76af1be0ce915e61f7dfc18eed095 315 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 70 183 1.4E-17 T 19-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AMED_9208 bfa76af1be0ce915e61f7dfc18eed095 315 PANTHER PTHR30450 53 297 6.1E-107 T 19-04-2016 AMED_9208 bfa76af1be0ce915e61f7dfc18eed095 315 Gene3D G3DSA:1.10.3720.10 68 289 1.4E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9208 bfa76af1be0ce915e61f7dfc18eed095 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 289 1.5E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7146 70e9bed928d29f17ef8e2523ef3e29c6 144 SUPERFAMILY SSF54427 15 140 9.16E-32 T 19-04-2016 IPR032710 NTF2-like domain AMED_7146 70e9bed928d29f17ef8e2523ef3e29c6 144 Pfam PF13577 SnoaL-like domain 17 133 9.6E-21 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_7146 70e9bed928d29f17ef8e2523ef3e29c6 144 Gene3D G3DSA:3.10.450.50 18 141 6.7E-31 T 19-04-2016 IPR032710 NTF2-like domain AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 PANTHER PTHR11615:SF125 10 716 5.7E-156 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 6 54 1.0E-9 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 PANTHER PTHR11615 10 716 5.7E-156 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Pfam PF00384 Molybdopterin oxidoreductase 61 439 1.3E-45 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Pfam PF01568 Molydopterin dinucleotide binding domain 590 692 4.3E-20 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Gene3D G3DSA:2.40.40.20 585 716 1.3E-24 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 SUPERFAMILY SSF50692 585 715 2.94E-29 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Gene3D G3DSA:3.40.50.740 330 517 1.0E-47 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Gene3D G3DSA:3.40.50.740 556 566 1.0E-47 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Gene3D G3DSA:3.40.50.740 63 138 1.0E-47 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Gene3D G3DSA:3.40.228.10 148 329 1.8E-52 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 Gene3D G3DSA:2.20.25.90 5 62 8.4E-16 T 19-04-2016 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 SMART SM00926 3 58 5.0E-15 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_9142 3311bfc93de1e3f549d9eea8b31a4a46 716 SUPERFAMILY SSF53706 3 500 2.75E-122 T 19-04-2016 AMED_2065 699438389a9dca03c3a928dfcedc8ec4 297 SMART SM00849 32 225 3.4E-16 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2065 699438389a9dca03c3a928dfcedc8ec4 297 PANTHER PTHR11935 33 253 6.3E-23 T 19-04-2016 AMED_2065 699438389a9dca03c3a928dfcedc8ec4 297 PANTHER PTHR11935:SF95 33 253 6.3E-23 T 19-04-2016 AMED_2065 699438389a9dca03c3a928dfcedc8ec4 297 Gene3D G3DSA:3.60.15.10 33 249 1.3E-38 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2065 699438389a9dca03c3a928dfcedc8ec4 297 Pfam PF00753 Metallo-beta-lactamase superfamily 31 225 3.0E-15 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2065 699438389a9dca03c3a928dfcedc8ec4 297 SUPERFAMILY SSF56281 12 266 1.96E-40 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7112 690168ae766668d3e39edc7daeced9c0 244 Pfam PF13560 Helix-turn-helix domain 13 68 2.6E-8 T 19-04-2016 AMED_7112 690168ae766668d3e39edc7daeced9c0 244 SUPERFAMILY SSF47413 11 68 2.95E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7112 690168ae766668d3e39edc7daeced9c0 244 SMART SM00530 16 71 5.4E-4 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7112 690168ae766668d3e39edc7daeced9c0 244 Gene3D G3DSA:1.10.260.40 13 110 1.2E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 345 356 1.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 336 345 1.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 234 251 1.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00385 P450 superfamily signature 269 280 1.1E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PANTHER PTHR24286:SF42 44 396 8.1E-81 T 19-04-2016 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 SUPERFAMILY SSF48264 10 396 2.1E-91 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 Pfam PF00067 Cytochrome P450 189 392 2.5E-27 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 Gene3D G3DSA:1.10.630.10 10 396 9.6E-112 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 338 347 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PANTHER PTHR24286 44 396 8.1E-81 T 19-04-2016 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 156 171 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 345 356 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 193 215 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 92 103 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 315 330 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 139 155 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 336 345 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 287 314 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0616 a1bad7dfc5fc60c1abdb35d1caaadbd8 396 PRINTS PR00359 B-class P450 signature 269 280 1.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1350 7a721ae84b1c3d59df2ebcdc437ec3ab 275 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 167 200 5.9E-8 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_1350 7a721ae84b1c3d59df2ebcdc437ec3ab 275 Pfam PF01345 Domain of unknown function DUF11 167 200 9.7E-8 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 PANTHER PTHR33406:SF2 3 684 1.4E-132 T 19-04-2016 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 PANTHER PTHR33406 3 684 1.4E-132 T 19-04-2016 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 SUPERFAMILY SSF82866 133 334 7.46E-32 T 19-04-2016 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 SUPERFAMILY SSF82866 463 679 1.27E-29 T 19-04-2016 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 Pfam PF03176 MMPL family 47 363 4.0E-56 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 Pfam PF03176 MMPL family 466 682 6.2E-50 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 Gene3D G3DSA:1.20.1640.10 470 681 1.0E-25 T 19-04-2016 AMED_5146 318ca3564f7b4674bbc29abdec326a07 687 Gene3D G3DSA:1.20.1640.10 128 334 1.9E-30 T 19-04-2016 AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 PANTHER PTHR33490 2 280 2.7E-61 T 19-04-2016 AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 83 8.4E-20 T 19-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 SMART SM00460 168 235 1.4E-19 T 19-04-2016 IPR002931 Transglutaminase-like AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 Gene3D G3DSA:3.90.260.10 117 273 3.1E-18 T 19-04-2016 IPR002931 Transglutaminase-like AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 SUPERFAMILY SSF54001 9 261 4.49E-39 T 19-04-2016 AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 Pfam PF01841 Transglutaminase-like superfamily 131 233 3.6E-26 T 19-04-2016 IPR002931 Transglutaminase-like AMED_9212 7e348bf9b42c27f3328b929fdd116455 280 PANTHER PTHR33490:SF6 2 280 2.7E-61 T 19-04-2016 AMED_8603 004ff6163d0942a41197a762f4c6946f 278 Gene3D G3DSA:1.20.120.450 15 139 8.8E-9 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_8603 004ff6163d0942a41197a762f4c6946f 278 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 23 249 4.7E-24 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_8603 004ff6163d0942a41197a762f4c6946f 278 SUPERFAMILY SSF109854 12 166 1.68E-20 T 19-04-2016 AMED_8603 004ff6163d0942a41197a762f4c6946f 278 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 23 162 7.0E-16 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 SUPERFAMILY SSF46785 1 55 2.23E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 SUPERFAMILY SSF100950 76 231 7.12E-26 T 19-04-2016 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 SMART SM01134 71 232 1.9E-58 T 19-04-2016 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 PANTHER PTHR30363:SF14 1 249 3.2E-98 T 19-04-2016 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 PANTHER PTHR30363 1 249 3.2E-98 T 19-04-2016 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 SMART SM00420 6 58 6.5E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 Gene3D G3DSA:3.40.50.1360 77 212 1.0E-11 T 19-04-2016 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 3.9E-12 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 Gene3D G3DSA:1.10.10.10 5 52 6.8E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 Pfam PF00455 DeoR C terminal sensor domain 76 230 1.9E-43 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-6 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_4730 56d40749a49aadc31bed959c90baa3fc 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-6 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 25 248 8.9E-74 T 19-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 22 132 5.8E-32 T 19-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 SUPERFAMILY SSF54292 19 126 2.81E-24 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 Gene3D G3DSA:1.10.1060.10 127 252 1.9E-40 T 19-04-2016 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 168 179 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 Pfam PF13183 4Fe-4S dicluster domain 166 238 5.7E-11 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 SUPERFAMILY SSF46548 127 252 8.2E-33 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 PANTHER PTHR11921:SF15 4 256 3.5E-109 T 19-04-2016 AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 Gene3D G3DSA:3.10.20.30 15 126 1.4E-34 T 19-04-2016 IPR012675 Beta-grasp domain AMED_0849 c9046b0c4f10e8f98053af8ecc6ccab4 256 PANTHER PTHR11921 4 256 3.5E-109 T 19-04-2016 AMED_6913 9ced298391090bd62309b4735cb41272 224 SUPERFAMILY SSF46894 123 222 1.11E-28 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6913 9ced298391090bd62309b4735cb41272 224 SMART SM00448 2 110 3.3E-37 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6913 9ced298391090bd62309b4735cb41272 224 Gene3D G3DSA:3.40.50.2300 2 118 1.4E-33 T 19-04-2016 AMED_6913 9ced298391090bd62309b4735cb41272 224 Pfam PF00072 Response regulator receiver domain 5 110 1.8E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6913 9ced298391090bd62309b4735cb41272 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 1.2E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6913 9ced298391090bd62309b4735cb41272 224 PANTHER PTHR26402:SF50 2 221 1.5E-83 T 19-04-2016 AMED_6913 9ced298391090bd62309b4735cb41272 224 SUPERFAMILY SSF52172 3 122 1.1E-34 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6913 9ced298391090bd62309b4735cb41272 224 SMART SM00862 145 221 6.5E-27 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6913 9ced298391090bd62309b4735cb41272 224 PANTHER PTHR26402 2 221 1.5E-83 T 19-04-2016 AMED_6913 9ced298391090bd62309b4735cb41272 224 Gene3D G3DSA:1.10.10.10 124 223 7.5E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7145 b3f547e73ee0e780d5a9d114f55b7fab 139 PANTHER PTHR33570:SF2 54 139 7.7E-25 T 19-04-2016 AMED_7145 b3f547e73ee0e780d5a9d114f55b7fab 139 PANTHER PTHR33570 54 139 7.7E-25 T 19-04-2016 AMED_7145 b3f547e73ee0e780d5a9d114f55b7fab 139 Gene3D G3DSA:1.20.1290.10 51 132 3.0E-19 T 19-04-2016 IPR029032 AhpD-like AMED_7145 b3f547e73ee0e780d5a9d114f55b7fab 139 SUPERFAMILY SSF69118 52 129 2.36E-25 T 19-04-2016 IPR029032 AhpD-like AMED_7145 b3f547e73ee0e780d5a9d114f55b7fab 139 Pfam PF02627 Carboxymuconolactone decarboxylase family 54 127 7.6E-22 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3682 0d37ab929249491125f70f2380fbc50e 503 Gene3D G3DSA:3.40.50.980 9 164 1.4E-31 T 19-04-2016 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 418 488 4.3E-6 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3682 0d37ab929249491125f70f2380fbc50e 503 Pfam PF00501 AMP-binding enzyme 16 409 2.4E-64 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 Gene3D G3DSA:3.30.300.30 404 500 6.6E-26 T 19-04-2016 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 Gene3D G3DSA:3.40.50.980 165 334 1.4E-30 T 19-04-2016 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 SUPERFAMILY SSF56801 10 500 3.01E-109 T 19-04-2016 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 PANTHER PTHR24095 11 488 5.2E-120 T 19-04-2016 AMED_3682 0d37ab929249491125f70f2380fbc50e 503 Gene3D G3DSA:2.30.38.10 335 402 6.6E-14 T 19-04-2016 AMED_0823 2cebba7138354fa7476659a4de45860a 392 Pfam PF07690 Major Facilitator Superfamily 12 188 1.2E-28 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0823 2cebba7138354fa7476659a4de45860a 392 Pfam PF07690 Major Facilitator Superfamily 210 386 7.1E-12 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0823 2cebba7138354fa7476659a4de45860a 392 Gene3D G3DSA:1.20.1250.20 9 184 2.4E-28 T 19-04-2016 AMED_0823 2cebba7138354fa7476659a4de45860a 392 Gene3D G3DSA:1.20.1250.20 201 379 3.7E-18 T 19-04-2016 AMED_0823 2cebba7138354fa7476659a4de45860a 392 SUPERFAMILY SSF103473 9 383 1.57E-59 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0823 2cebba7138354fa7476659a4de45860a 392 PANTHER PTHR23501:SF4 6 390 5.1E-97 T 19-04-2016 AMED_0823 2cebba7138354fa7476659a4de45860a 392 PANTHER PTHR23501 6 390 5.1E-97 T 19-04-2016 AMED_0064 8dd76ec32856d0c0c6664393218bf5f3 194 SUPERFAMILY SSF63817 83 192 1.22E-12 T 19-04-2016 IPR023365 Sortase domain AMED_0064 8dd76ec32856d0c0c6664393218bf5f3 194 PANTHER PTHR33393 20 193 2.8E-28 T 19-04-2016 AMED_0064 8dd76ec32856d0c0c6664393218bf5f3 194 PANTHER PTHR33393:SF4 20 193 2.8E-28 T 19-04-2016 AMED_0064 8dd76ec32856d0c0c6664393218bf5f3 194 Gene3D G3DSA:2.40.260.10 84 172 8.9E-6 T 19-04-2016 IPR023365 Sortase domain AMED_0064 8dd76ec32856d0c0c6664393218bf5f3 194 Pfam PF04203 Sortase family 52 191 4.0E-15 T 19-04-2016 IPR005754 Sortase family AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 PANTHER PTHR32305 450 771 4.4E-21 T 19-04-2016 AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 PANTHER PTHR32305:SF6 225 425 4.4E-21 T 19-04-2016 AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 PANTHER PTHR32305:SF6 450 771 4.4E-21 T 19-04-2016 AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 PANTHER PTHR32305 225 425 4.4E-21 T 19-04-2016 AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 889 963 6.7E-14 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 477 504 1.9E-4 T 19-04-2016 IPR006530 YD repeat AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 622 660 2.4E-8 T 19-04-2016 IPR006530 YD repeat AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 300 330 7.1E-4 T 19-04-2016 IPR006530 YD repeat AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 475 506 2.6E-5 T 19-04-2016 IPR031325 RHS repeat AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 622 659 2.8E-7 T 19-04-2016 IPR031325 RHS repeat AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 300 334 3.8E-8 T 19-04-2016 IPR031325 RHS repeat AMED_2081 d7e309de9f75ca588ce74eb3d8ce0e44 1059 Pfam PF05593 RHS Repeat 261 292 6.0E-6 T 19-04-2016 IPR031325 RHS repeat AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 Gene3D G3DSA:1.20.120.530 110 237 2.0E-22 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 SMART SM00895 112 235 1.5E-19 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 PANTHER PTHR11751 27 90 3.5E-21 T 19-04-2016 AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 PANTHER PTHR11751 110 128 3.5E-21 T 19-04-2016 AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 Pfam PF07729 FCD domain 112 234 3.2E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 Gene3D G3DSA:1.10.10.10 17 93 2.8E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 SUPERFAMILY SSF46785 17 87 1.51E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 SMART SM00345 24 83 2.1E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 SUPERFAMILY SSF48008 111 236 1.26E-22 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 2.8E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 2.8E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3955 768a13b35cf6dbcd3b17c832e254218a 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 83 6.6E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 SUPERFAMILY SSF53067 3 154 1.36E-20 T 19-04-2016 AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 SUPERFAMILY SSF53067 164 345 1.37E-28 T 19-04-2016 AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 PANTHER PTHR19375 2 344 3.7E-39 T 19-04-2016 AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 307 321 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 Pfam PF00012 Hsp70 protein 90 344 2.6E-26 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 Gene3D G3DSA:3.30.420.40 173 331 4.7E-14 T 19-04-2016 AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 PANTHER PTHR19375:SF154 2 344 3.7E-39 T 19-04-2016 AMED_8725 71138bbd7ed7d43fd1327e8a96737bf0 568 Gene3D G3DSA:3.30.420.40 3 172 2.5E-23 T 19-04-2016 AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 Pfam PF00106 short chain dehydrogenase 301 483 4.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 373 384 7.4E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 427 435 7.4E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 447 466 7.4E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 SUPERFAMILY SSF51735 300 520 1.67E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 373 384 1.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 447 466 1.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 468 485 1.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 301 318 1.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 421 437 1.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 Pfam PF00561 alpha/beta hydrolase fold 20 138 2.2E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 Gene3D G3DSA:3.40.50.1820 2 275 6.3E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 Gene3D G3DSA:3.40.50.720 300 483 6.8E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 434 462 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PANTHER PTHR24322 447 478 3.9E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 PANTHER PTHR24322 304 431 3.9E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8453 30e8c14ed8ba2980d19178fcb74afed2 532 SUPERFAMILY SSF53474 3 275 2.95E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:1.10.8.60 187 250 1.2E-9 T 19-04-2016 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 SMART SM00382 70 187 6.6E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 74 178 1.3E-15 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:1.10.3710.10 366 454 3.5E-27 T 19-04-2016 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 PANTHER PTHR13779 1 453 5.3E-175 T 19-04-2016 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:3.40.50.300 30 183 3.9E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 SUPERFAMILY SSF52540 34 254 3.71E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 PANTHER PTHR13779:SF7 1 453 5.3E-175 T 19-04-2016 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Gene3D G3DSA:1.20.272.10 267 365 3.1E-47 T 19-04-2016 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 SUPERFAMILY SSF48019 271 454 4.65E-75 T 19-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Pfam PF12002 MgsA AAA+ ATPase C terminal 286 451 7.6E-70 T 19-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal AMED_2708 b79e5b2589870b0f9615e7ece64ee727 458 Pfam PF16193 AAA C-terminal domain 209 285 8.2E-28 T 19-04-2016 IPR032423 AAA ATPase, C-terminal domain AMED_8579 09753fd82294007b5aef0616de46e391 219 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 15 219 25.253 T 19-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMED_8579 09753fd82294007b5aef0616de46e391 219 SUPERFAMILY SSF51391 9 215 1.2E-60 T 19-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMED_8579 09753fd82294007b5aef0616de46e391 219 PANTHER PTHR20857 5 218 2.1E-62 T 19-04-2016 AMED_8579 09753fd82294007b5aef0616de46e391 219 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 17 214 1.7E-60 T 19-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMED_8579 09753fd82294007b5aef0616de46e391 219 PANTHER PTHR20857:SF15 5 218 2.1E-62 T 19-04-2016 AMED_8579 09753fd82294007b5aef0616de46e391 219 Pfam PF02581 Thiamine monophosphate synthase/TENI 18 201 4.4E-51 T 19-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMED_8579 09753fd82294007b5aef0616de46e391 219 Gene3D G3DSA:3.20.20.70 9 217 2.4E-73 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 Hamap MF_00600 60 kDa chaperonin [groL]. 1 535 38.861 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 PANTHER PTHR11353 3 533 2.8E-202 T 19-04-2016 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF54849 136 203 1.37E-20 T 19-04-2016 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 82 109 4.9E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 396 417 4.9E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 26 52 4.9E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 266 289 4.9E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 PRINTS PR00298 60kDa chaperonin signature 348 373 4.9E-67 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 19-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 1.4E-86 T 19-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF48592 1 135 2.84E-74 T 19-04-2016 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF48592 406 523 2.84E-74 T 19-04-2016 AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 SUPERFAMILY SSF52029 183 374 3.31E-73 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 Gene3D G3DSA:1.10.560.10 3 151 7.3E-40 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 Gene3D G3DSA:3.50.7.10 172 363 8.3E-86 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 Gene3D G3DSA:1.10.560.10 364 516 4.1E-37 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_0763 fea6fe432eff0590ac1ee023a513613e 537 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 524 5.7E-226 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 SMART SM00881 4 104 5.3E-31 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 Pfam PF02629 CoA binding domain 7 103 7.5E-26 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 SUPERFAMILY SSF52210 129 292 4.97E-47 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 Gene3D G3DSA:3.40.50.261 126 291 1.9E-65 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 19-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMED_0803 108b23149b848e73a8805eecaf832dbf 296 SUPERFAMILY SSF51735 1 128 3.04E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0803 108b23149b848e73a8805eecaf832dbf 296 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 185 - T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 PANTHER PTHR11117 1 292 3.0E-145 T 19-04-2016 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 PIRSF PIRSF001553 1 295 2.0E-116 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 Pfam PF00549 CoA-ligase 158 275 5.3E-15 T 19-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 Gene3D G3DSA:3.40.50.720 2 125 5.0E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0803 108b23149b848e73a8805eecaf832dbf 296 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 290 3.3E-127 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 86 103 1.6E-34 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 1.6E-34 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 181 199 1.6E-34 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_0803 108b23149b848e73a8805eecaf832dbf 296 PRINTS PR01798 Succinyl-CoA synthase signature 212 225 1.6E-34 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMED_3425 ef5f500e6dc77f06a71573b0e4ffb529 217 Pfam PF13649 Methyltransferase domain 57 145 2.7E-19 T 19-04-2016 AMED_3425 ef5f500e6dc77f06a71573b0e4ffb529 217 Gene3D G3DSA:3.40.50.150 15 192 5.5E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3425 ef5f500e6dc77f06a71573b0e4ffb529 217 PANTHER PTHR10108 57 148 9.7E-19 T 19-04-2016 AMED_3425 ef5f500e6dc77f06a71573b0e4ffb529 217 SUPERFAMILY SSF53335 16 204 9.07E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 5.0E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 5.0E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 5.0E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 SMART SM00421 149 206 1.5E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 PANTHER PTHR26402 4 211 5.4E-79 T 19-04-2016 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 8.7E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 SUPERFAMILY SSF46894 137 211 4.42E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 Gene3D G3DSA:1.10.10.10 123 211 8.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 Gene3D G3DSA:3.40.50.2300 2 122 7.6E-37 T 19-04-2016 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 PANTHER PTHR26402:SF151 4 211 5.4E-79 T 19-04-2016 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 SMART SM00448 4 117 2.6E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 Pfam PF00072 Response regulator receiver domain 6 117 5.5E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0983 01e757970ef4d6ae0628cad868334ee3 214 SUPERFAMILY SSF52172 3 135 5.83E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8074 8de5709571ef67f858951821dfa84149 430 SUPERFAMILY SSF88723 92 136 1.51E-9 T 19-04-2016 IPR029060 PIN domain-like AMED_8074 8de5709571ef67f858951821dfa84149 430 SUPERFAMILY SSF88723 1 59 1.51E-9 T 19-04-2016 IPR029060 PIN domain-like AMED_8074 8de5709571ef67f858951821dfa84149 430 Pfam PF13638 PIN domain 2 140 7.9E-29 T 19-04-2016 IPR002716 PIN domain AMED_8074 8de5709571ef67f858951821dfa84149 430 PANTHER PTHR30473 1 428 2.9E-178 T 19-04-2016 AMED_8074 8de5709571ef67f858951821dfa84149 430 Gene3D G3DSA:3.40.50.300 221 426 1.9E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8074 8de5709571ef67f858951821dfa84149 430 PANTHER PTHR30473:SF2 1 428 2.9E-178 T 19-04-2016 AMED_8074 8de5709571ef67f858951821dfa84149 430 SMART SM00670 1 127 2.2E-12 T 19-04-2016 IPR002716 PIN domain AMED_8074 8de5709571ef67f858951821dfa84149 430 SUPERFAMILY SSF52540 220 382 1.41E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8074 8de5709571ef67f858951821dfa84149 430 Pfam PF02562 PhoH-like protein 222 426 9.8E-53 T 19-04-2016 IPR003714 PhoH-like protein GO:0005524 AMED_8074 8de5709571ef67f858951821dfa84149 430 Gene3D G3DSA:3.40.50.1010 2 59 7.0E-11 T 19-04-2016 IPR029060 PIN domain-like AMED_8074 8de5709571ef67f858951821dfa84149 430 Gene3D G3DSA:3.40.50.1010 92 141 7.0E-11 T 19-04-2016 IPR029060 PIN domain-like AMED_2036 44d1c4af88be09f064ead681f2155813 392 Gene3D G3DSA:3.40.50.720 1 154 2.8E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2036 44d1c4af88be09f064ead681f2155813 392 Gene3D G3DSA:1.10.1740.10 307 390 2.4E-29 T 19-04-2016 AMED_2036 44d1c4af88be09f064ead681f2155813 392 SUPERFAMILY SSF55347 132 268 2.06E-52 T 19-04-2016 AMED_2036 44d1c4af88be09f064ead681f2155813 392 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 1 388 40.42 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 SUPERFAMILY SSF51735 1 154 1.77E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2036 44d1c4af88be09f064ead681f2155813 392 SUPERFAMILY SSF69055 296 390 1.7E-24 T 19-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 PANTHER PTHR30525 1 390 1.1E-174 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 150 233 1.2E-35 T 19-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 PIRSF PIRSF006205 1 392 1.2E-131 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 138 1.4E-32 T 19-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 385 2.1E-105 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2036 44d1c4af88be09f064ead681f2155813 392 Pfam PF13288 DXP reductoisomerase C-terminal domain 266 383 7.1E-34 T 19-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_1377 516666014b81acc58f639764643a1a52 268 Gene3D G3DSA:3.40.50.300 11 257 5.3E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1377 516666014b81acc58f639764643a1a52 268 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 237 259 8.7E-10 T 19-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMED_1377 516666014b81acc58f639764643a1a52 268 Pfam PF00005 ABC transporter 29 189 4.7E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1377 516666014b81acc58f639764643a1a52 268 SUPERFAMILY SSF52540 14 259 3.28E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1377 516666014b81acc58f639764643a1a52 268 PANTHER PTHR24220 136 265 7.4E-96 T 19-04-2016 AMED_1377 516666014b81acc58f639764643a1a52 268 PANTHER PTHR24220 15 120 7.4E-96 T 19-04-2016 AMED_1377 516666014b81acc58f639764643a1a52 268 PANTHER PTHR24220:SF358 136 265 7.4E-96 T 19-04-2016 AMED_1377 516666014b81acc58f639764643a1a52 268 PANTHER PTHR24220:SF358 15 120 7.4E-96 T 19-04-2016 AMED_1377 516666014b81acc58f639764643a1a52 268 SMART SM00382 38 236 2.7E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 PANTHER PTHR24220:SF568 3 239 2.0E-103 T 19-04-2016 AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 SUPERFAMILY SSF52540 2 238 1.38E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 SMART SM00382 27 217 7.9E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 PANTHER PTHR24220 3 239 2.0E-103 T 19-04-2016 AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 Gene3D G3DSA:3.40.50.300 2 235 3.3E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7027 151cc4bcc1f571a38fe3d0768fcb4352 269 Pfam PF00005 ABC transporter 18 168 1.4E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9055 e6e3a2653ffa93826573ea81625fb551 331 SUPERFAMILY SSF46785 264 327 1.91E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9055 e6e3a2653ffa93826573ea81625fb551 331 Pfam PF01022 Bacterial regulatory protein, arsR family 274 306 3.1E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_9055 e6e3a2653ffa93826573ea81625fb551 331 Gene3D G3DSA:1.10.10.10 266 321 1.7E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9055 e6e3a2653ffa93826573ea81625fb551 331 SMART SM00418 260 331 1.5E-4 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0923 7399f0dd24f119a5381d456e1caa560e 215 SUPERFAMILY SSF63817 65 213 1.31E-16 T 19-04-2016 IPR023365 Sortase domain AMED_0923 7399f0dd24f119a5381d456e1caa560e 215 PANTHER PTHR33393 4 214 4.5E-32 T 19-04-2016 AMED_0923 7399f0dd24f119a5381d456e1caa560e 215 Pfam PF04203 Sortase family 72 213 4.3E-18 T 19-04-2016 IPR005754 Sortase family AMED_0923 7399f0dd24f119a5381d456e1caa560e 215 Gene3D G3DSA:2.40.260.10 72 213 1.2E-8 T 19-04-2016 IPR023365 Sortase domain AMED_0923 7399f0dd24f119a5381d456e1caa560e 215 PANTHER PTHR33393:SF4 4 214 4.5E-32 T 19-04-2016 AMED_4337 1724c87f608bd661d15d9651da906f09 260 PANTHER PTHR24322 153 184 1.4E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PANTHER PTHR24322 11 137 1.4E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 193 4.0E-4 T 19-04-2016 AMED_4337 1724c87f608bd661d15d9651da906f09 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4337 1724c87f608bd661d15d9651da906f09 260 SUPERFAMILY SSF51735 2 259 2.69E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.7E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.7E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.7E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.7E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.7E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 Gene3D G3DSA:3.40.50.720 1 259 2.3E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4337 1724c87f608bd661d15d9651da906f09 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 259 6.2E-50 T 19-04-2016 AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.7E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.7E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4337 1724c87f608bd661d15d9651da906f09 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.7E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6505 2a93f7da0ed67f179b33b0f11345bfe6 415 PANTHER PTHR24421 68 414 1.7E-86 T 19-04-2016 AMED_6505 2a93f7da0ed67f179b33b0f11345bfe6 415 Gene3D G3DSA:3.30.565.10 315 400 4.6E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6505 2a93f7da0ed67f179b33b0f11345bfe6 415 PANTHER PTHR24421:SF26 68 414 1.7E-86 T 19-04-2016 AMED_6505 2a93f7da0ed67f179b33b0f11345bfe6 415 Pfam PF07730 Histidine kinase 203 267 2.3E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6505 2a93f7da0ed67f179b33b0f11345bfe6 415 SUPERFAMILY SSF55874 296 402 3.46E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:3.30.1360.10 171 217 3.7E-5 T 19-04-2016 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:2.170.120.12 62 168 8.6E-46 T 19-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF56553 48 169 1.18E-42 T 19-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF55257 170 220 2.16E-26 T 19-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF55257 13 48 2.16E-26 T 19-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 19 310 3.3E-115 T 19-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:3.30.1360.10 9 61 1.3E-10 T 19-04-2016 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Gene3D G3DSA:1.10.150.20 245 318 4.0E-31 T 19-04-2016 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 SUPERFAMILY SSF47789 246 317 1.7E-23 T 19-04-2016 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 243 301 6.0E-26 T 19-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 SMART SM00662 18 225 1.6E-97 T 19-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 57 149 1.9E-25 T 19-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 24 218 3.1E-20 T 19-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 311 34.716 T 19-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 250 320 2.0E-23 T 19-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 PANTHER PTHR32108:SF0 12 324 2.2E-136 T 19-04-2016 AMED_0708 f19b16a7d3b5b62b55dd9ae8789707cd 356 PANTHER PTHR32108 12 324 2.2E-136 T 19-04-2016 AMED_8704 00b0a3a5cfe9a9f67de69b877d5be03d 248 Pfam PF12697 Alpha/beta hydrolase family 11 233 1.1E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8704 00b0a3a5cfe9a9f67de69b877d5be03d 248 PANTHER PTHR10992 10 244 2.5E-40 T 19-04-2016 AMED_8704 00b0a3a5cfe9a9f67de69b877d5be03d 248 Gene3D G3DSA:3.40.50.1820 6 243 1.9E-45 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8704 00b0a3a5cfe9a9f67de69b877d5be03d 248 SUPERFAMILY SSF53474 5 242 4.86E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8704 00b0a3a5cfe9a9f67de69b877d5be03d 248 PANTHER PTHR10992:SF771 10 244 2.5E-40 T 19-04-2016 AMED_0147 be16b68a1480432d6e8f35d76c80a110 187 Pfam PF00210 Ferritin-like domain 18 153 6.4E-34 T 19-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMED_0147 be16b68a1480432d6e8f35d76c80a110 187 Gene3D G3DSA:1.20.1260.10 13 168 3.5E-45 T 19-04-2016 IPR012347 Ferritin-related AMED_0147 be16b68a1480432d6e8f35d76c80a110 187 SUPERFAMILY SSF47240 15 159 8.77E-44 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_0147 be16b68a1480432d6e8f35d76c80a110 187 PANTHER PTHR11431 18 175 8.5E-27 T 19-04-2016 IPR001519 Ferritin GO:0006826|GO:0006879|GO:0008199 AMED_0147 be16b68a1480432d6e8f35d76c80a110 187 PANTHER PTHR11431:SF4 18 175 8.5E-27 T 19-04-2016 AMED_1613 24852d9ca1ccae6cfaa96364ca6fe97d 270 SUPERFAMILY SSF52540 10 247 1.5E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1613 24852d9ca1ccae6cfaa96364ca6fe97d 270 SMART SM00382 39 240 2.7E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1613 24852d9ca1ccae6cfaa96364ca6fe97d 270 PANTHER PTHR24220 16 253 1.1E-95 T 19-04-2016 AMED_1613 24852d9ca1ccae6cfaa96364ca6fe97d 270 PANTHER PTHR24220:SF383 16 253 1.1E-95 T 19-04-2016 AMED_1613 24852d9ca1ccae6cfaa96364ca6fe97d 270 Gene3D G3DSA:3.40.50.300 11 251 1.6E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1613 24852d9ca1ccae6cfaa96364ca6fe97d 270 Pfam PF00005 ABC transporter 31 181 1.2E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SMART SM00889 482 603 3.6E-72 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Pfam PF00679 Elongation factor G C-terminus 605 691 1.8E-30 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Gene3D G3DSA:3.30.70.240 602 695 9.5E-34 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Pfam PF03144 Elongation factor Tu domain 2 326 393 2.7E-13 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SUPERFAMILY SSF54980 406 483 1.01E-24 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Gene3D G3DSA:3.30.70.870 408 482 2.6E-37 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Gene3D G3DSA:3.40.50.300 7 289 6.7E-106 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0674 06c1b13626cfdd292e0e295da7265028 699 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_0674 06c1b13626cfdd292e0e295da7265028 699 TIGRFAM TIGR00484 EF-G: translation elongation factor G 7 696 0.0 T 19-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SUPERFAMILY SSF50447 267 406 3.03E-32 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PANTHER PTHR23115:SF66 305 696 0.0 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PANTHER PTHR23115:SF66 1 179 0.0 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PANTHER PTHR23115:SF66 257 285 0.0 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Gene3D G3DSA:3.30.230.10 486 601 1.9E-46 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Pfam PF14492 Elongation Factor G, domain II 406 480 9.1E-34 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PANTHER PTHR23115 257 285 0.0 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SUPERFAMILY SSF52540 8 283 6.44E-108 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PANTHER PTHR23115 1 179 0.0 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PANTHER PTHR23115 305 696 0.0 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Hamap MF_00054_B Elongation factor G [fusA]. 8 696 107.199 T 19-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Pfam PF00009 Elongation factor Tu GTP binding domain 11 283 1.9E-67 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SMART SM00838 605 692 5.3E-58 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 182 5.3E-36 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SUPERFAMILY SSF54211 481 604 1.95E-40 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_0674 06c1b13626cfdd292e0e295da7265028 699 SUPERFAMILY SSF54980 608 694 1.06E-30 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Gene3D G3DSA:2.40.30.10 308 407 1.8E-34 T 19-04-2016 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 Pfam PF03764 Elongation factor G, domain IV 481 602 1.2E-46 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PRINTS PR00315 GTP-binding elongation factor signature 80 90 9.0E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PRINTS PR00315 GTP-binding elongation factor signature 96 107 9.0E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PRINTS PR00315 GTP-binding elongation factor signature 14 27 9.0E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PRINTS PR00315 GTP-binding elongation factor signature 60 68 9.0E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_0674 06c1b13626cfdd292e0e295da7265028 699 PRINTS PR00315 GTP-binding elongation factor signature 132 141 9.0E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8223 e798108bb32bbce2c7ad2c4d91a33c55 198 PANTHER PTHR11727:SF14 1 112 6.0E-20 T 19-04-2016 AMED_8223 e798108bb32bbce2c7ad2c4d91a33c55 198 PANTHER PTHR11727 1 112 6.0E-20 T 19-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMED_8223 e798108bb32bbce2c7ad2c4d91a33c55 198 Pfam PF13649 Methyltransferase domain 40 131 4.0E-7 T 19-04-2016 AMED_8223 e798108bb32bbce2c7ad2c4d91a33c55 198 Gene3D G3DSA:3.40.50.150 18 140 6.0E-16 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8223 e798108bb32bbce2c7ad2c4d91a33c55 198 SUPERFAMILY SSF53335 13 177 1.75E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 Gene3D G3DSA:1.10.8.50 2 58 7.8E-22 T 19-04-2016 AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 PIRSF PIRSF002134 1 111 4.0E-38 T 19-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 PANTHER PTHR10871 2 109 2.6E-55 T 19-04-2016 AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 106 19.718 T 19-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 Pfam PF00416 Ribosomal protein S13/S18 2 95 8.3E-28 T 19-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 Gene3D G3DSA:4.10.910.10 59 111 4.4E-26 T 19-04-2016 IPR027437 30s ribosomal protein S13, C-terminal AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 SUPERFAMILY SSF46946 2 108 4.88E-40 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_0704 e29ace744d0e5032dd3511c8bd7e7950 112 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 2 101 3.9E-45 T 19-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 SUPERFAMILY SSF54909 66 139 8.18E-14 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7741 4a62470e3730adc947469daf93e37ce1 154 PANTHER PTHR30154:SF2 1 151 3.6E-40 T 19-04-2016 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 Pfam PF13404 AsnC-type helix-turn-helix domain 5 46 7.9E-16 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 Gene3D G3DSA:3.30.70.920 58 131 3.3E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7741 4a62470e3730adc947469daf93e37ce1 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 6.4E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 6.4E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 6.4E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 SMART SM00344 5 111 5.9E-33 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 PANTHER PTHR30154 1 151 3.6E-40 T 19-04-2016 AMED_7741 4a62470e3730adc947469daf93e37ce1 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 19-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMED_7741 4a62470e3730adc947469daf93e37ce1 154 Pfam PF01037 Lrp/AsnC ligand binding domain 80 137 2.4E-11 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7741 4a62470e3730adc947469daf93e37ce1 154 SUPERFAMILY SSF46785 5 65 1.11E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7741 4a62470e3730adc947469daf93e37ce1 154 Gene3D G3DSA:1.10.10.10 6 56 3.9E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8351 954fcf3f1f4b72053810670a823f38c0 132 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 130 1.1E-20 T 19-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein AMED_8351 954fcf3f1f4b72053810670a823f38c0 132 PANTHER PTHR12589 2 130 3.4E-61 T 19-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein AMED_8351 954fcf3f1f4b72053810670a823f38c0 132 Gene3D G3DSA:3.30.479.10 2 130 1.0E-40 T 19-04-2016 AMED_8351 954fcf3f1f4b72053810670a823f38c0 132 SUPERFAMILY SSF55620 2 129 7.78E-26 T 19-04-2016 AMED_8351 954fcf3f1f4b72053810670a823f38c0 132 PANTHER PTHR12589:SF4 2 130 3.4E-61 T 19-04-2016 AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 Gene3D G3DSA:3.90.650.10 154 316 4.1E-46 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 PIRSF PIRSF005303 7 317 1.3E-87 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 PANTHER PTHR30270:SF0 7 318 5.2E-95 T 19-04-2016 AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 Pfam PF00586 AIR synthase related protein, N-terminal domain 36 145 6.2E-21 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 SUPERFAMILY SSF56042 151 306 2.62E-29 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 12 316 7.5E-82 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 PANTHER PTHR30270 7 318 5.2E-95 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 Gene3D G3DSA:3.30.1330.10 8 147 5.7E-44 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 11 314 29.275 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMED_1745 db80c7bb5d3f55ba07f556b637dab2f7 318 SUPERFAMILY SSF55326 10 145 1.96E-33 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SUPERFAMILY SSF47413 6 69 9.57E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5453 dff6f005484e06707120a6fbed83c464 740 PRINTS PR00364 Disease resistance protein signature 286 300 9.1E-7 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 PRINTS PR00364 Disease resistance protein signature 123 138 9.1E-7 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 PRINTS PR00364 Disease resistance protein signature 182 196 9.1E-7 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 Gene3D G3DSA:1.10.260.40 7 68 2.3E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SUPERFAMILY SSF48452 524 719 2.34E-19 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SMART SM00028 611 644 230.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SMART SM00028 531 564 6.4 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SMART SM00028 571 604 0.23 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SMART SM00028 651 684 42.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 Pfam PF13424 Tetratricopeptide repeat 572 639 6.4E-9 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 PANTHER PTHR10098 514 682 1.2E-16 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 Gene3D G3DSA:1.25.40.10 458 482 2.5E-21 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 Gene3D G3DSA:1.25.40.10 538 719 2.5E-21 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5453 dff6f005484e06707120a6fbed83c464 740 Pfam PF13560 Helix-turn-helix domain 9 70 1.4E-12 T 19-04-2016 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SMART SM00530 13 69 9.7E-12 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5453 dff6f005484e06707120a6fbed83c464 740 SUPERFAMILY SSF52540 87 349 1.05E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0259 a7088b50c09d2acf22756c36a1d0a7cb 343 PANTHER PTHR30024:SF8 32 291 2.5E-25 T 19-04-2016 AMED_0259 a7088b50c09d2acf22756c36a1d0a7cb 343 PANTHER PTHR30024 32 291 2.5E-25 T 19-04-2016 AMED_0259 a7088b50c09d2acf22756c36a1d0a7cb 343 Gene3D G3DSA:3.40.190.10 116 248 3.6E-15 T 19-04-2016 AMED_0259 a7088b50c09d2acf22756c36a1d0a7cb 343 SUPERFAMILY SSF53850 31 269 1.09E-31 T 19-04-2016 AMED_0259 a7088b50c09d2acf22756c36a1d0a7cb 343 Pfam PF09084 NMT1/THI5 like 48 259 6.3E-17 T 19-04-2016 IPR015168 SsuA/THI5-like AMED_0565 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Pfam PF09940 Domain of unknown function (DUF2172) 63 154 4.1E-39 T 19-04-2016 IPR032610 Domain of unknown function DUF2172 AMED_0565 f5e2e2e5bdd34b7de7741f6873ff3af7 426 PIRSF PIRSF015244 3 426 1.6E-207 T 19-04-2016 IPR012353 Uncharacterised conserved protein UCP01524, polysaccharide biosynthesis aminopeptidase-like AMED_0565 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Pfam PF16221 winged helix-turn-helix 350 425 1.7E-31 T 19-04-2016 IPR032622 UCP01524, winged helix-turn-helix domain AMED_0565 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Gene3D G3DSA:3.40.630.10 167 338 1.5E-11 T 19-04-2016 AMED_0565 f5e2e2e5bdd34b7de7741f6873ff3af7 426 Pfam PF16254 Domain of unknown function (DUF4910) 13 348 7.0E-113 T 19-04-2016 IPR032589 Domain of unknown function DUF4910 AMED_0565 f5e2e2e5bdd34b7de7741f6873ff3af7 426 SUPERFAMILY SSF53187 87 348 5.11E-35 T 19-04-2016 AMED_2503 3dc25dadf497efe710b59563dad3e032 933 Gene3D G3DSA:3.40.50.300 760 902 2.3E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2503 3dc25dadf497efe710b59563dad3e032 933 PANTHER PTHR10799 518 929 3.8E-162 T 19-04-2016 AMED_2503 3dc25dadf497efe710b59563dad3e032 933 PANTHER PTHR10799 443 501 3.8E-162 T 19-04-2016 AMED_2503 3dc25dadf497efe710b59563dad3e032 933 SMART SM00490 792 874 5.0E-24 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_2503 3dc25dadf497efe710b59563dad3e032 933 SUPERFAMILY SSF52540 683 930 1.36E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2503 3dc25dadf497efe710b59563dad3e032 933 Pfam PF00271 Helicase conserved C-terminal domain 767 874 9.5E-17 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_2503 3dc25dadf497efe710b59563dad3e032 933 Gene3D G3DSA:3.40.50.300 440 633 1.1E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2503 3dc25dadf497efe710b59563dad3e032 933 SUPERFAMILY SSF52540 438 678 4.49E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2503 3dc25dadf497efe710b59563dad3e032 933 Pfam PF12419 SNF2 Helicase protein 279 405 9.5E-35 T 19-04-2016 IPR022138 Helicase SWF/SNF-related AMED_2503 3dc25dadf497efe710b59563dad3e032 933 SMART SM00487 446 647 1.2E-26 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_2503 3dc25dadf497efe710b59563dad3e032 933 Pfam PF00176 SNF2 family N-terminal domain 469 747 2.2E-51 T 19-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMED_4667 a770faa50c8028ca3e12fb746898383e 144 Gene3D G3DSA:2.40.50.140 81 142 1.0E-21 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_4667 a770faa50c8028ca3e12fb746898383e 144 SUPERFAMILY SSF141322 78 141 3.79E-6 T 19-04-2016 AMED_4667 a770faa50c8028ca3e12fb746898383e 144 PANTHER PTHR33507 5 143 2.2E-26 T 19-04-2016 AMED_4667 a770faa50c8028ca3e12fb746898383e 144 PANTHER PTHR33507:SF3 5 143 2.2E-26 T 19-04-2016 AMED_4667 a770faa50c8028ca3e12fb746898383e 144 Pfam PF01957 NfeD-like C-terminal, partner-binding 6 141 2.4E-20 T 19-04-2016 IPR002810 NfeD-like, C-terminal domain AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 ProSitePatterns PS01117 MarR-type HTH domain signature. 69 104 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 SMART SM00347 30 123 7.4E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 SUPERFAMILY SSF46785 11 123 5.15E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 PANTHER PTHR33164 8 124 2.3E-20 T 19-04-2016 AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 Gene3D G3DSA:1.10.10.10 13 123 2.1E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 Pfam PF01047 MarR family 40 95 1.9E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7545 1bb3815fe80de6997a7b4d1f4ed53bee 124 PANTHER PTHR33164:SF15 8 124 2.3E-20 T 19-04-2016 AMED_7995 297db45acb3ef9782d431895511d8bc3 261 Gene3D G3DSA:3.30.450.40 84 259 3.4E-53 T 19-04-2016 IPR029016 GAF domain-like AMED_7995 297db45acb3ef9782d431895511d8bc3 261 PANTHER PTHR30136 14 258 1.8E-62 T 19-04-2016 AMED_7995 297db45acb3ef9782d431895511d8bc3 261 Pfam PF01614 Bacterial transcriptional regulator 132 254 7.4E-35 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_7995 297db45acb3ef9782d431895511d8bc3 261 Gene3D G3DSA:1.10.10.10 12 83 1.0E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7995 297db45acb3ef9782d431895511d8bc3 261 SMART SM00346 14 103 1.1E-17 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7995 297db45acb3ef9782d431895511d8bc3 261 SUPERFAMILY SSF46785 14 85 7.81E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7995 297db45acb3ef9782d431895511d8bc3 261 SUPERFAMILY SSF55781 71 258 9.16E-47 T 19-04-2016 IPR029016 GAF domain-like AMED_7995 297db45acb3ef9782d431895511d8bc3 261 Pfam PF09339 IclR helix-turn-helix domain 16 65 6.9E-15 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 5.0E-16 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 19-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.7E-36 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.7E-36 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.7E-36 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 3.2E-36 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 PANTHER PTHR15893 1 81 2.3E-43 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 Gene3D G3DSA:2.40.50.100 20 84 8.4E-30 T 19-04-2016 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 Pfam PF01016 Ribosomal L27 protein 2 80 3.6E-36 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 SUPERFAMILY SSF110324 2 83 1.01E-31 T 19-04-2016 AMED_6705 bcc297f2212d4ef6f78a64bae3e3bced 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 27.442 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0414 c97014bd0d91db0b691c329283b2d763 69 Gene3D G3DSA:1.10.10.10 43 66 2.4E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0414 c97014bd0d91db0b691c329283b2d763 69 Pfam PF08281 Sigma-70, region 4 30 68 4.5E-6 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0414 c97014bd0d91db0b691c329283b2d763 69 SUPERFAMILY SSF88659 39 65 8.5E-6 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8829 1664fd3f18efbb06ffb095db5d425908 199 ProSitePatterns PS00194 Thioredoxin family active site. 88 106 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMED_8829 1664fd3f18efbb06ffb095db5d425908 199 SUPERFAMILY SSF52833 72 180 1.34E-18 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_8829 1664fd3f18efbb06ffb095db5d425908 199 PANTHER PTHR10438 38 123 3.8E-14 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_8829 1664fd3f18efbb06ffb095db5d425908 199 Pfam PF08534 Redoxin 56 177 2.5E-10 T 19-04-2016 IPR013740 Redoxin GO:0016491 AMED_8829 1664fd3f18efbb06ffb095db5d425908 199 Gene3D G3DSA:3.40.30.10 7 196 2.3E-23 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_8829 1664fd3f18efbb06ffb095db5d425908 199 PANTHER PTHR10438:SF244 38 123 3.8E-14 T 19-04-2016 AMED_8914 2bc81fdbc6dc10f98173821d1dd5dd8a 117 Pfam PF01638 HxlR-like helix-turn-helix 21 108 4.4E-27 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_8914 2bc81fdbc6dc10f98173821d1dd5dd8a 117 SUPERFAMILY SSF46785 9 115 5.69E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8914 2bc81fdbc6dc10f98173821d1dd5dd8a 117 Gene3D G3DSA:1.10.10.10 7 116 2.2E-38 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8914 2bc81fdbc6dc10f98173821d1dd5dd8a 117 PANTHER PTHR33204 1 116 1.9E-36 T 19-04-2016 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 54 2.5E-20 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 PANTHER PTHR15238 3 53 2.4E-20 T 19-04-2016 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 PANTHER PTHR15238:SF3 3 53 2.4E-20 T 19-04-2016 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 SUPERFAMILY SSF57829 4 54 1.04E-19 T 19-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 6 54 19.517 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 Pfam PF00471 Ribosomal protein L33 9 54 2.9E-22 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0586 1a46417a0858e18b462e841a7cd04790 54 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 19-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7279 ce92b0e74e197b10784fe98bef5eeeef 210 PANTHER PTHR30389:SF5 7 203 5.9E-32 T 19-04-2016 AMED_7279 ce92b0e74e197b10784fe98bef5eeeef 210 Pfam PF05683 Fumarase C-terminus 5 183 5.6E-20 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_7279 ce92b0e74e197b10784fe98bef5eeeef 210 PANTHER PTHR30389 7 203 5.9E-32 T 19-04-2016 AMED_7279 ce92b0e74e197b10784fe98bef5eeeef 210 SUPERFAMILY SSF117457 6 181 8.11E-34 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_7279 ce92b0e74e197b10784fe98bef5eeeef 210 Gene3D G3DSA:3.20.130.10 4 182 4.2E-42 T 19-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMED_7838 2ad05cf272e7f6738cc6252b70c6a804 91 Pfam PF02325 YGGT family 10 88 3.5E-13 T 19-04-2016 IPR003425 CCB3/YggT GO:0016020 AMED_3826 e904691c44d744ffc8cdbe33ff735473 273 SUPERFAMILY SSF52096 2 258 7.67E-75 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3826 e904691c44d744ffc8cdbe33ff735473 273 Gene3D G3DSA:3.90.226.10 4 256 6.2E-71 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3826 e904691c44d744ffc8cdbe33ff735473 273 PANTHER PTHR11941:SF95 3 256 3.0E-80 T 19-04-2016 AMED_3826 e904691c44d744ffc8cdbe33ff735473 273 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 7.8E-46 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3826 e904691c44d744ffc8cdbe33ff735473 273 PANTHER PTHR11941 3 256 3.0E-80 T 19-04-2016 AMED_8492 95721023901e4e34244bd91c3d998764 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 2.1E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8492 95721023901e4e34244bd91c3d998764 194 Gene3D G3DSA:1.10.357.10 5 190 8.7E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8492 95721023901e4e34244bd91c3d998764 194 SUPERFAMILY SSF46689 5 84 4.19E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8492 95721023901e4e34244bd91c3d998764 194 PANTHER PTHR30055 1 192 1.3E-20 T 19-04-2016 AMED_8492 95721023901e4e34244bd91c3d998764 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8492 95721023901e4e34244bd91c3d998764 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8492 95721023901e4e34244bd91c3d998764 194 PANTHER PTHR30055:SF8 1 192 1.3E-20 T 19-04-2016 AMED_0761 2b5a97f973920245cde41cd1cbb5e8d8 151 Gene3D G3DSA:3.10.180.10 6 117 7.1E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0761 2b5a97f973920245cde41cd1cbb5e8d8 151 SUPERFAMILY SSF54593 5 120 2.95E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0761 2b5a97f973920245cde41cd1cbb5e8d8 151 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 93 4.2E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_0761 2b5a97f973920245cde41cd1cbb5e8d8 151 PANTHER PTHR41294:SF1 2 150 7.2E-58 T 19-04-2016 AMED_0761 2b5a97f973920245cde41cd1cbb5e8d8 151 PANTHER PTHR41294 2 150 7.2E-58 T 19-04-2016 AMED_1244 aeb5100d540727328976bb5c1926881a 368 PANTHER PTHR10046 241 364 1.0E-40 T 19-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 AMED_1244 aeb5100d540727328976bb5c1926881a 368 SMART SM00228 156 220 2.2E-4 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_1244 aeb5100d540727328976bb5c1926881a 368 SUPERFAMILY SSF50156 163 265 7.06E-16 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_1244 aeb5100d540727328976bb5c1926881a 368 SUPERFAMILY SSF54211 253 356 3.49E-21 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_1244 aeb5100d540727328976bb5c1926881a 368 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 264 355 7.0E-12 T 19-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 AMED_1244 aeb5100d540727328976bb5c1926881a 368 Gene3D G3DSA:2.30.42.10 164 237 2.9E-15 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_1244 aeb5100d540727328976bb5c1926881a 368 Gene3D G3DSA:3.30.230.10 254 355 1.1E-23 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_1244 aeb5100d540727328976bb5c1926881a 368 PANTHER PTHR10046:SF48 241 364 1.0E-40 T 19-04-2016 AMED_1244 aeb5100d540727328976bb5c1926881a 368 Pfam PF13180 PDZ domain 164 223 1.5E-8 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_0214 d1910aec81dbdbddc92fbb24a00f4444 414 Pfam PF05893 Acyl-CoA reductase (LuxC) 89 408 3.9E-37 T 19-04-2016 IPR008670 Acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723|UniPathway: UPA00569 AMED_0214 d1910aec81dbdbddc92fbb24a00f4444 414 SUPERFAMILY SSF53720 84 148 4.77E-6 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_5712 2d1ff27ffe8f7fa418144ab2f8db540d 96 Gene3D G3DSA:3.30.70.1060 8 94 7.6E-30 T 19-04-2016 AMED_5712 2d1ff27ffe8f7fa418144ab2f8db540d 96 PANTHER PTHR35174:SF3 10 91 2.4E-18 T 19-04-2016 AMED_5712 2d1ff27ffe8f7fa418144ab2f8db540d 96 PANTHER PTHR35174 10 91 2.4E-18 T 19-04-2016 AMED_5712 2d1ff27ffe8f7fa418144ab2f8db540d 96 Pfam PF03795 YCII-related domain 9 81 1.7E-14 T 19-04-2016 IPR005545 YCII-related AMED_5712 2d1ff27ffe8f7fa418144ab2f8db540d 96 SUPERFAMILY SSF54909 8 92 6.7E-24 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7033 f53003a3c389479744ad4fb8c309caba 199 PANTHER PTHR13256:SF10 1 184 4.5E-43 T 19-04-2016 AMED_7033 f53003a3c389479744ad4fb8c309caba 199 SUPERFAMILY SSF55729 2 161 1.73E-39 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7033 f53003a3c389479744ad4fb8c309caba 199 Gene3D G3DSA:3.40.630.30 1 185 2.9E-49 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7033 f53003a3c389479744ad4fb8c309caba 199 Pfam PF13302 Acetyltransferase (GNAT) domain 9 152 1.5E-30 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7033 f53003a3c389479744ad4fb8c309caba 199 PANTHER PTHR13256 1 184 4.5E-43 T 19-04-2016 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 67 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 7.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 7.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 SUPERFAMILY SSF48498 89 195 1.46E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 SUPERFAMILY SSF46689 11 90 8.48E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 PANTHER PTHR30055 7 166 1.3E-30 T 19-04-2016 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 1.2E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 PANTHER PTHR30055:SF43 7 166 1.3E-30 T 19-04-2016 AMED_1086 9e556180f79ac07ffa0acb46d72d33a7 221 Gene3D G3DSA:1.10.357.10 13 200 3.5E-47 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 SUPERFAMILY SSF46785 23 164 3.31E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 PANTHER PTHR33164 14 163 2.1E-21 T 19-04-2016 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 Gene3D G3DSA:1.10.10.10 23 165 5.0E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 109 2.39E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 129 2.39E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 143 163 2.39E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 SMART SM00347 53 153 3.5E-17 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 PANTHER PTHR33164:SF4 14 163 2.1E-21 T 19-04-2016 AMED_5255 3e2bea678ed51be0d21530038e8c5a10 176 Pfam PF01047 MarR family 61 118 6.2E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0133 015071ff373a679487172271927e82ce 462 SUPERFAMILY SSF49785 325 461 3.23E-33 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0133 015071ff373a679487172271927e82ce 462 PANTHER PTHR10963 5 317 7.9E-119 T 19-04-2016 AMED_0133 015071ff373a679487172271927e82ce 462 Pfam PF00722 Glycosyl hydrolases family 16 102 258 3.4E-9 T 19-04-2016 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 AMED_0133 015071ff373a679487172271927e82ce 462 PANTHER PTHR10963:SF41 5 317 7.9E-119 T 19-04-2016 AMED_0133 015071ff373a679487172271927e82ce 462 Pfam PF03422 Carbohydrate binding module (family 6) 334 461 1.5E-39 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_0133 015071ff373a679487172271927e82ce 462 Gene3D G3DSA:2.60.120.260 328 460 4.7E-41 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0133 015071ff373a679487172271927e82ce 462 SUPERFAMILY SSF49899 29 306 2.49E-45 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_0133 015071ff373a679487172271927e82ce 462 SMART SM00606 326 462 2.8E-51 T 19-04-2016 IPR006584 Cellulose binding, type IV GO:0030246 AMED_0133 015071ff373a679487172271927e82ce 462 Gene3D G3DSA:2.60.120.200 23 319 5.5E-49 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 Pfam PF00902 Sec-independent protein translocase protein (TatC) 33 255 2.8E-58 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 31 262 1.2E-62 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 PANTHER PTHR30371:SF0 4 295 2.4E-83 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 25 280 17.312 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 ProSitePatterns PS01218 TatC family signature. 189 208 - T 19-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 30 57 1.5E-35 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 139 165 1.5E-35 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 189 217 1.5E-35 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 121 139 1.5E-35 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMED_4881 242a2655ae60fadc0471bfe1df48aeb8 323 PANTHER PTHR30371 4 295 2.4E-83 T 19-04-2016 AMED_9117 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 67 75 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_9117 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 SUPERFAMILY SSF54292 14 83 8.13E-17 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_9117 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 Gene3D G3DSA:3.10.20.30 15 82 2.0E-15 T 19-04-2016 IPR012675 Beta-grasp domain AMED_9117 9f5b1d06fa60f9fbed24cf5260a3d8f7 98 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 39 77 3.4E-7 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_8110 3fa6e2589dc1c0ff0801652e67391120 277 PANTHER PTHR41282:SF1 2 277 1.9E-63 T 19-04-2016 AMED_8110 3fa6e2589dc1c0ff0801652e67391120 277 PIRSF PIRSF009160 1 277 6.4E-81 T 19-04-2016 IPR010539 Protein of unknown function UCP009160 AMED_8110 3fa6e2589dc1c0ff0801652e67391120 277 PANTHER PTHR41282 2 277 1.9E-63 T 19-04-2016 AMED_8110 3fa6e2589dc1c0ff0801652e67391120 277 Pfam PF12811 Bax inhibitor 1 like 43 276 3.9E-87 T 19-04-2016 IPR010539 Protein of unknown function UCP009160 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 Gene3D G3DSA:1.10.357.10 62 261 1.9E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 SUPERFAMILY SSF48498 137 255 1.21E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 PANTHER PTHR30055 57 227 2.2E-24 T 19-04-2016 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 Pfam PF00440 Bacterial regulatory proteins, tetR family 73 118 7.0E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 SUPERFAMILY SSF46689 59 139 1.54E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 93 116 6.0E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 73 86 6.0E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6474 f5d65dea29e879d8c6e60d728670433c 290 PANTHER PTHR30055:SF43 57 227 2.2E-24 T 19-04-2016 AMED_8837 356c49d4427411428de0b76e3378d8c7 121 Pfam PF01037 Lrp/AsnC ligand binding domain 45 113 1.2E-11 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8837 356c49d4427411428de0b76e3378d8c7 121 PANTHER PTHR30154 5 117 7.7E-23 T 19-04-2016 AMED_8837 356c49d4427411428de0b76e3378d8c7 121 PANTHER PTHR30154:SF12 5 117 7.7E-23 T 19-04-2016 AMED_8837 356c49d4427411428de0b76e3378d8c7 121 Gene3D G3DSA:3.30.70.920 40 116 3.0E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8837 356c49d4427411428de0b76e3378d8c7 121 SUPERFAMILY SSF54909 37 118 2.82E-12 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8998 864b29921b21ea1f3516f16445347fb5 187 PANTHER PTHR10885 10 166 6.7E-33 T 19-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 AMED_8998 864b29921b21ea1f3516f16445347fb5 187 Gene3D G3DSA:3.90.79.10 6 176 4.3E-38 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8998 864b29921b21ea1f3516f16445347fb5 187 PIRSF PIRSF018427 2 183 1.3E-45 T 19-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 AMED_8998 864b29921b21ea1f3516f16445347fb5 187 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 12 173 6.8E-36 T 19-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 AMED_8998 864b29921b21ea1f3516f16445347fb5 187 SUPERFAMILY SSF55811 10 174 5.15E-39 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8998 864b29921b21ea1f3516f16445347fb5 187 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 10 186 28.915 T 19-04-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 AMED_8998 864b29921b21ea1f3516f16445347fb5 187 Pfam PF00293 NUDIX domain 38 159 4.3E-19 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_9163 749aeece2ab60ac3312f7396eb2bd1cb 142 PANTHER PTHR30204 9 103 1.2E-34 T 19-04-2016 AMED_9163 749aeece2ab60ac3312f7396eb2bd1cb 142 SUPERFAMILY SSF46955 18 104 2.06E-19 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_9163 749aeece2ab60ac3312f7396eb2bd1cb 142 SMART SM00422 17 86 1.1E-23 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_9163 749aeece2ab60ac3312f7396eb2bd1cb 142 PANTHER PTHR30204:SF8 9 103 1.2E-34 T 19-04-2016 AMED_9163 749aeece2ab60ac3312f7396eb2bd1cb 142 Gene3D G3DSA:1.10.1660.10 19 105 1.6E-21 T 19-04-2016 AMED_9163 749aeece2ab60ac3312f7396eb2bd1cb 142 Pfam PF13411 MerR HTH family regulatory protein 19 84 4.4E-16 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1941 93668388054bed60ca653beac4cdeca3 452 Gene3D G3DSA:1.10.3430.10 1 402 1.1E-131 T 19-04-2016 IPR029020 Ammonium/urea transporter AMED_1941 93668388054bed60ca653beac4cdeca3 452 TIGRFAM TIGR00836 amt: ammonium transporter 1 421 1.5E-137 T 19-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMED_1941 93668388054bed60ca653beac4cdeca3 452 PANTHER PTHR11730 97 427 2.0E-176 T 19-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMED_1941 93668388054bed60ca653beac4cdeca3 452 PANTHER PTHR11730 1 79 2.0E-176 T 19-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMED_1941 93668388054bed60ca653beac4cdeca3 452 Pfam PF00909 Ammonium Transporter Family 1 421 1.2E-128 T 19-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMED_1941 93668388054bed60ca653beac4cdeca3 452 PANTHER PTHR11730:SF17 97 427 2.0E-176 T 19-04-2016 AMED_1941 93668388054bed60ca653beac4cdeca3 452 SUPERFAMILY SSF111352 2 402 1.57E-119 T 19-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMED_1941 93668388054bed60ca653beac4cdeca3 452 ProSitePatterns PS01219 Ammonium transporters signature. 176 201 - T 19-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMED_1941 93668388054bed60ca653beac4cdeca3 452 PANTHER PTHR11730:SF17 1 79 2.0E-176 T 19-04-2016 AMED_4954 aed5ce969727591b5d3f984cc6f6953c 439 Pfam PF00877 NlpC/P60 family 315 422 1.5E-22 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_4954 aed5ce969727591b5d3f984cc6f6953c 439 PANTHER PTHR21666 346 433 5.8E-23 T 19-04-2016 AMED_4954 aed5ce969727591b5d3f984cc6f6953c 439 PANTHER PTHR21666 29 37 5.8E-23 T 19-04-2016 AMED_4954 aed5ce969727591b5d3f984cc6f6953c 439 PANTHER PTHR21666 306 324 5.8E-23 T 19-04-2016 AMED_4954 aed5ce969727591b5d3f984cc6f6953c 439 Gene3D G3DSA:3.90.1720.10 296 436 1.5E-35 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_4954 aed5ce969727591b5d3f984cc6f6953c 439 SUPERFAMILY SSF54001 298 435 2.06E-29 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 Gene3D G3DSA:2.30.38.10 327 397 2.9E-15 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 Pfam PF13193 AMP-binding enzyme C-terminal domain 416 494 2.9E-22 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 Gene3D G3DSA:3.40.50.980 164 326 8.4E-35 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 Pfam PF00501 AMP-binding enzyme 5 407 6.0E-75 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 PANTHER PTHR24096 1 504 6.0E-202 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 SUPERFAMILY SSF56801 3 506 5.49E-136 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 Gene3D G3DSA:3.30.300.30 403 504 1.3E-29 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 Gene3D G3DSA:3.40.50.980 4 163 6.6E-33 T 19-04-2016 AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 ProSitePatterns PS00455 Putative AMP-binding domain signature. 157 168 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7197 07dabba1f439901ad27b2b8770c7c7f8 525 PANTHER PTHR24096:SF106 1 504 6.0E-202 T 19-04-2016 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 492 508 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 331 346 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 303 317 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 267 287 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 216 231 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 517 533 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 439 454 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PRINTS PR00743 Glycosyl hydrolase family 36 signature 381 403 7.4E-52 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PIRSF PIRSF005536 2 697 2.2E-180 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 SUPERFAMILY SSF51445 299 625 2.18E-99 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PANTHER PTHR22762:SF81 300 533 2.7E-69 T 19-04-2016 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 Gene3D G3DSA:3.20.20.70 296 605 2.8E-49 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 31 260 6.1E-53 T 19-04-2016 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 PANTHER PTHR22762 300 533 2.7E-69 T 19-04-2016 AMED_1851 f3d696d6fe699bc6d94c9f130e7169c3 698 Pfam PF02065 Melibiase 264 607 1.8E-119 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 PANTHER PTHR30328:SF17 1 90 2.6E-19 T 19-04-2016 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 Gene3D G3DSA:1.10.10.60 3 45 1.4E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 SUPERFAMILY SSF46689 4 49 1.44E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 SUPERFAMILY SSF48498 60 200 1.56E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6652 014f3a07010e93e018ff330a58ac3835 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 3 40 1.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 53 199 7.7E-14 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 Gene3D G3DSA:1.10.357.10 46 198 3.3E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6652 014f3a07010e93e018ff330a58ac3835 204 PANTHER PTHR30328 1 90 2.6E-19 T 19-04-2016 AMED_1630 b0bb5632013150622d0d78a657d8489a 365 Gene3D G3DSA:3.90.1720.10 240 363 1.6E-33 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_1630 b0bb5632013150622d0d78a657d8489a 365 PANTHER PTHR21666 237 362 2.7E-21 T 19-04-2016 AMED_1630 b0bb5632013150622d0d78a657d8489a 365 SUPERFAMILY SSF54001 243 351 1.08E-29 T 19-04-2016 AMED_1630 b0bb5632013150622d0d78a657d8489a 365 SUPERFAMILY SSF53955 88 207 9.0E-9 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_1630 b0bb5632013150622d0d78a657d8489a 365 Pfam PF00877 NlpC/P60 family 257 351 4.1E-21 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_1600 23c64d4d6b450f3d5b681658b9c24b57 100 PANTHER PTHR33777:SF1 1 100 1.7E-25 T 19-04-2016 AMED_1600 23c64d4d6b450f3d5b681658b9c24b57 100 SUPERFAMILY SSF89957 2 98 3.53E-28 T 19-04-2016 IPR029756 MTH1187/YkoF-like AMED_1600 23c64d4d6b450f3d5b681658b9c24b57 100 Gene3D G3DSA:3.30.70.930 1 98 4.4E-34 T 19-04-2016 IPR029756 MTH1187/YkoF-like AMED_1600 23c64d4d6b450f3d5b681658b9c24b57 100 PANTHER PTHR33777 1 100 1.7E-25 T 19-04-2016 AMED_1600 23c64d4d6b450f3d5b681658b9c24b57 100 Pfam PF01910 Thiamine-binding protein 3 94 2.0E-28 T 19-04-2016 IPR002767 Thiamine-binding protein AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PANTHER PTHR24322 155 185 9.2E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PANTHER PTHR24322 11 139 9.2E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 SUPERFAMILY SSF51735 5 246 1.86E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 1.6E-56 T 19-04-2016 AMED_3126 ac1b546b6f0b7a2671948c820110d6d4 250 Gene3D G3DSA:3.40.50.720 3 246 3.8E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2780 5004c2acef117893a8d986b43314d1df 330 Hamap MF_00973 Gluconeogenesis factor. 1 314 30.418 T 19-04-2016 IPR010119 Gluconeogenesis factor AMED_2780 5004c2acef117893a8d986b43314d1df 330 Gene3D G3DSA:3.40.50.10680 75 313 7.0E-43 T 19-04-2016 AMED_2780 5004c2acef117893a8d986b43314d1df 330 SUPERFAMILY SSF142338 2 308 1.7E-80 T 19-04-2016 AMED_2780 5004c2acef117893a8d986b43314d1df 330 PANTHER PTHR30135:SF3 2 280 5.6E-97 T 19-04-2016 AMED_2780 5004c2acef117893a8d986b43314d1df 330 Pfam PF01933 Uncharacterised protein family UPF0052 4 277 3.6E-70 T 19-04-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 AMED_2780 5004c2acef117893a8d986b43314d1df 330 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 4 277 4.1E-84 T 19-04-2016 IPR010119 Gluconeogenesis factor AMED_2780 5004c2acef117893a8d986b43314d1df 330 PANTHER PTHR30135 2 280 5.6E-97 T 19-04-2016 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 SUPERFAMILY SSF51905 267 357 1.58E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 SUPERFAMILY SSF51905 2 166 1.58E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 Gene3D G3DSA:3.50.50.60 268 346 1.4E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 Gene3D G3DSA:3.50.50.60 2 171 1.4E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PANTHER PTHR13789 1 361 4.0E-120 T 19-04-2016 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PANTHER PTHR13789:SF174 1 361 4.0E-120 T 19-04-2016 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 Pfam PF01494 FAD binding domain 2 319 6.2E-14 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 3.2E-14 T 19-04-2016 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.2E-14 T 19-04-2016 AMED_2377 2fc5f0ba87ffc9a3bde96adb36afe9a5 369 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 3.2E-14 T 19-04-2016 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 Gene3D G3DSA:3.40.50.1970 9 183 3.9E-49 T 19-04-2016 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 19-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 19-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 Gene3D G3DSA:1.20.1090.10 184 376 3.8E-53 T 19-04-2016 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 SUPERFAMILY SSF56796 10 375 3.66E-104 T 19-04-2016 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 368 3.1E-103 T 19-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 AMED_6206 cebbf2602b12d0da2a1689c994cfd836 376 PANTHER PTHR11496 10 376 9.2E-94 T 19-04-2016 AMED_7592 2a23c69c7e2903c910ebbc71e1112bea 111 Gene3D G3DSA:3.30.750.24 7 111 1.7E-21 T 19-04-2016 IPR002645 STAS domain AMED_7592 2a23c69c7e2903c910ebbc71e1112bea 111 PANTHER PTHR33495:SF2 5 111 9.3E-22 T 19-04-2016 AMED_7592 2a23c69c7e2903c910ebbc71e1112bea 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 6 108 2.3E-18 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_7592 2a23c69c7e2903c910ebbc71e1112bea 111 PANTHER PTHR33495 5 111 9.3E-22 T 19-04-2016 AMED_7592 2a23c69c7e2903c910ebbc71e1112bea 111 Pfam PF13466 STAS domain 19 96 8.9E-10 T 19-04-2016 IPR002645 STAS domain AMED_7592 2a23c69c7e2903c910ebbc71e1112bea 111 SUPERFAMILY SSF52091 8 111 3.53E-18 T 19-04-2016 IPR002645 STAS domain AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 PANTHER PTHR32243:SF40 161 306 3.5E-80 T 19-04-2016 AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 PANTHER PTHR32243:SF40 10 145 3.5E-80 T 19-04-2016 AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 SUPERFAMILY SSF161098 65 293 1.02E-53 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 Gene3D G3DSA:1.10.3720.10 11 296 4.9E-55 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 PANTHER PTHR32243 10 145 3.5E-80 T 19-04-2016 AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 PANTHER PTHR32243 161 306 3.5E-80 T 19-04-2016 AMED_3316 3118b670cb7d1ce7c34c63687e1458dc 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 294 4.1E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 PANTHER PTHR13847 3 350 4.8E-75 T 19-04-2016 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 Pfam PF01266 FAD dependent oxidoreductase 4 332 1.5E-54 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 Gene3D G3DSA:3.50.50.60 296 353 2.0E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 Gene3D G3DSA:3.50.50.60 139 190 2.0E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 Gene3D G3DSA:3.50.50.60 1 82 2.0E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 5 336 1.0E-91 T 19-04-2016 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 UniPathway: UPA00060 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 SUPERFAMILY SSF54373 202 294 2.22E-15 T 19-04-2016 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 Gene3D G3DSA:3.30.9.10 191 294 9.2E-27 T 19-04-2016 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 SUPERFAMILY SSF51905 3 204 9.06E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 SUPERFAMILY SSF51905 296 351 9.06E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8578 feae34471639c0554a33e0d158cd1abb 357 PANTHER PTHR13847:SF180 3 350 4.8E-75 T 19-04-2016 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 28 313 5.8E-145 T 19-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 PIRSF PIRSF029271 15 313 3.1E-151 T 19-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 Gene3D G3DSA:3.20.20.70 211 297 6.4E-49 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 Gene3D G3DSA:3.20.20.70 43 179 6.4E-49 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 Pfam PF01680 SOR/SNZ family 26 231 4.4E-107 T 19-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 ProSitePatterns PS01235 PdxS/SNZ family signature. 224 242 - T 19-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 SUPERFAMILY SSF51366 37 286 2.45E-62 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 23 313 53.396 T 19-04-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 AMED_5314 163b54fb38a143ad8dd0bdca1201cdf2 313 PANTHER PTHR31829 23 313 1.2E-215 T 19-04-2016 AMED_6092 dbf8352af79f5b405a10c75e4858881c 126 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 2 125 27.362 T 19-04-2016 IPR023006 Uncharacterised protein family UPF0225 AMED_6092 dbf8352af79f5b405a10c75e4858881c 126 Gene3D G3DSA:3.10.450.50 5 125 8.0E-40 T 19-04-2016 IPR032710 NTF2-like domain AMED_6092 dbf8352af79f5b405a10c75e4858881c 126 SUPERFAMILY SSF54427 27 125 8.76E-32 T 19-04-2016 IPR032710 NTF2-like domain AMED_6092 dbf8352af79f5b405a10c75e4858881c 126 PANTHER PTHR33747 1 124 2.2E-13 T 19-04-2016 AMED_5753 152dac1d798c3df40973c5c963a1687b 443 PANTHER PTHR11785:SF125 5 302 3.1E-15 T 19-04-2016 AMED_5753 152dac1d798c3df40973c5c963a1687b 443 PIRSF PIRSF006060 2 443 2.1E-10 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_5753 152dac1d798c3df40973c5c963a1687b 443 PANTHER PTHR11785 5 302 3.1E-15 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 SUPERFAMILY SSF103473 8 412 5.23E-73 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4156 85ca03258d1a73e695de571366c25b6f 426 PANTHER PTHR23508:SF10 8 415 2.0E-137 T 19-04-2016 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 Gene3D G3DSA:1.20.1250.20 17 205 2.7E-34 T 19-04-2016 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 Gene3D G3DSA:1.20.1250.20 225 406 2.9E-19 T 19-04-2016 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 PANTHER PTHR23508 8 415 2.0E-137 T 19-04-2016 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 Pfam PF07690 Major Facilitator Superfamily 27 240 1.3E-28 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4156 85ca03258d1a73e695de571366c25b6f 426 Pfam PF07690 Major Facilitator Superfamily 261 401 3.9E-11 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 SUPERFAMILY SSF46689 2 70 7.7E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 Gene3D G3DSA:1.10.10.10 2 72 3.8E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 71 1.2E-16 T 19-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 SUPERFAMILY SSF53697 95 278 4.61E-44 T 19-04-2016 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 Pfam PF01380 SIS domain 127 253 7.0E-26 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 Gene3D G3DSA:3.40.50.10490 105 259 7.0E-40 T 19-04-2016 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 PANTHER PTHR30514:SF1 2 294 1.6E-77 T 19-04-2016 AMED_8811 d42cbcd14108c8a75999cc412bd23d14 294 PANTHER PTHR30514 2 294 1.6E-77 T 19-04-2016 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 PANTHER PTHR11695 291 394 7.4E-145 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 PANTHER PTHR11695 12 256 7.4E-145 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 3.8E-15 T 19-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 SUPERFAMILY SSF51735 156 351 4.45E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 PANTHER PTHR11695:SF281 291 394 7.4E-145 T 19-04-2016 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 PANTHER PTHR11695:SF281 12 256 7.4E-145 T 19-04-2016 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 SUPERFAMILY SSF50129 1 188 3.77E-59 T 19-04-2016 IPR011032 GroES-like AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 Pfam PF00107 Zinc-binding dehydrogenase 189 258 1.4E-14 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 143 3.3E-29 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 Gene3D G3DSA:3.90.180.10 1 178 1.7E-52 T 19-04-2016 IPR011032 GroES-like AMED_4283 b5081e2df87ebe992b7b4280d0e28062 396 Gene3D G3DSA:3.40.50.720 179 348 5.7E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1369 99927b3eeb2880ede9463ab5adf3bc24 543 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 269 535 3.3E-74 T 19-04-2016 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AMED_1369 99927b3eeb2880ede9463ab5adf3bc24 543 PANTHER PTHR32502 252 536 1.1E-51 T 19-04-2016 AMED_1369 99927b3eeb2880ede9463ab5adf3bc24 543 PANTHER PTHR32502:SF7 252 536 1.1E-51 T 19-04-2016 AMED_1369 99927b3eeb2880ede9463ab5adf3bc24 543 Pfam PF03609 PTS system sorbose-specific iic component 2 238 1.6E-54 T 19-04-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 351 360 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 Pfam PF00067 Cytochrome P450 280 379 6.5E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 Gene3D G3DSA:1.10.630.10 11 410 1.2E-105 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 SUPERFAMILY SSF48264 19 409 1.57E-83 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 349 358 6.5E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 281 292 6.5E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 299 326 6.5E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 199 221 6.5E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 358 369 6.5E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PRINTS PR00359 B-class P450 signature 145 161 6.5E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PANTHER PTHR24286:SF42 19 418 4.6E-74 T 19-04-2016 AMED_7339 2e16584e141ff15c50a018f079bc80e8 422 PANTHER PTHR24286 19 418 4.6E-74 T 19-04-2016 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 PRINTS PR00364 Disease resistance protein signature 357 371 2.2E-9 T 19-04-2016 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 PRINTS PR00364 Disease resistance protein signature 441 455 2.2E-9 T 19-04-2016 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 PRINTS PR00364 Disease resistance protein signature 285 300 2.2E-9 T 19-04-2016 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:1.10.10.10 25 78 1.6E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SMART SM00862 17 89 6.0E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 PANTHER PTHR22845 138 567 7.8E-80 T 19-04-2016 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF52540 249 509 2.74E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 Pfam PF00931 NB-ARC domain 281 509 2.8E-13 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SMART SM01043 96 237 4.5E-48 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 PANTHER PTHR22845:SF4 138 567 7.8E-80 T 19-04-2016 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF48452 647 834 1.47E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF48452 843 966 1.08E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:3.40.50.300 265 380 2.1E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF48452 91 256 3.41E-32 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 77 3.8E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 SUPERFAMILY SSF46894 3 89 1.53E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 Gene3D G3DSA:1.25.40.10 692 971 4.8E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8011 ecb796c26aeb90028879de7a3ce6293e 975 Pfam PF03704 Bacterial transcriptional activator domain 96 237 1.7E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 Gene3D G3DSA:3.90.79.10 17 156 1.3E-36 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 ProSitePatterns PS00893 Nudix box signature. 58 79 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 SUPERFAMILY SSF55811 20 160 1.22E-27 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 PANTHER PTHR22769:SF42 39 156 2.2E-25 T 19-04-2016 AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 Pfam PF00293 NUDIX domain 24 136 1.1E-17 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 PRINTS PR00502 NUDIX hydrolase family signature 67 82 1.2E-6 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 PRINTS PR00502 NUDIX hydrolase family signature 53 67 1.2E-6 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_6169 1585fe3c3837be4abc912a0e43ec490c 174 PANTHER PTHR22769 39 156 2.2E-25 T 19-04-2016 AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 Gene3D G3DSA:3.10.129.10 66 161 6.5E-6 T 19-04-2016 IPR029069 HotDog domain AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 PANTHER PTHR13078 2 248 2.7E-53 T 19-04-2016 AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 PRINTS PR01483 Fatty acid synthase signature 180 202 7.4E-6 T 19-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 PRINTS PR01483 Fatty acid synthase signature 202 223 7.4E-6 T 19-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 SUPERFAMILY SSF54637 174 277 1.55E-22 T 19-04-2016 IPR029069 HotDog domain AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 Pfam PF01575 MaoC like domain 184 256 5.7E-15 T 19-04-2016 IPR002539 MaoC-like domain AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 PANTHER PTHR13078:SF54 2 248 2.7E-53 T 19-04-2016 AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 SUPERFAMILY SSF54637 66 163 4.88E-10 T 19-04-2016 IPR029069 HotDog domain AMED_9232 7defdd15c06e591e7f6a2c21fcdad4e5 280 Gene3D G3DSA:3.10.129.10 175 266 4.2E-24 T 19-04-2016 IPR029069 HotDog domain AMED_4430 1a513f745e5b3a8e0145bd3565faa4dc 324 PANTHER PTHR30193 5 322 2.9E-130 T 19-04-2016 AMED_4430 1a513f745e5b3a8e0145bd3565faa4dc 324 Gene3D G3DSA:1.10.3720.10 28 308 5.8E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4430 1a513f745e5b3a8e0145bd3565faa4dc 324 PANTHER PTHR30193:SF1 5 322 2.9E-130 T 19-04-2016 AMED_4430 1a513f745e5b3a8e0145bd3565faa4dc 324 SUPERFAMILY SSF161098 77 305 1.06E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4430 1a513f745e5b3a8e0145bd3565faa4dc 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 306 1.5E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3818 5834f6902dd64605afa0516ec917d987 251 Gene3D G3DSA:3.40.50.720 2 250 1.9E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.4E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.4E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.4E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.4E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.4E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.4E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 SUPERFAMILY SSF51735 5 250 6.0E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 5.7E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.7E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.7E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 250 1.2E-48 T 19-04-2016 AMED_3818 5834f6902dd64605afa0516ec917d987 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3818 5834f6902dd64605afa0516ec917d987 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 197 6.9E-5 T 19-04-2016 AMED_3818 5834f6902dd64605afa0516ec917d987 251 PANTHER PTHR24322 14 142 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3818 5834f6902dd64605afa0516ec917d987 251 PANTHER PTHR24322 158 193 1.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9343 72cff8cee9942248f303c6d356811e75 635 Pfam PF14021 Protein of unknown function (DUF4237) 550 633 1.7E-15 T 19-04-2016 IPR025331 Protein of unknown function DUF4237 AMED_9343 72cff8cee9942248f303c6d356811e75 635 SUPERFAMILY SSF160424 146 282 3.27E-14 T 19-04-2016 IPR006728 Protein of unknown function DUF600 AMED_2392 fe7a9d1fac18deced9e77be2a030505e 154 Gene3D G3DSA:3.10.350.10 101 148 4.5E-7 T 19-04-2016 IPR018392 LysM domain AMED_2392 fe7a9d1fac18deced9e77be2a030505e 154 Pfam PF01476 LysM domain 101 147 2.7E-6 T 19-04-2016 IPR018392 LysM domain AMED_3787 70ab493990a6945c40d136e338aa6008 358 SUPERFAMILY SSF56042 180 353 1.29E-44 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_3787 70ab493990a6945c40d136e338aa6008 358 PANTHER PTHR30303:SF0 24 358 9.5E-148 T 19-04-2016 AMED_3787 70ab493990a6945c40d136e338aa6008 358 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 28 358 3.9E-136 T 19-04-2016 IPR011854 Hydrogenase expression/formation protein HypE AMED_3787 70ab493990a6945c40d136e338aa6008 358 Gene3D G3DSA:3.90.650.10 182 340 9.0E-26 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_3787 70ab493990a6945c40d136e338aa6008 358 Pfam PF02769 AIR synthase related protein, C-terminal domain 184 330 1.0E-24 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_3787 70ab493990a6945c40d136e338aa6008 358 Pfam PF00586 AIR synthase related protein, N-terminal domain 62 172 1.9E-17 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_3787 70ab493990a6945c40d136e338aa6008 358 PIRSF PIRSF005644 24 358 1.5E-122 T 19-04-2016 IPR011854 Hydrogenase expression/formation protein HypE AMED_3787 70ab493990a6945c40d136e338aa6008 358 Gene3D G3DSA:3.30.1330.10 42 174 1.2E-24 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_3787 70ab493990a6945c40d136e338aa6008 358 SUPERFAMILY SSF55326 28 175 1.92E-33 T 19-04-2016 AMED_3787 70ab493990a6945c40d136e338aa6008 358 PANTHER PTHR30303 24 358 9.5E-148 T 19-04-2016 AMED_1619 d2933b1f4026702c410593296d0a37f2 318 SUPERFAMILY SSF51445 42 290 1.98E-19 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1619 d2933b1f4026702c410593296d0a37f2 318 PANTHER PTHR11177:SF203 5 288 1.3E-65 T 19-04-2016 AMED_1619 d2933b1f4026702c410593296d0a37f2 318 PANTHER PTHR11177 5 288 1.3E-65 T 19-04-2016 AMED_1619 d2933b1f4026702c410593296d0a37f2 318 Pfam PF00704 Glycosyl hydrolases family 18 54 238 1.8E-10 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_1619 d2933b1f4026702c410593296d0a37f2 318 Gene3D G3DSA:3.20.20.80 74 294 4.7E-11 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 SUPERFAMILY SSF47203 228 372 3.87E-21 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 Gene3D G3DSA:2.40.110.10 121 217 1.7E-27 T 19-04-2016 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 Gene3D G3DSA:1.20.140.10 218 374 7.4E-30 T 19-04-2016 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 118 2.8E-17 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 SUPERFAMILY SSF56645 2 240 1.7E-63 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 216 2.7E-17 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 368 7.4E-21 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 Gene3D G3DSA:1.10.540.10 5 119 6.8E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 PANTHER PTHR10909 1 376 2.0E-133 T 19-04-2016 AMED_3387 b25d92283f177ac5f5831a1297919bc8 376 PANTHER PTHR10909:SF229 1 376 2.0E-133 T 19-04-2016 AMED_8755 8b246965f40b5f25b1224053e6526d99 336 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 2 334 1.1E-95 T 19-04-2016 IPR018766 Zinicin-like metallopeptidase type 2 AMED_8755 8b246965f40b5f25b1224053e6526d99 336 TIGRFAM TIGR03883 DUF2342_F420: uncharacterized protein, coenzyme F420 biosynthesis associated 2 335 1.1E-114 T 19-04-2016 IPR022454 Conserved hypothetical protein CHP03883, F420 biosynthesis associated AMED_8755 8b246965f40b5f25b1224053e6526d99 336 PANTHER PTHR39420 1 335 1.5E-107 T 19-04-2016 AMED_8755 8b246965f40b5f25b1224053e6526d99 336 PANTHER PTHR39420:SF1 1 335 1.5E-107 T 19-04-2016 AMED_8755 8b246965f40b5f25b1224053e6526d99 336 Pfam PF10103 Zinicin-like metallopeptidase 2 331 5.0E-105 T 19-04-2016 IPR018766 Zinicin-like metallopeptidase type 2 AMED_8755 8b246965f40b5f25b1224053e6526d99 336 SUPERFAMILY SSF55486 1 334 2.78E-95 T 19-04-2016 AMED_4616 325d7e4e7a94e536e243dac011eea89a 250 Pfam PF13460 NAD(P)H-binding 10 132 3.6E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4616 325d7e4e7a94e536e243dac011eea89a 250 PANTHER PTHR14194 4 249 3.8E-80 T 19-04-2016 AMED_4616 325d7e4e7a94e536e243dac011eea89a 250 SUPERFAMILY SSF51735 5 222 2.47E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4616 325d7e4e7a94e536e243dac011eea89a 250 Gene3D G3DSA:3.40.50.720 5 205 2.1E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4616 325d7e4e7a94e536e243dac011eea89a 250 PANTHER PTHR14194:SF67 4 249 3.8E-80 T 19-04-2016 AMED_0650 f71172b795b182accc86293fe2fe913f 272 Gene3D G3DSA:3.40.50.150 5 248 4.5E-61 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0650 f71172b795b182accc86293fe2fe913f 272 SUPERFAMILY SSF53335 7 271 3.68E-59 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0650 f71172b795b182accc86293fe2fe913f 272 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 47 250 0.0035 T 19-04-2016 IPR020803 Polyketide synthase, methyltransferase domain AMED_0650 f71172b795b182accc86293fe2fe913f 272 PANTHER PTHR10108 249 271 1.9E-41 T 19-04-2016 AMED_0650 f71172b795b182accc86293fe2fe913f 272 PANTHER PTHR10108 11 227 1.9E-41 T 19-04-2016 AMED_0650 f71172b795b182accc86293fe2fe913f 272 Pfam PF08241 Methyltransferase domain 64 161 3.9E-24 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_8802 8cd4587d9953f654bbbe0b66fe8ebafd 58 Pfam PF14029 Protein of unknown function (DUF4244) 3 55 5.7E-23 T 19-04-2016 IPR025338 Protein of unknown function DUF4244 AMED_8879 27b27f6beab1a7336b3362bba5fe9150 396 Pfam PF01139 tRNA-splicing ligase RtcB 28 396 5.2E-131 T 19-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 AMED_8879 27b27f6beab1a7336b3362bba5fe9150 396 SUPERFAMILY SSF103365 9 396 4.45E-131 T 19-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 AMED_8879 27b27f6beab1a7336b3362bba5fe9150 396 PANTHER PTHR11118:SF3 1 396 1.5E-168 T 19-04-2016 AMED_8879 27b27f6beab1a7336b3362bba5fe9150 396 PANTHER PTHR11118 1 396 1.5E-168 T 19-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 SUPERFAMILY SSF51690 142 430 8.37E-85 T 19-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 Gene3D G3DSA:3.20.140.10 9 368 4.5E-92 T 19-04-2016 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 PANTHER PTHR11098:SF8 5 428 2.6E-212 T 19-04-2016 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 SUPERFAMILY SSF54675 10 140 2.5E-41 T 19-04-2016 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 PANTHER PTHR11098 5 428 2.6E-212 T 19-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 12 423 3.3E-133 T 19-04-2016 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 142 311 3.0E-7 T 19-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 AMED_7718 8f361899a44540eeafdcbb60f78db0f9 433 PIRSF PIRSF000484 6 428 1.1E-100 T 19-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 SMART SM00304 324 393 1.4E-4 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 SMART SM00387 505 620 2.4E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 SUPERFAMILY SSF55874 507 617 1.57E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 PANTHER PTHR24423:SF468 414 599 1.7E-30 T 19-04-2016 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 PANTHER PTHR24423:SF468 373 389 1.7E-30 T 19-04-2016 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 PANTHER PTHR24423 414 599 1.7E-30 T 19-04-2016 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 PANTHER PTHR24423 373 389 1.7E-30 T 19-04-2016 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 510 617 2.6E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 Pfam PF00672 HAMP domain 306 389 3.3E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3308 6122cfd89e276fb1da14d862fc6f1631 935 Gene3D G3DSA:3.30.565.10 509 617 4.3E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 PANTHER PTHR30290:SF29 8 569 4.1E-125 T 19-04-2016 AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 PIRSF PIRSF002741 12 556 1.7E-95 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 Gene3D G3DSA:3.10.105.10 321 523 7.0E-44 T 19-04-2016 AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 461 7.5E-84 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 Gene3D G3DSA:3.90.76.10 52 182 7.9E-35 T 19-04-2016 AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 Gene3D G3DSA:3.40.190.10 183 320 6.3E-31 T 19-04-2016 AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 PANTHER PTHR30290 8 569 4.1E-125 T 19-04-2016 AMED_4655 a16a9010f79fd34550e59a6e05a69131 610 SUPERFAMILY SSF53850 38 544 1.74E-119 T 19-04-2016 AMED_7646 113784e3085c55af47fb327eface3740 341 PANTHER PTHR30011:SF4 1 324 4.6E-91 T 19-04-2016 AMED_7646 113784e3085c55af47fb327eface3740 341 Gene3D G3DSA:3.20.20.30 11 334 1.9E-73 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7646 113784e3085c55af47fb327eface3740 341 PANTHER PTHR30011 1 324 4.6E-91 T 19-04-2016 AMED_7646 113784e3085c55af47fb327eface3740 341 SUPERFAMILY SSF51679 9 335 3.53E-67 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7646 113784e3085c55af47fb327eface3740 341 Pfam PF00296 Luciferase-like monooxygenase 12 316 3.1E-79 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8557 e03e6821edd8387f58325ea83afb9be8 207 Gene3D G3DSA:3.60.160.10 1 201 6.4E-32 T 19-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 AMED_8557 e03e6821edd8387f58325ea83afb9be8 207 SUPERFAMILY SSF51219 2 202 1.88E-32 T 19-04-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain AMED_8557 e03e6821edd8387f58325ea83afb9be8 207 Pfam PF01987 Mitochondrial biogenesis AIM24 6 199 9.2E-28 T 19-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 AMED_4199 31405b942b77ebd51cf269dfd85de117 299 PANTHER PTHR13600 19 193 3.6E-44 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4199 31405b942b77ebd51cf269dfd85de117 299 Gene3D G3DSA:3.40.50.150 27 193 3.1E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4199 31405b942b77ebd51cf269dfd85de117 299 PANTHER PTHR13600:SF19 19 193 3.6E-44 T 19-04-2016 AMED_4199 31405b942b77ebd51cf269dfd85de117 299 Pfam PF04072 Leucine carboxyl methyltransferase 30 178 1.3E-5 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4199 31405b942b77ebd51cf269dfd85de117 299 SUPERFAMILY SSF53335 20 203 9.97E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3106 993f692dddec0fec67be8e9a8543fd9d 417 Pfam PF05977 Transmembrane secretion effector 8 400 1.2E-27 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_3106 993f692dddec0fec67be8e9a8543fd9d 417 PANTHER PTHR23513 4 417 2.1E-58 T 19-04-2016 AMED_3106 993f692dddec0fec67be8e9a8543fd9d 417 Gene3D G3DSA:1.20.1250.20 7 193 3.4E-23 T 19-04-2016 AMED_3106 993f692dddec0fec67be8e9a8543fd9d 417 Gene3D G3DSA:1.20.1250.20 217 390 1.3E-12 T 19-04-2016 AMED_3106 993f692dddec0fec67be8e9a8543fd9d 417 SUPERFAMILY SSF103473 7 390 5.36E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9100 cc8808f73c0f3d78b759a1d2a1fd34c8 200 PANTHER PTHR24094 19 200 1.3E-86 T 19-04-2016 AMED_9100 cc8808f73c0f3d78b759a1d2a1fd34c8 200 PANTHER PTHR24094:SF14 19 200 1.3E-86 T 19-04-2016 AMED_9100 cc8808f73c0f3d78b759a1d2a1fd34c8 200 Pfam PF07510 Protein of unknown function (DUF1524) 101 194 1.6E-6 T 19-04-2016 IPR011089 Domain of unknown function DUF1524 AMED_1329 e0833b130f065b4d3c486f87de60221d 525 Pfam PF00754 F5/8 type C domain 403 518 1.2E-25 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_1329 e0833b130f065b4d3c486f87de60221d 525 Gene3D G3DSA:2.60.120.260 396 524 6.2E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1329 e0833b130f065b4d3c486f87de60221d 525 SMART SM00458 186 297 4.2E-15 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1329 e0833b130f065b4d3c486f87de60221d 525 Pfam PF00652 Ricin-type beta-trefoil lectin domain 190 283 4.6E-11 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1329 e0833b130f065b4d3c486f87de60221d 525 Gene3D G3DSA:2.80.10.50 190 297 2.0E-15 T 19-04-2016 AMED_1329 e0833b130f065b4d3c486f87de60221d 525 SUPERFAMILY SSF50370 187 296 3.54E-18 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1329 e0833b130f065b4d3c486f87de60221d 525 SUPERFAMILY SSF49785 393 524 1.13E-29 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0421 fcc2b98b73037eab48477a10dc6da653 153 SUPERFAMILY SSF160904 3 149 3.92E-32 T 19-04-2016 AMED_0421 fcc2b98b73037eab48477a10dc6da653 153 Gene3D G3DSA:1.10.3300.10 5 151 1.3E-29 T 19-04-2016 IPR023286 ABATE domain AMED_0421 fcc2b98b73037eab48477a10dc6da653 153 Pfam PF07336 Putative stress-induced transcription regulator 7 92 1.4E-8 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_0421 fcc2b98b73037eab48477a10dc6da653 153 PANTHER PTHR35525 4 151 4.2E-16 T 19-04-2016 AMED_0421 fcc2b98b73037eab48477a10dc6da653 153 Pfam PF11706 CGNR zinc finger 107 150 8.0E-19 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_0451 cd4fe05167d9d1442aa5c8f7bab544e3 393 Gene3D G3DSA:2.40.440.10 243 365 1.2E-20 T 19-04-2016 AMED_0451 cd4fe05167d9d1442aa5c8f7bab544e3 393 PANTHER PTHR30582 17 388 8.1E-61 T 19-04-2016 AMED_0451 cd4fe05167d9d1442aa5c8f7bab544e3 393 PANTHER PTHR30582:SF2 17 388 8.1E-61 T 19-04-2016 AMED_0451 cd4fe05167d9d1442aa5c8f7bab544e3 393 SUPERFAMILY SSF141523 242 364 8.37E-25 T 19-04-2016 AMED_0451 cd4fe05167d9d1442aa5c8f7bab544e3 393 Pfam PF03734 L,D-transpeptidase catalytic domain 244 364 1.8E-20 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_9043 96c23d50d59d69fa3b4129618fe9857b 289 Gene3D G3DSA:3.20.20.80 89 288 1.8E-63 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_9043 96c23d50d59d69fa3b4129618fe9857b 289 PANTHER PTHR34135:SF2 80 269 3.1E-57 T 19-04-2016 AMED_9043 96c23d50d59d69fa3b4129618fe9857b 289 Pfam PF01183 Glycosyl hydrolases family 25 92 270 2.4E-45 T 19-04-2016 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMED_9043 96c23d50d59d69fa3b4129618fe9857b 289 PANTHER PTHR34135 80 269 3.1E-57 T 19-04-2016 AMED_9043 96c23d50d59d69fa3b4129618fe9857b 289 SUPERFAMILY SSF51445 88 288 3.21E-58 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_9043 96c23d50d59d69fa3b4129618fe9857b 289 SMART SM00641 89 198 2.7E-43 T 19-04-2016 IPR018077 Glycoside hydrolase, family 25 subgroup AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 SUPERFAMILY SSF48208 257 751 2.12E-56 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 125 234 2.6E-15 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 55 109 9.2E-12 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 PANTHER PTHR31084 55 758 1.6E-136 T 19-04-2016 AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 PIRSF PIRSF007663 108 771 5.3E-171 T 19-04-2016 IPR016518 Alpha-L-fucosidase GO:0004560 KEGG: 00511+3.2.1.51 AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 9 36 1.5E-4 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 8 29 3.6E-7 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_4617 ba82515cb44e3186bc2075eda8b5f15f 771 Gene3D G3DSA:2.70.98.50 54 386 2.1E-79 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_5904 f9e9541c5c5580dcec0fac9978b01e98 411 SMART SM00530 13 69 1.1E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5904 f9e9541c5c5580dcec0fac9978b01e98 411 SUPERFAMILY SSF47413 8 72 7.35E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5904 f9e9541c5c5580dcec0fac9978b01e98 411 Gene3D G3DSA:1.10.260.40 10 89 2.7E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5904 f9e9541c5c5580dcec0fac9978b01e98 411 Pfam PF13560 Helix-turn-helix domain 10 66 5.4E-14 T 19-04-2016 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 33 113 8.0E-19 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 114 198 3.36E-14 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 214 296 3.98E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 118 196 2.2E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 216 290 2.2E-30 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 284 372 3.43E-24 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SUPERFAMILY SSF50249 35 137 1.12E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 298 370 2.2E-21 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 40 112 1.2E-15 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 214 284 5.4E-26 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Pfam PF00575 S1 RNA binding domain 128 195 1.3E-13 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 Gene3D G3DSA:2.40.50.140 291 373 9.9E-28 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PANTHER PTHR10724 26 374 8.1E-120 T 19-04-2016 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PANTHER PTHR10724:SF6 26 374 8.1E-120 T 19-04-2016 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 41 112 3.2E-17 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 128 195 1.6E-9 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 214 284 8.9E-28 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 SMART SM00316 299 370 1.0E-22 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 133 149 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 109 128 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 150 167 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 236 257 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 353 371 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 43 61 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 179 199 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 61 75 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_6127 f336e9321f9cf02df160cef62fde4c6e 499 PRINTS PR00681 Ribosomal protein S1 signature 314 333 1.7E-87 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 PANTHER PTHR11533 35 463 3.6E-58 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 Gene3D G3DSA:1.10.390.10 333 463 5.3E-11 T 19-04-2016 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 334 1.6E-5 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 172 187 1.6E-5 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 338 350 1.6E-5 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 Pfam PF01433 Peptidase family M1 57 286 2.4E-18 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 Pfam PF01433 Peptidase family M1 319 365 7.3E-13 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 PANTHER PTHR11533:SF185 35 463 3.6E-58 T 19-04-2016 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 SUPERFAMILY SSF63737 41 234 3.14E-29 T 19-04-2016 AMED_8722 7e6c3349dde011dd20136234bb3204e2 477 SUPERFAMILY SSF55486 245 463 6.41E-37 T 19-04-2016 AMED_3624 1cc9e6ca952357ad847926cf72b1c84c 122 Gene3D G3DSA:3.90.470.20 2 119 1.0E-21 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_3624 1cc9e6ca952357ad847926cf72b1c84c 122 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 3 101 7.8E-11 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_3624 1cc9e6ca952357ad847926cf72b1c84c 122 SUPERFAMILY SSF56214 2 119 5.23E-20 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_3624 1cc9e6ca952357ad847926cf72b1c84c 122 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 12 65 5.0E-6 T 19-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_3624 1cc9e6ca952357ad847926cf72b1c84c 122 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 119 1.9E-17 T 19-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 322 460 7.6E-32 T 19-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 Gene3D G3DSA:3.40.50.1000 317 486 1.9E-49 T 19-04-2016 IPR023214 HAD-like domain AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 322 460 8.2E-29 T 19-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 PANTHER PTHR23133:SF3 322 490 9.1E-31 T 19-04-2016 AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 Gene3D G3DSA:3.90.550.10 8 184 9.3E-23 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 414 458 1.8E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 Pfam PF13242 HAD-hyrolase-like 413 484 6.7E-13 T 19-04-2016 AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 SUPERFAMILY SSF53448 8 190 9.64E-31 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 SUPERFAMILY SSF56784 322 485 8.7E-44 T 19-04-2016 IPR023214 HAD-like domain AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 PANTHER PTHR23133 322 490 9.1E-31 T 19-04-2016 AMED_4264 d9b340cc3e45ae9186d2eeac515c27f6 492 Pfam PF00535 Glycosyl transferase family 2 8 112 6.2E-13 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 PANTHER PTHR24096:SF192 12 507 5.2E-116 T 19-04-2016 IPR030310 Long-chain-fatty-acid--CoA ligase FadD17 GO:0004467|GO:0006633 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 Gene3D G3DSA:3.30.300.30 400 496 1.4E-16 T 19-04-2016 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 Pfam PF00501 AMP-binding enzyme 17 402 7.3E-57 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 Gene3D G3DSA:3.40.50.980 16 156 4.7E-22 T 19-04-2016 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 PANTHER PTHR24096 12 507 5.2E-116 T 19-04-2016 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 SUPERFAMILY SSF56801 12 498 9.68E-98 T 19-04-2016 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 Pfam PF13193 AMP-binding enzyme C-terminal domain 413 488 1.2E-11 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 Gene3D G3DSA:3.40.50.980 157 313 5.4E-24 T 19-04-2016 AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 ProSitePatterns PS00455 Putative AMP-binding domain signature. 150 161 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3946 e0ed27cc1a6906cc3013d8fef59e3d00 529 Gene3D G3DSA:2.30.38.10 334 396 1.2E-14 T 19-04-2016 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:1.10.150.20 184 251 9.2E-24 T 19-04-2016 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Pfam PF11799 impB/mucB/samB family C-terminal domain 255 364 2.5E-17 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 PANTHER PTHR11076 21 376 2.7E-126 T 19-04-2016 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Pfam PF11798 IMS family HHH motif 186 213 2.1E-6 T 19-04-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Hamap MF_01113 DNA polymerase IV [dinB]. 17 367 35.483 T 19-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 SUPERFAMILY SSF100879 257 354 2.75E-26 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 SUPERFAMILY SSF56672 20 251 2.13E-80 T 19-04-2016 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:3.30.70.270 81 180 2.8E-27 T 19-04-2016 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Gene3D G3DSA:3.30.1490.100 258 361 1.8E-30 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6271 ad2e3e10c17204649f61a4b2effbb42e 404 Pfam PF00817 impB/mucB/samB family 23 169 4.6E-46 T 19-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1085 10dd7beef7815c647a572917364af9d6 64 PANTHER PTHR33885 6 64 1.7E-18 T 19-04-2016 AMED_1085 10dd7beef7815c647a572917364af9d6 64 Pfam PF04024 PspC domain 7 63 6.3E-18 T 19-04-2016 IPR007168 Phage shock protein, PspC, N-terminal AMED_5568 d29885fde12b6a58d80996930e926102 187 Gene3D G3DSA:3.40.50.360 5 184 6.6E-51 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5568 d29885fde12b6a58d80996930e926102 187 Pfam PF03358 NADPH-dependent FMN reductase 5 146 6.8E-36 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_5568 d29885fde12b6a58d80996930e926102 187 SUPERFAMILY SSF52218 1 148 4.35E-38 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5568 d29885fde12b6a58d80996930e926102 187 PANTHER PTHR30543 1 187 6.7E-56 T 19-04-2016 AMED_5568 d29885fde12b6a58d80996930e926102 187 PANTHER PTHR30543:SF1 1 187 6.7E-56 T 19-04-2016 AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 Gene3D G3DSA:2.120.10.30 9 101 9.8E-35 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 Gene3D G3DSA:2.120.10.30 136 275 9.8E-35 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 Gene3D G3DSA:2.120.10.30 304 498 1.6E-24 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 SUPERFAMILY SSF63829 15 115 1.63E-18 T 19-04-2016 AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 SUPERFAMILY SSF63829 301 504 3.05E-28 T 19-04-2016 AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 307 457 6.2E-7 T 19-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMED_5372 1483cdb99c494007870e15e2bbed0bd6 508 SUPERFAMILY SSF101898 124 281 3.14E-19 T 19-04-2016 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 SMART SM00939 303 510 7.6E-43 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 Gene3D G3DSA:2.60.120.260 331 513 1.7E-46 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 PANTHER PTHR11731 225 322 2.2E-28 T 19-04-2016 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 PANTHER PTHR11731 16 189 2.2E-28 T 19-04-2016 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 35 496 6.3E-88 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 PANTHER PTHR11731:SF151 225 322 2.2E-28 T 19-04-2016 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 PANTHER PTHR11731:SF151 16 189 2.2E-28 T 19-04-2016 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 Gene3D G3DSA:3.40.50.1820 230 330 7.9E-67 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 Gene3D G3DSA:3.40.50.1820 26 167 7.9E-67 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 SUPERFAMILY SSF53474 16 337 3.55E-45 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 39 288 7.4E-57 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 324 504 2.6E-25 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6479 d9b136903acacbfcbb8a069ba1d3aaf3 522 SUPERFAMILY SSF49785 329 515 4.25E-42 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 SMART SM00448 2 117 4.1E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 SMART SM00421 150 207 2.1E-21 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 SUPERFAMILY SSF52172 2 136 1.38E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 SUPERFAMILY SSF46894 142 213 2.96E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 Pfam PF00072 Response regulator receiver domain 4 117 1.0E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 Gene3D G3DSA:3.40.50.2300 2 125 5.5E-36 T 19-04-2016 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 207 1.9E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 PANTHER PTHR26402:SF151 2 213 1.0E-84 T 19-04-2016 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 PANTHER PTHR26402 2 213 1.0E-84 T 19-04-2016 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 Gene3D G3DSA:1.10.10.10 126 214 6.3E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 3.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 3.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0971 ab8079cb205eb6af2a3e6ca9d515153b 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 3.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0352 278f2942526e7c86c3a5c6081a3c44c2 100 Pfam PF12728 Helix-turn-helix domain 41 89 2.4E-6 T 19-04-2016 AMED_0352 278f2942526e7c86c3a5c6081a3c44c2 100 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 42 88 7.3E-11 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 241 8.1E-41 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 PANTHER PTHR11941 2 71 5.8E-83 T 19-04-2016 AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 PANTHER PTHR11941 91 280 5.8E-83 T 19-04-2016 AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 PANTHER PTHR11941:SF85 2 71 5.8E-83 T 19-04-2016 AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 PANTHER PTHR11941:SF85 91 280 5.8E-83 T 19-04-2016 AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 SUPERFAMILY SSF52096 2 255 6.55E-66 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3386 00f6c8e5d281049ac09a84e2a6e3dbd6 281 Gene3D G3DSA:3.90.226.10 3 266 1.1E-67 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4992 1da4b5e9d27c695250324204c54bc1f4 205 PANTHER PTHR14269 4 193 3.5E-28 T 19-04-2016 AMED_4992 1da4b5e9d27c695250324204c54bc1f4 205 PIRSF PIRSF000847 20 205 8.1E-45 T 19-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 AMED_4992 1da4b5e9d27c695250324204c54bc1f4 205 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 67 89 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_4992 1da4b5e9d27c695250324204c54bc1f4 205 Pfam PF01066 CDP-alcohol phosphatidyltransferase 24 89 4.7E-16 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_5127 5b10a5a0a529cd72e8bb6a8f954624d6 421 Pfam PF13556 PucR C-terminal helix-turn-helix domain 353 408 4.1E-15 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_5127 5b10a5a0a529cd72e8bb6a8f954624d6 421 PANTHER PTHR33744 83 419 1.9E-41 T 19-04-2016 AMED_5127 5b10a5a0a529cd72e8bb6a8f954624d6 421 PANTHER PTHR33744:SF4 83 419 1.9E-41 T 19-04-2016 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 6 234 8.7E-84 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 Gene3D G3DSA:3.30.930.10 7 91 2.1E-144 T 19-04-2016 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 Gene3D G3DSA:3.30.930.10 123 363 2.1E-144 T 19-04-2016 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 Pfam PF03129 Anticodon binding domain 368 456 8.7E-24 T 19-04-2016 IPR004154 Anticodon-binding AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 158 287 1.1E-8 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PANTHER PTHR10745 7 456 2.0E-197 T 19-04-2016 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 25 39 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 191 208 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 159 176 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 405 424 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 138 150 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 319 331 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 208 218 1.6E-54 T 19-04-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 Gene3D G3DSA:3.40.50.800 364 457 2.1E-39 T 19-04-2016 IPR004154 Anticodon-binding AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 SUPERFAMILY SSF52954 355 459 1.66E-33 T 19-04-2016 IPR004154 Anticodon-binding AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 SUPERFAMILY SSF55681 5 371 1.65E-120 T 19-04-2016 AMED_6604 88807ed7a186a12f8f26d906ab52632d 462 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 3 460 50.057 T 19-04-2016 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 AMED_8208 97cbb2c9967b3d1f9c89faa091bed3ac 377 Pfam PF14606 GDSL-like Lipase/Acylhydrolase family 169 268 1.1E-15 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8208 97cbb2c9967b3d1f9c89faa091bed3ac 377 Gene3D G3DSA:3.40.50.1110 313 374 4.4E-9 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8208 97cbb2c9967b3d1f9c89faa091bed3ac 377 Gene3D G3DSA:3.40.50.1110 169 276 4.4E-9 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8208 97cbb2c9967b3d1f9c89faa091bed3ac 377 SUPERFAMILY SSF52266 164 374 1.45E-24 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_9022 bfa6590b142c05d1b7c2dd7a1ea7f502 310 PANTHER PTHR42110 1 310 2.2E-61 T 19-04-2016 AMED_9022 bfa6590b142c05d1b7c2dd7a1ea7f502 310 Pfam PF06089 L-asparaginase II 7 284 2.7E-110 T 19-04-2016 IPR010349 L-asparaginase II AMED_9022 bfa6590b142c05d1b7c2dd7a1ea7f502 310 PANTHER PTHR42110:SF1 1 310 2.2E-61 T 19-04-2016 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 SUPERFAMILY SSF51445 8 328 7.97E-105 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PIRSF PIRSF006336 2 574 1.3E-176 T 19-04-2016 IPR026283 Beta-galactosidase 1-like GO:0004565 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 Gene3D G3DSA:2.60.120.260 441 563 1.8E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 Pfam PF01301 Glycosyl hydrolases family 35 11 324 2.1E-114 T 19-04-2016 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 14 31 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 35 53 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 231 246 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 522 538 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 267 282 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 293 309 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 90 109 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PRINTS PR00742 Glycosyl hydrolase family 35 signature 145 160 2.2E-57 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PANTHER PTHR23421:SF13 3 563 5.9E-221 T 19-04-2016 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 ProSitePatterns PS01182 Glycosyl hydrolases family 35 putative active site. 147 159 - T 19-04-2016 IPR019801 Glycoside hydrolase, family 35, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 PANTHER PTHR23421 3 563 5.9E-221 T 19-04-2016 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 SUPERFAMILY SSF49785 437 564 4.86E-25 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7483 b061848cb8ca77fc46a0fca6b6c31750 584 Gene3D G3DSA:3.20.20.80 4 329 6.1E-120 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 PANTHER PTHR11472 25 431 1.2E-158 T 19-04-2016 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 Pfam PF13307 Helicase C-terminal domain 500 659 4.4E-27 T 19-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 PANTHER PTHR11472:SF37 25 431 1.2E-158 T 19-04-2016 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 SMART SM00487 21 304 0.0015 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 SMART SM00491 517 646 1.9E-42 T 19-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 PANTHER PTHR11472 453 663 1.2E-158 T 19-04-2016 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 PANTHER PTHR11472:SF37 453 663 1.2E-158 T 19-04-2016 AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 SUPERFAMILY SSF52540 39 93 9.84E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 SUPERFAMILY SSF52540 406 420 9.84E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 SUPERFAMILY SSF52540 482 640 9.84E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 SUPERFAMILY SSF52540 194 265 9.84E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 Gene3D G3DSA:3.40.50.300 408 418 2.0E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 Gene3D G3DSA:3.40.50.300 17 109 2.0E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 Gene3D G3DSA:3.40.50.300 194 266 2.0E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7723 8ce7931cc1f8fc4a7e7b9518ce41d1f0 682 Pfam PF00270 DEAD/DEAH box helicase 38 91 9.4E-6 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_1565 5b74215551800ea51dffdeae76d062ac 118 Pfam PF06243 Phenylacetic acid degradation B 28 114 6.1E-39 T 19-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 AMED_1565 5b74215551800ea51dffdeae76d062ac 118 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 29 118 6.1E-47 T 19-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 AMED_6278 e875189d78e52c79df866a81078c3648 469 PANTHER PTHR11895:SF24 17 339 1.4E-16 T 19-04-2016 AMED_6278 e875189d78e52c79df866a81078c3648 469 Gene3D G3DSA:3.10.490.10 340 411 1.2E-4 T 19-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like AMED_6278 e875189d78e52c79df866a81078c3648 469 PANTHER PTHR11895 17 339 1.4E-16 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_6278 e875189d78e52c79df866a81078c3648 469 Pfam PF01425 Amidase 27 113 2.8E-7 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_6278 e875189d78e52c79df866a81078c3648 469 SUPERFAMILY SSF75304 21 328 1.83E-32 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_6278 e875189d78e52c79df866a81078c3648 469 Gene3D G3DSA:3.90.1300.10 24 244 4.7E-15 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_6278 e875189d78e52c79df866a81078c3648 469 Gene3D G3DSA:3.90.1300.10 246 328 2.3E-9 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00364 Disease resistance protein signature 105 119 7.0E-7 T 19-04-2016 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00364 Disease resistance protein signature 209 223 7.0E-7 T 19-04-2016 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00364 Disease resistance protein signature 38 53 7.0E-7 T 19-04-2016 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 Gene3D G3DSA:1.25.40.10 445 629 2.0E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 ProSitePatterns PS00622 LuxR-type HTH domain signature. 716 743 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 SUPERFAMILY SSF48452 489 618 1.29E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 SUPERFAMILY SSF52540 11 237 3.94E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 SMART SM00421 699 756 8.7E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 Gene3D G3DSA:1.10.10.10 683 756 7.2E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 SUPERFAMILY SSF46894 697 757 2.24E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 716 732 2.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 732 744 2.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 702 716 2.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 Pfam PF00196 Bacterial regulatory proteins, luxR family 702 755 4.8E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PANTHER PTHR26402:SF151 175 198 1.0E-11 T 19-04-2016 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PANTHER PTHR26402:SF151 681 753 1.0E-11 T 19-04-2016 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 Gene3D G3DSA:3.40.50.300 20 143 1.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PANTHER PTHR26402 175 198 1.0E-11 T 19-04-2016 AMED_3323 77f9f8def2398321b97d1e94cbe286c5 764 PANTHER PTHR26402 681 753 1.0E-11 T 19-04-2016 AMED_6683 e9264793f769601b9cf889c28e3605a6 124 SUPERFAMILY SSF54593 9 113 1.88E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6683 e9264793f769601b9cf889c28e3605a6 124 Gene3D G3DSA:3.10.180.10 10 120 1.2E-24 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6683 e9264793f769601b9cf889c28e3605a6 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 108 6.0E-9 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 SMART SM00387 257 370 1.5E-24 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 SMART SM00304 97 150 9.3E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 SUPERFAMILY SSF55874 206 368 1.44E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 SMART SM00388 151 215 6.1E-7 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 Pfam PF00672 HAMP domain 79 146 3.1E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 Gene3D G3DSA:3.30.565.10 216 369 1.8E-31 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 SUPERFAMILY SSF158472 99 148 2.48E-7 T 19-04-2016 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 Gene3D G3DSA:1.10.287.130 141 211 1.3E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 SUPERFAMILY SSF47384 134 214 5.49E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 PANTHER PTHR24423 1 18 1.1E-56 T 19-04-2016 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 PANTHER PTHR24423 91 370 1.1E-56 T 19-04-2016 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 262 368 2.5E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 Pfam PF00512 His Kinase A (phospho-acceptor) domain 152 213 2.6E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 330 348 1.0E-6 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 308 1.0E-6 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8142 2ba5e64f4be8532f1b3a48f0a04cd672 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 367 1.0E-6 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 PANTHER PTHR31302:SF6 5 108 1.4E-53 T 19-04-2016 AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 PANTHER PTHR31302 5 108 1.4E-53 T 19-04-2016 AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 PANTHER PTHR31302:SF6 130 287 1.4E-53 T 19-04-2016 AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 Gene3D G3DSA:3.60.21.10 36 237 2.2E-15 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 SUPERFAMILY SSF56300 32 286 1.33E-26 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 PANTHER PTHR31302 130 287 1.4E-53 T 19-04-2016 AMED_8855 3ceda5fe0428635f664346b1c20c8e6b 305 Pfam PF00149 Calcineurin-like phosphoesterase 36 220 1.5E-9 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 Pfam PF00196 Bacterial regulatory proteins, luxR family 839 891 3.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 SUPERFAMILY SSF46894 834 894 4.42E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 SUPERFAMILY SSF52540 101 219 2.86E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 SUPERFAMILY SSF52540 5 64 2.86E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 Gene3D G3DSA:1.10.10.10 834 894 1.2E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 840 854 2.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 854 870 2.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 870 882 2.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 Pfam PF13191 AAA ATPase domain 3 159 8.0E-17 T 19-04-2016 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 Gene3D G3DSA:1.25.40.10 544 745 3.2E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 Gene3D G3DSA:1.25.40.10 777 810 3.2E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 PANTHER PTHR16305 773 827 2.5E-46 T 19-04-2016 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 PANTHER PTHR16305 1 442 2.5E-46 T 19-04-2016 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 Gene3D G3DSA:3.40.50.300 5 166 1.8E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 SMART SM00421 837 894 4.5E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7476 6edcac4611d4c648f47f4876a9a462cd 899 ProSitePatterns PS00622 LuxR-type HTH domain signature. 854 881 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0150 762b5bd9992021e0356a40ba815411a9 153 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 17 141 7.4E-37 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_0150 762b5bd9992021e0356a40ba815411a9 153 PANTHER PTHR35176:SF3 1 140 2.5E-34 T 19-04-2016 AMED_0150 762b5bd9992021e0356a40ba815411a9 153 PANTHER PTHR35176 1 140 2.5E-34 T 19-04-2016 AMED_0150 762b5bd9992021e0356a40ba815411a9 153 SUPERFAMILY SSF50475 11 148 6.25E-28 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0150 762b5bd9992021e0356a40ba815411a9 153 Gene3D G3DSA:2.30.110.10 13 144 1.8E-27 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0150 762b5bd9992021e0356a40ba815411a9 153 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 15 96 2.8E-14 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1335 1353 6.6E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1318 1328 6.6E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1359 1372 6.6E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1300 1314 6.6E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00448 1413 1527 3.2E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF55874 1193 1377 7.86E-46 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF58104 133 298 8.89E-9 T 19-04-2016 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 6 58 18.0 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 98 155 0.17 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 839 891 1.7E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 379 431 1.3E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 195 247 4.6E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 563 615 6.5E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 747 799 1.3E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 655 707 2.5E-8 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 471 523 1.1E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00304 287 339 2.0E-8 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1251 1373 1.5E-27 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF58104 399 713 6.54E-19 T 19-04-2016 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF55781 878 1049 7.85E-29 T 19-04-2016 IPR029016 GAF domain-like AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF13185 GAF domain 914 1049 4.5E-16 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:3.30.565.10 1190 1375 1.0E-43 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1137 1204 3.0E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF47384 1121 1205 7.06E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 PANTHER PTHR24423 1115 1529 6.6E-129 T 19-04-2016 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 PANTHER PTHR24423 12 39 6.6E-129 T 19-04-2016 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF158472 292 335 6.93E-5 T 19-04-2016 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00072 Response regulator receiver domain 1415 1527 3.4E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00065 915 1065 3.1E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF52172 1411 1532 2.13E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:3.30.450.40 891 1049 2.3E-20 T 19-04-2016 IPR029016 GAF domain-like AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:3.40.50.2300 1406 1533 1.2E-34 T 19-04-2016 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Gene3D G3DSA:1.10.287.130 1130 1189 1.8E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00387 1251 1375 4.5E-39 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SMART SM00388 1136 1204 2.6E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00672 HAMP domain 285 335 1.8E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00672 HAMP domain 468 519 6.7E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00672 HAMP domain 653 704 9.0E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 Pfam PF00672 HAMP domain 744 795 1.4E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6787 cb3a10fb551340e76c1e14c3f8de6369 1546 SUPERFAMILY SSF58104 767 890 3.4E-11 T 19-04-2016 AMED_8543 53b48c6289f57efe4cab6db57c02f7aa 225 PANTHER PTHR12598:SF0 1 210 1.2E-54 T 19-04-2016 AMED_8543 53b48c6289f57efe4cab6db57c02f7aa 225 Pfam PF03932 CutC family 8 199 1.3E-39 T 19-04-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 AMED_8543 53b48c6289f57efe4cab6db57c02f7aa 225 PANTHER PTHR12598 1 210 1.2E-54 T 19-04-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 AMED_8543 53b48c6289f57efe4cab6db57c02f7aa 225 Gene3D G3DSA:3.20.20.380 7 220 4.3E-58 T 19-04-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 AMED_8543 53b48c6289f57efe4cab6db57c02f7aa 225 SUPERFAMILY SSF110395 7 224 2.88E-51 T 19-04-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 Gene3D G3DSA:2.120.10.30 31 105 8.1E-22 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 Gene3D G3DSA:2.120.10.30 141 323 8.1E-22 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 Pfam PF00326 Prolyl oligopeptidase family 407 614 4.6E-42 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 PANTHER PTHR11731 280 614 3.1E-68 T 19-04-2016 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 SUPERFAMILY SSF53474 371 609 1.2E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 Gene3D G3DSA:3.40.50.1820 370 591 4.6E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 PANTHER PTHR11731:SF75 280 614 3.1E-68 T 19-04-2016 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 PANTHER PTHR11731 35 77 3.1E-68 T 19-04-2016 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 SUPERFAMILY SSF69304 155 323 1.23E-17 T 19-04-2016 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 SUPERFAMILY SSF69304 43 105 1.23E-17 T 19-04-2016 AMED_8857 7827b7cd0440c901cf26c7e2a65b1271 616 PANTHER PTHR11731:SF75 35 77 3.1E-68 T 19-04-2016 AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 PANTHER PTHR35801 90 309 1.7E-29 T 19-04-2016 AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 SMART SM00331 163 347 9.1E-4 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 PANTHER PTHR35801:SF1 90 309 1.7E-29 T 19-04-2016 AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 SUPERFAMILY SSF55874 25 154 5.21E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 Gene3D G3DSA:3.30.565.10 34 152 9.5E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 194 309 3.0E-7 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3050 c9d9ba12384943f832a1b806b0b8c71c 351 SUPERFAMILY SSF81606 168 310 7.19E-11 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 SUPERFAMILY SSF51735 3 145 1.42E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 Gene3D G3DSA:3.40.50.720 3 144 4.3E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 PANTHER PTHR24322 5 125 9.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 Pfam PF00106 short chain dehydrogenase 3 144 2.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 1.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 145 1.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2271 e05f3dbf9224765f1b2b84d2544562ef 145 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 1.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9213 238d581c00748cbd058312c50fedaeb4 334 PANTHER PTHR12286:SF4 1 178 2.9E-19 T 19-04-2016 AMED_9213 238d581c00748cbd058312c50fedaeb4 334 PANTHER PTHR12286 1 178 2.9E-19 T 19-04-2016 AMED_9213 238d581c00748cbd058312c50fedaeb4 334 SUPERFAMILY SSF51735 3 116 4.53E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9213 238d581c00748cbd058312c50fedaeb4 334 Gene3D G3DSA:3.40.50.720 2 122 2.6E-11 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6336 81763158930a754871e8affc3fb67da5 158 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 19-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AMED_6336 81763158930a754871e8affc3fb67da5 158 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 100 1.0E-26 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMED_6336 81763158930a754871e8affc3fb67da5 158 PANTHER PTHR33515 1 155 2.1E-40 T 19-04-2016 AMED_6336 81763158930a754871e8affc3fb67da5 158 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 2 120 17.781 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMED_6336 81763158930a754871e8affc3fb67da5 158 Pfam PF02033 Ribosome-binding factor A 6 113 2.0E-24 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMED_6336 81763158930a754871e8affc3fb67da5 158 SUPERFAMILY SSF89919 1 116 1.1E-25 T 19-04-2016 IPR023799 Ribosome-binding factor A domain AMED_6336 81763158930a754871e8affc3fb67da5 158 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 115 5.7E-20 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMED_6336 81763158930a754871e8affc3fb67da5 158 Gene3D G3DSA:3.30.300.20 3 121 5.8E-33 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_1264 58621b3308e7911952a1f9df6128ead2 260 PANTHER PTHR30136 7 257 9.5E-53 T 19-04-2016 AMED_1264 58621b3308e7911952a1f9df6128ead2 260 Gene3D G3DSA:1.10.10.10 6 79 9.6E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1264 58621b3308e7911952a1f9df6128ead2 260 Pfam PF09339 IclR helix-turn-helix domain 9 57 2.7E-14 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1264 58621b3308e7911952a1f9df6128ead2 260 SMART SM00346 7 97 6.1E-22 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1264 58621b3308e7911952a1f9df6128ead2 260 SUPERFAMILY SSF46785 7 80 2.14E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1264 58621b3308e7911952a1f9df6128ead2 260 Gene3D G3DSA:3.30.450.40 80 259 2.0E-43 T 19-04-2016 IPR029016 GAF domain-like AMED_1264 58621b3308e7911952a1f9df6128ead2 260 SUPERFAMILY SSF55781 72 258 1.83E-38 T 19-04-2016 IPR029016 GAF domain-like AMED_1264 58621b3308e7911952a1f9df6128ead2 260 Pfam PF01614 Bacterial transcriptional regulator 127 251 2.9E-16 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_1228 197f99e86921f57ba1619cc8ce9ffce0 141 Gene3D G3DSA:3.10.129.10 5 128 7.3E-24 T 19-04-2016 IPR029069 HotDog domain AMED_1228 197f99e86921f57ba1619cc8ce9ffce0 141 PANTHER PTHR31793 6 141 2.9E-18 T 19-04-2016 AMED_1228 197f99e86921f57ba1619cc8ce9ffce0 141 SUPERFAMILY SSF54637 6 130 4.98E-25 T 19-04-2016 IPR029069 HotDog domain AMED_1228 197f99e86921f57ba1619cc8ce9ffce0 141 Pfam PF13279 Thioesterase-like superfamily 13 120 4.3E-12 T 19-04-2016 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:1.10.10.10 2 82 6.0E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:3.40.190.10 169 263 1.5E-20 T 19-04-2016 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 Pfam PF03466 LysR substrate binding domain 91 293 4.3E-27 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 SUPERFAMILY SSF53850 91 291 1.39E-37 T 19-04-2016 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.7E-15 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:3.40.190.10 268 296 6.5E-25 T 19-04-2016 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 Gene3D G3DSA:3.40.190.10 91 168 6.5E-25 T 19-04-2016 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 SUPERFAMILY SSF46785 3 80 3.37E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 PANTHER PTHR30118 3 299 1.6E-77 T 19-04-2016 AMED_4056 5af10b8c1d22617e3f82f14ffcf90815 299 PANTHER PTHR30118:SF5 3 299 1.6E-77 T 19-04-2016 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 4 74 7.2E-11 T 19-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 4 75 2.1E-22 T 19-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 SUPERFAMILY SSF82697 3 75 8.55E-21 T 19-04-2016 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 11 74 6.0E-13 T 19-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 PANTHER PTHR34696 1 74 1.4E-23 T 19-04-2016 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 76 18.395 T 19-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9051 6139c204d3831383e9dff81d0e23b816 79 Gene3D G3DSA:3.30.1280.10 3 76 3.9E-26 T 19-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_3821 c2fecd3d26e59b27f3c1a7bfa7ae8f71 441 PANTHER PTHR36932 18 386 4.9E-41 T 19-04-2016 AMED_3821 c2fecd3d26e59b27f3c1a7bfa7ae8f71 441 PANTHER PTHR36932:SF1 18 386 4.9E-41 T 19-04-2016 AMED_3821 c2fecd3d26e59b27f3c1a7bfa7ae8f71 441 SUPERFAMILY SSF56801 89 410 3.79E-20 T 19-04-2016 AMED_3821 c2fecd3d26e59b27f3c1a7bfa7ae8f71 441 Gene3D G3DSA:3.30.300.30 337 439 8.6E-6 T 19-04-2016 AMED_5459 af9ac7d95d831a4454687512b361fb09 136 Gene3D G3DSA:1.10.10.10 12 99 5.3E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5459 af9ac7d95d831a4454687512b361fb09 136 Pfam PF12840 Helix-turn-helix domain 16 77 2.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5459 af9ac7d95d831a4454687512b361fb09 136 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 2.7E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5459 af9ac7d95d831a4454687512b361fb09 136 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 2.7E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5459 af9ac7d95d831a4454687512b361fb09 136 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 2.7E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5459 af9ac7d95d831a4454687512b361fb09 136 PANTHER PTHR33154 4 110 2.2E-20 T 19-04-2016 AMED_5459 af9ac7d95d831a4454687512b361fb09 136 SUPERFAMILY SSF46785 11 93 2.69E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5459 af9ac7d95d831a4454687512b361fb09 136 PANTHER PTHR33154:SF9 4 110 2.2E-20 T 19-04-2016 AMED_5459 af9ac7d95d831a4454687512b361fb09 136 SMART SM00418 17 98 4.6E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6223 a5f51de44397f60caeed369e730c1982 273 SUPERFAMILY SSF88946 21 122 5.63E-27 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 Pfam PF04539 Sigma-70 region 3 135 193 4.7E-13 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 Gene3D G3DSA:1.10.10.10 216 270 2.4E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6223 a5f51de44397f60caeed369e730c1982 273 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 269 8.4E-34 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 SUPERFAMILY SSF88659 192 270 2.99E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 255 266 1.2E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 240 255 1.2E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 223 235 1.2E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 PRINTS PR00046 Major sigma-70 factor signature 77 90 1.2E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 PANTHER PTHR30385 7 268 1.6E-78 T 19-04-2016 AMED_6223 a5f51de44397f60caeed369e730c1982 273 Gene3D G3DSA:1.10.10.10 121 177 8.3E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6223 a5f51de44397f60caeed369e730c1982 273 PANTHER PTHR30385:SF4 7 268 1.6E-78 T 19-04-2016 AMED_6223 a5f51de44397f60caeed369e730c1982 273 Pfam PF04545 Sigma-70, region 4 219 268 1.6E-16 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 SUPERFAMILY SSF88659 126 194 6.1E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 47 270 7.8E-83 T 19-04-2016 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6223 a5f51de44397f60caeed369e730c1982 273 Gene3D G3DSA:1.10.601.10 44 119 1.1E-18 T 19-04-2016 AMED_6223 a5f51de44397f60caeed369e730c1982 273 Pfam PF04542 Sigma-70 region 2 53 122 4.4E-15 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 PRINTS PR00364 Disease resistance protein signature 116 130 6.7E-5 T 19-04-2016 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 PRINTS PR00364 Disease resistance protein signature 204 218 6.7E-5 T 19-04-2016 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 PRINTS PR00364 Disease resistance protein signature 33 48 6.7E-5 T 19-04-2016 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 SMART SM00382 30 224 2.2E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 Gene3D G3DSA:3.40.50.300 3 216 1.3E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 PANTHER PTHR24220:SF578 6 222 3.1E-94 T 19-04-2016 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 PANTHER PTHR24220 6 222 3.1E-94 T 19-04-2016 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 Pfam PF00005 ABC transporter 21 169 1.6E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 SUPERFAMILY SSF52540 4 217 3.12E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8464 031b74e84f65dd616b8df1a33392f86b 228 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 Pfam PF00072 Response regulator receiver domain 4 116 4.4E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 Gene3D G3DSA:1.10.10.10 144 201 9.3E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 SMART SM00421 138 195 2.1E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 Gene3D G3DSA:3.40.50.2300 2 143 1.7E-37 T 19-04-2016 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 PANTHER PTHR26402 2 201 5.8E-90 T 19-04-2016 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 SUPERFAMILY SSF52172 2 129 1.08E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 SUPERFAMILY SSF46894 131 201 1.97E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 SMART SM00448 2 115 1.2E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 155 182 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 PANTHER PTHR26402:SF137 2 201 5.8E-90 T 19-04-2016 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 195 1.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 9.2E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 9.2E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6600 4e5c1dc42cca6ec98b831cc23d180ce0 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 9.2E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 83 103 9.3E-38 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 2 17 9.3E-38 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 23 41 9.3E-38 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PRINTS PR00340 P-II protein signature 52 75 9.3E-38 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 Gene3D G3DSA:3.30.70.120 1 112 9.5E-48 T 19-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 19-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 19-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 SMART SM00938 4 105 2.0E-60 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PANTHER PTHR30115 1 112 2.1E-60 T 19-04-2016 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 SUPERFAMILY SSF54913 1 112 2.56E-43 T 19-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 6.5E-41 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_1942 b88ca1515aa6cf30c566fad0a3f2fdaa 112 PIRSF PIRSF039144 1 112 3.9E-53 T 19-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMED_3960 f04a48123baca87729d437fc68529e95 402 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3960 f04a48123baca87729d437fc68529e95 402 PANTHER PTHR11712 1 386 7.6E-73 T 19-04-2016 AMED_3960 f04a48123baca87729d437fc68529e95 402 SUPERFAMILY SSF48264 12 401 7.86E-78 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3960 f04a48123baca87729d437fc68529e95 402 Gene3D G3DSA:1.10.630.10 10 401 1.7E-104 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3960 f04a48123baca87729d437fc68529e95 402 Pfam PF00067 Cytochrome P450 209 374 9.5E-21 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 272 283 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 195 217 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 160 175 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 353 364 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 143 159 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 290 317 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 344 353 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 318 333 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3960 f04a48123baca87729d437fc68529e95 402 PRINTS PR00359 B-class P450 signature 99 110 1.4E-46 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 SUPERFAMILY SSF46785 6 59 9.93E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 Pfam PF08220 DeoR-like helix-turn-helix domain 8 61 1.3E-11 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 Gene3D G3DSA:3.40.50.2300 85 198 5.7E-18 T 19-04-2016 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 SUPERFAMILY SSF53822 81 338 5.3E-33 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 3.3E-6 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 3.3E-6 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 Pfam PF13377 Periplasmic binding protein-like domain 191 355 9.4E-29 T 19-04-2016 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 SMART SM00420 8 60 3.9E-8 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 Gene3D G3DSA:1.10.10.10 6 54 1.4E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 Gene3D G3DSA:3.40.50.2300 199 332 2.7E-24 T 19-04-2016 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 PANTHER PTHR30146 78 356 9.7E-53 T 19-04-2016 AMED_5370 5835e39e0e311dc67230fbdf6116cd17 360 PANTHER PTHR30146:SF29 78 356 9.7E-53 T 19-04-2016 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 SUPERFAMILY SSF51905 234 351 1.88E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 SUPERFAMILY SSF51905 9 203 1.88E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 137 6.4E-16 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 168 192 6.4E-16 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 6.4E-16 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PANTHER PTHR23023:SF4 6 291 1.3E-63 T 19-04-2016 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 11 205 4.5E-23 T 19-04-2016 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 Gene3D G3DSA:3.50.50.60 142 209 4.8E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 Gene3D G3DSA:3.50.50.60 255 287 4.8E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 281 297 5.4E-10 T 19-04-2016 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 5.4E-10 T 19-04-2016 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 5.4E-10 T 19-04-2016 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 Gene3D G3DSA:3.50.50.60 5 141 4.7E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 Gene3D G3DSA:3.50.50.60 289 351 4.7E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1875 2fdb27d996373ed6ed763dcb1a19bcbe 355 PANTHER PTHR23023 6 291 1.3E-63 T 19-04-2016 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 PANTHER PTHR30173 1 175 1.9E-20 T 19-04-2016 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 176 8.8E-14 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 Pfam PF13490 Putative zinc-finger 190 224 3.1E-9 T 19-04-2016 IPR027383 Putative zinc-finger AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 Pfam PF04542 Sigma-70 region 2 27 95 8.0E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 SUPERFAMILY SSF88659 95 177 1.03E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 Gene3D G3DSA:1.10.1740.10 3 104 5.3E-13 T 19-04-2016 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 SUPERFAMILY SSF88946 1 99 6.28E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 PANTHER PTHR30173:SF13 1 175 1.9E-20 T 19-04-2016 AMED_3390 2cbf562f83dd953cc5e761c957fbd712 246 Gene3D G3DSA:1.10.10.10 118 176 4.1E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0167 0ca897f14ea3ee756526e3852803168e 208 PANTHER PTHR26402 3 202 5.9E-71 T 19-04-2016 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 PANTHER PTHR26402:SF151 3 202 5.9E-71 T 19-04-2016 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 SUPERFAMILY SSF46894 138 206 2.62E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.3E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 SMART SM00448 3 116 4.0E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 Gene3D G3DSA:1.10.10.10 150 206 2.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0167 0ca897f14ea3ee756526e3852803168e 208 Pfam PF00072 Response regulator receiver domain 5 116 4.1E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.6E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.6E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.6E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 SUPERFAMILY SSF52172 1 131 1.85E-30 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0167 0ca897f14ea3ee756526e3852803168e 208 SMART SM00421 146 203 4.3E-26 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0167 0ca897f14ea3ee756526e3852803168e 208 Gene3D G3DSA:3.40.50.2300 2 149 4.7E-37 T 19-04-2016 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 PANTHER PTHR30560 1 436 5.1E-103 T 19-04-2016 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 TIGRFAM TIGR00115 tig: trigger factor 12 416 1.9E-119 T 19-04-2016 IPR005215 Trigger factor GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Hamap MF_00303 Trigger factor [tig]. 1 424 19.316 T 19-04-2016 IPR005215 Trigger factor GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 258 417 3.0E-33 T 19-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Pfam PF05697 Bacterial trigger factor protein (TF) 2 145 7.6E-41 T 19-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Gene3D G3DSA:3.10.50.40 156 209 2.0E-5 T 19-04-2016 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Gene3D G3DSA:1.10.3120.10 210 391 1.1E-44 T 19-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 SUPERFAMILY SSF102735 1 131 7.32E-35 T 19-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 SUPERFAMILY SSF109998 246 434 1.37E-39 T 19-04-2016 IPR027304 Trigger factor/SurA domain AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 216 2.2E-5 T 19-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 Gene3D G3DSA:3.30.70.1050 2 119 4.2E-34 T 19-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 PANTHER PTHR30560:SF3 1 436 5.1E-103 T 19-04-2016 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 PIRSF PIRSF003095 1 442 1.5E-115 T 19-04-2016 IPR005215 Trigger factor GO:0015031 AMED_6742 891694a83bc1b4882efe3b1d8735bb9e 463 SUPERFAMILY SSF54534 134 244 1.49E-21 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 22 540 1.8E-121 T 19-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMED_5297 d09b985f522f88498595290c8182ff97 583 PANTHER PTHR30081:SF4 1 101 1.1E-173 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 PANTHER PTHR30081:SF4 266 570 1.1E-173 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 Pfam PF07549 SecD/SecF GG Motif 21 39 3.9E-4 T 19-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMED_5297 d09b985f522f88498595290c8182ff97 583 Pfam PF02355 Protein export membrane protein 370 544 2.9E-8 T 19-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMED_5297 d09b985f522f88498595290c8182ff97 583 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 299 531 1.4E-64 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMED_5297 d09b985f522f88498595290c8182ff97 583 Gene3D G3DSA:1.20.1640.10 344 543 7.0E-19 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 SUPERFAMILY SSF82866 346 543 1.57E-26 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 SUPERFAMILY SSF82866 292 303 1.57E-26 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 PANTHER PTHR30081 1 101 1.1E-173 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 PANTHER PTHR30081 266 570 1.1E-173 T 19-04-2016 AMED_5297 d09b985f522f88498595290c8182ff97 583 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 556 37.783 T 19-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMED_5693 0f214d8fa8fbeb07f01028122b33ae96 109 Pfam PF05368 NmrA-like family 9 106 2.0E-25 T 19-04-2016 IPR008030 NmrA-like domain AMED_5693 0f214d8fa8fbeb07f01028122b33ae96 109 SUPERFAMILY SSF51735 6 107 1.25E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5693 0f214d8fa8fbeb07f01028122b33ae96 109 PANTHER PTHR14194:SF46 8 107 6.9E-25 T 19-04-2016 AMED_5693 0f214d8fa8fbeb07f01028122b33ae96 109 Gene3D G3DSA:3.40.50.720 4 107 1.1E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5693 0f214d8fa8fbeb07f01028122b33ae96 109 PANTHER PTHR14194 8 107 6.9E-25 T 19-04-2016 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 SUPERFAMILY SSF52507 1 163 1.13E-51 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 1 391 1.3E-113 T 19-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 PANTHER PTHR14359 1 397 6.1E-163 T 19-04-2016 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 Gene3D G3DSA:3.40.50.1950 1 168 1.0E-55 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 177 366 9.9E-69 T 19-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 PANTHER PTHR14359:SF20 1 397 6.1E-163 T 19-04-2016 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 Pfam PF02441 Flavoprotein 2 121 6.6E-27 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 SUPERFAMILY SSF102645 171 395 9.94E-68 T 19-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 AMED_2757 5360a9c16b4e9482eb3ae981b3cb026e 397 Gene3D G3DSA:3.40.50.10300 174 395 2.4E-80 T 19-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 SUPERFAMILY SSF46785 3 72 1.5E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 PANTHER PTHR11751 9 94 2.3E-16 T 19-04-2016 AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 SUPERFAMILY SSF48008 74 200 3.92E-17 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 SMART SM00895 78 198 0.0025 T 19-04-2016 IPR011711 GntR, C-terminal AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 Gene3D G3DSA:1.20.120.530 72 194 1.3E-17 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 68 3.2E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 Gene3D G3DSA:1.10.10.10 3 69 5.0E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 SMART SM00345 10 68 3.1E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2146 a758c24dbdec6bbee139d28819a341a1 208 Pfam PF07729 FCD domain 83 191 9.8E-15 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.90.1170.50 5 122 2.0E-33 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 165 266 3.4E-37 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 433 572 4.4E-32 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 133 3.5E-21 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3719 82bcb20415921d009c545c97d639cd2b 731 PANTHER PTHR11908 548 731 1.7E-246 T 19-04-2016 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 PANTHER PTHR11908 8 531 1.7E-246 T 19-04-2016 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 147 673 6.7E-132 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 SMART SM01008 22 135 9.0E-37 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 588 729 1.1E-53 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 346 432 1.1E-53 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 SUPERFAMILY SSF56003 127 730 2.88E-161 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 123 164 1.1E-9 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 Gene3D G3DSA:3.30.365.10 273 321 1.1E-9 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 PANTHER PTHR11908:SF71 548 731 1.7E-246 T 19-04-2016 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 PANTHER PTHR11908:SF71 8 531 1.7E-246 T 19-04-2016 AMED_3719 82bcb20415921d009c545c97d639cd2b 731 SUPERFAMILY SSF54665 5 148 1.7E-35 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_0577 08025b58b9f7aaad915d3e2affd2f9af 386 PANTHER PTHR38792 39 294 4.3E-17 T 19-04-2016 AMED_0577 08025b58b9f7aaad915d3e2affd2f9af 386 SUPERFAMILY SSF50939 43 304 7.85E-16 T 19-04-2016 IPR011040 Sialidases AMED_0577 08025b58b9f7aaad915d3e2affd2f9af 386 Gene3D G3DSA:2.120.10.10 43 317 2.3E-17 T 19-04-2016 IPR011040 Sialidases AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 102 110 1.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 47 58 1.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 141 1.6E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 SUPERFAMILY SSF51735 2 215 7.19E-66 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 197 6.0E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 112 6.0E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 141 6.0E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 160 6.0E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 1 16 6.0E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 47 58 6.0E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 Gene3D G3DSA:3.40.50.720 2 215 8.0E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1436 544828af1ece5981a8a80f857a436fb1 218 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 2 212 1.1E-50 T 19-04-2016 AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PANTHER PTHR24322 7 106 6.5E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1436 544828af1ece5981a8a80f857a436fb1 218 PANTHER PTHR24322 122 153 6.5E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1428 712651b83ddf95b6081068a1d857e599 287 PANTHER PTHR35010 3 287 1.0E-77 T 19-04-2016 AMED_1428 712651b83ddf95b6081068a1d857e599 287 PANTHER PTHR35010:SF2 3 287 1.0E-77 T 19-04-2016 AMED_1428 712651b83ddf95b6081068a1d857e599 287 SUPERFAMILY SSF47413 32 83 1.99E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1428 712651b83ddf95b6081068a1d857e599 287 Pfam PF13560 Helix-turn-helix domain 8 87 3.6E-16 T 19-04-2016 AMED_1428 712651b83ddf95b6081068a1d857e599 287 Gene3D G3DSA:1.10.260.40 8 83 3.1E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1428 712651b83ddf95b6081068a1d857e599 287 SMART SM00530 12 84 2.3E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0799 777e7b423542816c6d5072f0184cf4d2 226 SUPERFAMILY SSF51261 92 219 6.8E-50 T 19-04-2016 IPR011055 Duplicated hybrid motif AMED_0799 777e7b423542816c6d5072f0184cf4d2 226 Pfam PF01551 Peptidase family M23 120 215 4.0E-32 T 19-04-2016 IPR016047 Peptidase M23 AMED_0799 777e7b423542816c6d5072f0184cf4d2 226 Gene3D G3DSA:2.70.70.10 78 220 1.9E-47 T 19-04-2016 AMED_0799 777e7b423542816c6d5072f0184cf4d2 226 PANTHER PTHR21666 103 224 2.5E-41 T 19-04-2016 AMED_3718 b17eb72179d1987410577752f486333a 297 Pfam PF13560 Helix-turn-helix domain 33 87 8.2E-12 T 19-04-2016 AMED_3718 b17eb72179d1987410577752f486333a 297 PANTHER PTHR35010 5 297 3.7E-72 T 19-04-2016 AMED_3718 b17eb72179d1987410577752f486333a 297 SUPERFAMILY SSF47413 33 83 7.36E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3718 b17eb72179d1987410577752f486333a 297 Gene3D G3DSA:1.10.260.40 33 83 2.2E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3718 b17eb72179d1987410577752f486333a 297 PANTHER PTHR35010:SF2 5 297 3.7E-72 T 19-04-2016 AMED_4533 f33f13e42bace04c09e3702cc1ce95f8 258 Gene3D G3DSA:3.90.1200.10 68 235 1.3E-11 T 19-04-2016 AMED_4533 f33f13e42bace04c09e3702cc1ce95f8 258 Pfam PF03881 Fructosamine kinase 28 251 2.1E-37 T 19-04-2016 IPR016477 Fructosamine/Ketosamine-3-kinase AMED_4533 f33f13e42bace04c09e3702cc1ce95f8 258 PANTHER PTHR12149:SF8 13 253 2.2E-27 T 19-04-2016 AMED_4533 f33f13e42bace04c09e3702cc1ce95f8 258 SUPERFAMILY SSF56112 4 248 9.04E-36 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_4533 f33f13e42bace04c09e3702cc1ce95f8 258 PIRSF PIRSF006221 2 258 9.2E-52 T 19-04-2016 IPR016477 Fructosamine/Ketosamine-3-kinase AMED_4533 f33f13e42bace04c09e3702cc1ce95f8 258 PANTHER PTHR12149 13 253 2.2E-27 T 19-04-2016 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 Pfam PF00664 ABC transporter transmembrane region 49 303 2.8E-25 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 SUPERFAMILY SSF90123 21 339 3.79E-48 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 Gene3D G3DSA:3.40.50.300 379 536 7.3E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 Gene3D G3DSA:1.20.1560.10 23 336 1.4E-44 T 19-04-2016 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 PANTHER PTHR24221:SF161 15 536 2.1E-87 T 19-04-2016 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 SUPERFAMILY SSF52540 375 537 4.11E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 PANTHER PTHR24221 15 536 2.1E-87 T 19-04-2016 AMED_9048 89ecbfd266d3462e7efab616c2f428d0 544 Pfam PF00005 ABC transporter 379 497 1.4E-11 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 299 7.6E-107 T 19-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 286 5.1E-65 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 PANTHER PTHR10314:SF100 1 306 6.3E-163 T 19-04-2016 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 SUPERFAMILY SSF53686 3 298 6.68E-82 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 19-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 Gene3D G3DSA:3.40.50.1100 150 303 1.2E-62 T 19-04-2016 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 Gene3D G3DSA:3.40.50.1100 2 42 1.2E-62 T 19-04-2016 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 Gene3D G3DSA:3.40.50.1100 43 144 1.4E-38 T 19-04-2016 AMED_7711 482dcd9ab1296c75f76610acd3f0c06e 316 PANTHER PTHR10314 1 306 6.3E-163 T 19-04-2016 AMED_0151 298146ace67d3356889f415285811b8a 264 SUPERFAMILY SSF50475 41 259 3.92E-21 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0151 298146ace67d3356889f415285811b8a 264 Pfam PF10615 Protein of unknown function (DUF2470) 177 250 4.7E-8 T 19-04-2016 IPR019595 Domain of unknown function DUF2470 AMED_0151 298146ace67d3356889f415285811b8a 264 Gene3D G3DSA:3.20.180.10 172 254 3.8E-9 T 19-04-2016 IPR019595 Domain of unknown function DUF2470 AMED_4759 ae953be9bcede6f0f844d5e8552ad2c7 353 SUPERFAMILY SSF53383 4 346 1.17E-96 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4759 ae953be9bcede6f0f844d5e8552ad2c7 353 Gene3D G3DSA:3.90.1150.10 252 346 4.6E-24 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_4759 ae953be9bcede6f0f844d5e8552ad2c7 353 PANTHER PTHR10289 2 350 3.7E-122 T 19-04-2016 AMED_4759 ae953be9bcede6f0f844d5e8552ad2c7 353 Gene3D G3DSA:3.40.640.10 2 251 2.1E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4759 ae953be9bcede6f0f844d5e8552ad2c7 353 PIRSF PIRSF017617 1 353 2.6E-111 T 19-04-2016 IPR023603 Threonine aldolase AMED_4759 ae953be9bcede6f0f844d5e8552ad2c7 353 Pfam PF01212 Beta-eliminating lyase 6 290 1.9E-78 T 19-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 AMED_3134 ec22d25ce23280d6253c81bb56027a75 326 Gene3D G3DSA:3.20.20.140 2 321 1.5E-106 T 19-04-2016 AMED_3134 ec22d25ce23280d6253c81bb56027a75 326 Pfam PF02126 Phosphotriesterase family 10 318 2.5E-100 T 19-04-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 AMED_3134 ec22d25ce23280d6253c81bb56027a75 326 PANTHER PTHR10819 2 322 1.8E-92 T 19-04-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 AMED_3134 ec22d25ce23280d6253c81bb56027a75 326 SUPERFAMILY SSF51556 2 319 3.4E-82 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8622 51fe0f52df2ece270d4d9c8807b5e134 244 SUPERFAMILY SSF56529 9 241 3.14E-66 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_8622 51fe0f52df2ece270d4d9c8807b5e134 244 PANTHER PTHR30143 9 242 2.5E-64 T 19-04-2016 AMED_8622 51fe0f52df2ece270d4d9c8807b5e134 244 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 69 240 2.0E-8 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_8622 51fe0f52df2ece270d4d9c8807b5e134 244 Gene3D G3DSA:3.90.850.10 9 242 2.8E-72 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_7209 494d41a1863b3bb0de843c7192e7858e 492 Gene3D G3DSA:3.40.309.10 275 462 2.9E-65 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_7209 494d41a1863b3bb0de843c7192e7858e 492 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_7209 494d41a1863b3bb0de843c7192e7858e 492 Gene3D G3DSA:3.40.605.10 10 274 4.2E-81 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7209 494d41a1863b3bb0de843c7192e7858e 492 PANTHER PTHR11699 11 490 4.6E-191 T 19-04-2016 AMED_7209 494d41a1863b3bb0de843c7192e7858e 492 SUPERFAMILY SSF53720 7 490 1.57E-152 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_7209 494d41a1863b3bb0de843c7192e7858e 492 Pfam PF00171 Aldehyde dehydrogenase family 17 487 5.4E-154 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_2854 4d16275b513e11c590607295e2b1e415 557 Gene3D G3DSA:3.30.70.270 386 478 6.0E-14 T 19-04-2016 AMED_2854 4d16275b513e11c590607295e2b1e415 557 SUPERFAMILY SSF141868 7 234 6.54E-43 T 19-04-2016 IPR001633 EAL domain AMED_2854 4d16275b513e11c590607295e2b1e415 557 Pfam PF00563 EAL domain 7 223 5.0E-39 T 19-04-2016 IPR001633 EAL domain AMED_2854 4d16275b513e11c590607295e2b1e415 557 SMART SM00052 5 228 5.7E-14 T 19-04-2016 IPR001633 EAL domain AMED_2854 4d16275b513e11c590607295e2b1e415 557 SUPERFAMILY SSF55073 388 526 3.69E-14 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_2854 4d16275b513e11c590607295e2b1e415 557 PANTHER PTHR33121 11 258 3.1E-26 T 19-04-2016 AMED_2854 4d16275b513e11c590607295e2b1e415 557 PANTHER PTHR33121:SF13 11 258 3.1E-26 T 19-04-2016 AMED_2854 4d16275b513e11c590607295e2b1e415 557 SMART SM00267 372 534 4.7E-6 T 19-04-2016 IPR000160 GGDEF domain AMED_2854 4d16275b513e11c590607295e2b1e415 557 Pfam PF00990 Diguanylate cyclase, GGDEF domain 388 469 3.0E-9 T 19-04-2016 IPR000160 GGDEF domain AMED_2854 4d16275b513e11c590607295e2b1e415 557 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 495 4.6E-10 T 19-04-2016 IPR000160 GGDEF domain AMED_2854 4d16275b513e11c590607295e2b1e415 557 Gene3D G3DSA:3.20.20.450 7 234 4.3E-39 T 19-04-2016 IPR001633 EAL domain AMED_0275 625cde3b3b5a69eb2bd0603e93ea1ff5 571 PANTHER PTHR34697 211 556 1.5E-94 T 19-04-2016 AMED_0275 625cde3b3b5a69eb2bd0603e93ea1ff5 571 PANTHER PTHR34697 11 192 1.5E-94 T 19-04-2016 AMED_0275 625cde3b3b5a69eb2bd0603e93ea1ff5 571 PANTHER PTHR34697:SF2 211 556 1.5E-94 T 19-04-2016 AMED_0275 625cde3b3b5a69eb2bd0603e93ea1ff5 571 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 243 538 1.6E-93 T 19-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal AMED_0275 625cde3b3b5a69eb2bd0603e93ea1ff5 571 PANTHER PTHR34697:SF2 11 192 1.5E-94 T 19-04-2016 AMED_1286 c1cf15c2fa1fab79f235e00c223e61b3 168 Pfam PF07291 Methylamine utilisation protein MauE 5 106 3.3E-13 T 19-04-2016 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 UniPathway: UPA00895 AMED_0230 a639d70f9fddd7ed0164b6b5392b02e2 456 PANTHER PTHR13878 5 455 6.3E-118 T 19-04-2016 AMED_0230 a639d70f9fddd7ed0164b6b5392b02e2 456 Gene3D G3DSA:3.30.465.10 73 187 1.9E-30 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_0230 a639d70f9fddd7ed0164b6b5392b02e2 456 Pfam PF01565 FAD binding domain 31 156 5.0E-28 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_0230 a639d70f9fddd7ed0164b6b5392b02e2 456 SUPERFAMILY SSF56176 14 186 1.59E-39 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_0230 a639d70f9fddd7ed0164b6b5392b02e2 456 PANTHER PTHR13878:SF52 5 455 6.3E-118 T 19-04-2016 AMED_0230 a639d70f9fddd7ed0164b6b5392b02e2 456 Pfam PF04030 D-arabinono-1,4-lactone oxidase 394 453 2.9E-8 T 19-04-2016 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 AMED_6039 02274729f478f7076d6a4bca29623465 170 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 96 153 3.0E-17 T 19-04-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 Pfam PF01316 Arginine repressor, DNA binding domain 5 72 4.9E-22 T 19-04-2016 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 Gene3D G3DSA:3.30.1360.40 82 156 1.3E-27 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMED_6039 02274729f478f7076d6a4bca29623465 170 PANTHER PTHR34471 1 161 4.4E-53 T 19-04-2016 AMED_6039 02274729f478f7076d6a4bca29623465 170 TIGRFAM TIGR01529 argR_whole: arginine repressor 7 156 7.8E-45 T 19-04-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 Hamap MF_00173 Arginine repressor [argR]. 1 160 59.617 T 19-04-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 SUPERFAMILY SSF55252 88 154 4.58E-17 T 19-04-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 Gene3D G3DSA:1.10.10.10 11 70 1.1E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6039 02274729f478f7076d6a4bca29623465 170 SUPERFAMILY SSF46785 4 72 9.07E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6039 02274729f478f7076d6a4bca29623465 170 Pfam PF02863 Arginine repressor, C-terminal domain 88 153 2.5E-24 T 19-04-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 PANTHER PTHR34471:SF1 1 161 4.4E-53 T 19-04-2016 AMED_6039 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 96 109 7.3E-26 T 19-04-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 23 36 7.3E-26 T 19-04-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 126 141 7.3E-26 T 19-04-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 AMED_6039 02274729f478f7076d6a4bca29623465 170 PRINTS PR01467 Bacterial arginine repressor signature 39 54 7.3E-26 T 19-04-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 SUPERFAMILY SSF53901 236 375 8.32E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 PANTHER PTHR18919 2 378 6.6E-127 T 19-04-2016 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 Gene3D G3DSA:3.40.47.10 149 187 3.6E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 Gene3D G3DSA:3.40.47.10 253 341 3.6E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 PIRSF PIRSF000429 3 341 1.6E-19 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 SUPERFAMILY SSF53901 4 234 2.69E-25 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 Gene3D G3DSA:3.40.47.10 203 230 1.5E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 Gene3D G3DSA:3.40.47.10 11 113 1.5E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 PANTHER PTHR18919:SF108 2 378 6.6E-127 T 19-04-2016 AMED_2513 0aec35f56bdcc835191361095ca2096c 389 Pfam PF00108 Thiolase, N-terminal domain 24 211 9.1E-9 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_7412 c103b87c10e04f02a82160d9a0ef3f13 351 SUPERFAMILY SSF52266 142 350 7.33E-37 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7412 c103b87c10e04f02a82160d9a0ef3f13 351 Gene3D G3DSA:3.40.50.1110 142 351 1.9E-53 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7412 c103b87c10e04f02a82160d9a0ef3f13 351 SUPERFAMILY SSF49785 35 136 1.19E-7 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7412 c103b87c10e04f02a82160d9a0ef3f13 351 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 144 328 6.1E-13 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7412 c103b87c10e04f02a82160d9a0ef3f13 351 Gene3D G3DSA:2.60.120.360 30 137 2.0E-13 T 19-04-2016 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.5E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 Gene3D G3DSA:1.10.357.10 88 174 2.8E-7 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 PANTHER PTHR30055:SF27 1 162 3.4E-22 T 19-04-2016 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 SUPERFAMILY SSF46689 1 74 1.95E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 Gene3D G3DSA:1.10.10.60 1 46 2.2E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 SUPERFAMILY SSF48498 77 189 3.86E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 Gene3D G3DSA:1.10.10.60 47 73 3.1E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4972 c5fcc41a0c28a53126ae4520a083db39 193 PANTHER PTHR30055 1 162 3.4E-22 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF56014 626 800 3.4E-51 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:3.50.50.60 3 109 1.7E-21 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 4 794 0.0 T 19-04-2016 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 UniPathway: UPA00653 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF51905 151 309 1.81E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 672 688 - T 19-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF55124 498 634 3.93E-24 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 2.1E-16 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 2.1E-16 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 2.1E-16 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 2.1E-16 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 553 614 5.5E-10 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PIRSF PIRSF037149 1 828 0.0 T 19-04-2016 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PANTHER PTHR11493:SF52 1 257 1.7E-246 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PANTHER PTHR11493:SF52 415 828 1.7E-246 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:3.50.50.60 110 310 6.0E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00397 Sirohaem Fe-binding site signature 672 690 2.9E-6 T 19-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PRINTS PR00397 Sirohaem Fe-binding site signature 629 647 2.9E-6 T 19-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 70 288 9.5E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF04324 BFD-like [2Fe-2S] binding domain 420 468 1.3E-11 T 19-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PANTHER PTHR11493 1 257 1.7E-246 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 PANTHER PTHR11493 415 828 1.7E-246 T 19-04-2016 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 625 761 2.0E-20 T 19-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 SUPERFAMILY SSF51905 3 193 3.33E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1124 0b72d2f4ca910afbf7d55154b7de12b7 840 Gene3D G3DSA:3.30.413.10 625 762 3.6E-35 T 19-04-2016 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 PANTHER PTHR30363 2 244 7.9E-66 T 19-04-2016 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 Gene3D G3DSA:1.10.10.10 2 48 1.8E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 Gene3D G3DSA:3.40.50.1360 69 210 6.0E-10 T 19-04-2016 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 SUPERFAMILY SSF100950 68 224 2.51E-27 T 19-04-2016 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 Pfam PF00455 DeoR C terminal sensor domain 68 223 2.1E-44 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 PANTHER PTHR30363:SF1 2 244 7.9E-66 T 19-04-2016 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 30 48 1.3E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 16 30 1.3E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 SUPERFAMILY SSF46785 2 51 2.35E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 Pfam PF08220 DeoR-like helix-turn-helix domain 2 50 2.9E-14 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 SMART SM00420 2 50 2.2E-13 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_5839 07412edf6b27dcd05d28072287ca0b81 250 SMART SM01134 65 225 2.2E-66 T 19-04-2016 AMED_0198 12dd87732a49ab06bfe4867db7e74574 286 PANTHER PTHR10245:SF7 4 276 1.2E-43 T 19-04-2016 AMED_0198 12dd87732a49ab06bfe4867db7e74574 286 SUPERFAMILY SSF47413 12 67 1.24E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0198 12dd87732a49ab06bfe4867db7e74574 286 PANTHER PTHR10245 4 276 1.2E-43 T 19-04-2016 AMED_0198 12dd87732a49ab06bfe4867db7e74574 286 Pfam PF01381 Helix-turn-helix 18 67 2.6E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0198 12dd87732a49ab06bfe4867db7e74574 286 Gene3D G3DSA:1.10.260.40 7 67 9.9E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0198 12dd87732a49ab06bfe4867db7e74574 286 SMART SM00530 17 72 5.9E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8193 c3068407804c2ce95427bbf438b044dd 317 Gene3D G3DSA:1.10.3720.10 101 314 3.0E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8193 c3068407804c2ce95427bbf438b044dd 317 PANTHER PTHR30465 28 317 3.9E-106 T 19-04-2016 AMED_8193 c3068407804c2ce95427bbf438b044dd 317 SUPERFAMILY SSF161098 104 299 2.62E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8193 c3068407804c2ce95427bbf438b044dd 317 PANTHER PTHR30465:SF29 28 317 3.9E-106 T 19-04-2016 AMED_8193 c3068407804c2ce95427bbf438b044dd 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 316 2.2E-27 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8193 c3068407804c2ce95427bbf438b044dd 317 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 32 68 4.4E-9 T 19-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 615 648 92.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 657 690 48.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 573 606 0.076 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 699 732 45.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 741 774 400.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 531 564 85.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 783 816 36.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SMART SM00028 825 858 68.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SUPERFAMILY SSF48452 527 644 8.54E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SUPERFAMILY SSF48452 610 727 4.13E-21 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Pfam PF13374 Tetratricopeptide repeat 740 780 2.3E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Gene3D G3DSA:1.25.40.10 495 628 5.9E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 PRINTS PR00381 Kinesin light chain signature 611 628 3.6E-6 T 19-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 PRINTS PR00381 Kinesin light chain signature 524 543 3.6E-6 T 19-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 PRINTS PR00381 Kinesin light chain signature 546 564 3.6E-6 T 19-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 PRINTS PR00381 Kinesin light chain signature 690 711 3.6E-6 T 19-04-2016 IPR002151 Kinesin light chain GO:0003777|GO:0005871 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Pfam PF13424 Tetratricopeptide repeat 656 730 4.5E-18 T 19-04-2016 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Pfam PF13424 Tetratricopeptide repeat 492 562 2.2E-14 T 19-04-2016 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Pfam PF13424 Tetratricopeptide repeat 572 646 3.0E-17 T 19-04-2016 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Pfam PF13424 Tetratricopeptide repeat 782 855 3.9E-17 T 19-04-2016 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SUPERFAMILY SSF48452 735 856 8.63E-21 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 SUPERFAMILY SSF52540 124 314 2.45E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 Gene3D G3DSA:1.25.40.10 629 852 2.3E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5056 2ea8e9e6080869a7912a527dcf61509b 861 PANTHER PTHR19959 493 852 3.5E-105 T 19-04-2016 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 137 160 - T 19-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 Gene3D G3DSA:3.40.50.170 7 197 1.2E-63 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 8 191 27.908 T 19-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 Pfam PF00551 Formyl transferase 8 185 4.4E-46 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 PANTHER PTHR10520 8 188 1.4E-67 T 19-04-2016 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 SUPERFAMILY SSF53328 8 202 2.49E-55 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0806 5329d549a100d1bbd724e903abfcea05 205 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 8 190 3.3E-64 T 19-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 AMED_6273 7d1e91eec68916c41e6afb78fd89be4f 297 Gene3D G3DSA:3.40.50.300 2 256 5.4E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6273 7d1e91eec68916c41e6afb78fd89be4f 297 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 225 1.7E-40 T 19-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_6273 7d1e91eec68916c41e6afb78fd89be4f 297 PANTHER PTHR13696:SF52 2 266 1.2E-39 T 19-04-2016 AMED_6273 7d1e91eec68916c41e6afb78fd89be4f 297 SUPERFAMILY SSF52540 2 256 4.1E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6273 7d1e91eec68916c41e6afb78fd89be4f 297 PANTHER PTHR13696 2 266 1.2E-39 T 19-04-2016 AMED_8961 c39b8431e3aac62684abbfbf6c368236 142 PANTHER PTHR11079 2 142 2.1E-32 T 19-04-2016 AMED_8961 c39b8431e3aac62684abbfbf6c368236 142 Pfam PF14437 MafB19-like deaminase 8 139 6.1E-21 T 19-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 AMED_8961 c39b8431e3aac62684abbfbf6c368236 142 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 142 44.422 T 19-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 AMED_8961 c39b8431e3aac62684abbfbf6c368236 142 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 45 83 - T 19-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMED_8961 c39b8431e3aac62684abbfbf6c368236 142 Gene3D G3DSA:3.40.140.10 3 139 1.7E-48 T 19-04-2016 AMED_8961 c39b8431e3aac62684abbfbf6c368236 142 SUPERFAMILY SSF53927 3 142 2.13E-42 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.120.260 24 163 1.3E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF48208 268 737 1.26E-131 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF02018 Carbohydrate binding domain 25 146 3.7E-11 T 19-04-2016 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF49785 22 163 2.19E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SMART SM00637 848 948 3.8E-38 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 PANTHER PTHR22298 447 666 9.8E-28 T 19-04-2016 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:1.50.10.10 269 737 8.1E-156 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF00041 Fibronectin type III domain 755 831 4.9E-10 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 ProSitePatterns PS00698 Glycosyl hydrolases family 9 active sites signature 2. 710 728 - T 19-04-2016 IPR033126 Glycosyl hydrolases family 9, Asp/Glu active sites KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF00759 Glycosyl hydrolase family 9 269 733 5.9E-102 T 19-04-2016 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SMART SM00060 750 828 2.9E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF02927 Cellulase N-terminal ig-like domain 175 256 3.8E-21 T 19-04-2016 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.40.10 746 843 6.5E-15 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF81296 175 263 7.0E-21 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 912 925 - T 19-04-2016 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF49265 747 843 5.09E-16 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.40.290 847 948 8.1E-31 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Gene3D G3DSA:2.60.40.10 174 263 2.7E-28 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 SUPERFAMILY SSF49384 844 948 1.26E-24 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 Pfam PF00553 Cellulose binding domain 848 948 2.9E-27 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7385 062eb5a3936709fc25e3d1bf32bdadfe 949 PANTHER PTHR22298:SF39 447 666 9.8E-28 T 19-04-2016 AMED_0968 5eb09ee87100bc4ebe9eb7feec9bffde 112 Gene3D G3DSA:3.10.180.10 5 110 1.2E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0968 5eb09ee87100bc4ebe9eb7feec9bffde 112 SUPERFAMILY SSF54593 3 111 2.61E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0968 5eb09ee87100bc4ebe9eb7feec9bffde 112 PANTHER PTHR33993:SF1 3 108 3.5E-30 T 19-04-2016 AMED_0968 5eb09ee87100bc4ebe9eb7feec9bffde 112 PANTHER PTHR33993 3 108 3.5E-30 T 19-04-2016 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF52343 325 448 5.11E-30 T 19-04-2016 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:3.40.50.80 326 443 7.7E-28 T 19-04-2016 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 250 260 3.8E-12 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 310 324 3.8E-12 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 415 423 3.8E-12 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 PRINTS PR00409 Phthalate dioxygenase reductase family signature 332 351 3.8E-12 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF03475 3-alpha domain 172 212 9.4E-14 T 19-04-2016 IPR005163 3-alpha domain AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 482 550 3.5E-8 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF00175 Oxidoreductase NAD-binding domain 333 429 4.4E-9 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF50800 1 213 1.15E-58 T 19-04-2016 IPR011037 Pyruvate kinase-like, insert domain AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:3.10.20.30 444 557 1.8E-20 T 19-04-2016 IPR012675 Beta-grasp domain AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF63380 222 322 3.23E-25 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 SUPERFAMILY SSF54292 438 558 3.01E-20 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:2.40.30.10 222 324 3.0E-29 T 19-04-2016 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF00970 Oxidoreductase FAD-binding domain 236 322 3.4E-7 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Pfam PF03473 MOSC domain 52 161 1.1E-18 T 19-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 PANTHER PTHR22924 221 498 7.7E-55 T 19-04-2016 AMED_3893 8b8c63cb5153222fb35a51a9d59e0c46 558 Gene3D G3DSA:2.40.33.20 1 214 7.4E-66 T 19-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 Pfam PF00270 DEAD/DEAH box helicase 26 194 5.8E-44 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 SMART SM00490 257 338 2.9E-25 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 PANTHER PTHR24031 1 461 1.1E-160 T 19-04-2016 AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 SUPERFAMILY SSF52540 75 357 1.59E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 Gene3D G3DSA:3.40.50.300 1 213 1.1E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 Pfam PF00271 Helicase conserved C-terminal domain 237 338 7.4E-23 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 SMART SM00487 21 223 3.8E-52 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 PANTHER PTHR24031:SF334 1 461 1.1E-160 T 19-04-2016 AMED_1546 34890ac6d00256a5eee73651fb5c2f43 500 Gene3D G3DSA:3.40.50.300 214 367 1.4E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 Gene3D G3DSA:3.30.70.920 60 148 5.9E-21 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 8.3E-16 T 19-04-2016 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 Gene3D G3DSA:1.10.10.10 10 58 4.2E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 SUPERFAMILY SSF54909 69 150 6.03E-16 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 PANTHER PTHR30154 1 156 5.6E-54 T 19-04-2016 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 Pfam PF01037 Lrp/AsnC ligand binding domain 75 146 3.0E-15 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 SMART SM00344 10 116 1.8E-32 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 2.0E-13 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 2.0E-13 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 2.0E-13 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 PANTHER PTHR30154:SF28 1 156 5.6E-54 T 19-04-2016 AMED_7739 078dcd24d65d23aaa3efc9e9f28c4988 158 SUPERFAMILY SSF46785 7 66 9.6E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SUPERFAMILY SSF55874 337 464 1.92E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Gene3D G3DSA:3.30.565.10 335 465 8.9E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Gene3D G3DSA:3.30.450.20 16 117 3.4E-23 T 19-04-2016 AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 PANTHER PTHR24423 15 258 1.2E-58 T 19-04-2016 AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 PANTHER PTHR24423:SF544 15 258 1.2E-58 T 19-04-2016 AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 464 1.1E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF07730 Histidine kinase 272 336 9.0E-11 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 4 127 1.9E-18 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 128 255 7.8E-24 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00086 206 248 4.2E-4 T 19-04-2016 IPR001610 PAC motif AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00086 78 120 0.0015 T 19-04-2016 IPR001610 PAC motif AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF13426 PAS domain 16 119 1.5E-13 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Pfam PF13426 PAS domain 144 247 1.6E-13 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00091 132 199 3.8E-5 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00091 4 71 4.8E-5 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SUPERFAMILY SSF55785 17 129 1.24E-25 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SUPERFAMILY SSF55785 116 242 4.35E-29 T 19-04-2016 IPR000014 PAS domain AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 Gene3D G3DSA:3.30.450.20 118 246 6.6E-29 T 19-04-2016 AMED_5162 71ff5866b2e884c93b1d89f11bdd714e 473 SMART SM00387 373 466 2.0E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7681 609add9bd7ebf3ffd1dcfbe135f94432 218 Gene3D G3DSA:1.20.910.10 22 213 4.6E-5 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_7681 609add9bd7ebf3ffd1dcfbe135f94432 218 SUPERFAMILY SSF48613 6 212 4.17E-23 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_3639 45cb90816c0ef966f1030ea43b008191 265 PANTHER PTHR12737 1 263 2.4E-93 T 19-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_3639 45cb90816c0ef966f1030ea43b008191 265 SUPERFAMILY SSF55909 2 257 3.14E-52 T 19-04-2016 AMED_3639 45cb90816c0ef966f1030ea43b008191 265 Gene3D G3DSA:3.75.10.10 1 256 8.4E-62 T 19-04-2016 AMED_3639 45cb90816c0ef966f1030ea43b008191 265 PANTHER PTHR12737:SF20 1 263 2.4E-93 T 19-04-2016 AMED_3639 45cb90816c0ef966f1030ea43b008191 265 Pfam PF02274 Amidinotransferase 12 256 1.1E-16 T 19-04-2016 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Pfam PF00817 impB/mucB/samB family 8 156 2.1E-37 T 19-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 PANTHER PTHR11076 2 342 5.2E-102 T 19-04-2016 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 SUPERFAMILY SSF100879 242 340 7.26E-21 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:3.30.70.270 70 166 1.1E-19 T 19-04-2016 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Hamap MF_01113 DNA polymerase IV [dinB]. 2 355 31.839 T 19-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Pfam PF11799 impB/mucB/samB family C-terminal domain 238 346 1.4E-17 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 SUPERFAMILY SSF56672 3 238 1.87E-64 T 19-04-2016 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:3.30.1490.100 244 345 1.2E-23 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Pfam PF11798 IMS family HHH motif 171 195 4.9E-6 T 19-04-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_1511 0922a1845aa159549dc14503aeaf584f 435 Gene3D G3DSA:1.10.150.20 170 238 2.5E-17 T 19-04-2016 AMED_0284 beb799a5c193994150552b8a2bbaabc1 247 Pfam PF06725 3D domain 191 244 3.3E-6 T 19-04-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AMED_3011 eb08fbbca71b32f2a74fa7e4e845f0fe 196 SUPERFAMILY SSF52218 7 182 5.32E-41 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_3011 eb08fbbca71b32f2a74fa7e4e845f0fe 196 Gene3D G3DSA:3.40.50.360 7 186 1.8E-50 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_3011 eb08fbbca71b32f2a74fa7e4e845f0fe 196 PANTHER PTHR30543 3 195 3.5E-49 T 19-04-2016 AMED_3011 eb08fbbca71b32f2a74fa7e4e845f0fe 196 Pfam PF03358 NADPH-dependent FMN reductase 7 152 2.6E-40 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_3011 eb08fbbca71b32f2a74fa7e4e845f0fe 196 PANTHER PTHR30543:SF1 3 195 3.5E-49 T 19-04-2016 AMED_4551 6ef5da86aa013079968fe0657533f699 343 SUPERFAMILY SSF47413 5 63 1.06E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4551 6ef5da86aa013079968fe0657533f699 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 1.8E-6 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4551 6ef5da86aa013079968fe0657533f699 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 1.8E-6 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4551 6ef5da86aa013079968fe0657533f699 343 Pfam PF13377 Periplasmic binding protein-like domain 186 342 4.5E-39 T 19-04-2016 AMED_4551 6ef5da86aa013079968fe0657533f699 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 1.1E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4551 6ef5da86aa013079968fe0657533f699 343 PANTHER PTHR30146:SF48 5 342 2.7E-119 T 19-04-2016 AMED_4551 6ef5da86aa013079968fe0657533f699 343 PANTHER PTHR30146 5 342 2.7E-119 T 19-04-2016 AMED_4551 6ef5da86aa013079968fe0657533f699 343 Gene3D G3DSA:3.40.50.2300 58 189 2.3E-25 T 19-04-2016 AMED_4551 6ef5da86aa013079968fe0657533f699 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4551 6ef5da86aa013079968fe0657533f699 343 Gene3D G3DSA:1.10.260.40 6 57 6.2E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4551 6ef5da86aa013079968fe0657533f699 343 SMART SM00354 5 75 1.6E-22 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4551 6ef5da86aa013079968fe0657533f699 343 SUPERFAMILY SSF53822 86 342 2.02E-65 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4551 6ef5da86aa013079968fe0657533f699 343 Gene3D G3DSA:3.40.50.2300 190 323 4.6E-50 T 19-04-2016 AMED_4159 53ff9462286589a226d772c4334d98e9 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.6E-16 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4159 53ff9462286589a226d772c4334d98e9 299 Gene3D G3DSA:1.10.10.10 5 89 2.3E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4159 53ff9462286589a226d772c4334d98e9 299 Gene3D G3DSA:3.40.190.10 179 267 5.2E-20 T 19-04-2016 AMED_4159 53ff9462286589a226d772c4334d98e9 299 SUPERFAMILY SSF53850 95 295 1.0E-40 T 19-04-2016 AMED_4159 53ff9462286589a226d772c4334d98e9 299 PANTHER PTHR30126 4 297 1.5E-72 T 19-04-2016 AMED_4159 53ff9462286589a226d772c4334d98e9 299 Pfam PF03466 LysR substrate binding domain 92 294 9.0E-45 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4159 53ff9462286589a226d772c4334d98e9 299 Gene3D G3DSA:3.40.190.10 95 178 6.8E-18 T 19-04-2016 AMED_4159 53ff9462286589a226d772c4334d98e9 299 PANTHER PTHR30126:SF11 4 297 1.5E-72 T 19-04-2016 AMED_4159 53ff9462286589a226d772c4334d98e9 299 SUPERFAMILY SSF46785 5 114 3.47E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4775 208470c982c179eaeaf838c7670e8968 393 SUPERFAMILY SSF53383 5 377 9.57E-92 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4775 208470c982c179eaeaf838c7670e8968 393 Gene3D G3DSA:3.40.640.10 51 263 3.0E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4775 208470c982c179eaeaf838c7670e8968 393 PANTHER PTHR11751:SF294 5 377 1.5E-98 T 19-04-2016 AMED_4775 208470c982c179eaeaf838c7670e8968 393 PANTHER PTHR11751 5 377 1.5E-98 T 19-04-2016 AMED_4775 208470c982c179eaeaf838c7670e8968 393 Gene3D G3DSA:3.90.1150.10 264 378 2.8E-8 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_4775 208470c982c179eaeaf838c7670e8968 393 Pfam PF00155 Aminotransferase class I and II 49 376 2.1E-29 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_0816 c6b9d9e84b69bb71da24faf171872de4 249 PANTHER PTHR10108 12 230 7.3E-18 T 19-04-2016 AMED_0816 c6b9d9e84b69bb71da24faf171872de4 249 Gene3D G3DSA:3.40.50.150 192 221 8.4E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0816 c6b9d9e84b69bb71da24faf171872de4 249 Gene3D G3DSA:3.40.50.150 5 157 8.4E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0816 c6b9d9e84b69bb71da24faf171872de4 249 Pfam PF13649 Methyltransferase domain 40 132 6.9E-18 T 19-04-2016 AMED_0816 c6b9d9e84b69bb71da24faf171872de4 249 PANTHER PTHR10108:SF705 12 230 7.3E-18 T 19-04-2016 AMED_0816 c6b9d9e84b69bb71da24faf171872de4 249 SUPERFAMILY SSF53335 5 240 2.59E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7168 c623556b043194b25a8a77d0611756ef 399 PANTHER PTHR11712 47 378 4.7E-73 T 19-04-2016 AMED_7168 c623556b043194b25a8a77d0611756ef 399 Gene3D G3DSA:1.10.630.10 18 399 1.2E-102 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 Pfam PF00067 Cytochrome P450 208 365 1.2E-20 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 196 218 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 293 320 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 92 103 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 155 170 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 321 336 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 342 351 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 138 154 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00359 B-class P450 signature 351 362 3.8E-41 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 351 362 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 342 351 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 242 259 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 PRINTS PR00385 P450 superfamily signature 277 288 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7168 c623556b043194b25a8a77d0611756ef 399 SUPERFAMILY SSF48264 31 394 9.43E-87 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1054 7723ce8be7f72797869f61476c43f618 386 PANTHER PTHR30365:SF0 1 379 4.0E-129 T 19-04-2016 AMED_1054 7723ce8be7f72797869f61476c43f618 386 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 252 8.4E-88 T 19-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 AMED_1054 7723ce8be7f72797869f61476c43f618 386 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 262 371 1.2E-25 T 19-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 AMED_1054 7723ce8be7f72797869f61476c43f618 386 PANTHER PTHR30365 1 379 4.0E-129 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 Pfam PF13343 Bacterial extracellular solute-binding protein 124 312 3.2E-13 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 PANTHER PTHR30006:SF11 41 366 4.9E-120 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 Gene3D G3DSA:3.40.190.10 21 158 1.1E-22 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 Gene3D G3DSA:3.40.190.10 291 326 1.1E-22 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 SUPERFAMILY SSF53850 55 335 4.05E-44 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 PANTHER PTHR30006 41 366 4.9E-120 T 19-04-2016 AMED_5506 2e84a80d889e86f63eab95e4e69bb866 376 Gene3D G3DSA:3.40.190.10 163 290 1.2E-23 T 19-04-2016 AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 SUPERFAMILY SSF53850 29 364 2.51E-62 T 19-04-2016 AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 Pfam PF12849 PBP superfamily domain 23 335 5.6E-53 T 19-04-2016 IPR024370 PBP domain AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 PANTHER PTHR30570 1 385 1.1E-61 T 19-04-2016 AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 Gene3D G3DSA:3.40.190.10 29 183 4.7E-33 T 19-04-2016 AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 Gene3D G3DSA:3.40.190.10 207 360 6.7E-20 T 19-04-2016 AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 PANTHER PTHR30570:SF0 1 385 1.1E-61 T 19-04-2016 AMED_5662 1fbcd92448dd40a8940b389cf44a3eed 525 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 362 1.3E-62 T 19-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 PANTHER PTHR16222:SF12 663 732 2.8E-46 T 19-04-2016 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 PANTHER PTHR16222:SF12 759 1003 2.8E-46 T 19-04-2016 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 SUPERFAMILY SSF101478 788 996 1.96E-54 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 PANTHER PTHR16222 663 732 2.8E-46 T 19-04-2016 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 PANTHER PTHR16222 759 1003 2.8E-46 T 19-04-2016 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 Pfam PF15567 Immunity protein 35 4 90 1.7E-23 T 19-04-2016 IPR029082 Immunity protein 35 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 SUPERFAMILY SSF101478 661 758 1.96E-54 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 SUPERFAMILY SSF101478 372 623 5.62E-8 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_9342 0fe875b5a1c2ce876656455b7163d6e2 1018 Pfam PF03747 ADP-ribosylglycohydrolase 669 976 4.3E-63 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_7765 445ad37f093e5eac267e3f0d47d921d4 208 PIRSF PIRSF006324 1 208 3.1E-53 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7765 445ad37f093e5eac267e3f0d47d921d4 208 Pfam PF01810 LysE type translocator 14 208 1.8E-38 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7765 445ad37f093e5eac267e3f0d47d921d4 208 PANTHER PTHR30086:SF2 1 207 2.3E-54 T 19-04-2016 AMED_7765 445ad37f093e5eac267e3f0d47d921d4 208 PANTHER PTHR30086 1 207 2.3E-54 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_6413 05559f4e18d2e6570fb470cdcb020096 592 PANTHER PTHR32208 416 587 3.5E-29 T 19-04-2016 AMED_6413 05559f4e18d2e6570fb470cdcb020096 592 PANTHER PTHR32208:SF28 416 587 3.5E-29 T 19-04-2016 AMED_6413 05559f4e18d2e6570fb470cdcb020096 592 Pfam PF09362 Domain of unknown function (DUF1996) 435 570 7.6E-17 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.30.365.10 446 583 6.8E-41 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 PANTHER PTHR11908:SF76 3 752 9.3E-244 T 19-04-2016 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 SUPERFAMILY SSF54665 2 148 9.94E-39 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 125 3.9E-24 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 SMART SM01008 18 126 1.1E-37 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.90.1170.50 2 114 2.3E-36 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.30.365.10 598 748 1.8E-61 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.30.365.10 352 445 1.8E-61 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 SUPERFAMILY SSF56003 118 748 6.15E-175 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 PANTHER PTHR11908 3 752 9.3E-244 T 19-04-2016 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.30.365.10 276 349 2.4E-30 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.30.365.10 115 170 2.4E-30 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 145 683 4.3E-159 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_5246 1357d14df23a25b98a08054fcb4d9349 754 Gene3D G3DSA:3.30.365.10 171 273 7.9E-31 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 Pfam PF07690 Major Facilitator Superfamily 21 384 3.9E-43 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 Gene3D G3DSA:1.20.1250.20 241 427 9.3E-18 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 Gene3D G3DSA:1.20.1250.20 15 197 2.8E-26 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 SUPERFAMILY SSF103473 15 204 2.22E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 SUPERFAMILY SSF103473 237 427 2.22E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PANTHER PTHR23501:SF73 18 433 1.7E-110 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 2.5E-7 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 2.5E-7 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 2.5E-7 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 2.5E-7 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PRINTS PR01036 Tetracycline resistance protein TetB signature 288 312 2.5E-7 T 19-04-2016 AMED_0985 b7331dcb0a90dc52e6f510bad718a541 433 PANTHER PTHR23501 18 433 1.7E-110 T 19-04-2016 AMED_6208 5a3932997c1c56f919a23721a926df46 496 Gene3D G3DSA:3.40.605.10 22 280 1.4E-91 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_6208 5a3932997c1c56f919a23721a926df46 496 PANTHER PTHR11699 1 493 2.9E-227 T 19-04-2016 AMED_6208 5a3932997c1c56f919a23721a926df46 496 SUPERFAMILY SSF53720 14 493 3.27E-157 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_6208 5a3932997c1c56f919a23721a926df46 496 Gene3D G3DSA:3.40.309.10 281 464 7.1E-62 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_6208 5a3932997c1c56f919a23721a926df46 496 PANTHER PTHR11699:SF210 1 493 2.9E-227 T 19-04-2016 AMED_6208 5a3932997c1c56f919a23721a926df46 496 Pfam PF00171 Aldehyde dehydrogenase family 29 488 1.5E-159 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_6208 5a3932997c1c56f919a23721a926df46 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_6208 5a3932997c1c56f919a23721a926df46 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 SUPERFAMILY SSF54631 98 197 7.07E-15 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 PANTHER PTHR11911 12 280 3.3E-249 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 PANTHER PTHR11911 298 479 3.3E-249 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 PANTHER PTHR11911:SF80 12 280 3.3E-249 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 PANTHER PTHR11911:SF80 298 479 3.3E-249 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 SUPERFAMILY SSF51412 13 93 8.9E-92 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 SUPERFAMILY SSF51412 215 474 8.9E-92 T 19-04-2016 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 Gene3D G3DSA:3.20.20.70 11 475 3.1E-126 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 PIRSF PIRSF000130 4 479 2.1E-140 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 13 474 6.9E-104 T 19-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 AMED_8071 a8b23342963194e4e68d061a70d108e8 479 TIGRFAM TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein 2 477 9.6E-243 T 19-04-2016 IPR005991 IMP dehydrogenase-related 1 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_8071 a8b23342963194e4e68d061a70d108e8 479 Pfam PF00571 CBS domain 100 137 5.1E-4 T 19-04-2016 IPR000644 CBS domain AMED_8071 a8b23342963194e4e68d061a70d108e8 479 SMART SM01240 11 475 1.1E-189 T 19-04-2016 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 PANTHER PTHR11712 149 867 8.7E-161 T 19-04-2016 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 PANTHER PTHR11712 1472 1708 8.7E-161 T 19-04-2016 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 PANTHER PTHR11712 2 108 8.7E-161 T 19-04-2016 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00825 Beta-ketoacyl synthase 2 439 6.8E-41 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:1.10.1200.10 914 988 4.3E-4 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00826 1433 1592 8.1E-4 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 271 384 5.9E-30 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF53901 160 384 2.6E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF53901 3 101 2.6E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.366.10 572 660 4.4E-38 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.366.10 729 840 4.4E-38 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF52151 554 665 3.4E-43 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF52151 729 831 3.4E-43 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.47.10 276 439 1.3E-40 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 558 840 1.0E-30 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.50.720 1186 1372 5.2E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF47336 914 990 2.02E-5 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.30.70.250 666 728 1.7E-10 T 19-04-2016 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF55048 665 728 3.79E-11 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF00698 Acyl transferase domain 563 811 2.2E-30 T 19-04-2016 IPR014043 Acyl transferase AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.47.10 133 274 3.5E-53 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Gene3D G3DSA:3.40.47.10 2 100 3.5E-53 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF08659 KR domain 1188 1367 3.1E-28 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SUPERFAMILY SSF51735 1185 1431 3.47E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF14765 Polyketide synthase dehydratase 1437 1711 2.7E-43 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 263 1.7E-45 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_6864 c9621a2de25e4260fed76d17819105e7 1915 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1186 1369 3.4E-11 T 19-04-2016 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 SUPERFAMILY SSF88946 10 103 8.24E-18 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 11 163 2.4E-53 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 Pfam PF08281 Sigma-70, region 4 110 159 3.2E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 Gene3D G3DSA:1.10.1740.10 6 85 3.5E-20 T 19-04-2016 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 Pfam PF04542 Sigma-70 region 2 23 85 2.6E-12 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 SUPERFAMILY SSF88659 104 165 2.8E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 163 1.5E-21 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 Gene3D G3DSA:1.10.10.10 107 165 1.9E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3301 7a0f92f4a5fa90b8c58a1335cc61020e 172 PANTHER PTHR30173 10 167 4.6E-33 T 19-04-2016 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 12 1298 0.0 T 19-04-2016 IPR010222 RNA helicase HrpA GO:0004004 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 PANTHER PTHR18934 745 873 0.0 T 19-04-2016 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 PANTHER PTHR18934 20 708 0.0 T 19-04-2016 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Pfam PF04408 Helicase associated domain (HA2) 472 561 6.2E-17 T 19-04-2016 IPR007502 Helicase-associated domain GO:0004386 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Pfam PF00271 Helicase conserved C-terminal domain 291 407 7.1E-10 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 SMART SM00382 87 388 1.4E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Pfam PF00270 DEAD/DEAH box helicase 81 228 1.6E-7 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 PANTHER PTHR18934:SF109 745 873 0.0 T 19-04-2016 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 PANTHER PTHR18934:SF109 20 708 0.0 T 19-04-2016 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Pfam PF11898 Domain of unknown function (DUF3418) 718 1298 3.2E-234 T 19-04-2016 IPR024590 RNA helicase HrpA, C-terminal AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 SMART SM00487 70 254 8.4E-28 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 SMART SM00847 468 563 7.5E-36 T 19-04-2016 IPR007502 Helicase-associated domain GO:0004386 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Gene3D G3DSA:3.40.50.300 71 228 1.8E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 616 705 7.1E-16 T 19-04-2016 IPR011709 Domain of unknown function DUF1605 AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 Gene3D G3DSA:3.40.50.300 275 422 8.9E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 SUPERFAMILY SSF52540 69 604 4.47E-110 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6985 60e10e892cecc791b609bd76c16cf621 1302 SMART SM00490 308 408 2.3E-15 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 SMART SM01121 216 524 3.2E-54 T 19-04-2016 IPR033470 Uncharacterised protein, DhaK domain AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 Pfam PF13684 Dihydroxyacetone kinase family 217 524 4.2E-59 T 19-04-2016 IPR033470 Uncharacterised protein, DhaK domain AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 Pfam PF02734 DAK2 domain 34 193 1.2E-30 T 19-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 SMART SM01120 34 194 4.6E-41 T 19-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 SUPERFAMILY SSF101473 4 196 7.98E-32 T 19-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 PANTHER PTHR33434 1 524 3.5E-103 T 19-04-2016 AMED_1752 045bbd4df75bf0aa91726706d5ad6e61 524 PANTHER PTHR33434:SF4 1 524 3.5E-103 T 19-04-2016 AMED_7408 8cd175ea7753fa6ae5a8d6f76504d4c9 125 SUPERFAMILY SSF54593 1 114 2.61E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7408 8cd175ea7753fa6ae5a8d6f76504d4c9 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 107 2.1E-7 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_7408 8cd175ea7753fa6ae5a8d6f76504d4c9 125 PANTHER PTHR35908 1 123 6.3E-25 T 19-04-2016 AMED_7408 8cd175ea7753fa6ae5a8d6f76504d4c9 125 PANTHER PTHR35908:SF1 1 123 6.3E-25 T 19-04-2016 AMED_7408 8cd175ea7753fa6ae5a8d6f76504d4c9 125 Gene3D G3DSA:3.10.180.10 2 109 8.0E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5063 ab57f7dd46f1ee880440ce82a04d817d 285 PANTHER PTHR10963 32 281 1.2E-83 T 19-04-2016 AMED_5063 ab57f7dd46f1ee880440ce82a04d817d 285 SUPERFAMILY SSF49899 23 282 1.97E-57 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5063 ab57f7dd46f1ee880440ce82a04d817d 285 Pfam PF00722 Glycosyl hydrolases family 16 78 280 1.1E-21 T 19-04-2016 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 AMED_5063 ab57f7dd46f1ee880440ce82a04d817d 285 Gene3D G3DSA:2.60.120.200 28 281 4.2E-60 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5063 ab57f7dd46f1ee880440ce82a04d817d 285 PANTHER PTHR10963:SF41 32 281 1.2E-83 T 19-04-2016 AMED_3917 f86a4435cf6cf650af106b352519ee09 271 Pfam PF03537 Glycoside-hydrolase family GH114 46 253 2.1E-52 T 19-04-2016 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain AMED_3917 f86a4435cf6cf650af106b352519ee09 271 PANTHER PTHR35273 33 271 4.6E-51 T 19-04-2016 AMED_3917 f86a4435cf6cf650af106b352519ee09 271 SUPERFAMILY SSF51445 43 240 2.32E-17 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3917 f86a4435cf6cf650af106b352519ee09 271 PANTHER PTHR35273:SF2 33 271 4.6E-51 T 19-04-2016 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 Gene3D G3DSA:3.40.50.2300 194 326 1.2E-49 T 19-04-2016 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 SUPERFAMILY SSF47413 20 78 2.29E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 23 67 2.9E-19 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 Pfam PF13377 Periplasmic binding protein-like domain 187 344 2.0E-36 T 19-04-2016 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 SUPERFAMILY SSF53822 77 331 5.89E-59 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 ProSitePatterns PS00356 LacI-type HTH domain signature. 23 41 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 Gene3D G3DSA:1.10.260.40 22 72 1.8E-26 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 Gene3D G3DSA:3.40.50.2300 73 193 1.4E-30 T 19-04-2016 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 PANTHER PTHR30146 19 347 1.5E-113 T 19-04-2016 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 SMART SM00354 20 90 3.3E-29 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4396 8f5d01d04a93ba6f1db04f54e868c199 347 PANTHER PTHR30146:SF34 19 347 1.5E-113 T 19-04-2016 AMED_7463 a2834adb87adab3220dd7dbe13091646 178 Gene3D G3DSA:1.20.1260.10 5 157 2.4E-42 T 19-04-2016 IPR012347 Ferritin-related AMED_7463 a2834adb87adab3220dd7dbe13091646 178 Pfam PF00210 Ferritin-like domain 9 144 2.9E-31 T 19-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMED_7463 a2834adb87adab3220dd7dbe13091646 178 PANTHER PTHR11431:SF4 9 162 4.6E-24 T 19-04-2016 AMED_7463 a2834adb87adab3220dd7dbe13091646 178 PANTHER PTHR11431 9 162 4.6E-24 T 19-04-2016 IPR001519 Ferritin GO:0006826|GO:0006879|GO:0008199 AMED_7463 a2834adb87adab3220dd7dbe13091646 178 SUPERFAMILY SSF47240 6 150 1.32E-41 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_3910 15d712adf0edcd6db20dd877ae19456a 405 PANTHER PTHR21716 71 386 5.5E-42 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_3910 15d712adf0edcd6db20dd877ae19456a 405 Pfam PF01594 Domain of unknown function DUF20 73 383 2.5E-43 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_2525 d93a11d383016377571ec5cd0a662866 179 SMART SM00903 15 158 1.7E-61 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_2525 d93a11d383016377571ec5cd0a662866 179 Gene3D G3DSA:2.30.110.10 4 156 1.2E-60 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2525 d93a11d383016377571ec5cd0a662866 179 Pfam PF01613 Flavin reductase like domain 16 158 4.8E-38 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_2525 d93a11d383016377571ec5cd0a662866 179 SUPERFAMILY SSF50475 6 157 9.32E-52 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2525 d93a11d383016377571ec5cd0a662866 179 PANTHER PTHR30466 6 157 6.5E-42 T 19-04-2016 AMED_2525 d93a11d383016377571ec5cd0a662866 179 PANTHER PTHR30466:SF1 6 157 6.5E-42 T 19-04-2016 AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.5E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.5E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 4.5E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.5E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.5E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.5E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 258 1.1E-45 T 19-04-2016 AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PANTHER PTHR24322:SF25 12 138 7.6E-55 T 19-04-2016 AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PANTHER PTHR24322:SF25 154 186 7.6E-55 T 19-04-2016 AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 Gene3D G3DSA:3.40.50.720 2 259 8.5E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PANTHER PTHR24322 12 138 7.6E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 PANTHER PTHR24322 154 186 7.6E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4391 d9e56eeca1e8a554b0abfbeea4b6bc9a 264 SUPERFAMILY SSF51735 1 259 2.41E-66 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5353 7917e35169af9313c42abb2ac90026b5 613 ProSitePatterns PS00455 Putative AMP-binding domain signature. 214 225 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5353 7917e35169af9313c42abb2ac90026b5 613 Gene3D G3DSA:3.40.50.980 220 376 3.8E-32 T 19-04-2016 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 Gene3D G3DSA:2.30.38.10 394 451 1.7E-8 T 19-04-2016 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 PANTHER PTHR24096 14 595 1.3E-144 T 19-04-2016 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 SUPERFAMILY SSF56801 27 554 1.01E-114 T 19-04-2016 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 Pfam PF13193 AMP-binding enzyme C-terminal domain 467 542 2.9E-15 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5353 7917e35169af9313c42abb2ac90026b5 613 Gene3D G3DSA:3.30.300.30 454 554 3.9E-26 T 19-04-2016 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 Pfam PF00501 AMP-binding enzyme 37 457 1.6E-71 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 PANTHER PTHR24096:SF170 14 595 1.3E-144 T 19-04-2016 AMED_5353 7917e35169af9313c42abb2ac90026b5 613 Gene3D G3DSA:3.40.50.980 32 219 3.6E-26 T 19-04-2016 AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PANTHER PTHR10625 14 329 5.6E-105 T 19-04-2016 IPR000286 Histone deacetylase superfamily AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01270 Histone deacetylase superfamily signature 243 253 4.4E-18 T 19-04-2016 IPR000286 Histone deacetylase superfamily AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 4.4E-18 T 19-04-2016 IPR000286 Histone deacetylase superfamily AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01270 Histone deacetylase superfamily signature 124 147 4.4E-18 T 19-04-2016 IPR000286 Histone deacetylase superfamily AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 80 94 2.1E-8 T 19-04-2016 IPR003085 Acetoin utilization protein AcuC GO:0045149 UniPathway: UPA00040 AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 101 114 2.1E-8 T 19-04-2016 IPR003085 Acetoin utilization protein AcuC GO:0045149 UniPathway: UPA00040 AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 14 34 2.1E-8 T 19-04-2016 IPR003085 Acetoin utilization protein AcuC GO:0045149 UniPathway: UPA00040 AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 SUPERFAMILY SSF52768 2 333 1.06E-105 T 19-04-2016 AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 Pfam PF00850 Histone deacetylase domain 20 313 1.4E-75 T 19-04-2016 IPR023801 Histone deacetylase domain AMED_2418 53ce29c01c155d3e2bdc42b9dbab43c7 389 Gene3D G3DSA:3.40.800.20 3 326 3.0E-94 T 19-04-2016 IPR023801 Histone deacetylase domain AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 373 5.3E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 Gene3D G3DSA:3.30.565.10 263 376 2.1E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 PANTHER PTHR24421:SF26 50 373 1.2E-87 T 19-04-2016 AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 Pfam PF07730 Histidine kinase 177 242 3.7E-18 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 PANTHER PTHR24421 50 373 1.2E-87 T 19-04-2016 AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 SMART SM00387 284 375 2.4E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3551 6c4b4f03d5055295d312229bcf7d1013 378 SUPERFAMILY SSF55874 258 372 1.86E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4146 58e8f5b9ed816c8369670ed7e7d45d74 254 Gene3D G3DSA:1.50.10.20 135 220 5.0E-12 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_4146 58e8f5b9ed816c8369670ed7e7d45d74 254 Gene3D G3DSA:1.50.10.20 45 95 5.0E-12 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_4146 58e8f5b9ed816c8369670ed7e7d45d74 254 SUPERFAMILY SSF48239 45 251 2.67E-10 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 91 7.7E-18 T 19-04-2016 AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 SUPERFAMILY SSF54373 267 337 1.53E-22 T 19-04-2016 AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 Pfam PF03275 UDP-galactopyranose mutase 166 373 2.5E-79 T 19-04-2016 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 SUPERFAMILY SSF51971 358 388 2.18E-44 T 19-04-2016 AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 SUPERFAMILY SSF51971 18 284 2.18E-44 T 19-04-2016 AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 18 391 7.3E-105 T 19-04-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 Gene3D G3DSA:3.40.50.720 348 395 2.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 Gene3D G3DSA:3.40.50.720 18 97 2.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 Gene3D G3DSA:3.40.50.720 201 275 2.5E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0224 3d31b0d407239d630b833e204fd30bbe 407 PANTHER PTHR21197 8 407 2.5E-103 T 19-04-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 7.2E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 7.2E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 7.2E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 10 312 7.5E-105 T 19-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PANTHER PTHR10992:SF860 1 175 2.2E-103 T 19-04-2016 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PANTHER PTHR10992:SF860 211 312 2.2E-103 T 19-04-2016 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PANTHER PTHR10992 1 175 2.2E-103 T 19-04-2016 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PANTHER PTHR10992 211 312 2.2E-103 T 19-04-2016 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 Gene3D G3DSA:3.40.50.1820 9 296 1.4E-65 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 SUPERFAMILY SSF53474 2 296 6.68E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 1.7E-13 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 107 121 1.7E-13 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 1.7E-13 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 Pfam PF00561 alpha/beta hydrolase fold 35 296 1.1E-26 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1206 f071bea6e73dd29d3833e29c8021de15 314 PIRSF PIRSF006431 1 314 5.3E-119 T 19-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMED_7381 c64e480bac41556b7432c4737aa50ee0 116 Pfam PF02148 Zn-finger in ubiquitin-hydrolases and other protein 15 78 3.7E-11 T 19-04-2016 IPR001607 Zinc finger, UBP-type GO:0008270 AMED_7381 c64e480bac41556b7432c4737aa50ee0 116 Gene3D G3DSA:3.30.40.10 8 78 2.1E-18 T 19-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type AMED_7381 c64e480bac41556b7432c4737aa50ee0 116 PANTHER PTHR24007 9 115 1.6E-16 T 19-04-2016 AMED_7381 c64e480bac41556b7432c4737aa50ee0 116 SUPERFAMILY SSF57850 8 81 1.41E-21 T 19-04-2016 AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 Gene3D G3DSA:3.30.450.20 181 285 2.7E-6 T 19-04-2016 AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF12282 Signal transduction histidine kinase 4 152 1.5E-52 T 19-04-2016 IPR022066 Signal transduction histidine kinase AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 Gene3D G3DSA:3.30.565.10 358 503 5.5E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF07568 Histidine kinase 303 370 1.6E-22 T 19-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 SMART SM00387 397 504 1.7E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 SUPERFAMILY SSF55785 182 294 2.97E-5 T 19-04-2016 IPR000014 PAS domain AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 401 502 4.3E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 PANTHER PTHR24423 154 505 5.2E-97 T 19-04-2016 AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 PANTHER PTHR24423 22 133 5.2E-97 T 19-04-2016 AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 Pfam PF08448 PAS fold 180 289 4.3E-10 T 19-04-2016 IPR013656 PAS fold-4 AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 SUPERFAMILY SSF55874 360 482 1.05E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 PANTHER PTHR24423:SF472 154 505 5.2E-97 T 19-04-2016 AMED_7972 498bed8987b27cfd7005adb5bdca29f4 506 PANTHER PTHR24423:SF472 22 133 5.2E-97 T 19-04-2016 AMED_8371 a450660ceff98abe8b61dbea283ee977 330 PANTHER PTHR30465:SF26 13 300 6.6E-88 T 19-04-2016 AMED_8371 a450660ceff98abe8b61dbea283ee977 330 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 299 1.6E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8371 a450660ceff98abe8b61dbea283ee977 330 Gene3D G3DSA:1.10.3720.10 89 287 3.9E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8371 a450660ceff98abe8b61dbea283ee977 330 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 39 67 5.9E-6 T 19-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMED_8371 a450660ceff98abe8b61dbea283ee977 330 SUPERFAMILY SSF161098 100 280 9.68E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8371 a450660ceff98abe8b61dbea283ee977 330 PANTHER PTHR30465 13 300 6.6E-88 T 19-04-2016 AMED_4789 7b093ec5018e86551aa1861ddaccf746 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 283 1.2E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4789 7b093ec5018e86551aa1861ddaccf746 290 PANTHER PTHR32243 2 290 2.4E-59 T 19-04-2016 AMED_4789 7b093ec5018e86551aa1861ddaccf746 290 Gene3D G3DSA:1.10.3720.10 4 277 5.2E-46 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4789 7b093ec5018e86551aa1861ddaccf746 290 SUPERFAMILY SSF161098 4 289 1.3E-51 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4639 e58ea256b65f05fb305d888197b85077 193 SUPERFAMILY SSF52096 18 191 3.65E-62 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4639 e58ea256b65f05fb305d888197b85077 193 Gene3D G3DSA:3.90.226.10 19 190 1.7E-72 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4639 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 1.5E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_4639 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 1.5E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_4639 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 1.5E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_4639 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 1.5E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_4639 e58ea256b65f05fb305d888197b85077 193 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 1.5E-41 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_4639 e58ea256b65f05fb305d888197b85077 193 Pfam PF00574 Clp protease 17 191 3.2E-74 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMED_4639 e58ea256b65f05fb305d888197b85077 193 PANTHER PTHR10381 20 190 1.5E-94 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMED_4639 e58ea256b65f05fb305d888197b85077 193 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 5 193 38.455 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 3.9E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 3.9E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 1.3E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 PANTHER PTHR30055 7 171 5.8E-43 T 19-04-2016 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 Gene3D G3DSA:1.10.357.10 12 192 2.2E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 PANTHER PTHR30055:SF19 7 171 5.8E-43 T 19-04-2016 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 SUPERFAMILY SSF46689 12 94 5.49E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3983 131fb9d1fb72c08102fad21d66ab9f62 193 SUPERFAMILY SSF48498 90 192 7.42E-10 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5373 994ce56a1b7412e507901e8d162345a5 488 PANTHER PTHR23501 5 469 1.8E-149 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 SUPERFAMILY SSF103473 248 468 8.5E-64 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5373 994ce56a1b7412e507901e8d162345a5 488 SUPERFAMILY SSF103473 4 194 8.5E-64 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5373 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 13 37 2.9E-9 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 2.9E-9 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 104 124 2.9E-9 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 2.9E-9 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 PANTHER PTHR23501:SF73 5 469 1.8E-149 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 Pfam PF07690 Major Facilitator Superfamily 14 410 4.3E-42 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 Gene3D G3DSA:1.20.1250.20 263 469 4.6E-21 T 19-04-2016 AMED_5373 994ce56a1b7412e507901e8d162345a5 488 Gene3D G3DSA:1.20.1250.20 14 190 6.1E-34 T 19-04-2016 AMED_8630 28ffba62b9612540b6c2d712db388104 77 PANTHER PTHR40137:SF2 6 68 1.1E-12 T 19-04-2016 AMED_8630 28ffba62b9612540b6c2d712db388104 77 PANTHER PTHR40137 6 68 1.1E-12 T 19-04-2016 AMED_8630 28ffba62b9612540b6c2d712db388104 77 Pfam PF05121 Gas vesicle protein K 7 66 1.7E-17 T 19-04-2016 IPR007805 Gas vesicle protein GvpK GO:0031412 AMED_8465 8e5dde78bfdb57bf5475d33a63c16786 361 Gene3D G3DSA:1.10.101.10 128 180 2.7E-8 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_8465 8e5dde78bfdb57bf5475d33a63c16786 361 SUPERFAMILY SSF47090 128 180 1.4E-9 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_8465 8e5dde78bfdb57bf5475d33a63c16786 361 Pfam PF01471 Putative peptidoglycan binding domain 130 179 1.7E-10 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_6140 ce3cf41337257028a7816b8817fbd887 323 PANTHER PTHR30346 1 311 9.7E-57 T 19-04-2016 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 Gene3D G3DSA:1.10.10.10 3 86 2.8E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6140 ce3cf41337257028a7816b8817fbd887 323 Pfam PF03466 LysR substrate binding domain 105 289 6.0E-11 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6140 ce3cf41337257028a7816b8817fbd887 323 Gene3D G3DSA:3.40.190.10 105 175 2.2E-9 T 19-04-2016 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 Gene3D G3DSA:3.40.190.10 268 291 2.2E-9 T 19-04-2016 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 7.1E-18 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 SUPERFAMILY SSF46785 4 86 6.66E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6140 ce3cf41337257028a7816b8817fbd887 323 PANTHER PTHR30346:SF7 1 311 9.7E-57 T 19-04-2016 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.4E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.4E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.4E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6140 ce3cf41337257028a7816b8817fbd887 323 SUPERFAMILY SSF53850 105 285 1.34E-14 T 19-04-2016 AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 Gene3D G3DSA:3.40.50.970 347 554 1.0E-52 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 Gene3D G3DSA:3.40.50.1220 193 346 1.0E-38 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 173 8.6E-46 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 SUPERFAMILY SSF52467 190 358 1.29E-41 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 544 5.8E-28 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 329 5.4E-26 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 PANTHER PTHR18968:SF124 4 592 1.6E-214 T 19-04-2016 AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 426 445 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 Gene3D G3DSA:3.40.50.970 2 183 1.3E-57 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 SUPERFAMILY SSF52518 366 565 1.45E-52 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 SUPERFAMILY SSF52518 3 185 1.4E-47 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6568 96fb44914ef8995d4fd791f5d57746fe 597 PANTHER PTHR18968 4 592 1.6E-214 T 19-04-2016 AMED_7268 6734da8226e938c90654d4ce534f7f42 317 PANTHER PTHR10996 85 310 9.0E-73 T 19-04-2016 AMED_7268 6734da8226e938c90654d4ce534f7f42 317 SUPERFAMILY SSF51735 99 277 2.4E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7268 6734da8226e938c90654d4ce534f7f42 317 Gene3D G3DSA:3.40.50.720 97 278 4.4E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7268 6734da8226e938c90654d4ce534f7f42 317 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 216 232 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_7268 6734da8226e938c90654d4ce534f7f42 317 SUPERFAMILY SSF52283 12 119 2.3E-6 T 19-04-2016 AMED_7268 6734da8226e938c90654d4ce534f7f42 317 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 277 1.5E-50 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:1.10.1030.10 399 536 2.3E-42 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF52335 964 1097 1.44E-37 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SMART SM01096 422 545 2.5E-59 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.30.470.20 753 955 7.7E-63 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.30.470.20 200 398 1.0E-73 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 425 545 3.9E-37 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PANTHER PTHR11405 1 1098 0.0 T 19-04-2016 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02142 MGS-like domain 978 1068 2.3E-22 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 680 881 3.9E-32 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.2E-67 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PANTHER PTHR11405:SF5 1 1098 0.0 T 19-04-2016 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.30.1490.20 142 199 1.7E-20 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.30.1490.20 693 752 2.0E-26 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF56059 128 400 3.54E-102 T 19-04-2016 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.40.50.20 3 108 7.1E-42 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1077 0.0 T 19-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1089 12.937 T 19-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SMART SM00851 977 1068 1.5E-34 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF56059 680 954 8.13E-93 T 19-04-2016 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.40.50.20 537 668 2.0E-54 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 Gene3D G3DSA:3.40.50.1380 959 1099 4.0E-45 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 379 397 1.4E-59 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF52440 560 681 3.31E-44 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF48108 396 551 1.96E-41 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 716 730 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2752 58dc58161e4247dfc7b31b32a06e412e 1104 SUPERFAMILY SSF52440 1 127 2.16E-46 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_6939 a84791fa16bd343a239e4f64813a4ac1 270 PANTHER PTHR12110 1 266 6.0E-73 T 19-04-2016 AMED_6939 a84791fa16bd343a239e4f64813a4ac1 270 Gene3D G3DSA:3.20.20.150 9 269 7.1E-59 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_6939 a84791fa16bd343a239e4f64813a4ac1 270 Pfam PF01261 Xylose isomerase-like TIM barrel 33 220 5.2E-30 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_6939 a84791fa16bd343a239e4f64813a4ac1 270 PANTHER PTHR12110:SF27 1 266 6.0E-73 T 19-04-2016 AMED_6939 a84791fa16bd343a239e4f64813a4ac1 270 SUPERFAMILY SSF51658 3 262 2.49E-54 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 Gene3D G3DSA:3.40.50.300 291 535 6.9E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 Gene3D G3DSA:3.40.50.300 4 256 1.4E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 SUPERFAMILY SSF52540 5 256 4.86E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 514 546 0.0034 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 267 0.003 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF00005 ABC transporter 27 184 1.6E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 Pfam PF00005 ABC transporter 315 463 1.3E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 PANTHER PTHR24220 7 421 1.7E-130 T 19-04-2016 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 ProSitePatterns PS00211 ABC transporters family signature. 435 449 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 SMART SM00382 34 241 3.7E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 SMART SM00382 322 512 1.7E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 SUPERFAMILY SSF52540 292 534 5.0E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4658 8e9e24ac7d0155696a5f4999cc52811f 581 PANTHER PTHR24220:SF586 7 421 1.7E-130 T 19-04-2016 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 PANTHER PTHR22642 44 380 4.5E-106 T 19-04-2016 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 380 41.459 T 19-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 PANTHER PTHR22642:SF1 44 380 4.5E-106 T 19-04-2016 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 Gene3D G3DSA:2.30.40.10 3 68 2.5E-11 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 Pfam PF01979 Amidohydrolase family 56 359 6.1E-17 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 Gene3D G3DSA:3.20.20.140 69 358 4.8E-48 T 19-04-2016 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 TIGRFAM TIGR01224 hutI: imidazolonepropionase 23 378 2.2E-104 T 19-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 SUPERFAMILY SSF51556 58 339 1.46E-69 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 SUPERFAMILY SSF51338 13 72 2.36E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1269 004d5a3b4a2a24c298cdb9471edc0fbb 381 SUPERFAMILY SSF51338 320 380 7.68E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4466 8975f1e51c6c1aaadfd50356eccca6cb 124 Gene3D G3DSA:3.30.750.24 12 117 6.1E-25 T 19-04-2016 IPR002645 STAS domain AMED_4466 8975f1e51c6c1aaadfd50356eccca6cb 124 Pfam PF13466 STAS domain 24 101 1.3E-13 T 19-04-2016 IPR002645 STAS domain AMED_4466 8975f1e51c6c1aaadfd50356eccca6cb 124 PANTHER PTHR33495:SF2 12 121 1.5E-18 T 19-04-2016 AMED_4466 8975f1e51c6c1aaadfd50356eccca6cb 124 SUPERFAMILY SSF52091 11 117 6.47E-20 T 19-04-2016 IPR002645 STAS domain AMED_4466 8975f1e51c6c1aaadfd50356eccca6cb 124 PANTHER PTHR33495 12 121 1.5E-18 T 19-04-2016 AMED_4466 8975f1e51c6c1aaadfd50356eccca6cb 124 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 11 110 3.4E-18 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 Pfam PF04542 Sigma-70 region 2 21 88 1.6E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 PANTHER PTHR30173 6 175 1.0E-29 T 19-04-2016 AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 Gene3D G3DSA:1.10.1740.10 3 110 1.8E-24 T 19-04-2016 AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 173 4.1E-21 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 Gene3D G3DSA:1.10.10.10 115 175 8.9E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 SUPERFAMILY SSF88946 3 101 1.05E-22 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1362 2112a50ef94222b87296d3a86d93edeb 186 SUPERFAMILY SSF88659 105 176 1.61E-7 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 12 541 6.6E-154 T 19-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 SMART SM00760 451 520 6.1E-34 T 19-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 SMART SM00382 239 367 4.8E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PANTHER PTHR30050 7 108 1.9E-195 T 19-04-2016 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 304 318 9.6E-52 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 272 286 9.6E-52 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 501 520 9.6E-52 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 240 260 9.6E-52 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 338 365 9.6E-52 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 454 520 9.5E-28 T 19-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PANTHER PTHR30050:SF2 205 544 1.9E-195 T 19-04-2016 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:1.10.8.60 373 441 2.1E-28 T 19-04-2016 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 SUPERFAMILY SSF48295 438 543 7.32E-35 T 19-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 ProSitePatterns PS01008 DnaA protein signature. 501 520 - T 19-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 Pfam PF00308 Bacterial dnaA protein 207 424 2.7E-103 T 19-04-2016 IPR013317 Chromosomal replication initiator protein DnaA AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 SUPERFAMILY SSF52540 206 418 2.82E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:1.10.1750.10 442 543 1.2E-37 T 19-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 9 542 32.768 T 19-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PANTHER PTHR30050 205 544 1.9E-195 T 19-04-2016 AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 Gene3D G3DSA:3.40.50.300 201 371 9.0E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0001 a3b11c357a0ee215ff8a8be50d54a947 547 PANTHER PTHR30050:SF2 7 108 1.9E-195 T 19-04-2016 AMED_8666 5f691ae39f0a04f6a68dd86cf8064af5 280 Gene3D G3DSA:1.20.120.350 46 115 4.0E-7 T 19-04-2016 IPR027359 Voltage-dependent channel, four helix bundle domain AMED_8666 5f691ae39f0a04f6a68dd86cf8064af5 280 SUPERFAMILY SSF81324 21 110 5.1E-8 T 19-04-2016 AMED_0579 13310954067150ec34538da7c2215a00 163 SUPERFAMILY SSF89963 92 163 4.45E-24 T 19-04-2016 IPR007551 Protein of unknown function DUF520 AMED_0579 13310954067150ec34538da7c2215a00 163 SUPERFAMILY SSF89963 4 88 7.06E-25 T 19-04-2016 IPR007551 Protein of unknown function DUF520 AMED_0579 13310954067150ec34538da7c2215a00 163 PANTHER PTHR30476:SF0 2 163 1.2E-80 T 19-04-2016 AMED_0579 13310954067150ec34538da7c2215a00 163 Gene3D G3DSA:3.30.70.990 11 97 9.6E-27 T 19-04-2016 AMED_0579 13310954067150ec34538da7c2215a00 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 3 163 24.692 T 19-04-2016 IPR007551 Protein of unknown function DUF520 AMED_0579 13310954067150ec34538da7c2215a00 163 Pfam PF04461 Protein of unknown function (DUF520) 4 163 1.4E-59 T 19-04-2016 IPR007551 Protein of unknown function DUF520 AMED_0579 13310954067150ec34538da7c2215a00 163 Gene3D G3DSA:3.30.70.860 98 163 8.6E-30 T 19-04-2016 AMED_0579 13310954067150ec34538da7c2215a00 163 PANTHER PTHR30476 2 163 1.2E-80 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 SUPERFAMILY SSF52540 92 301 3.46E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031:SF249 925 1042 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031:SF249 1127 1196 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031:SF249 92 186 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031:SF249 210 294 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 Pfam PF00271 Helicase conserved C-terminal domain 958 1019 1.3E-8 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 Gene3D G3DSA:3.40.50.300 948 1024 4.8E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 Gene3D G3DSA:3.40.50.300 637 660 4.8E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 SMART SM00487 88 331 2.0E-26 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031 925 1042 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031 1127 1196 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031 92 186 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 PANTHER PTHR24031 210 294 1.1E-36 T 19-04-2016 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 SUPERFAMILY SSF52540 106 168 1.1E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 SUPERFAMILY SSF52540 938 1067 1.1E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 Pfam PF00270 DEAD/DEAH box helicase 95 295 7.0E-20 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 Gene3D G3DSA:3.40.50.300 93 315 3.6E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 SMART SM00490 939 1020 2.2E-9 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_8307 f4ed7b3653d41ebe01b880975c4ecc61 1567 Pfam PF09369 Domain of unknown function (DUF1998) 1450 1527 2.3E-10 T 19-04-2016 IPR018973 DEAD/DEAH-box helicase, putative AMED_5480 f769c092bad6ac021653f9bea056e263 303 Pfam PF00582 Universal stress protein family 9 145 1.6E-21 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5480 f769c092bad6ac021653f9bea056e263 303 Pfam PF00582 Universal stress protein family 159 295 3.8E-25 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5480 f769c092bad6ac021653f9bea056e263 303 Gene3D G3DSA:3.40.50.620 9 147 1.2E-27 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5480 f769c092bad6ac021653f9bea056e263 303 Gene3D G3DSA:3.40.50.620 150 297 1.7E-33 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5480 f769c092bad6ac021653f9bea056e263 303 PANTHER PTHR31964:SF42 159 298 2.8E-27 T 19-04-2016 AMED_5480 f769c092bad6ac021653f9bea056e263 303 PANTHER PTHR31964 159 298 2.8E-27 T 19-04-2016 AMED_5480 f769c092bad6ac021653f9bea056e263 303 SUPERFAMILY SSF52402 9 148 9.21E-27 T 19-04-2016 AMED_5480 f769c092bad6ac021653f9bea056e263 303 PRINTS PR01438 Universal stress protein signature 156 174 1.5E-15 T 19-04-2016 IPR006015 Universal stress protein A AMED_5480 f769c092bad6ac021653f9bea056e263 303 PRINTS PR01438 Universal stress protein signature 273 295 1.5E-15 T 19-04-2016 IPR006015 Universal stress protein A AMED_5480 f769c092bad6ac021653f9bea056e263 303 PRINTS PR01438 Universal stress protein signature 255 267 1.5E-15 T 19-04-2016 IPR006015 Universal stress protein A AMED_5480 f769c092bad6ac021653f9bea056e263 303 SUPERFAMILY SSF52402 158 297 5.36E-30 T 19-04-2016 AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 Gene3D G3DSA:3.20.20.140 32 361 2.2E-73 T 19-04-2016 AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 PANTHER PTHR11271 1 415 7.2E-130 T 19-04-2016 AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 Pfam PF01979 Amidohydrolase family 29 390 1.1E-40 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 SUPERFAMILY SSF51556 30 335 3.84E-67 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 413 4.7E-134 T 19-04-2016 IPR010252 Formiminoglutamate deiminase AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 SUPERFAMILY SSF51338 345 403 4.75E-12 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1268 33d4b5d9fcd403a9cc4e95ce25e642ed 416 PANTHER PTHR11271:SF4 1 415 7.2E-130 T 19-04-2016 IPR010252 Formiminoglutamate deiminase AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 SUPERFAMILY SSF63411 33 252 8.21E-32 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 Gene3D G3DSA:3.30.830.10 39 224 3.4E-27 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 Gene3D G3DSA:3.30.830.10 256 439 2.6E-25 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 Pfam PF00675 Insulinase (Peptidase family M16) 76 187 8.7E-10 T 19-04-2016 IPR011765 Peptidase M16, N-terminal AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 PANTHER PTHR11851 15 447 3.3E-47 T 19-04-2016 AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 Pfam PF05193 Peptidase M16 inactive domain 197 370 2.6E-14 T 19-04-2016 IPR007863 Peptidase M16, C-terminal AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 SUPERFAMILY SSF63411 262 446 2.17E-34 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMED_1151 0e4a056c7201ca9f3ed2ea4410dd536a 459 PANTHER PTHR11851:SF140 15 447 3.3E-47 T 19-04-2016 AMED_3438 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 SUPERFAMILY SSF56281 58 278 1.7E-37 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3438 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 Pfam PF00753 Metallo-beta-lactamase superfamily 60 270 2.5E-26 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3438 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 Gene3D G3DSA:3.60.15.10 2 282 2.2E-46 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3438 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 PANTHER PTHR23200 4 271 3.2E-91 T 19-04-2016 AMED_3438 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 SMART SM00849 57 270 3.7E-15 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3438 ce3e1f3d57f72920bbc93bc9f62ebd6c 297 PANTHER PTHR23200:SF43 4 271 3.2E-91 T 19-04-2016 AMED_1554 4122fe149d6d8f7c3aac9ad7b71d9807 233 PANTHER PTHR23023 2 231 2.2E-75 T 19-04-2016 AMED_1554 4122fe149d6d8f7c3aac9ad7b71d9807 233 SUPERFAMILY SSF51905 18 229 7.94E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1554 4122fe149d6d8f7c3aac9ad7b71d9807 233 Gene3D G3DSA:3.50.50.60 48 230 5.8E-25 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1554 4122fe149d6d8f7c3aac9ad7b71d9807 233 PANTHER PTHR23023:SF132 2 231 2.2E-75 T 19-04-2016 AMED_2297 abe753c3f9f52a339bf747dd711386d7 188 SUPERFAMILY SSF52980 19 170 4.93E-17 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_2297 abe753c3f9f52a339bf747dd711386d7 188 PANTHER PTHR35400:SF1 20 148 5.7E-13 T 19-04-2016 AMED_2297 abe753c3f9f52a339bf747dd711386d7 188 PANTHER PTHR35400 20 148 5.7E-13 T 19-04-2016 AMED_2297 abe753c3f9f52a339bf747dd711386d7 188 Gene3D G3DSA:3.90.1570.10 20 167 1.8E-14 T 19-04-2016 IPR012296 Nuclease, putative, TT1808 AMED_2297 abe753c3f9f52a339bf747dd711386d7 188 Pfam PF05685 Putative restriction endonuclease 23 178 1.0E-22 T 19-04-2016 IPR008538 Domain of unknown function DUF820 AMED_5489 dbdba63aa0d1f4e9aff1d3c97c592077 145 SUPERFAMILY SSF50475 6 129 2.55E-21 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5489 dbdba63aa0d1f4e9aff1d3c97c592077 145 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 129 3.1E-18 T 19-04-2016 IPR024747 Pyridoxamine 5'-phosphate oxidase-related AMED_5489 dbdba63aa0d1f4e9aff1d3c97c592077 145 Gene3D G3DSA:2.30.110.10 4 134 6.4E-32 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 Gene3D G3DSA:1.10.630.10 10 410 3.6E-106 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 Pfam PF00067 Cytochrome P450 291 379 1.4E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 SUPERFAMILY SSF48264 12 409 4.32E-78 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PANTHER PTHR24286 58 409 5.2E-97 T 19-04-2016 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PANTHER PTHR24286:SF42 58 409 5.2E-97 T 19-04-2016 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 106 117 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 304 331 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 354 363 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 287 298 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 152 168 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 169 184 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 332 347 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 208 230 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2551 3c2f1fa1ab8a7744a3448922008a0e8e 412 PRINTS PR00359 B-class P450 signature 363 374 3.6E-45 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 SUPERFAMILY SSF50324 3 156 4.32E-57 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 1 158 32.312 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 52 58 - T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 Pfam PF00719 Inorganic pyrophosphatase 5 156 4.3E-53 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 PANTHER PTHR10286:SF0 3 156 6.2E-64 T 19-04-2016 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 PANTHER PTHR10286 3 156 6.2E-64 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMED_8757 374f91c84c48f01ce92bfc8064556bc4 172 Gene3D G3DSA:3.90.80.10 2 156 1.2E-54 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMED_9054 ba33d23b9e7e5154a375b71fdaed4f81 379 Gene3D G3DSA:1.20.1250.20 3 180 3.9E-12 T 19-04-2016 AMED_9054 ba33d23b9e7e5154a375b71fdaed4f81 379 Gene3D G3DSA:1.20.1250.20 206 369 7.4E-5 T 19-04-2016 AMED_9054 ba33d23b9e7e5154a375b71fdaed4f81 379 SUPERFAMILY SSF103473 7 362 1.14E-26 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9054 ba33d23b9e7e5154a375b71fdaed4f81 379 Pfam PF07690 Major Facilitator Superfamily 23 252 1.1E-12 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 Gene3D G3DSA:3.90.1150.10 316 409 8.7E-20 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 Gene3D G3DSA:3.90.1150.10 6 74 8.7E-20 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 PANTHER PTHR11986:SF83 5 22 6.5E-229 T 19-04-2016 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 PANTHER PTHR11986:SF83 38 417 6.5E-229 T 19-04-2016 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 PANTHER PTHR11986 5 22 6.5E-229 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 PANTHER PTHR11986 38 417 6.5E-229 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 Gene3D G3DSA:3.40.640.10 75 313 1.3E-49 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 SUPERFAMILY SSF53383 4 409 2.12E-81 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0560 1113f075a6620f6ffff1a89474b26fc7 438 Pfam PF00202 Aminotransferase class-III 39 336 2.8E-42 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095 2603 3210 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095 4657 5734 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095 685 1170 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095 5750 6088 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM01294 2540 2604 1.0E-4 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 3652 3837 2.22E-41 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 3575 3643 6.9E-7 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 6115 6183 1.8E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 2536 2608 2.7E-12 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 1013 1081 0.0048 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SMART SM00823 Phosphopantetheine attachment site 5058 5127 5.2E-10 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 5051 5123 6.02E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1277 1528 6.56E-43 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 5323 5586 6.34E-64 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13745 HxxPF-repeated domain 361 449 9.9E-26 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13745 HxxPF-repeated domain 2943 3033 1.2E-29 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13745 HxxPF-repeated domain 5455 5545 5.9E-32 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 2811 3073 3.93E-64 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 4101 4278 1.22E-41 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 3824 4064 2.0E-44 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3599 3614 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 6139 6154 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1037 1052 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00012 Phosphopantetheine attachment site. 5082 5097 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:2.30.38.10 3379 3456 3.3E-24 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:2.30.38.10 5917 5994 1.1E-27 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:2.30.38.10 814 893 9.2E-27 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:2.30.38.10 4860 4937 7.1E-27 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:2.30.38.10 2339 2417 5.3E-22 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 3079 3233 1.1E-48 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 5591 5704 1.0E-46 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 2035 2171 9.2E-49 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 4551 4717 8.8E-46 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 5742 5778 1.0E-46 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 498 657 5.0E-46 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 6108 6176 1.44E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 3045 3588 3.79E-151 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 3577 3636 4.2E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 5060 5123 8.2E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 1015 1076 3.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 6117 6176 3.5E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00550 Phosphopantetheine attachment site 2541 2604 1.8E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 2532 2637 8.64E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 6381 6638 4.78E-41 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1606 1779 1.33E-38 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1559 1576 1.33E-38 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 5138 5335 4.56E-51 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 4280 4525 1.48E-56 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 5557 6128 4.32E-159 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 4578 4972 2.0E-127 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5618 6027 6.3E-131 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3107 3490 1.9E-115 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2061 2452 1.3E-127 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 525 927 9.2E-116 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 2004 2552 2.49E-158 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 38 241 3.45E-51 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 4517 5071 1.44E-150 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF56801 464 1025 1.83E-148 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 3568 3636 4.58E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 649 660 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2163 2174 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5757 5768 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 ProSitePatterns PS00455 Putative AMP-binding domain signature. 4694 4705 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 4956 5031 9.0E-13 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 6012 6088 8.3E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 911 986 1.1E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 2436 2512 4.7E-14 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF13193 AMP-binding enzyme C-terminal domain 3474 3548 1.6E-10 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 898 1017 3.5E-41 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 5999 6118 2.5E-37 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 2423 2542 1.7E-41 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 3461 3578 9.7E-39 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.30.300.30 4943 5061 4.3E-39 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1398 1552 3.6E-38 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3945 4087 5.3E-31 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 6505 6640 1.2E-25 T 19-04-2016 IPR010060 Non-ribosomal peptide synthase AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 228 491 3.67E-59 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 5062 5125 1.5E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 3579 3642 1.5E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 1018 1079 1.3E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 6119 6177 3.8E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:1.10.1200.10 2543 2606 1.7E-25 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1088 1265 3.48E-38 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 5779 5916 3.1E-38 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 3234 3378 1.4E-29 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 4718 4859 4.0E-34 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF47336 1005 1077 9.16E-18 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 1092 1390 1.4E-43 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 5141 5433 2.1E-70 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 2624 2921 3.8E-71 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 40 339 7.2E-77 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 4096 4396 2.0E-58 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 1598 1881 6.2E-54 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 6194 6495 2.2E-53 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00668 Condensation domain 3654 3936 1.6E-50 T 19-04-2016 IPR001242 Condensation domain AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 658 809 4.9E-28 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Gene3D G3DSA:3.40.50.980 2172 2326 8.7E-47 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095:SF137 2603 3210 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095:SF137 4657 5734 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095:SF137 685 1170 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 PANTHER PTHR24095:SF137 5750 6088 0.0 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 2627 2803 7.56E-49 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 1765 2015 3.78E-54 T 19-04-2016 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 5600 6004 1.9E-97 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 504 903 1.0E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 3086 3466 8.2E-89 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 4557 4948 9.6E-96 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 Pfam PF00501 AMP-binding enzyme 2040 2428 4.5E-91 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3105 867ac20eb5f13fcc190e094fdce177dc 6646 SUPERFAMILY SSF52777 6190 6369 1.22E-37 T 19-04-2016 AMED_0072 0988e0c8e2849c3d1d1c297a42475439 414 Gene3D G3DSA:3.40.309.10 208 390 1.4E-56 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_0072 0988e0c8e2849c3d1d1c297a42475439 414 Pfam PF00171 Aldehyde dehydrogenase family 3 408 1.2E-121 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_0072 0988e0c8e2849c3d1d1c297a42475439 414 PANTHER PTHR11699 1 413 3.4E-159 T 19-04-2016 AMED_0072 0988e0c8e2849c3d1d1c297a42475439 414 SUPERFAMILY SSF53720 3 412 5.24E-120 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0072 0988e0c8e2849c3d1d1c297a42475439 414 PANTHER PTHR11699:SF108 1 413 3.4E-159 T 19-04-2016 AMED_0072 0988e0c8e2849c3d1d1c297a42475439 414 Gene3D G3DSA:3.40.605.10 3 207 2.5E-60 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 Gene3D G3DSA:1.10.630.10 8 403 7.6E-102 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 SUPERFAMILY SSF48264 9 403 3.93E-79 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 96 107 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 352 363 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 321 336 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 343 352 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 143 159 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 275 286 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 160 175 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PRINTS PR00359 B-class P450 signature 193 215 1.9E-27 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 Pfam PF00067 Cytochrome P450 189 372 4.7E-16 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0636 2a403a451bba0fb2d1aaae108d427565 403 PANTHER PTHR11712 5 403 1.5E-71 T 19-04-2016 AMED_0960 d597c26f80792934444466e832b02898 300 PANTHER PTHR30346:SF0 2 290 7.1E-68 T 19-04-2016 AMED_0960 d597c26f80792934444466e832b02898 300 Gene3D G3DSA:1.10.10.10 4 83 1.8E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0960 d597c26f80792934444466e832b02898 300 Pfam PF03466 LysR substrate binding domain 98 286 1.4E-22 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_0960 d597c26f80792934444466e832b02898 300 PANTHER PTHR30346 2 290 7.1E-68 T 19-04-2016 AMED_0960 d597c26f80792934444466e832b02898 300 SUPERFAMILY SSF46785 6 87 1.7E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0960 d597c26f80792934444466e832b02898 300 Gene3D G3DSA:3.40.190.10 96 174 3.0E-9 T 19-04-2016 AMED_0960 d597c26f80792934444466e832b02898 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.1E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0960 d597c26f80792934444466e832b02898 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.1E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0960 d597c26f80792934444466e832b02898 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.1E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0960 d597c26f80792934444466e832b02898 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.3E-23 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0960 d597c26f80792934444466e832b02898 300 Gene3D G3DSA:3.40.190.10 175 261 3.0E-11 T 19-04-2016 AMED_0960 d597c26f80792934444466e832b02898 300 SUPERFAMILY SSF53850 101 291 5.18E-23 T 19-04-2016 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 Gene3D G3DSA:1.10.1740.10 9 124 1.9E-15 T 19-04-2016 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 PANTHER PTHR30173 2 194 3.4E-53 T 19-04-2016 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 SUPERFAMILY SSF88659 120 192 2.62E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 Gene3D G3DSA:1.10.10.10 134 192 5.7E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 Pfam PF08281 Sigma-70, region 4 135 186 9.1E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 SUPERFAMILY SSF88946 8 121 6.28E-16 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 PANTHER PTHR30173:SF3 2 194 3.4E-53 T 19-04-2016 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 Pfam PF04542 Sigma-70 region 2 33 101 5.3E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1843 dfb8215b29f986fb28dc0984a3cee1b1 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 188 3.2E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PANTHER PTHR11707:SF29 73 320 3.4E-37 T 19-04-2016 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 SUPERFAMILY SSF53774 3 321 5.36E-74 T 19-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 SMART SM00870 5 317 7.5E-91 T 19-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 Pfam PF00710 Asparaginase, N-terminal 6 187 1.8E-41 T 19-04-2016 IPR027474 L-asparaginase, N-terminal AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PANTHER PTHR11707 73 320 3.4E-37 T 19-04-2016 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PIRSF PIRSF001220 1 326 8.5E-65 T 19-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 Gene3D G3DSA:3.40.50.40 205 320 6.0E-17 T 19-04-2016 IPR027473 L-asparaginase, C-terminal domain AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 Gene3D G3DSA:3.40.50.1170 3 190 7.2E-46 T 19-04-2016 IPR027474 L-asparaginase, N-terminal AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PIRSF PIRSF500176 2 323 3.0E-66 T 19-04-2016 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PRINTS PR00139 Asparaginase/glutaminase family signature 77 95 4.5E-10 T 19-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 4.5E-10 T 19-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 AMED_1733 f6b4b904d5b57407cfd1a67cb11d522c 327 PRINTS PR00139 Asparaginase/glutaminase family signature 251 269 4.5E-10 T 19-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 Pfam PF02018 Carbohydrate binding domain 33 144 4.5E-11 T 19-04-2016 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 SUPERFAMILY SSF51445 197 479 8.17E-56 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 SMART SM00636 200 472 2.8E-6 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 PANTHER PTHR11177 171 481 3.4E-55 T 19-04-2016 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 Pfam PF00704 Glycosyl hydrolases family 18 202 473 3.7E-26 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 SUPERFAMILY SSF49785 33 161 5.74E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 Gene3D G3DSA:3.20.20.80 199 480 1.3E-59 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 Gene3D G3DSA:2.60.120.260 32 165 2.0E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 PANTHER PTHR11177:SF195 171 481 3.4E-55 T 19-04-2016 AMED_1552 5923a6cebe2ed572fa2d19eabad0e62d 491 ProSitePatterns PS01095 Chitinases family 18 active site. 311 319 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_3402 e434ee9bd6495801cdf62aa4d0e5c39c 295 Pfam PF04072 Leucine carboxyl methyltransferase 8 184 1.3E-49 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_3402 e434ee9bd6495801cdf62aa4d0e5c39c 295 PANTHER PTHR13600 6 238 1.4E-43 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_3402 e434ee9bd6495801cdf62aa4d0e5c39c 295 PANTHER PTHR13600:SF12 6 238 1.4E-43 T 19-04-2016 AMED_3402 e434ee9bd6495801cdf62aa4d0e5c39c 295 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 6 259 1.7E-49 T 19-04-2016 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_3402 e434ee9bd6495801cdf62aa4d0e5c39c 295 Gene3D G3DSA:3.40.50.150 59 194 2.1E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3402 e434ee9bd6495801cdf62aa4d0e5c39c 295 SUPERFAMILY SSF53335 5 277 1.47E-65 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 282 292 - T 19-04-2016 IPR019793 Peroxidases heam-ligand binding site AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 ProSitePatterns PS00436 Peroxidases active site signature. 119 130 - T 19-04-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PANTHER PTHR30555:SF0 18 756 0.0 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Pfam PF00141 Peroxidase 428 730 6.6E-36 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Pfam PF00141 Peroxidase 113 419 1.2E-45 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 96 121 6.7E-46 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 81 94 6.7E-46 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 290 313 6.7E-46 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 503 529 6.7E-46 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 55 77 6.7E-46 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Hamap MF_01961 Catalase-peroxidase [katG]. 17 757 40.121 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 119 133 4.2E-19 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 342 357 4.2E-19 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 197 209 4.2E-19 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 179 196 4.2E-19 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PRINTS PR00458 Haem peroxidase superfamily signature 282 297 4.2E-19 T 19-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 PANTHER PTHR30555 18 756 0.0 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.420.10 610 732 8.0E-41 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 51 756 0.0 T 19-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.420.10 334 431 6.0E-43 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.420.10 275 297 6.0E-43 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 SUPERFAMILY SSF48113 52 451 5.16E-143 T 19-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 SUPERFAMILY SSF48113 453 756 2.06E-106 T 19-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.520.10 76 229 1.4E-70 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.520.10 735 757 1.0E-60 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.520.10 456 609 1.0E-60 T 19-04-2016 AMED_4105 cde3cfb4b3d04e995648eeffb2131f11 757 Gene3D G3DSA:1.10.520.10 262 274 1.4E-70 T 19-04-2016 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 PANTHER PTHR33164:SF12 17 139 3.7E-15 T 19-04-2016 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 5.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 5.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 5.5E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 Pfam PF01047 MarR family 41 97 1.9E-14 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 SUPERFAMILY SSF46785 16 143 1.7E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 SMART SM00347 30 132 9.3E-17 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 Gene3D G3DSA:1.10.10.10 12 143 3.1E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0439 c7c60fa4c4fd64383dd283de07b3056f 156 PANTHER PTHR33164 17 139 3.7E-15 T 19-04-2016 AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PANTHER PTHR24322 148 180 6.1E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 Pfam PF00106 short chain dehydrogenase 5 187 1.7E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 7.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 7.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 7.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PANTHER PTHR24322 7 132 6.1E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PANTHER PTHR24322:SF57 148 180 6.1E-50 T 19-04-2016 AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PANTHER PTHR24322:SF57 7 132 6.1E-50 T 19-04-2016 AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.1E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.1E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.1E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.1E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 SUPERFAMILY SSF51735 3 240 1.16E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2945 c826cc91a9512a2ec65a1cb3f608ad34 267 Gene3D G3DSA:3.40.50.720 3 241 1.5E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7464 2bcc111913add54473b7e9c08453cd0d 215 Gene3D G3DSA:3.10.129.10 77 199 6.6E-36 T 19-04-2016 IPR029069 HotDog domain AMED_7464 2bcc111913add54473b7e9c08453cd0d 215 PANTHER PTHR12418 76 215 7.4E-18 T 19-04-2016 AMED_7464 2bcc111913add54473b7e9c08453cd0d 215 Pfam PF03061 Thioesterase superfamily 116 186 2.9E-8 T 19-04-2016 IPR006683 Thioesterase domain AMED_7464 2bcc111913add54473b7e9c08453cd0d 215 SUPERFAMILY SSF54637 11 196 3.13E-39 T 19-04-2016 IPR029069 HotDog domain AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 Gene3D G3DSA:2.40.110.10 121 215 2.1E-28 T 19-04-2016 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 SUPERFAMILY SSF47203 224 376 2.09E-40 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 Gene3D G3DSA:1.20.140.10 216 375 1.7E-47 T 19-04-2016 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 Gene3D G3DSA:1.10.540.10 5 117 2.9E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 PANTHER PTHR10909:SF305 5 374 1.6E-93 T 19-04-2016 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 SUPERFAMILY SSF56645 4 224 7.2E-57 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 211 1.3E-16 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 225 371 1.1E-35 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 PANTHER PTHR10909 5 374 1.6E-93 T 19-04-2016 AMED_3842 21c32ae75144aa8d4ee39b8f78d1386f 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 1.0E-20 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 453 1.5E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 Gene3D G3DSA:1.10.287.130 228 305 2.4E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 SUPERFAMILY SSF158472 184 234 4.18E-6 T 19-04-2016 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 PANTHER PTHR24423 77 98 8.1E-58 T 19-04-2016 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 PANTHER PTHR24423 178 452 8.1E-58 T 19-04-2016 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 SUPERFAMILY SSF47384 221 307 9.61E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 SMART SM00304 184 237 2.8E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 SUPERFAMILY SSF55874 308 453 3.41E-31 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 Gene3D G3DSA:3.30.565.10 309 452 2.3E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 2.5E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 432 2.5E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 2.5E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 Pfam PF00672 HAMP domain 164 234 6.4E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 SMART SM00388 238 309 2.4E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 308 4.4E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5666 1dfde2c37c2c1c317d1a234e3645599e 454 SMART SM00387 348 454 1.2E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3209 b0dced2f36f90c0c0a5d84464279dba9 160 SUPERFAMILY SSF109854 6 155 3.51E-37 T 19-04-2016 AMED_3209 b0dced2f36f90c0c0a5d84464279dba9 160 Pfam PF04978 Protein of unknown function (DUF664) 22 156 3.7E-39 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_3209 b0dced2f36f90c0c0a5d84464279dba9 160 Gene3D G3DSA:1.20.120.450 5 160 1.5E-40 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 PANTHER PTHR30173:SF15 1 391 3.4E-190 T 19-04-2016 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 36 67 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 SUPERFAMILY SSF88946 20 86 6.28E-11 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 Gene3D G3DSA:1.10.1740.10 9 81 1.4E-10 T 19-04-2016 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 171 3.5E-14 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 PANTHER PTHR30173 1 391 3.4E-190 T 19-04-2016 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 Pfam PF08281 Sigma-70, region 4 120 170 1.6E-9 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 SUPERFAMILY SSF88659 109 171 4.11E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 Pfam PF04542 Sigma-70 region 2 20 81 1.8E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 Gene3D G3DSA:1.25.40.10 378 406 6.8E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8644 54d1698be2bde44065d2d0162c32b70c 421 Gene3D G3DSA:1.10.10.10 111 172 3.3E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 Gene3D G3DSA:3.40.50.2020 168 293 1.3E-41 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 SUPERFAMILY SSF53271 77 314 8.56E-60 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 136 151 - T 19-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 Gene3D G3DSA:3.40.50.2020 8 167 4.6E-69 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 13 323 4.4E-115 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 12 128 3.5E-44 T 19-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 Pfam PF14572 Phosphoribosyl synthetase-associated domain 216 322 1.5E-21 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 PANTHER PTHR10210:SF41 1 323 1.4E-166 T 19-04-2016 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 PANTHER PTHR10210 1 323 1.4E-166 T 19-04-2016 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 SMART SM01400 12 128 8.1E-69 T 19-04-2016 AMED_8235 cfb5ff28282674f9701d71c9fa13c3c9 326 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 12 323 44.98 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_4162 e7ebf70cd5bd33b5bef4f59793242e5a 280 Gene3D G3DSA:1.10.10.10 132 216 6.3E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4162 e7ebf70cd5bd33b5bef4f59793242e5a 280 PANTHER PTHR33169 118 220 8.6E-23 T 19-04-2016 AMED_4162 e7ebf70cd5bd33b5bef4f59793242e5a 280 PANTHER PTHR33169:SF11 118 220 8.6E-23 T 19-04-2016 AMED_4162 e7ebf70cd5bd33b5bef4f59793242e5a 280 SUPERFAMILY SSF46785 132 230 4.01E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4162 e7ebf70cd5bd33b5bef4f59793242e5a 280 Pfam PF03551 Transcriptional regulator PadR-like family 136 203 8.4E-18 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_5016 ada37f5b73d806ef17f43a4df906a447 196 SUPERFAMILY SSF46689 11 91 2.05E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5016 ada37f5b73d806ef17f43a4df906a447 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 6.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5016 ada37f5b73d806ef17f43a4df906a447 196 PANTHER PTHR30055:SF45 5 191 5.8E-48 T 19-04-2016 AMED_5016 ada37f5b73d806ef17f43a4df906a447 196 Gene3D G3DSA:1.10.357.10 13 192 1.0E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5016 ada37f5b73d806ef17f43a4df906a447 196 PANTHER PTHR30055 5 191 5.8E-48 T 19-04-2016 AMED_5822 7eb3b01292247cd2c7d273e238dbf608 111 SUPERFAMILY SSF53720 2 80 3.23E-6 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_5822 7eb3b01292247cd2c7d273e238dbf608 111 Gene3D G3DSA:3.40.309.10 2 51 3.3E-5 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_5822 7eb3b01292247cd2c7d273e238dbf608 111 Pfam PF00171 Aldehyde dehydrogenase family 2 57 5.3E-6 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_0987 cb85d46c2af236f0cfcaa717a656cfcc 169 Pfam PF04138 GtrA-like protein 13 143 1.3E-17 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 SUPERFAMILY SSF46785 25 86 1.79E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 PANTHER PTHR30319 1 257 3.8E-43 T 19-04-2016 AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 PANTHER PTHR30319:SF1 1 257 3.8E-43 T 19-04-2016 AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 Pfam PF08223 PaaX-like protein C-terminal domain 84 239 1.9E-43 T 19-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 Gene3D G3DSA:1.10.10.10 20 79 8.4E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 Pfam PF07848 PaaX-like protein 1 61 8.5E-13 T 19-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 AMED_5047 b30857dd170b6e28eb2a05b417af5244 260 PIRSF PIRSF020623 1 260 1.4E-67 T 19-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 AMED_0105 a747c5d506c305d784fd9d5743759106 419 PIRSF PIRSF500134 1 412 3.1E-141 T 19-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 AMED_0105 a747c5d506c305d784fd9d5743759106 419 PIRSF PIRSF000124 1 409 3.2E-114 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 Gene3D G3DSA:3.40.50.720 1 184 7.5E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0105 a747c5d506c305d784fd9d5743759106 419 Gene3D G3DSA:3.40.50.720 212 412 2.1E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0105 a747c5d506c305d784fd9d5743759106 419 PANTHER PTHR11374:SF18 1 414 9.6E-175 T 19-04-2016 AMED_0105 a747c5d506c305d784fd9d5743759106 419 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 182 272 4.2E-33 T 19-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 390 4.0E-120 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 SUPERFAMILY SSF52413 286 402 1.7E-32 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 161 8.5E-46 T 19-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 SMART SM00984 297 394 6.4E-33 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 297 394 7.4E-26 T 19-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 SUPERFAMILY SSF51735 1 172 1.25E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0105 a747c5d506c305d784fd9d5743759106 419 PANTHER PTHR11374 1 414 9.6E-175 T 19-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 AMED_0105 a747c5d506c305d784fd9d5743759106 419 Gene3D G3DSA:1.20.5.100 185 210 3.9E-14 T 19-04-2016 AMED_0105 a747c5d506c305d784fd9d5743759106 419 SUPERFAMILY SSF48179 182 278 8.84E-29 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_8350 10f9e0e92c12f11128734e9b84728a92 355 SUPERFAMILY SSF53756 17 350 6.73E-53 T 19-04-2016 AMED_8350 10f9e0e92c12f11128734e9b84728a92 355 Pfam PF00534 Glycosyl transferases group 1 175 329 1.2E-23 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_8350 10f9e0e92c12f11128734e9b84728a92 355 PANTHER PTHR12526 117 350 1.0E-44 T 19-04-2016 AMED_8350 10f9e0e92c12f11128734e9b84728a92 355 PANTHER PTHR12526:SF353 117 350 1.0E-44 T 19-04-2016 AMED_8350 10f9e0e92c12f11128734e9b84728a92 355 Gene3D G3DSA:3.40.50.2000 171 327 1.2E-25 T 19-04-2016 AMED_8930 f3271480fefd5e86f2403814978df82a 249 PANTHER PTHR26402 24 248 1.6E-100 T 19-04-2016 AMED_8930 f3271480fefd5e86f2403814978df82a 249 PANTHER PTHR26402:SF316 24 248 1.6E-100 T 19-04-2016 AMED_8930 f3271480fefd5e86f2403814978df82a 249 SMART SM00448 24 135 2.8E-42 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8930 f3271480fefd5e86f2403814978df82a 249 SMART SM00862 171 245 1.2E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8930 f3271480fefd5e86f2403814978df82a 249 SUPERFAMILY SSF52172 20 143 1.71E-41 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8930 f3271480fefd5e86f2403814978df82a 249 Gene3D G3DSA:3.40.50.2300 16 142 1.2E-41 T 19-04-2016 AMED_8930 f3271480fefd5e86f2403814978df82a 249 Pfam PF00072 Response regulator receiver domain 26 134 7.8E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8930 f3271480fefd5e86f2403814978df82a 249 SUPERFAMILY SSF46894 148 246 1.84E-29 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8930 f3271480fefd5e86f2403814978df82a 249 Pfam PF00486 Transcriptional regulatory protein, C terminal 173 245 1.1E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8930 f3271480fefd5e86f2403814978df82a 249 Gene3D G3DSA:1.10.10.10 149 247 8.0E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 PANTHER PTHR24032 1 138 3.6E-15 T 19-04-2016 AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 Gene3D G3DSA:3.60.21.10 3 261 4.2E-36 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 PRINTS PR00114 Serine/threonine phosphatase family signature 4 31 1.9E-6 T 19-04-2016 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04660+3.1.3.16 AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 PRINTS PR00114 Serine/threonine phosphatase family signature 77 101 1.9E-6 T 19-04-2016 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04660+3.1.3.16 AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 PRINTS PR00114 Serine/threonine phosphatase family signature 41 68 1.9E-6 T 19-04-2016 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04660+3.1.3.16 AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 SUPERFAMILY SSF56300 4 249 4.75E-37 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8508 46d2fc3dab04abd7cb01bf4d11546388 266 Pfam PF00149 Calcineurin-like phosphoesterase 5 218 3.6E-11 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_9347 ffaa20c198829413f1aa530be375451e 148 ProSitePatterns PS00893 Nudix box signature. 28 49 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_9347 ffaa20c198829413f1aa530be375451e 148 Pfam PF00293 NUDIX domain 5 120 5.9E-24 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_9347 ffaa20c198829413f1aa530be375451e 148 Gene3D G3DSA:3.90.79.10 5 132 6.0E-33 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_9347 ffaa20c198829413f1aa530be375451e 148 PRINTS PR00502 NUDIX hydrolase family signature 23 37 8.3E-9 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_9347 ffaa20c198829413f1aa530be375451e 148 PRINTS PR00502 NUDIX hydrolase family signature 37 52 8.3E-9 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_9347 ffaa20c198829413f1aa530be375451e 148 SUPERFAMILY SSF55811 8 127 1.49E-32 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_9347 ffaa20c198829413f1aa530be375451e 148 PANTHER PTHR22769:SF37 7 129 3.9E-29 T 19-04-2016 AMED_9347 ffaa20c198829413f1aa530be375451e 148 PANTHER PTHR22769 7 129 3.9E-29 T 19-04-2016 AMED_2205 f46b1a57dbab24d3eb714081e632b51f 93 Gene3D G3DSA:3.30.70.920 3 78 1.1E-22 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2205 f46b1a57dbab24d3eb714081e632b51f 93 Pfam PF01037 Lrp/AsnC ligand binding domain 6 76 2.8E-14 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2205 f46b1a57dbab24d3eb714081e632b51f 93 SUPERFAMILY SSF54909 2 77 8.18E-17 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2205 f46b1a57dbab24d3eb714081e632b51f 93 PANTHER PTHR30154 2 80 1.5E-16 T 19-04-2016 AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 Pfam PF13175 AAA ATPase domain 7 54 5.3E-9 T 19-04-2016 AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 SUPERFAMILY SSF52540 7 117 2.85E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 SUPERFAMILY SSF52540 153 345 2.85E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 PANTHER PTHR40396 159 389 3.0E-17 T 19-04-2016 AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 222 329 2.2E-11 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 Gene3D G3DSA:3.40.50.300 168 344 2.0E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 Gene3D G3DSA:3.40.50.300 7 116 2.0E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2750 93bdc180f92ed550f3ea6fa02c46975a 390 PIRSF PIRSF029347 5 354 3.2E-29 T 19-04-2016 IPR014555 RecF-like AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 SUPERFAMILY SSF52343 109 244 2.75E-29 T 19-04-2016 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 Gene3D G3DSA:2.40.30.10 11 100 4.1E-21 T 19-04-2016 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 40 52 2.3E-7 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 120 139 2.3E-7 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 PRINTS PR00410 Phenol hydroxylase reductase family signature 210 218 2.3E-7 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 Pfam PF00175 Oxidoreductase NAD-binding domain 121 224 2.8E-9 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 Pfam PF00970 Oxidoreductase FAD-binding domain 22 108 1.7E-12 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 PANTHER PTHR19370:SF123 12 243 2.8E-44 T 19-04-2016 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 SUPERFAMILY SSF63380 10 110 9.5E-23 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 Gene3D G3DSA:3.40.50.80 101 238 4.5E-28 T 19-04-2016 AMED_1485 6f7c0d454227dded1b2963d2c11a71f7 247 PANTHER PTHR19370 12 243 2.8E-44 T 19-04-2016 AMED_6562 341211df54dffcf251f9b821969d11b1 243 SUPERFAMILY SSF55781 33 181 7.52E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_6562 341211df54dffcf251f9b821969d11b1 243 Gene3D G3DSA:1.10.10.10 185 238 6.7E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6562 341211df54dffcf251f9b821969d11b1 243 SUPERFAMILY SSF52172 166 234 4.97E-10 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6562 341211df54dffcf251f9b821969d11b1 243 Gene3D G3DSA:3.30.450.40 19 184 8.4E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_6562 341211df54dffcf251f9b821969d11b1 243 SMART SM01012 181 236 4.9E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6562 341211df54dffcf251f9b821969d11b1 243 Pfam PF03861 ANTAR domain 183 235 1.7E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6562 341211df54dffcf251f9b821969d11b1 243 Pfam PF13185 GAF domain 32 165 5.8E-10 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6562 341211df54dffcf251f9b821969d11b1 243 PIRSF PIRSF036625 2 243 3.8E-49 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_0387 22aa1328d074a176f558a7d4c73d4bd4 443 TIGRFAM TIGR03173 pbuX: xanthine permease 21 429 2.0E-142 T 19-04-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 AMED_0387 22aa1328d074a176f558a7d4c73d4bd4 443 PANTHER PTHR11119 6 430 4.8E-101 T 19-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_0387 22aa1328d074a176f558a7d4c73d4bd4 443 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 344 364 - T 19-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 AMED_0387 22aa1328d074a176f558a7d4c73d4bd4 443 PANTHER PTHR11119:SF3 6 430 4.8E-101 T 19-04-2016 AMED_0387 22aa1328d074a176f558a7d4c73d4bd4 443 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 17 427 6.4E-102 T 19-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 AMED_0387 22aa1328d074a176f558a7d4c73d4bd4 443 Pfam PF00860 Permease family 18 397 1.9E-94 T 19-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 Gene3D G3DSA:1.10.443.10 284 467 1.9E-36 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 Pfam PF00589 Phage integrase family 290 461 1.7E-18 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 SUPERFAMILY SSF56349 128 468 3.53E-49 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 Gene3D G3DSA:1.10.150.130 128 247 3.2E-10 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 PANTHER PTHR30349 285 475 5.1E-33 T 19-04-2016 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 PANTHER PTHR30349 130 188 5.1E-33 T 19-04-2016 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 PANTHER PTHR30349 209 267 5.1E-33 T 19-04-2016 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 PANTHER PTHR30349:SF20 285 475 5.1E-33 T 19-04-2016 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 PANTHER PTHR30349:SF20 130 188 5.1E-33 T 19-04-2016 AMED_7085 4ee89dcfbac77b9fe6f402fed0a0d96b 545 PANTHER PTHR30349:SF20 209 267 5.1E-33 T 19-04-2016 AMED_3470 81a408c9c189e041929bca09b4b57825 84 Pfam PF14117 Domain of unknown function (DUF4287) 2 59 5.5E-23 T 19-04-2016 IPR025629 Protein of unknown function DUF4287 AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 Pfam PF12706 Beta-lactamase superfamily domain 106 301 1.4E-49 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 PANTHER PTHR15032:SF4 83 353 1.1E-105 T 19-04-2016 AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 PIRSF PIRSF038896 2 337 5.5E-92 T 19-04-2016 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 SUPERFAMILY SSF56281 89 165 3.41E-35 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 SUPERFAMILY SSF56281 193 340 3.41E-35 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 Gene3D G3DSA:3.60.15.10 78 351 2.8E-101 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2528 5974bb4c2e3f4f2f08b086f0f6c8efb5 353 PANTHER PTHR15032 83 353 1.1E-105 T 19-04-2016 AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 SUPERFAMILY SSF51735 299 358 1.34E-95 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 SUPERFAMILY SSF51735 6 188 1.34E-95 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 TIGRFAM TIGR03450 mycothiol_INO1: inositol 1-phosphate synthase 7 356 7.0E-209 T 19-04-2016 IPR017815 Myo-inositol 1-phosphate synthase, actinobacteria AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 SUPERFAMILY SSF55347 193 301 7.85E-35 T 19-04-2016 AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 Pfam PF01658 Myo-inositol-1-phosphate synthase 194 302 6.3E-32 T 19-04-2016 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 Gene3D G3DSA:3.40.50.720 303 357 3.6E-116 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 Gene3D G3DSA:3.40.50.720 4 192 3.6E-116 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 Gene3D G3DSA:3.30.360.10 193 302 1.3E-48 T 19-04-2016 AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 PANTHER PTHR11510 1 358 9.1E-148 T 19-04-2016 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 PANTHER PTHR11510:SF9 1 358 9.1E-148 T 19-04-2016 AMED_9284 3d9c804b174a62cf1e4454f52e8a4e32 362 PIRSF PIRSF015578 2 358 3.3E-96 T 19-04-2016 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 ProSitePatterns PS00622 LuxR-type HTH domain signature. 374 401 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 SUPERFAMILY SSF46894 349 419 2.11E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 Gene3D G3DSA:1.10.10.10 352 416 8.3E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 Pfam PF00196 Bacterial regulatory proteins, luxR family 359 414 7.8E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 374 390 2.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 360 374 2.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 390 402 2.0E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1658 7a03ed96fef6b5e54fde992dad8dd115 427 SMART SM00421 357 414 1.6E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 Pfam PF00720 Subtilisin inhibitor-like 15 97 8.7E-25 T 19-04-2016 IPR023549 Subtilisin inhibitor GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 ProDom PD004028 INHIBITOR PROTEASE SERINE DIRECT SEQUENCING SUBTILISIN PRECURSOR SIGNAL INHIBITOR-LIKE INHIBITOR 32 99 2.0E-14 T 19-04-2016 IPR023549 Subtilisin inhibitor GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 ProSitePatterns PS00999 Streptomyces subtilisin-type inhibitors signature. 35 52 - T 19-04-2016 IPR020054 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor, conserved site GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 Gene3D G3DSA:3.30.350.10 9 111 3.0E-30 T 19-04-2016 IPR023549 Subtilisin inhibitor GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 SUPERFAMILY SSF55399 12 111 9.55E-26 T 19-04-2016 IPR023549 Subtilisin inhibitor GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 PRINTS PR00294 Streptomyces subtilisin inhibitor signature 9 35 1.2E-11 T 19-04-2016 IPR000691 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 PRINTS PR00294 Streptomyces subtilisin inhibitor signature 86 102 1.2E-11 T 19-04-2016 IPR000691 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor GO:0004867 AMED_6637 e542ce5c3c73c0d465e836fb89e1f524 111 PRINTS PR00294 Streptomyces subtilisin inhibitor signature 35 62 1.2E-11 T 19-04-2016 IPR000691 Proteinase inhibitor I16, Streptomyces subtilisin-type inhibitor GO:0004867 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 Pfam PF08386 TAP-like protein 431 525 4.9E-20 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 Pfam PF00561 alpha/beta hydrolase fold 109 284 1.1E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 SUPERFAMILY SSF53474 198 308 9.54E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 SUPERFAMILY SSF53474 95 154 9.54E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 SUPERFAMILY SSF53474 404 502 9.54E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 Gene3D G3DSA:3.40.50.1820 198 323 4.0E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 Gene3D G3DSA:3.40.50.1820 73 156 4.0E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 Gene3D G3DSA:3.40.50.1820 399 517 4.0E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 PANTHER PTHR10992 36 155 1.0E-28 T 19-04-2016 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 PANTHER PTHR10992 196 303 1.0E-28 T 19-04-2016 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 PANTHER PTHR10992 405 519 1.0E-28 T 19-04-2016 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 PANTHER PTHR10992:SF878 36 155 1.0E-28 T 19-04-2016 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 PANTHER PTHR10992:SF878 196 303 1.0E-28 T 19-04-2016 AMED_9245 f5a20af4e1a705ca740812277722e8ac 539 PANTHER PTHR10992:SF878 405 519 1.0E-28 T 19-04-2016 AMED_2582 e3d8bd91672ad99286f8972b9ba00d28 379 Gene3D G3DSA:3.40.50.2300 50 167 7.5E-26 T 19-04-2016 AMED_2582 e3d8bd91672ad99286f8972b9ba00d28 379 Pfam PF13407 Periplasmic binding protein domain 55 315 1.9E-55 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_2582 e3d8bd91672ad99286f8972b9ba00d28 379 Gene3D G3DSA:3.40.50.2300 168 352 2.0E-37 T 19-04-2016 AMED_2582 e3d8bd91672ad99286f8972b9ba00d28 379 PANTHER PTHR30036:SF1 1 365 1.6E-73 T 19-04-2016 AMED_2582 e3d8bd91672ad99286f8972b9ba00d28 379 SUPERFAMILY SSF53822 50 318 1.44E-56 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_2582 e3d8bd91672ad99286f8972b9ba00d28 379 PANTHER PTHR30036 1 365 1.6E-73 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 SUPERFAMILY SSF51971 142 399 1.24E-66 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PANTHER PTHR11938 333 465 1.1E-153 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PANTHER PTHR11938 17 317 1.1E-153 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PANTHER PTHR11938:SF75 333 465 1.1E-153 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PANTHER PTHR11938:SF75 17 317 1.1E-153 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:3.40.50.720 147 233 8.6E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:3.40.50.720 402 478 8.6E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 454 1.4E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:1.10.1060.10 2 146 2.8E-40 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 Gene3D G3DSA:3.50.50.60 234 399 1.7E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 1.5E-22 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 210 220 1.5E-22 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 284 298 1.5E-22 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 1.5E-22 T 19-04-2016 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 131 1.6E-22 T 19-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 472 4.0E-212 T 19-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 AMED_7037 9edb9f6baea42fbfcdc18bb3a52132bf 483 SUPERFAMILY SSF46548 6 153 1.99E-37 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_0126 4aea835182c1c05db2c03a1d2d5466eb 160 ProDom PD095338 YXII PLASMID 1 147 1.0E-19 T 19-04-2016 IPR020323 Protein of unknown function DUF2716 AMED_0126 4aea835182c1c05db2c03a1d2d5466eb 160 Pfam PF10898 Protein of unknown function (DUF2716) 1 134 1.1E-43 T 19-04-2016 IPR020323 Protein of unknown function DUF2716 AMED_1715 7867d9771066278148d7811dd7c2982a 961 Pfam PF13476 AAA domain 3 197 4.6E-18 T 19-04-2016 AMED_1715 7867d9771066278148d7811dd7c2982a 961 Gene3D G3DSA:3.40.50.300 3 229 1.0E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1715 7867d9771066278148d7811dd7c2982a 961 PANTHER PTHR32114 1 845 8.5E-20 T 19-04-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 AMED_1715 7867d9771066278148d7811dd7c2982a 961 SUPERFAMILY SSF52540 3 218 6.97E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1715 7867d9771066278148d7811dd7c2982a 961 SUPERFAMILY SSF52540 317 341 6.97E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1715 7867d9771066278148d7811dd7c2982a 961 PANTHER PTHR32114:SF2 1 845 8.5E-20 T 19-04-2016 AMED_4936 309a0ea2495c1032898b837c388b9593 72 Gene3D G3DSA:3.40.50.150 3 67 4.5E-9 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4936 309a0ea2495c1032898b837c388b9593 72 SUPERFAMILY SSF53335 3 68 7.35E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8856 9fa1862aa41f13dd37fd947f1c278144 256 SUPERFAMILY SSF53335 15 209 1.84E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8856 9fa1862aa41f13dd37fd947f1c278144 256 Pfam PF08241 Methyltransferase domain 40 134 2.2E-25 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_8856 9fa1862aa41f13dd37fd947f1c278144 256 Gene3D G3DSA:3.40.50.150 18 242 6.9E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8856 9fa1862aa41f13dd37fd947f1c278144 256 PANTHER PTHR10108 3 200 3.5E-32 T 19-04-2016 AMED_6628 2b2bdc4035a175a751964002a127270b 389 PANTHER PTHR24078 3 366 6.1E-141 T 19-04-2016 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.60.260.20 216 259 4.3E-16 T 19-04-2016 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.60.260.20 111 142 4.3E-16 T 19-04-2016 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.60.260.20 262 345 1.6E-18 T 19-04-2016 AMED_6628 2b2bdc4035a175a751964002a127270b 389 SMART SM00271 3 60 2.0E-28 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF46565 3 103 2.36E-30 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 40 60 3.5E-22 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 24 39 3.5E-22 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 60 79 3.5E-22 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 PRINTS PR00625 DnaJ domain signature 6 24 3.5E-22 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 PANTHER PTHR24078:SF190 3 366 6.1E-141 T 19-04-2016 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:1.10.287.110 3 102 1.8E-29 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF49493 219 263 2.49E-16 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMED_6628 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF49493 121 154 2.49E-16 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Pfam PF00684 DnaJ central domain 149 213 2.8E-12 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Pfam PF00226 DnaJ domain 4 65 2.0E-24 T 19-04-2016 IPR001623 DnaJ domain AMED_6628 2b2bdc4035a175a751964002a127270b 389 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 386 36.388 T 19-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMED_6628 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF49493 264 355 2.09E-18 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMED_6628 2b2bdc4035a175a751964002a127270b 389 Pfam PF01556 DnaJ C terminal domain 125 344 7.4E-36 T 19-04-2016 IPR002939 Chaperone DnaJ, C-terminal AMED_6628 2b2bdc4035a175a751964002a127270b 389 Gene3D G3DSA:2.10.230.10 143 215 1.8E-18 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_6628 2b2bdc4035a175a751964002a127270b 389 SUPERFAMILY SSF57938 136 216 3.4E-18 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_9132 6b87d164968710907d9602c13c729e1b 333 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 164 283 2.9E-19 T 19-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMED_9132 6b87d164968710907d9602c13c729e1b 333 PANTHER PTHR10209 229 318 2.9E-44 T 19-04-2016 AMED_9132 6b87d164968710907d9602c13c729e1b 333 PANTHER PTHR10209 19 207 2.9E-44 T 19-04-2016 AMED_9132 6b87d164968710907d9602c13c729e1b 333 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 20 120 4.4E-12 T 19-04-2016 IPR026992 Non-haem dioxygenase N-terminal domain AMED_9132 6b87d164968710907d9602c13c729e1b 333 SUPERFAMILY SSF51197 20 313 3.23E-54 T 19-04-2016 AMED_9132 6b87d164968710907d9602c13c729e1b 333 Gene3D G3DSA:2.60.120.330 19 315 6.4E-66 T 19-04-2016 IPR027443 Isopenicillin N synthase-like AMED_9132 6b87d164968710907d9602c13c729e1b 333 PANTHER PTHR10209:SF68 229 318 2.9E-44 T 19-04-2016 AMED_9132 6b87d164968710907d9602c13c729e1b 333 PANTHER PTHR10209:SF68 19 207 2.9E-44 T 19-04-2016 AMED_3809 ab956b0011dca633567a3d0e11ae80bf 113 PANTHER PTHR33204:SF6 10 110 1.9E-27 T 19-04-2016 AMED_3809 ab956b0011dca633567a3d0e11ae80bf 113 Gene3D G3DSA:1.10.10.10 10 109 1.1E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3809 ab956b0011dca633567a3d0e11ae80bf 113 PANTHER PTHR33204 10 110 1.9E-27 T 19-04-2016 AMED_3809 ab956b0011dca633567a3d0e11ae80bf 113 SUPERFAMILY SSF46785 9 108 8.77E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3809 ab956b0011dca633567a3d0e11ae80bf 113 Pfam PF01638 HxlR-like helix-turn-helix 12 95 2.0E-21 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_2147 5b29132bd540a87d8c1ecbe862a07bd1 252 SUPERFAMILY SSF56300 1 248 3.21E-44 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_2147 5b29132bd540a87d8c1ecbe862a07bd1 252 Gene3D G3DSA:3.60.21.10 3 211 7.5E-35 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_2147 5b29132bd540a87d8c1ecbe862a07bd1 252 Pfam PF00149 Calcineurin-like phosphoesterase 3 185 2.1E-15 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_2147 5b29132bd540a87d8c1ecbe862a07bd1 252 PANTHER PTHR12905 3 202 2.4E-30 T 19-04-2016 AMED_2147 5b29132bd540a87d8c1ecbe862a07bd1 252 PANTHER PTHR12905:SF7 3 202 2.4E-30 T 19-04-2016 AMED_2147 5b29132bd540a87d8c1ecbe862a07bd1 252 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 1 250 34.612 T 19-04-2016 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 AMED_0680 81df9f90f39637604d967d196607931f 278 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 6.0E-34 T 19-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 3.4E-53 T 19-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 PIRSF PIRSF002158 4 274 5.6E-91 T 19-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 SMART SM01382 125 253 5.1E-86 T 19-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 SUPERFAMILY SSF50104 127 266 7.22E-54 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMED_0680 81df9f90f39637604d967d196607931f 278 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 19-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 PANTHER PTHR13691:SF5 1 278 2.5E-132 T 19-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMED_0680 81df9f90f39637604d967d196607931f 278 PANTHER PTHR13691 1 278 2.5E-132 T 19-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 SUPERFAMILY SSF50249 3 126 1.3E-49 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0680 81df9f90f39637604d967d196607931f 278 Gene3D G3DSA:2.40.50.140 1 115 4.4E-52 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0680 81df9f90f39637604d967d196607931f 278 Gene3D G3DSA:2.30.30.30 120 196 1.8E-29 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMED_0680 81df9f90f39637604d967d196607931f 278 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.3E-123 T 19-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMED_0680 81df9f90f39637604d967d196607931f 278 Gene3D G3DSA:4.10.950.10 197 271 1.3E-29 T 19-04-2016 IPR014726 Ribosomal protein L2, domain 3 AMED_0680 81df9f90f39637604d967d196607931f 278 SMART SM01383 42 119 2.0E-43 T 19-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0680 81df9f90f39637604d967d196607931f 278 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 46.857 T 19-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMED_3880 bc1832238a4b11fc77d9b9ced563a53e 305 SUPERFAMILY SSF51717 10 279 2.09E-83 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_3880 bc1832238a4b11fc77d9b9ced563a53e 305 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 21 276 1.8E-81 T 19-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_3880 bc1832238a4b11fc77d9b9ced563a53e 305 PANTHER PTHR20941:SF1 7 282 4.6E-93 T 19-04-2016 AMED_3880 bc1832238a4b11fc77d9b9ced563a53e 305 Gene3D G3DSA:3.20.20.20 9 279 6.7E-91 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_3880 bc1832238a4b11fc77d9b9ced563a53e 305 PANTHER PTHR20941 7 282 4.6E-93 T 19-04-2016 AMED_3880 bc1832238a4b11fc77d9b9ced563a53e 305 Pfam PF00809 Pterin binding enzyme 22 262 1.1E-70 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_4496 74375e100d6a5e3cb1b4f0ff12080a4f 195 PANTHER PTHR30328 6 174 2.1E-21 T 19-04-2016 AMED_4496 74375e100d6a5e3cb1b4f0ff12080a4f 195 SUPERFAMILY SSF46689 6 78 1.65E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4496 74375e100d6a5e3cb1b4f0ff12080a4f 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 3.7E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4496 74375e100d6a5e3cb1b4f0ff12080a4f 195 PANTHER PTHR30328:SF12 6 174 2.1E-21 T 19-04-2016 AMED_4496 74375e100d6a5e3cb1b4f0ff12080a4f 195 Gene3D G3DSA:1.10.357.10 12 191 7.6E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5861 aa832ef4f3aa436d9fd224b159643996 213 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 208 24.916 T 19-04-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMED_5861 aa832ef4f3aa436d9fd224b159643996 213 SUPERFAMILY SSF52218 1 167 2.1E-34 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5861 aa832ef4f3aa436d9fd224b159643996 213 Pfam PF02525 Flavodoxin-like fold 3 167 7.2E-30 T 19-04-2016 IPR003680 Flavodoxin-like fold AMED_5861 aa832ef4f3aa436d9fd224b159643996 213 PANTHER PTHR10204 1 201 1.7E-45 T 19-04-2016 AMED_5861 aa832ef4f3aa436d9fd224b159643996 213 Gene3D G3DSA:3.40.50.360 1 178 5.8E-48 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5861 aa832ef4f3aa436d9fd224b159643996 213 PANTHER PTHR10204:SF37 1 201 1.7E-45 T 19-04-2016 AMED_6612 dbbf6c6ba5129583c7d0f4de3e704a95 347 Pfam PF03773 Predicted permease 64 338 6.0E-46 T 19-04-2016 IPR005524 Predicted permease DUF318 AMED_6612 dbbf6c6ba5129583c7d0f4de3e704a95 347 PANTHER PTHR34184 34 338 5.3E-46 T 19-04-2016 AMED_6612 dbbf6c6ba5129583c7d0f4de3e704a95 347 PANTHER PTHR34184:SF1 34 338 5.3E-46 T 19-04-2016 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 SUPERFAMILY SSF53720 4 450 3.93E-153 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 PANTHER PTHR11699 4 455 3.3E-203 T 19-04-2016 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 229 236 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 Gene3D G3DSA:3.40.309.10 243 429 2.4E-56 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 Pfam PF00171 Aldehyde dehydrogenase family 4 449 4.8E-158 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 Gene3D G3DSA:3.40.605.10 4 242 4.3E-92 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 PANTHER PTHR11699:SF46 4 455 3.3E-203 T 19-04-2016 AMED_1809 601cde323e26bfc15386283f31fa39c2 455 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PANTHER PTHR10353:SF36 2 457 2.9E-177 T 19-04-2016 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PANTHER PTHR10353 2 457 2.9E-177 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 356 364 5.8E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 286 300 5.8E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 421 433 5.8E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 397 414 5.8E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 376 387 5.8E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 TIGRFAM TIGR03356 BGL: beta-galactosidase 3 442 1.5E-166 T 19-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 SUPERFAMILY SSF51445 2 451 1.01E-150 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8120 e7220159ea6c37c029f4234e0801a294 464 Gene3D G3DSA:3.20.20.80 1 452 4.2E-147 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 Pfam PF00232 Glycosyl hydrolase family 1 2 450 3.7E-147 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8120 e7220159ea6c37c029f4234e0801a294 464 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 7 21 - T 19-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMED_8230 6c4fe4c4018c98d28807de5af6a19838 130 Gene3D G3DSA:3.90.79.10 6 108 1.9E-18 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8230 6c4fe4c4018c98d28807de5af6a19838 130 PANTHER PTHR22769 13 104 3.2E-12 T 19-04-2016 AMED_8230 6c4fe4c4018c98d28807de5af6a19838 130 SUPERFAMILY SSF55811 6 109 4.06E-19 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8230 6c4fe4c4018c98d28807de5af6a19838 130 PANTHER PTHR22769:SF35 13 104 3.2E-12 T 19-04-2016 AMED_8230 6c4fe4c4018c98d28807de5af6a19838 130 ProSitePatterns PS00893 Nudix box signature. 31 52 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_8230 6c4fe4c4018c98d28807de5af6a19838 130 Pfam PF00293 NUDIX domain 13 108 1.4E-9 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 411 424 - T 19-04-2016 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PANTHER PTHR34876 1 394 3.4E-73 T 19-04-2016 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 Gene3D G3DSA:2.60.40.290 347 446 2.0E-29 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 ProSitePatterns PS00655 Glycosyl hydrolases family 6 signature 1. 96 112 - T 19-04-2016 IPR001524 Glycoside hydrolase, family 6, conserved site GO:0004553|GO:0005975 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 SUPERFAMILY SSF49384 343 446 3.14E-24 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 SMART SM00637 348 446 6.5E-28 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 Pfam PF01341 Glycosyl hydrolases family 6 38 295 1.1E-67 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 SUPERFAMILY SSF51989 30 311 9.68E-89 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 Pfam PF00553 Cellulose binding domain 348 446 1.2E-23 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 Gene3D G3DSA:3.20.20.40 29 309 1.0E-91 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 176 189 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 119 134 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 278 292 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 207 217 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 91 104 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 239 252 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 254 274 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_3992 3f3e0794d2d9f746c756749e66bfe3a2 447 PRINTS PR00733 Glycosyl hydrolase family 6 signature 48 67 3.0E-45 T 19-04-2016 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 16 416 4.2E-123 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 ProSitePatterns PS00455 Putative AMP-binding domain signature. 137 148 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 Gene3D G3DSA:3.40.50.980 144 304 1.5E-32 T 19-04-2016 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 Gene3D G3DSA:2.30.38.10 305 382 1.3E-25 T 19-04-2016 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 Pfam PF00501 AMP-binding enzyme 2 392 1.0E-86 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 Gene3D G3DSA:3.30.300.30 386 486 2.6E-38 T 19-04-2016 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 Pfam PF13193 AMP-binding enzyme C-terminal domain 400 475 2.2E-14 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 PANTHER PTHR24095:SF137 2 493 9.2E-166 T 19-04-2016 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 Gene3D G3DSA:3.40.50.980 2 143 7.4E-41 T 19-04-2016 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 PANTHER PTHR24095 2 493 9.2E-166 T 19-04-2016 AMED_4753 930434ca5228b5bb47e5e52e4189a7f6 495 SUPERFAMILY SSF56801 2 486 3.53E-141 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 Pfam PF00501 AMP-binding enzyme 11 417 7.5E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 499 1.7E-20 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 Gene3D G3DSA:3.30.300.30 417 508 1.3E-29 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 Gene3D G3DSA:3.40.50.980 4 194 3.1E-30 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 SUPERFAMILY SSF56801 4 507 1.57E-136 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 181 192 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 PANTHER PTHR24096 29 507 1.6E-194 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 Gene3D G3DSA:3.40.50.980 195 337 1.0E-36 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 Gene3D G3DSA:2.30.38.10 356 411 1.2E-20 T 19-04-2016 AMED_3385 1e2cb28bef75c68a65572c347eb46edc 510 PANTHER PTHR24096:SF214 29 507 1.6E-194 T 19-04-2016 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 Gene3D G3DSA:3.40.50.150 7 221 5.1E-50 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9225 0622f1ddc7836f36875374416c56eb16 435 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 314 332 - T 19-04-2016 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 Pfam PF00145 C-5 cytosine-specific DNA methylase 10 333 3.9E-53 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9225 0622f1ddc7836f36875374416c56eb16 435 PANTHER PTHR10629 3 391 2.1E-35 T 19-04-2016 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 SUPERFAMILY SSF53335 11 239 2.04E-62 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9225 0622f1ddc7836f36875374416c56eb16 435 SUPERFAMILY SSF53335 273 336 2.04E-62 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9225 0622f1ddc7836f36875374416c56eb16 435 PANTHER PTHR10629:SF32 3 391 2.1E-35 T 19-04-2016 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 169 182 4.7E-12 T 19-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 123 137 4.7E-12 T 19-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 11 27 4.7E-12 T 19-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AMED_9225 0622f1ddc7836f36875374416c56eb16 435 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 12 211 8.9E-35 T 19-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AMED_0614 75a7543d1b85ca673cd5f01da2ce838a 255 Gene3D G3DSA:3.40.50.720 20 122 8.1E-8 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0614 75a7543d1b85ca673cd5f01da2ce838a 255 PANTHER PTHR22604 21 255 7.1E-18 T 19-04-2016 AMED_0614 75a7543d1b85ca673cd5f01da2ce838a 255 SUPERFAMILY SSF51735 21 101 4.47E-9 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0614 75a7543d1b85ca673cd5f01da2ce838a 255 Gene3D G3DSA:3.30.360.10 123 255 1.7E-17 T 19-04-2016 AMED_0614 75a7543d1b85ca673cd5f01da2ce838a 255 SUPERFAMILY SSF55347 81 194 2.18E-10 T 19-04-2016 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 SMART SM01005 239 367 2.2E-63 T 19-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 SUPERFAMILY SSF51419 12 240 1.13E-65 T 19-04-2016 IPR029066 PLP-binding barrel AMED_0741 94f653258c64d064d39ac4509f17bb55 371 Gene3D G3DSA:2.40.37.10 222 369 9.5E-58 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 348 361 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 255 270 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 160 171 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 202 229 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 272 287 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 293 310 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 66 84 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 126 138 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PRINTS PR00992 Alanine racemase signature 30 46 6.5E-64 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 Gene3D G3DSA:3.20.20.10 14 221 8.7E-74 T 19-04-2016 IPR029066 PLP-binding barrel AMED_0741 94f653258c64d064d39ac4509f17bb55 371 Hamap MF_01201 Alanine racemase. 5 367 33.735 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 Pfam PF01168 Alanine racemase, N-terminal domain 12 229 7.4E-70 T 19-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 Pfam PF00842 Alanine racemase, C-terminal domain 239 366 2.3E-40 T 19-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PANTHER PTHR30511:SF0 2 370 1.7E-145 T 19-04-2016 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 PANTHER PTHR30511 2 370 1.7E-145 T 19-04-2016 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 TIGRFAM TIGR00492 alr: alanine racemase 8 367 5.2E-96 T 19-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 35 45 - T 19-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0741 94f653258c64d064d39ac4509f17bb55 371 SUPERFAMILY SSF50621 232 368 2.56E-47 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_6873 84fa3d4863a808d48096edb7e79bf43d 331 Pfam PF08012 Protein of unknown function (DUF1702) 5 322 9.6E-136 T 19-04-2016 IPR012964 Protein of unknown function DUF1702 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 PANTHER PTHR10909:SF305 10 350 1.4E-74 T 19-04-2016 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 Gene3D G3DSA:1.10.540.10 7 103 9.0E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 Gene3D G3DSA:2.40.110.10 107 199 1.6E-25 T 19-04-2016 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 SUPERFAMILY SSF56645 6 209 2.88E-50 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 103 4.3E-17 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 Gene3D G3DSA:1.20.140.10 200 361 2.3E-39 T 19-04-2016 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 107 197 7.3E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 SUPERFAMILY SSF47203 216 361 2.26E-33 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 215 357 1.8E-32 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4063 2e712c346df5d6af0c22da674c988aa8 364 PANTHER PTHR10909 10 350 1.4E-74 T 19-04-2016 AMED_2245 806c34c0902451887c97405fe2b682a2 422 SUPERFAMILY SSF51445 56 331 6.53E-48 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2245 806c34c0902451887c97405fe2b682a2 422 PANTHER PTHR11069:SF8 38 422 4.0E-78 T 19-04-2016 AMED_2245 806c34c0902451887c97405fe2b682a2 422 SUPERFAMILY SSF51011 327 421 1.23E-17 T 19-04-2016 AMED_2245 806c34c0902451887c97405fe2b682a2 422 Gene3D G3DSA:3.20.20.80 56 322 7.1E-56 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2245 806c34c0902451887c97405fe2b682a2 422 PANTHER PTHR11069 38 422 4.0E-78 T 19-04-2016 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 AMED_2245 806c34c0902451887c97405fe2b682a2 422 Gene3D G3DSA:2.60.40.1180 323 422 9.0E-30 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_2245 806c34c0902451887c97405fe2b682a2 422 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 332 419 5.0E-6 T 19-04-2016 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain AMED_0341 58b9aac71754015ad581298aa266e355 67 PANTHER PTHR11544 1 67 9.9E-37 T 19-04-2016 AMED_0341 58b9aac71754015ad581298aa266e355 67 Gene3D G3DSA:2.40.50.140 1 66 1.9E-33 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0341 58b9aac71754015ad581298aa266e355 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 19-04-2016 IPR019844 Cold-shock conserved site AMED_0341 58b9aac71754015ad581298aa266e355 67 PIRSF PIRSF002599 1 67 3.4E-25 T 19-04-2016 IPR012156 Cold shock, CspA GO:0003676 AMED_0341 58b9aac71754015ad581298aa266e355 67 PRINTS PR00050 Cold shock protein signature 4 19 9.1E-17 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_0341 58b9aac71754015ad581298aa266e355 67 PRINTS PR00050 Cold shock protein signature 25 34 9.1E-17 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_0341 58b9aac71754015ad581298aa266e355 67 PRINTS PR00050 Cold shock protein signature 40 58 9.1E-17 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_0341 58b9aac71754015ad581298aa266e355 67 SUPERFAMILY SSF50249 1 66 1.84E-26 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0341 58b9aac71754015ad581298aa266e355 67 SMART SM00357 3 67 3.8E-31 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_0341 58b9aac71754015ad581298aa266e355 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.6E-31 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 22 285 1.7E-76 T 19-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 22 37 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 PANTHER PTHR20941 13 292 5.2E-132 T 19-04-2016 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 SUPERFAMILY SSF51717 13 285 7.72E-74 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 PANTHER PTHR20941:SF8 13 292 5.2E-132 T 19-04-2016 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 Gene3D G3DSA:3.20.20.20 16 287 3.7E-81 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_1354 4f491d6bf68f902ddcb43446a57f384f 292 Pfam PF00809 Pterin binding enzyme 23 272 3.6E-63 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 Pfam PF01597 Glycine cleavage H-protein 7 127 3.6E-44 T 19-04-2016 IPR002930 Glycine cleavage system H-protein AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 2.2E-50 T 19-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 Gene3D G3DSA:2.40.50.100 6 127 7.4E-50 T 19-04-2016 AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 PANTHER PTHR11715 2 127 5.4E-63 T 19-04-2016 IPR002930 Glycine cleavage system H-protein AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 127 30.89 T 19-04-2016 IPR002930 Glycine cleavage system H-protein AMED_4991 02cff80a34708d74c01a2c77e02ec598 128 SUPERFAMILY SSF51230 4 127 1.44E-43 T 19-04-2016 IPR011053 Single hybrid motif AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 PANTHER PTHR30346 1 282 8.3E-72 T 19-04-2016 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 Gene3D G3DSA:3.40.190.10 101 190 6.7E-12 T 19-04-2016 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 PANTHER PTHR30346:SF0 1 282 8.3E-72 T 19-04-2016 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 SUPERFAMILY SSF46785 3 84 4.17E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.2E-21 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 Pfam PF03466 LysR substrate binding domain 97 278 5.6E-17 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 Gene3D G3DSA:1.10.10.10 2 84 1.9E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5617 9ab83e202435cd25393cfc7579d8b5fd 282 SUPERFAMILY SSF53850 96 281 5.32E-18 T 19-04-2016 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 SUPERFAMILY SSF53901 2 310 2.97E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 PANTHER PTHR18919:SF109 27 312 1.4E-96 T 19-04-2016 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 Gene3D G3DSA:3.40.47.10 3 158 3.3E-58 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 PANTHER PTHR18919 27 312 1.4E-96 T 19-04-2016 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 Gene3D G3DSA:3.40.47.10 159 311 3.0E-40 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 310 4.3E-92 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 105 181 1.4E-28 T 19-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 311 57.179 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2905 5ec6593cb7268d981524acd29ef8a03a 312 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 221 310 1.5E-24 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SUPERFAMILY SSF52058 2 220 2.38E-49 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_9200 306af51b30aa6e5b94df1541071b31df 235 Gene3D G3DSA:3.80.10.10 105 216 1.9E-32 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 111 133 44.0 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 180 203 0.11 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 134 156 39.0 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 64 87 0.0097 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 41 63 0.11 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00369 157 179 0.23 T 19-04-2016 IPR003591 Leucine-rich repeat, typical subtype AMED_9200 306af51b30aa6e5b94df1541071b31df 235 PANTHER PTHR23155 2 219 1.7E-52 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 Gene3D G3DSA:3.80.10.10 2 104 1.9E-30 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_9200 306af51b30aa6e5b94df1541071b31df 235 Pfam PF13855 Leucine rich repeat 160 215 1.4E-10 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 Pfam PF13855 Leucine rich repeat 66 124 4.1E-9 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 64 83 450.0 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 111 130 87.0 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 87 107 160.0 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 18 37 610.0 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 180 199 13.0 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 134 153 54.0 T 19-04-2016 AMED_9200 306af51b30aa6e5b94df1541071b31df 235 SMART SM00364 157 176 4.9 T 19-04-2016 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 30.741 T 19-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 3.9E-33 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 Pfam PF01197 Ribosomal protein L31 1 66 5.2E-32 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 PANTHER PTHR33280 1 74 1.1E-34 T 19-04-2016 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 PANTHER PTHR33280:SF2 1 74 1.1E-34 T 19-04-2016 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 PRINTS PR01249 Ribosomal protein L31 signature 32 47 2.8E-20 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.8E-20 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 PRINTS PR01249 Ribosomal protein L31 signature 47 65 2.8E-20 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 SUPERFAMILY SSF143800 1 67 2.24E-25 T 19-04-2016 AMED_7791 67ac2a07691e3587942fc7db48ce2c29 76 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3076 b037612ff56c6ee9ecf155d5b576a7d4 199 SUPERFAMILY SSF48498 87 188 2.48E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3076 b037612ff56c6ee9ecf155d5b576a7d4 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 66 9.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3076 b037612ff56c6ee9ecf155d5b576a7d4 199 PANTHER PTHR30055:SF19 5 189 1.8E-51 T 19-04-2016 AMED_3076 b037612ff56c6ee9ecf155d5b576a7d4 199 PANTHER PTHR30055 5 189 1.8E-51 T 19-04-2016 AMED_3076 b037612ff56c6ee9ecf155d5b576a7d4 199 SUPERFAMILY SSF46689 7 84 4.56E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3076 b037612ff56c6ee9ecf155d5b576a7d4 199 Gene3D G3DSA:1.10.357.10 10 191 2.2E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 PANTHER PTHR11219:SF46 1406 1694 1.3E-29 T 19-04-2016 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 PANTHER PTHR11219:SF46 1720 1836 1.3E-29 T 19-04-2016 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR01443 intein_Cterm: intein C-terminal splicing region 2165 2190 5.4E-4 T 19-04-2016 IPR030934 Intein C-terminal splicing region AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 SMART SM00306 2046 2147 7.2E-9 T 19-04-2016 IPR003587 Hint domain N-terminal AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1653 1688 8.4E-4 T 19-04-2016 IPR006530 YD repeat AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1305 1335 2.0E-5 T 19-04-2016 IPR006530 YD repeat AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 247 496 3.7E-5 T 19-04-2016 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF05593 RHS Repeat 1291 1318 5.1E-6 T 19-04-2016 IPR031325 RHS repeat AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF05593 RHS Repeat 1305 1335 3.5E-6 T 19-04-2016 IPR031325 RHS repeat AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 Pfam PF07591 Pretoxin HINT domain 2057 2189 3.1E-10 T 19-04-2016 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 Gene3D G3DSA:2.170.16.10 2043 2192 1.0E-18 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 PANTHER PTHR11219 1406 1694 1.3E-29 T 19-04-2016 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 PANTHER PTHR11219 1720 1836 1.3E-29 T 19-04-2016 AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 SUPERFAMILY SSF51294 2048 2190 1.46E-15 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_5522 ebfa9b910e145ce17b7257fcbb1d2431 2295 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1757 1835 6.4E-16 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 PANTHER PTHR11632 230 571 1.1E-168 T 19-04-2016 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 PANTHER PTHR11632 37 162 1.1E-168 T 19-04-2016 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 SUPERFAMILY SSF56425 340 513 1.07E-36 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 Gene3D G3DSA:3.90.700.10 353 511 5.8E-35 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 SUPERFAMILY SSF51905 518 573 2.25E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 SUPERFAMILY SSF51905 31 160 2.25E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 SUPERFAMILY SSF51905 242 348 2.25E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 Pfam PF00890 FAD binding domain 39 560 7.3E-88 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 252 268 3.6E-6 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 61 3.6E-6 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 Gene3D G3DSA:3.50.50.60 36 171 6.5E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 Gene3D G3DSA:3.50.50.60 515 574 6.5E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 Gene3D G3DSA:3.50.50.60 235 338 6.5E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 PANTHER PTHR11632:SF59 230 571 1.1E-168 T 19-04-2016 AMED_1344 033753fddf5fc61d259dbdf55b1ff8ef 574 PANTHER PTHR11632:SF59 37 162 1.1E-168 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 Gene3D G3DSA:3.40.50.980 13 172 3.5E-37 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 Gene3D G3DSA:2.30.38.10 336 405 9.0E-21 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 Pfam PF00501 AMP-binding enzyme 17 415 5.3E-88 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_1494 e68020179d503840c0e2493e948730bf 514 SUPERFAMILY SSF56801 9 508 2.35E-141 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 Gene3D G3DSA:3.30.300.30 410 507 2.2E-31 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 PANTHER PTHR24096 1 508 6.1E-153 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 Gene3D G3DSA:3.40.50.980 173 325 5.9E-32 T 19-04-2016 AMED_1494 e68020179d503840c0e2493e948730bf 514 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_1494 e68020179d503840c0e2493e948730bf 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 496 5.8E-19 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 PANTHER PTHR11271:SF33 4 402 3.4E-114 T 19-04-2016 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 Gene3D G3DSA:3.20.20.140 59 348 1.4E-89 T 19-04-2016 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 SUPERFAMILY SSF51338 4 57 5.41E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 SUPERFAMILY SSF51338 362 403 5.41E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 Pfam PF01979 Amidohydrolase family 53 401 3.8E-42 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 PANTHER PTHR11271 4 402 3.4E-114 T 19-04-2016 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 SUPERFAMILY SSF51556 57 362 2.47E-86 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 Gene3D G3DSA:2.30.40.10 3 58 9.7E-18 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 Gene3D G3DSA:2.30.40.10 372 403 9.7E-18 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7479 066884dbae144e0f6aeb5a76c6d3fa76 404 Gene3D G3DSA:3.20.20.140 349 371 5.4E-7 T 19-04-2016 AMED_1416 5582c13633f35d8d809aef518b6cece7 141 Pfam PF12802 MarR family 25 84 2.3E-13 T 19-04-2016 AMED_1416 5582c13633f35d8d809aef518b6cece7 141 Gene3D G3DSA:1.10.10.10 8 122 1.3E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1416 5582c13633f35d8d809aef518b6cece7 141 PANTHER PTHR33164 8 141 2.3E-22 T 19-04-2016 AMED_1416 5582c13633f35d8d809aef518b6cece7 141 SUPERFAMILY SSF46785 9 125 6.37E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1416 5582c13633f35d8d809aef518b6cece7 141 SMART SM00347 20 117 6.9E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1416 5582c13633f35d8d809aef518b6cece7 141 PANTHER PTHR33164:SF12 8 141 2.3E-22 T 19-04-2016 AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 SUPERFAMILY SSF46785 12 143 3.69E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 123 143 3.6E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 3.6E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 3.6E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 Pfam PF12802 MarR family 36 96 5.9E-13 T 19-04-2016 AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 Gene3D G3DSA:1.10.10.10 12 143 3.1E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 PANTHER PTHR33164 2 157 2.7E-18 T 19-04-2016 AMED_5502 37be6b02962426ce2b267b4ecbb429d4 157 SMART SM00347 30 133 3.6E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9193 a68c1ffd3044a07bc7583b45fecea46f 208 PANTHER PTHR36834 1 178 6.4E-24 T 19-04-2016 AMED_9193 a68c1ffd3044a07bc7583b45fecea46f 208 Pfam PF04892 VanZ like family 50 180 1.6E-21 T 19-04-2016 IPR006976 VanZ-like AMED_9193 a68c1ffd3044a07bc7583b45fecea46f 208 PANTHER PTHR36834:SF1 1 178 6.4E-24 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 Pfam PF00679 Elongation factor G C-terminus 511 589 4.3E-8 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_8140 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.30.230.10 413 508 9.8E-19 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_8140 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.40.50.300 3 160 3.1E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8140 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.30.70.870 326 391 5.2E-9 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 Pfam PF03764 Elongation factor G, domain IV 411 507 8.2E-11 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 89 100 6.6E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 73 83 6.6E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 7 20 6.6E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 53 61 6.6E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR00315 GTP-binding elongation factor signature 125 134 6.6E-16 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 Pfam PF14492 Elongation Factor G, domain II 320 384 9.3E-7 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_8140 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF52540 4 216 5.57E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8140 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:2.40.30.10 221 312 2.0E-11 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF50447 200 314 3.09E-14 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_8140 71034516a207689022fc824c4f2515dd 591 PANTHER PTHR23115 7 411 2.2E-83 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 SMART SM00889 392 508 4.1E-4 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PANTHER PTHR23115:SF66 7 411 2.2E-83 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 151 9.3E-26 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_8140 71034516a207689022fc824c4f2515dd 591 PANTHER PTHR23115 440 589 2.2E-83 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF54211 410 507 3.19E-10 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_8140 71034516a207689022fc824c4f2515dd 591 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 111 134 2.6E-15 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 446 468 2.6E-15 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 431 445 2.6E-15 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 480 497 2.6E-15 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF54980 511 589 5.28E-7 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_8140 71034516a207689022fc824c4f2515dd 591 Pfam PF00009 Elongation factor Tu GTP binding domain 5 216 2.8E-53 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 SUPERFAMILY SSF54980 319 390 4.32E-8 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_8140 71034516a207689022fc824c4f2515dd 591 PANTHER PTHR23115:SF66 440 589 2.2E-83 T 19-04-2016 AMED_8140 71034516a207689022fc824c4f2515dd 591 Gene3D G3DSA:3.30.70.240 509 589 3.0E-7 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 3.8E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 PANTHER PTHR30055:SF89 1 192 1.2E-58 T 19-04-2016 AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 Gene3D G3DSA:1.10.10.60 2 65 4.3E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 PANTHER PTHR30055 1 192 1.2E-58 T 19-04-2016 AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 SUPERFAMILY SSF46689 5 79 1.23E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 Pfam PF13977 Bacterial transcriptional repressor 109 188 1.7E-6 T 19-04-2016 AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 SUPERFAMILY SSF48498 79 192 3.5E-27 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1949 04378446d7b2d98baef754ee7fba1ac7 195 Gene3D G3DSA:1.10.357.10 69 192 2.0E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Pfam PF07517 SecA DEAD-like domain 14 390 2.0E-89 T 19-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF81886 588 734 1.44E-24 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF52540 406 567 2.88E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.40.50.300 406 568 7.1E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF52540 13 234 3.31E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF52540 357 404 3.31E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SMART SM00958 233 347 1.1E-26 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:1.10.3060.10 607 729 4.5E-23 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.40.50.300 358 404 7.5E-84 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.40.50.300 10 234 7.5E-84 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 176 196 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 69 93 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 328 350 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 123 133 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 365 382 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 107 121 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PRINTS PR00906 SecA protein signature 402 415 8.8E-39 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Gene3D G3DSA:3.90.1440.10 239 355 3.6E-30 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 TIGRFAM TIGR04221 SecA2_Mycobac: accessory Sec system translocase SecA2 11 775 0.0 T 19-04-2016 IPR026389 Protein translocase subunit SecA, Actinobacteria-type AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SUPERFAMILY SSF81767 241 355 3.79E-28 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 ProSitePatterns PS01312 SecA family signature. 489 504 - T 19-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Pfam PF07516 SecA Wing and Scaffold domain 638 728 5.3E-13 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 SMART SM00957 12 391 1.7E-148 T 19-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 PANTHER PTHR30612 26 646 5.2E-199 T 19-04-2016 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Hamap MF_01382 Protein translocase subunit SecA [secA]. 11 734 15.505 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMED_1216 966a34c62d123aa1877dee4d5578a3b0 779 Pfam PF01043 SecA preprotein cross-linking domain 242 347 3.4E-21 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMED_0542 169d34f99f5303885c9f7190c5409ac7 254 PANTHER PTHR11941 1 236 5.9E-63 T 19-04-2016 AMED_0542 169d34f99f5303885c9f7190c5409ac7 254 SUPERFAMILY SSF52096 2 244 2.77E-60 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0542 169d34f99f5303885c9f7190c5409ac7 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 227 1.4E-45 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_0542 169d34f99f5303885c9f7190c5409ac7 254 Gene3D G3DSA:3.90.226.10 3 243 3.7E-57 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0542 169d34f99f5303885c9f7190c5409ac7 254 PANTHER PTHR11941:SF93 1 236 5.9E-63 T 19-04-2016 AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 Pfam PF00005 ABC transporter 23 172 1.6E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 Pfam PF00005 ABC transporter 281 432 4.4E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 PANTHER PTHR24220 9 387 6.6E-166 T 19-04-2016 AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 SUPERFAMILY SSF52540 6 231 1.09E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 SUPERFAMILY SSF52540 279 493 1.61E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 Gene3D G3DSA:3.40.50.300 4 231 1.3E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 Gene3D G3DSA:3.40.50.300 281 503 1.7E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 PANTHER PTHR24220:SF440 9 387 6.6E-166 T 19-04-2016 AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 SMART SM00382 32 220 9.3E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4398 a54147b0282e2ceaf2337a9fdca6517c 506 SMART SM00382 287 480 1.4E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4997 425f061238dc0ce6b96df521105c254d 280 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 279 2.2E-46 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_4997 425f061238dc0ce6b96df521105c254d 280 SUPERFAMILY SSF52096 14 279 3.08E-74 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4997 425f061238dc0ce6b96df521105c254d 280 PANTHER PTHR11941 1 277 7.0E-111 T 19-04-2016 AMED_4997 425f061238dc0ce6b96df521105c254d 280 Gene3D G3DSA:3.90.226.10 13 221 7.6E-59 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4997 425f061238dc0ce6b96df521105c254d 280 PANTHER PTHR11941:SF43 1 277 7.0E-111 T 19-04-2016 AMED_4997 425f061238dc0ce6b96df521105c254d 280 Gene3D G3DSA:1.10.12.10 222 279 2.0E-24 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 Gene3D G3DSA:3.40.50.300 2 261 1.7E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 7.3E-22 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 PANTHER PTHR24220 6 325 4.6E-114 T 19-04-2016 AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 302 2.0E-18 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 SMART SM00382 33 236 2.6E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 SUPERFAMILY SSF52540 4 256 9.18E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 Pfam PF00005 ABC transporter 25 186 1.3E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8370 6591e12e65db91683fc26e41e0e5dbf9 332 PANTHER PTHR24220:SF426 6 325 4.6E-114 T 19-04-2016 AMED_8204 dad29fc3adb85bb6e0816844de95e973 281 PANTHER PTHR31632 3 265 1.2E-70 T 19-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 AMED_8204 dad29fc3adb85bb6e0816844de95e973 281 Pfam PF03239 Iron permease FTR1 family 2 256 1.1E-55 T 19-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 AMED_4312 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 350 372 1.2E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4312 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 188 201 1.2E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4312 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 129 144 1.2E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4312 4e3e339b847342442d55c308692132e6 378 PRINTS PR00412 Epoxide hydrolase signature 106 124 1.2E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4312 4e3e339b847342442d55c308692132e6 378 PANTHER PTHR21661 5 377 4.2E-92 T 19-04-2016 AMED_4312 4e3e339b847342442d55c308692132e6 378 PANTHER PTHR21661:SF35 5 377 4.2E-92 T 19-04-2016 AMED_4312 4e3e339b847342442d55c308692132e6 378 Gene3D G3DSA:3.40.50.1820 4 376 3.1E-132 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4312 4e3e339b847342442d55c308692132e6 378 PIRSF PIRSF001112 3 378 4.5E-102 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_4312 4e3e339b847342442d55c308692132e6 378 Pfam PF06441 Epoxide hydrolase N terminus 8 115 1.2E-34 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_4312 4e3e339b847342442d55c308692132e6 378 SUPERFAMILY SSF53474 3 375 4.59E-92 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4904 25a7eddcfd223eaf535109128b7c9441 309 SUPERFAMILY SSF103481 201 288 2.09E-11 T 19-04-2016 AMED_4904 25a7eddcfd223eaf535109128b7c9441 309 Pfam PF00892 EamA-like transporter family 156 287 5.5E-18 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_4904 25a7eddcfd223eaf535109128b7c9441 309 Pfam PF00892 EamA-like transporter family 13 141 9.6E-21 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_4904 25a7eddcfd223eaf535109128b7c9441 309 PANTHER PTHR12715 10 304 9.1E-73 T 19-04-2016 AMED_4904 25a7eddcfd223eaf535109128b7c9441 309 PANTHER PTHR12715:SF17 10 304 9.1E-73 T 19-04-2016 AMED_4904 25a7eddcfd223eaf535109128b7c9441 309 SUPERFAMILY SSF103481 42 141 6.93E-15 T 19-04-2016 AMED_0801 7253af23d9d9907c4292cb269e139004 110 Gene3D G3DSA:3.40.50.280 27 63 1.2E-7 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0801 7253af23d9d9907c4292cb269e139004 110 SUPERFAMILY SSF52242 24 65 1.02E-8 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 SUPERFAMILY SSF53474 113 354 8.87E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 405 503 1.3E-4 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 SUPERFAMILY SSF53474 456 696 2.83E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 PANTHER PTHR10272 1 344 2.2E-41 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 SUPERFAMILY SSF53474 401 413 2.83E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 Gene3D G3DSA:3.40.50.1820 462 697 1.4E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 Gene3D G3DSA:3.40.50.1820 23 74 2.7E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 Gene3D G3DSA:3.40.50.1820 119 366 2.7E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7459 6a6067df20dc34e2325f7a8749b9e0db 705 Gene3D G3DSA:3.40.50.1820 367 418 1.4E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 PANTHER PTHR30055:SF14 17 206 3.2E-59 T 19-04-2016 AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 PANTHER PTHR30055 17 206 3.2E-59 T 19-04-2016 AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 77 9.4E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 Gene3D G3DSA:1.10.357.10 27 206 1.2E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 SUPERFAMILY SSF46689 28 93 2.49E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 47 2.6E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2501 85852a08a2a07d5b21a5f8680860221c 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 55 78 2.6E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 3.4E-79 T 19-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 1.5E-5 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 617 631 1.5E-5 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 1.5E-11 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 1.5E-11 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 616 632 1.5E-11 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 650 6.0E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PANTHER PTHR22893 2 418 2.9E-257 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 PANTHER PTHR22893:SF56 2 418 2.9E-257 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51971 334 518 8.59E-41 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 Gene3D G3DSA:3.20.20.70 4 360 8.1E-116 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51905 554 648 3.74E-22 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51905 461 519 3.74E-22 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 SUPERFAMILY SSF51395 4 362 3.66E-106 T 19-04-2016 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 Gene3D G3DSA:3.50.50.60 470 623 3.2E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0311 c0d175f20e3c3e37dfc584bfcaf592fb 670 Gene3D G3DSA:3.50.50.60 361 465 4.9E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 SUPERFAMILY SSF56784 1 266 2.49E-58 T 19-04-2016 IPR023214 HAD-like domain AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 Gene3D G3DSA:3.40.50.1000 1 69 8.4E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 Gene3D G3DSA:3.40.50.1000 170 266 8.4E-51 T 19-04-2016 IPR023214 HAD-like domain AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 2 262 3.1E-54 T 19-04-2016 IPR023214 HAD-like domain AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 PANTHER PTHR10000:SF8 1 266 1.7E-58 T 19-04-2016 AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 1 77 6.5E-12 T 19-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 PANTHER PTHR10000 1 266 1.7E-58 T 19-04-2016 AMED_0221 bc65383e6fa5ed577a673023be5ad027 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 1 262 1.2E-44 T 19-04-2016 IPR000150 Cof protein GO:0016787 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 PANTHER PTHR30023 382 807 3.1E-51 T 19-04-2016 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 612 789 2.1E-41 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 693 707 1.7E-21 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 621 643 1.7E-21 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 678 692 1.7E-21 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 459 478 1.7E-21 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 428 598 6.3E-29 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 611 806 8.0E-50 T 19-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 Gene3D G3DSA:3.40.710.10 616 811 1.4E-62 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 Gene3D G3DSA:3.40.710.10 440 492 1.4E-62 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 PANTHER PTHR30023:SF0 382 807 3.1E-51 T 19-04-2016 AMED_8756 8cdbe209589001ef4d1dbd8dc791ec1f 812 SUPERFAMILY SSF56601 434 810 3.02E-52 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PANTHER PTHR22912:SF93 150 470 1.7E-235 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 18 339 1.5E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 SUPERFAMILY SSF55424 358 475 4.12E-30 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 Gene3D G3DSA:3.50.50.60 158 348 1.5E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 359 466 1.1E-25 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 304 326 1.4E-33 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 20 39 1.4E-33 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 1.4E-33 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 291 1.4E-33 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 191 209 1.4E-33 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 Gene3D G3DSA:3.30.390.30 359 471 9.3E-29 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PANTHER PTHR22912 150 470 1.7E-235 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PANTHER PTHR22912 4 134 1.7E-235 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 SUPERFAMILY SSF51905 15 348 1.21E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PANTHER PTHR22912:SF93 4 134 1.7E-235 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 319 326 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 19 41 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 354 375 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 441 461 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 191 216 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 419 434 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 290 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 52 67 1.1E-56 T 19-04-2016 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 Gene3D G3DSA:3.50.50.60 16 157 3.2E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2698 59c6e07ac883697b2f764e539e8c2447 481 PIRSF PIRSF000350 2 478 6.0E-78 T 19-04-2016 AMED_7069 6e17ce4cdf380ec69ffdeffe333e0bf1 1187 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 40 1179 0.0 T 19-04-2016 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 AMED_7069 6e17ce4cdf380ec69ffdeffe333e0bf1 1187 Pfam PF02514 CobN/Magnesium Chelatase 98 1168 0.0 T 19-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 AMED_7069 6e17ce4cdf380ec69ffdeffe333e0bf1 1187 PANTHER PTHR23304:SF96 42 1187 0.0 T 19-04-2016 AMED_7069 6e17ce4cdf380ec69ffdeffe333e0bf1 1187 PANTHER PTHR23304 42 1187 0.0 T 19-04-2016 AMED_2569 06e8f872b5e74cb25b6932e4fe289fea 141 Gene3D G3DSA:3.50.80.10 2 140 2.4E-50 T 19-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain AMED_2569 06e8f872b5e74cb25b6932e4fe289fea 141 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 141 28.673 T 19-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 AMED_2569 06e8f872b5e74cb25b6932e4fe289fea 141 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 140 5.5E-47 T 19-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 AMED_2569 06e8f872b5e74cb25b6932e4fe289fea 141 SUPERFAMILY SSF69500 2 140 2.35E-42 T 19-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain AMED_2569 06e8f872b5e74cb25b6932e4fe289fea 141 PANTHER PTHR10472 2 140 1.5E-48 T 19-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 AMED_2569 06e8f872b5e74cb25b6932e4fe289fea 141 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 3 141 9.9E-39 T 19-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 AMED_8247 0836a6b99e68a36771d5230e86974e12 337 SMART SM00382 30 218 5.4E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8247 0836a6b99e68a36771d5230e86974e12 337 SUPERFAMILY SSF52540 1 239 2.56E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8247 0836a6b99e68a36771d5230e86974e12 337 Gene3D G3DSA:3.40.50.300 1 236 2.7E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8247 0836a6b99e68a36771d5230e86974e12 337 Gene3D G3DSA:3.30.70.260 237 324 6.1E-5 T 19-04-2016 AMED_8247 0836a6b99e68a36771d5230e86974e12 337 PANTHER PTHR24220 3 244 1.2E-75 T 19-04-2016 AMED_8247 0836a6b99e68a36771d5230e86974e12 337 Pfam PF09383 NIL domain 260 324 5.2E-7 T 19-04-2016 IPR018449 NIL domain AMED_8247 0836a6b99e68a36771d5230e86974e12 337 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8247 0836a6b99e68a36771d5230e86974e12 337 Pfam PF00005 ABC transporter 21 169 3.0E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 Gene3D G3DSA:3.30.450.40 84 251 2.5E-49 T 19-04-2016 IPR029016 GAF domain-like AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 Pfam PF09339 IclR helix-turn-helix domain 14 63 6.1E-14 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 SMART SM00346 12 100 2.4E-24 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 SUPERFAMILY SSF46785 14 79 9.85E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 Gene3D G3DSA:1.10.10.10 7 78 1.0E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 PANTHER PTHR30136:SF2 14 262 1.5E-52 T 19-04-2016 AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 PANTHER PTHR30136 14 262 1.5E-52 T 19-04-2016 AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 SUPERFAMILY SSF55781 68 249 4.27E-45 T 19-04-2016 IPR029016 GAF domain-like AMED_5702 c610aff5da9465ef6c2668bfacb10eae 265 Pfam PF01614 Bacterial transcriptional regulator 132 246 1.3E-30 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_5882 62e32e992b927d0122089663a176172c 286 PANTHER PTHR24322 13 138 3.8E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PANTHER PTHR24322 154 185 3.8E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 SUPERFAMILY SSF51735 9 243 6.26E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 7.2E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 7.2E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.2E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 7.2E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 7.2E-24 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 Pfam PF00106 short chain dehydrogenase 11 194 2.8E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 Gene3D G3DSA:3.40.50.720 9 251 2.0E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5882 62e32e992b927d0122089663a176172c 286 PANTHER PTHR24322:SF397 13 138 3.8E-52 T 19-04-2016 AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.0E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5882 62e32e992b927d0122089663a176172c 286 PANTHER PTHR24322:SF397 154 185 3.8E-52 T 19-04-2016 AMED_3727 f80f1fa7b4bbd72867a7b0fd0cd5fc77 143 SUPERFAMILY SSF50891 2 99 2.39E-23 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_3727 f80f1fa7b4bbd72867a7b0fd0cd5fc77 143 Pfam PF04126 Cyclophilin-like 2 98 3.6E-5 T 19-04-2016 IPR025658 Cyclophilin TM1367-like domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Pfam PF00989 PAS fold 295 343 7.4E-10 T 19-04-2016 IPR013767 PAS fold GO:0006355 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55785 279 397 2.69E-21 T 19-04-2016 IPR000014 PAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 PANTHER PTHR21021 410 653 9.5E-51 T 19-04-2016 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 PANTHER PTHR21021 199 292 9.5E-51 T 19-04-2016 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SMART SM00331 432 644 6.9E-28 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55874 677 770 2.02E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 PANTHER PTHR21021:SF19 410 653 9.5E-51 T 19-04-2016 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 PANTHER PTHR21021:SF19 199 292 9.5E-51 T 19-04-2016 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Pfam PF01590 GAF domain 139 274 1.5E-12 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.450.20 287 397 2.4E-24 T 19-04-2016 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SMART SM00091 4 73 0.0061 T 19-04-2016 IPR000014 PAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SMART SM00091 292 358 1.4E-13 T 19-04-2016 IPR000014 PAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 462 644 1.8E-43 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Pfam PF13466 STAS domain 803 884 1.6E-11 T 19-04-2016 IPR002645 STAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SMART SM00065 138 288 5.8E-14 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Pfam PF13581 Histidine kinase-like ATPase domain 654 767 3.5E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.750.24 800 884 1.2E-10 T 19-04-2016 IPR002645 STAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55785 7 100 9.95E-10 T 19-04-2016 IPR000014 PAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Pfam PF08447 PAS fold 29 99 9.4E-10 T 19-04-2016 IPR013655 PAS fold-3 GO:0005515 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF81606 450 644 3.92E-9 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.450.40 116 286 1.2E-19 T 19-04-2016 IPR029016 GAF domain-like AMED_4099 4a3bda48866210f84964d03e5ca57227 899 Gene3D G3DSA:3.30.450.20 7 99 2.6E-13 T 19-04-2016 AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF52091 799 885 2.16E-10 T 19-04-2016 IPR002645 STAS domain AMED_4099 4a3bda48866210f84964d03e5ca57227 899 SUPERFAMILY SSF55781 119 283 6.11E-23 T 19-04-2016 IPR029016 GAF domain-like AMED_4099 4a3bda48866210f84964d03e5ca57227 899 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 288 405 1.5E-21 T 19-04-2016 IPR000014 PAS domain AMED_8360 65154b680557580ed55efbe541e629f8 154 PANTHER PTHR33164 48 146 1.0E-14 T 19-04-2016 AMED_8360 65154b680557580ed55efbe541e629f8 154 SMART SM00347 34 134 5.2E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8360 65154b680557580ed55efbe541e629f8 154 Gene3D G3DSA:1.10.10.10 24 145 2.1E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8360 65154b680557580ed55efbe541e629f8 154 Pfam PF12802 MarR family 41 98 1.6E-8 T 19-04-2016 AMED_8360 65154b680557580ed55efbe541e629f8 154 SUPERFAMILY SSF46785 22 146 3.02E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.6E-19 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 SUPERFAMILY SSF53850 87 276 1.43E-31 T 19-04-2016 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 PANTHER PTHR30579 1 277 3.5E-71 T 19-04-2016 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-7 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 SUPERFAMILY SSF46785 2 110 1.45E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 Gene3D G3DSA:3.40.190.10 84 187 4.1E-19 T 19-04-2016 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 Gene3D G3DSA:1.10.10.10 3 82 6.2E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 Gene3D G3DSA:3.40.190.10 188 237 1.2E-9 T 19-04-2016 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 PANTHER PTHR30579:SF0 1 277 3.5E-71 T 19-04-2016 AMED_6377 19cf52b849186b3a6a52fe504c9a454d 277 Pfam PF03466 LysR substrate binding domain 86 274 2.5E-31 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_0154 f54c9ff94b7cd38d727cdb95dcf813c2 405 SUPERFAMILY SSF103473 11 395 1.18E-39 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0154 f54c9ff94b7cd38d727cdb95dcf813c2 405 Gene3D G3DSA:1.20.1250.20 221 394 5.3E-18 T 19-04-2016 AMED_0154 f54c9ff94b7cd38d727cdb95dcf813c2 405 Gene3D G3DSA:1.20.1250.20 12 190 4.9E-9 T 19-04-2016 AMED_0154 f54c9ff94b7cd38d727cdb95dcf813c2 405 PANTHER PTHR23513 7 400 2.6E-40 T 19-04-2016 AMED_0154 f54c9ff94b7cd38d727cdb95dcf813c2 405 Pfam PF07690 Major Facilitator Superfamily 14 333 5.8E-23 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 Pfam PF01979 Amidohydrolase family 50 388 4.4E-22 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 SUPERFAMILY SSF51338 365 386 4.91E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 SUPERFAMILY SSF51338 1 54 4.91E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 SUPERFAMILY SSF51556 54 364 1.11E-46 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 PANTHER PTHR11271 1 272 2.8E-57 T 19-04-2016 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 PANTHER PTHR11271 291 404 2.8E-57 T 19-04-2016 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 Gene3D G3DSA:2.30.40.10 2 55 7.0E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 Gene3D G3DSA:2.30.40.10 376 403 7.0E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 Gene3D G3DSA:2.30.40.10 350 375 1.1E-7 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 PANTHER PTHR11271:SF33 1 272 2.8E-57 T 19-04-2016 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 PANTHER PTHR11271:SF33 291 404 2.8E-57 T 19-04-2016 AMED_5346 6121e536bb4a5f89ac92c8bf7c64da97 405 Gene3D G3DSA:3.20.20.140 56 349 4.6E-60 T 19-04-2016 AMED_2689 0ab205679b851431511d60e8109fa324 124 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 120 18.202 T 19-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMED_2689 0ab205679b851431511d60e8109fa324 124 TIGRFAM TIGR00494 crcB: protein CrcB 5 119 3.0E-27 T 19-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMED_2689 0ab205679b851431511d60e8109fa324 124 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 111 4.3E-24 T 19-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMED_2689 0ab205679b851431511d60e8109fa324 124 PANTHER PTHR28259 4 119 3.8E-34 T 19-04-2016 AMED_7170 b579f9e1fe091b6bdd2e6824968d2789 336 Pfam PF01636 Phosphotransferase enzyme family 35 256 1.4E-30 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_7170 b579f9e1fe091b6bdd2e6824968d2789 336 SUPERFAMILY SSF56112 33 292 6.98E-38 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_7170 b579f9e1fe091b6bdd2e6824968d2789 336 Gene3D G3DSA:3.90.1200.10 129 287 2.0E-18 T 19-04-2016 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 Gene3D G3DSA:1.20.1560.10 14 321 2.3E-46 T 19-04-2016 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 SMART SM00382 366 556 2.8E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 PANTHER PTHR24221:SF221 23 576 3.8E-183 T 19-04-2016 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 SUPERFAMILY SSF90123 14 322 4.71E-51 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 Pfam PF00005 ABC transporter 357 510 1.9E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 SUPERFAMILY SSF52540 335 578 4.0E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 PANTHER PTHR24221 23 576 3.8E-183 T 19-04-2016 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 Pfam PF00664 ABC transporter transmembrane region 31 295 3.0E-23 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_9049 0d5ad09f8f612fad2924f7cc08f64396 581 Gene3D G3DSA:3.40.50.300 341 574 3.6E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 SMART SM00332 4 246 9.4E-16 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 PANTHER PTHR13832 11 248 2.3E-56 T 19-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 PANTHER PTHR13832:SF226 11 248 2.3E-56 T 19-04-2016 AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 SUPERFAMILY SSF81606 10 248 4.84E-58 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 Gene3D G3DSA:3.60.40.10 11 248 6.1E-65 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 SMART SM00331 17 248 5.5E-27 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_8943 b1145bb67eac7dea35cc4d229dd78275 250 Pfam PF13672 Protein phosphatase 2C 22 217 2.2E-14 T 19-04-2016 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 3.1E-31 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 2.5E-28 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 Gene3D G3DSA:1.20.140.10 222 383 3.3E-56 T 19-04-2016 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 Gene3D G3DSA:1.10.540.10 10 124 1.2E-32 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 383 2.3E-43 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 SUPERFAMILY SSF47203 234 383 4.51E-48 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 342 361 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 SUPERFAMILY SSF56645 10 247 2.36E-85 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 PIRSF PIRSF016578 7 373 6.6E-16 T 19-04-2016 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 PANTHER PTHR10909 19 383 1.9E-201 T 19-04-2016 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 Gene3D G3DSA:2.40.110.10 126 221 2.7E-42 T 19-04-2016 AMED_2478 e0ca70c644b3aeb961c0badeca86a6e4 383 PANTHER PTHR10909:SF190 19 383 1.9E-201 T 19-04-2016 AMED_3282 5bcbd5015308f0a19e34d7cdf67e410b 310 PANTHER PTHR35526:SF1 175 305 2.5E-17 T 19-04-2016 AMED_3282 5bcbd5015308f0a19e34d7cdf67e410b 310 Pfam PF13581 Histidine kinase-like ATPase domain 194 306 2.1E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3282 5bcbd5015308f0a19e34d7cdf67e410b 310 Gene3D G3DSA:3.30.565.10 199 308 8.8E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3282 5bcbd5015308f0a19e34d7cdf67e410b 310 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 14 157 3.9E-31 T 19-04-2016 IPR025847 MEDS domain AMED_3282 5bcbd5015308f0a19e34d7cdf67e410b 310 PANTHER PTHR35526 175 305 2.5E-17 T 19-04-2016 AMED_3282 5bcbd5015308f0a19e34d7cdf67e410b 310 SUPERFAMILY SSF55874 208 308 9.86E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 836 869 1.1 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 716 749 71.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 877 910 150.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00028 796 829 36.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF52540 249 496 3.52E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM00862 16 93 2.7E-14 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF48452 727 866 2.66E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF48452 832 946 2.19E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 PRINTS PR00364 Disease resistance protein signature 274 289 6.9E-6 T 19-04-2016 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 PRINTS PR00364 Disease resistance protein signature 342 356 6.9E-6 T 19-04-2016 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 PRINTS PR00364 Disease resistance protein signature 433 447 6.9E-6 T 19-04-2016 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF48452 95 255 1.02E-24 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 PANTHER PTHR35807 1 319 2.0E-40 T 19-04-2016 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SUPERFAMILY SSF46894 3 93 6.24E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 93 1.3E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 Pfam PF03704 Bacterial transcriptional activator domain 100 238 3.5E-34 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 SMART SM01043 100 238 8.6E-43 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 Gene3D G3DSA:1.25.40.10 720 937 7.5E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 Gene3D G3DSA:3.40.50.300 259 370 9.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4314 2df5c04df9c2c585d309d01848e6b003 1001 Gene3D G3DSA:1.10.10.10 14 96 1.1E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 Pfam PF05426 Alginate lyase 357 416 1.7E-13 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 SUPERFAMILY SSF46689 31 139 7.88E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 SUPERFAMILY SSF48230 364 421 7.69E-6 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 Gene3D G3DSA:3.30.420.10 211 336 9.9E-7 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 PANTHER PTHR30347:SF1 5 359 3.8E-123 T 19-04-2016 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 Gene3D G3DSA:1.50.10.110 358 464 2.8E-19 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 PANTHER PTHR30347 5 359 3.8E-123 T 19-04-2016 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 Pfam PF13565 Homeodomain-like domain 64 135 1.7E-12 T 19-04-2016 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 SUPERFAMILY SSF53098 206 345 6.64E-6 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 Gene3D G3DSA:1.10.10.10 27 72 6.0E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0332 969c5647705b2bc5836ceff4fd9f3ed6 474 Pfam PF13358 DDE superfamily endonuclease 176 321 3.8E-20 T 19-04-2016 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 SUPERFAMILY SSF52743 541 644 3.93E-58 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 SUPERFAMILY SSF52743 141 383 3.93E-58 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PANTHER PTHR10795 272 377 4.4E-49 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PANTHER PTHR10795 535 663 4.4E-49 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PANTHER PTHR10795 72 178 4.4E-49 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PANTHER PTHR10795 200 246 4.4E-49 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 161 172 - T 19-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 580 590 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PRINTS PR00723 Subtilisin serine protease family (S8) signature 579 595 1.6E-17 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PRINTS PR00723 Subtilisin serine protease family (S8) signature 156 175 1.6E-17 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 PRINTS PR00723 Subtilisin serine protease family (S8) signature 230 243 1.6E-17 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 Gene3D G3DSA:3.50.30.30 387 520 5.3E-5 T 19-04-2016 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 Pfam PF00082 Subtilase family 156 617 8.0E-36 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 Gene3D G3DSA:3.40.50.200 111 379 1.3E-63 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 Gene3D G3DSA:3.40.50.200 537 644 1.3E-63 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1695 d39e1304a83258c8494667e947ec8cad 1093 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 234 244 - T 19-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 8.1E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Pfam PF13377 Periplasmic binding protein-like domain 183 341 2.3E-34 T 19-04-2016 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 SUPERFAMILY SSF53822 83 341 2.75E-61 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Gene3D G3DSA:3.40.50.2300 183 341 6.3E-59 T 19-04-2016 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Gene3D G3DSA:1.10.260.40 11 69 5.9E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 PANTHER PTHR30146 10 341 3.1E-103 T 19-04-2016 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 SUPERFAMILY SSF47413 10 61 6.75E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 1.2E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 1.2E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 Gene3D G3DSA:3.40.50.2300 70 182 4.6E-14 T 19-04-2016 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 SMART SM00354 10 80 1.8E-19 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3296 fd3f1141b0fdc2c7b9b9112d66f8b0a0 342 PANTHER PTHR30146:SF48 10 341 3.1E-103 T 19-04-2016 AMED_8563 eb53ff523bbcbe974a588d0e981456b2 241 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 26 235 34.859 T 19-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 AMED_8563 eb53ff523bbcbe974a588d0e981456b2 241 Pfam PF02666 Phosphatidylserine decarboxylase 66 231 1.5E-26 T 19-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 AMED_8563 eb53ff523bbcbe974a588d0e981456b2 241 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 43 234 3.0E-49 T 19-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 AMED_8563 eb53ff523bbcbe974a588d0e981456b2 241 PANTHER PTHR35809 15 238 1.0E-69 T 19-04-2016 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 68 146 1.9E-6 T 19-04-2016 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 151 179 7.1E-6 T 19-04-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 PANTHER PTHR22769:SF7 140 339 1.1E-57 T 19-04-2016 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 Gene3D G3DSA:3.90.79.10 143 336 2.4E-44 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 PANTHER PTHR22769 140 339 1.1E-57 T 19-04-2016 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 ProSitePatterns PS00893 Nudix box signature. 219 240 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 Pfam PF00293 NUDIX domain 184 296 6.3E-16 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_1152 bb82363448a4418c3623d3a6d6f7de73 339 SUPERFAMILY SSF55811 134 298 1.15E-39 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 SUPERFAMILY SSF46557 10 81 1.57E-21 T 19-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 159 8.8E-14 T 19-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 Gene3D G3DSA:1.10.287.180 8 79 6.7E-25 T 19-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 PIRSF PIRSF006092 4 163 9.3E-33 T 19-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 SUPERFAMILY SSF54534 85 159 4.44E-12 T 19-04-2016 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 Gene3D G3DSA:3.10.50.30 81 163 1.2E-16 T 19-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 PANTHER PTHR30437 1 159 3.7E-34 T 19-04-2016 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 Pfam PF03449 Transcription elongation factor, N-terminal 11 79 7.9E-24 T 19-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 23 53 - T 19-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 Hamap MF_00105 Transcription elongation factor GreA [greA]. 8 161 27.361 T 19-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMED_8092 68d88ce565593f2cc9531cd593cc1fbd 167 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 125 141 - T 19-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMED_3877 1a2c2f4791470660506c76e1b7acfe0b 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 262 4.2E-50 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3877 1a2c2f4791470660506c76e1b7acfe0b 286 Gene3D G3DSA:3.90.226.10 3 261 1.4E-73 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3877 1a2c2f4791470660506c76e1b7acfe0b 286 SUPERFAMILY SSF52096 2 264 3.45E-74 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3877 1a2c2f4791470660506c76e1b7acfe0b 286 PANTHER PTHR11941:SF95 1 261 9.8E-100 T 19-04-2016 AMED_3877 1a2c2f4791470660506c76e1b7acfe0b 286 PANTHER PTHR11941 1 261 9.8E-100 T 19-04-2016 AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 SUPERFAMILY SSF51658 8 318 2.36E-59 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 Pfam PF07582 AP endonuclease family 2 C terminus 275 329 1.3E-23 T 19-04-2016 IPR011418 AP endonuclease, family 2, C-terminal AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 PANTHER PTHR12110 93 318 3.2E-76 T 19-04-2016 AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 PANTHER PTHR12110 1 72 3.2E-76 T 19-04-2016 AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 PANTHER PTHR12110:SF17 93 318 3.2E-76 T 19-04-2016 AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 PANTHER PTHR12110:SF17 1 72 3.2E-76 T 19-04-2016 AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 Pfam PF01261 Xylose isomerase-like TIM barrel 22 274 8.8E-37 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_3979 a26096ca367f8cd6881fdec57828c0e7 334 Gene3D G3DSA:3.20.20.150 3 318 1.7E-76 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 Gene3D G3DSA:1.10.10.60 6 63 1.3E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 PANTHER PTHR30055 1 133 4.2E-15 T 19-04-2016 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 SUPERFAMILY SSF48498 76 168 2.18E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 PANTHER PTHR30055:SF53 1 133 4.2E-15 T 19-04-2016 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 SUPERFAMILY SSF46689 5 70 2.15E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 4.9E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5598 2214e72c5ac81d4a2c24fe8f3d50e912 179 Gene3D G3DSA:1.10.357.10 73 167 2.3E-13 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7542 901129eed87b35b65490a28aac79d076 153 Gene3D G3DSA:1.20.1290.10 4 142 1.8E-48 T 19-04-2016 IPR029032 AhpD-like AMED_7542 901129eed87b35b65490a28aac79d076 153 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 77 8.8E-20 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7542 901129eed87b35b65490a28aac79d076 153 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 4.7E-19 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7542 901129eed87b35b65490a28aac79d076 153 SUPERFAMILY SSF69118 6 141 3.8E-41 T 19-04-2016 IPR029032 AhpD-like AMED_7536 1d801e58a3890f398f4f3559375e0aab 1336 Pfam PF11847 Domain of unknown function (DUF3367) 39 665 4.2E-231 T 19-04-2016 IPR021798 Protein of unknown function DUF3367 MetaCyc: PWY-6397|UniPathway: UPA00963 AMED_7536 1d801e58a3890f398f4f3559375e0aab 1336 SUPERFAMILY SSF49785 702 821 5.1E-12 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7536 1d801e58a3890f398f4f3559375e0aab 1336 Gene3D G3DSA:2.60.120.260 689 820 4.8E-9 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7536 1d801e58a3890f398f4f3559375e0aab 1336 Pfam PF00754 F5/8 type C domain 691 771 5.3E-8 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4669 70a4229d0e965da874d34f2660f50afc 473 ProSitePatterns PS01270 Band 7 protein family signature. 136 164 - T 19-04-2016 IPR018080 Band 7/stomatin-like, conserved site AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 156 174 1.1E-34 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 77 98 1.1E-34 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 29 51 1.1E-34 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 132 155 1.1E-34 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 175 196 1.1E-34 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PRINTS PR00721 Stomatin signature 112 129 1.1E-34 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 SMART SM00244 22 180 4.8E-56 T 19-04-2016 IPR001107 Band 7 domain AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PANTHER PTHR10264 3 344 9.1E-121 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 SUPERFAMILY SSF117892 53 187 1.16E-39 T 19-04-2016 IPR001107 Band 7 domain AMED_4669 70a4229d0e965da874d34f2660f50afc 473 PANTHER PTHR10264:SF27 3 344 9.1E-121 T 19-04-2016 AMED_4669 70a4229d0e965da874d34f2660f50afc 473 Pfam PF01145 SPFH domain / Band 7 family 26 196 6.6E-33 T 19-04-2016 IPR001107 Band 7 domain AMED_0381 1c91551f285038e52748617daaf6df53 263 Pfam PF00797 N-acetyltransferase 32 253 1.1E-51 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0381 1c91551f285038e52748617daaf6df53 263 PRINTS PR01543 Arylamine N-acetyltransferase signature 77 99 2.0E-6 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0381 1c91551f285038e52748617daaf6df53 263 PRINTS PR01543 Arylamine N-acetyltransferase signature 53 76 2.0E-6 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0381 1c91551f285038e52748617daaf6df53 263 PRINTS PR01543 Arylamine N-acetyltransferase signature 29 52 2.0E-6 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_0381 1c91551f285038e52748617daaf6df53 263 PANTHER PTHR11786:SF0 13 263 1.8E-48 T 19-04-2016 AMED_0381 1c91551f285038e52748617daaf6df53 263 Gene3D G3DSA:3.30.2140.10 12 93 6.2E-44 T 19-04-2016 AMED_0381 1c91551f285038e52748617daaf6df53 263 Gene3D G3DSA:3.30.2140.10 182 258 6.2E-44 T 19-04-2016 AMED_0381 1c91551f285038e52748617daaf6df53 263 SUPERFAMILY SSF54001 10 257 7.46E-65 T 19-04-2016 AMED_0381 1c91551f285038e52748617daaf6df53 263 PANTHER PTHR11786 13 263 1.8E-48 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 Gene3D G3DSA:2.60.40.420 129 262 6.6E-21 T 19-04-2016 IPR008972 Cupredoxin AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 Gene3D G3DSA:2.60.40.420 22 92 1.9E-9 T 19-04-2016 IPR008972 Cupredoxin AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 SUPERFAMILY SSF49503 28 91 4.22E-6 T 19-04-2016 IPR008972 Cupredoxin AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 PANTHER PTHR11709:SF2 47 263 5.9E-24 T 19-04-2016 AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 SUPERFAMILY SSF49503 136 262 3.39E-13 T 19-04-2016 IPR008972 Cupredoxin AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 PANTHER PTHR11709 47 263 5.9E-24 T 19-04-2016 AMED_8510 f4e054d81cf22ddaa55e2f7f0bed4413 306 Pfam PF07732 Multicopper oxidase 55 93 1.8E-5 T 19-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMED_6329 7eea8cca4404d8f75e40019ebe8c884d 338 Pfam PF01170 Putative RNA methylase family UPF0020 131 256 2.0E-6 T 19-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_6329 7eea8cca4404d8f75e40019ebe8c884d 338 SUPERFAMILY SSF53335 220 304 8.83E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6329 7eea8cca4404d8f75e40019ebe8c884d 338 SUPERFAMILY SSF53335 123 170 8.83E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6329 7eea8cca4404d8f75e40019ebe8c884d 338 Gene3D G3DSA:3.40.50.150 119 178 1.9E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6329 7eea8cca4404d8f75e40019ebe8c884d 338 Gene3D G3DSA:3.40.50.150 217 300 1.9E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 SUPERFAMILY SSF55031 234 343 9.77E-23 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Gene3D G3DSA:3.30.70.360 248 346 1.3E-30 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 PIRSF PIRSF001235 23 432 1.7E-127 T 19-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Pfam PF01546 Peptidase family M20/M25/M40 97 426 6.5E-29 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 PANTHER PTHR32494 21 432 3.3E-129 T 19-04-2016 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 29 428 4.4E-114 T 19-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 96 105 - T 19-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 SUPERFAMILY SSF53187 22 244 5.14E-72 T 19-04-2016 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 SUPERFAMILY SSF53187 357 430 5.14E-72 T 19-04-2016 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Gene3D G3DSA:3.40.630.10 372 430 8.7E-94 T 19-04-2016 AMED_4773 1c7a5982cbbab9f0713b93c1ad8bc3ed 432 Gene3D G3DSA:3.40.630.10 22 247 8.7E-94 T 19-04-2016 AMED_7394 470abfc71eed9b18897802d8e2fe8157 411 Pfam PF04932 O-Antigen ligase 191 330 1.6E-14 T 19-04-2016 IPR007016 O-antigen ligase-related AMED_7047 52d7f4312efc13112d71d64dbba51940 337 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 8 334 2.9E-102 T 19-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_7047 52d7f4312efc13112d71d64dbba51940 337 PANTHER PTHR21712:SF33 4 330 9.2E-99 T 19-04-2016 AMED_7047 52d7f4312efc13112d71d64dbba51940 337 Gene3D G3DSA:1.10.1610.10 3 65 1.2E-23 T 19-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_7047 52d7f4312efc13112d71d64dbba51940 337 PANTHER PTHR21712 4 330 9.2E-99 T 19-04-2016 AMED_7047 52d7f4312efc13112d71d64dbba51940 337 Pfam PF02277 Phosphoribosyltransferase 5 333 7.2E-110 T 19-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_7047 52d7f4312efc13112d71d64dbba51940 337 Gene3D G3DSA:3.40.50.10210 66 321 6.1E-86 T 19-04-2016 AMED_7047 52d7f4312efc13112d71d64dbba51940 337 SUPERFAMILY SSF52733 2 335 2.22E-93 T 19-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 AMED_3833 4ee1c18144347506f42d476c054b0fd5 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_3833 4ee1c18144347506f42d476c054b0fd5 485 Gene3D G3DSA:3.40.309.10 268 456 9.4E-62 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_3833 4ee1c18144347506f42d476c054b0fd5 485 Pfam PF00171 Aldehyde dehydrogenase family 16 481 1.3E-137 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_3833 4ee1c18144347506f42d476c054b0fd5 485 PANTHER PTHR11699 7 481 4.7E-163 T 19-04-2016 AMED_3833 4ee1c18144347506f42d476c054b0fd5 485 Gene3D G3DSA:3.40.605.10 6 267 7.0E-69 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_3833 4ee1c18144347506f42d476c054b0fd5 485 SUPERFAMILY SSF53720 3 482 3.4E-137 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 Pfam PF07729 FCD domain 94 211 2.6E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 SUPERFAMILY SSF46785 6 88 2.07E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.0E-20 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 Gene3D G3DSA:1.20.120.530 91 227 1.4E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 PANTHER PTHR11751 11 110 3.2E-42 T 19-04-2016 AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 SMART SM00345 15 74 9.8E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 Gene3D G3DSA:1.10.10.10 7 78 2.7E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 SMART SM00895 94 219 5.5E-15 T 19-04-2016 IPR011711 GntR, C-terminal AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 SUPERFAMILY SSF48008 90 225 2.07E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 PANTHER PTHR11751:SF342 11 110 3.2E-42 T 19-04-2016 AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 5.9E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2051 6f84814d6db19bf227fa1c6740d56282 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 5.9E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 SUPERFAMILY SSF54665 212 314 1.44E-17 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 SUPERFAMILY SSF56003 78 206 3.93E-23 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 80 220 1.5E-26 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 548 738 9.7E-30 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 PANTHER PTHR11908 502 733 1.3E-66 T 19-04-2016 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 PANTHER PTHR11908 78 481 1.3E-66 T 19-04-2016 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.90.1170.50 221 287 7.7E-12 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 SUPERFAMILY SSF56003 344 738 1.28E-84 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Gene3D G3DSA:3.30.365.10 356 446 1.4E-22 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 PANTHER PTHR11908:SF2 502 733 1.3E-66 T 19-04-2016 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 PANTHER PTHR11908:SF2 78 481 1.3E-66 T 19-04-2016 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 345 575 2.1E-23 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 612 685 3.2E-6 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 79 207 2.1E-12 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 SMART SM01008 236 315 1.1E-8 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_2992 d124edd2e36c6f10f9ef7b5100bbfee2 748 PIRSF PIRSF036389 8 742 1.1E-166 T 19-04-2016 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 PANTHER PTHR11911 14 154 2.5E-36 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 PANTHER PTHR11911 256 414 2.5E-36 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 Gene3D G3DSA:1.25.60.10 168 278 8.3E-35 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 SUPERFAMILY SSF50346 10 89 2.04E-11 T 19-04-2016 IPR011033 PRC-barrel-like AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 SMART SM00924 180 283 4.7E-28 T 19-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 Gene3D G3DSA:3.10.580.10 282 407 3.2E-19 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF00571 CBS domain 359 407 0.0017 T 19-04-2016 IPR000644 CBS domain AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF00571 CBS domain 284 345 6.7E-5 T 19-04-2016 IPR000644 CBS domain AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 PANTHER PTHR11911:SF108 14 154 2.5E-36 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 PANTHER PTHR11911:SF108 256 414 2.5E-36 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF03448 MgtE intracellular N domain 180 281 4.6E-22 T 19-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 SUPERFAMILY SSF54631 282 414 9.73E-25 T 19-04-2016 AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 Pfam PF05239 PRC-barrel domain 7 67 2.9E-5 T 19-04-2016 IPR027275 PRC-barrel domain AMED_1073 9146f30be371945d29d6ed6ff96bf359 425 SUPERFAMILY SSF158791 170 279 6.02E-26 T 19-04-2016 AMED_3064 de1d445e7c3b0d37f580a0495c074b88 130 Pfam PF01638 HxlR-like helix-turn-helix 27 107 1.5E-23 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_3064 de1d445e7c3b0d37f580a0495c074b88 130 PANTHER PTHR33204:SF7 5 125 2.3E-59 T 19-04-2016 AMED_3064 de1d445e7c3b0d37f580a0495c074b88 130 PANTHER PTHR33204 5 125 2.3E-59 T 19-04-2016 AMED_3064 de1d445e7c3b0d37f580a0495c074b88 130 SUPERFAMILY SSF46785 11 116 5.77E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3064 de1d445e7c3b0d37f580a0495c074b88 130 Gene3D G3DSA:1.10.10.10 11 124 8.8E-39 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 Gene3D G3DSA:2.70.50.50 32 173 2.4E-28 T 19-04-2016 AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 SUPERFAMILY SSF81296 32 173 9.52E-33 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 32 170 7.8E-16 T 19-04-2016 IPR004302 Chitin-binding protein, N-terminal AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 PANTHER PTHR34823 1 180 6.1E-51 T 19-04-2016 AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 Pfam PF02839 Carbohydrate binding domain 205 246 2.6E-8 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 SUPERFAMILY SSF51055 206 248 1.44E-16 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 Gene3D G3DSA:2.10.10.20 205 249 2.9E-25 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_9161 addd9b848e9bc6ac9746f9d142e1a1a6 249 SMART SM00495 203 249 5.4E-13 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 13 365 55.266 T 19-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 15 364 3.8E-101 T 19-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 228 237 - T 19-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 Pfam PF00155 Aminotransferase class I and II 33 360 3.9E-59 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 PANTHER PTHR11751:SF398 13 366 2.9E-102 T 19-04-2016 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 Gene3D G3DSA:3.40.640.10 62 259 2.0E-51 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 PANTHER PTHR11751 13 366 2.9E-102 T 19-04-2016 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 Gene3D G3DSA:3.90.1150.10 260 364 3.3E-33 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2252 10c3e33dfc4750a05835780b9f74cffc 366 SUPERFAMILY SSF53383 32 361 1.86E-74 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 SUPERFAMILY SSF75217 99 251 1.05E-38 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 SMART SM00967 15 92 3.9E-9 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 SUPERFAMILY SSF55315 9 86 1.29E-9 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 PANTHER PTHR12029 10 250 7.0E-55 T 19-04-2016 AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 Pfam PF00588 SpoU rRNA Methylase family 107 244 5.0E-31 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 Gene3D G3DSA:3.40.1280.10 100 251 5.0E-44 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 Gene3D G3DSA:3.30.1330.30 15 86 2.1E-13 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_7984 2babafddf1de908cdf86b8e3ea6840ec 253 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 16 89 3.0E-12 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMED_0859 e14a49c1d3a67a39fb350ee3fbc9eefc 101 SUPERFAMILY SSF53927 1 100 3.21E-27 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_0859 e14a49c1d3a67a39fb350ee3fbc9eefc 101 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 73 3.8E-6 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMED_0859 e14a49c1d3a67a39fb350ee3fbc9eefc 101 Gene3D G3DSA:3.40.140.10 1 101 1.7E-29 T 19-04-2016 AMED_0859 e14a49c1d3a67a39fb350ee3fbc9eefc 101 PANTHER PTHR11644 1 100 8.4E-28 T 19-04-2016 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 278 48.921 T 19-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 Pfam PF00701 Dihydrodipicolinate synthetase family 6 276 3.9E-76 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 2.3E-27 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 2.3E-27 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 2.3E-27 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 2.3E-27 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 SMART SM01130 3 278 4.5E-95 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 19-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 Gene3D G3DSA:3.20.20.70 2 276 1.9E-91 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PANTHER PTHR12128:SF34 8 275 7.6E-102 T 19-04-2016 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 19-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 SUPERFAMILY SSF51569 7 275 1.47E-82 T 19-04-2016 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 276 1.9E-77 T 19-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PIRSF PIRSF001365 1 278 2.3E-75 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_7429 8e5bb29a2d567034904ea366c6f6780b 278 PANTHER PTHR12128 8 275 7.6E-102 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 1.6E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 PANTHER PTHR30055 2 186 9.8E-21 T 19-04-2016 AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 SUPERFAMILY SSF48498 86 185 3.2E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 4.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 4.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 Gene3D G3DSA:1.10.357.10 3 186 1.1E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5376 d3e2d72d99ecc4f93e8392fa3d473ab1 196 SUPERFAMILY SSF46689 2 76 4.99E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5388 b79e87a8f86f70f328d937d17fcde294 152 Pfam PF00583 Acetyltransferase (GNAT) family 61 141 9.3E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_5388 b79e87a8f86f70f328d937d17fcde294 152 Gene3D G3DSA:3.40.630.30 7 146 9.5E-24 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5388 b79e87a8f86f70f328d937d17fcde294 152 SUPERFAMILY SSF55729 7 146 1.13E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2092 e5373c755ca099cdcd5c8af3833fd65a 462 PIRSF PIRSF000204 1 461 1.1E-189 T 19-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMED_2092 e5373c755ca099cdcd5c8af3833fd65a 462 SUPERFAMILY SSF52467 288 460 9.81E-73 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_2092 e5373c755ca099cdcd5c8af3833fd65a 462 Gene3D G3DSA:3.40.50.1220 285 460 4.3E-86 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_2092 e5373c755ca099cdcd5c8af3833fd65a 462 PANTHER PTHR10160:SF24 1 462 5.7E-231 T 19-04-2016 AMED_2092 e5373c755ca099cdcd5c8af3833fd65a 462 PANTHER PTHR10160 1 462 5.7E-231 T 19-04-2016 AMED_2092 e5373c755ca099cdcd5c8af3833fd65a 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 457 3.9E-176 T 19-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMED_9175 bbecede852359aaf9482f3fba27c5325 334 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 17 310 4.5E-46 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_9175 bbecede852359aaf9482f3fba27c5325 334 SUPERFAMILY SSF160240 232 311 4.18E-7 T 19-04-2016 AMED_9175 bbecede852359aaf9482f3fba27c5325 334 Gene3D G3DSA:1.20.1510.10 16 224 3.0E-29 T 19-04-2016 IPR027469 Cation efflux protein transmembrane domain AMED_9175 bbecede852359aaf9482f3fba27c5325 334 Gene3D G3DSA:3.30.70.1350 230 310 2.0E-6 T 19-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain AMED_9175 bbecede852359aaf9482f3fba27c5325 334 Pfam PF01545 Cation efflux family 19 226 3.2E-34 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_9175 bbecede852359aaf9482f3fba27c5325 334 PANTHER PTHR13414 13 289 6.1E-93 T 19-04-2016 AMED_9175 bbecede852359aaf9482f3fba27c5325 334 SUPERFAMILY SSF161111 15 229 8.37E-36 T 19-04-2016 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 Gene3D G3DSA:3.90.110.10 163 417 1.2E-80 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 106 126 3.6E-27 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 92 105 3.6E-27 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 160 171 3.6E-27 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 186 198 3.6E-27 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 3.6E-27 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PRINTS PR00732 Glycosyl hydrolase family 4 signature 71 87 3.6E-27 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 Pfam PF02056 Family 4 glycosyl hydrolase 2 180 7.6E-40 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 Gene3D G3DSA:3.40.50.720 1 159 2.7E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 SUPERFAMILY SSF51735 1 157 1.16E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PANTHER PTHR32092 1 418 8.1E-165 T 19-04-2016 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 SUPERFAMILY SSF56327 166 417 1.81E-59 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 191 395 4.6E-39 T 19-04-2016 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AMED_1157 99ba0fa259b6d0cc2fb0843a2963a53c 421 PANTHER PTHR32092:SF5 1 418 8.1E-165 T 19-04-2016 AMED_6565 4f37545a6d33f4cb0b63f4abd3b0b733 372 PANTHER PTHR10009 18 369 1.3E-64 T 19-04-2016 IPR017996 Major royal jelly protein/Protein yellow AMED_6565 4f37545a6d33f4cb0b63f4abd3b0b733 372 Pfam PF03022 Major royal jelly protein 85 353 5.3E-38 T 19-04-2016 IPR017996 Major royal jelly protein/Protein yellow AMED_6565 4f37545a6d33f4cb0b63f4abd3b0b733 372 SUPERFAMILY SSF63829 223 341 2.35E-24 T 19-04-2016 AMED_6565 4f37545a6d33f4cb0b63f4abd3b0b733 372 SUPERFAMILY SSF63829 24 190 2.35E-24 T 19-04-2016 AMED_6565 4f37545a6d33f4cb0b63f4abd3b0b733 372 Gene3D G3DSA:2.120.10.30 16 370 5.6E-126 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 345 8.2E-33 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 8.2E-33 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.2E-33 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 329 8.2E-33 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.2E-33 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.2E-33 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PANTHER PTHR13789 3 363 2.4E-76 T 19-04-2016 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 Gene3D G3DSA:3.50.50.60 3 181 2.8E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 Gene3D G3DSA:3.50.50.60 266 350 2.8E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 SUPERFAMILY SSF51905 265 366 8.03E-67 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 SUPERFAMILY SSF51905 3 176 8.03E-67 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 Pfam PF01494 FAD binding domain 3 341 1.1E-60 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_0646 b85ae643e717f6fb9656654f1daa7a6b 501 PANTHER PTHR13789:SF210 3 363 2.4E-76 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 SUPERFAMILY SSF53067 4 155 3.24E-19 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 Gene3D G3DSA:3.30.420.40 4 186 5.1E-21 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 PANTHER PTHR19375 2 154 3.5E-36 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 PANTHER PTHR19375 175 373 3.5E-36 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 181 194 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_0720 35f0b2bba5885454877c311c409a6559 663 PRINTS PR00301 70kDa heat shock protein signature 54 62 4.2E-10 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_0720 35f0b2bba5885454877c311c409a6559 663 PRINTS PR00301 70kDa heat shock protein signature 332 348 4.2E-10 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_0720 35f0b2bba5885454877c311c409a6559 663 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.2E-10 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_0720 35f0b2bba5885454877c311c409a6559 663 PRINTS PR00301 70kDa heat shock protein signature 187 197 4.2E-10 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_0720 35f0b2bba5885454877c311c409a6559 663 PRINTS PR00301 70kDa heat shock protein signature 362 382 4.2E-10 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_0720 35f0b2bba5885454877c311c409a6559 663 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 335 349 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMED_0720 35f0b2bba5885454877c311c409a6559 663 SUPERFAMILY SSF53067 176 375 8.64E-34 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 Gene3D G3DSA:3.30.420.40 317 356 4.6E-16 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 Gene3D G3DSA:3.30.420.40 187 227 4.6E-16 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 PANTHER PTHR19375:SF186 2 154 3.5E-36 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 TIGRFAM TIGR03931 T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family 508 661 5.0E-16 T 19-04-2016 IPR023840 Type VII secretion system Rv3446c AMED_0720 35f0b2bba5885454877c311c409a6559 663 PANTHER PTHR19375:SF186 175 373 3.5E-36 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 Gene3D G3DSA:3.90.640.10 228 308 5.0E-5 T 19-04-2016 AMED_0720 35f0b2bba5885454877c311c409a6559 663 Pfam PF00012 Hsp70 protein 162 373 7.4E-25 T 19-04-2016 IPR013126 Heat shock protein 70 family AMED_6005 b8d051f8a4690cfdb53be821f74567cd 275 Gene3D G3DSA:3.40.50.150 69 199 4.1E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6005 b8d051f8a4690cfdb53be821f74567cd 275 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 13 260 4.2E-79 T 19-04-2016 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_6005 b8d051f8a4690cfdb53be821f74567cd 275 PANTHER PTHR13600 11 199 3.1E-58 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_6005 b8d051f8a4690cfdb53be821f74567cd 275 PANTHER PTHR13600:SF12 11 199 3.1E-58 T 19-04-2016 AMED_6005 b8d051f8a4690cfdb53be821f74567cd 275 SUPERFAMILY SSF53335 11 261 1.83E-67 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6005 b8d051f8a4690cfdb53be821f74567cd 275 Pfam PF04072 Leucine carboxyl methyltransferase 15 186 9.7E-55 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_6803 cd8d47ba925463e655c41c56682d55c8 121 Pfam PF01638 HxlR-like helix-turn-helix 19 103 1.2E-25 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6803 cd8d47ba925463e655c41c56682d55c8 121 Gene3D G3DSA:1.10.10.10 5 117 1.2E-38 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6803 cd8d47ba925463e655c41c56682d55c8 121 PANTHER PTHR33204 6 121 9.3E-31 T 19-04-2016 AMED_6803 cd8d47ba925463e655c41c56682d55c8 121 SUPERFAMILY SSF46785 6 103 2.08E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0778 3eef568495e98a89dd0ca836548af21f 481 Gene3D G3DSA:3.40.605.10 8 266 2.5E-71 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_0778 3eef568495e98a89dd0ca836548af21f 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_0778 3eef568495e98a89dd0ca836548af21f 481 PANTHER PTHR11699 4 476 4.8E-211 T 19-04-2016 AMED_0778 3eef568495e98a89dd0ca836548af21f 481 PANTHER PTHR11699:SF108 4 476 4.8E-211 T 19-04-2016 AMED_0778 3eef568495e98a89dd0ca836548af21f 481 SUPERFAMILY SSF53720 5 476 5.11E-135 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0778 3eef568495e98a89dd0ca836548af21f 481 Gene3D G3DSA:3.40.309.10 267 450 2.9E-57 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_0778 3eef568495e98a89dd0ca836548af21f 481 Pfam PF00171 Aldehyde dehydrogenase family 22 472 2.9E-133 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 105 3.2E-25 T 19-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 PIRSF PIRSF000161 1 246 1.8E-66 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 108 244 4.3E-31 T 19-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 SUPERFAMILY SSF55347 106 216 6.1E-37 T 19-04-2016 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 PANTHER PTHR20836 1 246 4.1E-75 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 45 245 3.8E-56 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 Gene3D G3DSA:3.40.50.720 2 121 1.6E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 Gene3D G3DSA:3.30.360.10 122 213 3.6E-33 T 19-04-2016 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 SUPERFAMILY SSF51735 3 132 1.01E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 127 144 - T 19-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6316 213a039ff83f05fe4823eab11d3e460a 246 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 3 245 29.817 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6919 0978c6d695e9453ebf161f90b2f4e4fa 289 Gene3D G3DSA:1.10.3720.10 15 276 6.8E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6919 0978c6d695e9453ebf161f90b2f4e4fa 289 PANTHER PTHR32243 10 289 1.2E-97 T 19-04-2016 AMED_6919 0978c6d695e9453ebf161f90b2f4e4fa 289 PANTHER PTHR32243:SF8 10 289 1.2E-97 T 19-04-2016 AMED_6919 0978c6d695e9453ebf161f90b2f4e4fa 289 SUPERFAMILY SSF161098 16 289 2.09E-59 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6919 0978c6d695e9453ebf161f90b2f4e4fa 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 278 1.6E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 136 148 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 PANTHER PTHR24362 377 424 1.8E-81 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 PANTHER PTHR24362 4 313 1.8E-81 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 Pfam PF00069 Protein kinase domain 12 264 1.9E-46 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 PANTHER PTHR24362:SF160 455 535 1.8E-81 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 SUPERFAMILY SSF56112 8 271 7.32E-72 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 SUPERFAMILY SSF56112 448 523 7.32E-72 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 PANTHER PTHR24362 455 535 1.8E-81 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 PANTHER PTHR24362:SF160 377 424 1.8E-81 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 PANTHER PTHR24362:SF160 4 313 1.8E-81 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 Gene3D G3DSA:1.10.510.10 467 516 4.3E-46 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 Gene3D G3DSA:1.10.510.10 116 269 4.3E-46 T 19-04-2016 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 SMART SM00220 12 270 2.6E-60 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0792 1f74db8422a97947bc81c3ae5f64469f 539 Gene3D G3DSA:3.30.200.20 4 115 2.0E-25 T 19-04-2016 AMED_7675 620b777745738c789a675cdb0466dc4c 155 Gene3D G3DSA:3.90.79.10 5 143 7.0E-30 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7675 620b777745738c789a675cdb0466dc4c 155 PANTHER PTHR21340 121 151 8.2E-52 T 19-04-2016 AMED_7675 620b777745738c789a675cdb0466dc4c 155 PANTHER PTHR21340 4 104 8.2E-52 T 19-04-2016 AMED_7675 620b777745738c789a675cdb0466dc4c 155 PRINTS PR00502 NUDIX hydrolase family signature 53 68 6.5E-6 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7675 620b777745738c789a675cdb0466dc4c 155 PRINTS PR00502 NUDIX hydrolase family signature 39 53 6.5E-6 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7675 620b777745738c789a675cdb0466dc4c 155 Pfam PF00293 NUDIX domain 6 148 3.1E-18 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_7675 620b777745738c789a675cdb0466dc4c 155 ProSitePatterns PS00893 Nudix box signature. 44 65 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_7675 620b777745738c789a675cdb0466dc4c 155 PANTHER PTHR21340:SF1 121 151 8.2E-52 T 19-04-2016 AMED_7675 620b777745738c789a675cdb0466dc4c 155 PANTHER PTHR21340:SF1 4 104 8.2E-52 T 19-04-2016 AMED_7675 620b777745738c789a675cdb0466dc4c 155 SUPERFAMILY SSF55811 6 151 3.79E-22 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 PANTHER PTHR13779:SF23 203 226 4.5E-70 T 19-04-2016 AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 SUPERFAMILY SSF52540 22 164 4.72E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 SMART SM00382 21 152 0.0029 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 Gene3D G3DSA:3.40.50.300 23 160 6.8E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 PANTHER PTHR13779 14 171 4.5E-70 T 19-04-2016 AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 PANTHER PTHR13779 203 226 4.5E-70 T 19-04-2016 AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 PANTHER PTHR13779:SF23 14 171 4.5E-70 T 19-04-2016 AMED_5001 4069af8c0e16bc326e4484e7d410030e 353 Pfam PF07728 AAA domain (dynein-related subfamily) 24 116 8.2E-10 T 19-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 SUPERFAMILY SSF46785 5 146 1.15E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 Pfam PF01047 MarR family 39 99 4.1E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 Gene3D G3DSA:1.10.10.10 3 149 1.3E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 PANTHER PTHR33164 1 159 2.6E-33 T 19-04-2016 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 PANTHER PTHR33164:SF1 1 159 2.6E-33 T 19-04-2016 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 SMART SM00347 32 134 3.7E-17 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 4.7E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 4.7E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3339 5d7db0028689d6713a36ccee8b9d3176 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 4.7E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 Gene3D G3DSA:1.20.1250.20 14 201 1.3E-35 T 19-04-2016 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 Gene3D G3DSA:1.20.1250.20 262 462 2.3E-21 T 19-04-2016 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 Pfam PF07690 Major Facilitator Superfamily 21 290 8.7E-38 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 SUPERFAMILY SSF103473 249 462 6.54E-69 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 SUPERFAMILY SSF103473 12 199 6.54E-69 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 413 1.1E-76 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 PANTHER PTHR23501 8 455 3.4E-140 T 19-04-2016 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 PANTHER PTHR23501:SF48 8 455 3.4E-140 T 19-04-2016 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 2.3E-6 T 19-04-2016 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 2.3E-6 T 19-04-2016 AMED_6849 6f5f4601960bd0a317cb68fcf4aa07e6 482 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 2.3E-6 T 19-04-2016 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 SUPERFAMILY SSF88946 8 96 2.67E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 7 159 5.3E-48 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 Gene3D G3DSA:1.10.10.10 100 158 7.1E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 Gene3D G3DSA:1.10.1740.10 7 80 2.4E-11 T 19-04-2016 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 SUPERFAMILY SSF88659 92 159 7.1E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 Pfam PF08281 Sigma-70, region 4 102 152 1.3E-17 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 PANTHER PTHR30173 8 154 1.1E-26 T 19-04-2016 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 156 6.3E-21 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0145 17d16bfff7612b44cdfdbe40bd0ce309 170 Pfam PF04542 Sigma-70 region 2 11 79 3.4E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3829 32be5b4170d382bc65ec1b780c558516 281 Pfam PF13622 Thioesterase-like superfamily 31 271 8.2E-48 T 19-04-2016 AMED_3829 32be5b4170d382bc65ec1b780c558516 281 Gene3D G3DSA:3.10.129.10 124 272 6.4E-39 T 19-04-2016 IPR029069 HotDog domain AMED_3829 32be5b4170d382bc65ec1b780c558516 281 PANTHER PTHR11066 14 271 6.8E-69 T 19-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 AMED_3829 32be5b4170d382bc65ec1b780c558516 281 SUPERFAMILY SSF54637 8 110 2.28E-26 T 19-04-2016 IPR029069 HotDog domain AMED_3829 32be5b4170d382bc65ec1b780c558516 281 Gene3D G3DSA:3.10.129.10 6 109 1.4E-28 T 19-04-2016 IPR029069 HotDog domain AMED_3829 32be5b4170d382bc65ec1b780c558516 281 SUPERFAMILY SSF54637 116 271 6.34E-38 T 19-04-2016 IPR029069 HotDog domain AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 59 82 6.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 52 6.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 SUPERFAMILY SSF46689 27 106 2.29E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 SUPERFAMILY SSF48498 103 209 9.93E-20 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 Gene3D G3DSA:1.10.357.10 27 217 1.5E-41 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 PANTHER PTHR30055:SF43 23 221 6.6E-37 T 19-04-2016 AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 84 1.5E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7148 a4dff035c1c665c0926a31ae5d11d14c 239 PANTHER PTHR30055 23 221 6.6E-37 T 19-04-2016 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 SUPERFAMILY SSF46689 235 278 3.88E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Gene3D G3DSA:1.10.10.60 235 279 1.2E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 7.9E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 7.9E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 SUPERFAMILY SSF46689 3 76 7.7E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 PANTHER PTHR30055 3 90 9.7E-16 T 19-04-2016 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 PANTHER PTHR30055:SF30 3 90 9.7E-16 T 19-04-2016 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Gene3D G3DSA:1.10.357.10 3 174 5.2E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 55 5.8E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4596 7cdfee25e026dd47ecf8aa2d0c7d76d7 280 Pfam PF02796 Helix-turn-helix domain of resolvase 235 276 1.8E-9 T 19-04-2016 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 PANTHER PTHR12110 4 288 2.6E-82 T 19-04-2016 AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 Gene3D G3DSA:3.10.180.10 283 389 3.6E-8 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 PANTHER PTHR12110:SF14 4 288 2.6E-82 T 19-04-2016 AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 Gene3D G3DSA:3.10.180.10 410 586 3.9E-30 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 SUPERFAMILY SSF54593 304 584 8.58E-39 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 SUPERFAMILY SSF51658 6 270 6.08E-73 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 411 517 5.6E-7 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 Pfam PF01261 Xylose isomerase-like TIM barrel 22 221 2.4E-37 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4361 84240fb620182b6269c72245b6aaa8f3 599 Gene3D G3DSA:3.20.20.150 7 269 3.4E-77 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_0102 4c6bc58c69e8f456ccbbe1176e4f6002 211 PANTHER PTHR33169 11 195 2.2E-18 T 19-04-2016 AMED_0102 4c6bc58c69e8f456ccbbe1176e4f6002 211 SUPERFAMILY SSF46785 11 182 1.51E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0102 4c6bc58c69e8f456ccbbe1176e4f6002 211 Pfam PF03551 Transcriptional regulator PadR-like family 15 90 9.3E-13 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_0102 4c6bc58c69e8f456ccbbe1176e4f6002 211 Gene3D G3DSA:1.10.10.10 3 97 3.0E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1262 3e490b499196afe9178aa8fff60638df 412 SUPERFAMILY SSF55073 251 407 2.75E-45 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_1262 3e490b499196afe9178aa8fff60638df 412 PANTHER PTHR10799:SF774 262 403 1.1E-33 T 19-04-2016 AMED_1262 3e490b499196afe9178aa8fff60638df 412 Pfam PF00990 Diguanylate cyclase, GGDEF domain 245 404 7.9E-44 T 19-04-2016 IPR000160 GGDEF domain AMED_1262 3e490b499196afe9178aa8fff60638df 412 SMART SM00267 234 408 4.4E-56 T 19-04-2016 IPR000160 GGDEF domain AMED_1262 3e490b499196afe9178aa8fff60638df 412 PANTHER PTHR10799 262 403 1.1E-33 T 19-04-2016 AMED_1262 3e490b499196afe9178aa8fff60638df 412 Gene3D G3DSA:3.30.70.270 247 407 8.6E-51 T 19-04-2016 AMED_1262 3e490b499196afe9178aa8fff60638df 412 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 241 406 1.0E-47 T 19-04-2016 IPR000160 GGDEF domain AMED_6912 65454760fffc7d335b2959a7d5317f26 728 Gene3D G3DSA:2.160.20.10 179 547 3.2E-38 T 19-04-2016 IPR012334 Pectin lyase fold AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 503 543 3400.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 352 374 0.3 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 403 427 740.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 256 280 4700.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 328 350 0.25 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 294 316 4300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00710 379 402 400.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_6912 65454760fffc7d335b2959a7d5317f26 728 Pfam PF00754 F5/8 type C domain 599 722 9.0E-20 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_6912 65454760fffc7d335b2959a7d5317f26 728 Pfam PF05048 Periplasmic copper-binding protein (NosD) 306 424 7.8E-10 T 19-04-2016 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SUPERFAMILY SSF49785 584 725 5.67E-27 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SUPERFAMILY SSF51126 179 450 6.44E-36 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_6912 65454760fffc7d335b2959a7d5317f26 728 Gene3D G3DSA:2.60.120.260 585 725 1.1E-30 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6912 65454760fffc7d335b2959a7d5317f26 728 SMART SM00231 590 728 3.3E-5 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 PANTHER PTHR30328 2 188 6.2E-22 T 19-04-2016 AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 SUPERFAMILY SSF48498 84 178 9.4E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 Pfam PF13977 Bacterial transcriptional repressor 84 188 1.2E-18 T 19-04-2016 AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 PANTHER PTHR30328:SF11 2 188 6.2E-22 T 19-04-2016 AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 2.6E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 Gene3D G3DSA:1.10.357.10 8 187 5.5E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1347 6d41780df70f29ccfae32b3c8ac9fbb4 201 SUPERFAMILY SSF46689 6 82 8.72E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 PANTHER PTHR32196 18 182 2.3E-100 T 19-04-2016 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 PANTHER PTHR32196:SF40 210 324 2.3E-100 T 19-04-2016 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 PANTHER PTHR32196:SF40 374 421 2.3E-100 T 19-04-2016 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 PANTHER PTHR32196 374 421 2.3E-100 T 19-04-2016 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 348 1.2E-36 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 PANTHER PTHR32196 210 324 2.3E-100 T 19-04-2016 AMED_0858 ab6eb417cc67cc2c7dddb44d8f913846 421 PANTHER PTHR32196:SF40 18 182 2.3E-100 T 19-04-2016 AMED_9020 5db0f85d338005db6c27be189851da5b 376 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 264 352 8.0E-7 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_9020 5db0f85d338005db6c27be189851da5b 376 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 227 290 2.2E-15 T 19-04-2016 IPR017703 YgfZ/GcvT conserved site AMED_9020 5db0f85d338005db6c27be189851da5b 376 Gene3D G3DSA:3.30.70.1400 54 145 5.0E-8 T 19-04-2016 AMED_9020 5db0f85d338005db6c27be189851da5b 376 SUPERFAMILY SSF103025 25 279 2.67E-55 T 19-04-2016 AMED_9020 5db0f85d338005db6c27be189851da5b 376 Gene3D G3DSA:3.30.1360.120 152 233 9.6E-7 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_9020 5db0f85d338005db6c27be189851da5b 376 Gene3D G3DSA:3.30.1360.120 25 53 9.6E-7 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_9020 5db0f85d338005db6c27be189851da5b 376 PIRSF PIRSF006487 24 357 5.5E-21 T 19-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_9020 5db0f85d338005db6c27be189851da5b 376 Pfam PF01571 Aminomethyltransferase folate-binding domain 25 254 3.3E-27 T 19-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 SUPERFAMILY SSF50370 319 455 1.09E-35 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 Gene3D G3DSA:3.40.50.1820 49 279 3.7E-29 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 SMART SM00458 319 455 1.2E-8 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 Gene3D G3DSA:2.80.10.50 322 456 1.2E-26 T 19-04-2016 AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 Pfam PF02230 Phospholipase/Carboxylesterase 147 232 2.9E-6 T 19-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 SUPERFAMILY SSF53474 61 239 7.13E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 PANTHER PTHR38050 13 315 3.2E-113 T 19-04-2016 AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 PANTHER PTHR38050:SF1 13 315 3.2E-113 T 19-04-2016 AMED_3295 e94ef68a6fa784f79ae123f8173ea99e 457 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 358 442 1.1E-20 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7796 536629af6454419a93d8018b812959d2 476 SUPERFAMILY SSF51419 64 333 1.6E-71 T 19-04-2016 IPR029066 PLP-binding barrel AMED_7796 536629af6454419a93d8018b812959d2 476 PANTHER PTHR11482:SF5 37 475 3.5E-152 T 19-04-2016 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 443 465 7.4E-27 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 201 210 7.4E-27 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 355 373 7.4E-27 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01181 Diaminopimelate decarboxylase signature 112 129 7.4E-27 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7796 536629af6454419a93d8018b812959d2 476 Gene3D G3DSA:3.20.20.10 73 318 2.0E-83 T 19-04-2016 IPR029066 PLP-binding barrel AMED_7796 536629af6454419a93d8018b812959d2 476 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 45 476 8.3E-140 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7796 536629af6454419a93d8018b812959d2 476 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 94 112 - T 19-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 PANTHER PTHR11482 37 475 3.5E-152 T 19-04-2016 AMED_7796 536629af6454419a93d8018b812959d2 476 SUPERFAMILY SSF50621 310 475 7.33E-47 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 72 332 6.8E-59 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 340 452 7.2E-16 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 Gene3D G3DSA:2.40.37.10 319 475 1.1E-48 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 433 446 6.9E-17 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 322 341 6.9E-17 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 114 126 6.9E-17 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 229 242 6.9E-17 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 94 112 6.9E-17 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_7796 536629af6454419a93d8018b812959d2 476 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 53 476 38.655 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7796 536629af6454419a93d8018b812959d2 476 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 268 285 - T 19-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 SUPERFAMILY SSF51445 50 342 3.45E-104 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 PANTHER PTHR31490 38 342 4.7E-125 T 19-04-2016 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 Gene3D G3DSA:3.20.20.80 50 344 1.2E-106 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 SMART SM00637 377 459 1.5E-10 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 SUPERFAMILY SSF49384 374 459 4.12E-15 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 236 248 2.2E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 206 217 2.2E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 121 133 2.2E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 PRINTS PR00134 Glycosyl hydrolase family 10 signature 163 174 2.2E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 SMART SM00633 90 341 7.4E-119 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 Pfam PF00331 Glycosyl hydrolase family 10 49 339 1.1E-102 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4005 88ac395e0558e2b58ce8f9cb84775555 462 Gene3D G3DSA:2.60.40.290 375 459 3.7E-17 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 Gene3D G3DSA:2.60.420.10 682 753 6.4E-23 T 19-04-2016 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 Gene3D G3DSA:2.70.98.40 7 271 2.0E-75 T 19-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 17 270 4.2E-63 T 19-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 PANTHER PTHR11051 8 744 1.4E-198 T 19-04-2016 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 SUPERFAMILY SSF74650 7 272 1.6E-61 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 327 696 2.4E-136 T 19-04-2016 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 Gene3D G3DSA:1.50.10.10 321 681 1.1E-130 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 PIRSF PIRSF036289 2 760 6.3E-218 T 19-04-2016 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 SUPERFAMILY SSF48208 280 749 1.22E-123 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 700 749 2.3E-17 T 19-04-2016 IPR005194 Glycoside hydrolase family 65, C-terminal AMED_2978 fcfaca0073eeff0be80d5091f8ab6034 799 PANTHER PTHR11051:SF8 8 744 1.4E-198 T 19-04-2016 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 64 79 1.0E-12 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 210 222 1.0E-12 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 120 134 1.0E-12 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 74 79 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 PANTHER PTHR24276 7 259 2.7E-60 T 19-04-2016 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 SMART SM00020 41 261 6.8E-64 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 Gene3D G3DSA:2.40.10.10 72 128 1.0E-13 T 19-04-2016 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 Pfam PF00089 Trypsin 42 261 7.4E-50 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 Gene3D G3DSA:2.40.10.10 42 71 2.5E-13 T 19-04-2016 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 Gene3D G3DSA:2.40.10.10 129 260 3.0E-36 T 19-04-2016 AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 SUPERFAMILY SSF50494 14 258 1.44E-58 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_2561 ffa50604a01cb056049f769ecd93a0b1 268 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 211 222 - T 19-04-2016 IPR033116 Serine proteases, trypsin family, serine active site AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PANTHER PTHR10992 17 276 1.9E-53 T 19-04-2016 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 SUPERFAMILY SSF53474 6 275 1.31E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 Gene3D G3DSA:3.40.50.1820 5 275 1.2E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PANTHER PTHR10992:SF842 17 276 1.9E-53 T 19-04-2016 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 Pfam PF00561 alpha/beta hydrolase fold 26 151 1.9E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 251 273 9.2E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 217 233 9.2E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 111 124 9.2E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 51 66 9.2E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 31 49 9.2E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00412 Epoxide hydrolase signature 97 110 9.2E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 2.4E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 2.4E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8997 0edceb3dd1f11b17690c73f43894982c 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 2.4E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6374 3ed6c62d0e7fdb4924510201ee7c92b8 87 PANTHER PTHR38839:SF3 8 82 3.7E-22 T 19-04-2016 AMED_6374 3ed6c62d0e7fdb4924510201ee7c92b8 87 Pfam PF02467 Transcription factor WhiB 8 76 2.9E-24 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_6374 3ed6c62d0e7fdb4924510201ee7c92b8 87 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 2 83 14.518 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_6374 3ed6c62d0e7fdb4924510201ee7c92b8 87 PANTHER PTHR38839 8 82 3.7E-22 T 19-04-2016 AMED_3804 4bdb03cb7e90044fb55697805f8055b1 132 Pfam PF13586 Transposase DDE domain 38 115 2.4E-11 T 19-04-2016 IPR025668 Transposase DDE domain AMED_3804 4bdb03cb7e90044fb55697805f8055b1 132 PANTHER PTHR30007 3 126 1.8E-18 T 19-04-2016 AMED_3804 4bdb03cb7e90044fb55697805f8055b1 132 PANTHER PTHR30007:SF22 3 126 1.8E-18 T 19-04-2016 AMED_4524 4bdb03cb7e90044fb55697805f8055b1 132 Pfam PF13586 Transposase DDE domain 38 115 2.4E-11 T 19-04-2016 IPR025668 Transposase DDE domain AMED_4524 4bdb03cb7e90044fb55697805f8055b1 132 PANTHER PTHR30007 3 126 1.8E-18 T 19-04-2016 AMED_4524 4bdb03cb7e90044fb55697805f8055b1 132 PANTHER PTHR30007:SF22 3 126 1.8E-18 T 19-04-2016 AMED_5801 4bdb03cb7e90044fb55697805f8055b1 132 Pfam PF13586 Transposase DDE domain 38 115 2.4E-11 T 19-04-2016 IPR025668 Transposase DDE domain AMED_5801 4bdb03cb7e90044fb55697805f8055b1 132 PANTHER PTHR30007 3 126 1.8E-18 T 19-04-2016 AMED_5801 4bdb03cb7e90044fb55697805f8055b1 132 PANTHER PTHR30007:SF22 3 126 1.8E-18 T 19-04-2016 AMED_8587 7d22d340a707b3adaae60ee7f94e9b05 271 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 9 181 4.6E-25 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8587 7d22d340a707b3adaae60ee7f94e9b05 271 PANTHER PTHR30383:SF8 4 252 1.7E-74 T 19-04-2016 AMED_8587 7d22d340a707b3adaae60ee7f94e9b05 271 PANTHER PTHR30383 4 252 1.7E-74 T 19-04-2016 AMED_8587 7d22d340a707b3adaae60ee7f94e9b05 271 SUPERFAMILY SSF52266 6 190 4.5E-34 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8587 7d22d340a707b3adaae60ee7f94e9b05 271 Gene3D G3DSA:3.40.50.1110 7 190 6.7E-34 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 SUPERFAMILY SSF48452 298 363 1.12E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 SUPERFAMILY SSF48452 464 578 1.12E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 Gene3D G3DSA:1.25.40.10 254 494 6.2E-20 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 Gene3D G3DSA:1.25.40.10 511 680 5.1E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 Pfam PF13424 Tetratricopeptide repeat 296 362 3.3E-8 T 19-04-2016 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 Pfam PF07721 Tetratricopeptide repeat 469 493 0.032 T 19-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 SUPERFAMILY SSF48452 296 413 2.94E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 Pfam PF13432 Tetratricopeptide repeat 569 622 0.004 T 19-04-2016 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 SMART SM00028 292 325 190.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 SMART SM00028 332 365 2.5 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5790 94b2871e75f512cfe0b2c61e035eedeb 696 SMART SM00028 592 625 34.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3002 115692326532977fc38d10c089f867fa 324 PANTHER PTHR11409 4 317 6.0E-80 T 19-04-2016 AMED_3002 115692326532977fc38d10c089f867fa 324 SUPERFAMILY SSF51556 5 317 5.45E-61 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3002 115692326532977fc38d10c089f867fa 324 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 7 313 1.7E-73 T 19-04-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 AMED_3002 115692326532977fc38d10c089f867fa 324 Gene3D G3DSA:3.20.20.140 4 317 1.8E-77 T 19-04-2016 AMED_3002 115692326532977fc38d10c089f867fa 324 PANTHER PTHR11409:SF36 4 317 6.0E-80 T 19-04-2016 AMED_3002 115692326532977fc38d10c089f867fa 324 Pfam PF00962 Adenosine/AMP deaminase 7 311 6.6E-58 T 19-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 AMED_2880 02d382b8bb1d6fe1e18960214bed398e 194 Gene3D G3DSA:2.40.400.10 3 128 1.8E-16 T 19-04-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMED_2880 02d382b8bb1d6fe1e18960214bed398e 194 Pfam PF06314 Acetoacetate decarboxylase (ADC) 8 125 1.2E-13 T 19-04-2016 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMED_2880 02d382b8bb1d6fe1e18960214bed398e 194 SUPERFAMILY SSF160104 3 148 5.1E-19 T 19-04-2016 AMED_0251 7173f968113552f7e609a40ed5a0472b 74 Gene3D G3DSA:3.10.290.10 5 70 5.2E-27 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_0251 7173f968113552f7e609a40ed5a0472b 74 Pfam PF13275 S4 domain 7 67 1.2E-24 T 19-04-2016 AMED_0251 7173f968113552f7e609a40ed5a0472b 74 SUPERFAMILY SSF55174 5 64 5.23E-18 T 19-04-2016 AMED_0251 7173f968113552f7e609a40ed5a0472b 74 PANTHER PTHR32319 9 74 5.2E-18 T 19-04-2016 AMED_2603 18e764924bb505d76e933477a76315fa 272 SUPERFAMILY SSF56655 13 265 3.66E-66 T 19-04-2016 AMED_2603 18e764924bb505d76e933477a76315fa 272 Pfam PF00459 Inositol monophosphatase family 11 254 9.1E-58 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 90 103 - T 19-04-2016 IPR020583 Inositol monophosphatase, metal-binding site AMED_2603 18e764924bb505d76e933477a76315fa 272 Gene3D G3DSA:3.30.540.10 13 160 1.6E-42 T 19-04-2016 AMED_2603 18e764924bb505d76e933477a76315fa 272 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 219 233 - T 19-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 Gene3D G3DSA:3.40.190.80 161 266 1.9E-27 T 19-04-2016 AMED_2603 18e764924bb505d76e933477a76315fa 272 PANTHER PTHR20854 1 236 6.6E-69 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 216 240 1.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 185 206 1.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 1.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 1.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 139 162 1.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 90 106 1.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_2603 18e764924bb505d76e933477a76315fa 272 PANTHER PTHR20854:SF4 1 236 6.6E-69 T 19-04-2016 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 SUPERFAMILY SSF47413 15 73 2.06E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 Gene3D G3DSA:1.25.40.10 295 426 2.3E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 Gene3D G3DSA:1.25.40.10 160 294 4.9E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 Gene3D G3DSA:1.10.260.40 13 72 2.9E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 Pfam PF13560 Helix-turn-helix domain 15 72 1.9E-11 T 19-04-2016 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 SUPERFAMILY SSF48452 231 389 2.61E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 SMART SM00530 18 72 2.3E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_1040 477d577107c2cfe53a6e63a0a136699d 434 Pfam PF13424 Tetratricopeptide repeat 361 427 1.1E-9 T 19-04-2016 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 Pfam PF00186 Dihydrofolate reductase 2 128 1.3E-45 T 19-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 SUPERFAMILY SSF53597 2 151 1.54E-47 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 19-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PIRSF PIRSF000194 1 149 2.8E-48 T 19-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 40 51 2.3E-16 T 19-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 27 35 2.3E-16 T 19-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 89 103 2.3E-16 T 19-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PRINTS PR00070 Dihydrofolate reductase signature 13 23 2.3E-16 T 19-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PANTHER PTHR22778:SF16 2 151 7.8E-37 T 19-04-2016 AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 Gene3D G3DSA:3.40.430.10 2 151 2.5E-48 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_4108 9f5afb81327f623a5c9d996a53eef6bb 152 PANTHER PTHR22778 2 151 7.8E-37 T 19-04-2016 AMED_5410 d390fa94beaec31829a15bda357dd726 397 Pfam PF06722 Protein of unknown function (DUF1205) 178 280 2.5E-17 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5410 d390fa94beaec31829a15bda357dd726 397 Gene3D G3DSA:3.40.50.2000 231 372 3.0E-20 T 19-04-2016 AMED_5410 d390fa94beaec31829a15bda357dd726 397 SUPERFAMILY SSF53756 2 387 1.51E-67 T 19-04-2016 AMED_5410 d390fa94beaec31829a15bda357dd726 397 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 290 341 2.4E-5 T 19-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_5410 d390fa94beaec31829a15bda357dd726 397 Gene3D G3DSA:3.40.50.2000 2 230 5.6E-35 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 609 628 3.3E-39 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 175 189 3.3E-39 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 518 3.3E-39 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 645 3.3E-39 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 539 3.3E-39 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 337 351 3.3E-39 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF56784 335 355 7.01E-55 T 19-04-2016 IPR023214 HAD-like domain AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF56784 464 715 7.01E-55 T 19-04-2016 IPR023214 HAD-like domain AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81665 238 331 5.89E-107 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81665 659 886 5.89E-107 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81665 22 129 5.89E-107 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81653 128 235 1.27E-28 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SMART SM00831 18 91 7.0E-10 T 19-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 580 696 1.7E-28 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 98 354 9.1E-41 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 SUPERFAMILY SSF81660 344 511 2.62E-34 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:1.20.1110.10 71 123 9.2E-92 T 19-04-2016 IPR023298 P-type ATPase, transmembrane domain AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:1.20.1110.10 578 886 9.2E-92 T 19-04-2016 IPR023298 P-type ATPase, transmembrane domain AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00689 Cation transporting ATPase, C-terminus 695 882 9.9E-46 T 19-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:2.70.150.10 124 236 1.6E-36 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:2.70.150.10 35 70 1.6E-36 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00122 E1-E2 ATPase 96 328 1.8E-61 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00690 Cation transporter/ATPase, N-terminus 22 86 2.9E-13 T 19-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Gene3D G3DSA:3.40.1110.10 328 514 8.7E-40 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 Pfam PF00702 haloacid dehalogenase-like hydrolase 334 623 8.2E-23 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 467 485 1.2E-16 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 609 625 1.2E-16 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 641 666 1.2E-16 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PANTHER PTHR24093 782 887 2.2E-276 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PANTHER PTHR24093 21 747 2.2E-276 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 339 345 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PANTHER PTHR24093:SF268 782 887 2.2E-276 T 19-04-2016 AMED_5466 8fd15f49f83d52353f15855a00ff4a44 887 PANTHER PTHR24093:SF268 21 747 2.2E-276 T 19-04-2016 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 PANTHER PTHR11804:SF47 6 682 0.0 T 19-04-2016 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 Gene3D G3DSA:1.20.1050.40 15 146 1.9E-21 T 19-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 Pfam PF01432 Peptidase family M3 235 680 5.9E-120 T 19-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 SUPERFAMILY SSF55486 14 680 1.06E-169 T 19-04-2016 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 Gene3D G3DSA:3.40.390.10 369 506 7.9E-49 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 Gene3D G3DSA:1.10.1370.10 147 354 9.9E-111 T 19-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 Gene3D G3DSA:1.10.1370.10 507 681 9.9E-111 T 19-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 AMED_4638 1cbb8a67fa223caf78e12976e23e045d 684 PANTHER PTHR11804 6 682 0.0 T 19-04-2016 AMED_1300 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 SUPERFAMILY SSF51679 1 333 2.49E-71 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1300 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 PANTHER PTHR30137 1 342 1.6E-128 T 19-04-2016 AMED_1300 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 PANTHER PTHR30137:SF8 1 342 1.6E-128 T 19-04-2016 AMED_1300 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 Pfam PF00296 Luciferase-like monooxygenase 1 291 3.0E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1300 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 TIGRFAM TIGR04036 LLM_CE1758_fam: putative luciferase-like monooxygenase, FMN-dependent, CE1758 family 1 354 7.9E-218 T 19-04-2016 IPR023934 Luciferase-like monooxygenase, FMN-dependent, putative AMED_1300 4df8e7ccfc5cc3217ef0ddcd96d278c9 369 Gene3D G3DSA:3.20.20.30 1 339 1.6E-80 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3736 3637ce729b73d47463b61e74586e6937 172 PANTHER PTHR11911 30 62 5.9E-19 T 19-04-2016 AMED_3736 3637ce729b73d47463b61e74586e6937 172 PANTHER PTHR11911 84 166 5.9E-19 T 19-04-2016 AMED_3736 3637ce729b73d47463b61e74586e6937 172 Pfam PF00571 CBS domain 121 167 7.4E-4 T 19-04-2016 IPR000644 CBS domain AMED_3736 3637ce729b73d47463b61e74586e6937 172 Gene3D G3DSA:3.10.580.10 30 167 6.2E-10 T 19-04-2016 AMED_3736 3637ce729b73d47463b61e74586e6937 172 PANTHER PTHR11911:SF77 30 62 5.9E-19 T 19-04-2016 AMED_3736 3637ce729b73d47463b61e74586e6937 172 PANTHER PTHR11911:SF77 84 166 5.9E-19 T 19-04-2016 AMED_3736 3637ce729b73d47463b61e74586e6937 172 SUPERFAMILY SSF54631 30 167 2.82E-12 T 19-04-2016 AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 SUPERFAMILY SSF53383 2 362 1.67E-97 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 2 358 1.7E-101 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 PANTHER PTHR30244:SF16 1 364 3.6E-104 T 19-04-2016 AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 Gene3D G3DSA:3.90.1150.10 243 362 2.3E-25 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 PIRSF PIRSF000390 1 364 2.1E-99 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 Gene3D G3DSA:3.40.640.10 2 241 2.5E-72 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0200 402b25e35e3b22a352ad89fb64b43740 365 PANTHER PTHR30244 1 364 3.6E-104 T 19-04-2016 AMED_5915 49af614735267e5d54b816ed45a1aa8e 279 Pfam PF00589 Phage integrase family 73 248 9.3E-14 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_5915 49af614735267e5d54b816ed45a1aa8e 279 SUPERFAMILY SSF56349 3 256 1.8E-31 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_5915 49af614735267e5d54b816ed45a1aa8e 279 PANTHER PTHR22683 5 256 3.0E-33 T 19-04-2016 AMED_5915 49af614735267e5d54b816ed45a1aa8e 279 PANTHER PTHR22683:SF41 5 256 3.0E-33 T 19-04-2016 AMED_5915 49af614735267e5d54b816ed45a1aa8e 279 Gene3D G3DSA:1.10.443.10 62 264 1.8E-29 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 484 523 1.0E-7 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 434 3.3E-15 T 19-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF55957 440 518 1.83E-10 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.40.120.10 226 302 2.8E-19 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF53738 299 439 8.63E-27 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.30.310.50 459 529 8.2E-9 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF53738 207 306 2.75E-19 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 149 158 - T 19-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.40.120.10 303 441 1.0E-33 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 SUPERFAMILY SSF53738 45 214 9.03E-43 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 148 162 3.9E-6 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 291 306 3.9E-6 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 54 189 7.2E-40 T 19-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 PANTHER PTHR22573 26 543 1.0E-168 T 19-04-2016 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 PANTHER PTHR22573:SF54 26 543 1.0E-168 T 19-04-2016 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 220 306 6.4E-21 T 19-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_0906 a6d31ce73d6f68e4eb07e727dd5ee0bc 544 Gene3D G3DSA:3.40.120.10 40 214 4.0E-54 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMED_5766 0daf56ca245ed6d5700a102be2d873e7 134 PANTHER PTHR33570 14 132 3.7E-22 T 19-04-2016 AMED_5766 0daf56ca245ed6d5700a102be2d873e7 134 Pfam PF07883 Cupin domain 39 96 2.3E-13 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_5766 0daf56ca245ed6d5700a102be2d873e7 134 PANTHER PTHR33570:SF5 14 132 3.7E-22 T 19-04-2016 AMED_5766 0daf56ca245ed6d5700a102be2d873e7 134 Gene3D G3DSA:2.60.120.10 7 131 3.2E-29 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5766 0daf56ca245ed6d5700a102be2d873e7 134 SUPERFAMILY SSF51182 8 128 7.71E-27 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PANTHER PTHR11451 41 662 2.0E-250 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 SUPERFAMILY SSF55186 70 261 4.97E-53 T 19-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PRINTS PR01047 Threonyl-tRNA synthetase signature 489 517 1.3E-47 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PRINTS PR01047 Threonyl-tRNA synthetase signature 385 408 1.3E-47 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PRINTS PR01047 Threonyl-tRNA synthetase signature 352 380 1.3E-47 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PRINTS PR01047 Threonyl-tRNA synthetase signature 559 571 1.3E-47 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PRINTS PR01047 Threonyl-tRNA synthetase signature 532 545 1.3E-47 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Pfam PF03129 Anticodon binding domain 566 655 3.0E-18 T 19-04-2016 IPR004154 Anticodon-binding AMED_5327 473a7f39170e08dcc682af870bb6af07 675 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 78 654 1.2E-191 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 SMART SM00863 184 240 2.0E-21 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 PANTHER PTHR11451:SF5 41 662 2.0E-250 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Gene3D G3DSA:3.30.54.20 139 208 1.6E-9 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 72 659 32.664 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Gene3D G3DSA:3.30.930.10 263 555 7.7E-100 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 191 240 4.2E-14 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Gene3D G3DSA:3.40.50.800 556 661 8.6E-31 T 19-04-2016 IPR004154 Anticodon-binding AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Gene3D G3DSA:3.30.980.10 209 245 7.6E-42 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Gene3D G3DSA:3.30.980.10 72 135 7.6E-42 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 SUPERFAMILY SSF55681 264 550 8.16E-88 T 19-04-2016 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 347 554 5.1E-35 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_5327 473a7f39170e08dcc682af870bb6af07 675 SUPERFAMILY SSF52954 554 661 3.17E-28 T 19-04-2016 IPR004154 Anticodon-binding AMED_8966 48d689647e9eb0832a96449d9a7d6f2c 155 Pfam PF03928 Haem-degrading 22 149 2.3E-29 T 19-04-2016 IPR005624 Haem-degrading AMED_8966 48d689647e9eb0832a96449d9a7d6f2c 155 PANTHER PTHR28255 1 154 1.4E-45 T 19-04-2016 AMED_8966 48d689647e9eb0832a96449d9a7d6f2c 155 PIRSF PIRSF008757 1 155 4.7E-55 T 19-04-2016 IPR010371 Uncharacterised protein family UPF0303 AMED_8966 48d689647e9eb0832a96449d9a7d6f2c 155 PANTHER PTHR28255:SF1 1 154 1.4E-45 T 19-04-2016 AMED_8966 48d689647e9eb0832a96449d9a7d6f2c 155 SUPERFAMILY SSF143744 13 152 6.8E-24 T 19-04-2016 AMED_8966 48d689647e9eb0832a96449d9a7d6f2c 155 Hamap MF_00761 UPF0303 protein . 3 155 31.613 T 19-04-2016 IPR010371 Uncharacterised protein family UPF0303 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 Pfam PF00849 RNA pseudouridylate synthase 89 243 1.0E-31 T 19-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 Gene3D G3DSA:3.10.290.10 14 50 9.7E-5 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 PANTHER PTHR11079:SF73 8 307 4.3E-100 T 19-04-2016 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 13 305 5.4E-84 T 19-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 SUPERFAMILY SSF55120 78 305 6.88E-68 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 SMART SM00363 15 79 0.0076 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 19-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 PANTHER PTHR11079 8 307 4.3E-100 T 19-04-2016 AMED_2971 336eaf89dacab3a242cd75d75d494581 309 SUPERFAMILY SSF55174 14 65 4.94E-5 T 19-04-2016 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 Gene3D G3DSA:1.10.630.10 6 196 5.0E-15 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 Gene3D G3DSA:1.10.630.10 231 289 5.4E-9 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 234 243 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 83 99 1.9E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 100 115 1.9E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 232 241 1.9E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 41 52 1.9E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 PRINTS PR00359 B-class P450 signature 241 252 1.9E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0729 214ec121821a9e5b8423f37d618b520f 294 SUPERFAMILY SSF48264 8 289 2.1E-20 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 SMART SM00304 189 246 4.3E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 311 7.2E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 SMART SM00388 247 312 6.7E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 PANTHER PTHR24423 2 10 1.3E-50 T 19-04-2016 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 PANTHER PTHR24423 183 465 1.3E-50 T 19-04-2016 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 SUPERFAMILY SSF47384 231 311 2.75E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 Gene3D G3DSA:1.10.287.130 237 308 4.2E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 SUPERFAMILY SSF55874 302 464 2.36E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 1.3E-6 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 1.3E-6 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 SMART SM00387 356 465 7.5E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 Gene3D G3DSA:3.30.565.10 315 464 5.1E-31 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 463 2.7E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2365 66084c973c7482290c53fb01c94bb0a5 465 Pfam PF00672 HAMP domain 170 241 8.5E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6875 271da16aace3544636ec4b271e494d2f 271 Gene3D G3DSA:1.25.40.10 114 239 7.8E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6875 271da16aace3544636ec4b271e494d2f 271 SUPERFAMILY SSF46894 20 113 4.54E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6875 271da16aace3544636ec4b271e494d2f 271 SMART SM00862 35 113 8.2E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6875 271da16aace3544636ec4b271e494d2f 271 Gene3D G3DSA:1.10.10.10 40 113 8.2E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6875 271da16aace3544636ec4b271e494d2f 271 Pfam PF00486 Transcriptional regulatory protein, C terminal 39 113 6.9E-13 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6875 271da16aace3544636ec4b271e494d2f 271 PANTHER PTHR35807 9 267 4.7E-56 T 19-04-2016 AMED_6875 271da16aace3544636ec4b271e494d2f 271 SMART SM01043 120 265 8.5E-35 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6875 271da16aace3544636ec4b271e494d2f 271 SUPERFAMILY SSF48452 115 266 7.97E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6875 271da16aace3544636ec4b271e494d2f 271 Pfam PF03704 Bacterial transcriptional activator domain 121 264 4.1E-38 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_2162 66a4096c3172c745f1856680f204854a 203 Gene3D G3DSA:1.10.357.10 1 191 4.9E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2162 66a4096c3172c745f1856680f204854a 203 SUPERFAMILY SSF46689 2 87 4.64E-22 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2162 66a4096c3172c745f1856680f204854a 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.6E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2162 66a4096c3172c745f1856680f204854a 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.6E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2162 66a4096c3172c745f1856680f204854a 203 PANTHER PTHR30328:SF3 2 190 4.2E-36 T 19-04-2016 AMED_2162 66a4096c3172c745f1856680f204854a 203 SUPERFAMILY SSF48498 97 190 6.14E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2162 66a4096c3172c745f1856680f204854a 203 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_2162 66a4096c3172c745f1856680f204854a 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 6.8E-20 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2162 66a4096c3172c745f1856680f204854a 203 PANTHER PTHR30328 2 190 4.2E-36 T 19-04-2016 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 SUPERFAMILY SSF46894 128 199 2.48E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 SMART SM00421 137 194 2.7E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 2.6E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 2.6E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 2.6E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 PANTHER PTHR26402 53 200 1.4E-16 T 19-04-2016 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 Gene3D G3DSA:1.10.10.10 99 199 4.9E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 PANTHER PTHR26402:SF570 53 200 1.4E-16 T 19-04-2016 AMED_8115 2c2283dc46049a0333ce13e292f571d5 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 194 9.6E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6601 dba135a0012c268f3b0651e842aab33f 400 Pfam PF07730 Histidine kinase 199 266 1.1E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6601 dba135a0012c268f3b0651e842aab33f 400 PANTHER PTHR24421 173 395 2.8E-47 T 19-04-2016 AMED_6601 dba135a0012c268f3b0651e842aab33f 400 PANTHER PTHR24421:SF22 173 395 2.8E-47 T 19-04-2016 AMED_6601 dba135a0012c268f3b0651e842aab33f 400 SUPERFAMILY SSF55874 286 381 4.4E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1748 2aeed84847e8360cda7bceb58209ea52 176 PANTHER PTHR13061 1 170 3.5E-44 T 19-04-2016 AMED_1748 2aeed84847e8360cda7bceb58209ea52 176 Gene3D G3DSA:2.160.10.10 4 144 5.9E-39 T 19-04-2016 AMED_1748 2aeed84847e8360cda7bceb58209ea52 176 SUPERFAMILY SSF51161 1 152 2.63E-39 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_1748 2aeed84847e8360cda7bceb58209ea52 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 121 2.1E-5 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_1748 2aeed84847e8360cda7bceb58209ea52 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 45 6.4E-6 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_6880 9966a1b02e819503d9ddbea2faed1a6c 206 SUPERFAMILY SSF55821 1 203 1.16E-58 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_6880 9966a1b02e819503d9ddbea2faed1a6c 206 PANTHER PTHR17490 1 205 1.8E-78 T 19-04-2016 AMED_6880 9966a1b02e819503d9ddbea2faed1a6c 206 Gene3D G3DSA:3.90.870.10 2 202 4.2E-60 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_6880 9966a1b02e819503d9ddbea2faed1a6c 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 8 200 5.6E-52 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMED_6880 9966a1b02e819503d9ddbea2faed1a6c 206 Pfam PF01300 Telomere recombination 22 198 1.9E-41 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMED_6880 9966a1b02e819503d9ddbea2faed1a6c 206 PANTHER PTHR17490:SF7 1 205 1.8E-78 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 50 3.8E-14 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 67 80 3.8E-14 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 235 245 3.8E-14 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PRINTS PR00987 Glutamyl-tRNA synthetase signature 251 259 3.8E-14 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:3.40.50.620 35 103 1.6E-32 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:3.40.50.620 237 286 1.6E-32 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:1.10.1160.10 294 373 2.4E-6 T 19-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 SUPERFAMILY SSF52374 35 326 2.28E-64 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 35 325 7.8E-55 T 19-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 SUPERFAMILY SSF48163 358 549 1.06E-12 T 19-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451 230 287 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451 303 369 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451 33 213 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451 389 413 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451:SF41 230 287 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451:SF41 303 369 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451:SF41 33 213 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 PANTHER PTHR11451:SF41 389 413 3.1E-51 T 19-04-2016 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:1.10.10.350 515 550 3.4E-8 T 19-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_4135 0f7ec9418c9b5b95eae680a4431f3108 553 Gene3D G3DSA:3.90.800.10 109 231 1.3E-23 T 19-04-2016 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 PANTHER PTHR11014:SF63 7 389 7.5E-77 T 19-04-2016 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 SUPERFAMILY SSF55031 184 294 2.69E-28 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2303 3016640af0346383d5bbeb33693a5b27 390 Pfam PF07687 Peptidase dimerisation domain 186 279 8.4E-16 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2303 3016640af0346383d5bbeb33693a5b27 390 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 20 365 9.1E-65 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 Gene3D G3DSA:3.30.70.360 182 298 7.2E-35 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2303 3016640af0346383d5bbeb33693a5b27 390 PANTHER PTHR11014 7 389 7.5E-77 T 19-04-2016 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 SUPERFAMILY SSF53187 8 198 1.71E-42 T 19-04-2016 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 SUPERFAMILY SSF53187 299 381 1.71E-42 T 19-04-2016 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 Pfam PF01546 Peptidase family M20/M25/M40 74 367 2.4E-18 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 Gene3D G3DSA:3.40.630.10 6 179 3.5E-48 T 19-04-2016 AMED_2303 3016640af0346383d5bbeb33693a5b27 390 Gene3D G3DSA:3.40.630.10 299 385 3.5E-48 T 19-04-2016 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 PANTHER PTHR30419 1 290 1.7E-78 T 19-04-2016 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.8E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.8E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.8E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 Gene3D G3DSA:3.40.190.10 87 177 1.4E-14 T 19-04-2016 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-21 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 SUPERFAMILY SSF53850 89 268 1.12E-30 T 19-04-2016 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 SUPERFAMILY SSF46785 1 111 3.63E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 Gene3D G3DSA:3.40.190.10 178 250 2.2E-21 T 19-04-2016 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 Pfam PF03466 LysR substrate binding domain 88 273 1.0E-35 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 PANTHER PTHR30419:SF6 1 290 1.7E-78 T 19-04-2016 AMED_1437 2859c0696d27f5ea8d508854b98aeae0 300 Gene3D G3DSA:1.10.10.10 1 84 3.3E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8847 75c2aa1b565da67e6dccd94fa0e1d1f3 151 SUPERFAMILY SSF55298 2 150 2.2E-54 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_8847 75c2aa1b565da67e6dccd94fa0e1d1f3 151 PANTHER PTHR11803 5 151 2.6E-45 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_8847 75c2aa1b565da67e6dccd94fa0e1d1f3 151 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 150 3.3E-29 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_8847 75c2aa1b565da67e6dccd94fa0e1d1f3 151 Gene3D G3DSA:3.30.1330.40 3 150 1.0E-65 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_8847 75c2aa1b565da67e6dccd94fa0e1d1f3 151 PANTHER PTHR11803:SF2 5 151 2.6E-45 T 19-04-2016 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 46 6.4E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 SUPERFAMILY SSF47413 1 56 1.52E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 Gene3D G3DSA:3.40.50.2300 165 331 5.2E-51 T 19-04-2016 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 PANTHER PTHR30146 1 332 2.1E-96 T 19-04-2016 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 SUPERFAMILY SSF53822 59 332 5.5E-68 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 Pfam PF13377 Periplasmic binding protein-like domain 165 329 4.6E-36 T 19-04-2016 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 Gene3D G3DSA:3.40.50.2300 59 164 8.6E-30 T 19-04-2016 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 Gene3D G3DSA:1.10.260.40 1 58 1.1E-20 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5772 39d0ee9a7b2261dc06b4fa85ba03652a 334 SMART SM00354 1 69 6.7E-23 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_0407 6d62b75e521caadd6b8daf29023f6873 186 Gene3D G3DSA:1.10.3300.10 5 182 1.1E-42 T 19-04-2016 IPR023286 ABATE domain AMED_0407 6d62b75e521caadd6b8daf29023f6873 186 SUPERFAMILY SSF160904 5 181 2.75E-38 T 19-04-2016 AMED_0407 6d62b75e521caadd6b8daf29023f6873 186 Pfam PF11706 CGNR zinc finger 140 181 1.1E-15 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_0407 6d62b75e521caadd6b8daf29023f6873 186 PANTHER PTHR35525:SF3 4 181 1.2E-26 T 19-04-2016 AMED_0407 6d62b75e521caadd6b8daf29023f6873 186 PANTHER PTHR35525 4 181 1.2E-26 T 19-04-2016 AMED_0407 6d62b75e521caadd6b8daf29023f6873 186 Pfam PF07336 Putative stress-induced transcription regulator 11 136 4.9E-18 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_3053 bef1b7bcf1f5702a03fdc42a8d62061e 287 Gene3D G3DSA:3.30.750.24 163 255 3.1E-15 T 19-04-2016 IPR002645 STAS domain AMED_3053 bef1b7bcf1f5702a03fdc42a8d62061e 287 Pfam PF01740 STAS domain 171 256 2.0E-10 T 19-04-2016 IPR002645 STAS domain AMED_3053 bef1b7bcf1f5702a03fdc42a8d62061e 287 SUPERFAMILY SSF52091 162 272 1.1E-19 T 19-04-2016 IPR002645 STAS domain AMED_3053 bef1b7bcf1f5702a03fdc42a8d62061e 287 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 13 110 1.0E-15 T 19-04-2016 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain AMED_3053 bef1b7bcf1f5702a03fdc42a8d62061e 287 PANTHER PTHR33745:SF1 46 284 7.2E-58 T 19-04-2016 AMED_3053 bef1b7bcf1f5702a03fdc42a8d62061e 287 PANTHER PTHR33745 46 284 7.2E-58 T 19-04-2016 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 PANTHER PTHR11926:SF77 1 371 2.0E-13 T 19-04-2016 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 Pfam PF06722 Protein of unknown function (DUF1205) 179 273 6.3E-25 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 Gene3D G3DSA:3.40.50.2000 1 147 1.2E-28 T 19-04-2016 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 Gene3D G3DSA:3.40.50.2000 169 216 1.5E-7 T 19-04-2016 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 SUPERFAMILY SSF53756 1 387 5.34E-84 T 19-04-2016 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 Gene3D G3DSA:3.40.50.2000 217 367 7.8E-30 T 19-04-2016 AMED_5418 36d99c674936bd7412569ae6dadac08c 392 PANTHER PTHR11926 1 371 2.0E-13 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 PANTHER PTHR30146 1 331 1.8E-68 T 19-04-2016 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 SUPERFAMILY SSF47413 2 58 2.12E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 SUPERFAMILY SSF53822 57 317 1.97E-37 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3070 8833a270be3402e746f11ef91bfc8623 337 Pfam PF13377 Periplasmic binding protein-like domain 168 331 1.1E-22 T 19-04-2016 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 Gene3D G3DSA:1.10.260.40 1 59 6.0E-24 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 Gene3D G3DSA:3.40.50.2300 177 310 3.4E-23 T 19-04-2016 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 SMART SM00354 1 70 4.2E-24 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 4.8E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3070 8833a270be3402e746f11ef91bfc8623 337 Gene3D G3DSA:3.40.50.2300 60 176 1.1E-29 T 19-04-2016 AMED_6145 18e6210836bfd758716ddf881a9703b8 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 1.2E-10 T 19-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMED_6145 18e6210836bfd758716ddf881a9703b8 257 Gene3D G3DSA:3.40.50.300 3 252 1.7E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6145 18e6210836bfd758716ddf881a9703b8 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6145 18e6210836bfd758716ddf881a9703b8 257 PANTHER PTHR24220:SF358 6 104 1.3E-121 T 19-04-2016 AMED_6145 18e6210836bfd758716ddf881a9703b8 257 Pfam PF00005 ABC transporter 20 180 6.1E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6145 18e6210836bfd758716ddf881a9703b8 257 SUPERFAMILY SSF52540 3 251 9.32E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6145 18e6210836bfd758716ddf881a9703b8 257 PANTHER PTHR24220 120 257 1.3E-121 T 19-04-2016 AMED_6145 18e6210836bfd758716ddf881a9703b8 257 PANTHER PTHR24220 6 104 1.3E-121 T 19-04-2016 AMED_6145 18e6210836bfd758716ddf881a9703b8 257 SMART SM00382 29 228 3.9E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6145 18e6210836bfd758716ddf881a9703b8 257 PANTHER PTHR24220:SF358 120 257 1.3E-121 T 19-04-2016 AMED_1717 f7ef12a2c8b5b780ce347614652abcd1 325 SUPERFAMILY SSF53098 7 320 7.59E-64 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 Pfam PF00089 Trypsin 280 364 1.2E-8 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 SUPERFAMILY SSF50494 196 366 1.31E-34 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:3.30.300.50 112 181 9.3E-19 T 19-04-2016 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:3.30.300.50 29 108 7.9E-29 T 19-04-2016 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:2.40.10.10 271 360 4.2E-30 T 19-04-2016 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 Gene3D G3DSA:2.40.10.10 191 268 1.8E-23 T 19-04-2016 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 Pfam PF02983 Alpha-lytic protease prodomain 113 172 2.2E-11 T 19-04-2016 IPR004236 Peptidase S1A, alpha-lytic prodomain GO:0005576|GO:0006508|GO:0008236 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 PIRSF PIRSF001134 1 375 4.6E-120 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 314 337 1.9E-38 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 338 352 1.9E-38 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 295 312 1.9E-38 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 213 227 1.9E-38 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_5138 40783eb1d85d43cf7bd8e193016a9da0 375 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 274 294 1.9E-38 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1351 757457f1541c5901aff415796a96f914 268 SUPERFAMILY SSF50494 58 252 5.56E-21 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_1351 757457f1541c5901aff415796a96f914 268 Pfam PF13365 Trypsin-like peptidase domain 95 236 2.2E-7 T 19-04-2016 AMED_1351 757457f1541c5901aff415796a96f914 268 Gene3D G3DSA:2.40.10.10 83 159 6.9E-10 T 19-04-2016 AMED_1351 757457f1541c5901aff415796a96f914 268 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 104 109 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_6026 774188c445ffed213628c9f180ad8452 603 TIGRFAM TIGR00634 recN: DNA repair protein RecN 11 583 3.1E-173 T 19-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMED_6026 774188c445ffed213628c9f180ad8452 603 PANTHER PTHR11059 12 592 1.7E-142 T 19-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMED_6026 774188c445ffed213628c9f180ad8452 603 PIRSF PIRSF003128 11 588 4.2E-154 T 19-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMED_6026 774188c445ffed213628c9f180ad8452 603 Gene3D G3DSA:3.40.50.300 12 220 8.2E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6026 774188c445ffed213628c9f180ad8452 603 Pfam PF02463 RecF/RecN/SMC N terminal domain 24 539 1.3E-12 T 19-04-2016 IPR003395 RecF/RecN/SMC, N-terminal AMED_6026 774188c445ffed213628c9f180ad8452 603 SUPERFAMILY SSF52540 16 60 4.41E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6026 774188c445ffed213628c9f180ad8452 603 SUPERFAMILY SSF52540 332 541 4.41E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6026 774188c445ffed213628c9f180ad8452 603 Gene3D G3DSA:3.40.50.300 384 421 7.6E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6026 774188c445ffed213628c9f180ad8452 603 Gene3D G3DSA:3.40.50.300 463 541 7.6E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6026 774188c445ffed213628c9f180ad8452 603 SUPERFAMILY SSF52540 6 231 9.84E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0478 0eaed8b2bb1de658fe5cc14b75fa5f67 518 SUPERFAMILY SSF56524 226 415 1.7E-55 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_0478 0eaed8b2bb1de658fe5cc14b75fa5f67 518 PANTHER PTHR19372 228 501 2.3E-57 T 19-04-2016 AMED_0478 0eaed8b2bb1de658fe5cc14b75fa5f67 518 Gene3D G3DSA:3.90.420.10 210 413 2.4E-52 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_0478 0eaed8b2bb1de658fe5cc14b75fa5f67 518 Pfam PF00174 Oxidoreductase molybdopterin binding domain 244 392 3.6E-36 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_0478 0eaed8b2bb1de658fe5cc14b75fa5f67 518 Gene3D G3DSA:2.60.40.650 414 515 2.1E-20 T 19-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 AMED_0478 0eaed8b2bb1de658fe5cc14b75fa5f67 518 SUPERFAMILY SSF81296 408 515 1.61E-22 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 Gene3D G3DSA:2.40.110.10 123 222 1.4E-39 T 19-04-2016 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 PANTHER PTHR10909 1 383 2.0E-142 T 19-04-2016 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 SUPERFAMILY SSF56645 3 247 2.88E-79 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 PANTHER PTHR10909:SF325 1 383 2.0E-142 T 19-04-2016 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 Gene3D G3DSA:1.10.540.10 3 120 4.6E-36 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 Gene3D G3DSA:1.20.140.10 223 380 3.5E-46 T 19-04-2016 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 SUPERFAMILY SSF47203 236 380 1.51E-37 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 379 3.0E-37 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 221 4.5E-26 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_5310 a48920737f44f02874a6e07e3cec25ae 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 119 1.1E-32 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:1.25.40.10 749 941 1.4E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:1.25.40.10 195 230 1.4E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 SMART SM01043 96 237 1.7E-41 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF46894 6 92 3.12E-9 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF52540 251 524 5.94E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 PRINTS PR00364 Disease resistance protein signature 458 472 5.2E-11 T 19-04-2016 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 PRINTS PR00364 Disease resistance protein signature 359 373 5.2E-11 T 19-04-2016 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 PRINTS PR00364 Disease resistance protein signature 282 297 5.2E-11 T 19-04-2016 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Pfam PF00931 NB-ARC domain 278 528 1.1E-5 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF48452 747 955 1.18E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:3.40.50.300 267 374 4.4E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 SUPERFAMILY SSF48452 94 254 7.59E-29 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 87 2.7E-5 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Gene3D G3DSA:1.10.10.10 15 93 4.5E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 PANTHER PTHR22845:SF4 138 587 9.1E-66 T 19-04-2016 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 PANTHER PTHR22845 138 587 9.1E-66 T 19-04-2016 AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 Pfam PF03704 Bacterial transcriptional activator domain 96 237 2.8E-35 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3938 b9b87740db1748d411e851dc1d485ee3 968 SMART SM00862 16 92 5.8E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 SMART SM00861 8 173 2.6E-22 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 SUPERFAMILY SSF52518 8 167 5.4E-36 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 Gene3D G3DSA:3.40.50.920 180 301 6.4E-8 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 PANTHER PTHR11624:SF2 10 303 5.8E-28 T 19-04-2016 AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 SUPERFAMILY SSF52922 178 302 9.58E-12 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 PANTHER PTHR11624 10 303 5.8E-28 T 19-04-2016 IPR033247 Transketolase family AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 Pfam PF02779 Transketolase, pyrimidine binding domain 9 168 2.2E-28 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_0652 5503c0dfbe14b5ce15624936c4a2bb0f 303 Gene3D G3DSA:3.40.50.970 7 170 3.5E-30 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 PANTHER PTHR10909 3 337 4.7E-75 T 19-04-2016 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 Gene3D G3DSA:1.10.540.10 3 115 1.2E-15 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 PANTHER PTHR10909:SF302 3 337 4.7E-75 T 19-04-2016 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 SUPERFAMILY SSF47203 218 343 1.8E-31 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 3 115 4.6E-15 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 Gene3D G3DSA:1.20.140.10 217 338 2.7E-29 T 19-04-2016 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 SUPERFAMILY SSF56645 3 181 6.48E-26 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3389 694a31f0003decb5e3963d67a79e7c3a 345 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 222 337 5.2E-23 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_9059 4a890c7e562b33fbee143407eeb4c987 154 PANTHER PTHR30543 17 152 4.1E-24 T 19-04-2016 AMED_9059 4a890c7e562b33fbee143407eeb4c987 154 Pfam PF03358 NADPH-dependent FMN reductase 15 118 7.7E-20 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_9059 4a890c7e562b33fbee143407eeb4c987 154 PANTHER PTHR30543:SF6 17 152 4.1E-24 T 19-04-2016 AMED_9059 4a890c7e562b33fbee143407eeb4c987 154 SUPERFAMILY SSF52218 10 150 7.09E-26 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_9059 4a890c7e562b33fbee143407eeb4c987 154 Gene3D G3DSA:3.40.50.360 14 151 6.7E-29 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_9205 c87134f165fb44ee2100aeb3d19a8f92 160 Gene3D G3DSA:3.30.530.20 12 158 2.0E-12 T 19-04-2016 IPR023393 START-like domain AMED_9205 c87134f165fb44ee2100aeb3d19a8f92 160 SUPERFAMILY SSF55961 11 158 5.3E-18 T 19-04-2016 AMED_9205 c87134f165fb44ee2100aeb3d19a8f92 160 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 10 157 1.9E-15 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_3854 58eadd4b48a590a6f9cd4a277cb4a4e9 173 Pfam PF07681 DoxX 11 95 6.6E-17 T 19-04-2016 IPR032808 DoxX family AMED_3854 58eadd4b48a590a6f9cd4a277cb4a4e9 173 PANTHER PTHR33452 5 135 4.1E-26 T 19-04-2016 AMED_3854 58eadd4b48a590a6f9cd4a277cb4a4e9 173 PANTHER PTHR33452:SF1 5 135 4.1E-26 T 19-04-2016 AMED_6268 93dca5051f97e5a32fd72145d230f1f1 424 PANTHER PTHR34351 3 397 1.2E-50 T 19-04-2016 AMED_6268 93dca5051f97e5a32fd72145d230f1f1 424 PANTHER PTHR34351:SF1 3 397 1.2E-50 T 19-04-2016 AMED_6268 93dca5051f97e5a32fd72145d230f1f1 424 Pfam PF01882 Protein of unknown function DUF58 201 280 1.9E-18 T 19-04-2016 IPR002881 Domain of unknown function DUF58 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 SMART SM00895 85 208 4.0E-8 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 Gene3D G3DSA:1.20.120.530 78 213 1.8E-22 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 PANTHER PTHR11751 15 101 2.1E-24 T 19-04-2016 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.0E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.0E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 SUPERFAMILY SSF46785 9 98 3.78E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 SMART SM00345 17 75 3.4E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 SUPERFAMILY SSF48008 81 213 2.88E-21 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 Gene3D G3DSA:1.10.10.10 7 76 7.4E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 PANTHER PTHR11751:SF436 15 101 2.1E-24 T 19-04-2016 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 9.8E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3392 6aed8129dea8265bfddb5c4b3a15010f 218 Pfam PF07729 FCD domain 89 206 4.0E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 Gene3D G3DSA:3.20.20.140 164 268 1.0E-35 T 19-04-2016 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 Gene3D G3DSA:3.20.20.140 4 94 1.0E-35 T 19-04-2016 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 PANTHER PTHR30007 4 266 1.4E-51 T 19-04-2016 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 Pfam PF02811 PHP domain 7 139 2.5E-6 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 SMART SM00481 6 70 6.7E-16 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 SUPERFAMILY SSF89550 172 268 1.29E-42 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 SUPERFAMILY SSF89550 2 89 1.29E-42 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_1102 503b7d70a7e622f2a7a0e0790636ac8a 290 PANTHER PTHR30007:SF4 4 266 1.4E-51 T 19-04-2016 AMED_6452 95f2ea7af2972d76ce3bc7c0343e8e65 367 PANTHER PTHR30383:SF3 6 361 4.4E-65 T 19-04-2016 AMED_6452 95f2ea7af2972d76ce3bc7c0343e8e65 367 PANTHER PTHR30383 6 361 4.4E-65 T 19-04-2016 AMED_6452 95f2ea7af2972d76ce3bc7c0343e8e65 367 Gene3D G3DSA:3.40.50.1110 161 361 1.2E-24 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6452 95f2ea7af2972d76ce3bc7c0343e8e65 367 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 163 355 2.5E-19 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6452 95f2ea7af2972d76ce3bc7c0343e8e65 367 SUPERFAMILY SSF52266 161 361 3.21E-35 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 SUPERFAMILY SSF56235 7 253 3.09E-45 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 Pfam PF13522 Glutamine amidotransferase domain 58 195 2.3E-9 T 19-04-2016 AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 PANTHER PTHR11907:SF0 1 441 4.9E-170 T 19-04-2016 AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 5 441 6.4E-125 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 SUPERFAMILY SSF53271 236 442 6.42E-55 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 Gene3D G3DSA:3.60.20.10 1 303 1.7E-69 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 PANTHER PTHR11907 1 441 4.9E-170 T 19-04-2016 AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 Gene3D G3DSA:3.40.50.2020 322 394 1.9E-8 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_4748 610fe8d48b18f14482ca3c46f0910f13 443 PIRSF PIRSF000485 1 443 4.3E-135 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMED_6297 6b8b4b63e84c6abc78deb947fd8f20b7 457 PANTHER PTHR11785:SF24 5 448 3.4E-181 T 19-04-2016 AMED_6297 6b8b4b63e84c6abc78deb947fd8f20b7 457 PIRSF PIRSF006060 2 453 3.8E-63 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6297 6b8b4b63e84c6abc78deb947fd8f20b7 457 PANTHER PTHR11785 5 448 3.4E-181 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6297 6b8b4b63e84c6abc78deb947fd8f20b7 457 Pfam PF00324 Amino acid permease 15 446 1.1E-97 T 19-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AMED_8962 d5b0dbca562745ba077900df69a7aac0 180 TIGRFAM TIGR03941 tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein 29 175 6.8E-53 T 19-04-2016 IPR023869 tRNA adenosine deaminase-associated protein, putative AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 PANTHER PTHR30290:SF14 2 429 4.5E-42 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 PANTHER PTHR30290:SF14 447 567 4.5E-42 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 Gene3D G3DSA:3.90.76.10 65 197 4.9E-14 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 Gene3D G3DSA:3.10.105.10 314 543 4.8E-19 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 SUPERFAMILY SSF53850 42 571 1.81E-58 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 PANTHER PTHR30290 2 429 4.5E-42 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 PANTHER PTHR30290 447 567 4.5E-42 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 Gene3D G3DSA:3.40.190.10 198 313 7.9E-13 T 19-04-2016 AMED_8029 c9a01c1790497008af22a613e2c49d9b 578 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 95 427 1.4E-38 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_7899 6f6cc0ade9d8be4aa6509086c172bd6e 375 SMART SM00382 101 294 1.0E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7899 6f6cc0ade9d8be4aa6509086c172bd6e 375 Gene3D G3DSA:3.40.50.300 92 308 2.7E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7899 6f6cc0ade9d8be4aa6509086c172bd6e 375 SUPERFAMILY SSF52540 93 330 2.07E-25 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7899 6f6cc0ade9d8be4aa6509086c172bd6e 375 Pfam PF07728 AAA domain (dynein-related subfamily) 105 282 9.3E-9 T 19-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMED_3561 327ebf03fd6bdad8b5c03ffcb04e17c5 134 Pfam PF00545 ribonuclease 71 132 3.0E-7 T 19-04-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 AMED_3561 327ebf03fd6bdad8b5c03ffcb04e17c5 134 SUPERFAMILY SSF53933 60 134 1.5E-10 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_3561 327ebf03fd6bdad8b5c03ffcb04e17c5 134 Gene3D G3DSA:3.10.450.30 55 134 1.6E-13 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_7798 5a14cd8abb1714c4b6818ca9f92754e2 272 Pfam PF11303 Protein of unknown function (DUF3105) 82 209 4.4E-41 T 19-04-2016 IPR021454 Protein of unknown function DUF3105 AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 Gene3D G3DSA:3.40.50.300 163 351 2.3E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 PANTHER PTHR30258 25 372 2.3E-101 T 19-04-2016 AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 PANTHER PTHR30258:SF12 25 372 2.3E-101 T 19-04-2016 AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 TIGRFAM TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase 6 349 1.2E-143 T 19-04-2016 IPR022399 Helicase/secretion neighbourhood ATPase AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 Gene3D G3DSA:3.30.450.90 55 154 2.0E-19 T 19-04-2016 AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 Pfam PF00437 Type II/IV secretion system protein 57 337 5.1E-67 T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMED_8805 2775552ad6f9eadf2eb40a1a4cc9deee 383 SUPERFAMILY SSF52540 47 343 5.52E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7227 c7f0e2fee3fd9e4f1673a3813d3e9060 77 PANTHER PTHR10909:SF305 1 67 3.5E-17 T 19-04-2016 AMED_7227 c7f0e2fee3fd9e4f1673a3813d3e9060 77 Gene3D G3DSA:1.20.140.10 1 69 1.5E-21 T 19-04-2016 AMED_7227 c7f0e2fee3fd9e4f1673a3813d3e9060 77 SUPERFAMILY SSF47203 1 71 9.18E-20 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7227 c7f0e2fee3fd9e4f1673a3813d3e9060 77 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 2 69 5.1E-18 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7227 c7f0e2fee3fd9e4f1673a3813d3e9060 77 PANTHER PTHR10909 1 67 3.5E-17 T 19-04-2016 AMED_4912 bfa732503e5808df018793bf0ed0be91 263 Gene3D G3DSA:3.10.129.10 56 101 2.9E-5 T 19-04-2016 IPR029069 HotDog domain AMED_4912 bfa732503e5808df018793bf0ed0be91 263 SUPERFAMILY SSF54637 133 258 9.22E-9 T 19-04-2016 IPR029069 HotDog domain AMED_4912 bfa732503e5808df018793bf0ed0be91 263 Pfam PF13622 Thioesterase-like superfamily 21 255 1.9E-37 T 19-04-2016 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.4E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.4E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 1.1E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 63 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 SUPERFAMILY SSF46689 7 91 8.75E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 Gene3D G3DSA:1.10.357.10 6 196 2.1E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 PANTHER PTHR30055:SF14 3 193 3.3E-30 T 19-04-2016 AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 SUPERFAMILY SSF48498 88 187 2.33E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4714 e4e7db6198b5d691f91ecda8cc5f439a 201 PANTHER PTHR30055 3 193 3.3E-30 T 19-04-2016 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 Gene3D G3DSA:1.20.200.10 140 403 6.9E-88 T 19-04-2016 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 SUPERFAMILY SSF48557 3 459 2.04E-151 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 PANTHER PTHR11444:SF25 4 459 5.9E-245 T 19-04-2016 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 7.8E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 7.8E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 7.8E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 PRINTS PR00149 Fumarate lyase superfamily signature 135 153 7.8E-28 T 19-04-2016 IPR000362 Fumarate lyase family AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 Pfam PF00206 Lyase 12 342 1.6E-104 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 Pfam PF10415 Fumarase C C-terminus 408 460 1.1E-19 T 19-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 Gene3D G3DSA:1.10.40.30 408 461 8.6E-20 T 19-04-2016 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 4 461 1.3E-208 T 19-04-2016 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 PANTHER PTHR11444 4 459 5.9E-245 T 19-04-2016 IPR000362 Fumarate lyase family AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMED_2149 21857f8a06176a4e003c1e05d9df3728 463 Gene3D G3DSA:1.10.275.10 2 139 2.6E-57 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PANTHER PTHR32092:SF5 1 421 1.6E-137 T 19-04-2016 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 Gene3D G3DSA:3.40.50.720 1 160 6.8E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 132 162 - T 19-04-2016 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 187 402 1.1E-45 T 19-04-2016 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 132 149 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 89 102 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 103 123 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 183 195 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 68 84 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PRINTS PR00732 Glycosyl hydrolase family 4 signature 157 168 1.8E-36 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 SUPERFAMILY SSF51735 1 160 4.1E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 SUPERFAMILY SSF56327 161 423 3.21E-64 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 Pfam PF02056 Family 4 glycosyl hydrolase 25 177 2.4E-39 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 Gene3D G3DSA:3.90.110.10 161 422 1.2E-89 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_1342 11af66302bf91a78e9b76571acbc9bf7 426 PANTHER PTHR32092 1 421 1.6E-137 T 19-04-2016 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 PIRSF PIRSF000498 1 205 9.5E-69 T 19-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 SUPERFAMILY SSF63380 2 87 3.66E-24 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 PANTHER PTHR21098 2 208 3.5E-92 T 19-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 2 193 2.7E-59 T 19-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 SUPERFAMILY SSF63380 92 194 8.08E-30 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 Gene3D G3DSA:2.40.30.20 5 106 1.8E-32 T 19-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 Gene3D G3DSA:2.40.30.20 114 199 8.8E-28 T 19-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 Pfam PF00677 Lumazine binding domain 3 86 1.1E-21 T 19-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2772 b069e7c03504c601ec1be66399b4adfb 209 Pfam PF00677 Lumazine binding domain 99 180 2.6E-21 T 19-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 Pfam PF03600 Citrate transporter 14 369 1.4E-51 T 19-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PANTHER PTHR10283:SF67 1 429 1.4E-144 T 19-04-2016 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 3.9E-12 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 3.9E-12 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 365 390 3.9E-12 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 398 422 3.9E-12 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PRINTS PR00758 Arsenical pump membrane protein signature 219 244 3.9E-12 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_5749 282e6d003258630cc0666d9f88a5cf73 430 PANTHER PTHR10283 1 429 1.4E-144 T 19-04-2016 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 Gene3D G3DSA:1.10.357.10 2 177 1.9E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 PANTHER PTHR30055:SF11 1 101 2.4E-17 T 19-04-2016 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_5610 dc5109ebe132de0af2a28786d2094185 187 PANTHER PTHR30055 1 101 2.4E-17 T 19-04-2016 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 3.2E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5610 dc5109ebe132de0af2a28786d2094185 187 SUPERFAMILY SSF46689 4 75 6.67E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 Pfam PF00350 Dynamin family 48 211 3.3E-20 T 19-04-2016 IPR022812 Dynamin superfamily AMED_5171 52036183702bd3dfb8adf5e896df1287 613 PANTHER PTHR11649:SF36 140 243 1.5E-12 T 19-04-2016 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 PANTHER PTHR11649:SF36 23 87 1.5E-12 T 19-04-2016 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 PANTHER PTHR11649:SF36 581 590 1.5E-12 T 19-04-2016 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 SUPERFAMILY SSF52540 29 243 2.31E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5171 52036183702bd3dfb8adf5e896df1287 613 PANTHER PTHR11649 140 243 1.5E-12 T 19-04-2016 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 PANTHER PTHR11649 23 87 1.5E-12 T 19-04-2016 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 PANTHER PTHR11649 581 590 1.5E-12 T 19-04-2016 AMED_5171 52036183702bd3dfb8adf5e896df1287 613 Gene3D G3DSA:3.40.50.300 41 57 8.5E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5171 52036183702bd3dfb8adf5e896df1287 613 Gene3D G3DSA:3.40.50.300 114 152 8.5E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5171 52036183702bd3dfb8adf5e896df1287 613 Gene3D G3DSA:3.40.50.300 58 94 7.8E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5171 52036183702bd3dfb8adf5e896df1287 613 Gene3D G3DSA:3.40.50.300 153 266 7.8E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7010 035a0721308c7d10b77fd319a04c273b 208 PANTHER PTHR36503:SF1 1 114 1.9E-29 T 19-04-2016 AMED_7010 035a0721308c7d10b77fd319a04c273b 208 Gene3D G3DSA:3.10.180.10 2 31 5.5E-5 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7010 035a0721308c7d10b77fd319a04c273b 208 Gene3D G3DSA:3.10.180.10 116 180 2.5E-5 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7010 035a0721308c7d10b77fd319a04c273b 208 Gene3D G3DSA:3.10.180.10 37 100 3.1E-13 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7010 035a0721308c7d10b77fd319a04c273b 208 SUPERFAMILY SSF54593 3 101 1.13E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7010 035a0721308c7d10b77fd319a04c273b 208 PANTHER PTHR36503 1 114 1.9E-29 T 19-04-2016 AMED_7010 035a0721308c7d10b77fd319a04c273b 208 SUPERFAMILY SSF54593 111 204 6.44E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4988 5b720e841216cf8cea33a87d6d93a9a3 157 Pfam PF02577 Bifunctional nuclease 6 127 5.7E-44 T 19-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 AMED_4988 5b720e841216cf8cea33a87d6d93a9a3 157 SUPERFAMILY SSF103256 1 136 5.49E-47 T 19-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 AMED_4988 5b720e841216cf8cea33a87d6d93a9a3 157 PANTHER PTHR15160 1 153 2.5E-31 T 19-04-2016 AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 PANTHER PTHR24220 6 228 1.5E-114 T 19-04-2016 AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 Gene3D G3DSA:3.40.50.300 2 224 1.1E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 SMART SM00382 33 220 8.9E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 PANTHER PTHR24220:SF578 6 228 1.5E-114 T 19-04-2016 AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 SUPERFAMILY SSF52540 4 225 3.22E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 Pfam PF00005 ABC transporter 24 172 2.0E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0490 055e32262cb3ab0718ad16ed59f9b832 234 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5701 53a63d386634592aeefb8c043146698f 496 SUPERFAMILY SSF51905 1 238 5.61E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 SUPERFAMILY SSF51905 143 181 3.48E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 SUPERFAMILY SSF51905 289 402 3.48E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 45 63 6.7E-14 T 19-04-2016 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 181 196 6.7E-14 T 19-04-2016 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 69 84 6.7E-14 T 19-04-2016 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 1 13 6.7E-14 T 19-04-2016 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 PRINTS PR00370 Flavin-containing monooxygenase (FMO) signature 122 138 6.7E-14 T 19-04-2016 IPR000960 Flavin monooxygenase FMO GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 Pfam PF00743 Flavin-binding monooxygenase-like 2 226 1.6E-30 T 19-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 Gene3D G3DSA:3.50.50.60 137 206 5.6E-11 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 Gene3D G3DSA:3.50.50.60 1 136 1.9E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 Gene3D G3DSA:3.50.50.60 336 468 1.9E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5701 53a63d386634592aeefb8c043146698f 496 PANTHER PTHR23023 1 458 1.3E-99 T 19-04-2016 AMED_5701 53a63d386634592aeefb8c043146698f 496 PANTHER PTHR23023:SF130 1 458 1.3E-99 T 19-04-2016 AMED_7248 0a828f5a43f90977925d9047b882ba71 323 Pfam PF00753 Metallo-beta-lactamase superfamily 85 205 9.4E-20 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7248 0a828f5a43f90977925d9047b882ba71 323 PANTHER PTHR11935 44 205 1.5E-20 T 19-04-2016 AMED_7248 0a828f5a43f90977925d9047b882ba71 323 SMART SM00849 84 265 1.0E-20 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7248 0a828f5a43f90977925d9047b882ba71 323 SUPERFAMILY SSF56281 66 279 6.36E-38 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7248 0a828f5a43f90977925d9047b882ba71 323 Gene3D G3DSA:3.60.15.10 61 228 2.7E-36 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5756 e51bbc2e72045df35ef5c199609ab8df 162 SUPERFAMILY SSF54665 4 62 1.19E-13 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_5756 e51bbc2e72045df35ef5c199609ab8df 162 PANTHER PTHR11908:SF71 1 63 2.5E-14 T 19-04-2016 AMED_5756 e51bbc2e72045df35ef5c199609ab8df 162 Gene3D G3DSA:3.90.1170.50 3 62 7.4E-14 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_5756 e51bbc2e72045df35ef5c199609ab8df 162 PANTHER PTHR11908 1 63 2.5E-14 T 19-04-2016 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 PANTHER PTHR11811:SF28 1 293 9.6E-146 T 19-04-2016 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 Gene3D G3DSA:3.40.50.720 3 164 3.1E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 SMART SM01350 163 296 1.3E-4 T 19-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 152 180 7.7E-17 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 227 254 7.7E-17 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 2 25 7.7E-17 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 163 273 1.3E-22 T 19-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 PANTHER PTHR11811 1 293 9.6E-146 T 19-04-2016 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 Gene3D G3DSA:1.10.1040.10 165 277 3.8E-34 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 231 243 - T 19-04-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 144 6.9E-36 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 3 293 7.7E-107 T 19-04-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 SUPERFAMILY SSF51735 3 145 4.06E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0003 2230fa2e04fc8b8c56d21d20295123f8 296 SUPERFAMILY SSF48179 161 294 2.31E-39 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 PANTHER PTHR11265 1 315 2.0E-127 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 SUPERFAMILY SSF53335 6 116 1.02E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 SUPERFAMILY SSF53335 218 313 1.02E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 PANTHER PTHR11265:SF0 1 315 2.0E-127 T 19-04-2016 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 SUPERFAMILY SSF81799 117 218 4.05E-33 T 19-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 312 3.2E-90 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Pfam PF01795 MraW methylase family 5 312 6.3E-109 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 PIRSF PIRSF004486 1 314 5.4E-96 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Gene3D G3DSA:1.10.150.170 115 220 8.5E-35 T 19-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Gene3D G3DSA:3.40.50.150 221 314 1.1E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Gene3D G3DSA:3.40.50.150 6 113 1.1E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6260 dc502ade7bb18bfa27dbf9e0a9299e5f 317 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 6 313 36.226 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PANTHER PTHR23023 13 315 2.2E-113 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 19 341 2.3E-54 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PANTHER PTHR23023:SF53 367 518 2.2E-113 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PANTHER PTHR23023:SF53 13 315 2.2E-113 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 Gene3D G3DSA:3.50.50.60 202 366 2.0E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PANTHER PTHR23023 367 518 2.2E-113 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 Gene3D G3DSA:3.50.50.60 16 201 4.5E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 18 37 1.5E-9 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 196 214 1.5E-9 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 322 344 1.5E-9 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.5E-9 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 17 39 9.9E-5 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 9.9E-5 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 196 221 9.9E-5 T 19-04-2016 AMED_0892 0b2f18557b099148d51db80e7767372e 523 SUPERFAMILY SSF51905 16 60 2.59E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0892 0b2f18557b099148d51db80e7767372e 523 SUPERFAMILY SSF51905 106 360 2.59E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 8 257 1.1E-90 T 19-04-2016 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185|UniPathway: UPA00157 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 Gene3D G3DSA:3.40.50.1820 5 259 2.7E-67 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1862 772df853dc1ef935d9044091cc6f5706 260 SUPERFAMILY SSF53474 4 258 6.79E-72 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1862 772df853dc1ef935d9044091cc6f5706 260 PANTHER PTHR10992:SF771 6 259 1.2E-54 T 19-04-2016 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 PANTHER PTHR10992 6 259 1.2E-54 T 19-04-2016 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 Pfam PF00561 alpha/beta hydrolase fold 19 245 1.6E-25 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 3.1E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 3.1E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 3.1E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1862 772df853dc1ef935d9044091cc6f5706 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 202 216 3.1E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2899 be7b9ba15a6d73d65f0ecf39d214f41b 152 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 100 2.5E-17 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMED_2899 be7b9ba15a6d73d65f0ecf39d214f41b 152 PANTHER PTHR11079 9 146 1.1E-45 T 19-04-2016 AMED_2899 be7b9ba15a6d73d65f0ecf39d214f41b 152 PANTHER PTHR11079:SF63 9 146 1.1E-45 T 19-04-2016 AMED_2899 be7b9ba15a6d73d65f0ecf39d214f41b 152 Gene3D G3DSA:3.40.140.10 7 135 8.7E-30 T 19-04-2016 AMED_2899 be7b9ba15a6d73d65f0ecf39d214f41b 152 SUPERFAMILY SSF53927 6 143 2.38E-33 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 SMART SM00862 141 228 7.0E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 SMART SM00448 1 111 1.9E-38 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 PANTHER PTHR26402 1 231 3.0E-78 T 19-04-2016 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 228 2.3E-20 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 Gene3D G3DSA:3.40.50.2300 2 118 7.5E-40 T 19-04-2016 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 PANTHER PTHR26402:SF578 1 231 3.0E-78 T 19-04-2016 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 Gene3D G3DSA:1.10.10.10 120 231 2.4E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 Pfam PF00072 Response regulator receiver domain 2 112 6.4E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 SUPERFAMILY SSF46894 120 229 1.19E-22 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0980 8d541d7e17aba27ae54d4621c29d98c9 231 SUPERFAMILY SSF52172 2 119 6.26E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.30.450.40 134 243 2.5E-5 T 19-04-2016 IPR029016 GAF domain-like AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 SUPERFAMILY SSF81606 595 786 2.88E-7 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 PANTHER PTHR21021:SF19 24 37 1.6E-37 T 19-04-2016 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.30.450.20 419 531 6.0E-15 T 19-04-2016 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 608 790 1.1E-42 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF03861 ANTAR domain 47 95 6.1E-10 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 PANTHER PTHR21021 555 799 1.6E-37 T 19-04-2016 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 PANTHER PTHR21021 24 37 1.6E-37 T 19-04-2016 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 PANTHER PTHR21021:SF19 555 799 1.6E-37 T 19-04-2016 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 SUPERFAMILY SSF55785 437 531 3.84E-10 T 19-04-2016 IPR000014 PAS domain AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF08447 PAS fold 439 525 1.7E-7 T 19-04-2016 IPR013655 PAS fold-3 GO:0005515 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 SUPERFAMILY SSF55781 136 274 4.71E-8 T 19-04-2016 IPR029016 GAF domain-like AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 SMART SM00331 581 790 2.3E-31 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 SMART SM01012 40 95 9.9E-10 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Pfam PF13185 GAF domain 136 273 1.4E-6 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:3.30.450.20 317 408 9.1E-5 T 19-04-2016 AMED_4527 2aa80faed368ac1870029d6ea50aac38 800 Gene3D G3DSA:1.10.10.10 50 96 9.1E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7888 181ae42e5de61a6584dffd8f8416a521 156 Pfam PF12587 Protein of unknown function (DUF3761) 86 156 7.3E-23 T 19-04-2016 IPR022236 Protein of unknown function DUF3761 AMED_8311 74937ae5bd0bbe2892a496102661064b 301 Pfam PF00483 Nucleotidyl transferase 13 275 9.0E-26 T 19-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 AMED_8311 74937ae5bd0bbe2892a496102661064b 301 PANTHER PTHR22572 12 278 2.1E-102 T 19-04-2016 AMED_8311 74937ae5bd0bbe2892a496102661064b 301 SUPERFAMILY SSF53448 11 290 1.94E-55 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8311 74937ae5bd0bbe2892a496102661064b 301 PANTHER PTHR22572:SF80 12 278 2.1E-102 T 19-04-2016 AMED_8311 74937ae5bd0bbe2892a496102661064b 301 Gene3D G3DSA:3.90.550.10 9 283 2.6E-58 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2706 f2856555449e5e5efeb788d385d815cc 402 Pfam PF00067 Cytochrome P450 37 395 7.5E-26 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 128 144 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 145 160 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 82 93 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 321 336 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 195 217 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 293 320 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 342 351 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 276 287 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PRINTS PR00359 B-class P450 signature 351 362 4.7E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PANTHER PTHR24286:SF42 78 402 2.0E-87 T 19-04-2016 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 PANTHER PTHR24286 78 402 2.0E-87 T 19-04-2016 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 Gene3D G3DSA:1.10.630.10 12 401 7.7E-112 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_2706 f2856555449e5e5efeb788d385d815cc 402 SUPERFAMILY SSF48264 8 401 2.1E-92 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 Gene3D G3DSA:3.40.50.720 44 100 2.8E-5 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 SUPERFAMILY SSF52283 26 119 3.02E-7 T 19-04-2016 AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 97 266 9.5E-43 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 PANTHER PTHR10996 34 299 2.4E-84 T 19-04-2016 AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 PANTHER PTHR10996:SF160 34 299 2.4E-84 T 19-04-2016 AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 SUPERFAMILY SSF51735 91 267 1.77E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2073 03551a10b729da4d51e8c3dfe1b1d79d 299 Gene3D G3DSA:3.40.50.720 101 267 3.5E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 3 370 2.0E-108 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 PANTHER PTHR21599 3 372 2.3E-106 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 SUPERFAMILY SSF110738 3 370 2.09E-106 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 Pfam PF02595 Glycerate kinase family 4 370 9.7E-117 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 Gene3D G3DSA:3.90.1510.10 43 272 8.5E-70 T 19-04-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 PIRSF PIRSF006078 2 373 1.9E-114 T 19-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AMED_1849 1bc8f4c76e84d4068ed6823c32c733f1 373 PANTHER PTHR21599:SF0 3 372 2.3E-106 T 19-04-2016 AMED_4397 167787d1e357633b41ddc0ecddd0faaa 327 SUPERFAMILY SSF53822 38 309 2.86E-70 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4397 167787d1e357633b41ddc0ecddd0faaa 327 Gene3D G3DSA:3.40.50.2300 39 152 8.8E-25 T 19-04-2016 AMED_4397 167787d1e357633b41ddc0ecddd0faaa 327 PANTHER PTHR32196 67 293 1.2E-86 T 19-04-2016 AMED_4397 167787d1e357633b41ddc0ecddd0faaa 327 Pfam PF13407 Periplasmic binding protein domain 45 300 1.6E-47 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_4397 167787d1e357633b41ddc0ecddd0faaa 327 Gene3D G3DSA:3.40.50.2300 153 310 2.3E-45 T 19-04-2016 AMED_4397 167787d1e357633b41ddc0ecddd0faaa 327 PANTHER PTHR32196:SF20 67 293 1.2E-86 T 19-04-2016 AMED_4228 42c212867f24670ffde217c28ab092b3 158 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 75 150 9.5E-26 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4228 42c212867f24670ffde217c28ab092b3 158 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 75 150 1.0E-26 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4228 42c212867f24670ffde217c28ab092b3 158 Gene3D G3DSA:1.10.10.10 73 151 1.5E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4228 42c212867f24670ffde217c28ab092b3 158 SUPERFAMILY SSF53155 1 75 6.87E-13 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_4228 42c212867f24670ffde217c28ab092b3 158 PANTHER PTHR10815 1 150 3.3E-37 T 19-04-2016 AMED_4228 42c212867f24670ffde217c28ab092b3 158 SUPERFAMILY SSF46767 73 151 3.4E-24 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4897 a8fda639ba2cb9b7dff600a026f7b5d2 172 PANTHER PTHR22769 37 171 1.0E-12 T 19-04-2016 AMED_4897 a8fda639ba2cb9b7dff600a026f7b5d2 172 Pfam PF00293 NUDIX domain 34 148 3.4E-18 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_4897 a8fda639ba2cb9b7dff600a026f7b5d2 172 SUPERFAMILY SSF55811 6 170 4.06E-31 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_4897 a8fda639ba2cb9b7dff600a026f7b5d2 172 PIRSF PIRSF017340 1 171 1.0E-53 T 19-04-2016 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 AMED_4897 a8fda639ba2cb9b7dff600a026f7b5d2 172 ProSitePatterns PS00893 Nudix box signature. 70 91 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_4897 a8fda639ba2cb9b7dff600a026f7b5d2 172 Gene3D G3DSA:3.90.79.10 4 170 1.1E-48 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 Pfam PF00005 ABC transporter 42 186 2.1E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 SMART SM00382 50 233 1.4E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 PANTHER PTHR24220:SF522 295 301 4.1E-94 T 19-04-2016 AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 PANTHER PTHR24220:SF522 27 249 4.1E-94 T 19-04-2016 AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 PANTHER PTHR24220 295 301 4.1E-94 T 19-04-2016 AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 SUPERFAMILY SSF52540 25 250 2.97E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 Gene3D G3DSA:3.40.50.300 27 249 7.5E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8038 d4639c71fdb8f6c3aa02de9cc87d7c48 325 PANTHER PTHR24220 27 249 4.1E-94 T 19-04-2016 AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 Gene3D G3DSA:3.40.50.720 1 106 1.0E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 218 234 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 279 2.0E-57 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 Gene3D G3DSA:3.40.50.720 107 280 1.8E-64 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 PANTHER PTHR10996:SF127 1 307 1.4E-118 T 19-04-2016 AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 SUPERFAMILY SSF51735 101 279 1.01E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 PANTHER PTHR10996 1 307 1.4E-118 T 19-04-2016 AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 19 305 2.9E-11 T 19-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AMED_2722 fce0c78b3734c2f773a91a798ce41755 311 SUPERFAMILY SSF52283 1 119 6.59E-21 T 19-04-2016 AMED_4010 2fdff83937393bc262fe0187ac04adf4 252 Gene3D G3DSA:3.90.550.10 7 240 3.8E-32 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4010 2fdff83937393bc262fe0187ac04adf4 252 PANTHER PTHR22916 4 227 3.2E-28 T 19-04-2016 AMED_4010 2fdff83937393bc262fe0187ac04adf4 252 PANTHER PTHR22916:SF23 4 227 3.2E-28 T 19-04-2016 AMED_4010 2fdff83937393bc262fe0187ac04adf4 252 SUPERFAMILY SSF53448 4 241 3.19E-37 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4010 2fdff83937393bc262fe0187ac04adf4 252 Pfam PF00535 Glycosyl transferase family 2 7 179 6.7E-21 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_2975 23996265f7d1421fd93461b07c3c7bd1 346 PANTHER PTHR30011:SF4 1 326 1.0E-123 T 19-04-2016 AMED_2975 23996265f7d1421fd93461b07c3c7bd1 346 Gene3D G3DSA:3.20.20.30 1 343 1.3E-65 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2975 23996265f7d1421fd93461b07c3c7bd1 346 SUPERFAMILY SSF51679 1 343 6.67E-62 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2975 23996265f7d1421fd93461b07c3c7bd1 346 PANTHER PTHR30011 1 326 1.0E-123 T 19-04-2016 AMED_2975 23996265f7d1421fd93461b07c3c7bd1 346 TIGRFAM TIGR03559 F420_Rv3520c: probable F420-dependent oxidoreductase, Rv3520c family 2 324 4.0E-158 T 19-04-2016 IPR019951 F420-dependent oxidoreductase-predicted, Rv3520c KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_2975 23996265f7d1421fd93461b07c3c7bd1 346 Pfam PF00296 Luciferase-like monooxygenase 6 320 1.3E-71 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2007 5a6deb6f7fc852f173b5f05a18c9ae2c 361 Gene3D G3DSA:3.40.710.10 5 344 2.3E-71 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2007 5a6deb6f7fc852f173b5f05a18c9ae2c 361 SUPERFAMILY SSF56601 8 345 5.18E-67 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2007 5a6deb6f7fc852f173b5f05a18c9ae2c 361 PANTHER PTHR10566 91 192 1.7E-39 T 19-04-2016 AMED_2007 5a6deb6f7fc852f173b5f05a18c9ae2c 361 Pfam PF00144 Beta-lactamase 27 340 2.0E-55 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_2007 5a6deb6f7fc852f173b5f05a18c9ae2c 361 PANTHER PTHR10566:SF77 91 192 1.7E-39 T 19-04-2016 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 Pfam PF03176 MMPL family 437 692 3.8E-40 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 Pfam PF03176 MMPL family 45 358 2.9E-70 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 SUPERFAMILY SSF82866 456 692 7.85E-31 T 19-04-2016 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 PANTHER PTHR33406:SF5 1 721 5.7E-208 T 19-04-2016 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 Gene3D G3DSA:1.20.1640.10 473 698 1.6E-34 T 19-04-2016 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 Gene3D G3DSA:1.20.1640.10 152 332 6.7E-31 T 19-04-2016 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 PANTHER PTHR33406 1 721 5.7E-208 T 19-04-2016 AMED_2258 fea24b7007b135fbacf1c7eab70d9d24 728 SUPERFAMILY SSF82866 142 331 3.4E-30 T 19-04-2016 AMED_5700 3ca35d6c6a8114c985094b8236c6d7f7 147 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 36 113 0.003 T 19-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 AMED_5700 3ca35d6c6a8114c985094b8236c6d7f7 147 Gene3D G3DSA:2.60.120.10 15 145 4.1E-30 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5700 3ca35d6c6a8114c985094b8236c6d7f7 147 Pfam PF07883 Cupin domain 41 109 4.6E-18 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_5700 3ca35d6c6a8114c985094b8236c6d7f7 147 PANTHER PTHR36440:SF1 6 119 3.8E-19 T 19-04-2016 AMED_5700 3ca35d6c6a8114c985094b8236c6d7f7 147 PANTHER PTHR36440 6 119 3.8E-19 T 19-04-2016 AMED_5700 3ca35d6c6a8114c985094b8236c6d7f7 147 SUPERFAMILY SSF51182 24 122 4.46E-25 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_0469 3174305da8d453f647b482d7b2ab8c7b 347 PANTHER PTHR22753:SF11 79 344 6.2E-130 T 19-04-2016 AMED_0469 3174305da8d453f647b482d7b2ab8c7b 347 Gene3D G3DSA:3.40.1130.10 125 258 2.4E-4 T 19-04-2016 AMED_0469 3174305da8d453f647b482d7b2ab8c7b 347 Pfam PF01553 Acyltransferase 120 249 2.7E-15 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_0469 3174305da8d453f647b482d7b2ab8c7b 347 PANTHER PTHR22753 79 344 6.2E-130 T 19-04-2016 AMED_0469 3174305da8d453f647b482d7b2ab8c7b 347 SUPERFAMILY SSF69593 84 335 1.18E-29 T 19-04-2016 AMED_0469 3174305da8d453f647b482d7b2ab8c7b 347 SMART SM00563 134 252 1.0E-15 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_8638 f29a611aa2a8582b305faed6cf15e7f6 397 Pfam PF08245 Mur ligase middle domain 47 251 1.2E-13 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_8638 f29a611aa2a8582b305faed6cf15e7f6 397 Pfam PF08353 Domain of unknown function (DUF1727) 289 387 4.0E-22 T 19-04-2016 IPR013564 Domain of unknown function DUF1727 AMED_8638 f29a611aa2a8582b305faed6cf15e7f6 397 Gene3D G3DSA:3.40.1190.10 33 269 1.8E-42 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_8638 f29a611aa2a8582b305faed6cf15e7f6 397 SUPERFAMILY SSF53623 32 267 1.7E-33 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_8638 f29a611aa2a8582b305faed6cf15e7f6 397 PANTHER PTHR23135:SF7 25 394 8.6E-101 T 19-04-2016 AMED_8638 f29a611aa2a8582b305faed6cf15e7f6 397 PANTHER PTHR23135 25 394 8.6E-101 T 19-04-2016 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 Gene3D G3DSA:3.40.50.2300 4 155 5.4E-28 T 19-04-2016 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 9.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 9.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 9.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 SMART SM00448 5 124 4.7E-12 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 SUPERFAMILY SSF52172 5 165 9.29E-22 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 Pfam PF00072 Response regulator receiver domain 8 112 1.4E-15 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 Gene3D G3DSA:1.10.10.10 156 217 8.9E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 SUPERFAMILY SSF46894 149 200 8.5E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 199 5.4E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 PANTHER PTHR26402 5 212 3.7E-88 T 19-04-2016 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 SMART SM00421 151 213 1.2E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0045 1dfbd36808117decf86cfda00ed71f85 219 PANTHER PTHR26402:SF582 5 212 3.7E-88 T 19-04-2016 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 Gene3D G3DSA:3.40.47.10 14 173 2.6E-59 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 119 195 1.3E-26 T 19-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 SUPERFAMILY SSF53901 16 321 7.16E-63 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 323 9.3E-28 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 Gene3D G3DSA:3.40.47.10 174 322 2.3E-42 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 PANTHER PTHR18919:SF109 39 327 4.2E-100 T 19-04-2016 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 14 326 58.355 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 16 322 1.4E-99 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_2101 812ff0d0b145e7431417ef595ad1929e 327 PANTHER PTHR18919 39 327 4.2E-100 T 19-04-2016 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 Gene3D G3DSA:3.30.43.10 3 74 3.0E-18 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 Pfam PF02913 FAD linked oxidases, C-terminal domain 238 471 3.0E-47 T 19-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 Gene3D G3DSA:1.10.1060.10 450 607 4.3E-13 T 19-04-2016 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 Pfam PF01565 FAD binding domain 24 161 4.5E-39 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 SUPERFAMILY SSF56176 3 238 1.59E-52 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 PANTHER PTHR11748 205 523 2.3E-117 T 19-04-2016 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 Gene3D G3DSA:3.30.465.10 79 238 3.1E-30 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 SUPERFAMILY SSF46548 496 594 4.18E-9 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 PANTHER PTHR11748:SF35 205 523 2.3E-117 T 19-04-2016 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 PANTHER PTHR11748:SF35 2 167 2.3E-117 T 19-04-2016 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 PANTHER PTHR11748 2 167 2.3E-117 T 19-04-2016 AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 Pfam PF13183 4Fe-4S dicluster domain 511 589 4.1E-10 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 575 586 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_7023 c79ab2e2eed829d3daf03045aada2a67 911 SUPERFAMILY SSF55103 241 475 7.52E-51 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 SUPERFAMILY SSF103473 26 405 3.27E-31 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 Gene3D G3DSA:1.20.1250.20 27 204 2.0E-10 T 19-04-2016 AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 Gene3D G3DSA:1.20.1250.20 240 403 6.2E-13 T 19-04-2016 AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 PANTHER PTHR23513 9 405 3.7E-42 T 19-04-2016 AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 Pfam PF05977 Transmembrane secretion effector 23 398 9.0E-12 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 PRINTS PR01988 Putative bacilysin exporter bacE signature 157 178 8.5E-5 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 PRINTS PR01988 Putative bacilysin exporter bacE signature 184 201 8.5E-5 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_7684 f9f6f5f5a472a55cca1e401dcf00270e 415 PRINTS PR01988 Putative bacilysin exporter bacE signature 31 53 8.5E-5 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 Gene3D G3DSA:1.10.10.10 32 159 3.2E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 Pfam PF12802 MarR family 52 111 4.8E-11 T 19-04-2016 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 PANTHER PTHR33164 1 166 1.3E-56 T 19-04-2016 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 SUPERFAMILY SSF46785 30 161 6.34E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 1.1E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 1.1E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 1.1E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 SMART SM00347 46 147 9.3E-22 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 PANTHER PTHR33164:SF7 1 166 1.3E-56 T 19-04-2016 AMED_1599 0fa060a17b61dda379a9fcf71381b4d1 166 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 PANTHER PTHR26402 3 209 1.3E-83 T 19-04-2016 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 Pfam PF00072 Response regulator receiver domain 5 117 8.9E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 SMART SM00448 3 116 1.8E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 Gene3D G3DSA:1.10.10.10 122 210 3.2E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 SUPERFAMILY SSF46894 136 211 7.82E-22 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 SUPERFAMILY SSF52172 3 133 6.4E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 SMART SM00421 148 205 4.4E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 PANTHER PTHR26402:SF151 3 209 1.3E-83 T 19-04-2016 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 9.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 9.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 9.0E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 Gene3D G3DSA:3.40.50.2300 3 121 1.8E-37 T 19-04-2016 AMED_5403 fe2f11b0dea633347f28ff3f2c17040a 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 1.0E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 Gene3D G3DSA:1.10.357.10 9 174 7.0E-26 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 SUPERFAMILY SSF48498 76 180 3.74E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 1.1E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 SUPERFAMILY SSF46689 5 69 3.79E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 PANTHER PTHR30328:SF4 1 180 7.4E-26 T 19-04-2016 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5649 9f05ed0ea7f014be5bc416730105d025 195 PANTHER PTHR30328 1 180 7.4E-26 T 19-04-2016 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 PANTHER PTHR18968:SF9 8 596 3.9E-177 T 19-04-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 11 599 1.0E-246 T 19-04-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 203 4.4E-36 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 Gene3D G3DSA:3.40.50.1220 219 409 8.0E-48 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 227 358 4.4E-29 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 SUPERFAMILY SSF52467 188 389 2.58E-43 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 443 579 1.2E-24 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 SUPERFAMILY SSF52518 400 588 4.98E-35 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 SUPERFAMILY SSF52518 7 218 2.33E-32 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 PANTHER PTHR18968 8 596 3.9E-177 T 19-04-2016 AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 Gene3D G3DSA:3.40.50.970 8 218 1.6E-53 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1881 1d099d170939003b1a205e6d53e2ba62 620 Gene3D G3DSA:3.40.50.970 410 589 2.4E-33 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7892 ca130386c58b987076429b571d9f04a9 777 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 6 772 1.2E-144 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_7892 ca130386c58b987076429b571d9f04a9 777 SUPERFAMILY SSF48208 301 737 2.04E-18 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_7892 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:1.20.1050.60 385 476 4.9E-22 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:1.20.1610.10 491 643 6.1E-40 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:2.70.98.10 30 359 1.0E-84 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_7892 ca130386c58b987076429b571d9f04a9 777 PANTHER PTHR12143:SF22 281 473 5.3E-106 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 PANTHER PTHR12143:SF22 7 265 5.3E-106 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 PANTHER PTHR12143:SF22 493 775 5.3E-106 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 Gene3D G3DSA:3.30.2080.10 644 776 3.9E-43 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 Pfam PF07971 Glycosyl hydrolase family 92 276 769 1.7E-145 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_7892 ca130386c58b987076429b571d9f04a9 777 PANTHER PTHR12143 281 473 5.3E-106 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 PANTHER PTHR12143 7 265 5.3E-106 T 19-04-2016 AMED_7892 ca130386c58b987076429b571d9f04a9 777 PANTHER PTHR12143 493 775 5.3E-106 T 19-04-2016 AMED_6782 bff603de68d73eec8716fb59c42ed16d 367 Gene3D G3DSA:2.120.10.10 50 117 3.8E-6 T 19-04-2016 IPR011040 Sialidases AMED_6782 bff603de68d73eec8716fb59c42ed16d 367 Gene3D G3DSA:2.120.10.10 298 363 2.7E-11 T 19-04-2016 IPR011040 Sialidases AMED_6782 bff603de68d73eec8716fb59c42ed16d 367 Gene3D G3DSA:2.120.10.10 118 165 2.7E-11 T 19-04-2016 IPR011040 Sialidases AMED_6782 bff603de68d73eec8716fb59c42ed16d 367 SUPERFAMILY SSF110296 42 152 1.1E-15 T 19-04-2016 AMED_6782 bff603de68d73eec8716fb59c42ed16d 367 SUPERFAMILY SSF110296 205 365 1.1E-15 T 19-04-2016 AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 PIRSF PIRSF000535 2 309 2.8E-54 T 19-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 Gene3D G3DSA:3.40.1190.20 35 308 9.6E-41 T 19-04-2016 IPR029056 Ribokinase-like AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 PANTHER PTHR10584 1 299 2.4E-41 T 19-04-2016 AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 SUPERFAMILY SSF53613 5 286 8.73E-43 T 19-04-2016 IPR029056 Ribokinase-like AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 PRINTS PR00990 Ribokinase signature 34 53 2.3E-5 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 PRINTS PR00990 Ribokinase signature 176 191 2.3E-5 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 PRINTS PR00990 Ribokinase signature 213 224 2.3E-5 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 Pfam PF00294 pfkB family carbohydrate kinase 14 281 3.3E-24 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_3922 cea2b862ac435c95dba0cbc31cd5db95 310 PANTHER PTHR10584:SF170 1 299 2.4E-41 T 19-04-2016 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Gene3D G3DSA:3.40.50.2300 3 119 4.7E-39 T 19-04-2016 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SUPERFAMILY SSF46894 131 228 1.3E-31 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 PANTHER PTHR26402 2 228 9.1E-162 T 19-04-2016 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 5.7E-27 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SMART SM00448 2 112 5.5E-44 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Pfam PF00072 Response regulator receiver domain 4 113 4.1E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 PANTHER PTHR26402:SF459 2 228 9.1E-162 T 19-04-2016 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 Gene3D G3DSA:1.10.10.10 132 228 1.0E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SMART SM00862 151 227 4.9E-29 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0460 3e0091d50ae0e5ccb739bf76a3d5e9ef 229 SUPERFAMILY SSF52172 3 119 3.7E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5959 2ada22abadd3cdf084d38870ed225980 199 Pfam PF06445 GyrI-like small molecule binding domain 22 195 9.4E-29 T 19-04-2016 IPR029442 GyrI-like small molecule binding domain AMED_5959 2ada22abadd3cdf084d38870ed225980 199 Gene3D G3DSA:3.20.80.10 1 198 1.8E-75 T 19-04-2016 IPR011256 Regulatory factor, effector binding domain AMED_5959 2ada22abadd3cdf084d38870ed225980 199 SUPERFAMILY SSF55136 123 191 3.4E-10 T 19-04-2016 IPR011256 Regulatory factor, effector binding domain AMED_5959 2ada22abadd3cdf084d38870ed225980 199 PIRSF PIRSF031644 1 199 4.1E-60 T 19-04-2016 IPR008319 Uncharacterised conserved protein UCP031644 AMED_7106 390cf6c903f96a52840f513ad82a6680 206 Pfam PF01478 Type IV leader peptidase family 63 171 5.2E-8 T 19-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMED_4177 1147815a96ded93d843495a38200623c 322 Gene3D G3DSA:1.10.1740.10 4 80 3.0E-24 T 19-04-2016 AMED_4177 1147815a96ded93d843495a38200623c 322 Gene3D G3DSA:1.10.10.10 123 177 2.7E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4177 1147815a96ded93d843495a38200623c 322 PANTHER PTHR30173:SF22 1 309 5.7E-86 T 19-04-2016 AMED_4177 1147815a96ded93d843495a38200623c 322 Pfam PF12680 SnoaL-like domain 197 293 4.6E-12 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_4177 1147815a96ded93d843495a38200623c 322 SUPERFAMILY SSF88946 4 78 2.55E-22 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4177 1147815a96ded93d843495a38200623c 322 SUPERFAMILY SSF88659 122 177 1.48E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4177 1147815a96ded93d843495a38200623c 322 PANTHER PTHR30173 1 309 5.7E-86 T 19-04-2016 AMED_4177 1147815a96ded93d843495a38200623c 322 Pfam PF04542 Sigma-70 region 2 9 75 3.2E-22 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4177 1147815a96ded93d843495a38200623c 322 SUPERFAMILY SSF54427 189 303 6.25E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_4177 1147815a96ded93d843495a38200623c 322 Gene3D G3DSA:3.10.450.50 188 301 2.7E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_4177 1147815a96ded93d843495a38200623c 322 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 2 306 1.5E-102 T 19-04-2016 IPR014305 RNA polymerase sigma-G type, actinobacteria AMED_4177 1147815a96ded93d843495a38200623c 322 Pfam PF08281 Sigma-70, region 4 124 175 5.9E-14 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4177 1147815a96ded93d843495a38200623c 322 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 29 61 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4177 1147815a96ded93d843495a38200623c 322 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 176 2.6E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5993 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 PANTHER PTHR31084 263 693 9.5E-53 T 19-04-2016 AMED_5993 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 PANTHER PTHR31084:SF4 263 693 9.5E-53 T 19-04-2016 AMED_5993 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 Gene3D G3DSA:1.50.10.10 415 496 3.5E-5 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5993 4e6f5cd22eb54f649eba7a4f0ed1e5bd 758 SUPERFAMILY SSF48208 251 689 6.12E-34 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 SMART SM00448 2 116 2.3E-20 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 Gene3D G3DSA:3.40.50.2300 2 152 1.5E-31 T 19-04-2016 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 SMART SM00421 152 209 3.7E-21 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 SUPERFAMILY SSF52172 3 132 9.82E-27 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 PANTHER PTHR26402:SF151 2 215 1.9E-68 T 19-04-2016 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 Gene3D G3DSA:1.10.10.10 153 214 2.6E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.3E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.3E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.3E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 Pfam PF00072 Response regulator receiver domain 6 116 5.7E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 PANTHER PTHR26402 2 215 1.9E-68 T 19-04-2016 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 7.3E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8335 f0d01486a50dd207c51ebe99adf4e520 217 SUPERFAMILY SSF46894 140 216 4.08E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_7419 94e57dd7323f665f8ac6002cf25dc758 428 PANTHER PTHR30061:SF1 8 424 2.1E-56 T 19-04-2016 AMED_7419 94e57dd7323f665f8ac6002cf25dc758 428 SUPERFAMILY SSF53850 24 426 5.18E-54 T 19-04-2016 AMED_7419 94e57dd7323f665f8ac6002cf25dc758 428 PANTHER PTHR30061 8 424 2.1E-56 T 19-04-2016 AMED_7419 94e57dd7323f665f8ac6002cf25dc758 428 Pfam PF01547 Bacterial extracellular solute-binding protein 51 334 1.0E-28 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_7419 94e57dd7323f665f8ac6002cf25dc758 428 Gene3D G3DSA:3.40.190.10 32 216 3.5E-36 T 19-04-2016 AMED_2243 2c3d26fe76b3cc4f71422756cd896eaf 106 Gene3D G3DSA:3.30.1310.10 9 100 6.0E-18 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_2243 2c3d26fe76b3cc4f71422756cd896eaf 106 Pfam PF02575 YbaB/EbfC DNA-binding family 15 100 1.4E-17 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_2243 2c3d26fe76b3cc4f71422756cd896eaf 106 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 9 97 2.0E-14 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_2243 2c3d26fe76b3cc4f71422756cd896eaf 106 SUPERFAMILY SSF82607 10 98 4.71E-14 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_2243 2c3d26fe76b3cc4f71422756cd896eaf 106 PIRSF PIRSF004555 6 104 8.0E-15 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 SUPERFAMILY SSF51338 350 387 5.19E-21 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 SUPERFAMILY SSF51338 4 58 5.19E-21 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 Gene3D G3DSA:2.30.40.10 5 63 2.4E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 PANTHER PTHR11271:SF39 17 405 3.2E-102 T 19-04-2016 AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 Gene3D G3DSA:3.20.20.140 64 385 1.4E-37 T 19-04-2016 AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 Pfam PF01979 Amidohydrolase family 224 372 7.0E-14 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 SUPERFAMILY SSF51556 57 351 2.86E-46 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8432 d04d2b22adc0cd0fc11f973565ce1fdc 405 PANTHER PTHR11271 17 405 3.2E-102 T 19-04-2016 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 SUPERFAMILY SSF48452 513 607 5.69E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 Pfam PF00069 Protein kinase domain 142 329 1.0E-26 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 Pfam PF16918 Protein kinase G tetratricopeptide repeat 433 735 1.9E-66 T 19-04-2016 IPR031636 Protein kinase G, tetratricopeptide repeat containing domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:1.10.510.10 222 328 4.2E-19 T 19-04-2016 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:1.25.40.10 478 610 2.0E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 PANTHER PTHR24363:SF0 30 396 1.2E-85 T 19-04-2016 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 PANTHER PTHR24363 30 396 1.2E-85 T 19-04-2016 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 Pfam PF16919 Protein kinase G rubredoxin domain 64 132 2.4E-20 T 19-04-2016 IPR031634 Protein kinase G, rubredoxin domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 SMART SM00220 134 380 3.6E-14 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 Gene3D G3DSA:3.30.200.20 128 221 4.6E-16 T 19-04-2016 AMED_5849 a7041f503c8da3fcca4cfc1219ab3adc 737 SUPERFAMILY SSF56112 125 328 3.96E-41 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 Pfam PF01593 Flavin containing amine oxidoreductase 15 272 3.6E-18 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 SUPERFAMILY SSF51905 7 306 1.94E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 SUPERFAMILY SSF51905 387 418 1.94E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 PANTHER PTHR10742:SF275 6 418 6.2E-112 T 19-04-2016 AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 PANTHER PTHR10742 6 418 6.2E-112 T 19-04-2016 AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 Gene3D G3DSA:3.50.50.60 8 99 7.3E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2951 1cf0aa563c995ad953f9a5491ca5bb5a 422 Gene3D G3DSA:3.50.50.60 177 292 7.3E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:3.30.200.20 4 79 3.1E-29 T 19-04-2016 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Pfam PF00069 Protein kinase domain 11 264 3.0E-52 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 17 40 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 PANTHER PTHR24362:SF160 5 326 4.8E-107 T 19-04-2016 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 PANTHER PTHR24362 5 326 4.8E-107 T 19-04-2016 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 578 640 9.7E-14 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 358 432 1.3E-6 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 509 569 4.5E-11 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Pfam PF03793 PASTA domain 440 503 5.8E-14 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 354 433 1.4E-5 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 435 503 7.3E-12 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 504 569 3.4E-9 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 SMART SM00740 573 641 2.8E-11 T 19-04-2016 IPR005543 PASTA domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 134 146 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 Gene3D G3DSA:1.10.510.10 80 270 7.3E-54 T 19-04-2016 AMED_0051 9df78404b099400a6ff2af433aa878d3 658 SUPERFAMILY SSF56112 8 283 5.8E-79 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0051 9df78404b099400a6ff2af433aa878d3 658 SMART SM00220 11 274 4.4E-66 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2657 5fa50a0c8cfba44eebab2249aaf1fdb9 332 Gene3D G3DSA:3.20.20.30 4 323 6.5E-81 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2657 5fa50a0c8cfba44eebab2249aaf1fdb9 332 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 323 1.2E-103 T 19-04-2016 IPR019949 Luciferase family oxidoreductase, group 1 AMED_2657 5fa50a0c8cfba44eebab2249aaf1fdb9 332 PANTHER PTHR30137 1 324 1.0E-96 T 19-04-2016 AMED_2657 5fa50a0c8cfba44eebab2249aaf1fdb9 332 PANTHER PTHR30137:SF2 1 324 1.0E-96 T 19-04-2016 AMED_2657 5fa50a0c8cfba44eebab2249aaf1fdb9 332 SUPERFAMILY SSF51679 4 323 5.63E-68 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2657 5fa50a0c8cfba44eebab2249aaf1fdb9 332 Pfam PF00296 Luciferase-like monooxygenase 12 299 2.4E-39 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3421 97fa435f02d731737ad97789442e074f 296 PANTHER PTHR18964 6 180 3.2E-38 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 PANTHER PTHR18964 212 294 3.2E-38 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 Gene3D G3DSA:3.30.420.40 141 273 1.6E-30 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 SUPERFAMILY SSF53067 6 294 6.26E-47 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 Gene3D G3DSA:3.30.420.40 5 140 5.7E-34 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 PANTHER PTHR18964:SF123 6 180 3.2E-38 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 PANTHER PTHR18964:SF123 212 294 3.2E-38 T 19-04-2016 AMED_3421 97fa435f02d731737ad97789442e074f 296 Pfam PF00480 ROK family 7 294 5.1E-41 T 19-04-2016 IPR000600 ROK family AMED_6182 9638acc4d289d5c6b42ea5f3f411eda2 156 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 25 144 9.6E-27 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_6182 9638acc4d289d5c6b42ea5f3f411eda2 156 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 26 108 5.6E-12 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_6182 9638acc4d289d5c6b42ea5f3f411eda2 156 SUPERFAMILY SSF50475 24 144 3.93E-24 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6182 9638acc4d289d5c6b42ea5f3f411eda2 156 Gene3D G3DSA:2.30.110.10 23 145 8.8E-21 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 PIRSF PIRSF001112 1 386 1.1E-111 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 Pfam PF06441 Epoxide hydrolase N terminus 2 106 4.4E-37 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 PRINTS PR00412 Epoxide hydrolase signature 358 380 6.1E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 PRINTS PR00412 Epoxide hydrolase signature 126 141 6.1E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 PRINTS PR00412 Epoxide hydrolase signature 97 115 6.1E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 Gene3D G3DSA:3.40.50.1820 2 382 9.9E-130 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6850 09d0d91908a130cc0d4166cab465c072 387 SUPERFAMILY SSF53474 2 380 4.54E-89 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6850 09d0d91908a130cc0d4166cab465c072 387 PANTHER PTHR21661 1 387 5.1E-98 T 19-04-2016 AMED_6850 09d0d91908a130cc0d4166cab465c072 387 PANTHER PTHR21661:SF35 1 387 5.1E-98 T 19-04-2016 AMED_5367 77cad3fcd1dad70fa7e38e92ab823725 280 Gene3D G3DSA:1.10.3720.10 7 268 3.3E-46 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5367 77cad3fcd1dad70fa7e38e92ab823725 280 PANTHER PTHR32243 2 280 1.1E-164 T 19-04-2016 AMED_5367 77cad3fcd1dad70fa7e38e92ab823725 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 266 7.5E-10 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5367 77cad3fcd1dad70fa7e38e92ab823725 280 SUPERFAMILY SSF161098 5 280 7.1E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5367 77cad3fcd1dad70fa7e38e92ab823725 280 PANTHER PTHR32243:SF28 2 280 1.1E-164 T 19-04-2016 AMED_5357 3753901ee1c84b9235748c3611ca4327 132 Pfam PF06210 Protein of unknown function (DUF1003) 31 114 8.9E-17 T 19-04-2016 IPR010406 Protein of unknown function DUF1003 AMED_5292 12da71de25248123d676c71ad35a9e25 146 PANTHER PTHR33164:SF1 5 144 1.2E-18 T 19-04-2016 AMED_5292 12da71de25248123d676c71ad35a9e25 146 SMART SM00347 30 129 3.7E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5292 12da71de25248123d676c71ad35a9e25 146 SUPERFAMILY SSF46785 5 144 4.09E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5292 12da71de25248123d676c71ad35a9e25 146 Gene3D G3DSA:1.10.10.10 4 144 4.4E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5292 12da71de25248123d676c71ad35a9e25 146 Pfam PF12802 MarR family 36 92 1.1E-9 T 19-04-2016 AMED_5292 12da71de25248123d676c71ad35a9e25 146 PANTHER PTHR33164 5 144 1.2E-18 T 19-04-2016 AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 PANTHER PTHR24320 4 238 8.7E-22 T 19-04-2016 AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 Gene3D G3DSA:3.40.50.720 3 184 5.1E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 Pfam PF00106 short chain dehydrogenase 4 85 3.6E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 9.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 9.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 9.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3492 3853f9b42a0878b5e18bfd9fc219cfdd 253 SUPERFAMILY SSF51735 3 188 1.55E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3496 8218f90c26fda467e571ff55ee075267 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3496 8218f90c26fda467e571ff55ee075267 251 SUPERFAMILY SSF51735 5 248 7.5E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 7.6E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 7.6E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 7.6E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 247 5.1E-66 T 19-04-2016 AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 7.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 7.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 7.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 7.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 7.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 0.0028 T 19-04-2016 AMED_3496 8218f90c26fda467e571ff55ee075267 251 PANTHER PTHR24322 150 182 2.1E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 PANTHER PTHR24322 11 134 2.1E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3496 8218f90c26fda467e571ff55ee075267 251 Gene3D G3DSA:3.40.50.720 2 248 1.4E-82 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:1.10.1780.10 2 122 2.1E-41 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 SUPERFAMILY SSF52540 471 784 1.07E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 SMART SM00382 185 329 5.7E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 SMART SM00382 522 701 6.4E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 302 4.9E-13 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 SUPERFAMILY SSF81923 2 124 5.69E-25 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 SUPERFAMILY SSF52540 148 454 4.3E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 2 47 2.9E-14 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 72 121 3.7E-17 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 SMART SM01086 700 791 1.8E-33 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 PANTHER PTHR11638 1 819 0.0 T 19-04-2016 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF07724 AAA domain (Cdc48 subfamily) 521 694 1.1E-49 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 PANTHER PTHR11638:SF18 1 819 0.0 T 19-04-2016 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 280 292 - T 19-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:3.40.50.300 148 328 3.7E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:3.40.50.300 475 646 2.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:3.40.50.300 681 711 2.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:1.10.8.60 712 784 3.1E-29 T 19-04-2016 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 571 589 1.2E-38 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 633 647 1.2E-38 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 526 544 1.2E-38 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 1.2E-38 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF02151 UvrB/uvrC motif 402 434 9.8E-8 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 700 779 1.1E-24 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMED_8729 1173a38f17a080dafa0d15e9b58fc41c 831 Gene3D G3DSA:1.10.8.60 330 413 1.2E-34 T 19-04-2016 AMED_6636 bac08f8f7631b88b36a9c3a909b09131 545 PANTHER PTHR33744 5 538 7.6E-98 T 19-04-2016 AMED_6636 bac08f8f7631b88b36a9c3a909b09131 545 Pfam PF13556 PucR C-terminal helix-turn-helix domain 470 528 4.6E-14 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_6636 bac08f8f7631b88b36a9c3a909b09131 545 PANTHER PTHR33744:SF5 5 538 7.6E-98 T 19-04-2016 AMED_6636 bac08f8f7631b88b36a9c3a909b09131 545 Pfam PF07905 Purine catabolism regulatory protein-like family 7 129 2.1E-36 T 19-04-2016 IPR012914 Purine catabolism PurC-like domain AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PANTHER PTHR11632 318 630 0.0 T 19-04-2016 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PANTHER PTHR11632 1 301 0.0 T 19-04-2016 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF46977 480 634 3.4E-40 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PANTHER PTHR11632:SF56 318 630 0.0 T 19-04-2016 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PANTHER PTHR11632:SF56 1 301 0.0 T 19-04-2016 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 4.9E-6 T 19-04-2016 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 393 415 4.9E-6 T 19-04-2016 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:3.90.700.10 250 383 1.4E-36 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2352 eedeea138079192210ad73d74a4cb37e 638 PIRSF PIRSF000171 1 604 1.2E-39 T 19-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit AMED_2352 eedeea138079192210ad73d74a4cb37e 638 Pfam PF02910 Fumarate reductase flavoprotein C-term 487 599 1.8E-23 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:3.50.50.60 385 451 1.2E-105 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:3.50.50.60 2 249 1.2E-105 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF56425 243 389 1.24E-33 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2352 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF51905 3 270 1.27E-73 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 SUPERFAMILY SSF51905 393 472 1.27E-73 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 Gene3D G3DSA:1.20.58.100 478 572 1.2E-30 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMED_2352 eedeea138079192210ad73d74a4cb37e 638 Pfam PF00890 FAD binding domain 10 429 9.7E-93 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 Gene3D G3DSA:3.40.47.10 159 324 3.4E-49 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 104 184 8.7E-28 T 19-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 Gene3D G3DSA:3.40.47.10 6 158 2.2E-51 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 322 5.2E-35 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 PANTHER PTHR34069 5 329 1.3E-120 T 19-04-2016 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 PANTHER PTHR34069:SF2 5 329 1.3E-120 T 19-04-2016 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 SUPERFAMILY SSF53901 6 323 2.34E-60 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 4 322 62.378 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_0266 8e4c0947cbc233031745abc9845dfc2b 329 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 6 322 1.6E-101 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF52540 404 650 8.86E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF13424 Tetratricopeptide repeat 1085 1156 2.6E-10 T 19-04-2016 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 PANTHER PTHR19959 461 471 3.7E-32 T 19-04-2016 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 PANTHER PTHR19959 778 1215 3.7E-32 T 19-04-2016 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF48452 1076 1196 2.13E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 Gene3D G3DSA:1.25.40.10 793 1104 4.8E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 Gene3D G3DSA:1.25.40.10 1105 1207 7.1E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 PANTHER PTHR19959:SF128 461 471 3.7E-32 T 19-04-2016 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 PANTHER PTHR19959:SF128 778 1215 3.7E-32 T 19-04-2016 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF48452 992 1112 6.45E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 SUPERFAMILY SSF48452 792 888 2.28E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF00931 NB-ARC domain 421 589 1.0E-9 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF13374 Tetratricopeptide repeat 1166 1206 0.0018 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7898 d01d61f3dbddf63493975cbbcc26d058 1226 Pfam PF13374 Tetratricopeptide repeat 832 869 0.01 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 Pfam PF00501 AMP-binding enzyme 28 471 1.8E-75 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 Gene3D G3DSA:2.30.38.10 381 462 4.7E-17 T 19-04-2016 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 SUPERFAMILY SSF56801 20 572 3.27E-102 T 19-04-2016 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 Gene3D G3DSA:3.40.50.980 185 351 1.3E-25 T 19-04-2016 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 Gene3D G3DSA:3.30.300.30 463 567 1.9E-17 T 19-04-2016 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 PANTHER PTHR22754 27 573 6.9E-170 T 19-04-2016 AMED_3367 54b942cd21f34302d9bd88475a9a36e3 581 Gene3D G3DSA:3.40.50.980 22 184 6.0E-28 T 19-04-2016 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 379 4.8E-16 T 19-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PANTHER PTHR11757 1 656 8.5E-302 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 485 504 9.7E-46 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 589 611 9.7E-46 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 430 448 9.7E-46 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 570 585 9.7E-46 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 457 481 9.7E-46 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 515 535 9.7E-46 T 19-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 SUPERFAMILY SSF50993 3 398 1.78E-46 T 19-04-2016 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 PANTHER PTHR11757:SF13 1 656 8.5E-302 T 19-04-2016 AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 Gene3D G3DSA:3.40.50.1820 346 656 4.9E-90 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 SUPERFAMILY SSF53474 404 656 2.42E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2400 1ba912786e152a523bb6ff38f7531e81 658 Pfam PF00326 Prolyl oligopeptidase family 455 656 1.6E-51 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_8486 8ce13bdc55750e4fb475ec2cac18dbbb 255 SUPERFAMILY SSF50969 34 228 7.85E-11 T 19-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AMED_8486 8ce13bdc55750e4fb475ec2cac18dbbb 255 Gene3D G3DSA:2.130.10.10 89 208 5.5E-4 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_8486 8ce13bdc55750e4fb475ec2cac18dbbb 255 PANTHER PTHR31270:SF0 27 253 9.6E-61 T 19-04-2016 AMED_8486 8ce13bdc55750e4fb475ec2cac18dbbb 255 PANTHER PTHR31270 27 253 9.6E-61 T 19-04-2016 AMED_8486 8ce13bdc55750e4fb475ec2cac18dbbb 255 Pfam PF05096 Glutamine cyclotransferase 10 250 8.2E-87 T 19-04-2016 IPR007788 Glutamine cyclotransferase AMED_0085 3385025e21e1207de15c91006cad9ec1 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 78 1.9E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0085 3385025e21e1207de15c91006cad9ec1 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 44 75 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_0085 3385025e21e1207de15c91006cad9ec1 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 3.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0085 3385025e21e1207de15c91006cad9ec1 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 3.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0085 3385025e21e1207de15c91006cad9ec1 215 SUPERFAMILY SSF46689 22 95 6.16E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0085 3385025e21e1207de15c91006cad9ec1 215 Gene3D G3DSA:1.10.357.10 22 197 1.3E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0085 3385025e21e1207de15c91006cad9ec1 215 PANTHER PTHR30055:SF74 15 207 9.2E-34 T 19-04-2016 AMED_0085 3385025e21e1207de15c91006cad9ec1 215 PANTHER PTHR30055 15 207 9.2E-34 T 19-04-2016 AMED_6629 662cd4794ae13eb739391cc6634202ef 341 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 3 331 28.061 T 19-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMED_6629 662cd4794ae13eb739391cc6634202ef 341 Gene3D G3DSA:1.10.10.10 3 86 9.2E-36 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6629 662cd4794ae13eb739391cc6634202ef 341 PANTHER PTHR34824 5 338 5.7E-116 T 19-04-2016 AMED_6629 662cd4794ae13eb739391cc6634202ef 341 Pfam PF08220 DeoR-like helix-turn-helix domain 18 64 1.7E-5 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_6629 662cd4794ae13eb739391cc6634202ef 341 SUPERFAMILY SSF55781 73 339 1.9E-58 T 19-04-2016 IPR029016 GAF domain-like AMED_6629 662cd4794ae13eb739391cc6634202ef 341 SUPERFAMILY SSF46785 4 84 2.9E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6629 662cd4794ae13eb739391cc6634202ef 341 Gene3D G3DSA:3.30.450.40 178 339 6.2E-42 T 19-04-2016 IPR029016 GAF domain-like AMED_6629 662cd4794ae13eb739391cc6634202ef 341 PIRSF PIRSF005485 1 341 4.6E-106 T 19-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMED_6629 662cd4794ae13eb739391cc6634202ef 341 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 5 337 9.0E-97 T 19-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMED_6629 662cd4794ae13eb739391cc6634202ef 341 Pfam PF01628 HrcA protein C terminal domain 105 324 4.2E-64 T 19-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 AMED_7611 0435dd13c9c37959149a81f04a6a85a6 368 Pfam PF02470 MlaD protein 38 114 4.9E-15 T 19-04-2016 IPR003399 Mce/MlaD AMED_7611 0435dd13c9c37959149a81f04a6a85a6 368 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 297 1.1E-58 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7611 0435dd13c9c37959149a81f04a6a85a6 368 PANTHER PTHR33371:SF2 1 364 6.0E-103 T 19-04-2016 AMED_7611 0435dd13c9c37959149a81f04a6a85a6 368 PANTHER PTHR33371 1 364 6.0E-103 T 19-04-2016 AMED_4913 0a9a1bdba3677d5975dc878842337145 311 Gene3D G3DSA:3.40.50.300 1 262 1.6E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4913 0a9a1bdba3677d5975dc878842337145 311 SUPERFAMILY SSF52540 1 261 6.3E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4913 0a9a1bdba3677d5975dc878842337145 311 PANTHER PTHR13696 1 269 1.9E-42 T 19-04-2016 AMED_4913 0a9a1bdba3677d5975dc878842337145 311 Pfam PF13614 AAA domain 1 178 3.2E-33 T 19-04-2016 IPR025669 AAA domain AMED_7273 376bcaaefcd5cfa814a64b9fe7032e8c 211 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 114 1.6E-7 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7273 376bcaaefcd5cfa814a64b9fe7032e8c 211 PANTHER PTHR34846:SF1 3 190 4.2E-46 T 19-04-2016 AMED_7273 376bcaaefcd5cfa814a64b9fe7032e8c 211 Gene3D G3DSA:1.20.1290.10 35 174 1.8E-21 T 19-04-2016 IPR029032 AhpD-like AMED_7273 376bcaaefcd5cfa814a64b9fe7032e8c 211 PANTHER PTHR34846 3 190 4.2E-46 T 19-04-2016 AMED_7273 376bcaaefcd5cfa814a64b9fe7032e8c 211 SUPERFAMILY SSF69118 2 174 5.63E-26 T 19-04-2016 IPR029032 AhpD-like AMED_9061 7cab1251113484d6fe96229701744be9 268 PIRSF PIRSF006779 1 264 3.7E-70 T 19-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase AMED_9061 7cab1251113484d6fe96229701744be9 268 PANTHER PTHR35092:SF1 2 268 1.7E-74 T 19-04-2016 AMED_9061 7cab1251113484d6fe96229701744be9 268 SUPERFAMILY SSF102522 4 156 7.45E-54 T 19-04-2016 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal AMED_9061 7cab1251113484d6fe96229701744be9 268 PANTHER PTHR35092 2 268 1.7E-74 T 19-04-2016 AMED_9061 7cab1251113484d6fe96229701744be9 268 SUPERFAMILY SSF101852 171 261 3.53E-15 T 19-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal AMED_9061 7cab1251113484d6fe96229701744be9 268 Pfam PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase 6 258 1.1E-74 T 19-04-2016 IPR002747 SAM-dependent chlorinase/fluorinase AMED_9061 7cab1251113484d6fe96229701744be9 268 Gene3D G3DSA:2.40.30.90 170 262 8.4E-21 T 19-04-2016 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal AMED_8768 bc74f1e283ab996bf4128484a47bf3ae 404 SMART SM00530 10 66 1.3E-11 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8768 bc74f1e283ab996bf4128484a47bf3ae 404 Pfam PF13560 Helix-turn-helix domain 7 65 2.8E-11 T 19-04-2016 AMED_8768 bc74f1e283ab996bf4128484a47bf3ae 404 Gene3D G3DSA:1.10.260.40 3 67 6.7E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8768 bc74f1e283ab996bf4128484a47bf3ae 404 SUPERFAMILY SSF47413 5 71 7.78E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 155 313 1.0E-22 T 19-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 Gene3D G3DSA:3.30.360.10 155 310 1.2E-55 T 19-04-2016 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 SUPERFAMILY SSF55347 146 310 1.96E-46 T 19-04-2016 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 SUPERFAMILY SSF51735 3 171 3.06E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6044 9321035963270bbb8387bcdfa19769c0 342 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 129 1.1E-24 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 342 1.1E-112 T 19-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 SMART SM00859 4 136 6.2E-45 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 Gene3D G3DSA:3.40.50.720 1 154 3.9E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6044 9321035963270bbb8387bcdfa19769c0 342 PANTHER PTHR32338 2 342 3.6E-140 T 19-04-2016 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 PANTHER PTHR32338:SF8 2 342 3.6E-140 T 19-04-2016 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 141 157 - T 19-04-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6044 9321035963270bbb8387bcdfa19769c0 342 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 3 336 37.288 T 19-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_7570 ae44292f72600a95c3638fb84116c159 331 SMART SM00861 3 178 7.3E-64 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_7570 ae44292f72600a95c3638fb84116c159 331 Gene3D G3DSA:3.40.50.920 196 317 1.3E-43 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_7570 ae44292f72600a95c3638fb84116c159 331 PANTHER PTHR11624 4 319 6.9E-174 T 19-04-2016 IPR033247 Transketolase family AMED_7570 ae44292f72600a95c3638fb84116c159 331 Pfam PF02779 Transketolase, pyrimidine binding domain 4 174 1.7E-43 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_7570 ae44292f72600a95c3638fb84116c159 331 SUPERFAMILY SSF52518 3 181 8.34E-67 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7570 ae44292f72600a95c3638fb84116c159 331 Pfam PF02780 Transketolase, C-terminal domain 193 313 1.1E-40 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMED_7570 ae44292f72600a95c3638fb84116c159 331 SUPERFAMILY SSF52922 191 319 1.7E-39 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_7570 ae44292f72600a95c3638fb84116c159 331 PANTHER PTHR11624:SF79 4 319 6.9E-174 T 19-04-2016 AMED_7570 ae44292f72600a95c3638fb84116c159 331 Gene3D G3DSA:3.40.50.970 3 181 6.9E-72 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 PANTHER PTHR10992 1 78 1.5E-31 T 19-04-2016 AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 PANTHER PTHR10992 127 219 1.5E-31 T 19-04-2016 AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 Gene3D G3DSA:3.40.50.1820 1 79 1.4E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 Gene3D G3DSA:3.40.50.1820 328 449 1.4E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 Gene3D G3DSA:3.40.50.1820 126 250 1.4E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 SUPERFAMILY SSF53474 303 438 1.77E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 SUPERFAMILY SSF53474 26 80 1.77E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 SUPERFAMILY SSF53474 128 182 1.77E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 PANTHER PTHR10992:SF863 348 449 1.5E-31 T 19-04-2016 AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 Pfam PF08386 TAP-like protein 366 461 1.1E-20 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 Pfam PF00561 alpha/beta hydrolase fold 31 297 3.1E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 PANTHER PTHR10992 348 449 1.5E-31 T 19-04-2016 AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 PANTHER PTHR10992:SF863 127 219 1.5E-31 T 19-04-2016 AMED_5694 e6b436fb534289c1656ce74d7f9fbd08 462 PANTHER PTHR10992:SF863 1 78 1.5E-31 T 19-04-2016 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 PANTHER PTHR11699 4 481 1.3E-194 T 19-04-2016 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 Gene3D G3DSA:3.40.309.10 266 444 7.2E-67 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 PANTHER PTHR11699:SF212 4 481 1.3E-194 T 19-04-2016 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 Pfam PF00171 Aldehyde dehydrogenase family 13 478 3.6E-155 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 Gene3D G3DSA:3.40.605.10 6 265 7.8E-83 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_1401 f727d13774ac3e94aadfa324b133b90d 484 SUPERFAMILY SSF53720 3 480 1.96E-155 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 415 25.608 T 19-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.1E-44 T 19-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 SUPERFAMILY SSF51735 165 299 1.18E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0480 95e870ea9571294ab268369e0e4277bf 435 PANTHER PTHR13812 1 432 5.8E-89 T 19-04-2016 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 PANTHER PTHR13812:SF18 1 432 5.8E-89 T 19-04-2016 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 19-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 SUPERFAMILY SSF69075 317 418 9.15E-16 T 19-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 299 6.2E-26 T 19-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMED_0480 95e870ea9571294ab268369e0e4277bf 435 Gene3D G3DSA:3.40.50.720 172 301 1.3E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0480 95e870ea9571294ab268369e0e4277bf 435 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 416 2.1E-20 T 19-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 416 9.4E-118 T 19-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 SUPERFAMILY SSF69742 1 158 1.83E-43 T 19-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0480 95e870ea9571294ab268369e0e4277bf 435 PIRSF PIRSF000445 1 429 6.2E-129 T 19-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0947 8e30c3723bcf6d3a287b4982e60095cc 264 Pfam PF13673 Acetyltransferase (GNAT) domain 43 121 1.6E-7 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_0947 8e30c3723bcf6d3a287b4982e60095cc 264 Gene3D G3DSA:3.40.630.30 5 120 2.0E-13 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0947 8e30c3723bcf6d3a287b4982e60095cc 264 SUPERFAMILY SSF55729 6 208 1.05E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3557 8883ec324eac813f614ccf0395bba710 494 Pfam PF00072 Response regulator receiver domain 343 452 1.1E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3557 8883ec324eac813f614ccf0395bba710 494 SUPERFAMILY SSF52172 343 471 8.82E-28 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3557 8883ec324eac813f614ccf0395bba710 494 SMART SM00448 342 452 1.6E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3557 8883ec324eac813f614ccf0395bba710 494 Pfam PF07730 Histidine kinase 158 222 6.8E-18 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_3557 8883ec324eac813f614ccf0395bba710 494 Gene3D G3DSA:3.40.50.2300 343 469 6.8E-31 T 19-04-2016 AMED_3557 8883ec324eac813f614ccf0395bba710 494 SUPERFAMILY SSF55874 243 341 1.33E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3557 8883ec324eac813f614ccf0395bba710 494 PANTHER PTHR24421 32 343 5.0E-79 T 19-04-2016 AMED_3557 8883ec324eac813f614ccf0395bba710 494 PANTHER PTHR24421:SF26 32 343 5.0E-79 T 19-04-2016 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 SUPERFAMILY SSF51306 96 215 4.36E-32 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_3474 659693b14e825ed1329209eee11a8e6a 217 PANTHER PTHR33516:SF2 14 217 2.5E-68 T 19-04-2016 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 Pfam PF01726 LexA DNA binding domain 15 76 8.0E-18 T 19-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 Gene3D G3DSA:1.10.10.10 15 80 1.8E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3474 659693b14e825ed1329209eee11a8e6a 217 PANTHER PTHR33516 14 217 2.5E-68 T 19-04-2016 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 SUPERFAMILY SSF46785 16 80 4.83E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3474 659693b14e825ed1329209eee11a8e6a 217 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 133 143 2.3E-9 T 19-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 172 184 2.3E-9 T 19-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 144 155 2.3E-9 T 19-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 Pfam PF00717 Peptidase S24-like 136 200 3.7E-14 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMED_3474 659693b14e825ed1329209eee11a8e6a 217 Gene3D G3DSA:2.10.109.10 98 216 1.8E-39 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_3474 659693b14e825ed1329209eee11a8e6a 217 Hamap MF_00015 LexA repressor [lexA]. 15 217 29.602 T 19-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMED_3474 659693b14e825ed1329209eee11a8e6a 217 TIGRFAM TIGR00498 lexA: repressor LexA 15 216 8.7E-60 T 19-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 PANTHER PTHR10799:SF774 152 409 6.6E-27 T 19-04-2016 AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 Pfam PF00990 Diguanylate cyclase, GGDEF domain 240 405 7.6E-38 T 19-04-2016 IPR000160 GGDEF domain AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 SUPERFAMILY SSF55073 246 408 1.65E-40 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 Gene3D G3DSA:3.30.70.270 242 410 3.8E-45 T 19-04-2016 AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 PANTHER PTHR10799 152 409 6.6E-27 T 19-04-2016 AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 237 408 3.0E-42 T 19-04-2016 IPR000160 GGDEF domain AMED_5530 8862f19a2f356576543812a8ca3d3e3b 412 SMART SM00267 229 409 6.3E-41 T 19-04-2016 IPR000160 GGDEF domain AMED_8317 881702bd501fdb275597cfc277d779ae 166 Gene3D G3DSA:3.40.980.10 10 161 2.9E-40 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8317 881702bd501fdb275597cfc277d779ae 166 Pfam PF00994 Probable molybdopterin binding domain 13 150 1.4E-25 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8317 881702bd501fdb275597cfc277d779ae 166 SMART SM00852 12 156 4.5E-15 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8317 881702bd501fdb275597cfc277d779ae 166 PANTHER PTHR10192 2 165 4.0E-30 T 19-04-2016 AMED_8317 881702bd501fdb275597cfc277d779ae 166 PANTHER PTHR10192:SF5 2 165 4.0E-30 T 19-04-2016 AMED_8317 881702bd501fdb275597cfc277d779ae 166 SUPERFAMILY SSF53218 10 160 1.15E-33 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8317 881702bd501fdb275597cfc277d779ae 166 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 10 149 1.5E-26 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_1320 07933e66255288499234562272b57be3 251 PANTHER PTHR10108 6 237 5.8E-65 T 19-04-2016 AMED_1320 07933e66255288499234562272b57be3 251 SUPERFAMILY SSF53335 30 251 4.91E-18 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1320 07933e66255288499234562272b57be3 251 Pfam PF08241 Methyltransferase domain 55 138 3.1E-7 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_1320 07933e66255288499234562272b57be3 251 Gene3D G3DSA:3.40.50.150 48 251 1.6E-17 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1320 07933e66255288499234562272b57be3 251 PANTHER PTHR10108:SF746 6 237 5.8E-65 T 19-04-2016 AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 Gene3D G3DSA:3.40.50.300 216 261 1.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 Gene3D G3DSA:3.40.50.300 52 94 1.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 Pfam PF01935 Domain of unknown function DUF87 681 931 1.3E-9 T 19-04-2016 IPR002789 Helicase HerA, central domain AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 SUPERFAMILY SSF52540 677 1055 7.32E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 SMART SM00382 57 333 0.81 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 SMART SM00382 699 1019 2.5E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 Gene3D G3DSA:3.40.50.300 896 1067 1.9E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 Gene3D G3DSA:3.40.50.300 685 784 1.9E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 PANTHER PTHR30121 686 1054 1.5E-19 T 19-04-2016 AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 SUPERFAMILY SSF52540 54 99 8.46E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 SUPERFAMILY SSF52540 280 388 8.46E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8303 2360b1bda341b7c227b119643b03c8f2 1085 SUPERFAMILY SSF52540 217 248 8.46E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2844 6fdabde567ddfab10f4c21e12c2b6808 123 SUPERFAMILY SSF54593 7 122 1.27E-8 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2844 6fdabde567ddfab10f4c21e12c2b6808 123 PANTHER PTHR35908:SF1 2 122 2.8E-36 T 19-04-2016 AMED_2844 6fdabde567ddfab10f4c21e12c2b6808 123 Gene3D G3DSA:3.10.180.10 4 122 4.1E-5 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2844 6fdabde567ddfab10f4c21e12c2b6808 123 PANTHER PTHR35908 2 122 2.8E-36 T 19-04-2016 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 PANTHER PTHR11271 277 413 8.3E-23 T 19-04-2016 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 Gene3D G3DSA:2.30.40.10 363 385 1.0E-18 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 Gene3D G3DSA:2.30.40.10 5 59 1.0E-18 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 PANTHER PTHR11271 5 256 8.3E-23 T 19-04-2016 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 PANTHER PTHR11271:SF33 277 413 8.3E-23 T 19-04-2016 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 PANTHER PTHR11271:SF33 5 256 8.3E-23 T 19-04-2016 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 Pfam PF01979 Amidohydrolase family 54 383 8.8E-17 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 Gene3D G3DSA:2.30.40.10 334 362 1.6E-6 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 SUPERFAMILY SSF51338 5 58 1.32E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 SUPERFAMILY SSF51338 349 384 1.32E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 Gene3D G3DSA:3.20.20.140 60 333 4.7E-51 T 19-04-2016 AMED_4932 20b98226fdb5c67738f817e93e4a0bfb 423 SUPERFAMILY SSF51556 57 348 3.56E-46 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 Gene3D G3DSA:3.30.43.10 3 105 3.3E-21 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 PANTHER PTHR11748 5 435 3.2E-40 T 19-04-2016 AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 SUPERFAMILY SSF55103 223 432 4.58E-7 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 Pfam PF01565 FAD binding domain 54 181 1.3E-24 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 PANTHER PTHR11748:SF35 5 435 3.2E-40 T 19-04-2016 AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 Gene3D G3DSA:3.30.465.10 110 218 3.7E-10 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_1993 b0c41096cb4ab463a185e815a0e295ad 444 SUPERFAMILY SSF56176 4 219 1.12E-36 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_6378 6a6c0b9d358c9b8af5d44b287603e247 322 PANTHER PTHR18640:SF9 1 318 7.3E-93 T 19-04-2016 AMED_6378 6a6c0b9d358c9b8af5d44b287603e247 322 PANTHER PTHR18640 1 318 7.3E-93 T 19-04-2016 IPR016833 Putative sodium bile acid cotransporter AMED_6378 6a6c0b9d358c9b8af5d44b287603e247 322 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 7 314 7.1E-95 T 19-04-2016 IPR016833 Putative sodium bile acid cotransporter AMED_6378 6a6c0b9d358c9b8af5d44b287603e247 322 PIRSF PIRSF026166 1 320 9.0E-123 T 19-04-2016 IPR016833 Putative sodium bile acid cotransporter AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 1 261 6.3E-94 T 19-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 Pfam PF00809 Pterin binding enzyme 2 247 6.4E-91 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 1 16 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 Gene3D G3DSA:3.20.20.20 1 263 4.1E-108 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 PANTHER PTHR20941 1 266 2.1E-115 T 19-04-2016 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 SUPERFAMILY SSF51717 1 263 1.83E-94 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 35 48 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_8746 b00ab866b0577a540ebd27dc2ac17292 266 PANTHER PTHR20941:SF1 1 266 2.1E-115 T 19-04-2016 AMED_2645 a44feca3967a733b03fdd042e1b1d686 230 SUPERFAMILY SSF54909 4 229 4.02E-77 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2645 a44feca3967a733b03fdd042e1b1d686 230 PANTHER PTHR36843:SF1 1 230 3.2E-41 T 19-04-2016 AMED_2645 a44feca3967a733b03fdd042e1b1d686 230 PANTHER PTHR36843 1 230 3.2E-41 T 19-04-2016 AMED_2645 a44feca3967a733b03fdd042e1b1d686 230 Gene3D G3DSA:3.30.70.1030 15 131 9.3E-21 T 19-04-2016 AMED_2645 a44feca3967a733b03fdd042e1b1d686 230 Pfam PF06778 Chlorite dismutase 35 220 1.1E-71 T 19-04-2016 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase AMED_2645 a44feca3967a733b03fdd042e1b1d686 230 Gene3D G3DSA:3.30.70.1100 132 229 3.7E-42 T 19-04-2016 AMED_3074 950b6186761587111c1155057cf8a307 568 Gene3D G3DSA:1.50.10.10 383 558 1.3E-5 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_3074 950b6186761587111c1155057cf8a307 568 SUPERFAMILY SSF48208 215 557 3.69E-59 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3074 950b6186761587111c1155057cf8a307 568 Pfam PF01204 Trehalase 372 526 5.0E-6 T 19-04-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 SMART SM01130 7 303 9.1E-58 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 PANTHER PTHR12128:SF19 10 301 4.1E-90 T 19-04-2016 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 PIRSF PIRSF001365 4 306 7.4E-49 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 Pfam PF00701 Dihydrodipicolinate synthetase family 8 301 2.5E-45 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 SUPERFAMILY SSF51569 7 302 3.98E-56 T 19-04-2016 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 Gene3D G3DSA:3.20.20.70 4 302 2.1E-63 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_5974 d4c7a0b1bd7a10111ded046fed2d6823 311 PANTHER PTHR12128 10 301 4.1E-90 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 PANTHER PTHR11649 1 476 3.1E-130 T 19-04-2016 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Gene3D G3DSA:3.40.50.300 215 396 3.7E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Gene3D G3DSA:3.40.50.300 42 207 1.8E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Gene3D G3DSA:3.30.300.20 397 471 1.2E-26 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 PANTHER PTHR11649:SF5 1 476 3.1E-130 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 42 469 1.4E-152 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 391 469 1.3E-24 T 19-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 PIRSF PIRSF006485 40 477 4.3E-157 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 SUPERFAMILY SSF52540 176 473 6.0E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Pfam PF01926 50S ribosome-binding GTPase 217 335 3.2E-20 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Pfam PF01926 50S ribosome-binding GTPase 44 158 9.7E-25 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 Hamap MF_00195 GTPase Der [der]. 41 472 34.596 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 376 2.3E-22 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 42 163 4.2E-22 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 SMART SM00382 214 454 0.71 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 SMART SM00382 40 176 0.16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 SUPERFAMILY SSF52540 43 206 1.13E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 218 238 7.3E-7 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_5997 4af0688ae0d35cd63347254e6b2be81b 487 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 282 7.3E-7 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 PANTHER PTHR18919 1 394 2.3E-202 T 19-04-2016 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 PIRSF PIRSF000429 3 394 2.5E-119 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.3E-136 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 Gene3D G3DSA:3.40.47.10 5 123 1.0E-72 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 Gene3D G3DSA:3.40.47.10 194 276 1.0E-72 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 19-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 SUPERFAMILY SSF53901 271 390 5.35E-36 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 19-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 PANTHER PTHR18919:SF95 1 394 2.3E-202 T 19-04-2016 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 SUPERFAMILY SSF53901 5 270 8.76E-86 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 Pfam PF02803 Thiolase, C-terminal domain 271 391 6.7E-42 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 Gene3D G3DSA:3.40.47.10 142 193 2.0E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 Gene3D G3DSA:3.40.47.10 277 392 2.0E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1578 48a4617b21510b2f4a6a4381b17a9da3 395 Pfam PF00108 Thiolase, N-terminal domain 5 262 2.1E-98 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_8922 4a358dfe9f01af1b80a49270ba459493 117 Pfam PF05331 Protein of unknown function (DUF742) 8 115 2.1E-27 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_8922 4a358dfe9f01af1b80a49270ba459493 117 PANTHER PTHR36221 3 116 3.5E-27 T 19-04-2016 AMED_8922 4a358dfe9f01af1b80a49270ba459493 117 Gene3D G3DSA:1.10.10.10 58 93 2.1E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7826 24573a1815125f69f84b65a5abe11054 402 ProSitePatterns PS01125 ROK family signature. 229 256 - T 19-04-2016 IPR000600 ROK family AMED_7826 24573a1815125f69f84b65a5abe11054 402 SUPERFAMILY SSF53067 98 395 2.49E-50 T 19-04-2016 AMED_7826 24573a1815125f69f84b65a5abe11054 402 Pfam PF13412 Winged helix-turn-helix DNA-binding 41 73 1.4E-5 T 19-04-2016 AMED_7826 24573a1815125f69f84b65a5abe11054 402 Pfam PF00480 ROK family 100 394 3.2E-50 T 19-04-2016 IPR000600 ROK family AMED_7826 24573a1815125f69f84b65a5abe11054 402 Gene3D G3DSA:1.10.10.10 32 92 7.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7826 24573a1815125f69f84b65a5abe11054 402 PANTHER PTHR18964:SF108 75 396 1.9E-64 T 19-04-2016 AMED_7826 24573a1815125f69f84b65a5abe11054 402 PANTHER PTHR18964 75 396 1.9E-64 T 19-04-2016 AMED_7826 24573a1815125f69f84b65a5abe11054 402 Gene3D G3DSA:3.30.420.40 233 374 1.7E-42 T 19-04-2016 AMED_7826 24573a1815125f69f84b65a5abe11054 402 Gene3D G3DSA:3.30.420.40 96 232 9.3E-37 T 19-04-2016 AMED_7826 24573a1815125f69f84b65a5abe11054 402 SUPERFAMILY SSF46785 31 88 3.92E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4574 9010c14002202c6419e70fd161b3c2b5 458 PANTHER PTHR11360:SF3 27 447 1.2E-67 T 19-04-2016 AMED_4574 9010c14002202c6419e70fd161b3c2b5 458 Pfam PF07690 Major Facilitator Superfamily 56 351 2.4E-30 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4574 9010c14002202c6419e70fd161b3c2b5 458 Gene3D G3DSA:1.20.1250.20 31 217 2.7E-17 T 19-04-2016 AMED_4574 9010c14002202c6419e70fd161b3c2b5 458 Gene3D G3DSA:1.20.1250.20 253 444 1.2E-25 T 19-04-2016 AMED_4574 9010c14002202c6419e70fd161b3c2b5 458 PANTHER PTHR11360 27 447 1.2E-67 T 19-04-2016 AMED_4574 9010c14002202c6419e70fd161b3c2b5 458 SUPERFAMILY SSF103473 23 440 3.01E-54 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 SUPERFAMILY SSF88946 6 88 2.98E-16 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 SUPERFAMILY SSF88659 93 153 1.68E-7 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 Gene3D G3DSA:1.10.1740.10 8 93 7.5E-15 T 19-04-2016 AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 Pfam PF04542 Sigma-70 region 2 8 69 8.5E-14 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 PANTHER PTHR30173 2 277 3.6E-88 T 19-04-2016 AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 SUPERFAMILY SSF54427 166 280 7.28E-10 T 19-04-2016 IPR032710 NTF2-like domain AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 153 5.5E-15 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 Gene3D G3DSA:3.10.450.50 165 275 3.6E-5 T 19-04-2016 IPR032710 NTF2-like domain AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 Gene3D G3DSA:1.10.10.10 99 153 2.1E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0965 81039c114cb4756e9fe9690716d09e5d 284 PANTHER PTHR30173:SF11 2 277 3.6E-88 T 19-04-2016 AMED_5665 9e358c0ab5540e2cd42beeb4a5db7848 206 Gene3D G3DSA:1.10.260.40 22 45 3.5E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5665 9e358c0ab5540e2cd42beeb4a5db7848 206 SUPERFAMILY SSF53822 51 164 1.77E-14 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5665 9e358c0ab5540e2cd42beeb4a5db7848 206 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 55 162 2.4E-7 T 19-04-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain AMED_5665 9e358c0ab5540e2cd42beeb4a5db7848 206 Gene3D G3DSA:3.40.50.2300 46 162 8.0E-22 T 19-04-2016 AMED_5665 9e358c0ab5540e2cd42beeb4a5db7848 206 PANTHER PTHR30146 27 162 8.9E-25 T 19-04-2016 AMED_4835 bf83d0b253192ad5ac8c697ea42f7fee 607 SUPERFAMILY SSF69279 9 187 5.1E-17 T 19-04-2016 AMED_4835 bf83d0b253192ad5ac8c697ea42f7fee 607 Pfam PF05954 Phage late control gene D protein (GPD) 60 346 6.3E-9 T 19-04-2016 AMED_4835 bf83d0b253192ad5ac8c697ea42f7fee 607 Gene3D G3DSA:2.40.50.230 382 453 6.8E-19 T 19-04-2016 IPR006531 Gp5 N-terminal AMED_4835 bf83d0b253192ad5ac8c697ea42f7fee 607 SUPERFAMILY SSF69255 377 454 5.23E-20 T 19-04-2016 AMED_8844 b26214c88d14620b8c8a36aac8a58b21 272 Gene3D G3DSA:3.90.79.10 160 221 2.9E-19 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8844 b26214c88d14620b8c8a36aac8a58b21 272 Gene3D G3DSA:3.90.79.10 24 118 2.9E-19 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8844 b26214c88d14620b8c8a36aac8a58b21 272 PANTHER PTHR12318:SF0 1 263 2.1E-55 T 19-04-2016 AMED_8844 b26214c88d14620b8c8a36aac8a58b21 272 SUPERFAMILY SSF55811 24 118 2.75E-17 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8844 b26214c88d14620b8c8a36aac8a58b21 272 SUPERFAMILY SSF55811 160 230 2.75E-17 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8844 b26214c88d14620b8c8a36aac8a58b21 272 PANTHER PTHR12318 1 263 2.1E-55 T 19-04-2016 AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 SUPERFAMILY SSF48498 86 194 9.3E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.4E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.4E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 SUPERFAMILY SSF46689 11 83 1.08E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 Gene3D G3DSA:1.10.357.10 10 196 1.8E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 65 2.9E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 63 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_8475 b426b469603d5e5a1d2b32c43baa5bd8 198 PANTHER PTHR30055 3 196 1.1E-23 T 19-04-2016 AMED_4369 bb6996191d5a45ebd67144ac3491dfaa 177 Pfam PF00583 Acetyltransferase (GNAT) family 50 139 2.3E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_4369 bb6996191d5a45ebd67144ac3491dfaa 177 SUPERFAMILY SSF55729 3 143 4.61E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4369 bb6996191d5a45ebd67144ac3491dfaa 177 Gene3D G3DSA:3.40.630.30 3 143 8.2E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 PANTHER PTHR24220 6 256 6.5E-128 T 19-04-2016 AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 Gene3D G3DSA:3.40.50.300 3 250 9.5E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 SUPERFAMILY SSF52540 5 245 9.08E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 PANTHER PTHR24220:SF585 6 256 6.5E-128 T 19-04-2016 AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 SMART SM00382 29 229 2.4E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 5 258 2.4E-114 T 19-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMED_9003 59fab9e7596c3e97cbe39a3e866c47d1 258 Pfam PF00005 ABC transporter 21 176 3.6E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 SUPERFAMILY SSF51905 6 221 3.46E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 PANTHER PTHR23023 3 483 2.0E-176 T 19-04-2016 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 SUPERFAMILY SSF51905 276 460 2.01E-13 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 Gene3D G3DSA:3.50.50.60 3 211 1.1E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 Gene3D G3DSA:3.50.50.60 294 483 7.9E-16 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 5.8E-6 T 19-04-2016 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-6 T 19-04-2016 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 PANTHER PTHR23023:SF132 3 483 2.0E-176 T 19-04-2016 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 168 192 6.3E-5 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 6.3E-5 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_6989 c9b7323fd81d350123817d8d0a37e71f 491 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 9 206 1.5E-15 T 19-04-2016 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 117 127 - T 19-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 Gene3D G3DSA:3.40.50.1470 11 195 6.6E-71 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 PANTHER PTHR17224:SF1 12 196 1.3E-74 T 19-04-2016 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 Pfam PF01195 Peptidyl-tRNA hydrolase 13 193 2.6E-54 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 24 37 - T 19-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 13 195 1.3E-55 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 SUPERFAMILY SSF53178 12 195 7.46E-65 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 11 188 33.408 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMED_8240 ac70e0f38ab21dc988efddd815acbc70 197 PANTHER PTHR17224 12 196 1.3E-74 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMED_2284 3062cfe5cb7c964fbe530e2c885cbfa5 120 SUPERFAMILY SSF141734 7 108 7.98E-46 T 19-04-2016 AMED_2284 3062cfe5cb7c964fbe530e2c885cbfa5 120 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 110 30.799 T 19-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 AMED_2284 3062cfe5cb7c964fbe530e2c885cbfa5 120 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 108 3.0E-17 T 19-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 AMED_2284 3062cfe5cb7c964fbe530e2c885cbfa5 120 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 1.7E-35 T 19-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 AMED_2284 3062cfe5cb7c964fbe530e2c885cbfa5 120 PANTHER PTHR21256 1 108 2.7E-57 T 19-04-2016 AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PIRSF PIRSF000126 1 245 1.1E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 186 0.0089 T 19-04-2016 AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.7E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 5.7E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 5.7E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.7E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 5.7E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 Gene3D G3DSA:3.40.50.720 2 235 4.3E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PANTHER PTHR24322 8 134 3.2E-77 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PANTHER PTHR24322 150 182 3.2E-77 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 5.4E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 5.4E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 5.4E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 Pfam PF00106 short chain dehydrogenase 4 191 1.4E-58 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 SUPERFAMILY SSF51735 2 235 5.63E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PANTHER PTHR24322:SF392 8 134 3.2E-77 T 19-04-2016 AMED_6901 eb74267924d0400cf7a54effc0a444e8 253 PANTHER PTHR24322:SF392 150 182 3.2E-77 T 19-04-2016 AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 193 2.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 2.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 2.5E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 SUPERFAMILY SSF51735 11 296 2.91E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 Pfam PF00106 short chain dehydrogenase 17 216 2.0E-27 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 PANTHER PTHR24320:SF45 1 296 8.0E-123 T 19-04-2016 AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 Gene3D G3DSA:3.40.50.720 14 256 9.1E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3950 f1f0680430a1dbf1d8e499a514aa0be9 302 PANTHER PTHR24320 1 296 8.0E-123 T 19-04-2016 AMED_3935 89deac2aec20d009ef729cd541161967 387 PANTHER PTHR21661:SF35 5 377 1.9E-98 T 19-04-2016 AMED_3935 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 356 378 6.9E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3935 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 108 126 6.9E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3935 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 324 340 6.9E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3935 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 179 192 6.9E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3935 89deac2aec20d009ef729cd541161967 387 PRINTS PR00412 Epoxide hydrolase signature 134 149 6.9E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3935 89deac2aec20d009ef729cd541161967 387 PANTHER PTHR21661 5 377 1.9E-98 T 19-04-2016 AMED_3935 89deac2aec20d009ef729cd541161967 387 Gene3D G3DSA:3.40.50.1820 4 384 6.0E-132 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3935 89deac2aec20d009ef729cd541161967 387 PIRSF PIRSF001112 2 384 2.5E-108 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_3935 89deac2aec20d009ef729cd541161967 387 Pfam PF06441 Epoxide hydrolase N terminus 6 117 2.9E-31 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_3935 89deac2aec20d009ef729cd541161967 387 SUPERFAMILY SSF53474 3 379 1.14E-93 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 Gene3D G3DSA:3.30.390.10 2 177 3.7E-78 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 SUPERFAMILY SSF54826 3 137 3.87E-35 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 PANTHER PTHR13794 1 149 5.1E-168 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 PANTHER PTHR13794 185 434 5.1E-168 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 Gene3D G3DSA:3.20.20.120 180 424 1.9E-85 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 SMART SM00922 197 293 1.7E-24 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 35 132 4.4E-7 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 243 274 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 SUPERFAMILY SSF51604 182 427 6.81E-65 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 PANTHER PTHR13794:SF58 1 149 5.1E-168 T 19-04-2016 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 PANTHER PTHR13794:SF58 185 434 5.1E-168 T 19-04-2016 AMED_1834 1ede244ebe0253043b25324d0e3f7e6b 434 Pfam PF13378 Enolase C-terminal domain-like 200 414 5.3E-60 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 Gene3D G3DSA:3.40.47.10 258 358 5.2E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 SUPERFAMILY SSF53901 5 222 6.69E-36 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 PANTHER PTHR18919 3 383 4.6E-67 T 19-04-2016 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 SUPERFAMILY SSF53901 257 361 5.3E-23 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 PIRSF PIRSF000429 1 382 3.8E-36 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 Gene3D G3DSA:3.40.47.10 191 216 3.0E-18 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 Gene3D G3DSA:3.40.47.10 10 111 3.0E-18 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 PANTHER PTHR18919:SF8 3 383 4.6E-67 T 19-04-2016 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 Pfam PF02803 Thiolase, C-terminal domain 260 355 6.1E-6 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_3852 e82acab1a1a28ee8655627ab587d36c6 383 Pfam PF00108 Thiolase, N-terminal domain 6 170 2.5E-8 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_2884 13b03b1ea59ac7d8f08b4987674ad6d5 263 Gene3D G3DSA:1.20.120.450 6 134 1.4E-9 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_2884 13b03b1ea59ac7d8f08b4987674ad6d5 263 Pfam PF08608 Wyosine base formation 184 234 6.7E-6 T 19-04-2016 IPR013917 tRNA wybutosine-synthesis MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_2884 13b03b1ea59ac7d8f08b4987674ad6d5 263 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 11 146 3.7E-31 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_2884 13b03b1ea59ac7d8f08b4987674ad6d5 263 TIGRFAM TIGR03084 TIGR03084: TIGR03084 family protein 7 257 1.9E-104 T 19-04-2016 IPR017518 Conserved hypothetical protein CHP03084 AMED_2884 13b03b1ea59ac7d8f08b4987674ad6d5 263 SUPERFAMILY SSF109854 2 152 5.04E-36 T 19-04-2016 AMED_2884 13b03b1ea59ac7d8f08b4987674ad6d5 263 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 10 224 8.2E-49 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_8994 22188efc47adf73c7096c4ebe95c1e66 291 SUPERFAMILY SSF53613 3 276 4.83E-56 T 19-04-2016 IPR029056 Ribokinase-like AMED_8994 22188efc47adf73c7096c4ebe95c1e66 291 Gene3D G3DSA:3.40.1190.20 4 288 1.2E-63 T 19-04-2016 IPR029056 Ribokinase-like AMED_8994 22188efc47adf73c7096c4ebe95c1e66 291 PANTHER PTHR10584 8 286 1.2E-53 T 19-04-2016 AMED_8994 22188efc47adf73c7096c4ebe95c1e66 291 Pfam PF00294 pfkB family carbohydrate kinase 5 276 2.6E-39 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 PANTHER PTHR30319 2 281 1.4E-61 T 19-04-2016 AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 PANTHER PTHR30319:SF1 2 281 1.4E-61 T 19-04-2016 AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 Pfam PF08223 PaaX-like protein C-terminal domain 108 270 6.8E-48 T 19-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 Pfam PF07848 PaaX-like protein 20 86 7.7E-19 T 19-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 SUPERFAMILY SSF46785 45 101 9.28E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 Gene3D G3DSA:1.10.10.10 40 90 3.3E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8364 67f49ec16e8915eafe38e71a92c2d339 284 PIRSF PIRSF020623 7 283 9.0E-80 T 19-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 AMED_8191 1f314d72132af1921c3af3b29bd809af 345 SUPERFAMILY SSF52540 55 335 1.89E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8191 1f314d72132af1921c3af3b29bd809af 345 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 248 337 3.1E-28 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8191 1f314d72132af1921c3af3b29bd809af 345 Gene3D G3DSA:3.40.50.300 17 272 4.7E-83 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8191 1f314d72132af1921c3af3b29bd809af 345 SMART SM00382 55 248 6.4E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8191 1f314d72132af1921c3af3b29bd809af 345 Pfam PF00005 ABC transporter 47 198 9.0E-34 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8191 1f314d72132af1921c3af3b29bd809af 345 PANTHER PTHR24220 20 339 3.3E-164 T 19-04-2016 AMED_8191 1f314d72132af1921c3af3b29bd809af 345 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 250 317 8.7E-17 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8191 1f314d72132af1921c3af3b29bd809af 345 ProSitePatterns PS00211 ABC transporters family signature. 171 185 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8191 1f314d72132af1921c3af3b29bd809af 345 PANTHER PTHR24220:SF336 20 339 3.3E-164 T 19-04-2016 AMED_8968 6b699d703ac594f3270008f483a75267 390 Pfam PF03129 Anticodon binding domain 312 380 1.7E-4 T 19-04-2016 IPR004154 Anticodon-binding AMED_8968 6b699d703ac594f3270008f483a75267 390 Gene3D G3DSA:3.30.930.10 3 289 7.4E-89 T 19-04-2016 AMED_8968 6b699d703ac594f3270008f483a75267 390 Gene3D G3DSA:3.40.50.800 291 388 6.8E-15 T 19-04-2016 IPR004154 Anticodon-binding AMED_8968 6b699d703ac594f3270008f483a75267 390 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 3 386 8.2E-124 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_8968 6b699d703ac594f3270008f483a75267 390 SUPERFAMILY SSF55681 3 286 1.44E-80 T 19-04-2016 AMED_8968 6b699d703ac594f3270008f483a75267 390 SUPERFAMILY SSF52954 289 387 2.87E-14 T 19-04-2016 IPR004154 Anticodon-binding AMED_8968 6b699d703ac594f3270008f483a75267 390 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 85 288 8.8E-27 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8968 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 91 119 2.7E-44 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_8968 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 294 306 2.7E-44 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_8968 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 267 280 2.7E-44 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_8968 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 124 147 2.7E-44 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_8968 6b699d703ac594f3270008f483a75267 390 PRINTS PR01047 Threonyl-tRNA synthetase signature 224 252 2.7E-44 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMED_8968 6b699d703ac594f3270008f483a75267 390 PANTHER PTHR11451 3 389 1.0E-141 T 19-04-2016 AMED_8968 6b699d703ac594f3270008f483a75267 390 PANTHER PTHR11451:SF5 3 389 1.0E-141 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 PANTHER PTHR12526 162 387 9.9E-65 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 Gene3D G3DSA:3.40.50.2000 199 362 9.8E-28 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 Pfam PF00534 Glycosyl transferases group 1 215 363 3.3E-27 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 PANTHER PTHR12526:SF374 162 387 9.9E-65 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 SUPERFAMILY SSF53756 2 387 3.93E-61 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 PANTHER PTHR12526:SF374 2 127 9.9E-65 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 PANTHER PTHR12526 2 127 9.9E-65 T 19-04-2016 AMED_0556 fc10a25bdea8e6b2e5de9384e81beecd 389 Pfam PF13439 Glycosyltransferase Family 4 17 203 4.0E-15 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 PANTHER PTHR30055 3 186 9.8E-47 T 19-04-2016 AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 7.3E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 PANTHER PTHR30055:SF19 3 186 9.8E-47 T 19-04-2016 AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 SUPERFAMILY SSF46689 7 87 3.89E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 SUPERFAMILY SSF48498 85 187 7.05E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 Gene3D G3DSA:1.10.357.10 8 187 2.2E-42 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 6.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2488 7e1f43c7072967dff5db1d75b32fb1d6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 6.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 34 138 2.6E-29 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 SUPERFAMILY SSF54665 18 140 6.41E-40 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 603 761 1.4E-58 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 359 394 1.4E-58 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 128 190 1.3E-40 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 286 358 1.3E-40 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 162 705 5.3E-138 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 192 282 1.6E-25 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 PANTHER PTHR11908 585 760 1.8E-208 T 19-04-2016 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 PANTHER PTHR11908 13 568 1.8E-208 T 19-04-2016 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.90.1170.50 18 127 7.8E-38 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 SMART SM01008 33 139 4.5E-45 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 TIGRFAM TIGR03196 pucD: xanthine dehydrogenase D subunit 19 760 1.4E-249 T 19-04-2016 IPR017609 Xanthine dehydrogenase D subunit KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|UniPathway: UPA00604|UniPathway: UPA00604 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 SUPERFAMILY SSF56003 131 761 5.63E-151 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 PANTHER PTHR11908:SF95 585 760 1.8E-208 T 19-04-2016 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 PANTHER PTHR11908:SF95 13 568 1.8E-208 T 19-04-2016 AMED_4585 c9ac831eebff3e4fdd43d8a7be4cacf3 763 Gene3D G3DSA:3.30.365.10 453 598 4.1E-22 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_1186 c538a935af15be80a690e9d58b262c3f 984 SUPERFAMILY SSF52540 605 822 6.64E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1186 c538a935af15be80a690e9d58b262c3f 984 SUPERFAMILY SSF52540 461 576 6.64E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1186 c538a935af15be80a690e9d58b262c3f 984 Pfam PF12846 AAA-like domain 485 826 5.0E-23 T 19-04-2016 AMED_1186 c538a935af15be80a690e9d58b262c3f 984 Gene3D G3DSA:3.40.50.300 500 570 2.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1186 c538a935af15be80a690e9d58b262c3f 984 Gene3D G3DSA:3.40.50.300 733 817 2.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1186 c538a935af15be80a690e9d58b262c3f 984 Gene3D G3DSA:3.40.50.300 682 683 2.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 SUPERFAMILY SSF56770 22 308 1.96E-62 T 19-04-2016 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 281 294 7.4E-8 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 7.4E-8 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 135 149 7.4E-8 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 253 279 7.4E-8 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 229 307 5.2E-24 T 19-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 PIRSF PIRSF000310 5 336 1.3E-84 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 PANTHER PTHR30013 17 315 1.3E-45 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 33 206 5.3E-23 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 Gene3D G3DSA:3.40.50.700 21 227 3.0E-40 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMED_3781 0c7148219aebc98369c6e7f748d0382a 339 Gene3D G3DSA:4.10.480.10 229 308 3.9E-26 T 19-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AMED_3439 b62d53acaae9bbda2ced0c29e168cf9f 291 PANTHER PTHR35010:SF2 1 290 5.0E-87 T 19-04-2016 AMED_3439 b62d53acaae9bbda2ced0c29e168cf9f 291 SUPERFAMILY SSF47413 30 80 5.35E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3439 b62d53acaae9bbda2ced0c29e168cf9f 291 PANTHER PTHR35010 1 290 5.0E-87 T 19-04-2016 AMED_3439 b62d53acaae9bbda2ced0c29e168cf9f 291 Gene3D G3DSA:1.10.260.40 2 82 6.3E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3439 b62d53acaae9bbda2ced0c29e168cf9f 291 Pfam PF13560 Helix-turn-helix domain 6 86 9.1E-17 T 19-04-2016 AMED_3439 b62d53acaae9bbda2ced0c29e168cf9f 291 SMART SM00530 10 83 4.0E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8470 b0caddde1b56b6eab07e291a51e5351a 116 Pfam PF04237 YjbR 12 105 1.0E-15 T 19-04-2016 IPR007351 Uncharacterised protein YjbR AMED_8470 b0caddde1b56b6eab07e291a51e5351a 116 SUPERFAMILY SSF142906 2 112 2.75E-19 T 19-04-2016 AMED_7923 b81a2319a9bb0134393b043db705f742 256 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 28 243 1.6E-22 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7923 b81a2319a9bb0134393b043db705f742 256 PANTHER PTHR37981 1 247 4.8E-53 T 19-04-2016 AMED_7923 b81a2319a9bb0134393b043db705f742 256 Gene3D G3DSA:3.40.50.1110 22 244 4.2E-61 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7923 b81a2319a9bb0134393b043db705f742 256 PANTHER PTHR37981:SF3 1 247 4.8E-53 T 19-04-2016 AMED_7923 b81a2319a9bb0134393b043db705f742 256 SUPERFAMILY SSF52266 26 243 2.83E-55 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6585 eef9c216abd3d7c119013b09cc2ab834 255 Gene3D G3DSA:1.10.150.290 179 234 1.6E-24 T 19-04-2016 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMED_6585 eef9c216abd3d7c119013b09cc2ab834 255 PANTHER PTHR10108 2 235 3.0E-71 T 19-04-2016 AMED_6585 eef9c216abd3d7c119013b09cc2ab834 255 Pfam PF13489 Methyltransferase domain 14 180 2.5E-14 T 19-04-2016 AMED_6585 eef9c216abd3d7c119013b09cc2ab834 255 Gene3D G3DSA:3.40.50.150 5 176 4.6E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6585 eef9c216abd3d7c119013b09cc2ab834 255 SUPERFAMILY SSF53335 9 246 1.17E-28 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6585 eef9c216abd3d7c119013b09cc2ab834 255 PANTHER PTHR10108:SF808 2 235 3.0E-71 T 19-04-2016 AMED_3156 e108b652e02458ae0c66f0988a585a49 398 PANTHER PTHR23501 1 392 3.5E-144 T 19-04-2016 AMED_3156 e108b652e02458ae0c66f0988a585a49 398 Pfam PF07690 Major Facilitator Superfamily 8 311 2.7E-39 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3156 e108b652e02458ae0c66f0988a585a49 398 Gene3D G3DSA:1.20.1250.20 197 373 1.9E-16 T 19-04-2016 AMED_3156 e108b652e02458ae0c66f0988a585a49 398 SUPERFAMILY SSF103473 4 375 7.19E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3156 e108b652e02458ae0c66f0988a585a49 398 PANTHER PTHR23501:SF4 1 392 3.5E-144 T 19-04-2016 AMED_3156 e108b652e02458ae0c66f0988a585a49 398 Gene3D G3DSA:1.20.1250.20 5 181 6.7E-27 T 19-04-2016 AMED_3408 4e2def1b8354ae21e9f381b83f4ed384 308 PANTHER PTHR30193 6 306 4.3E-80 T 19-04-2016 AMED_3408 4e2def1b8354ae21e9f381b83f4ed384 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 305 4.1E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3408 4e2def1b8354ae21e9f381b83f4ed384 308 PANTHER PTHR30193:SF6 6 306 4.3E-80 T 19-04-2016 AMED_3408 4e2def1b8354ae21e9f381b83f4ed384 308 Gene3D G3DSA:1.10.3720.10 80 306 2.7E-56 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3408 4e2def1b8354ae21e9f381b83f4ed384 308 SUPERFAMILY SSF161098 78 295 6.8E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 419 520 4.5E-24 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 Gene3D G3DSA:3.30.565.10 359 521 9.2E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF00672 HAMP domain 189 255 1.5E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 SUPERFAMILY SSF47384 289 369 1.96E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 SMART SM00388 303 371 3.9E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 SMART SM00387 412 522 3.6E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PANTHER PTHR24423:SF518 10 21 2.4E-75 T 19-04-2016 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PANTHER PTHR24423:SF518 282 522 2.4E-75 T 19-04-2016 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 9.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 464 9.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 9.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 SMART SM00304 208 260 1.3E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 SUPERFAMILY SSF55874 360 520 1.7E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 Gene3D G3DSA:1.10.287.130 295 358 4.9E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF05227 CHASE3 domain 57 161 9.9E-12 T 19-04-2016 IPR007891 CHASE3 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 SUPERFAMILY SSF158472 209 256 2.48E-5 T 19-04-2016 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 Pfam PF00512 His Kinase A (phospho-acceptor) domain 304 369 9.3E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PANTHER PTHR24423 10 21 2.4E-75 T 19-04-2016 AMED_7594 e19897a1c973068cdc562b39712bb6dd 547 PANTHER PTHR24423 282 522 2.4E-75 T 19-04-2016 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 SUPERFAMILY SSF69593 32 224 2.75E-28 T 19-04-2016 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 Pfam PF01553 Acyltransferase 46 169 2.8E-18 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 PANTHER PTHR10434:SF21 12 181 2.8E-24 T 19-04-2016 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 PANTHER PTHR10434:SF21 199 241 2.8E-24 T 19-04-2016 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 PANTHER PTHR10434 12 181 2.8E-24 T 19-04-2016 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 PANTHER PTHR10434 199 241 2.8E-24 T 19-04-2016 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 SMART SM00563 53 173 1.9E-29 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_6292 e1ca7d3f96b83ba4ff53bfa7560bf769 275 Gene3D G3DSA:3.40.1130.10 19 176 1.7E-7 T 19-04-2016 AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 70 4.3E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 Gene3D G3DSA:1.10.10.10 7 77 1.2E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 Pfam PF07729 FCD domain 86 221 2.5E-9 T 19-04-2016 IPR011711 GntR, C-terminal AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 SMART SM00895 86 227 0.0028 T 19-04-2016 IPR011711 GntR, C-terminal AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 PANTHER PTHR11751 16 102 4.1E-18 T 19-04-2016 AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 SUPERFAMILY SSF48008 84 226 4.97E-8 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 Gene3D G3DSA:1.20.120.530 83 226 1.6E-11 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 SUPERFAMILY SSF46785 11 80 3.5E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5384 ce3c2bdeae53586adcb1253ed70e0803 242 SMART SM00345 18 76 1.7E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1433 f5f0f54683d93ce3a57b981af805bb47 177 Pfam PF03029 Conserved hypothetical ATP binding protein 2 167 2.7E-21 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_1433 f5f0f54683d93ce3a57b981af805bb47 177 PANTHER PTHR11711:SF117 1 166 5.2E-58 T 19-04-2016 AMED_1433 f5f0f54683d93ce3a57b981af805bb47 177 Gene3D G3DSA:3.40.50.300 1 167 3.1E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1433 f5f0f54683d93ce3a57b981af805bb47 177 PANTHER PTHR11711 1 166 5.2E-58 T 19-04-2016 AMED_1433 f5f0f54683d93ce3a57b981af805bb47 177 SUPERFAMILY SSF52540 1 167 4.48E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8342 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:1.20.1050.60 354 445 8.7E-26 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:3.30.2080.10 625 773 1.1E-50 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:1.20.1610.10 451 624 1.9E-48 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 SUPERFAMILY SSF48208 270 745 5.95E-20 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 Pfam PF07971 Glycosyl hydrolase family 92 247 763 6.2E-147 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 Gene3D G3DSA:2.70.98.10 33 328 3.7E-101 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 PANTHER PTHR12143:SF22 394 805 1.7E-129 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 PANTHER PTHR12143:SF22 12 378 1.7E-129 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 PANTHER PTHR12143 394 805 1.7E-129 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 PANTHER PTHR12143 12 378 1.7E-129 T 19-04-2016 AMED_8342 2f37d22043406bd04903eb88e618c715 1078 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 15 767 2.9E-166 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_3286 df644879d563f8e35b4e42963c607a96 453 PANTHER PTHR22925:SF37 23 192 4.4E-134 T 19-04-2016 AMED_3286 df644879d563f8e35b4e42963c607a96 453 PANTHER PTHR22925:SF37 208 354 4.4E-134 T 19-04-2016 AMED_3286 df644879d563f8e35b4e42963c607a96 453 Gene3D G3DSA:2.115.10.20 18 309 1.2E-77 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3286 df644879d563f8e35b4e42963c607a96 453 Gene3D G3DSA:2.60.120.260 323 451 3.7E-49 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3286 df644879d563f8e35b4e42963c607a96 453 SMART SM00606 324 453 3.9E-47 T 19-04-2016 IPR006584 Cellulose binding, type IV GO:0030246 AMED_3286 df644879d563f8e35b4e42963c607a96 453 SUPERFAMILY SSF75005 16 309 1.57E-67 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3286 df644879d563f8e35b4e42963c607a96 453 PANTHER PTHR22925 208 354 4.4E-134 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3286 df644879d563f8e35b4e42963c607a96 453 PANTHER PTHR22925 23 192 4.4E-134 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3286 df644879d563f8e35b4e42963c607a96 453 Pfam PF04616 Glycosyl hydrolases family 43 28 308 8.4E-53 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3286 df644879d563f8e35b4e42963c607a96 453 Pfam PF03422 Carbohydrate binding module (family 6) 332 452 3.4E-41 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_3286 df644879d563f8e35b4e42963c607a96 453 SUPERFAMILY SSF49785 324 451 1.34E-36 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 SMART SM00458 508 635 6.6E-24 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:3.20.20.70 35 313 8.3E-93 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 31 50 1.0E-23 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 275 296 1.0E-23 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 108 129 1.0E-23 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 254 273 1.0E-23 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PRINTS PR00740 Glycosyl hydrolase family 27 signature 67 82 1.0E-23 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:2.60.40.1180 314 411 1.2E-24 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 SUPERFAMILY SSF50370 503 633 2.65E-37 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 Pfam PF16499 Alpha galactosidase A 37 365 3.6E-58 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 Gene3D G3DSA:2.80.10.50 512 633 2.6E-37 T 19-04-2016 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 SUPERFAMILY SSF51011 314 409 4.89E-11 T 19-04-2016 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PANTHER PTHR11452:SF12 37 408 7.3E-119 T 19-04-2016 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 SUPERFAMILY SSF51445 35 320 4.48E-71 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 PANTHER PTHR11452 37 408 7.3E-119 T 19-04-2016 AMED_3405 6b28e0ae839b9630779712e9facc09c8 635 Pfam PF00652 Ricin-type beta-trefoil lectin domain 511 632 6.8E-25 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1518 3f24bb4f1bd843fa624c525bb18abc04 339 Pfam PF00348 Polyprenyl synthetase 60 286 9.3E-52 T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_1518 3f24bb4f1bd843fa624c525bb18abc04 339 SUPERFAMILY SSF48576 39 338 2.72E-73 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_1518 3f24bb4f1bd843fa624c525bb18abc04 339 Gene3D G3DSA:1.10.600.10 58 338 1.5E-80 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_1518 3f24bb4f1bd843fa624c525bb18abc04 339 PANTHER PTHR12001:SF51 28 339 7.6E-108 T 19-04-2016 AMED_1518 3f24bb4f1bd843fa624c525bb18abc04 339 PANTHER PTHR12001 28 339 7.6E-108 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMED_1518 3f24bb4f1bd843fa624c525bb18abc04 339 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 99 113 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_4821 8224b140ce7063e4848ad19d068be9a0 140 PANTHER PTHR33164:SF11 4 132 1.4E-20 T 19-04-2016 AMED_4821 8224b140ce7063e4848ad19d068be9a0 140 Pfam PF12802 MarR family 30 85 2.2E-9 T 19-04-2016 AMED_4821 8224b140ce7063e4848ad19d068be9a0 140 Gene3D G3DSA:1.10.10.10 8 134 6.1E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4821 8224b140ce7063e4848ad19d068be9a0 140 SUPERFAMILY SSF46785 9 134 1.34E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4821 8224b140ce7063e4848ad19d068be9a0 140 SMART SM00347 25 123 2.9E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4821 8224b140ce7063e4848ad19d068be9a0 140 PANTHER PTHR33164 4 132 1.4E-20 T 19-04-2016 AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 2.8E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 PANTHER PTHR30055 3 113 5.3E-19 T 19-04-2016 AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 Pfam PF13305 WHG domain 93 191 5.0E-6 T 19-04-2016 IPR025996 WHG domain AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 SUPERFAMILY SSF48498 91 214 1.71E-22 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 PANTHER PTHR30055:SF78 3 113 5.3E-19 T 19-04-2016 AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 SUPERFAMILY SSF46689 8 81 2.0E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3665 5b3cfbab841d00c58f9864687191bc17 226 Gene3D G3DSA:1.10.357.10 3 219 5.8E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1838 9a9085750481dc25f0890215dd607ade 337 PANTHER PTHR32196:SF21 17 330 1.8E-61 T 19-04-2016 AMED_1838 9a9085750481dc25f0890215dd607ade 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 325 1.1E-42 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_1838 9a9085750481dc25f0890215dd607ade 337 PANTHER PTHR32196 17 330 1.8E-61 T 19-04-2016 AMED_7527 adbb54c35bc67c12f5da01effb7df883 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 66 3.5E-19 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7527 adbb54c35bc67c12f5da01effb7df883 72 Gene3D G3DSA:1.10.260.40 1 67 2.7E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7527 adbb54c35bc67c12f5da01effb7df883 72 SMART SM00530 6 62 3.2E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7527 adbb54c35bc67c12f5da01effb7df883 72 SUPERFAMILY SSF47413 1 66 2.94E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7527 adbb54c35bc67c12f5da01effb7df883 72 PANTHER PTHR37301 2 67 1.6E-30 T 19-04-2016 AMED_4792 df3be9978f2eb341aa345049c4296ea9 395 Pfam PF01547 Bacterial extracellular solute-binding protein 3 165 1.6E-8 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_4792 df3be9978f2eb341aa345049c4296ea9 395 SUPERFAMILY SSF53850 8 365 2.29E-27 T 19-04-2016 AMED_4792 df3be9978f2eb341aa345049c4296ea9 395 Gene3D G3DSA:3.40.190.10 7 111 2.6E-14 T 19-04-2016 AMED_4792 df3be9978f2eb341aa345049c4296ea9 395 Gene3D G3DSA:3.40.190.10 282 329 2.6E-14 T 19-04-2016 AMED_4792 df3be9978f2eb341aa345049c4296ea9 395 Gene3D G3DSA:3.40.190.10 112 281 1.5E-13 T 19-04-2016 AMED_5774 829eb2fc4c86ec6742e9ef60d067d04e 726 PANTHER PTHR34987 222 686 2.3E-66 T 19-04-2016 AMED_5774 829eb2fc4c86ec6742e9ef60d067d04e 726 Pfam PF05592 Bacterial alpha-L-rhamnosidase 222 519 2.7E-14 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_5774 829eb2fc4c86ec6742e9ef60d067d04e 726 Pfam PF05592 Bacterial alpha-L-rhamnosidase 586 683 7.5E-16 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_5774 829eb2fc4c86ec6742e9ef60d067d04e 726 SUPERFAMILY SSF48208 257 687 3.0E-42 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_8681 5314a168a4b17092be004ebf388fd68c 131 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 89 1.4E-18 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8681 5314a168a4b17092be004ebf388fd68c 131 PANTHER PTHR35176 5 90 2.5E-14 T 19-04-2016 AMED_8681 5314a168a4b17092be004ebf388fd68c 131 SUPERFAMILY SSF50475 5 128 3.39E-28 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8681 5314a168a4b17092be004ebf388fd68c 131 Gene3D G3DSA:2.30.110.10 5 128 1.3E-30 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8681 5314a168a4b17092be004ebf388fd68c 131 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 9 127 2.2E-39 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_1624 54030056e0ffc932aa8434caab376e0c 191 Pfam PF03551 Transcriptional regulator PadR-like family 14 88 6.8E-12 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_1624 54030056e0ffc932aa8434caab376e0c 191 PANTHER PTHR33169 7 181 1.5E-15 T 19-04-2016 AMED_1624 54030056e0ffc932aa8434caab376e0c 191 SUPERFAMILY SSF46785 10 182 7.53E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1624 54030056e0ffc932aa8434caab376e0c 191 Gene3D G3DSA:1.10.10.10 4 95 1.2E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2583 0e1e065592a4f41016d7cca313173073 257 SMART SM00382 30 220 2.7E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2583 0e1e065592a4f41016d7cca313173073 257 Pfam PF00005 ABC transporter 21 172 1.6E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2583 0e1e065592a4f41016d7cca313173073 257 SUPERFAMILY SSF52540 3 231 5.11E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2583 0e1e065592a4f41016d7cca313173073 257 PANTHER PTHR24220 7 225 6.1E-100 T 19-04-2016 AMED_2583 0e1e065592a4f41016d7cca313173073 257 Gene3D G3DSA:3.40.50.300 2 232 1.2E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2583 0e1e065592a4f41016d7cca313173073 257 PANTHER PTHR24220:SF575 7 225 6.1E-100 T 19-04-2016 AMED_4488 a08c6fda2a98720e8b47430fbfbd0653 329 Gene3D G3DSA:3.40.50.620 160 278 7.3E-26 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4488 a08c6fda2a98720e8b47430fbfbd0653 329 Pfam PF02698 DUF218 domain 160 301 2.0E-33 T 19-04-2016 IPR003848 Domain of unknown function DUF218 AMED_4488 a08c6fda2a98720e8b47430fbfbd0653 329 PANTHER PTHR30336 41 319 8.4E-48 T 19-04-2016 AMED_4488 a08c6fda2a98720e8b47430fbfbd0653 329 PANTHER PTHR30336:SF2 41 319 8.4E-48 T 19-04-2016 AMED_0482 763d50175608505e525a19d1cae597b5 510 Pfam PF02602 Uroporphyrinogen-III synthase HemD 252 482 1.8E-65 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0482 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.40.50.10090 372 489 4.4E-35 T 19-04-2016 AMED_0482 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.40.50.10090 244 365 1.1E-38 T 19-04-2016 AMED_0482 763d50175608505e525a19d1cae597b5 510 SUPERFAMILY SSF69618 238 489 3.01E-70 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0482 763d50175608505e525a19d1cae597b5 510 PANTHER PTHR21091:SF128 1 376 9.6E-58 T 19-04-2016 AMED_0482 763d50175608505e525a19d1cae597b5 510 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 14 28 - T 19-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_0482 763d50175608505e525a19d1cae597b5 510 SUPERFAMILY SSF53790 5 241 1.09E-41 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_0482 763d50175608505e525a19d1cae597b5 510 PANTHER PTHR21091 1 376 9.6E-58 T 19-04-2016 AMED_0482 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.40.1010.10 8 116 2.4E-29 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_0482 763d50175608505e525a19d1cae597b5 510 Gene3D G3DSA:3.30.950.10 117 243 9.5E-27 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_0482 763d50175608505e525a19d1cae597b5 510 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 203 1.7E-34 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 TIGRFAM TIGR03550 F420_cofG: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit 72 396 8.4E-147 T 19-04-2016 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198|UniPathway: UPA00072 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 PANTHER PTHR22976:SF22 451 864 1.8E-226 T 19-04-2016 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 Hamap MF_01611 FO synthase subunit 1 [cofG]. 71 398 49.969 T 19-04-2016 IPR019939 CofG family GO:0009108|GO:0016765|GO:0051539 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198|UniPathway: UPA00072 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 TIGRFAM TIGR03551 F420_cofH: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit 490 838 2.6E-153 T 19-04-2016 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198|UniPathway: UPA00072 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 Hamap MF_01612 FO synthase subunit 2 [cofH]. 476 841 47.315 T 19-04-2016 IPR019940 CofH family GO:0016765 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198|UniPathway: UPA00072 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 SUPERFAMILY SSF102114 488 832 5.62E-44 T 19-04-2016 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 SMART SM00729 75 308 1.6E-6 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 PANTHER PTHR22976 451 864 1.8E-226 T 19-04-2016 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 Pfam PF04055 Radical SAM superfamily 532 706 5.5E-15 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 Pfam PF04055 Radical SAM superfamily 79 257 4.2E-11 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 524 837 8.6E-105 T 19-04-2016 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77|MetaCyc: PWY-5198|UniPathway: UPA00072 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 Gene3D G3DSA:3.20.20.70 489 832 1.1E-69 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 Gene3D G3DSA:3.20.20.70 29 362 6.8E-67 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6904 4f4fc50e4f9d4078426728c731674261 868 SUPERFAMILY SSF102114 43 372 3.14E-37 T 19-04-2016 AMED_2044 7e55f6e6afddc10f5c2b49381d9fe669 283 PIRSF PIRSF021603 2 283 3.4E-119 T 19-04-2016 IPR016794 Uncharacterised conserved protein UCP21603, acetyltransferase-like AMED_2044 7e55f6e6afddc10f5c2b49381d9fe669 283 Pfam PF13312 Domain of unknown function (DUF4081) 47 155 1.3E-40 T 19-04-2016 IPR025289 Domain of unknown function DUF4081 AMED_2044 7e55f6e6afddc10f5c2b49381d9fe669 283 Gene3D G3DSA:3.40.630.30 124 278 1.2E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2044 7e55f6e6afddc10f5c2b49381d9fe669 283 SUPERFAMILY SSF55729 77 278 1.8E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2044 7e55f6e6afddc10f5c2b49381d9fe669 283 Pfam PF00583 Acetyltransferase (GNAT) family 198 273 1.1E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2490 a9f65864bac189acb7aa4308fb7b7d05 140 Pfam PF04341 Protein of unknown function, DUF485 43 129 1.7E-31 T 19-04-2016 IPR007436 Protein of unknown function DUF485 AMED_2490 a9f65864bac189acb7aa4308fb7b7d05 140 SUPERFAMILY SSF103473 44 120 7.19E-5 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2490 a9f65864bac189acb7aa4308fb7b7d05 140 PANTHER PTHR38441:SF1 16 137 2.1E-27 T 19-04-2016 AMED_2490 a9f65864bac189acb7aa4308fb7b7d05 140 PANTHER PTHR38441 16 137 2.1E-27 T 19-04-2016 AMED_7911 faa0625f12b37d72aedb754c9b4fb358 247 SUPERFAMILY SSF47413 3 62 6.28E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7911 faa0625f12b37d72aedb754c9b4fb358 247 Gene3D G3DSA:1.10.260.40 3 56 1.3E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF16542 PNKP adenylyltransferase domain, ligase domain 456 767 9.3E-144 T 19-04-2016 IPR032380 Polynucleotide kinase-phosphatase, ligase domain AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF56091 503 595 1.55E-13 T 19-04-2016 AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF56091 634 738 1.55E-13 T 19-04-2016 AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF56300 146 404 1.68E-42 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF00149 Calcineurin-like phosphoesterase 181 364 1.2E-9 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 TIGRFAM TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase 2 830 0.0 T 19-04-2016 IPR024028 Polynucleotide kinase-phosphatase, bacterial AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 SUPERFAMILY SSF52540 3 133 2.34E-14 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF13671 AAA domain 10 135 2.6E-22 T 19-04-2016 AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 Pfam PF16536 PNKP adenylyltransferase domain, C-terminal region 771 830 1.7E-32 T 19-04-2016 IPR032390 Polynucleotide kinase-phosphatase, C-terminal AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 PANTHER PTHR24032 166 413 3.6E-50 T 19-04-2016 AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 Gene3D G3DSA:3.60.21.10 178 413 5.8E-54 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8088 e43c562c312bd75fc33ae5bdb293ae14 830 Gene3D G3DSA:3.40.50.300 9 137 5.1E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 SUPERFAMILY SSF55874 3 74 1.96E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 SMART SM00387 1 76 2.3E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 Gene3D G3DSA:3.30.565.10 5 73 3.1E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 8 74 7.3E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 PRINTS PR00344 Bacterial sensor protein C-terminal signature 40 58 5.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 PRINTS PR00344 Bacterial sensor protein C-terminal signature 23 33 5.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 PRINTS PR00344 Bacterial sensor protein C-terminal signature 5 19 5.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7941 3adc67c1e9dafaf0417e0f634838bbe2 78 PANTHER PTHR24423 8 73 2.0E-22 T 19-04-2016 AMED_0758 e6ef166b5eeee5aa00dcc94781a3ec88 135 SMART SM00226 4 129 1.7E-40 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_0758 e6ef166b5eeee5aa00dcc94781a3ec88 135 SUPERFAMILY SSF52788 4 127 3.14E-36 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_0758 e6ef166b5eeee5aa00dcc94781a3ec88 135 Gene3D G3DSA:3.40.50.270 3 127 1.0E-40 T 19-04-2016 AMED_0758 e6ef166b5eeee5aa00dcc94781a3ec88 135 PANTHER PTHR11717:SF18 2 132 4.0E-35 T 19-04-2016 AMED_0758 e6ef166b5eeee5aa00dcc94781a3ec88 135 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 127 9.5E-23 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_0758 e6ef166b5eeee5aa00dcc94781a3ec88 135 PANTHER PTHR11717 2 132 4.0E-35 T 19-04-2016 AMED_1614 242833bda5dac8a233c1cbf0dada287f 259 PANTHER PTHR11941:SF93 3 256 5.4E-103 T 19-04-2016 AMED_1614 242833bda5dac8a233c1cbf0dada287f 259 SUPERFAMILY SSF52096 3 255 1.35E-80 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_1614 242833bda5dac8a233c1cbf0dada287f 259 Gene3D G3DSA:3.90.226.10 3 249 7.9E-84 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_1614 242833bda5dac8a233c1cbf0dada287f 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 251 3.3E-66 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_1614 242833bda5dac8a233c1cbf0dada287f 259 PANTHER PTHR11941 3 256 5.4E-103 T 19-04-2016 AMED_0857 cbda1c4d4ff7758d0e9e23ad603b2d4a 363 PANTHER PTHR32196 8 351 2.2E-81 T 19-04-2016 AMED_0857 cbda1c4d4ff7758d0e9e23ad603b2d4a 363 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 326 1.6E-32 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_0857 cbda1c4d4ff7758d0e9e23ad603b2d4a 363 PANTHER PTHR32196:SF30 8 351 2.2E-81 T 19-04-2016 AMED_2427 1b725ed6f736e1c73956014c12ee115b 283 PANTHER PTHR30188:SF1 14 283 3.1E-131 T 19-04-2016 AMED_2427 1b725ed6f736e1c73956014c12ee115b 283 Pfam PF02405 Permease MlaE 67 270 1.0E-58 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_2427 1b725ed6f736e1c73956014c12ee115b 283 PANTHER PTHR30188 14 283 3.1E-131 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 Pfam PF00512 His Kinase A (phospho-acceptor) domain 307 373 7.7E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PANTHER PTHR24423 19 45 1.9E-142 T 19-04-2016 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PANTHER PTHR24423 240 533 1.9E-142 T 19-04-2016 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 420 529 2.5E-18 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 Pfam PF00672 HAMP domain 226 295 9.9E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 469 8.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 483 8.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 490 508 8.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 527 8.7E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 SUPERFAMILY SSF158472 246 296 8.24E-8 T 19-04-2016 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 SUPERFAMILY SSF55874 363 528 7.07E-41 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 SMART SM00387 419 530 8.7E-32 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 SMART SM00388 306 373 1.6E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 SUPERFAMILY SSF47384 290 373 2.55E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 Gene3D G3DSA:3.30.565.10 361 530 2.0E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PANTHER PTHR24423:SF500 19 45 1.9E-142 T 19-04-2016 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 PANTHER PTHR24423:SF500 240 533 1.9E-142 T 19-04-2016 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 SMART SM00304 246 298 2.0E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7992 c34d04d6836f42bbe9bacc0c27f2da26 574 Gene3D G3DSA:1.10.287.130 298 360 8.3E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 PANTHER PTHR22594:SF18 25 336 4.6E-113 T 19-04-2016 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 Pfam PF00152 tRNA synthetases class II (D, K and N) 22 330 5.8E-59 T 19-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 SUPERFAMILY SSF55681 24 330 2.67E-59 T 19-04-2016 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 PANTHER PTHR22594 25 336 4.6E-113 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 Gene3D G3DSA:3.30.930.10 22 332 6.4E-73 T 19-04-2016 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 99 112 9.9E-6 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 251 267 9.9E-6 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 291 305 9.9E-6 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_4751 f6aae630c0bb15dc3152a7120d29f032 336 PRINTS PR01042 Aspartyl-tRNA synthetase signature 83 95 9.9E-6 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_0291 05d545fda5a8f9c6be6d1a0ce7e509c0 102 Pfam PF02467 Transcription factor WhiB 17 87 6.3E-23 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_0291 05d545fda5a8f9c6be6d1a0ce7e509c0 102 PANTHER PTHR38839 1 99 1.5E-34 T 19-04-2016 AMED_0291 05d545fda5a8f9c6be6d1a0ce7e509c0 102 PANTHER PTHR38839:SF1 1 99 1.5E-34 T 19-04-2016 AMED_0291 05d545fda5a8f9c6be6d1a0ce7e509c0 102 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 97 16.334 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_7423 00778c9ab78a1b91995e1588f896412f 123 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 16 118 8.5E-18 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_7423 00778c9ab78a1b91995e1588f896412f 123 Gene3D G3DSA:3.30.750.24 17 122 1.5E-21 T 19-04-2016 IPR002645 STAS domain AMED_7423 00778c9ab78a1b91995e1588f896412f 123 PANTHER PTHR33495 2 122 1.2E-19 T 19-04-2016 AMED_7423 00778c9ab78a1b91995e1588f896412f 123 Pfam PF13466 STAS domain 29 109 9.4E-11 T 19-04-2016 IPR002645 STAS domain AMED_7423 00778c9ab78a1b91995e1588f896412f 123 PANTHER PTHR33495:SF2 2 122 1.2E-19 T 19-04-2016 AMED_7423 00778c9ab78a1b91995e1588f896412f 123 SUPERFAMILY SSF52091 17 122 1.88E-17 T 19-04-2016 IPR002645 STAS domain AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 Gene3D G3DSA:3.40.50.261 224 376 1.5E-48 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 Pfam PF00549 CoA-ligase 248 368 9.9E-13 T 19-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 PIRSF PIRSF001554 1 379 1.9E-129 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 375 6.5E-116 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 Gene3D G3DSA:3.30.1490.20 22 86 4.4E-17 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 PANTHER PTHR11815 1 380 1.3E-153 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 Pfam PF08442 ATP-grasp domain 2 189 7.7E-62 T 19-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 Gene3D G3DSA:3.30.470.20 87 218 1.3E-43 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 SUPERFAMILY SSF52210 223 375 8.77E-38 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 SUPERFAMILY SSF56059 1 217 4.24E-61 T 19-04-2016 AMED_4570 36db18137ee8ecbe6b90035e18e38cde 380 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 377 37.01 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_6777 90c50e226bcb94dfb7b5b9614f534a39 216 Gene3D G3DSA:3.40.50.880 1 214 8.6E-42 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6777 90c50e226bcb94dfb7b5b9614f534a39 216 Pfam PF06283 Trehalose utilisation 2 209 7.5E-77 T 19-04-2016 IPR029010 ThuA-like domain AMED_6777 90c50e226bcb94dfb7b5b9614f534a39 216 PANTHER PTHR40469:SF1 1 210 7.9E-55 T 19-04-2016 AMED_6777 90c50e226bcb94dfb7b5b9614f534a39 216 SUPERFAMILY SSF52317 1 213 1.99E-48 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6777 90c50e226bcb94dfb7b5b9614f534a39 216 PANTHER PTHR40469 1 210 7.9E-55 T 19-04-2016 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 PIRSF PIRSF015601 7 249 4.3E-50 T 19-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 SUPERFAMILY SSF88697 8 63 2.09E-9 T 19-04-2016 IPR015947 PUA-like domain AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 Gene3D G3DSA:2.40.240.20 9 76 3.5E-15 T 19-04-2016 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 Pfam PF04452 RNA methyltransferase 21 242 1.6E-55 T 19-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 PANTHER PTHR30027 17 250 4.0E-55 T 19-04-2016 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 PANTHER PTHR30027:SF3 17 250 4.0E-55 T 19-04-2016 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 Gene3D G3DSA:3.40.1280.10 80 249 4.7E-49 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 20 245 5.9E-37 T 19-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMED_6627 93ae2ea5737d3559f97c5b6f2d939056 250 SUPERFAMILY SSF75217 79 249 2.35E-42 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 SMART SM00422 18 87 3.9E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 Gene3D G3DSA:1.10.1660.10 19 126 2.7E-15 T 19-04-2016 AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 Gene3D G3DSA:3.40.50.280 184 263 5.3E-6 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 Pfam PF13411 MerR HTH family regulatory protein 20 80 4.3E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 SUPERFAMILY SSF52242 179 264 8.01E-10 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 SUPERFAMILY SSF46955 18 112 5.04E-15 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4083 87455e446d4dcdcca304f69dad6ed2b4 296 PANTHER PTHR30204 10 112 1.3E-14 T 19-04-2016 AMED_2718 a8deafafb395361f93a09f40545245c5 219 PANTHER PTHR30055:SF24 3 217 2.6E-61 T 19-04-2016 AMED_2718 a8deafafb395361f93a09f40545245c5 219 PANTHER PTHR30055 3 217 2.6E-61 T 19-04-2016 AMED_2718 a8deafafb395361f93a09f40545245c5 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 1.4E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2718 a8deafafb395361f93a09f40545245c5 219 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_2718 a8deafafb395361f93a09f40545245c5 219 SUPERFAMILY SSF46689 3 72 1.8E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2718 a8deafafb395361f93a09f40545245c5 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.1E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2718 a8deafafb395361f93a09f40545245c5 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.1E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2718 a8deafafb395361f93a09f40545245c5 219 SUPERFAMILY SSF48498 78 217 1.11E-46 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2718 a8deafafb395361f93a09f40545245c5 219 Gene3D G3DSA:1.10.357.10 3 191 2.7E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 Pfam PF00331 Glycosyl hydrolase family 10 15 314 1.6E-100 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 PANTHER PTHR31490 4 312 7.1E-123 T 19-04-2016 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 SUPERFAMILY SSF51445 11 315 5.09E-111 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 Gene3D G3DSA:3.20.20.80 14 315 8.1E-110 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 SMART SM00633 53 315 4.3E-101 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 PRINTS PR00134 Glycosyl hydrolase family 10 signature 126 137 2.4E-18 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 PRINTS PR00134 Glycosyl hydrolase family 10 signature 199 211 2.4E-18 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 PRINTS PR00134 Glycosyl hydrolase family 10 signature 84 96 2.4E-18 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_4514 039a99abf1c7ff14132cd43c0667b428 317 PRINTS PR00134 Glycosyl hydrolase family 10 signature 170 181 2.4E-18 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 PANTHER PTHR26402 5 227 4.2E-91 T 19-04-2016 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 SMART SM00862 148 224 4.0E-29 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 SUPERFAMILY SSF52172 5 180 7.55E-43 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 1.3E-28 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 Gene3D G3DSA:1.10.10.10 127 227 4.8E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 PANTHER PTHR26402:SF50 5 227 4.2E-91 T 19-04-2016 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 Pfam PF00072 Response regulator receiver domain 7 115 2.4E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 Gene3D G3DSA:3.40.50.2300 5 126 2.3E-40 T 19-04-2016 AMED_5726 f7f5146909652ceb86082b0e95c97b10 228 SMART SM00448 5 115 1.3E-40 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6025 555d9cca0f923def53d5df567114ea37 147 PANTHER PTHR33164 3 145 5.7E-23 T 19-04-2016 AMED_6025 555d9cca0f923def53d5df567114ea37 147 SMART SM00347 28 131 5.9E-14 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6025 555d9cca0f923def53d5df567114ea37 147 Gene3D G3DSA:1.10.10.10 4 143 4.1E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6025 555d9cca0f923def53d5df567114ea37 147 PANTHER PTHR33164:SF1 3 145 5.7E-23 T 19-04-2016 AMED_6025 555d9cca0f923def53d5df567114ea37 147 Pfam PF12802 MarR family 33 94 1.6E-12 T 19-04-2016 AMED_6025 555d9cca0f923def53d5df567114ea37 147 SUPERFAMILY SSF46785 6 143 6.82E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Pfam PF04561 RNA polymerase Rpb2, domain 2 174 370 1.5E-30 T 19-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 PANTHER PTHR20856:SF20 4 58 0.0 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 PANTHER PTHR20856:SF20 960 1132 0.0 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Pfam PF04560 RNA polymerase Rpb2, domain 7 1052 1126 6.7E-27 T 19-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Pfam PF10385 RNA polymerase beta subunit external 1 domain 507 573 2.4E-25 T 19-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 248 847 6.1E-304 T 19-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 32 1128 12.259 T 19-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Pfam PF00562 RNA polymerase Rpb2, domain 6 634 1050 1.6E-158 T 19-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Pfam PF04563 RNA polymerase beta subunit 46 415 2.0E-22 T 19-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:2.40.50.150 738 869 2.4E-57 T 19-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 PANTHER PTHR20856 960 1132 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 ProSitePatterns PS01166 RNA polymerases beta chain signature. 873 885 - T 19-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:2.30.150.10 508 573 3.5E-27 T 19-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:2.40.50.100 632 702 3.5E-27 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 PANTHER PTHR20856 4 58 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:2.40.270.10 703 730 2.2E-75 T 19-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:2.40.270.10 870 1028 2.2E-75 T 19-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Pfam PF04565 RNA polymerase Rpb2, domain 3 429 497 7.0E-28 T 19-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 PANTHER PTHR20856:SF20 76 938 0.0 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 PANTHER PTHR20856 76 938 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 SUPERFAMILY SSF64484 31 1139 0.0 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:3.90.1100.10 359 507 2.6E-143 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:3.90.1100.10 576 630 2.6E-143 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:3.90.1100.10 39 174 2.6E-143 T 19-04-2016 AMED_0656 3af90b72a52f2a847930698a489c7995 1167 Gene3D G3DSA:3.90.1110.10 176 345 4.1E-67 T 19-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 PIRSF PIRSF001259 22 430 9.5E-178 T 19-04-2016 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 SUPERFAMILY SSF55821 26 229 1.49E-82 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 23 419 55.371 T 19-04-2016 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 28 221 4.8E-87 T 19-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 SUPERFAMILY SSF142695 228 400 3.92E-69 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 Pfam PF00925 GTP cyclohydrolase II 230 397 3.7E-69 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 Gene3D G3DSA:3.90.870.10 23 234 3.0E-97 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 230 420 2.5E-70 T 19-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 26 222 1.3E-75 T 19-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 PANTHER PTHR21327 25 421 1.7E-237 T 19-04-2016 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 227 423 40.347 T 19-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_2773 8d0a292a26ebf43c9e99077f94fe4c44 442 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 22 226 38.992 T 19-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 Pfam PF05199 GMC oxidoreductase 397 530 6.6E-37 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:3.50.50.60 9 135 5.6E-106 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:3.50.50.60 197 320 5.6E-106 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 Gene3D G3DSA:3.50.50.60 475 539 5.6E-106 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 SUPERFAMILY SSF51905 481 539 6.24E-77 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 SUPERFAMILY SSF51905 9 295 6.24E-77 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 SUPERFAMILY SSF54373 297 482 8.73E-43 T 19-04-2016 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 PANTHER PTHR11552 2 540 1.6E-175 T 19-04-2016 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 91 114 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 Pfam PF00732 GMC oxidoreductase 12 302 6.8E-75 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_4109 8deb03451057ba94a345f551462e9cdc 541 PIRSF PIRSF000137 1 541 1.5E-129 T 19-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 AMED_1593 0883baf68b82bcd7add73191ae300c6f 254 SUPERFAMILY SSF52540 5 232 1.5E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1593 0883baf68b82bcd7add73191ae300c6f 254 Pfam PF00005 ABC transporter 22 177 4.5E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1593 0883baf68b82bcd7add73191ae300c6f 254 PANTHER PTHR24220 7 228 4.9E-78 T 19-04-2016 AMED_1593 0883baf68b82bcd7add73191ae300c6f 254 PANTHER PTHR24220:SF575 7 228 4.9E-78 T 19-04-2016 AMED_1593 0883baf68b82bcd7add73191ae300c6f 254 SMART SM00382 30 225 9.1E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1593 0883baf68b82bcd7add73191ae300c6f 254 Gene3D G3DSA:3.40.50.300 2 236 1.6E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3272 021a039e2f8284136429458c00f515c8 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_3272 021a039e2f8284136429458c00f515c8 490 Gene3D G3DSA:3.40.309.10 275 460 4.6E-65 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_3272 021a039e2f8284136429458c00f515c8 490 SUPERFAMILY SSF53720 17 487 3.53E-168 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_3272 021a039e2f8284136429458c00f515c8 490 Gene3D G3DSA:3.40.605.10 20 274 3.0E-98 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_3272 021a039e2f8284136429458c00f515c8 490 PANTHER PTHR11699 1 489 7.4E-225 T 19-04-2016 AMED_3272 021a039e2f8284136429458c00f515c8 490 Pfam PF00171 Aldehyde dehydrogenase family 27 485 8.0E-172 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 PANTHER PTHR10668:SF68 2 340 2.1E-134 T 19-04-2016 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 SUPERFAMILY SSF51905 1 290 1.33E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 PANTHER PTHR10668 2 340 2.1E-134 T 19-04-2016 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 Pfam PF00732 GMC oxidoreductase 3 265 3.7E-12 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 7.8E-5 T 19-04-2016 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 288 302 7.8E-5 T 19-04-2016 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 Gene3D G3DSA:3.50.50.60 2 123 2.8E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1553 ce091990ad80bbab9dee2712c25cbc84 399 Gene3D G3DSA:3.50.50.60 187 300 2.8E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0314 65ff20435af8c2ad6ecf063040148323 280 SUPERFAMILY SSF53335 12 260 1.06E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0314 65ff20435af8c2ad6ecf063040148323 280 Gene3D G3DSA:3.40.50.150 12 280 5.9E-90 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0314 65ff20435af8c2ad6ecf063040148323 280 Pfam PF04672 S-adenosyl methyltransferase 16 280 3.8E-75 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0314 65ff20435af8c2ad6ecf063040148323 280 PIRSF PIRSF017393 3 280 3.2E-75 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 PANTHER PTHR10245 7 84 4.7E-15 T 19-04-2016 AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 PIRSF PIRSF019251 1 473 5.4E-193 T 19-04-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 Pfam PF06114 Domain of unknown function (DUF955) 188 311 4.9E-18 T 19-04-2016 IPR010359 HTH domain, IrrE-type AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 Gene3D G3DSA:1.10.260.40 3 73 1.6E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 Pfam PF13560 Helix-turn-helix domain 7 61 6.6E-12 T 19-04-2016 AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 SMART SM00530 9 64 5.7E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 SUPERFAMILY SSF47413 4 67 4.79E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1637 8d150987e22cb7eb2d51614727be93c2 474 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 312 468 5.3E-71 T 19-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator AMED_6130 62c54f467c14a9b8a6f45557b86a5400 306 Gene3D G3DSA:3.40.630.30 140 292 2.9E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6130 62c54f467c14a9b8a6f45557b86a5400 306 Pfam PF00583 Acetyltransferase (GNAT) family 201 291 3.6E-8 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6130 62c54f467c14a9b8a6f45557b86a5400 306 SUPERFAMILY SSF55729 85 295 3.16E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 Pfam PF02817 e3 binding domain 146 181 7.4E-12 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 SUPERFAMILY SSF51230 4 97 5.1E-24 T 19-04-2016 IPR011053 Single hybrid motif AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 PANTHER PTHR23151:SF68 5 427 7.9E-137 T 19-04-2016 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 Gene3D G3DSA:2.40.50.100 4 97 6.0E-23 T 19-04-2016 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 29 58 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 Gene3D G3DSA:4.10.320.10 146 191 7.8E-14 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 199 427 8.7E-83 T 19-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 Gene3D G3DSA:3.30.559.10 192 426 6.2E-86 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 SUPERFAMILY SSF47005 142 185 7.06E-9 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 PANTHER PTHR23151 5 427 7.9E-137 T 19-04-2016 AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 Pfam PF00364 Biotin-requiring enzyme 6 78 1.8E-18 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_9218 c7c6d7c48c2433dcaf9b1a12c4549665 429 SUPERFAMILY SSF52777 190 426 1.02E-81 T 19-04-2016 AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.30.360.10 532 717 2.6E-23 T 19-04-2016 AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 405 525 1.3E-21 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Pfam PF00107 Zinc-binding dehydrogenase 182 296 1.1E-11 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.90.180.10 88 175 6.9E-16 T 19-04-2016 IPR011032 GroES-like AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.90.180.10 9 54 6.9E-16 T 19-04-2016 IPR011032 GroES-like AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.40.50.720 402 531 1.1E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF50129 87 180 1.53E-18 T 19-04-2016 IPR011032 GroES-like AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF50129 7 55 1.53E-18 T 19-04-2016 IPR011032 GroES-like AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF51735 149 299 7.19E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 PANTHER PTHR22604 391 725 8.6E-50 T 19-04-2016 AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF51735 394 570 8.74E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 Gene3D G3DSA:3.40.50.720 176 290 1.6E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0552 5ce3b8801ac4b3a872aef3b63847a42b 725 SUPERFAMILY SSF55347 558 683 5.23E-8 T 19-04-2016 AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 Pfam PF00106 short chain dehydrogenase 8 193 2.0E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 Gene3D G3DSA:3.40.50.720 2 239 2.5E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 SUPERFAMILY SSF51735 5 257 5.37E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PANTHER PTHR24322:SF242 12 187 4.7E-36 T 19-04-2016 AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.4E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.4E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.4E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.4E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 2.4E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.4E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PANTHER PTHR24322 12 187 4.7E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.8E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 3.8E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 3.8E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7683 8a57de70ef8a4929f6e60e9e305a359f 299 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 SUPERFAMILY SSF48179 185 256 4.0E-11 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 PANTHER PTHR23309:SF17 1 277 4.9E-88 T 19-04-2016 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 179 1.1E-43 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 PIRSF PIRSF000105 2 306 4.7E-62 T 19-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 Gene3D G3DSA:1.10.1040.10 187 238 1.7E-8 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 PANTHER PTHR23309 1 277 4.9E-88 T 19-04-2016 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 185 255 1.0E-13 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 182 207 - T 19-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 SUPERFAMILY SSF51735 2 182 7.98E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6369 3f0449679caca81ec59aa0bdff453a0f 308 Gene3D G3DSA:3.40.50.720 2 186 3.1E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 SUPERFAMILY SSF56519 131 288 3.66E-7 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 Gene3D G3DSA:3.90.1310.10 252 297 3.1E-4 T 19-04-2016 AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 SUPERFAMILY SSF54427 19 121 4.7E-5 T 19-04-2016 IPR032710 NTF2-like domain AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 Pfam PF00905 Penicillin binding protein transpeptidase domain 312 577 1.6E-39 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 SUPERFAMILY SSF56601 250 571 3.59E-58 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 16 124 3.6E-17 T 19-04-2016 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 PANTHER PTHR30627 245 585 5.4E-90 T 19-04-2016 AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 Gene3D G3DSA:3.40.710.10 298 582 8.7E-60 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2045 d7e42059bd1826c3ceb738496dbb5f2e 586 PANTHER PTHR30627:SF4 245 585 5.4E-90 T 19-04-2016 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 PANTHER PTHR11956 2 553 3.7E-196 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 SUPERFAMILY SSF47323 424 553 1.31E-31 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 29 553 3.3E-117 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Gene3D G3DSA:3.30.1360.70 5 112 2.5E-28 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 SUPERFAMILY SSF55190 8 113 8.63E-22 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 SMART SM01016 4 93 6.8E-33 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Hamap MF_00123 Arginine--tRNA ligase [argS]. 8 553 24.745 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 PANTHER PTHR11956:SF6 2 553 3.7E-196 T 19-04-2016 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 137 153 1.6E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 298 319 1.6E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 161 174 1.6E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 PRINTS PR01038 Arginyl-tRNA synthetase signature 122 137 1.6E-22 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Pfam PF00750 tRNA synthetases class I (R) 121 390 3.3E-14 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 132 141 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 24 93 6.7E-23 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 SMART SM00836 429 553 9.2E-49 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Pfam PF05746 DALR anticodon binding domain 429 553 5.5E-32 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Gene3D G3DSA:1.10.730.10 433 553 2.2E-40 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 SUPERFAMILY SSF52374 119 440 7.78E-80 T 19-04-2016 AMED_7797 a0398d405a8452ecf814b0b21b19828b 553 Gene3D G3DSA:3.40.50.620 119 432 1.6E-88 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 163 479 2.7E-135 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 PANTHER PTHR39447:SF2 163 479 5.5E-107 T 19-04-2016 AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 Gene3D G3DSA:2.60.120.200 162 480 6.0E-138 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 SMART SM00458 23 152 7.8E-25 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 SUPERFAMILY SSF49899 163 479 2.37E-99 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 PANTHER PTHR39447 163 479 5.5E-107 T 19-04-2016 AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 Gene3D G3DSA:2.80.10.50 28 150 1.0E-37 T 19-04-2016 AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 SUPERFAMILY SSF50370 28 149 3.28E-37 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3297 bc36df077cc542b87fd0168273a7dc2c 480 Pfam PF00652 Ricin-type beta-trefoil lectin domain 28 149 1.7E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7477 75f1e4555964df58ef04b951192f3233 499 PANTHER PTHR33938:SF4 54 499 2.0E-146 T 19-04-2016 AMED_7477 75f1e4555964df58ef04b951192f3233 499 Gene3D G3DSA:3.40.50.1820 376 456 1.1E-6 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7477 75f1e4555964df58ef04b951192f3233 499 Gene3D G3DSA:3.40.50.1820 166 202 1.1E-6 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7477 75f1e4555964df58ef04b951192f3233 499 Pfam PF07519 Tannase and feruloyl esterase 55 498 8.1E-95 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_7477 75f1e4555964df58ef04b951192f3233 499 SUPERFAMILY SSF53474 357 458 1.4E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7477 75f1e4555964df58ef04b951192f3233 499 SUPERFAMILY SSF53474 61 215 1.4E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7477 75f1e4555964df58ef04b951192f3233 499 PANTHER PTHR33938 54 499 2.0E-146 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 PANTHER PTHR23501 3 481 1.9E-208 T 19-04-2016 AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 Gene3D G3DSA:1.20.1250.20 15 197 3.7E-27 T 19-04-2016 AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 Pfam PF07690 Major Facilitator Superfamily 22 416 2.8E-43 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 SUPERFAMILY SSF103473 12 203 1.83E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 SUPERFAMILY SSF103473 251 465 1.83E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 Gene3D G3DSA:1.20.1250.20 267 468 1.0E-16 T 19-04-2016 AMED_3472 3f2941f4c8b3e39ded179414c8d1c5ab 481 PANTHER PTHR23501:SF15 3 481 1.9E-208 T 19-04-2016 AMED_2659 4b1c44f9f539cc3bc02e5078ac1734b0 208 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 3 139 9.3E-20 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_2659 4b1c44f9f539cc3bc02e5078ac1734b0 208 SUPERFAMILY SSF109854 3 141 3.05E-9 T 19-04-2016 AMED_2659 4b1c44f9f539cc3bc02e5078ac1734b0 208 Gene3D G3DSA:1.20.120.450 1 36 7.8E-5 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_2519 97815ca22b689f7b1f241169eb105111 378 SUPERFAMILY SSF55961 125 342 1.04E-28 T 19-04-2016 AMED_2519 97815ca22b689f7b1f241169eb105111 378 SUPERFAMILY SSF50022 9 129 3.14E-29 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2519 97815ca22b689f7b1f241169eb105111 378 PANTHER PTHR21266 7 371 5.9E-100 T 19-04-2016 AMED_2519 97815ca22b689f7b1f241169eb105111 378 PANTHER PTHR21266:SF31 7 371 5.9E-100 T 19-04-2016 AMED_2519 97815ca22b689f7b1f241169eb105111 378 Pfam PF00355 Rieske [2Fe-2S] domain 22 104 1.9E-17 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2519 97815ca22b689f7b1f241169eb105111 378 Gene3D G3DSA:2.102.10.10 20 136 8.6E-30 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 SUPERFAMILY SSF88946 12 117 8.24E-22 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 Gene3D G3DSA:1.10.10.10 124 184 2.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 54 86 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 PANTHER PTHR30173 2 185 3.1E-47 T 19-04-2016 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 Pfam PF04542 Sigma-70 region 2 31 99 1.8E-17 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 Pfam PF04545 Sigma-70, region 4 131 180 4.3E-14 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 182 1.2E-27 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 Gene3D G3DSA:1.10.1740.10 21 122 1.9E-21 T 19-04-2016 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 PANTHER PTHR30173:SF17 2 185 3.1E-47 T 19-04-2016 AMED_2541 0cf2e1d1ef61724c57dd0f693be24422 186 SUPERFAMILY SSF88659 121 183 5.05E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 Gene3D G3DSA:3.90.180.10 2 179 6.2E-51 T 19-04-2016 IPR011032 GroES-like AMED_3048 95626d360a036357f33d8d8e19f923ac 382 SUPERFAMILY SSF50129 2 188 2.43E-58 T 19-04-2016 IPR011032 GroES-like AMED_3048 95626d360a036357f33d8d8e19f923ac 382 PANTHER PTHR11695 12 256 1.8E-138 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 139 3.8E-28 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 PANTHER PTHR11695 278 381 1.8E-138 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 PANTHER PTHR11695:SF281 278 381 1.8E-138 T 19-04-2016 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 PANTHER PTHR11695:SF281 12 256 1.8E-138 T 19-04-2016 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 Gene3D G3DSA:3.40.50.720 180 321 5.1E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3048 95626d360a036357f33d8d8e19f923ac 382 SUPERFAMILY SSF51735 154 341 5.73E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3048 95626d360a036357f33d8d8e19f923ac 382 Pfam PF00107 Zinc-binding dehydrogenase 188 259 3.2E-11 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3048 95626d360a036357f33d8d8e19f923ac 382 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_1072 9356ddb55a0d4d9236b0723b677ff12a 166 PANTHER PTHR41386:SF1 8 152 1.4E-52 T 19-04-2016 AMED_1072 9356ddb55a0d4d9236b0723b677ff12a 166 PANTHER PTHR41386 8 152 1.4E-52 T 19-04-2016 AMED_1072 9356ddb55a0d4d9236b0723b677ff12a 166 Pfam PF06210 Protein of unknown function (DUF1003) 40 140 1.3E-39 T 19-04-2016 IPR010406 Protein of unknown function DUF1003 AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 Pfam PF08241 Methyltransferase domain 76 172 6.4E-23 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 PANTHER PTHR10108 263 314 4.3E-48 T 19-04-2016 AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 Gene3D G3DSA:3.40.50.150 33 189 8.6E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 Gene3D G3DSA:3.40.50.150 224 266 8.6E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 PANTHER PTHR10108 40 182 4.3E-48 T 19-04-2016 AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 PANTHER PTHR10108:SF921 40 182 4.3E-48 T 19-04-2016 AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 SUPERFAMILY SSF53335 37 197 1.66E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 SUPERFAMILY SSF53335 230 256 1.66E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1615 f5f2c53f7b91e4ac1a80e5c0aeb8445c 321 PANTHER PTHR10108:SF921 263 314 4.3E-48 T 19-04-2016 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 SUPERFAMILY SSF88659 110 191 1.87E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 Gene3D G3DSA:1.10.1740.10 31 101 1.2E-26 T 19-04-2016 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 Pfam PF08281 Sigma-70, region 4 134 184 8.0E-17 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 PANTHER PTHR30173 31 194 1.2E-64 T 19-04-2016 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 PANTHER PTHR30173:SF18 31 194 1.2E-64 T 19-04-2016 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 Pfam PF04542 Sigma-70 region 2 36 101 3.1E-21 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 SUPERFAMILY SSF88946 31 114 1.12E-24 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1067 197e50d18536e3c67a350ce000de81f4 203 Gene3D G3DSA:1.10.10.10 129 190 1.4E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1067 197e50d18536e3c67a350ce000de81f4 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 186 2.4E-30 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 PANTHER PTHR30173 2 280 5.0E-97 T 19-04-2016 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 Pfam PF08281 Sigma-70, region 4 104 154 1.3E-6 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 Gene3D G3DSA:1.10.10.10 103 156 1.8E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 SUPERFAMILY SSF88946 5 87 2.35E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 SUPERFAMILY SSF88659 98 156 3.36E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 Gene3D G3DSA:3.10.450.50 167 276 2.5E-10 T 19-04-2016 IPR032710 NTF2-like domain AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 156 2.4E-16 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 PANTHER PTHR30173:SF11 2 280 5.0E-97 T 19-04-2016 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 Gene3D G3DSA:1.10.1740.10 6 97 1.4E-16 T 19-04-2016 AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 SUPERFAMILY SSF54427 168 279 1.19E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_1938 5df4d8b48a6e2e9fd096fee2443fb483 284 Pfam PF04542 Sigma-70 region 2 8 72 2.5E-14 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 PANTHER PTHR22847 4 524 2.0E-38 T 19-04-2016 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 500 514 - T 19-04-2016 IPR019775 WD40 repeat, conserved site AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 386 533 1.1E-26 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SUPERFAMILY SSF50998 255 520 4.45E-50 T 19-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SUPERFAMILY SSF50998 2 116 4.45E-50 T 19-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SUPERFAMILY SSF50998 148 172 4.45E-50 T 19-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 402 428 0.0014 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 151 172 0.022 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 66 90 0.026 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 482 513 3.8E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Pfam PF00400 WD domain, G-beta repeat 352 387 0.021 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 2 164 7.0E-29 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 474 513 1.8E-5 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 178 215 490.0 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 138 173 1.3 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 9 48 0.54 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 348 387 0.022 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 51 90 0.0044 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 394 429 0.45 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 432 471 0.02 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 SMART SM00320 223 258 46.0 T 19-04-2016 IPR001680 WD40 repeat GO:0005515 AMED_5824 d1535c7f41e0ba1fad0ca4543a867167 558 Gene3D G3DSA:2.130.10.10 165 385 1.1E-30 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 Pfam PF00196 Bacterial regulatory proteins, luxR family 794 847 1.2E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 Gene3D G3DSA:1.25.40.10 503 633 1.6E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 Gene3D G3DSA:1.25.40.10 355 406 1.6E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 Pfam PF13191 AAA ATPase domain 8 137 1.7E-10 T 19-04-2016 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 794 808 1.2E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 808 824 1.2E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 824 836 1.2E-6 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 Gene3D G3DSA:3.40.50.300 13 123 5.4E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 SUPERFAMILY SSF52540 8 211 1.84E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 Gene3D G3DSA:1.10.10.10 793 847 1.1E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 SUPERFAMILY SSF46894 785 847 6.12E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5173 5f8710ebd2db6022b61aca6493b1962b 861 SMART SM00421 791 848 1.8E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5411 492959fa0e1d2de6b38ddca40a28a2cb 400 SUPERFAMILY SSF53756 2 392 3.77E-70 T 19-04-2016 AMED_5411 492959fa0e1d2de6b38ddca40a28a2cb 400 Pfam PF06722 Protein of unknown function (DUF1205) 186 279 5.7E-20 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5411 492959fa0e1d2de6b38ddca40a28a2cb 400 Gene3D G3DSA:3.40.50.2000 230 373 1.5E-25 T 19-04-2016 AMED_5411 492959fa0e1d2de6b38ddca40a28a2cb 400 Gene3D G3DSA:3.40.50.2000 2 229 6.2E-30 T 19-04-2016 AMED_5411 492959fa0e1d2de6b38ddca40a28a2cb 400 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 286 370 2.5E-7 T 19-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 PANTHER PTHR30173 14 172 1.3E-29 T 19-04-2016 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 SUPERFAMILY SSF88946 14 94 1.77E-12 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 Gene3D G3DSA:1.10.1740.10 14 98 5.9E-13 T 19-04-2016 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 Gene3D G3DSA:1.10.10.10 106 166 1.4E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 164 1.1E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 Pfam PF08281 Sigma-70, region 4 108 160 8.5E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 Pfam PF04542 Sigma-70 region 2 17 78 6.8E-6 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9283 0b07f8cc3744edaa5f97082a5446ab54 172 SUPERFAMILY SSF88659 101 165 6.76E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7058 d3b8880498fc6fafc8e47c7a49008600 239 PANTHER PTHR36925 1 239 2.3E-66 T 19-04-2016 AMED_7058 d3b8880498fc6fafc8e47c7a49008600 239 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 237 1.3E-42 T 19-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AMED_7058 d3b8880498fc6fafc8e47c7a49008600 239 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 236 9.6E-70 T 19-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 SMART SM00331 168 391 7.9E-14 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 SUPERFAMILY SSF52172 10 149 1.42E-19 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 Pfam PF00072 Response regulator receiver domain 17 123 3.6E-13 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 SMART SM00448 15 127 8.1E-8 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 PANTHER PTHR26402 15 379 1.1E-42 T 19-04-2016 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 PANTHER PTHR26402:SF517 15 379 1.1E-42 T 19-04-2016 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 Gene3D G3DSA:3.40.50.2300 14 136 1.2E-20 T 19-04-2016 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 SUPERFAMILY SSF81606 186 385 3.4E-5 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_7595 04b47f50090b47576f99e68dd0ddac2d 400 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 198 390 1.6E-39 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 219 6.5E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 PANTHER PTHR26402 3 222 2.8E-75 T 19-04-2016 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 SMART SM00862 147 219 7.5E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 Gene3D G3DSA:1.10.10.10 125 220 6.5E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 PANTHER PTHR26402:SF578 3 222 2.8E-75 T 19-04-2016 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 Pfam PF00072 Response regulator receiver domain 5 111 3.2E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 SUPERFAMILY SSF52172 4 185 1.85E-36 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 SMART SM00448 3 111 2.6E-35 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4943 fdc9b188bf7f45c4b8ff07f6d6304944 222 Gene3D G3DSA:3.40.50.2300 2 119 1.8E-35 T 19-04-2016 AMED_6732 1bf4a5abee0a5450ea44c3ed38b77e34 449 PANTHER PTHR11360:SF135 15 443 1.4E-143 T 19-04-2016 AMED_6732 1bf4a5abee0a5450ea44c3ed38b77e34 449 Gene3D G3DSA:1.20.1250.20 236 438 7.5E-18 T 19-04-2016 AMED_6732 1bf4a5abee0a5450ea44c3ed38b77e34 449 Gene3D G3DSA:1.20.1250.20 17 211 3.1E-14 T 19-04-2016 AMED_6732 1bf4a5abee0a5450ea44c3ed38b77e34 449 Pfam PF07690 Major Facilitator Superfamily 33 388 3.9E-31 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6732 1bf4a5abee0a5450ea44c3ed38b77e34 449 SUPERFAMILY SSF103473 14 436 6.54E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6732 1bf4a5abee0a5450ea44c3ed38b77e34 449 PANTHER PTHR11360 15 443 1.4E-143 T 19-04-2016 AMED_0955 d3efde2f8b344188d807d8399f7ad1bb 112 Gene3D G3DSA:1.10.10.10 3 100 2.9E-40 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0955 d3efde2f8b344188d807d8399f7ad1bb 112 PANTHER PTHR33204 3 94 1.3E-36 T 19-04-2016 AMED_0955 d3efde2f8b344188d807d8399f7ad1bb 112 Pfam PF01638 HxlR-like helix-turn-helix 7 93 1.3E-31 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_0955 d3efde2f8b344188d807d8399f7ad1bb 112 SUPERFAMILY SSF46785 3 98 2.42E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6506 2933ec550450717c53ea184de919431b 223 PANTHER PTHR26402 2 221 1.8E-94 T 19-04-2016 AMED_6506 2933ec550450717c53ea184de919431b 223 Pfam PF00072 Response regulator receiver domain 4 116 4.9E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6506 2933ec550450717c53ea184de919431b 223 SUPERFAMILY SSF52172 3 134 4.41E-36 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6506 2933ec550450717c53ea184de919431b 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 214 4.1E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 SMART SM00421 157 214 9.6E-26 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 PANTHER PTHR26402:SF564 2 221 1.8E-94 T 19-04-2016 AMED_6506 2933ec550450717c53ea184de919431b 223 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 Gene3D G3DSA:3.40.50.2300 2 122 8.2E-39 T 19-04-2016 AMED_6506 2933ec550450717c53ea184de919431b 223 SUPERFAMILY SSF46894 154 220 1.94E-22 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 1.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 1.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 1.3E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6506 2933ec550450717c53ea184de919431b 223 Gene3D G3DSA:1.10.10.10 123 221 2.1E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6506 2933ec550450717c53ea184de919431b 223 SMART SM00448 2 115 9.9E-34 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 3.0E-8 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 8 22 3.0E-8 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 3.0E-8 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Gene3D G3DSA:3.30.300.10 393 518 4.9E-48 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PANTHER PTHR11922 8 515 2.0E-257 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 2.6E-9 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 2.6E-9 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 2.6E-9 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Pfam PF00117 Glutamine amidotransferase class-I 10 190 3.3E-41 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 8 195 3.4E-69 T 19-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 SUPERFAMILY SSF52402 184 438 4.41E-54 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 204 518 5.2E-145 T 19-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Pfam PF02540 NAD synthase 216 250 2.2E-5 T 19-04-2016 IPR022310 NAD/GMP synthase AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Pfam PF00958 GMP synthase C terminal domain 425 517 1.1E-38 T 19-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PANTHER PTHR11922:SF2 8 515 2.0E-257 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 SUPERFAMILY SSF52317 6 228 6.27E-54 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Gene3D G3DSA:3.40.50.620 214 391 2.1E-55 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00097 Anthranilate synthase component II signature 168 181 1.8E-6 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00097 Anthranilate synthase component II signature 52 61 1.8E-6 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 PRINTS PR00097 Anthranilate synthase component II signature 79 90 1.8E-6 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 SUPERFAMILY SSF54810 397 518 1.05E-45 T 19-04-2016 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 5 518 52.791 T 19-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMED_0782 d90169fc1d80f26c552e5c8c94a2a45a 518 Gene3D G3DSA:3.40.50.880 8 213 2.2E-59 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_1530 370276cb51afadf60e2777d603c12d26 493 PANTHER PTHR31339 29 347 2.3E-36 T 19-04-2016 AMED_1530 370276cb51afadf60e2777d603c12d26 493 PANTHER PTHR31339:SF0 29 347 2.3E-36 T 19-04-2016 AMED_1530 370276cb51afadf60e2777d603c12d26 493 Gene3D G3DSA:2.160.20.10 13 492 6.9E-77 T 19-04-2016 IPR012334 Pectin lyase fold AMED_1530 370276cb51afadf60e2777d603c12d26 493 SUPERFAMILY SSF51126 22 379 5.46E-55 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_1530 370276cb51afadf60e2777d603c12d26 493 Pfam PF00295 Glycosyl hydrolases family 28 78 385 1.3E-22 T 19-04-2016 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 AMED_4675 26f9542f98f6471956e759761dbb6777 207 SUPERFAMILY SSF46689 8 78 1.8E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4675 26f9542f98f6471956e759761dbb6777 207 PANTHER PTHR30055 4 205 1.6E-28 T 19-04-2016 AMED_4675 26f9542f98f6471956e759761dbb6777 207 Gene3D G3DSA:1.10.357.10 71 204 2.9E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4675 26f9542f98f6471956e759761dbb6777 207 Gene3D G3DSA:1.10.260.40 49 70 6.1E-4 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4675 26f9542f98f6471956e759761dbb6777 207 PANTHER PTHR30055:SF10 4 205 1.6E-28 T 19-04-2016 AMED_4675 26f9542f98f6471956e759761dbb6777 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 60 7.0E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4675 26f9542f98f6471956e759761dbb6777 207 Gene3D G3DSA:1.10.10.60 6 48 2.0E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 PANTHER PTHR30055 10 209 5.4E-23 T 19-04-2016 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 SUPERFAMILY SSF48498 102 194 1.14E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3886 53831994c8e0d0de65d998facaa5284b 217 Gene3D G3DSA:1.10.357.10 18 205 3.4E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 SUPERFAMILY SSF46689 15 88 6.16E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 Pfam PF13977 Bacterial transcriptional repressor 102 200 9.5E-9 T 19-04-2016 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 3.3E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 4.3E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3886 53831994c8e0d0de65d998facaa5284b 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 4.3E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7242 d73e9eb18b600671772ad2d230f76ff9 241 Gene3D G3DSA:3.40.30.10 1 209 3.6E-32 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7242 d73e9eb18b600671772ad2d230f76ff9 241 Pfam PF01323 DSBA-like thioredoxin domain 2 203 3.7E-31 T 19-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 AMED_7242 d73e9eb18b600671772ad2d230f76ff9 241 SUPERFAMILY SSF52833 1 210 4.62E-28 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7242 d73e9eb18b600671772ad2d230f76ff9 241 PANTHER PTHR13887:SF10 1 209 1.6E-29 T 19-04-2016 AMED_7242 d73e9eb18b600671772ad2d230f76ff9 241 PANTHER PTHR13887 1 209 1.6E-29 T 19-04-2016 AMED_7173 9092694b465b014a4dc3ac87bb2de800 100 Pfam PF00805 Pentapeptide repeats (8 copies) 24 49 2.0E-7 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_7173 9092694b465b014a4dc3ac87bb2de800 100 SUPERFAMILY SSF141571 1 74 1.57E-14 T 19-04-2016 AMED_0631 826ff670645b5761ee7d2b0f09d3cb81 255 SUPERFAMILY SSF102588 3 239 5.1E-50 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_0631 826ff670645b5761ee7d2b0f09d3cb81 255 Gene3D G3DSA:3.40.50.10320 3 253 5.5E-57 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_0631 826ff670645b5761ee7d2b0f09d3cb81 255 PANTHER PTHR12993:SF13 3 254 5.8E-31 T 19-04-2016 AMED_0631 826ff670645b5761ee7d2b0f09d3cb81 255 PANTHER PTHR12993 3 254 5.8E-31 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_0631 826ff670645b5761ee7d2b0f09d3cb81 255 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 144 1.3E-23 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 PANTHER PTHR22888 2 283 1.8E-70 T 19-04-2016 AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 Gene3D G3DSA:1.10.287.90 24 112 5.6E-15 T 19-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 PANTHER PTHR22888:SF2 2 283 1.8E-70 T 19-04-2016 AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 183 236 - T 19-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 SUPERFAMILY SSF81464 10 111 3.6E-16 T 19-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 Gene3D G3DSA:2.60.40.420 117 275 5.1E-38 T 19-04-2016 IPR008972 Cupredoxin AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 SUPERFAMILY SSF49503 117 277 2.51E-36 T 19-04-2016 IPR008972 Cupredoxin AMED_2193 67547782206a8fe094725aacd8ae1a6c 302 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 126 242 2.1E-16 T 19-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 AMED_4007 22101cb88c2507df279276072be9eefe 85 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 42 82 8.0E-5 T 19-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 AMED_4007 22101cb88c2507df279276072be9eefe 85 Pfam PF00550 Phosphopantetheine attachment site 10 81 5.6E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4007 22101cb88c2507df279276072be9eefe 85 Gene3D G3DSA:1.10.1200.10 5 83 6.6E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4007 22101cb88c2507df279276072be9eefe 85 SUPERFAMILY SSF47336 3 84 4.45E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3847 e85f43b69e38e65c3f6c6a132412536e 200 PANTHER PTHR30055 7 194 2.2E-22 T 19-04-2016 AMED_3847 e85f43b69e38e65c3f6c6a132412536e 200 SUPERFAMILY SSF48498 76 194 8.9E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3847 e85f43b69e38e65c3f6c6a132412536e 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 7.8E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3847 e85f43b69e38e65c3f6c6a132412536e 200 Gene3D G3DSA:1.10.357.10 7 191 2.4E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3847 e85f43b69e38e65c3f6c6a132412536e 200 SUPERFAMILY SSF46689 6 77 7.28E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 Gene3D G3DSA:3.40.50.300 3 230 3.4E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 SMART SM00382 30 213 6.0E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 SUPERFAMILY SSF52540 4 228 1.36E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 PANTHER PTHR24220:SF591 7 227 3.8E-84 T 19-04-2016 AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 PANTHER PTHR24220 7 227 3.8E-84 T 19-04-2016 AMED_7621 172dc28f1e9ade93e9522b6edc43f9f1 309 Pfam PF00005 ABC transporter 22 164 1.1E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 256 298 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 Gene3D G3DSA:1.10.10.60 200 256 1.0E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 PANTHER PTHR11019 1 111 6.8E-52 T 19-04-2016 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 PANTHER PTHR11019 138 310 6.8E-52 T 19-04-2016 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 SMART SM00342 219 302 1.1E-27 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 SUPERFAMILY SSF46689 204 252 3.88E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 PANTHER PTHR11019:SF77 1 111 6.8E-52 T 19-04-2016 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 PANTHER PTHR11019:SF77 138 310 6.8E-52 T 19-04-2016 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 Pfam PF12833 Helix-turn-helix domain 225 303 2.1E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 Pfam PF12852 Cupin 2 188 1.6E-43 T 19-04-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 Gene3D G3DSA:1.10.10.60 257 304 2.9E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7355 f9895a2d5677d0073cc44fe81f5cb45e 310 SUPERFAMILY SSF46689 255 304 7.17E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1309 353e403bf2248a3c17e595015c7f018e 525 SUPERFAMILY SSF52540 283 503 2.66E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1309 353e403bf2248a3c17e595015c7f018e 525 PANTHER PTHR24220:SF308 18 397 4.3E-149 T 19-04-2016 AMED_1309 353e403bf2248a3c17e595015c7f018e 525 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1309 353e403bf2248a3c17e595015c7f018e 525 Pfam PF00005 ABC transporter 32 182 4.0E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1309 353e403bf2248a3c17e595015c7f018e 525 Pfam PF00005 ABC transporter 288 442 8.9E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1309 353e403bf2248a3c17e595015c7f018e 525 Gene3D G3DSA:3.40.50.300 284 506 2.5E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1309 353e403bf2248a3c17e595015c7f018e 525 Gene3D G3DSA:3.40.50.300 13 238 4.3E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1309 353e403bf2248a3c17e595015c7f018e 525 SUPERFAMILY SSF52540 15 239 5.85E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1309 353e403bf2248a3c17e595015c7f018e 525 PANTHER PTHR24220 18 397 4.3E-149 T 19-04-2016 AMED_1309 353e403bf2248a3c17e595015c7f018e 525 SMART SM00382 41 229 3.5E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1309 353e403bf2248a3c17e595015c7f018e 525 SMART SM00382 297 491 1.0E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 PANTHER PTHR22604 18 345 1.1E-92 T 19-04-2016 AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 SUPERFAMILY SSF51735 11 168 3.43E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 Gene3D G3DSA:3.40.50.720 19 160 1.5E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 PANTHER PTHR22604:SF105 18 345 1.1E-92 T 19-04-2016 AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 21 138 7.8E-26 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 SUPERFAMILY SSF55347 145 288 2.13E-34 T 19-04-2016 AMED_7254 787ed5bef050a8ae32d3c7a23b3386e6 351 Gene3D G3DSA:3.30.360.10 161 341 8.8E-41 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 SUPERFAMILY SSF56801 4 514 5.36E-104 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 Pfam PF13193 AMP-binding enzyme C-terminal domain 429 505 2.3E-13 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 Gene3D G3DSA:2.30.38.10 344 413 2.2E-10 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 PANTHER PTHR24095 219 505 1.7E-83 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 PANTHER PTHR24095 2 203 1.7E-83 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 ProSitePatterns PS00455 Putative AMP-binding domain signature. 166 177 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 Gene3D G3DSA:3.40.50.980 173 326 9.9E-20 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 Gene3D G3DSA:3.40.50.980 5 172 1.4E-36 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 Gene3D G3DSA:3.30.300.30 418 510 1.7E-23 T 19-04-2016 AMED_3881 5c29fba7fd329a1638e2751b85b7a448 522 Pfam PF00501 AMP-binding enzyme 9 413 6.1E-60 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_2411 1b545698989c3847a718d2ee48e2ee75 364 PANTHER PTHR24421:SF26 31 364 2.3E-50 T 19-04-2016 AMED_2411 1b545698989c3847a718d2ee48e2ee75 364 PANTHER PTHR24421 31 364 2.3E-50 T 19-04-2016 AMED_2411 1b545698989c3847a718d2ee48e2ee75 364 Pfam PF07730 Histidine kinase 171 238 3.0E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2411 1b545698989c3847a718d2ee48e2ee75 364 SUPERFAMILY SSF55874 242 363 5.09E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 SUPERFAMILY SSF53474 4 282 4.54E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 Pfam PF00561 alpha/beta hydrolase fold 22 146 1.1E-16 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PANTHER PTHR10992 8 67 5.6E-50 T 19-04-2016 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PANTHER PTHR10992 228 288 5.6E-50 T 19-04-2016 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PANTHER PTHR10992 86 166 5.6E-50 T 19-04-2016 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 232 246 2.9E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 2.9E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 2.9E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PANTHER PTHR10992:SF851 8 67 5.6E-50 T 19-04-2016 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PANTHER PTHR10992:SF851 228 288 5.6E-50 T 19-04-2016 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 PANTHER PTHR10992:SF851 86 166 5.6E-50 T 19-04-2016 AMED_6949 fa70ef27e4589b884a7c7c448f45f4b9 288 Gene3D G3DSA:3.40.50.1820 3 282 1.2E-67 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0714 ab25fce0679a5d0c0611d75b48876664 525 TIGRFAM TIGR03919 T7SS_EccB: type VII secretion protein EccB 119 497 1.6E-56 T 19-04-2016 IPR007795 Type VII secretion system EccB AMED_0714 ab25fce0679a5d0c0611d75b48876664 525 PANTHER PTHR40765 116 525 5.4E-38 T 19-04-2016 AMED_0714 ab25fce0679a5d0c0611d75b48876664 525 PANTHER PTHR40765 1 88 5.4E-38 T 19-04-2016 AMED_0714 ab25fce0679a5d0c0611d75b48876664 525 Pfam PF05108 Type VII secretion system ESX-1, transport TM domain B 1 510 6.3E-106 T 19-04-2016 IPR007795 Type VII secretion system EccB AMED_0714 ab25fce0679a5d0c0611d75b48876664 525 PANTHER PTHR40765:SF1 116 525 5.4E-38 T 19-04-2016 AMED_0714 ab25fce0679a5d0c0611d75b48876664 525 PANTHER PTHR40765:SF1 1 88 5.4E-38 T 19-04-2016 AMED_0323 22a7b7cbf6c59c6a6881b852c8396f5b 180 Pfam PF04978 Protein of unknown function (DUF664) 31 176 8.5E-42 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_0323 22a7b7cbf6c59c6a6881b852c8396f5b 180 Gene3D G3DSA:1.20.120.450 13 180 2.1E-45 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_0323 22a7b7cbf6c59c6a6881b852c8396f5b 180 SUPERFAMILY SSF109854 10 175 3.05E-42 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 PRINTS PR00419 Adrenodoxin reductase family signature 173 187 6.8E-6 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 PRINTS PR00419 Adrenodoxin reductase family signature 224 237 6.8E-6 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 6.8E-6 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 PANTHER PTHR23023:SF132 3 483 1.8E-219 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 SUPERFAMILY SSF51905 293 410 2.41E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 SUPERFAMILY SSF51905 5 226 2.41E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 PANTHER PTHR23023 3 483 1.8E-219 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 209 6.3E-14 T 19-04-2016 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 Gene3D G3DSA:3.50.50.60 323 484 9.9E-20 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9114 8b32748fd31942e6bcaf920dfa16342d 490 Gene3D G3DSA:3.50.50.60 3 246 1.2E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6475 fc83562861d26467bacefc374acb207f 229 PANTHER PTHR10992:SF832 6 228 6.7E-30 T 19-04-2016 AMED_6475 fc83562861d26467bacefc374acb207f 229 SUPERFAMILY SSF53474 7 224 2.13E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6475 fc83562861d26467bacefc374acb207f 229 PANTHER PTHR10992 6 228 6.7E-30 T 19-04-2016 AMED_6475 fc83562861d26467bacefc374acb207f 229 Pfam PF12697 Alpha/beta hydrolase family 8 220 5.2E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6475 fc83562861d26467bacefc374acb207f 229 Gene3D G3DSA:3.40.50.1820 7 226 1.6E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4245 8d79c44bbae521854e6f8a10f453ff8c 153 PANTHER PTHR33877 1 150 4.8E-39 T 19-04-2016 AMED_4245 8d79c44bbae521854e6f8a10f453ff8c 153 SMART SM00507 68 118 1.8E-8 T 19-04-2016 IPR003615 HNH nuclease AMED_4245 8d79c44bbae521854e6f8a10f453ff8c 153 Pfam PF14279 HNH endonuclease 81 136 2.2E-8 T 19-04-2016 IPR029471 HNH endonuclease 5 AMED_3679 a2d824061ca6285cfac98cd5257dff7d 338 PANTHER PTHR37834 9 337 7.2E-21 T 19-04-2016 AMED_3679 a2d824061ca6285cfac98cd5257dff7d 338 SUPERFAMILY SSF52266 154 337 1.13E-23 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3679 a2d824061ca6285cfac98cd5257dff7d 338 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 156 328 9.4E-19 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3679 a2d824061ca6285cfac98cd5257dff7d 338 PANTHER PTHR37834:SF2 9 337 7.2E-21 T 19-04-2016 AMED_3679 a2d824061ca6285cfac98cd5257dff7d 338 Gene3D G3DSA:3.40.50.1110 146 336 2.2E-20 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 PANTHER PTHR32282:SF10 15 791 0.0 T 19-04-2016 AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.20.1580.10 107 183 3.9E-30 T 19-04-2016 AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.20.1580.10 297 362 3.9E-30 T 19-04-2016 AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 SUPERFAMILY SSF52540 498 622 6.8E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 SUPERFAMILY SSF52540 309 454 3.4E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 SUPERFAMILY SSF52540 19 67 3.4E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 PANTHER PTHR32282 15 791 0.0 T 19-04-2016 AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Pfam PF00005 ABC transporter 503 711 2.8E-12 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:3.40.50.300 490 547 5.9E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:3.40.50.300 6 79 3.2E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:3.40.50.300 363 476 3.2E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:3.40.50.300 674 780 5.9E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 SUPERFAMILY SSF52540 659 777 6.8E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.10.8.280 185 296 2.6E-8 T 19-04-2016 AMED_2530 82df84350db03f91440c6a43bc8e5b71 793 Gene3D G3DSA:1.20.1580.10 551 673 4.8E-36 T 19-04-2016 AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 Pfam PF13202 EF hand 154 174 1.7E-4 T 19-04-2016 IPR002048 EF-hand domain GO:0005509 AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 39 51 - T 19-04-2016 IPR018247 EF-Hand 1, calcium-binding site AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 Pfam PF13499 EF-hand domain pair 30 141 2.2E-7 T 19-04-2016 IPR002048 EF-hand domain GO:0005509 AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 Gene3D G3DSA:1.10.238.10 26 191 2.0E-22 T 19-04-2016 IPR011992 EF-hand domain pair AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 SUPERFAMILY SSF47473 23 185 1.11E-21 T 19-04-2016 IPR011992 EF-hand domain pair AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 SMART SM00054 30 58 9.7 T 19-04-2016 IPR002048 EF-hand domain GO:0005509 AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 SMART SM00054 117 145 0.42 T 19-04-2016 IPR002048 EF-hand domain GO:0005509 AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 SMART SM00054 154 179 27.0 T 19-04-2016 IPR002048 EF-hand domain GO:0005509 AMED_6137 62810fd20ea137b606c9d06dd64ce359 196 ProSitePatterns PS00018 EF-hand calcium-binding domain. 126 138 - T 19-04-2016 IPR018247 EF-Hand 1, calcium-binding site AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 SUPERFAMILY SSF51735 6 239 1.1E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 Pfam PF00106 short chain dehydrogenase 6 202 5.6E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 Gene3D G3DSA:3.40.50.720 6 238 4.0E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 8.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 8.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 4.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 4.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.5E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PANTHER PTHR24322 9 142 8.8E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4019 46c565f4c2c0d53b3045dc312bdc87cd 246 PANTHER PTHR24322 166 197 8.8E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2981 d3f730e39c5c12e6ea178d00054d09c8 166 PANTHER PTHR12418 1 166 8.4E-40 T 19-04-2016 AMED_2981 d3f730e39c5c12e6ea178d00054d09c8 166 Gene3D G3DSA:3.10.129.10 28 166 1.4E-48 T 19-04-2016 IPR029069 HotDog domain AMED_2981 d3f730e39c5c12e6ea178d00054d09c8 166 Pfam PF03061 Thioesterase superfamily 78 155 7.2E-13 T 19-04-2016 IPR006683 Thioesterase domain AMED_2981 d3f730e39c5c12e6ea178d00054d09c8 166 PANTHER PTHR12418:SF25 1 166 8.4E-40 T 19-04-2016 AMED_2981 d3f730e39c5c12e6ea178d00054d09c8 166 SUPERFAMILY SSF54637 13 163 6.43E-42 T 19-04-2016 IPR029069 HotDog domain AMED_2981 d3f730e39c5c12e6ea178d00054d09c8 166 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 47 164 2.2E-24 T 19-04-2016 IPR003736 Phenylacetic acid degradation-related domain AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 299 124.948 T 19-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 PIRSF PIRSF015689 1 299 1.1E-129 T 19-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 SUPERFAMILY SSF51735 7 149 5.44E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 SUPERFAMILY SSF55347 125 270 2.75E-59 T 19-04-2016 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 PANTHER PTHR41706 1 299 4.3E-116 T 19-04-2016 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 111 9.7E-10 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 SMART SM00859 5 117 9.4E-4 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 125 270 1.0E-62 T 19-04-2016 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 Gene3D G3DSA:3.30.360.10 138 270 6.2E-66 T 19-04-2016 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 5 293 4.0E-128 T 19-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AMED_4219 86c8ae3bb476f581a89d9400c3ac5c86 299 Gene3D G3DSA:3.40.50.720 4 137 7.5E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5195 364d9f16a7cf26294da7740831236de2 434 Gene3D G3DSA:3.40.190.10 169 361 8.6E-24 T 19-04-2016 AMED_5195 364d9f16a7cf26294da7740831236de2 434 SUPERFAMILY SSF53850 40 432 4.92E-47 T 19-04-2016 AMED_5195 364d9f16a7cf26294da7740831236de2 434 PANTHER PTHR30061:SF28 57 427 1.3E-81 T 19-04-2016 AMED_5195 364d9f16a7cf26294da7740831236de2 434 PANTHER PTHR30061 57 427 1.3E-81 T 19-04-2016 AMED_5195 364d9f16a7cf26294da7740831236de2 434 Pfam PF13416 Bacterial extracellular solute-binding protein 57 362 4.2E-32 T 19-04-2016 AMED_5195 364d9f16a7cf26294da7740831236de2 434 Gene3D G3DSA:3.40.190.10 52 168 3.3E-10 T 19-04-2016 AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 SUPERFAMILY SSF53067 85 384 3.89E-47 T 19-04-2016 AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 PANTHER PTHR18964:SF123 63 383 2.0E-54 T 19-04-2016 AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 Gene3D G3DSA:3.30.420.40 82 227 9.3E-39 T 19-04-2016 AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 Gene3D G3DSA:1.10.10.10 13 79 1.8E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 Pfam PF00480 ROK family 88 382 7.1E-46 T 19-04-2016 IPR000600 ROK family AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 Gene3D G3DSA:3.30.420.40 228 365 8.3E-35 T 19-04-2016 AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 SUPERFAMILY SSF46785 13 77 1.82E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 PANTHER PTHR18964 63 383 2.0E-54 T 19-04-2016 AMED_3418 03922ed9fa9f12da7b00fb6a50be1d4d 403 Pfam PF12802 MarR family 17 67 6.1E-7 T 19-04-2016 AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 Pfam PF00005 ABC transporter 19 173 4.9E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 PANTHER PTHR24220 5 255 4.9E-140 T 19-04-2016 AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 PANTHER PTHR24220:SF520 5 255 4.9E-140 T 19-04-2016 AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 SUPERFAMILY SSF52540 3 223 2.77E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 SMART SM00382 28 221 1.4E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1885 dc3c5291f2dec97e5bd397dbd3548215 259 Gene3D G3DSA:3.40.50.300 3 231 1.3E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6865 ca97ac5e050914c021d8c20c08d739f7 268 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 12 148 2.2E-26 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_6865 ca97ac5e050914c021d8c20c08d739f7 268 Pfam PF08608 Wyosine base formation 184 231 4.9E-7 T 19-04-2016 IPR013917 tRNA wybutosine-synthesis MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMED_6865 ca97ac5e050914c021d8c20c08d739f7 268 Gene3D G3DSA:1.20.120.450 5 117 2.2E-9 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_6865 ca97ac5e050914c021d8c20c08d739f7 268 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 11 225 1.7E-42 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_6865 ca97ac5e050914c021d8c20c08d739f7 268 SUPERFAMILY SSF109854 3 153 4.03E-26 T 19-04-2016 AMED_6865 ca97ac5e050914c021d8c20c08d739f7 268 TIGRFAM TIGR03084 TIGR03084: TIGR03084 family protein 7 258 8.0E-94 T 19-04-2016 IPR017518 Conserved hypothetical protein CHP03084 AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 PANTHER PTHR22925:SF11 4 287 1.2E-103 T 19-04-2016 AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 SUPERFAMILY SSF75005 4 290 1.43E-87 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 Pfam PF04616 Glycosyl hydrolases family 43 2 282 8.3E-86 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 Gene3D G3DSA:2.60.120.200 332 458 1.1E-5 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 PANTHER PTHR22925 4 287 1.2E-103 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 SUPERFAMILY SSF49899 297 460 1.11E-8 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_6414 992e1fb85b834de2659ab9bcbad60f77 476 Gene3D G3DSA:2.115.10.20 3 293 1.1E-88 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_1171 480bb3c1cebdcc0f7cdf118034f3d459 193 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 28 140 4.7E-29 T 19-04-2016 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_1171 480bb3c1cebdcc0f7cdf118034f3d459 193 SUPERFAMILY SSF48600 33 186 9.16E-34 T 19-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_1171 480bb3c1cebdcc0f7cdf118034f3d459 193 SMART SM00830 33 104 5.0E-15 T 19-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_1171 480bb3c1cebdcc0f7cdf118034f3d459 193 Gene3D G3DSA:1.20.59.10 34 102 3.5E-9 T 19-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_1171 480bb3c1cebdcc0f7cdf118034f3d459 193 Pfam PF01817 Chorismate mutase type II 34 101 2.8E-9 T 19-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 Gene3D G3DSA:1.20.120.640 277 362 4.6E-16 T 19-04-2016 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 1 283 1.2E-112 T 19-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 Pfam PF09190 DALR domain 310 363 3.2E-10 T 19-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 35 44 1.0E-22 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 214 1.0E-22 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 162 180 1.0E-22 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 SMART SM00840 310 371 1.3E-11 T 19-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 SUPERFAMILY SSF47323 297 432 4.84E-31 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 431 4.3E-121 T 19-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 PANTHER PTHR10890 1 430 2.2E-182 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 433 31.267 T 19-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 AMED_8684 bbabadb6946ef8608df20556db8c8603 435 Gene3D G3DSA:3.40.50.620 1 275 3.8E-92 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_8684 bbabadb6946ef8608df20556db8c8603 435 SUPERFAMILY SSF52374 1 281 6.17E-82 T 19-04-2016 AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 SUPERFAMILY SSF50370 363 487 2.65E-39 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 Gene3D G3DSA:2.80.10.50 364 487 7.9E-41 T 19-04-2016 AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 SMART SM00458 363 489 1.2E-34 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 Gene3D G3DSA:3.20.20.80 41 302 3.8E-24 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 Pfam PF00652 Ricin-type beta-trefoil lectin domain 364 486 2.8E-29 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 PANTHER PTHR11675 366 487 1.9E-24 T 19-04-2016 AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 SUPERFAMILY SSF51445 40 302 1.77E-21 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7828 5703d0bc8f9dffbe5fb951057612607f 489 PANTHER PTHR11675:SF55 366 487 1.9E-24 T 19-04-2016 AMED_1689 3e8c7b9410cfca9736c1d51ba0b3639b 293 Pfam PF12680 SnoaL-like domain 13 115 7.7E-13 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_1689 3e8c7b9410cfca9736c1d51ba0b3639b 293 SUPERFAMILY SSF54427 162 284 7.07E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_1689 3e8c7b9410cfca9736c1d51ba0b3639b 293 SUPERFAMILY SSF54427 5 125 2.6E-24 T 19-04-2016 IPR032710 NTF2-like domain AMED_1689 3e8c7b9410cfca9736c1d51ba0b3639b 293 Gene3D G3DSA:3.10.450.50 1 140 9.9E-38 T 19-04-2016 IPR032710 NTF2-like domain AMED_1689 3e8c7b9410cfca9736c1d51ba0b3639b 293 Gene3D G3DSA:3.10.450.50 143 292 4.5E-33 T 19-04-2016 IPR032710 NTF2-like domain AMED_5482 72b01104e576a4e58af37e57dc45743d 211 SUPERFAMILY SSF54631 4 134 3.83E-29 T 19-04-2016 AMED_5482 72b01104e576a4e58af37e57dc45743d 211 Gene3D G3DSA:3.10.580.10 5 135 2.1E-27 T 19-04-2016 AMED_5482 72b01104e576a4e58af37e57dc45743d 211 PIRSF PIRSF036990 4 211 3.6E-43 T 19-04-2016 IPR017080 Uncharacterised conserved protein UCP036990, CBS, BON AMED_5482 72b01104e576a4e58af37e57dc45743d 211 SMART SM00116 89 136 6.0E-5 T 19-04-2016 IPR000644 CBS domain AMED_5482 72b01104e576a4e58af37e57dc45743d 211 SMART SM00116 13 61 1.7E-7 T 19-04-2016 IPR000644 CBS domain AMED_5482 72b01104e576a4e58af37e57dc45743d 211 Pfam PF00571 CBS domain 82 133 1.2E-11 T 19-04-2016 IPR000644 CBS domain AMED_5482 72b01104e576a4e58af37e57dc45743d 211 Pfam PF00571 CBS domain 6 58 2.0E-11 T 19-04-2016 IPR000644 CBS domain AMED_5482 72b01104e576a4e58af37e57dc45743d 211 Pfam PF04972 BON domain 139 205 2.9E-8 T 19-04-2016 IPR007055 BON domain AMED_5482 72b01104e576a4e58af37e57dc45743d 211 PANTHER PTHR11911 5 135 1.7E-24 T 19-04-2016 AMED_1681 6ebf5001361fbe5c02460d1f43d708db 313 SUPERFAMILY SSF52283 46 133 6.8E-7 T 19-04-2016 AMED_1681 6ebf5001361fbe5c02460d1f43d708db 313 Gene3D G3DSA:3.40.50.720 99 279 5.4E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1681 6ebf5001361fbe5c02460d1f43d708db 313 PANTHER PTHR10996:SF160 69 309 6.2E-65 T 19-04-2016 AMED_1681 6ebf5001361fbe5c02460d1f43d708db 313 SUPERFAMILY SSF51735 105 278 5.96E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1681 6ebf5001361fbe5c02460d1f43d708db 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 278 9.5E-44 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_1681 6ebf5001361fbe5c02460d1f43d708db 313 PANTHER PTHR10996 69 309 6.2E-65 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 Pfam PF07687 Peptidase dimerisation domain 197 289 1.5E-9 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 Gene3D G3DSA:3.40.630.10 4 190 7.5E-84 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 Gene3D G3DSA:3.40.630.10 312 415 7.5E-84 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 PANTHER PTHR11014 14 402 6.7E-126 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 PIRSF PIRSF005962 2 417 8.3E-97 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 SUPERFAMILY SSF55031 196 297 1.7E-27 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 Pfam PF01546 Peptidase family M20/M25/M40 74 364 1.8E-22 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 PANTHER PTHR11014:SF89 14 402 6.7E-126 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 SUPERFAMILY SSF53187 5 209 1.7E-73 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 SUPERFAMILY SSF53187 312 414 1.7E-73 T 19-04-2016 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 23 374 9.1E-83 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_2571 60e153a052e7e4436ce747ba051be9b6 432 Gene3D G3DSA:3.30.70.360 193 311 6.6E-34 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_1066 15f1b00b0c0b4914d709eed0654aa626 214 Pfam PF01596 O-methyltransferase 32 210 4.0E-27 T 19-04-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 AMED_1066 15f1b00b0c0b4914d709eed0654aa626 214 SUPERFAMILY SSF53335 36 211 1.22E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1066 15f1b00b0c0b4914d709eed0654aa626 214 Gene3D G3DSA:3.40.50.150 17 211 1.2E-48 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1066 15f1b00b0c0b4914d709eed0654aa626 214 PANTHER PTHR10509:SF18 44 211 1.3E-57 T 19-04-2016 AMED_1066 15f1b00b0c0b4914d709eed0654aa626 214 PANTHER PTHR10509 44 211 1.3E-57 T 19-04-2016 AMED_5663 1c5faf7969dd52e15ff4281f2b231937 378 PANTHER PTHR30425 76 354 3.9E-68 T 19-04-2016 AMED_5663 1c5faf7969dd52e15ff4281f2b231937 378 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 152 342 9.8E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5663 1c5faf7969dd52e15ff4281f2b231937 378 SUPERFAMILY SSF161098 86 340 1.83E-32 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5663 1c5faf7969dd52e15ff4281f2b231937 378 PANTHER PTHR30425:SF0 76 354 3.9E-68 T 19-04-2016 AMED_5663 1c5faf7969dd52e15ff4281f2b231937 378 Gene3D G3DSA:1.10.3720.10 120 343 3.1E-33 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5663 1c5faf7969dd52e15ff4281f2b231937 378 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 77 343 2.1E-62 T 19-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 ProSitePatterns PS00455 Putative AMP-binding domain signature. 135 146 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0746 8a4c130852f22cd4391718799544cbe1 474 Pfam PF00501 AMP-binding enzyme 15 382 2.2E-78 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 Gene3D G3DSA:2.30.38.10 302 376 5.9E-26 T 19-04-2016 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 PANTHER PTHR24096 4 472 1.5E-194 T 19-04-2016 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 Gene3D G3DSA:3.40.50.980 14 140 1.0E-21 T 19-04-2016 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 Gene3D G3DSA:3.40.50.980 141 301 1.6E-32 T 19-04-2016 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 Gene3D G3DSA:3.30.300.30 379 472 1.2E-29 T 19-04-2016 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 Pfam PF13193 AMP-binding enzyme C-terminal domain 392 466 1.7E-20 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_0746 8a4c130852f22cd4391718799544cbe1 474 SUPERFAMILY SSF56801 14 472 4.58E-125 T 19-04-2016 AMED_0746 8a4c130852f22cd4391718799544cbe1 474 PANTHER PTHR24096:SF206 4 472 1.5E-194 T 19-04-2016 AMED_5985 fc545b3232bdde37acf05864be276fcd 189 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_5985 fc545b3232bdde37acf05864be276fcd 189 PANTHER PTHR30055 2 187 9.2E-28 T 19-04-2016 AMED_5985 fc545b3232bdde37acf05864be276fcd 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 1.6E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5985 fc545b3232bdde37acf05864be276fcd 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.7E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5985 fc545b3232bdde37acf05864be276fcd 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.7E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5985 fc545b3232bdde37acf05864be276fcd 189 Gene3D G3DSA:1.10.357.10 2 188 2.1E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5985 fc545b3232bdde37acf05864be276fcd 189 SUPERFAMILY SSF48498 81 187 4.52E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5985 fc545b3232bdde37acf05864be276fcd 189 SUPERFAMILY SSF46689 2 76 5.99E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1405 57ea507f0196df832f8d39ad75d539a7 484 Gene3D G3DSA:3.20.20.80 43 319 1.4E-21 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1405 57ea507f0196df832f8d39ad75d539a7 484 SMART SM00458 348 481 1.2E-5 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1405 57ea507f0196df832f8d39ad75d539a7 484 SUPERFAMILY SSF51445 43 317 3.76E-21 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1405 57ea507f0196df832f8d39ad75d539a7 484 SUPERFAMILY SSF50370 348 481 3.06E-24 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1405 57ea507f0196df832f8d39ad75d539a7 484 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 385 468 1.8E-16 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1405 57ea507f0196df832f8d39ad75d539a7 484 Gene3D G3DSA:2.80.10.50 348 482 4.0E-24 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 Gene3D G3DSA:3.30.300.30 436 526 2.1E-25 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 175 186 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 Gene3D G3DSA:3.40.50.980 10 180 1.1E-41 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 Gene3D G3DSA:3.40.50.980 181 339 5.4E-22 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 Gene3D G3DSA:2.30.38.10 362 432 5.0E-7 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 523 6.9E-16 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 SUPERFAMILY SSF56801 4 535 1.24E-112 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 PANTHER PTHR24095 3 214 6.3E-121 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 PANTHER PTHR24095 231 525 6.3E-121 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 PANTHER PTHR24095:SF184 3 214 6.3E-121 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 PANTHER PTHR24095:SF184 231 525 6.3E-121 T 19-04-2016 AMED_2559 f135bfcd411b318bd01af65a7b96c219 544 Pfam PF00501 AMP-binding enzyme 16 437 4.0E-61 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 Gene3D G3DSA:1.10.10.10 13 91 1.5E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 PANTHER PTHR30346 13 314 1.4E-76 T 19-04-2016 AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 Pfam PF03466 LysR substrate binding domain 97 296 5.5E-47 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 PANTHER PTHR30346:SF8 13 314 1.4E-76 T 19-04-2016 AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 Gene3D G3DSA:3.40.190.10 183 269 1.1E-31 T 19-04-2016 AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 1.1E-15 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 SUPERFAMILY SSF53850 96 298 4.83E-42 T 19-04-2016 AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 SUPERFAMILY SSF46785 13 118 9.19E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1063 ed9cb65f02f9e8dbc14170e02356c069 321 Gene3D G3DSA:3.40.190.10 97 182 1.5E-20 T 19-04-2016 AMED_6113 a911a62caeb9dcdbfed8cbc02488432d 246 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 242 1.0E-32 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_6113 a911a62caeb9dcdbfed8cbc02488432d 246 SUPERFAMILY SSF52096 3 243 1.03E-47 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6113 a911a62caeb9dcdbfed8cbc02488432d 246 PANTHER PTHR11941 3 243 1.5E-44 T 19-04-2016 AMED_6113 a911a62caeb9dcdbfed8cbc02488432d 246 PANTHER PTHR11941:SF45 3 243 1.5E-44 T 19-04-2016 AMED_6113 a911a62caeb9dcdbfed8cbc02488432d 246 Gene3D G3DSA:3.90.226.10 3 242 1.1E-40 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3197 03c7b6f1330b8ebc9f4d13e9499e874d 276 Gene3D G3DSA:1.10.510.10 75 193 5.6E-25 T 19-04-2016 AMED_3197 03c7b6f1330b8ebc9f4d13e9499e874d 276 Gene3D G3DSA:3.30.200.20 2 74 1.0E-11 T 19-04-2016 AMED_3197 03c7b6f1330b8ebc9f4d13e9499e874d 276 Pfam PF00069 Protein kinase domain 52 193 1.3E-17 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_3197 03c7b6f1330b8ebc9f4d13e9499e874d 276 PANTHER PTHR24362 1 228 4.5E-42 T 19-04-2016 AMED_3197 03c7b6f1330b8ebc9f4d13e9499e874d 276 PANTHER PTHR24362:SF160 1 228 4.5E-42 T 19-04-2016 AMED_3197 03c7b6f1330b8ebc9f4d13e9499e874d 276 SUPERFAMILY SSF56112 2 226 2.11E-39 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2174 3e590a782ae1b3c8f4881ed9c78d82e7 661 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 44 657 2.6E-129 T 19-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein AMED_2174 3e590a782ae1b3c8f4881ed9c78d82e7 661 PANTHER PTHR33362:SF1 11 659 6.6E-140 T 19-04-2016 AMED_2174 3e590a782ae1b3c8f4881ed9c78d82e7 661 PANTHER PTHR33362 11 659 6.6E-140 T 19-04-2016 AMED_2174 3e590a782ae1b3c8f4881ed9c78d82e7 661 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 138 571 3.5E-60 T 19-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 Pfam PF11897 Protein of unknown function (DUF3417) 13 120 1.7E-33 T 19-04-2016 IPR024517 Glycogen phosphorylase, domain of unknown function DUF3417 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 Gene3D G3DSA:3.40.50.2000 24 418 8.1E-87 T 19-04-2016 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 PANTHER PTHR11468:SF9 35 470 6.0E-243 T 19-04-2016 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 PANTHER PTHR11468:SF9 488 774 6.0E-243 T 19-04-2016 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 Gene3D G3DSA:3.40.50.2000 419 706 1.5E-80 T 19-04-2016 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 Pfam PF00343 Carbohydrate phosphorylase 266 615 3.2E-19 T 19-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 Pfam PF00343 Carbohydrate phosphorylase 125 170 3.5E-6 T 19-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 PANTHER PTHR11468 35 470 6.0E-243 T 19-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 PANTHER PTHR11468 488 774 6.0E-243 T 19-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 593 605 - T 19-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 SUPERFAMILY SSF53756 4 728 7.85E-194 T 19-04-2016 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 107 703 1.7E-225 T 19-04-2016 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMED_1604 e309e7e2f53a1bfddc53ad445e91d2ac 842 PIRSF PIRSF000460 1 791 4.5E-248 T 19-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 AMED_7658 e3854ffdfddaf44fd46d494ea91f44af 164 Pfam PF03050 Transposase IS66 family 48 140 2.2E-20 T 19-04-2016 IPR004291 Transposase, IS66 AMED_7658 e3854ffdfddaf44fd46d494ea91f44af 164 PANTHER PTHR33678 5 135 1.5E-20 T 19-04-2016 AMED_7658 e3854ffdfddaf44fd46d494ea91f44af 164 Pfam PF13005 zinc-finger binding domain of transposase IS66 4 31 1.0E-8 T 19-04-2016 IPR024474 Zinc-finger binding domain of transposase IS66 AMED_7658 e3854ffdfddaf44fd46d494ea91f44af 164 PANTHER PTHR33678:SF2 5 135 1.5E-20 T 19-04-2016 AMED_3630 5d8532c2892b663942e7549ec0564d6a 453 Gene3D G3DSA:3.30.470.20 156 350 2.6E-15 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_3630 5d8532c2892b663942e7549ec0564d6a 453 Pfam PF02655 ATP-grasp domain 192 346 3.0E-7 T 19-04-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 AMED_3630 5d8532c2892b663942e7549ec0564d6a 453 SUPERFAMILY SSF56059 161 368 7.95E-22 T 19-04-2016 AMED_2054 9cacbf3004c2b064986747c0b23c6995 227 SUPERFAMILY SSF55166 71 224 9.42E-21 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_2054 9cacbf3004c2b064986747c0b23c6995 227 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 145 222 1.5E-19 T 19-04-2016 AMED_2835 7451b0fb5162b0563ea33ce8736be4ed 133 SUPERFAMILY SSF117916 34 127 1.21E-28 T 19-04-2016 AMED_2835 7451b0fb5162b0563ea33ce8736be4ed 133 Pfam PF01883 Domain of unknown function DUF59 34 99 2.4E-19 T 19-04-2016 IPR002744 Domain of unknown function DUF59 AMED_2835 7451b0fb5162b0563ea33ce8736be4ed 133 PANTHER PTHR13696:SF62 19 133 9.7E-18 T 19-04-2016 AMED_2835 7451b0fb5162b0563ea33ce8736be4ed 133 PANTHER PTHR13696 19 133 9.7E-18 T 19-04-2016 AMED_0119 bcb0fca870c3f7d9b93c3433c479b7b8 427 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 144 277 3.5E-17 T 19-04-2016 IPR031811 AlgX, SGNH hydrolase-like domain KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 AMED_0529 ed0f6d20262c0d3d164b07fb35fd8ff6 291 PANTHER PTHR33269 16 215 2.9E-60 T 19-04-2016 AMED_0529 ed0f6d20262c0d3d164b07fb35fd8ff6 291 PANTHER PTHR33269:SF1 16 215 2.9E-60 T 19-04-2016 AMED_0529 ed0f6d20262c0d3d164b07fb35fd8ff6 291 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 34 182 9.9E-35 T 19-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 PANTHER PTHR30012 2 400 6.9E-115 T 19-04-2016 AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 161 189 - T 19-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 PANTHER PTHR30012:SF0 2 400 6.9E-115 T 19-04-2016 AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 62 74 3.4E-13 T 19-04-2016 IPR003004 GspF/PilC family AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 364 378 3.4E-13 T 19-04-2016 IPR003004 GspF/PilC family AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 161 189 3.4E-13 T 19-04-2016 IPR003004 GspF/PilC family AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 380 399 3.4E-13 T 19-04-2016 IPR003004 GspF/PilC family AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 Pfam PF00482 Type II secretion system (T2SS), protein F 269 389 4.5E-25 T 19-04-2016 IPR018076 Type II secretion system F domain AMED_4450 9c3d572c70b18869cc02de1e63ba0af6 401 Pfam PF00482 Type II secretion system (T2SS), protein F 67 189 7.2E-30 T 19-04-2016 IPR018076 Type II secretion system F domain AMED_1736 8e2dd910ef416294369cb131d12a6e6d 174 Pfam PF04205 FMN-binding domain 101 168 3.7E-7 T 19-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 AMED_1736 8e2dd910ef416294369cb131d12a6e6d 174 SMART SM00900 99 171 7.1E-7 T 19-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 AMED_2700 c81369c5b003f810629ffa0ccbb01e11 200 SUPERFAMILY SSF160387 90 189 2.09E-13 T 19-04-2016 AMED_2700 c81369c5b003f810629ffa0ccbb01e11 200 Pfam PF03243 Alkylmercury lyase 90 190 5.8E-11 T 19-04-2016 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AMED_6077 ed192a3aaf1276bb3f146d72692699d4 147 Gene3D G3DSA:3.30.530.20 6 145 5.4E-11 T 19-04-2016 IPR023393 START-like domain AMED_6077 ed192a3aaf1276bb3f146d72692699d4 147 SUPERFAMILY SSF55961 19 146 6.38E-15 T 19-04-2016 AMED_6077 ed192a3aaf1276bb3f146d72692699d4 147 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 19 135 6.2E-7 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_3289 82aaea38a1dcd2b074278a70eb2cd507 243 SUPERFAMILY SSF49899 27 243 9.27E-69 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3289 82aaea38a1dcd2b074278a70eb2cd507 243 PANTHER PTHR34002:SF5 2 229 5.8E-45 T 19-04-2016 AMED_3289 82aaea38a1dcd2b074278a70eb2cd507 243 PANTHER PTHR34002 2 229 5.8E-45 T 19-04-2016 AMED_3289 82aaea38a1dcd2b074278a70eb2cd507 243 Pfam PF01670 Glycosyl hydrolase family 12 39 243 4.2E-59 T 19-04-2016 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 AMED_3289 82aaea38a1dcd2b074278a70eb2cd507 243 Gene3D G3DSA:2.60.120.180 25 242 1.6E-74 T 19-04-2016 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3807 a7f548055c21362091469fea36a701e4 292 PRINTS PR00412 Epoxide hydrolase signature 103 116 2.6E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3807 a7f548055c21362091469fea36a701e4 292 PRINTS PR00412 Epoxide hydrolase signature 267 289 2.6E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3807 a7f548055c21362091469fea36a701e4 292 PRINTS PR00412 Epoxide hydrolase signature 36 54 2.6E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3807 a7f548055c21362091469fea36a701e4 292 Gene3D G3DSA:3.40.50.1820 6 292 6.6E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3807 a7f548055c21362091469fea36a701e4 292 SUPERFAMILY SSF53474 6 292 2.45E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3807 a7f548055c21362091469fea36a701e4 292 PANTHER PTHR10992:SF778 1 292 5.1E-58 T 19-04-2016 AMED_3807 a7f548055c21362091469fea36a701e4 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 3.7E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3807 a7f548055c21362091469fea36a701e4 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 3.7E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3807 a7f548055c21362091469fea36a701e4 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 3.7E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3807 a7f548055c21362091469fea36a701e4 292 Pfam PF00561 alpha/beta hydrolase fold 31 139 2.9E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3807 a7f548055c21362091469fea36a701e4 292 PANTHER PTHR10992 1 292 5.1E-58 T 19-04-2016 AMED_4735 e32f97020fa8f773179a626a7329d139 456 Gene3D G3DSA:3.20.20.70 149 389 5.9E-9 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4735 e32f97020fa8f773179a626a7329d139 456 PANTHER PTHR30538:SF0 23 445 2.3E-66 T 19-04-2016 AMED_4735 e32f97020fa8f773179a626a7329d139 456 SUPERFAMILY SSF102114 148 407 8.63E-12 T 19-04-2016 AMED_4735 e32f97020fa8f773179a626a7329d139 456 PANTHER PTHR30538 23 445 2.3E-66 T 19-04-2016 AMED_2516 8d133f16d615663fccd03435d5a46801 283 SUPERFAMILY SSF54637 8 155 2.28E-46 T 19-04-2016 IPR029069 HotDog domain AMED_2516 8d133f16d615663fccd03435d5a46801 283 PANTHER PTHR13078 2 269 9.9E-106 T 19-04-2016 AMED_2516 8d133f16d615663fccd03435d5a46801 283 PANTHER PTHR13078:SF5 2 269 9.9E-106 T 19-04-2016 AMED_2516 8d133f16d615663fccd03435d5a46801 283 SUPERFAMILY SSF54637 158 276 3.73E-31 T 19-04-2016 IPR029069 HotDog domain AMED_2516 8d133f16d615663fccd03435d5a46801 283 Pfam PF13452 N-terminal half of MaoC dehydratase 8 133 1.4E-19 T 19-04-2016 AMED_2516 8d133f16d615663fccd03435d5a46801 283 Pfam PF01575 MaoC like domain 160 256 1.2E-28 T 19-04-2016 IPR002539 MaoC-like domain AMED_2516 8d133f16d615663fccd03435d5a46801 283 Gene3D G3DSA:3.10.129.10 2 141 2.0E-53 T 19-04-2016 IPR029069 HotDog domain AMED_2516 8d133f16d615663fccd03435d5a46801 283 Gene3D G3DSA:3.10.129.10 142 279 2.4E-42 T 19-04-2016 IPR029069 HotDog domain AMED_1797 036f37d8cb17a8b522e572ec85a40063 451 SUPERFAMILY SSF51126 28 406 1.62E-62 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_1797 036f37d8cb17a8b522e572ec85a40063 451 Pfam PF14592 Chondroitinase B 28 287 8.0E-36 T 19-04-2016 AMED_1797 036f37d8cb17a8b522e572ec85a40063 451 Gene3D G3DSA:2.160.20.10 28 450 1.6E-88 T 19-04-2016 IPR012334 Pectin lyase fold AMED_5055 4b0711040aad6fdff10c63775faef6dd 386 Pfam PF13424 Tetratricopeptide repeat 285 345 1.3E-13 T 19-04-2016 AMED_5055 4b0711040aad6fdff10c63775faef6dd 386 Gene3D G3DSA:1.25.40.10 239 344 8.1E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5055 4b0711040aad6fdff10c63775faef6dd 386 PANTHER PTHR19959 237 345 2.3E-22 T 19-04-2016 AMED_5055 4b0711040aad6fdff10c63775faef6dd 386 Pfam PF13374 Tetratricopeptide repeat 239 277 0.0021 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5055 4b0711040aad6fdff10c63775faef6dd 386 SUPERFAMILY SSF48452 237 345 3.8E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2416 b46843904a75abe014d4e7444227249d 238 SUPERFAMILY SSF46785 11 71 1.44E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2416 b46843904a75abe014d4e7444227249d 238 SMART SM00529 35 134 4.8E-43 T 19-04-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 AMED_2416 b46843904a75abe014d4e7444227249d 238 PANTHER PTHR33238 11 225 5.8E-76 T 19-04-2016 AMED_2416 b46843904a75abe014d4e7444227249d 238 Gene3D G3DSA:1.10.10.10 12 81 1.2E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2416 b46843904a75abe014d4e7444227249d 238 SUPERFAMILY SSF50037 139 235 4.35E-17 T 19-04-2016 IPR008988 Transcriptional repressor, C-terminal AMED_2416 b46843904a75abe014d4e7444227249d 238 Gene3D G3DSA:1.10.60.10 84 142 5.7E-31 T 19-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AMED_2416 b46843904a75abe014d4e7444227249d 238 Gene3D G3DSA:2.30.30.90 143 234 1.7E-24 T 19-04-2016 AMED_2416 b46843904a75abe014d4e7444227249d 238 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 12 71 6.8E-21 T 19-04-2016 IPR022687 DTXR-type HTH domain GO:0003677 AMED_2416 b46843904a75abe014d4e7444227249d 238 Pfam PF04023 FeoA domain 171 234 1.3E-6 T 19-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMED_2416 b46843904a75abe014d4e7444227249d 238 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 74 142 6.6E-29 T 19-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AMED_2416 b46843904a75abe014d4e7444227249d 238 PANTHER PTHR33238:SF1 11 225 5.8E-76 T 19-04-2016 AMED_2416 b46843904a75abe014d4e7444227249d 238 SUPERFAMILY SSF47979 74 146 3.01E-26 T 19-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AMED_2810 4ffaf9c15ccb6b9702e37eb5005eed6e 326 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 37 315 1.3E-96 T 19-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 AMED_2810 4ffaf9c15ccb6b9702e37eb5005eed6e 326 Pfam PF01040 UbiA prenyltransferase family 50 298 2.8E-64 T 19-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 AMED_2810 4ffaf9c15ccb6b9702e37eb5005eed6e 326 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 34 316 18.734 T 19-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 AMED_2810 4ffaf9c15ccb6b9702e37eb5005eed6e 326 PANTHER PTHR11048 30 314 2.3E-72 T 19-04-2016 AMED_2810 4ffaf9c15ccb6b9702e37eb5005eed6e 326 PANTHER PTHR11048:SF3 30 314 2.3E-72 T 19-04-2016 AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 PANTHER PTHR10992 3 256 8.8E-43 T 19-04-2016 AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.6E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 201 215 1.6E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 101 1.6E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 1.6E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 SUPERFAMILY SSF53474 1 254 8.66E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 Gene3D G3DSA:3.40.50.1820 2 255 3.5E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6721 922be2b3896a663d26208cf6e14a9d4d 258 Pfam PF00561 alpha/beta hydrolase fold 20 237 3.3E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF55021 703 781 1.58E-13 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF81271 434 506 4.14E-21 T 19-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF13291 ACT domain 703 779 5.8E-16 T 19-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:3.30.460.10 235 382 2.9E-46 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 SMART SM00954 292 402 1.6E-60 T 19-04-2016 IPR007685 RelA/SpoT GO:0015969 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 PANTHER PTHR21262 31 782 0.0 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:3.30.70.260 705 777 1.6E-13 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF02824 TGS domain 447 506 1.0E-22 T 19-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 SMART SM00471 100 210 1.5E-12 T 19-04-2016 IPR003607 HD/PDEase domain AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF109604 61 247 6.59E-71 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Gene3D G3DSA:3.10.20.30 446 508 7.5E-25 T 19-04-2016 IPR012675 Beta-grasp domain AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF13328 HD domain 85 232 2.2E-49 T 19-04-2016 IPR003607 HD/PDEase domain AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 SUPERFAMILY SSF81301 237 451 3.27E-60 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 Pfam PF04607 Region found in RelA / SpoT proteins 292 401 6.8E-36 T 19-04-2016 IPR007685 RelA/SpoT GO:0015969 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 PANTHER PTHR21262:SF0 31 782 0.0 T 19-04-2016 AMED_5294 e83bfd69f66ea9cda844d6822ab49ae4 784 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 85 779 1.4E-263 T 19-04-2016 IPR004811 RelA/SpoT family GO:0015969 AMED_2837 8d6a4f953add6c1f1328009232bbdc2b 110 PANTHER PTHR36116:SF1 1 108 1.0E-47 T 19-04-2016 AMED_2837 8d6a4f953add6c1f1328009232bbdc2b 110 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 2 109 9.2E-45 T 19-04-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMED_2837 8d6a4f953add6c1f1328009232bbdc2b 110 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 3 108 21.241 T 19-04-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMED_2837 8d6a4f953add6c1f1328009232bbdc2b 110 SUPERFAMILY SSF103481 9 107 4.97E-10 T 19-04-2016 AMED_2837 8d6a4f953add6c1f1328009232bbdc2b 110 PANTHER PTHR36116 1 108 1.0E-47 T 19-04-2016 AMED_2996 a8ea0862d32022ac3e62a474416927c3 293 Pfam PF00296 Luciferase-like monooxygenase 16 271 2.2E-37 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2996 a8ea0862d32022ac3e62a474416927c3 293 PANTHER PTHR30011 8 291 4.3E-24 T 19-04-2016 AMED_2996 a8ea0862d32022ac3e62a474416927c3 293 Gene3D G3DSA:3.20.20.30 14 292 1.5E-42 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2996 a8ea0862d32022ac3e62a474416927c3 293 SUPERFAMILY SSF51679 10 292 3.4E-46 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2996 a8ea0862d32022ac3e62a474416927c3 293 TIGRFAM TIGR03564 F420_MSMEG_4879: F420-dependent oxidoreductase, MSMEG_4879 family 21 275 1.9E-83 T 19-04-2016 IPR019910 Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted AMED_8694 6ac21b184d2e30bd6eb09131885c62b0 408 PANTHER PTHR35791 6 408 5.8E-61 T 19-04-2016 AMED_8694 6ac21b184d2e30bd6eb09131885c62b0 408 Pfam PF04286 Protein of unknown function (DUF445) 23 134 7.6E-9 T 19-04-2016 IPR007383 Protein of unknown function DUF445 AMED_8694 6ac21b184d2e30bd6eb09131885c62b0 408 PANTHER PTHR35791:SF1 6 408 5.8E-61 T 19-04-2016 AMED_0584 32fbec084729a9c8f7cfd8f1133bd9b9 315 Pfam PF00583 Acetyltransferase (GNAT) family 216 302 1.3E-8 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_0584 32fbec084729a9c8f7cfd8f1133bd9b9 315 Gene3D G3DSA:3.40.630.30 156 306 1.9E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0584 32fbec084729a9c8f7cfd8f1133bd9b9 315 SUPERFAMILY SSF55729 118 307 3.6E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0584 32fbec084729a9c8f7cfd8f1133bd9b9 315 PANTHER PTHR23091 127 303 6.7E-14 T 19-04-2016 AMED_6531 f45d6b5cb33cb06081a57ca74605fa56 247 Pfam PF13490 Putative zinc-finger 5 39 6.6E-10 T 19-04-2016 IPR027383 Putative zinc-finger AMED_3484 c7ed08860ed1ec26aa82be6d7f9d4de9 112 Pfam PF00893 Small Multidrug Resistance protein 3 91 8.7E-13 T 19-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 AMED_3484 c7ed08860ed1ec26aa82be6d7f9d4de9 112 PANTHER PTHR30561 1 110 2.3E-17 T 19-04-2016 AMED_3484 c7ed08860ed1ec26aa82be6d7f9d4de9 112 PANTHER PTHR30561:SF1 1 110 2.3E-17 T 19-04-2016 AMED_3484 c7ed08860ed1ec26aa82be6d7f9d4de9 112 SUPERFAMILY SSF103481 7 104 6.02E-11 T 19-04-2016 AMED_3888 d02539d24c44905500426cc3e353da19 251 PANTHER PTHR12993 16 166 3.6E-27 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_3888 d02539d24c44905500426cc3e353da19 251 PANTHER PTHR12993:SF11 16 166 3.6E-27 T 19-04-2016 AMED_3888 d02539d24c44905500426cc3e353da19 251 Pfam PF02585 GlcNAc-PI de-N-acetylase 18 144 2.1E-23 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_3888 d02539d24c44905500426cc3e353da19 251 SUPERFAMILY SSF102588 15 244 4.58E-43 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_3888 d02539d24c44905500426cc3e353da19 251 Gene3D G3DSA:3.40.50.10320 15 250 4.1E-51 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_5433 336483fadaa1068330ce9a9fe058846a 81 Gene3D G3DSA:1.10.1200.10 3 76 2.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5433 336483fadaa1068330ce9a9fe058846a 81 ProSitePatterns PS00012 Phosphopantetheine attachment site. 33 48 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_5433 336483fadaa1068330ce9a9fe058846a 81 Pfam PF00550 Phosphopantetheine attachment site 21 74 1.1E-7 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5433 336483fadaa1068330ce9a9fe058846a 81 SUPERFAMILY SSF47336 9 76 4.45E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4370 6f2db7d913407cc7966e607fa2928dc1 410 Pfam PF07690 Major Facilitator Superfamily 21 256 7.2E-22 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4370 6f2db7d913407cc7966e607fa2928dc1 410 PANTHER PTHR23517 8 410 1.1E-53 T 19-04-2016 AMED_4370 6f2db7d913407cc7966e607fa2928dc1 410 Gene3D G3DSA:1.20.1250.20 214 397 1.2E-20 T 19-04-2016 AMED_4370 6f2db7d913407cc7966e607fa2928dc1 410 Gene3D G3DSA:1.20.1250.20 19 197 4.9E-24 T 19-04-2016 AMED_4370 6f2db7d913407cc7966e607fa2928dc1 410 SUPERFAMILY SSF103473 17 396 1.57E-50 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4370 6f2db7d913407cc7966e607fa2928dc1 410 PANTHER PTHR23517:SF2 8 410 1.1E-53 T 19-04-2016 AMED_7300 c4c8c9fd03fd25de910861dca4854f82 859 SUPERFAMILY SSF52540 432 791 1.35E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7300 c4c8c9fd03fd25de910861dca4854f82 859 Pfam PF12846 AAA-like domain 475 836 6.5E-46 T 19-04-2016 AMED_7300 c4c8c9fd03fd25de910861dca4854f82 859 Gene3D G3DSA:3.40.50.300 654 787 2.8E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7300 c4c8c9fd03fd25de910861dca4854f82 859 Gene3D G3DSA:3.40.50.300 472 544 2.8E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2134 ee49edde02b725d7a2bf123ddc084b56 488 Pfam PF00899 ThiF family 183 426 6.9E-31 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_2134 ee49edde02b725d7a2bf123ddc084b56 488 SUPERFAMILY SSF69572 183 468 1.96E-36 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_2134 ee49edde02b725d7a2bf123ddc084b56 488 PANTHER PTHR10953 183 251 1.4E-16 T 19-04-2016 AMED_2134 ee49edde02b725d7a2bf123ddc084b56 488 PANTHER PTHR10953 272 339 1.4E-16 T 19-04-2016 AMED_2134 ee49edde02b725d7a2bf123ddc084b56 488 Gene3D G3DSA:3.40.50.720 182 467 4.0E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1005 2fa2bc1bb4c04b90876f148f92febc37 399 PANTHER PTHR33392 3 138 1.4E-62 T 19-04-2016 AMED_1005 2fa2bc1bb4c04b90876f148f92febc37 399 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 94 263 7.2E-41 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_1005 2fa2bc1bb4c04b90876f148f92febc37 399 PANTHER PTHR33392:SF6 3 138 1.4E-62 T 19-04-2016 AMED_1005 2fa2bc1bb4c04b90876f148f92febc37 399 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 94 263 3.3E-34 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_1005 2fa2bc1bb4c04b90876f148f92febc37 399 PANTHER PTHR33392 158 333 1.4E-62 T 19-04-2016 AMED_1005 2fa2bc1bb4c04b90876f148f92febc37 399 PANTHER PTHR33392:SF6 158 333 1.4E-62 T 19-04-2016 AMED_1365 9dc4dfa0e3b9ff816e0e6df4f2b6d68d 304 SUPERFAMILY SSF103481 45 136 1.44E-13 T 19-04-2016 AMED_1365 9dc4dfa0e3b9ff816e0e6df4f2b6d68d 304 SUPERFAMILY SSF103481 176 280 7.72E-17 T 19-04-2016 AMED_1365 9dc4dfa0e3b9ff816e0e6df4f2b6d68d 304 PANTHER PTHR32322:SF2 9 299 1.9E-54 T 19-04-2016 AMED_1365 9dc4dfa0e3b9ff816e0e6df4f2b6d68d 304 PANTHER PTHR32322 9 299 1.9E-54 T 19-04-2016 AMED_1365 9dc4dfa0e3b9ff816e0e6df4f2b6d68d 304 Pfam PF00892 EamA-like transporter family 6 132 8.2E-14 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_1365 9dc4dfa0e3b9ff816e0e6df4f2b6d68d 304 Pfam PF00892 EamA-like transporter family 142 275 3.9E-22 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_0873 d991e171f21adcaa0ecc3bae098feec4 277 PANTHER PTHR32243 3 277 3.1E-100 T 19-04-2016 AMED_0873 d991e171f21adcaa0ecc3bae098feec4 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 271 1.3E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0873 d991e171f21adcaa0ecc3bae098feec4 277 SUPERFAMILY SSF161098 8 277 6.82E-58 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0873 d991e171f21adcaa0ecc3bae098feec4 277 Gene3D G3DSA:1.10.3720.10 6 264 4.4E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0873 d991e171f21adcaa0ecc3bae098feec4 277 PANTHER PTHR32243:SF11 3 277 3.1E-100 T 19-04-2016 AMED_4150 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 Gene3D G3DSA:1.20.1250.20 14 189 1.8E-17 T 19-04-2016 AMED_4150 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 SUPERFAMILY SSF103473 6 367 3.66E-32 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4150 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 23 361 1.6E-19 T 19-04-2016 IPR010645 Uncharacterised MFS-type transporter YbfB AMED_4150 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 ProSitePatterns PS00217 Sugar transport proteins signature 2. 109 134 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4150 f5b4a3dda4bb4f1b4a5a985fa022edf1 380 Gene3D G3DSA:1.20.1250.20 208 368 5.5E-8 T 19-04-2016 AMED_8236 214f47171ea62255d6f42b96ee61ee48 288 Pfam PF00296 Luciferase-like monooxygenase 23 168 4.8E-26 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8236 214f47171ea62255d6f42b96ee61ee48 288 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 4 287 2.8E-82 T 19-04-2016 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted AMED_8236 214f47171ea62255d6f42b96ee61ee48 288 Gene3D G3DSA:3.20.20.30 12 281 7.8E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8236 214f47171ea62255d6f42b96ee61ee48 288 PANTHER PTHR30011:SF14 12 274 7.6E-26 T 19-04-2016 AMED_8236 214f47171ea62255d6f42b96ee61ee48 288 PANTHER PTHR30011 12 274 7.6E-26 T 19-04-2016 AMED_8236 214f47171ea62255d6f42b96ee61ee48 288 SUPERFAMILY SSF51679 4 285 9.42E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7231 246e24daa654647ae392e05cda41b2da 337 SUPERFAMILY SSF50129 1 160 1.98E-37 T 19-04-2016 IPR011032 GroES-like AMED_7231 246e24daa654647ae392e05cda41b2da 337 SUPERFAMILY SSF51735 128 296 1.17E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7231 246e24daa654647ae392e05cda41b2da 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_7231 246e24daa654647ae392e05cda41b2da 337 SMART SM00829 10 334 0.0082 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7231 246e24daa654647ae392e05cda41b2da 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 89 4.1E-16 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_7231 246e24daa654647ae392e05cda41b2da 337 Gene3D G3DSA:3.90.180.10 1 88 3.4E-25 T 19-04-2016 IPR011032 GroES-like AMED_7231 246e24daa654647ae392e05cda41b2da 337 Gene3D G3DSA:3.90.180.10 100 152 6.4E-11 T 19-04-2016 IPR011032 GroES-like AMED_7231 246e24daa654647ae392e05cda41b2da 337 PANTHER PTHR11695:SF285 12 337 3.0E-65 T 19-04-2016 AMED_7231 246e24daa654647ae392e05cda41b2da 337 Gene3D G3DSA:3.40.50.720 153 280 3.4E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7231 246e24daa654647ae392e05cda41b2da 337 Pfam PF00107 Zinc-binding dehydrogenase 161 290 2.3E-17 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_7231 246e24daa654647ae392e05cda41b2da 337 PANTHER PTHR11695 12 337 3.0E-65 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 PANTHER PTHR30346:SF2 1 287 2.3E-82 T 19-04-2016 AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 Gene3D G3DSA:1.10.10.10 6 88 9.9E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 PANTHER PTHR30346 1 287 2.3E-82 T 19-04-2016 AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 Gene3D G3DSA:3.40.190.10 90 179 1.7E-14 T 19-04-2016 AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 Pfam PF03466 LysR substrate binding domain 88 287 4.0E-35 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 Gene3D G3DSA:3.40.190.10 180 262 2.1E-15 T 19-04-2016 AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 SUPERFAMILY SSF46785 1 111 4.86E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.9E-13 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_0280 9d5d0199b83aef23e48ed47137ad988f 305 SUPERFAMILY SSF53850 89 287 1.81E-30 T 19-04-2016 AMED_4754 8effc8bf0508a88cd61d19cef194c911 127 Gene3D G3DSA:3.10.450.50 10 125 2.7E-19 T 19-04-2016 IPR032710 NTF2-like domain AMED_4754 8effc8bf0508a88cd61d19cef194c911 127 SUPERFAMILY SSF54427 10 122 2.24E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_4754 8effc8bf0508a88cd61d19cef194c911 127 Pfam PF12680 SnoaL-like domain 17 115 1.5E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6511 f3a8da2039c06728d02e07ba4da602c9 281 PANTHER PTHR14194 1 280 1.5E-58 T 19-04-2016 AMED_6511 f3a8da2039c06728d02e07ba4da602c9 281 SUPERFAMILY SSF51735 9 250 9.07E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6511 f3a8da2039c06728d02e07ba4da602c9 281 Pfam PF05368 NmrA-like family 5 215 1.9E-21 T 19-04-2016 IPR008030 NmrA-like domain AMED_6511 f3a8da2039c06728d02e07ba4da602c9 281 Gene3D G3DSA:3.40.50.720 2 212 1.8E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 PANTHER PTHR30270:SF0 6 313 6.3E-43 T 19-04-2016 AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 Pfam PF00586 AIR synthase related protein, N-terminal domain 34 146 4.9E-17 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 Pfam PF02769 AIR synthase related protein, C-terminal domain 160 312 1.1E-12 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 PANTHER PTHR30270 6 313 6.3E-43 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 PIRSF PIRSF005303 7 327 5.2E-54 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 Gene3D G3DSA:3.30.1330.10 7 148 8.0E-28 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 SUPERFAMILY SSF55326 8 147 1.38E-22 T 19-04-2016 AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 SUPERFAMILY SSF56042 153 312 1.05E-20 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_6750 59573d7ebbfa2c440b68deaa4f9fbc39 350 Gene3D G3DSA:3.90.650.10 154 315 4.5E-23 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PANTHER PTHR11533:SF190 23 612 6.2E-154 T 19-04-2016 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 Pfam PF11838 ERAP1-like C-terminal domain 534 843 1.2E-59 T 19-04-2016 IPR024571 ERAP1-like C-terminal domain AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 SUPERFAMILY SSF55486 213 459 9.52E-78 T 19-04-2016 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 SUPERFAMILY SSF63737 7 202 2.75E-39 T 19-04-2016 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 268 278 3.1E-22 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 137 152 3.1E-22 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 185 200 3.1E-22 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 302 317 3.1E-22 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 321 333 3.1E-22 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 TIGRFAM TIGR02412 pepN_strep_liv: aminopeptidase N 5 850 0.0 T 19-04-2016 IPR012778 Peptidase M1, aminopeptidase GO:0004177|GO:0006508 KEGG: 00480+3.4.11.2|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 PANTHER PTHR11533 23 612 6.2E-154 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 Gene3D G3DSA:1.10.390.10 315 461 5.5E-42 T 19-04-2016 AMED_6815 6304233a697ed4c3e02fb8ab857c0c0b 855 Pfam PF01433 Peptidase family M1 23 394 8.1E-75 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 SUPERFAMILY SSF47741 84 154 2.22E-34 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 SUPERFAMILY SSF54292 2 78 7.21E-22 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 PANTHER PTHR11908 1 146 4.7E-41 T 19-04-2016 AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 Pfam PF01799 [2Fe-2S] binding domain 73 145 3.0E-31 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 Gene3D G3DSA:3.10.20.30 2 74 1.2E-24 T 19-04-2016 IPR012675 Beta-grasp domain AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 Gene3D G3DSA:1.10.150.120 75 156 1.9E-38 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1870 3909d03331c626d3b92a68a44d2e0df4 174 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 57 4.4E-5 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4882 adc3aae1c119204e092a36c6712cc491 102 Pfam PF02416 mttA/Hcf106 family 7 56 2.1E-18 T 19-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMED_4882 adc3aae1c119204e092a36c6712cc491 102 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 1.6E-18 T 19-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMED_4882 adc3aae1c119204e092a36c6712cc491 102 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 79 20.142 T 19-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMED_4882 adc3aae1c119204e092a36c6712cc491 102 PANTHER PTHR33162 7 57 3.4E-12 T 19-04-2016 AMED_8156 4b238e96c8a72442b4907bc74cd1b7fe 249 SUPERFAMILY SSF55315 10 95 2.82E-6 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_8156 4b238e96c8a72442b4907bc74cd1b7fe 249 Gene3D G3DSA:3.30.1330.30 11 94 1.4E-6 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_8156 4b238e96c8a72442b4907bc74cd1b7fe 249 SUPERFAMILY SSF75217 98 243 2.15E-29 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_8156 4b238e96c8a72442b4907bc74cd1b7fe 249 PANTHER PTHR12029 1 242 4.8E-32 T 19-04-2016 AMED_8156 4b238e96c8a72442b4907bc74cd1b7fe 249 Gene3D G3DSA:3.40.1280.10 107 242 5.7E-28 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_8156 4b238e96c8a72442b4907bc74cd1b7fe 249 Pfam PF00588 SpoU rRNA Methylase family 109 239 5.1E-24 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 Gene3D G3DSA:2.80.10.50 524 655 1.3E-25 T 19-04-2016 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 520 595 9.6E-13 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 602 655 1.7E-9 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 340 361 1.7E-11 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 150 166 1.7E-11 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 244 260 1.7E-11 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 PRINTS PR00741 Glycosyl hydrolase family 29 signature 373 395 1.7E-11 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 SUPERFAMILY SSF51445 38 390 2.0E-76 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 Gene3D G3DSA:2.60.40.1180 417 506 2.7E-5 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 Gene3D G3DSA:3.20.20.80 35 390 4.9E-88 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 SMART SM00812 37 449 1.1E-122 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 SUPERFAMILY SSF50370 518 655 9.78E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 Pfam PF01120 Alpha-L-fucosidase 35 387 9.6E-85 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_3291 10969afdc54fccf6eac410f4d1d5ad2d 657 PANTHER PTHR10030 2 442 3.7E-59 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_7837 7d11ce4325085fb0adeee7d1ebbda7ef 375 PANTHER PTHR40088 1 375 7.4E-48 T 19-04-2016 AMED_7837 7d11ce4325085fb0adeee7d1ebbda7ef 375 Gene3D G3DSA:2.160.20.10 9 349 1.3E-66 T 19-04-2016 IPR012334 Pectin lyase fold AMED_7837 7d11ce4325085fb0adeee7d1ebbda7ef 375 SUPERFAMILY SSF51126 9 348 1.0E-46 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_7562 504ee243f7cf0359cae921b40a48eb9c 106 PANTHER PTHR21496 1 98 3.1E-23 T 19-04-2016 AMED_7562 504ee243f7cf0359cae921b40a48eb9c 106 Pfam PF00355 Rieske [2Fe-2S] domain 3 86 3.7E-16 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7562 504ee243f7cf0359cae921b40a48eb9c 106 Gene3D G3DSA:2.102.10.10 2 98 2.7E-28 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7562 504ee243f7cf0359cae921b40a48eb9c 106 PANTHER PTHR21496:SF11 1 98 3.1E-23 T 19-04-2016 AMED_7562 504ee243f7cf0359cae921b40a48eb9c 106 SUPERFAMILY SSF50022 2 98 5.37E-28 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 SMART SM00895 88 214 6.5E-12 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 PANTHER PTHR11751:SF436 22 104 3.9E-15 T 19-04-2016 AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 SUPERFAMILY SSF48008 92 220 5.75E-20 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 PANTHER PTHR11751 22 104 3.9E-15 T 19-04-2016 AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 SMART SM00345 20 78 2.9E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 Gene3D G3DSA:1.20.120.530 87 221 1.6E-26 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 Gene3D G3DSA:1.10.10.10 7 78 1.1E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 SUPERFAMILY SSF46785 12 82 3.02E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 78 2.1E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3019 ecba41e2f311cae7e4a4ec93f0d1b696 224 Pfam PF07729 FCD domain 91 211 6.1E-24 T 19-04-2016 IPR011711 GntR, C-terminal AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 8 102 21.647 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 PANTHER PTHR33449:SF1 5 113 7.1E-44 T 19-04-2016 AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 PANTHER PTHR33449 5 113 7.1E-44 T 19-04-2016 AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 Gene3D G3DSA:3.30.1310.10 5 109 1.2E-40 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 9 95 1.4E-25 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 Pfam PF02575 YbaB/EbfC DNA-binding family 14 103 2.2E-35 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 SUPERFAMILY SSF82607 10 102 6.28E-30 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8912 d9123eb3589bd800801cdd76b19a7e5f 119 PIRSF PIRSF004555 6 115 4.5E-36 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_7369 810519d8ae605f818e0f21b01a35a278 409 PIRSF PIRSF016578 18 406 1.7E-91 T 19-04-2016 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 109 1.3E-5 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 256 389 3.0E-16 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_7369 810519d8ae605f818e0f21b01a35a278 409 Gene3D G3DSA:2.40.110.10 144 221 1.8E-25 T 19-04-2016 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 Gene3D G3DSA:1.10.540.10 17 134 4.5E-28 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 PANTHER PTHR10909:SF316 51 402 3.9E-33 T 19-04-2016 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 PANTHER PTHR10909:SF316 17 25 3.9E-33 T 19-04-2016 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 Gene3D G3DSA:1.20.140.10 222 403 1.3E-31 T 19-04-2016 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 SUPERFAMILY SSF56645 24 228 1.22E-33 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 SUPERFAMILY SSF47203 257 403 3.62E-8 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 PANTHER PTHR10909 51 402 3.9E-33 T 19-04-2016 AMED_7369 810519d8ae605f818e0f21b01a35a278 409 PANTHER PTHR10909 17 25 3.9E-33 T 19-04-2016 AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 Pfam PF07690 Major Facilitator Superfamily 31 375 2.6E-42 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 PANTHER PTHR23508:SF18 7 414 1.9E-174 T 19-04-2016 AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 SUPERFAMILY SSF103473 10 411 1.23E-73 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 Gene3D G3DSA:1.20.1250.20 230 408 3.5E-20 T 19-04-2016 AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 PANTHER PTHR23508 7 414 1.9E-174 T 19-04-2016 AMED_8382 eeabcf74e5451fedd5b7569d907e4ede 414 Gene3D G3DSA:1.20.1250.20 21 210 4.7E-33 T 19-04-2016 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 190 208 3.5E-44 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 256 275 3.5E-44 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 40 59 3.5E-44 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 77 92 3.5E-44 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 277 298 3.5E-44 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PRINTS PR00740 Glycosyl hydrolase family 27 signature 160 177 3.5E-44 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 Pfam PF16499 Alpha galactosidase A 45 361 1.8E-78 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 Gene3D G3DSA:3.20.20.70 37 314 9.5E-110 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 PANTHER PTHR11452 9 404 4.9E-156 T 19-04-2016 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 SUPERFAMILY SSF51011 315 403 1.04E-17 T 19-04-2016 AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 Gene3D G3DSA:2.60.40.1180 315 404 5.4E-23 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_1747 cd3da09fdfeb997ecd65020bc7bdd582 405 SUPERFAMILY SSF51445 36 321 2.59E-84 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 PANTHER PTHR30135 1 323 1.1E-116 T 19-04-2016 AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 Pfam PF01933 Uncharacterised protein family UPF0052 3 291 5.0E-65 T 19-04-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 Gene3D G3DSA:3.40.50.10680 96 325 5.6E-80 T 19-04-2016 AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 Hamap MF_01257 2-phospho-L-lactate transferase [cofD]. 1 329 135.002 T 19-04-2016 IPR010115 2-phospho-L-lactate transferase GO:0000287|GO:0016780|GO:0051188 KEGG: 00680+2.7.8.28|MetaCyc: PWY-5198|UniPathway: UPA00071 AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 SUPERFAMILY SSF142338 3 324 2.35E-80 T 19-04-2016 AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 TIGRFAM TIGR01819 F420_cofD: 2-phospho-L-lactate transferase 3 321 2.9E-119 T 19-04-2016 IPR010115 2-phospho-L-lactate transferase GO:0000287|GO:0016780|GO:0051188 KEGG: 00680+2.7.8.28|MetaCyc: PWY-5198|UniPathway: UPA00071 AMED_1023 3c1386595ffcb0034792195ed9bc4954 329 PANTHER PTHR30135:SF2 1 323 1.1E-116 T 19-04-2016 AMED_8245 b97dae24ee9df7cd0ac790278c6b9f90 135 Pfam PF04266 ASCH domain 13 105 7.6E-15 T 19-04-2016 IPR007374 ASCH domain AMED_8245 b97dae24ee9df7cd0ac790278c6b9f90 135 PIRSF PIRSF021320 2 134 4.4E-39 T 19-04-2016 IPR009326 Protein of unknown function DUF984 AMED_8245 b97dae24ee9df7cd0ac790278c6b9f90 135 SMART SM01022 6 132 6.5E-27 T 19-04-2016 IPR007374 ASCH domain AMED_8245 b97dae24ee9df7cd0ac790278c6b9f90 135 PANTHER PTHR39203 4 135 1.7E-33 T 19-04-2016 AMED_8245 b97dae24ee9df7cd0ac790278c6b9f90 135 SUPERFAMILY SSF88697 6 132 1.74E-30 T 19-04-2016 IPR015947 PUA-like domain AMED_8245 b97dae24ee9df7cd0ac790278c6b9f90 135 Gene3D G3DSA:3.10.400.10 4 133 3.5E-42 T 19-04-2016 AMED_8398 dc2178984f82a2ee9f2f9e772f2307f0 245 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_8398 dc2178984f82a2ee9f2f9e772f2307f0 245 PANTHER PTHR11941 3 221 1.7E-65 T 19-04-2016 AMED_8398 dc2178984f82a2ee9f2f9e772f2307f0 245 Gene3D G3DSA:3.90.226.10 3 228 1.3E-70 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8398 dc2178984f82a2ee9f2f9e772f2307f0 245 SUPERFAMILY SSF52096 2 241 3.08E-68 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8398 dc2178984f82a2ee9f2f9e772f2307f0 245 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 231 2.4E-51 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 PANTHER PTHR22769 4 202 6.4E-69 T 19-04-2016 AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 PRINTS PR00502 NUDIX hydrolase family signature 38 52 7.5E-5 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 PRINTS PR00502 NUDIX hydrolase family signature 52 67 7.5E-5 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 Pfam PF00293 NUDIX domain 11 135 1.8E-19 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 Gene3D G3DSA:1.10.10.10 142 214 5.2E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 SUPERFAMILY SSF46785 149 220 8.16E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 Gene3D G3DSA:3.90.79.10 4 138 9.1E-48 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 PANTHER PTHR22769:SF42 4 202 6.4E-69 T 19-04-2016 AMED_4594 6cd4b19a082539df52f8eecfbbcb3c6a 225 SUPERFAMILY SSF55811 4 146 1.62E-30 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 136 33.709 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 SUPERFAMILY SSF54919 2 135 3.14E-53 T 19-04-2016 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 Gene3D G3DSA:3.30.70.141 2 135 1.1E-55 T 19-04-2016 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 1.1E-41 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 1.1E-41 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.1E-41 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.1E-41 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 1.1E-41 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 19-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 PANTHER PTHR11349 3 135 5.8E-68 T 19-04-2016 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 SMART SM00562 2 136 5.7E-74 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6714 ea167370a61986b1d5cde2f2ad9eadb5 136 Pfam PF00334 Nucleoside diphosphate kinase 3 135 5.8E-52 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_6710 66f6a091bd8abe6739b21cee87a720fc 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 188 207 1.1E-7 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6710 66f6a091bd8abe6739b21cee87a720fc 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 208 227 1.1E-7 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6710 66f6a091bd8abe6739b21cee87a720fc 267 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 1.1E-7 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6710 66f6a091bd8abe6739b21cee87a720fc 267 PANTHER PTHR30413 26 265 2.9E-18 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6710 66f6a091bd8abe6739b21cee87a720fc 267 PIRSF PIRSF006648 2 266 2.0E-24 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6710 66f6a091bd8abe6739b21cee87a720fc 267 Pfam PF01061 ABC-2 type transporter 24 229 2.9E-18 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_4684 3753dee78157738679dd54b6937149de 169 PANTHER PTHR35525 23 166 1.3E-20 T 19-04-2016 AMED_4684 3753dee78157738679dd54b6937149de 169 PANTHER PTHR35525:SF1 23 166 1.3E-20 T 19-04-2016 AMED_4684 3753dee78157738679dd54b6937149de 169 Pfam PF11706 CGNR zinc finger 124 166 1.8E-15 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_4684 3753dee78157738679dd54b6937149de 169 SUPERFAMILY SSF160904 2 165 6.41E-34 T 19-04-2016 AMED_4684 3753dee78157738679dd54b6937149de 169 Gene3D G3DSA:1.10.3300.10 22 166 8.4E-35 T 19-04-2016 IPR023286 ABATE domain AMED_7849 05dcdcec0ea3dbdfba5da754211751c2 167 PANTHER PTHR23091 2 134 3.0E-13 T 19-04-2016 AMED_7849 05dcdcec0ea3dbdfba5da754211751c2 167 PANTHER PTHR23091:SF225 2 134 3.0E-13 T 19-04-2016 AMED_7849 05dcdcec0ea3dbdfba5da754211751c2 167 Pfam PF00583 Acetyltransferase (GNAT) family 57 132 1.0E-11 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7849 05dcdcec0ea3dbdfba5da754211751c2 167 SUPERFAMILY SSF55729 2 140 2.7E-24 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7849 05dcdcec0ea3dbdfba5da754211751c2 167 Gene3D G3DSA:3.40.630.30 2 167 5.3E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 SMART SM00421 148 211 1.7E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 Gene3D G3DSA:1.10.10.10 149 213 8.9E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 PANTHER PTHR26402 1 211 3.3E-77 T 19-04-2016 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 SUPERFAMILY SSF52172 1 132 3.13E-17 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 SMART SM00448 1 120 1.6E-9 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 195 2.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 SUPERFAMILY SSF46894 132 195 1.5E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 PANTHER PTHR26402:SF582 1 211 3.3E-77 T 19-04-2016 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 Gene3D G3DSA:3.40.50.2300 1 148 7.7E-23 T 19-04-2016 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 1.1E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 1.1E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 1.1E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2084 d92909c398c3c5df8b842e81856a0ca0 214 Pfam PF00072 Response regulator receiver domain 3 108 8.9E-15 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 PANTHER PTHR10992:SF863 352 465 5.4E-54 T 19-04-2016 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 PANTHER PTHR10992:SF863 171 260 5.4E-54 T 19-04-2016 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 PANTHER PTHR10992:SF863 7 128 5.4E-54 T 19-04-2016 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 PANTHER PTHR10992 352 465 5.4E-54 T 19-04-2016 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 PANTHER PTHR10992 171 260 5.4E-54 T 19-04-2016 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 PANTHER PTHR10992 7 128 5.4E-54 T 19-04-2016 AMED_7656 6313e968495a0af6c99d294cc580a38f 495 Gene3D G3DSA:3.40.50.1820 342 463 2.3E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7656 6313e968495a0af6c99d294cc580a38f 495 Gene3D G3DSA:3.40.50.1820 170 292 2.3E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7656 6313e968495a0af6c99d294cc580a38f 495 Gene3D G3DSA:3.40.50.1820 45 129 2.3E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7656 6313e968495a0af6c99d294cc580a38f 495 SUPERFAMILY SSF53474 321 453 7.16E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7656 6313e968495a0af6c99d294cc580a38f 495 SUPERFAMILY SSF53474 160 225 7.16E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7656 6313e968495a0af6c99d294cc580a38f 495 SUPERFAMILY SSF53474 70 124 7.16E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7656 6313e968495a0af6c99d294cc580a38f 495 Pfam PF00561 alpha/beta hydrolase fold 81 451 1.1E-30 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 SUPERFAMILY SSF52016 385 562 1.18E-56 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 Pfam PF00920 Dehydratase family 37 560 1.8E-211 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 PANTHER PTHR21000 8 562 0.0 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 7 563 45.671 T 19-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 471 482 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 21 562 4.8E-218 T 19-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 SUPERFAMILY SSF143975 5 384 1.31E-133 T 19-04-2016 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 125 135 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_7502 0edf786257f15f2f6a8f14315d983d0c 563 PANTHER PTHR21000:SF5 8 562 0.0 T 19-04-2016 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 422 1.7E-130 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 PANTHER PTHR11808 266 427 9.0E-223 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 PANTHER PTHR11808 1 236 9.0E-223 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 Gene3D G3DSA:3.90.1150.10 289 425 1.8E-49 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 PANTHER PTHR11808:SF12 266 427 9.0E-223 T 19-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 PANTHER PTHR11808:SF12 1 236 9.0E-223 T 19-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 PIRSF PIRSF001434 1 426 2.7E-125 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 SUPERFAMILY SSF53383 6 422 7.58E-124 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 8 422 6.8E-179 T 19-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 AMED_1934 df76d9e18ce1e194b336f7393fb220c3 428 Gene3D G3DSA:3.40.640.10 7 287 2.0E-114 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4635 a3441a365ae4e0d28c7d1a4b503b7f91 345 SUPERFAMILY SSF51679 3 329 5.36E-73 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4635 a3441a365ae4e0d28c7d1a4b503b7f91 345 Pfam PF00296 Luciferase-like monooxygenase 18 317 5.2E-84 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4635 a3441a365ae4e0d28c7d1a4b503b7f91 345 TIGRFAM TIGR03559 F420_Rv3520c: probable F420-dependent oxidoreductase, Rv3520c family 2 321 8.9E-116 T 19-04-2016 IPR019951 F420-dependent oxidoreductase-predicted, Rv3520c KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_4635 a3441a365ae4e0d28c7d1a4b503b7f91 345 PANTHER PTHR30011 15 323 4.4E-130 T 19-04-2016 AMED_4635 a3441a365ae4e0d28c7d1a4b503b7f91 345 Gene3D G3DSA:3.20.20.30 2 333 5.6E-81 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4635 a3441a365ae4e0d28c7d1a4b503b7f91 345 PANTHER PTHR30011:SF4 15 323 4.4E-130 T 19-04-2016 AMED_4885 07e9ceca85d2453d54815e0e10b05c5d 327 Pfam PF13280 WYL domain 148 319 8.9E-26 T 19-04-2016 IPR026881 WYL domain AMED_4885 07e9ceca85d2453d54815e0e10b05c5d 327 PANTHER PTHR34580:SF3 1 326 3.4E-40 T 19-04-2016 AMED_4885 07e9ceca85d2453d54815e0e10b05c5d 327 PANTHER PTHR34580 1 326 3.4E-40 T 19-04-2016 AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 SUPERFAMILY SSF53850 97 304 7.97E-31 T 19-04-2016 AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 PANTHER PTHR30346:SF2 8 305 1.2E-77 T 19-04-2016 AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 Pfam PF03466 LysR substrate binding domain 96 303 2.7E-32 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 PANTHER PTHR30346 8 305 1.2E-77 T 19-04-2016 AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 SUPERFAMILY SSF46785 12 118 3.37E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 Gene3D G3DSA:3.40.190.10 96 193 6.6E-26 T 19-04-2016 AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 Gene3D G3DSA:1.10.10.10 11 92 2.6E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 1.6E-17 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_1937 2d9082d26c1664f0ba8748efa7c5cc97 305 Gene3D G3DSA:3.40.190.10 194 273 6.4E-16 T 19-04-2016 AMED_7204 8772d68a160b1095d6893168066a33dc 379 SUPERFAMILY SSF89796 4 144 4.19E-6 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7204 8772d68a160b1095d6893168066a33dc 379 Gene3D G3DSA:3.40.50.10540 153 338 2.3E-37 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7204 8772d68a160b1095d6893168066a33dc 379 Pfam PF02515 CoA-transferase family III 153 364 5.3E-35 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7204 8772d68a160b1095d6893168066a33dc 379 SUPERFAMILY SSF89796 151 363 2.09E-36 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2438 418fa295692c9ca82033cc517f28088b 325 Pfam PF13668 Ferritin-like domain 71 239 1.6E-44 T 19-04-2016 AMED_2438 418fa295692c9ca82033cc517f28088b 325 PANTHER PTHR31694 71 318 1.5E-54 T 19-04-2016 AMED_2438 418fa295692c9ca82033cc517f28088b 325 Gene3D G3DSA:1.20.1260.10 119 237 1.1E-6 T 19-04-2016 IPR012347 Ferritin-related AMED_2438 418fa295692c9ca82033cc517f28088b 325 SUPERFAMILY SSF47240 117 236 1.53E-8 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 Gene3D G3DSA:3.40.50.720 2 230 4.5E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 SUPERFAMILY SSF51735 2 230 3.45E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 180 8.5E-8 T 19-04-2016 AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 230 1.2E-57 T 19-04-2016 AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PANTHER PTHR24322 7 124 1.0E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PANTHER PTHR24322 140 172 1.0E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 9.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 9.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 9.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4941 1452cc3e6561cb4f922fc4bb106b00c4 234 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 PANTHER PTHR11895:SF35 1 386 3.7E-156 T 19-04-2016 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 PANTHER PTHR11895:SF35 417 484 3.7E-156 T 19-04-2016 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 Pfam PF01425 Amidase 26 467 2.4E-85 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 SUPERFAMILY SSF75304 418 485 5.23E-122 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 SUPERFAMILY SSF75304 3 389 5.23E-122 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 PANTHER PTHR11895 1 386 3.7E-156 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 PANTHER PTHR11895 417 484 3.7E-156 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 ProSitePatterns PS00571 Amidases signature. 141 172 - T 19-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 Gene3D G3DSA:3.90.1300.10 420 483 2.7E-117 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_4225 b326d64a180f9004232d7b07c25a2ca6 487 Gene3D G3DSA:3.90.1300.10 3 386 2.7E-117 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 PANTHER PTHR11070:SF25 456 734 7.1E-136 T 19-04-2016 AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 SUPERFAMILY SSF52540 512 739 2.5E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 SUPERFAMILY SSF52540 345 387 2.5E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 SUPERFAMILY SSF52540 183 261 2.5E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 PANTHER PTHR11070:SF25 85 350 7.1E-136 T 19-04-2016 AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 Pfam PF13538 UvrD-like helicase C-terminal domain 687 733 2.4E-10 T 19-04-2016 IPR027785 UvrD-like helicase C-terminal domain AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 Gene3D G3DSA:3.40.50.300 596 741 4.2E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 PANTHER PTHR11070 456 734 7.1E-136 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 Pfam PF13245 Part of AAA domain 196 261 1.2E-16 T 19-04-2016 AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 Gene3D G3DSA:3.40.50.300 189 257 3.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 Gene3D G3DSA:3.40.50.300 483 591 3.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2816 cdbecb63dbf0a2fdde397a09829025ba 747 PANTHER PTHR11070 85 350 7.1E-136 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_8467 45f226feb01348e3351a6c912f80138a 220 PANTHER PTHR26402:SF553 1 217 1.4E-88 T 19-04-2016 AMED_8467 45f226feb01348e3351a6c912f80138a 220 PANTHER PTHR26402 1 217 1.4E-88 T 19-04-2016 AMED_8467 45f226feb01348e3351a6c912f80138a 220 Pfam PF00072 Response regulator receiver domain 3 113 2.1E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8467 45f226feb01348e3351a6c912f80138a 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 217 2.7E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8467 45f226feb01348e3351a6c912f80138a 220 SMART SM00862 145 217 1.9E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8467 45f226feb01348e3351a6c912f80138a 220 SUPERFAMILY SSF52172 2 171 8.45E-34 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8467 45f226feb01348e3351a6c912f80138a 220 Gene3D G3DSA:3.40.50.2300 2 120 2.3E-32 T 19-04-2016 AMED_8467 45f226feb01348e3351a6c912f80138a 220 Gene3D G3DSA:1.10.10.10 124 218 6.0E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8467 45f226feb01348e3351a6c912f80138a 220 SMART SM00448 1 112 7.4E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 348 357 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PANTHER PTHR11712 1 406 9.1E-92 T 19-04-2016 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00385 P450 superfamily signature 244 261 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00385 P450 superfamily signature 279 290 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00385 P450 superfamily signature 346 355 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00385 P450 superfamily signature 355 366 1.2E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 Gene3D G3DSA:1.10.630.10 11 406 1.6E-121 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 Pfam PF00067 Cytochrome P450 185 266 1.9E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 Pfam PF00067 Cytochrome P450 280 375 2.0E-19 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 SUPERFAMILY SSF48264 13 406 9.3E-93 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 96 107 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 346 355 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 143 159 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 297 324 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 279 290 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 160 175 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 197 219 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 325 340 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0876 7b4e6a6a8f5710cc1f30a280508479a3 406 PRINTS PR00359 B-class P450 signature 355 366 3.5E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 SUPERFAMILY SSF54909 65 135 6.44E-11 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 Gene3D G3DSA:1.10.10.10 5 46 7.5E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 187 198 4.1E-5 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 198 217 4.1E-5 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 171 187 4.1E-5 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 SUPERFAMILY SSF54909 231 309 1.61E-5 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 PANTHER PTHR30154:SF12 163 282 3.9E-16 T 19-04-2016 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 Pfam PF01037 Lrp/AsnC ligand binding domain 67 134 2.3E-8 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 SMART SM00344 171 276 3.3E-8 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 PANTHER PTHR30154 163 282 3.9E-16 T 19-04-2016 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 Gene3D G3DSA:3.30.70.920 235 282 4.0E-5 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 Gene3D G3DSA:3.30.70.920 65 134 8.5E-12 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 Pfam PF13404 AsnC-type helix-turn-helix domain 172 210 1.4E-8 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 Gene3D G3DSA:1.10.10.10 170 218 3.8E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2545 f8b2b1acfbe070417055ed640a94e92a 348 SUPERFAMILY SSF46785 167 221 7.05E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 453 9.7E-18 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 SMART SM00388 232 298 4.7E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 SMART SM00387 343 454 8.7E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 Pfam PF00672 HAMP domain 160 227 4.7E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 PANTHER PTHR24423 172 453 4.0E-64 T 19-04-2016 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 1.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 SUPERFAMILY SSF55874 288 453 2.1E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 Gene3D G3DSA:3.30.565.10 310 453 5.8E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 Gene3D G3DSA:1.10.287.130 225 293 8.9E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 SMART SM00304 178 231 4.2E-5 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 SUPERFAMILY SSF47384 215 293 6.67E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_5077 92907eac402aed120feef8b3c3f92c9f 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 296 3.9E-13 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2132 f05518046b353ab929b0c7ecbe299caa 480 SUPERFAMILY SSF47413 8 62 1.18E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2132 f05518046b353ab929b0c7ecbe299caa 480 SMART SM00530 7 62 1.3E-4 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2132 f05518046b353ab929b0c7ecbe299caa 480 Gene3D G3DSA:1.10.260.40 8 62 2.0E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2132 f05518046b353ab929b0c7ecbe299caa 480 SUPERFAMILY SSF48452 248 406 7.59E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2132 f05518046b353ab929b0c7ecbe299caa 480 Pfam PF01381 Helix-turn-helix 10 62 1.4E-5 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2132 f05518046b353ab929b0c7ecbe299caa 480 Gene3D G3DSA:1.25.40.10 249 450 3.0E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 SMART SM00304 199 261 3.3E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 3.0E-11 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 430 3.0E-11 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 444 3.0E-11 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 PANTHER PTHR24423 135 169 5.3E-75 T 19-04-2016 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 PANTHER PTHR24423 241 492 5.3E-75 T 19-04-2016 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 Pfam PF00512 His Kinase A (phospho-acceptor) domain 271 336 5.0E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 487 4.6E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 Pfam PF00672 HAMP domain 180 256 6.9E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 SMART SM00388 269 336 1.2E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 SUPERFAMILY SSF47384 253 337 1.12E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 SMART SM00387 379 490 1.8E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 Gene3D G3DSA:3.30.565.10 323 488 1.2E-41 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 Gene3D G3DSA:1.10.287.130 261 322 1.7E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8929 f9b7e9df05071dfa67291f592fa7b9c9 492 SUPERFAMILY SSF55874 325 486 7.2E-39 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0295 c558c9ba6ff58ef86385e40361d5f6d5 408 Gene3D G3DSA:1.20.1250.20 5 198 1.3E-13 T 19-04-2016 AMED_0295 c558c9ba6ff58ef86385e40361d5f6d5 408 Gene3D G3DSA:1.20.1250.20 213 395 6.8E-13 T 19-04-2016 AMED_0295 c558c9ba6ff58ef86385e40361d5f6d5 408 PANTHER PTHR23513 3 402 3.6E-62 T 19-04-2016 AMED_0295 c558c9ba6ff58ef86385e40361d5f6d5 408 Pfam PF05977 Transmembrane secretion effector 4 401 5.6E-42 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_0295 c558c9ba6ff58ef86385e40361d5f6d5 408 SUPERFAMILY SSF103473 5 398 8.37E-40 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5501 54155d3d155df9052253cecb53889506 402 PANTHER PTHR11926 1 382 5.3E-29 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_5501 54155d3d155df9052253cecb53889506 402 SUPERFAMILY SSF53756 2 398 3.14E-83 T 19-04-2016 AMED_5501 54155d3d155df9052253cecb53889506 402 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 125 7.6E-7 T 19-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_5501 54155d3d155df9052253cecb53889506 402 Gene3D G3DSA:3.40.50.2000 237 382 5.4E-50 T 19-04-2016 AMED_5501 54155d3d155df9052253cecb53889506 402 Gene3D G3DSA:3.40.50.2000 2 236 5.1E-52 T 19-04-2016 AMED_5501 54155d3d155df9052253cecb53889506 402 PANTHER PTHR11926:SF394 1 382 5.3E-29 T 19-04-2016 AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 480 168.24 T 19-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 Gene3D G3DSA:3.40.50.300 1 236 1.4E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 224 1.0E-25 T 19-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 PANTHER PTHR21343:SF1 1 477 1.4E-186 T 19-04-2016 AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 Gene3D G3DSA:3.40.50.880 253 428 3.8E-38 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 423 6.4E-39 T 19-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 4 472 3.0E-131 T 19-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 PANTHER PTHR21343 1 477 1.4E-186 T 19-04-2016 AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 SUPERFAMILY SSF52540 1 238 1.11E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7044 22074313eb08bd2a1ebc415c860d8a90 493 SUPERFAMILY SSF52317 251 417 5.02E-35 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7717 85d13f80d2d04d71ab16c295dcec696d 99 PANTHER PTHR33473 11 97 5.3E-30 T 19-04-2016 AMED_7717 85d13f80d2d04d71ab16c295dcec696d 99 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 6 99 18.374 T 19-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AMED_7717 85d13f80d2d04d71ab16c295dcec696d 99 Gene3D G3DSA:3.30.1390.10 6 97 3.7E-31 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMED_7717 85d13f80d2d04d71ab16c295dcec696d 99 SUPERFAMILY SSF54736 21 96 1.26E-24 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMED_7717 85d13f80d2d04d71ab16c295dcec696d 99 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 93 1.6E-22 T 19-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 AMED_5374 6c447acca849c1808416a79d5425d614 253 PANTHER PTHR24322 157 189 7.6E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PANTHER PTHR24322 17 141 7.6E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 Pfam PF00106 short chain dehydrogenase 14 200 8.2E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.7E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.7E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.7E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.7E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.7E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.7E-29 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 Gene3D G3DSA:3.40.50.720 4 252 1.8E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5374 6c447acca849c1808416a79d5425d614 253 SUPERFAMILY SSF51735 8 252 1.52E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5374 6c447acca849c1808416a79d5425d614 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.0E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.0E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5374 6c447acca849c1808416a79d5425d614 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.0E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 SUPERFAMILY SSF52283 11 174 9.35E-49 T 19-04-2016 AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 SUPERFAMILY SSF51735 144 318 1.88E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 PANTHER PTHR10160 8 362 4.5E-164 T 19-04-2016 AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 Gene3D G3DSA:3.40.50.720 175 204 1.3E-7 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 Gene3D G3DSA:3.40.50.1770 11 174 5.0E-59 T 19-04-2016 AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 13 142 1.4E-40 T 19-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 SMART SM01002 152 314 2.2E-78 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 SMART SM01003 13 143 2.2E-61 T 19-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 147 363 8.3E-68 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_2090 37283d107b8ab35333c7a7f24ffb19b3 370 Gene3D G3DSA:3.40.50.1770 205 365 2.2E-36 T 19-04-2016 AMED_4117 a0a2ab5f3c8e837c5d6b79d41957b87e 313 Gene3D G3DSA:1.10.620.20 4 301 2.2E-106 T 19-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 AMED_4117 a0a2ab5f3c8e837c5d6b79d41957b87e 313 PANTHER PTHR31155 8 313 3.4E-133 T 19-04-2016 AMED_4117 a0a2ab5f3c8e837c5d6b79d41957b87e 313 Pfam PF03405 Fatty acid desaturase 7 304 3.7E-75 T 19-04-2016 IPR005067 Fatty acid desaturase, type 2 GO:0006631|GO:0045300|GO:0055114 UniPathway: UPA00199 AMED_4117 a0a2ab5f3c8e837c5d6b79d41957b87e 313 PIRSF PIRSF000346 1 311 3.5E-99 T 19-04-2016 IPR005067 Fatty acid desaturase, type 2 GO:0006631|GO:0045300|GO:0055114 UniPathway: UPA00199 AMED_4117 a0a2ab5f3c8e837c5d6b79d41957b87e 313 PANTHER PTHR31155:SF5 8 313 3.4E-133 T 19-04-2016 AMED_4117 a0a2ab5f3c8e837c5d6b79d41957b87e 313 SUPERFAMILY SSF47240 4 305 1.12E-82 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_3668 b4a6203a60b2a89ec718f09595931806 169 Pfam PF12680 SnoaL-like domain 42 143 1.5E-12 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3668 b4a6203a60b2a89ec718f09595931806 169 SUPERFAMILY SSF54427 41 161 3.59E-18 T 19-04-2016 IPR032710 NTF2-like domain AMED_3668 b4a6203a60b2a89ec718f09595931806 169 Gene3D G3DSA:3.10.450.50 41 160 6.2E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_5819 69d59e8cd7138e0d4cbe8e5008f71a58 182 SUPERFAMILY SSF53098 5 151 2.12E-17 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5819 69d59e8cd7138e0d4cbe8e5008f71a58 182 Pfam PF13683 Integrase core domain 86 151 4.5E-13 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_5819 69d59e8cd7138e0d4cbe8e5008f71a58 182 Gene3D G3DSA:3.30.420.10 4 151 2.3E-15 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_2967 cff7d70a66ef35f1169e9e71a7ee533f 492 Gene3D G3DSA:3.30.70.1450 406 466 2.0E-6 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2967 cff7d70a66ef35f1169e9e71a7ee533f 492 PANTHER PTHR32507:SF7 1 492 6.3E-157 T 19-04-2016 IPR030151 K(+)/H(+) antiporter NhaP GO:0005451|GO:0006813|GO:0016021 AMED_2967 cff7d70a66ef35f1169e9e71a7ee533f 492 Pfam PF02080 TrkA-C domain 408 471 1.5E-8 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2967 cff7d70a66ef35f1169e9e71a7ee533f 492 SUPERFAMILY SSF116726 400 470 1.23E-9 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2967 cff7d70a66ef35f1169e9e71a7ee533f 492 PANTHER PTHR32507 1 492 6.3E-157 T 19-04-2016 AMED_2967 cff7d70a66ef35f1169e9e71a7ee533f 492 Pfam PF00999 Sodium/hydrogen exchanger family 14 380 1.8E-48 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_5037 f8b866c48872782a8bc089f898881374 267 SMART SM00382 29 218 4.6E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5037 f8b866c48872782a8bc089f898881374 267 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5037 f8b866c48872782a8bc089f898881374 267 Gene3D G3DSA:3.40.50.300 2 236 2.1E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5037 f8b866c48872782a8bc089f898881374 267 Pfam PF00005 ABC transporter 21 168 1.2E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5037 f8b866c48872782a8bc089f898881374 267 PANTHER PTHR24220 6 260 5.8E-146 T 19-04-2016 AMED_5037 f8b866c48872782a8bc089f898881374 267 SUPERFAMILY SSF52540 3 230 1.04E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5037 f8b866c48872782a8bc089f898881374 267 PANTHER PTHR24220:SF438 6 260 5.8E-146 T 19-04-2016 AMED_2200 bacbb51294e01606737e92af4190d132 185 Gene3D G3DSA:1.20.120.80 3 184 2.0E-52 T 19-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 AMED_2200 bacbb51294e01606737e92af4190d132 185 SUPERFAMILY SSF81452 3 184 1.07E-52 T 19-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 AMED_2200 bacbb51294e01606737e92af4190d132 185 Pfam PF00510 Cytochrome c oxidase subunit III 3 183 2.4E-24 T 19-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 AMED_2200 bacbb51294e01606737e92af4190d132 185 PANTHER PTHR11403 4 184 4.9E-64 T 19-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF47336 1320 1392 3.01E-19 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SMART SM00823 Phosphopantetheine attachment site 1326 1395 1.6E-5 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1350 1365 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00501 AMP-binding enzyme 501 591 1.4E-13 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00501 AMP-binding enzyme 699 790 4.0E-8 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00668 Condensation domain 39 338 6.3E-70 T 19-04-2016 IPR001242 Condensation domain AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 PANTHER PTHR24095:SF137 40 847 7.7E-136 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 PANTHER PTHR24095:SF137 1251 1414 7.7E-136 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 PANTHER PTHR24095:SF137 880 894 7.7E-136 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF00550 Phosphopantetheine attachment site 1328 1391 1.7E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF53335 922 1036 3.31E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.30.300.30 1265 1330 2.7E-9 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.30.300.30 823 870 2.7E-9 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.40.50.150 924 1059 3.3E-14 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 PANTHER PTHR24095 40 847 7.7E-136 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 PANTHER PTHR24095 1251 1414 7.7E-136 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 PANTHER PTHR24095 880 894 7.7E-136 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.40.50.980 700 746 3.1E-5 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF56801 1260 1339 1.01E-46 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF56801 499 873 1.01E-46 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF52777 227 473 1.33E-56 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF13649 Methyltransferase domain 929 1027 1.7E-6 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Pfam PF13745 HxxPF-repeated domain 360 452 5.5E-21 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:1.10.1200.10 1331 1396 4.4E-26 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 SUPERFAMILY SSF52777 42 220 1.45E-48 T 19-04-2016 AMED_6231 4324b28bc7bc1c814ef01e9bc0d59b57 1437 Gene3D G3DSA:3.40.50.980 499 596 1.0E-15 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 PANTHER PTHR22845:SF4 215 553 1.2E-58 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 Pfam PF00931 NB-ARC domain 242 476 1.1E-7 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 Pfam PF13424 Tetratricopeptide repeat 812 881 1.4E-10 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 PANTHER PTHR22845 215 553 1.2E-58 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SUPERFAMILY SSF48452 623 763 2.84E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 PRINTS PR00364 Disease resistance protein signature 321 335 4.0E-8 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 PRINTS PR00364 Disease resistance protein signature 404 418 4.0E-8 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 PRINTS PR00364 Disease resistance protein signature 242 257 4.0E-8 T 19-04-2016 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 Gene3D G3DSA:1.25.40.10 751 963 6.2E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 Gene3D G3DSA:1.25.40.10 624 750 6.5E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SUPERFAMILY SSF48452 759 962 4.55E-22 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SMART SM00028 930 963 69.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SMART SM00028 652 685 110.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SMART SM00028 772 805 31.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SMART SM00028 692 725 13.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SMART SM00028 852 885 1.7 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SMART SM00028 812 845 0.041 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SUPERFAMILY SSF55073 44 122 7.38E-6 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_1702 06cbac20d4d5de37a80918cb3d54f039 982 SUPERFAMILY SSF52540 206 471 3.67E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1704 b71e8ff96425c60863c1dc8481493772 288 SUPERFAMILY SSF53335 20 271 1.83E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1704 b71e8ff96425c60863c1dc8481493772 288 Gene3D G3DSA:3.40.50.150 8 287 1.4E-87 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1704 b71e8ff96425c60863c1dc8481493772 288 Pfam PF04672 S-adenosyl methyltransferase 14 287 4.1E-73 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_1704 b71e8ff96425c60863c1dc8481493772 288 PIRSF PIRSF017393 3 288 5.4E-74 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_6606 6e70c213ca05d27817d124f7a892c90f 215 Pfam PF04203 Sortase family 109 210 3.8E-9 T 19-04-2016 IPR005754 Sortase family AMED_6606 6e70c213ca05d27817d124f7a892c90f 215 Gene3D G3DSA:2.40.260.10 113 209 2.8E-5 T 19-04-2016 IPR023365 Sortase domain AMED_6606 6e70c213ca05d27817d124f7a892c90f 215 SUPERFAMILY SSF63817 65 210 1.1E-10 T 19-04-2016 IPR023365 Sortase domain AMED_5464 1e235e9dc90af8b7c2fbd7f54856ed9c 329 SUPERFAMILY SSF55469 8 88 1.13E-10 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5464 1e235e9dc90af8b7c2fbd7f54856ed9c 329 Gene3D G3DSA:3.40.109.10 8 69 1.3E-25 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5464 1e235e9dc90af8b7c2fbd7f54856ed9c 329 Gene3D G3DSA:3.40.109.10 226 319 1.3E-25 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5464 1e235e9dc90af8b7c2fbd7f54856ed9c 329 SUPERFAMILY SSF55469 236 319 5.0E-7 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5464 1e235e9dc90af8b7c2fbd7f54856ed9c 329 Pfam PF00881 Nitroreductase family 230 285 1.1E-4 T 19-04-2016 IPR029479 Nitroreductase AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 Pfam PF00561 alpha/beta hydrolase fold 88 263 8.0E-24 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 Gene3D G3DSA:3.40.50.1820 53 136 2.2E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 Gene3D G3DSA:3.40.50.1820 178 302 2.2E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 Gene3D G3DSA:3.40.50.1820 354 473 2.2E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 SUPERFAMILY SSF53474 85 138 2.55E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 SUPERFAMILY SSF53474 312 472 2.55E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 SUPERFAMILY SSF53474 180 234 2.55E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 PANTHER PTHR10992:SF878 180 267 2.4E-34 T 19-04-2016 AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 PANTHER PTHR10992:SF878 361 475 2.4E-34 T 19-04-2016 AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 PANTHER PTHR10992:SF878 37 136 2.4E-34 T 19-04-2016 AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 Pfam PF08386 TAP-like protein 387 481 4.4E-19 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 PANTHER PTHR10992 180 267 2.4E-34 T 19-04-2016 AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 PANTHER PTHR10992 37 136 2.4E-34 T 19-04-2016 AMED_6048 0b14d75442ff71b910fc7f3cc994c517 527 PANTHER PTHR10992 361 475 2.4E-34 T 19-04-2016 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 Pfam PF13977 Bacterial transcriptional repressor 109 178 8.9E-8 T 19-04-2016 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 PANTHER PTHR30055 9 179 4.1E-25 T 19-04-2016 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 SUPERFAMILY SSF46689 7 70 1.05E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 Gene3D G3DSA:1.10.357.10 9 190 3.2E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 3.5E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5840 7f4473edfda2dce673a3d4912d5a25c4 195 SUPERFAMILY SSF48498 82 179 8.62E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6522 909428ab69e90d3822bffe2d780f2741 311 PANTHER PTHR11019:SF68 1 311 5.7E-108 T 19-04-2016 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 260 302 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 Gene3D G3DSA:1.10.10.60 207 259 3.3E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 PANTHER PTHR11019 1 311 5.7E-108 T 19-04-2016 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 SUPERFAMILY SSF52317 4 189 2.04E-46 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6522 909428ab69e90d3822bffe2d780f2741 311 Gene3D G3DSA:3.40.50.880 4 188 7.8E-52 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6522 909428ab69e90d3822bffe2d780f2741 311 Pfam PF01965 DJ-1/PfpI family 4 168 1.5E-20 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_6522 909428ab69e90d3822bffe2d780f2741 311 Pfam PF12833 Helix-turn-helix domain 229 307 2.8E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 SUPERFAMILY SSF46689 260 309 1.88E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 SMART SM00342 223 306 2.3E-27 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 SUPERFAMILY SSF46689 209 256 6.65E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6522 909428ab69e90d3822bffe2d780f2741 311 Gene3D G3DSA:1.10.10.60 260 308 1.4E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8340 6351d5b909867f350250befe6a3e1f23 334 Pfam PF00248 Aldo/keto reductase family 19 332 3.1E-51 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_8340 6351d5b909867f350250befe6a3e1f23 334 PANTHER PTHR11732 118 334 7.3E-87 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_8340 6351d5b909867f350250befe6a3e1f23 334 PANTHER PTHR11732 4 98 7.3E-87 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_8340 6351d5b909867f350250befe6a3e1f23 334 Gene3D G3DSA:3.20.20.100 4 333 1.5E-76 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_8340 6351d5b909867f350250befe6a3e1f23 334 SUPERFAMILY SSF51430 4 334 3.14E-75 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0272 b7395cd82f36391c68858426fb94d362 358 SUPERFAMILY SSF53383 19 349 6.66E-80 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0272 b7395cd82f36391c68858426fb94d362 358 Gene3D G3DSA:3.40.640.10 40 239 1.5E-49 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0272 b7395cd82f36391c68858426fb94d362 358 Hamap MF_01513 Putative phenylalanine aminotransferase [pat]. 6 351 47.651 T 19-04-2016 IPR024892 Putative phenylalanine aminotransferase AMED_0272 b7395cd82f36391c68858426fb94d362 358 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 7 348 6.2E-90 T 19-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 AMED_0272 b7395cd82f36391c68858426fb94d362 358 Pfam PF00155 Aminotransferase class I and II 26 342 2.0E-48 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_0272 b7395cd82f36391c68858426fb94d362 358 PANTHER PTHR11751:SF347 4 352 2.1E-96 T 19-04-2016 AMED_0272 b7395cd82f36391c68858426fb94d362 358 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 5 350 50.549 T 19-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 AMED_0272 b7395cd82f36391c68858426fb94d362 358 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 214 223 - T 19-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AMED_0272 b7395cd82f36391c68858426fb94d362 358 Gene3D G3DSA:3.90.1150.10 240 349 1.4E-32 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0272 b7395cd82f36391c68858426fb94d362 358 PANTHER PTHR11751 4 352 2.1E-96 T 19-04-2016 AMED_1734 8a48fcbd69729b3874a84a252d8fdb1b 126 PANTHER PTHR35908:SF1 1 124 9.2E-30 T 19-04-2016 AMED_1734 8a48fcbd69729b3874a84a252d8fdb1b 126 PANTHER PTHR35908 1 124 9.2E-30 T 19-04-2016 AMED_1734 8a48fcbd69729b3874a84a252d8fdb1b 126 Gene3D G3DSA:3.10.180.10 2 117 2.2E-8 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1734 8a48fcbd69729b3874a84a252d8fdb1b 126 SUPERFAMILY SSF54593 8 115 4.93E-9 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 SUPERFAMILY SSF56024 47 259 1.77E-38 T 19-04-2016 AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 Gene3D G3DSA:3.30.870.10 261 428 4.1E-19 T 19-04-2016 AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 Gene3D G3DSA:3.30.870.10 53 260 1.6E-35 T 19-04-2016 AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 SMART SM00155 164 191 1.5 T 19-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 SMART SM00155 364 391 0.25 T 19-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 PANTHER PTHR18896 53 446 7.2E-41 T 19-04-2016 IPR015679 Phospholipase D family KEGG: 00564+3.1.4.4|KEGG: 00565+3.1.4.4|MetaCyc: PWY-3561|MetaCyc: PWY-7039 AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 Pfam PF13091 PLD-like domain 76 188 1.6E-7 T 19-04-2016 IPR025202 Phospholipase D-like domain AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 Pfam PF13091 PLD-like domain 278 409 2.7E-10 T 19-04-2016 IPR025202 Phospholipase D-like domain AMED_4111 c1e21e56b914c4d1f1c1645885804a46 485 SUPERFAMILY SSF56024 226 421 9.87E-25 T 19-04-2016 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 Gene3D G3DSA:1.10.10.10 117 196 1.1E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 118 195 3.9E-30 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 PANTHER PTHR10815:SF5 6 195 1.1E-48 T 19-04-2016 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 166 172 - T 19-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 Gene3D G3DSA:3.30.160.70 33 113 3.4E-10 T 19-04-2016 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 118 196 8.8E-27 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 36 112 9.3E-12 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 SUPERFAMILY SSF53155 35 112 2.94E-18 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 PANTHER PTHR10815 6 195 1.1E-48 T 19-04-2016 AMED_4231 92d0d0ff074486a1e76c6c58cc85ca73 197 SUPERFAMILY SSF46767 117 195 4.32E-26 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_1992 9178469ad79e11fbc3a7a027c2ac81bf 263 PANTHER PTHR35005 1 263 7.4E-45 T 19-04-2016 AMED_1992 9178469ad79e11fbc3a7a027c2ac81bf 263 PANTHER PTHR35005:SF1 1 263 7.4E-45 T 19-04-2016 AMED_1992 9178469ad79e11fbc3a7a027c2ac81bf 263 Gene3D G3DSA:3.40.50.10310 3 252 2.4E-63 T 19-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_1992 9178469ad79e11fbc3a7a027c2ac81bf 263 Pfam PF02633 Creatinine amidohydrolase 8 246 2.6E-57 T 19-04-2016 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_1992 9178469ad79e11fbc3a7a027c2ac81bf 263 SUPERFAMILY SSF102215 3 253 4.32E-59 T 19-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_6758 6154806fd4c80a4143f44cd90d6d9709 418 Pfam PF00535 Glycosyl transferase family 2 25 192 6.9E-24 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_6758 6154806fd4c80a4143f44cd90d6d9709 418 Gene3D G3DSA:3.90.550.10 24 226 9.1E-21 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_6758 6154806fd4c80a4143f44cd90d6d9709 418 SUPERFAMILY SSF53448 20 234 7.78E-37 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_6758 6154806fd4c80a4143f44cd90d6d9709 418 Pfam PF04138 GtrA-like protein 289 406 3.6E-9 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_6758 6154806fd4c80a4143f44cd90d6d9709 418 PANTHER PTHR10859 3 249 4.0E-54 T 19-04-2016 AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 PANTHER PTHR11751 10 107 9.0E-25 T 19-04-2016 AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 SUPERFAMILY SSF48008 89 218 4.18E-26 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 69 1.9E-19 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 SMART SM00895 90 214 1.5E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 Pfam PF07729 FCD domain 91 212 9.4E-26 T 19-04-2016 IPR011711 GntR, C-terminal AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 SMART SM00345 10 69 1.9E-21 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 SUPERFAMILY SSF46785 6 73 4.69E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 Gene3D G3DSA:1.20.120.530 88 217 6.6E-27 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 6.4E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 6.4E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0269 93c7e24fe01f110b38f5bf929a5b307f 229 Gene3D G3DSA:1.10.10.10 7 75 9.9E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 PANTHER PTHR33154 1 93 4.3E-15 T 19-04-2016 AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 SMART SM00418 3 80 9.3E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 Gene3D G3DSA:1.10.10.10 1 90 2.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 128 258 3.7E-18 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 SUPERFAMILY SSF46785 1 149 3.35E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 Pfam PF12840 Helix-turn-helix domain 2 56 1.9E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 SUPERFAMILY SSF55961 117 260 2.24E-28 T 19-04-2016 AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 Gene3D G3DSA:3.30.530.20 94 261 1.1E-30 T 19-04-2016 IPR023393 START-like domain AMED_6386 587e5531d1ade3624b783d566e2b77ed 263 PANTHER PTHR33154:SF6 1 93 4.3E-15 T 19-04-2016 AMED_1459 762f10f3546f04117bad5760e9cbc159 313 PANTHER PTHR11695 13 313 3.8E-66 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1459 762f10f3546f04117bad5760e9cbc159 313 Pfam PF00107 Zinc-binding dehydrogenase 156 237 1.3E-8 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_1459 762f10f3546f04117bad5760e9cbc159 313 Gene3D G3DSA:3.90.180.10 1 149 3.1E-40 T 19-04-2016 IPR011032 GroES-like AMED_1459 762f10f3546f04117bad5760e9cbc159 313 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 88 2.6E-9 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1459 762f10f3546f04117bad5760e9cbc159 313 PANTHER PTHR11695:SF294 13 313 3.8E-66 T 19-04-2016 AMED_1459 762f10f3546f04117bad5760e9cbc159 313 Gene3D G3DSA:3.40.50.720 150 238 2.8E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1459 762f10f3546f04117bad5760e9cbc159 313 SUPERFAMILY SSF50129 1 158 4.26E-33 T 19-04-2016 IPR011032 GroES-like AMED_1459 762f10f3546f04117bad5760e9cbc159 313 SUPERFAMILY SSF51735 118 253 3.01E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1459 762f10f3546f04117bad5760e9cbc159 313 SMART SM00829 10 309 1.3E-10 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6991 633cef6dfa49e7056689579fce3ef68e 281 ProSitePatterns PS60000 Chitosanases families 46 and 80 active sites signature. 66 101 - T 19-04-2016 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 AMED_6991 633cef6dfa49e7056689579fce3ef68e 281 PIRSF PIRSF036551 1 281 1.5E-114 T 19-04-2016 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 AMED_6991 633cef6dfa49e7056689579fce3ef68e 281 SUPERFAMILY SSF53955 48 281 3.66E-92 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_6991 633cef6dfa49e7056689579fce3ef68e 281 Gene3D G3DSA:3.30.386.10 39 154 6.9E-57 T 19-04-2016 IPR023099 Glycoside hydrolase, family 46, N-terminal GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 AMED_6991 633cef6dfa49e7056689579fce3ef68e 281 Pfam PF01374 Glycosyl hydrolase family 46 60 269 1.6E-101 T 19-04-2016 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 AMED_6991 633cef6dfa49e7056689579fce3ef68e 281 Gene3D G3DSA:1.20.141.10 155 281 1.2E-64 T 19-04-2016 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 120 1.2E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 Gene3D G3DSA:2.40.110.10 125 221 2.7E-34 T 19-04-2016 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 SUPERFAMILY SSF47203 232 392 2.09E-20 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 PANTHER PTHR10909:SF242 6 394 8.2E-113 T 19-04-2016 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 387 3.2E-22 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 218 6.8E-20 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 PANTHER PTHR10909 6 394 8.2E-113 T 19-04-2016 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 Gene3D G3DSA:1.20.140.10 222 394 6.7E-31 T 19-04-2016 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 SUPERFAMILY SSF56645 4 245 1.01E-68 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7158 f604d2c54c9ea4138578f9a10c4bc3c1 402 Gene3D G3DSA:1.10.540.10 1 122 1.8E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:3.40.50.300 332 445 4.0E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:3.40.50.300 638 753 3.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:3.40.50.300 4 61 4.0E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:3.40.50.300 462 516 3.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Pfam PF00005 ABC transporter 472 674 2.1E-10 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 SUPERFAMILY SSF52540 464 727 9.5E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.20.1580.10 520 637 2.0E-35 T 19-04-2016 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.20.1580.10 261 331 4.9E-34 T 19-04-2016 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.20.1580.10 101 160 4.9E-34 T 19-04-2016 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 PANTHER PTHR32282 10 755 0.0 T 19-04-2016 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 SUPERFAMILY SSF52540 275 423 1.19E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 SUPERFAMILY SSF52540 16 161 1.19E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 Gene3D G3DSA:1.10.8.280 161 257 1.8E-6 T 19-04-2016 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 PANTHER PTHR32282:SF10 10 755 0.0 T 19-04-2016 AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 SMART SM00382 481 720 0.28 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1318 9a2cabc0103b64e9804e84f0c599a75f 757 SMART SM00382 33 418 5.2 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7031 0c4727d18744e1f05b1e0c900edc868a 416 PANTHER PTHR30483 41 356 9.8E-33 T 19-04-2016 AMED_7031 0c4727d18744e1f05b1e0c900edc868a 416 Gene3D G3DSA:3.40.50.2300 182 318 2.8E-16 T 19-04-2016 AMED_7031 0c4727d18744e1f05b1e0c900edc868a 416 Pfam PF13458 Periplasmic binding protein 46 388 3.1E-51 T 19-04-2016 IPR028081 Leucine-binding protein domain AMED_7031 0c4727d18744e1f05b1e0c900edc868a 416 Gene3D G3DSA:3.40.50.2300 319 360 6.6E-23 T 19-04-2016 AMED_7031 0c4727d18744e1f05b1e0c900edc868a 416 Gene3D G3DSA:3.40.50.2300 42 165 6.6E-23 T 19-04-2016 AMED_7031 0c4727d18744e1f05b1e0c900edc868a 416 SUPERFAMILY SSF53822 46 397 8.01E-50 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 SUPERFAMILY SSF54631 1 125 1.01E-33 T 19-04-2016 AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 SMART SM00116 11 59 2.8E-7 T 19-04-2016 IPR000644 CBS domain AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 SMART SM00116 77 124 1.4E-11 T 19-04-2016 IPR000644 CBS domain AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 Gene3D G3DSA:3.10.580.10 2 121 1.1E-33 T 19-04-2016 AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 PANTHER PTHR11911 1 123 1.5E-29 T 19-04-2016 AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 Pfam PF00571 CBS domain 70 124 1.1E-11 T 19-04-2016 IPR000644 CBS domain AMED_5201 dcfaca195af4742425f5433b6dd9dde5 138 Pfam PF00571 CBS domain 4 57 2.6E-13 T 19-04-2016 IPR000644 CBS domain AMED_8594 8d41f973a046723fe38eb6cc44c686f2 300 PANTHER PTHR20883 31 278 8.9E-54 T 19-04-2016 AMED_8594 8d41f973a046723fe38eb6cc44c686f2 300 PANTHER PTHR20883:SF0 31 278 8.9E-54 T 19-04-2016 AMED_8594 8d41f973a046723fe38eb6cc44c686f2 300 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 49 262 3.0E-33 T 19-04-2016 IPR008775 Phytanoyl-CoA dioxygenase AMED_8594 8d41f973a046723fe38eb6cc44c686f2 300 SUPERFAMILY SSF51197 37 297 3.3E-56 T 19-04-2016 AMED_8594 8d41f973a046723fe38eb6cc44c686f2 300 TIGRFAM TIGR02408 ectoine_ThpD: ectoine hydroxylase 24 298 3.3E-130 T 19-04-2016 IPR012774 Ectoine dioxygenase GO:0016706|GO:0055114 KEGG: 00260+1.14.11.-|KEGG: 00361+1.14.11.-|KEGG: 00904+1.14.11.- AMED_8594 8d41f973a046723fe38eb6cc44c686f2 300 Gene3D G3DSA:2.60.120.620 33 277 3.0E-49 T 19-04-2016 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 Gene3D G3DSA:1.10.10.10 8 142 9.2E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 8.8E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 8.8E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 8.8E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 PANTHER PTHR33164 12 150 1.1E-21 T 19-04-2016 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 SMART SM00347 26 126 8.7E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 Pfam PF12802 MarR family 31 90 1.0E-10 T 19-04-2016 AMED_5633 44b5651b6c7d0ffd2c2371c67ea5e9e4 158 SUPERFAMILY SSF46785 8 141 7.72E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 PRINTS PR00421 Thioredoxin family signature 22 30 9.7E-8 T 19-04-2016 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 PRINTS PR00421 Thioredoxin family signature 70 81 9.7E-8 T 19-04-2016 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 PRINTS PR00421 Thioredoxin family signature 30 39 9.7E-8 T 19-04-2016 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 PIRSF PIRSF000077 1 106 3.7E-36 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 Pfam PF00085 Thioredoxin 4 103 1.3E-26 T 19-04-2016 IPR013766 Thioredoxin domain GO:0045454 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 PANTHER PTHR10438 2 107 2.0E-38 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 SUPERFAMILY SSF52833 2 106 6.06E-35 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 104 6.9E-33 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_4986 66bc5bc0947e2da4522f82813bf660bc 111 Gene3D G3DSA:3.40.30.10 2 106 1.1E-32 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2047 07992684799947410bb8ea0746155811 268 Pfam PF01061 ABC-2 type transporter 14 220 9.1E-25 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_2047 07992684799947410bb8ea0746155811 268 PIRSF PIRSF006648 1 267 3.9E-63 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_2047 07992684799947410bb8ea0746155811 268 PANTHER PTHR30294 7 265 1.5E-73 T 19-04-2016 AMED_2047 07992684799947410bb8ea0746155811 268 PANTHER PTHR30294:SF24 7 265 1.5E-73 T 19-04-2016 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PRINTS PR00046 Major sigma-70 factor signature 158 166 3.4E-28 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PRINTS PR00046 Major sigma-70 factor signature 303 318 3.4E-28 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PRINTS PR00046 Major sigma-70 factor signature 318 329 3.4E-28 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PRINTS PR00046 Major sigma-70 factor signature 282 294 3.4E-28 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PRINTS PR00046 Major sigma-70 factor signature 134 147 3.4E-28 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 107 331 6.2E-37 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Gene3D G3DSA:1.10.10.10 273 341 5.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 134 147 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 303 329 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Pfam PF00140 Sigma-70 factor, region 1.2 45 78 4.2E-13 T 19-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PANTHER PTHR30603 1 341 4.0E-159 T 19-04-2016 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Gene3D G3DSA:1.10.10.10 183 234 1.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 SUPERFAMILY SSF88659 183 256 1.44E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Pfam PF04542 Sigma-70 region 2 110 179 5.4E-22 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Pfam PF04539 Sigma-70 region 3 189 264 1.0E-23 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 SUPERFAMILY SSF88659 240 338 1.68E-26 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 PANTHER PTHR30603:SF0 1 341 4.0E-159 T 19-04-2016 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Gene3D G3DSA:1.10.601.10 29 179 8.1E-62 T 19-04-2016 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 Pfam PF04545 Sigma-70, region 4 278 331 2.0E-19 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2568 ca96396f9f74cae01cd680a033a2896d 343 SUPERFAMILY SSF88946 45 180 3.66E-51 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5612 2a101d7947ff08d1a017aff2405bfe80 93 Pfam PF04542 Sigma-70 region 2 27 80 1.3E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5612 2a101d7947ff08d1a017aff2405bfe80 93 PANTHER PTHR30173 3 84 1.5E-19 T 19-04-2016 AMED_5612 2a101d7947ff08d1a017aff2405bfe80 93 Gene3D G3DSA:1.10.1740.10 11 80 2.1E-9 T 19-04-2016 AMED_5612 2a101d7947ff08d1a017aff2405bfe80 93 PANTHER PTHR30173:SF7 3 84 1.5E-19 T 19-04-2016 AMED_5612 2a101d7947ff08d1a017aff2405bfe80 93 SUPERFAMILY SSF88946 11 85 5.1E-11 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1082 15903ed1019eb6377ec075cb80483ee9 279 PANTHER PTHR32243:SF18 1 279 6.4E-108 T 19-04-2016 AMED_1082 15903ed1019eb6377ec075cb80483ee9 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 272 1.6E-21 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1082 15903ed1019eb6377ec075cb80483ee9 279 Gene3D G3DSA:1.10.3720.10 17 266 3.1E-65 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1082 15903ed1019eb6377ec075cb80483ee9 279 SUPERFAMILY SSF161098 12 279 5.14E-74 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1082 15903ed1019eb6377ec075cb80483ee9 279 PANTHER PTHR32243 1 279 6.4E-108 T 19-04-2016 AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 PANTHER PTHR34853 1 407 6.0E-88 T 19-04-2016 AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 PIRSF PIRSF029171 1 404 1.9E-78 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 Gene3D G3DSA:3.40.50.1820 86 260 3.2E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 Gene3D G3DSA:3.40.50.1820 316 391 3.2E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 Pfam PF03583 Secretory lipase 128 400 4.0E-64 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 SUPERFAMILY SSF53474 86 235 5.72E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9107 d36eb1d50f922b4ab3455274c35ca909 407 SUPERFAMILY SSF53474 316 391 5.72E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PANTHER PTHR13789:SF90 7 360 8.8E-92 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 SUPERFAMILY SSF51905 7 166 8.26E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 SUPERFAMILY SSF51905 266 354 8.26E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.6E-45 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 3.6E-45 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 330 346 3.6E-45 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 330 3.6E-45 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 3.6E-45 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 3.6E-45 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.50.50.60 277 316 2.3E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.50.50.60 5 156 2.3E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.30.9.10 157 272 1.3E-14 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 Gene3D G3DSA:3.30.9.10 327 347 1.3E-14 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 PANTHER PTHR13789 7 360 8.8E-92 T 19-04-2016 AMED_1247 232c7591f94b7d17ef3ebdbbfa56aced 472 Pfam PF01494 FAD binding domain 6 343 1.6E-83 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_0385 f4a662577346a4e8c6985f4a613c4b8f 148 SUPERFAMILY SSF50475 2 137 7.3E-19 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0385 f4a662577346a4e8c6985f4a613c4b8f 148 Gene3D G3DSA:2.30.110.10 3 142 7.1E-19 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0385 f4a662577346a4e8c6985f4a613c4b8f 148 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 7 87 2.2E-6 T 19-04-2016 IPR024747 Pyridoxamine 5'-phosphate oxidase-related AMED_0010 6e326a739e029accdeb5683f1526db1a 395 Gene3D G3DSA:1.10.150.130 71 160 7.1E-6 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_0010 6e326a739e029accdeb5683f1526db1a 395 PANTHER PTHR30349:SF20 70 395 1.7E-21 T 19-04-2016 AMED_0010 6e326a739e029accdeb5683f1526db1a 395 Gene3D G3DSA:1.10.443.10 185 373 4.6E-27 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_0010 6e326a739e029accdeb5683f1526db1a 395 SUPERFAMILY SSF56349 70 373 4.71E-40 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_0010 6e326a739e029accdeb5683f1526db1a 395 Pfam PF00589 Phage integrase family 184 374 2.9E-17 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_0010 6e326a739e029accdeb5683f1526db1a 395 PANTHER PTHR30349 70 395 1.7E-21 T 19-04-2016 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 Gene3D G3DSA:3.40.50.2300 1 100 1.3E-37 T 19-04-2016 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 87 6.6E-30 T 19-04-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 PANTHER PTHR30505:SF0 1 483 7.5E-205 T 19-04-2016 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 PANTHER PTHR30505 1 483 7.5E-205 T 19-04-2016 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 3.6E-20 T 19-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 SUPERFAMILY SSF52794 2 98 2.62E-31 T 19-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 126 456 1.2E-111 T 19-04-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AMED_4499 40a21b305ef2e8bd2656a22699dc6b51 483 Pfam PF02378 Phosphotransferase system, EIIC 133 410 3.3E-13 T 19-04-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:2.40.50.140 197 312 4.7E-48 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5204 48a6196493ec839cc308e6de668cfd14 314 Pfam PF04679 ATP dependent DNA ligase C terminal region 213 304 3.7E-28 T 19-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 Pfam PF01068 ATP dependent DNA ligase domain 17 194 3.0E-33 T 19-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 27 35 - T 19-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 9 310 9.1E-88 T 19-04-2016 IPR014146 DNA ligase D, ligase domain AMED_5204 48a6196493ec839cc308e6de668cfd14 314 SUPERFAMILY SSF56091 4 196 8.15E-47 T 19-04-2016 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:3.30.1490.70 152 195 6.0E-21 T 19-04-2016 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:3.30.1490.70 7 31 6.0E-21 T 19-04-2016 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 PANTHER PTHR10459 22 313 1.9E-56 T 19-04-2016 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 SUPERFAMILY SSF50249 198 312 5.57E-30 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5204 48a6196493ec839cc308e6de668cfd14 314 PANTHER PTHR10459:SF70 22 313 1.9E-56 T 19-04-2016 AMED_5204 48a6196493ec839cc308e6de668cfd14 314 Gene3D G3DSA:3.30.470.30 32 143 9.2E-26 T 19-04-2016 AMED_6547 f90fdac33352369abbd2b7243d90b127 246 SMART SM01012 185 240 1.7E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6547 f90fdac33352369abbd2b7243d90b127 246 SMART SM00065 36 183 0.0024 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6547 f90fdac33352369abbd2b7243d90b127 246 SUPERFAMILY SSF52172 167 239 8.95E-11 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6547 f90fdac33352369abbd2b7243d90b127 246 Pfam PF03861 ANTAR domain 188 238 3.7E-21 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6547 f90fdac33352369abbd2b7243d90b127 246 PIRSF PIRSF036625 2 244 4.2E-49 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_6547 f90fdac33352369abbd2b7243d90b127 246 SUPERFAMILY SSF55781 37 184 3.93E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_6547 f90fdac33352369abbd2b7243d90b127 246 Gene3D G3DSA:1.10.10.10 189 241 7.7E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6547 f90fdac33352369abbd2b7243d90b127 246 Pfam PF13185 GAF domain 35 173 1.5E-12 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6547 f90fdac33352369abbd2b7243d90b127 246 Gene3D G3DSA:3.30.450.40 19 186 1.9E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 Gene3D G3DSA:1.10.10.60 7 59 4.0E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 Gene3D G3DSA:1.10.357.10 60 203 7.0E-17 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 8.5E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 PANTHER PTHR30055 1 202 6.1E-38 T 19-04-2016 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 PANTHER PTHR30055:SF54 1 202 6.1E-38 T 19-04-2016 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 9.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 9.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4223 cc9f65a79166ba87eb08c712619dfebe 210 SUPERFAMILY SSF46689 5 78 7.18E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2332 b27fb0a3b410c3c86b008915de33564f 255 SUPERFAMILY SSF109854 9 139 2.75E-9 T 19-04-2016 AMED_2332 b27fb0a3b410c3c86b008915de33564f 255 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 20 228 4.8E-20 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_2332 b27fb0a3b410c3c86b008915de33564f 255 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 22 134 1.9E-16 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_2332 b27fb0a3b410c3c86b008915de33564f 255 PANTHER PTHR40758 5 255 7.1E-36 T 19-04-2016 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 Pfam PF01494 FAD binding domain 5 314 7.7E-19 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 PANTHER PTHR13789 4 360 5.3E-118 T 19-04-2016 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 Gene3D G3DSA:3.50.50.60 4 173 7.4E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 Gene3D G3DSA:3.50.50.60 266 339 7.4E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 SUPERFAMILY SSF51905 265 375 5.28E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 SUPERFAMILY SSF51905 5 167 5.28E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.3E-12 T 19-04-2016 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 8.3E-12 T 19-04-2016 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.3E-12 T 19-04-2016 AMED_4595 58706eacadf0ae6b0e2a496c93b13d77 381 PANTHER PTHR13789:SF246 4 360 5.3E-118 T 19-04-2016 AMED_8058 35550411a6674962f99e26a77abe0959 73 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 11 64 9.4E-21 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMED_8058 35550411a6674962f99e26a77abe0959 73 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 6 49 2.0E-12 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMED_8058 35550411a6674962f99e26a77abe0959 73 PIRSF PIRSF006488 1 73 7.4E-23 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMED_8058 35550411a6674962f99e26a77abe0959 73 Gene3D G3DSA:1.10.287.1040 6 69 1.8E-21 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMED_8058 35550411a6674962f99e26a77abe0959 73 PANTHER PTHR34137 1 69 2.4E-14 T 19-04-2016 AMED_8058 35550411a6674962f99e26a77abe0959 73 Pfam PF02609 Exonuclease VII small subunit 11 61 1.2E-17 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMED_8058 35550411a6674962f99e26a77abe0959 73 SUPERFAMILY SSF116842 6 67 4.45E-17 T 19-04-2016 AMED_8058 35550411a6674962f99e26a77abe0959 73 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 13.858 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 SUPERFAMILY SSF52374 1 165 6.62E-29 T 19-04-2016 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 PIRSF PIRSF004491 1 303 7.3E-92 T 19-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 Gene3D G3DSA:3.40.50.620 1 169 6.5E-59 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 Gene3D G3DSA:2.40.30.30 170 302 3.6E-41 T 19-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 PANTHER PTHR22749 1 301 8.5E-113 T 19-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 SMART SM00904 173 300 1.6E-46 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 SUPERFAMILY SSF82114 164 300 4.8E-38 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 PANTHER PTHR22749:SF0 1 301 8.5E-113 T 19-04-2016 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 Pfam PF06574 FAD synthetase 1 133 1.1E-48 T 19-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 2 299 8.7E-69 T 19-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 AMED_6322 d2757b03ebb85bb478018bc5155ff215 310 Pfam PF01687 Riboflavin kinase 174 299 3.0E-32 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMED_4112 bff54523930abd315d86ad6491479771 1087 Pfam PF05729 NACHT domain 279 438 2.4E-24 T 19-04-2016 AMED_4112 bff54523930abd315d86ad6491479771 1087 PANTHER PTHR24106 1052 1059 4.3E-47 T 19-04-2016 AMED_4112 bff54523930abd315d86ad6491479771 1087 SUPERFAMILY SSF52540 274 404 2.53E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4112 bff54523930abd315d86ad6491479771 1087 SUPERFAMILY SSF52058 797 1023 3.26E-16 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_4112 bff54523930abd315d86ad6491479771 1087 PANTHER PTHR24106:SF149 1052 1059 4.3E-47 T 19-04-2016 AMED_4112 bff54523930abd315d86ad6491479771 1087 PANTHER PTHR24106:SF149 278 662 4.3E-47 T 19-04-2016 AMED_4112 bff54523930abd315d86ad6491479771 1087 Gene3D G3DSA:3.80.10.10 797 1021 1.7E-13 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_4112 bff54523930abd315d86ad6491479771 1087 PANTHER PTHR24106 278 662 4.3E-47 T 19-04-2016 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 PANTHER PTHR10909 249 683 2.1E-137 T 19-04-2016 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 197 311 4.6E-21 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 539 679 1.2E-13 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF47203 539 681 3.38E-14 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.20.140.10 529 683 2.7E-22 T 19-04-2016 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.10.540.10 349 430 1.9E-10 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.20.140.10 197 313 7.4E-28 T 19-04-2016 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF47203 194 313 4.03E-30 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF56645 350 552 4.45E-55 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 SUPERFAMILY SSF56645 1 181 1.57E-11 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:2.40.110.10 432 528 3.1E-31 T 19-04-2016 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 433 525 3.5E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 PANTHER PTHR10909:SF286 249 683 2.1E-137 T 19-04-2016 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Gene3D G3DSA:1.10.540.10 5 112 3.9E-7 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 111 2.6E-5 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2502 fe4ea06b3b93100d26c64a4695ce8ef3 684 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 353 429 6.2E-7 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 SUPERFAMILY SSF51445 11 395 3.37E-91 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4507 cef09e073fb05862d64802c4c86344bc 765 Gene3D G3DSA:3.20.20.300 11 367 8.8E-95 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 SMART SM01217 666 735 2.7E-21 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PANTHER PTHR30620:SF59 91 749 0.0 T 19-04-2016 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PANTHER PTHR30620:SF59 11 46 0.0 T 19-04-2016 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 31 357 5.6E-69 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PANTHER PTHR30620 91 749 0.0 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PANTHER PTHR30620 11 46 0.0 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 107 123 1.4E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 176 192 1.4E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 277 295 1.4E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 130 149 1.4E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 207 223 1.4E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 Gene3D G3DSA:3.40.50.1700 382 628 4.7E-58 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 396 629 1.9E-43 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4507 cef09e073fb05862d64802c4c86344bc 765 Pfam PF14310 Fibronectin type III-like domain 666 735 1.4E-14 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_4507 cef09e073fb05862d64802c4c86344bc 765 SUPERFAMILY SSF52279 396 629 1.83E-42 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PANTHER PTHR24322 11 30 2.1E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PANTHER PTHR24322 169 205 2.1E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PANTHER PTHR24322 46 147 2.1E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 SUPERFAMILY SSF51735 2 277 7.58E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 273 1.2E-37 T 19-04-2016 AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 Gene3D G3DSA:3.40.50.720 1 275 1.0E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 1.1E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.1E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 238 258 1.1E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 1.1E-18 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7188 f04f2d2df7eeac6ce5ce62272378d6a0 285 TIGRFAM TIGR03971 SDR_subfam_1: SDR family mycofactocin-dependent oxidoreductase 4 276 1.9E-102 T 19-04-2016 IPR023985 Mycofactocin-dependent oxidoreductase AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 SMART SM00228 237 308 1.1E-10 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PANTHER PTHR22939 15 322 5.6E-83 T 19-04-2016 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 125 149 6.7E-41 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 184 201 6.7E-41 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 85 105 6.7E-41 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 64 76 6.7E-41 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 162 179 6.7E-41 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PRINTS PR00834 HtrA/DegQ protease family signature 266 278 6.7E-41 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 Pfam PF13180 PDZ domain 237 318 2.7E-13 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 Gene3D G3DSA:2.30.42.10 240 322 1.6E-18 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 SUPERFAMILY SSF50494 33 230 5.84E-51 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 Gene3D G3DSA:2.40.10.10 24 119 1.5E-25 T 19-04-2016 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 Pfam PF13365 Trypsin-like peptidase domain 55 191 2.8E-27 T 19-04-2016 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 SUPERFAMILY SSF50156 208 306 9.07E-17 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 Gene3D G3DSA:2.40.10.10 120 239 1.4E-37 T 19-04-2016 AMED_5332 38b4ef9ec17e30030eb14e5fe6714507 323 PANTHER PTHR22939:SF79 15 322 5.6E-83 T 19-04-2016 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 SUPERFAMILY SSF64288 51 226 3.14E-44 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 PANTHER PTHR11751 108 132 3.8E-17 T 19-04-2016 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 62 1.6E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 PANTHER PTHR11751:SF333 108 132 3.8E-17 T 19-04-2016 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 SMART SM00866 81 220 8.0E-38 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 23 37 8.5E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 53 8.5E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 PANTHER PTHR11751 5 65 3.8E-17 T 19-04-2016 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 PANTHER PTHR11751:SF333 5 65 3.8E-17 T 19-04-2016 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 Pfam PF07702 UTRA domain 85 220 6.8E-41 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 Gene3D G3DSA:1.10.10.10 4 59 1.9E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 SMART SM00345 6 63 2.5E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 Gene3D G3DSA:3.40.1410.10 60 225 4.2E-46 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_3313 d1d38de3546093101ea447bb4a0435d4 232 SUPERFAMILY SSF46785 4 67 6.23E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 SUPERFAMILY SSF89796 5 379 1.57E-123 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 Gene3D G3DSA:3.40.50.10540 3 217 8.3E-99 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 Gene3D G3DSA:3.40.50.10540 306 378 8.3E-99 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 Gene3D G3DSA:3.30.1540.10 223 305 4.0E-30 T 19-04-2016 AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 PANTHER PTHR24023:SF593 45 385 8.1E-25 T 19-04-2016 AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 PANTHER PTHR24023 45 385 8.1E-25 T 19-04-2016 AMED_4852 a1ec2cca14074af8d23bcecb41ce0249 385 Pfam PF02515 CoA-transferase family III 8 371 1.3E-116 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PANTHER PTHR24322:SF356 10 146 1.3E-33 T 19-04-2016 AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PANTHER PTHR24322:SF356 162 193 1.3E-33 T 19-04-2016 AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.2E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 4.2E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 4.2E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 Pfam PF00106 short chain dehydrogenase 6 206 3.0E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.6E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.6E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.6E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 3.6E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.6E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 3.6E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 Gene3D G3DSA:3.40.50.720 3 251 7.5E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7160 7b4a0a7786550654765973cb066bf63b 256 SUPERFAMILY SSF51735 3 251 3.91E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PANTHER PTHR24322 10 146 1.3E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 PANTHER PTHR24322 162 193 1.3E-33 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7160 7b4a0a7786550654765973cb066bf63b 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 SUPERFAMILY SSF55447 172 279 1.7E-18 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 Gene3D G3DSA:3.30.390.50 172 277 3.5E-27 T 19-04-2016 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 PANTHER PTHR11908:SF68 1 277 8.0E-86 T 19-04-2016 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 Gene3D G3DSA:3.30.465.10 53 166 8.4E-38 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 SUPERFAMILY SSF56176 2 166 4.76E-52 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 2 166 2.1E-49 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 PANTHER PTHR11908 1 277 8.0E-86 T 19-04-2016 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 Gene3D G3DSA:3.30.43.10 2 52 6.1E-15 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 172 274 1.1E-9 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_1919 dc5350c0e8907f27e1d8a4b49df7b344 287 SMART SM01092 171 275 6.0E-18 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3789 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 2.9E-20 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3789 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.9E-20 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3789 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 61 73 2.9E-20 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3789 d2b2933d115477068762fab5b03ea242 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 43 59 2.9E-20 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3789 d2b2933d115477068762fab5b03ea242 90 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 82 1.4E-25 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3789 d2b2933d115477068762fab5b03ea242 90 PANTHER PTHR35177 1 88 6.1E-24 T 19-04-2016 AMED_3789 d2b2933d115477068762fab5b03ea242 90 PANTHER PTHR35177:SF2 1 88 6.1E-24 T 19-04-2016 AMED_3789 d2b2933d115477068762fab5b03ea242 90 Pfam PF01455 HupF/HypC family 1 70 7.2E-26 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3789 d2b2933d115477068762fab5b03ea242 90 SUPERFAMILY SSF159127 1 80 9.94E-23 T 19-04-2016 AMED_8615 174281ca3bde066a678d64191108adab 193 PANTHER PTHR30055 2 190 3.4E-23 T 19-04-2016 AMED_8615 174281ca3bde066a678d64191108adab 193 Pfam PF13977 Bacterial transcriptional repressor 93 176 2.2E-8 T 19-04-2016 AMED_8615 174281ca3bde066a678d64191108adab 193 SUPERFAMILY SSF46689 3 79 4.67E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8615 174281ca3bde066a678d64191108adab 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.3E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8615 174281ca3bde066a678d64191108adab 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.3E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8615 174281ca3bde066a678d64191108adab 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.7E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8615 174281ca3bde066a678d64191108adab 193 SUPERFAMILY SSF48498 86 188 1.3E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8615 174281ca3bde066a678d64191108adab 193 Gene3D G3DSA:1.10.357.10 3 188 3.4E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0779 69fcb933d57f7eef79cccb781497c690 344 Gene3D G3DSA:3.40.50.720 170 289 1.7E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0779 69fcb933d57f7eef79cccb781497c690 344 SUPERFAMILY SSF51735 146 309 6.93E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0779 69fcb933d57f7eef79cccb781497c690 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 127 3.2E-24 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_0779 69fcb933d57f7eef79cccb781497c690 344 PANTHER PTHR11695 12 344 6.5E-117 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_0779 69fcb933d57f7eef79cccb781497c690 344 SUPERFAMILY SSF50129 1 167 9.13E-51 T 19-04-2016 IPR011032 GroES-like AMED_0779 69fcb933d57f7eef79cccb781497c690 344 PANTHER PTHR11695:SF601 12 344 6.5E-117 T 19-04-2016 AMED_0779 69fcb933d57f7eef79cccb781497c690 344 Gene3D G3DSA:3.90.180.10 1 169 3.0E-39 T 19-04-2016 IPR011032 GroES-like AMED_0779 69fcb933d57f7eef79cccb781497c690 344 Pfam PF00107 Zinc-binding dehydrogenase 178 306 2.2E-21 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 PANTHER PTHR11746 122 314 8.7E-41 T 19-04-2016 AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 Gene3D G3DSA:3.40.50.150 88 314 3.7E-48 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 Pfam PF00891 O-methyltransferase 119 312 2.3E-43 T 19-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 Gene3D G3DSA:1.10.10.10 8 71 7.6E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 SUPERFAMILY SSF46785 5 76 7.01E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 PANTHER PTHR11746:SF71 122 314 8.7E-41 T 19-04-2016 AMED_5401 3c89f01c863a513ff3dbd4a6da755c4f 326 SUPERFAMILY SSF53335 119 314 3.0E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 PANTHER PTHR21071:SF6 12 347 6.5E-122 T 19-04-2016 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 351 76.933 T 19-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 SUPERFAMILY SSF56194 211 349 1.7E-32 T 19-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 12 347 3.1E-47 T 19-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.30.43.10 11 74 8.5E-22 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 PANTHER PTHR21071 12 347 6.5E-122 T 19-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.30.465.10 79 190 2.0E-48 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.30.465.10 224 240 2.0E-48 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 214 347 7.5E-38 T 19-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 SUPERFAMILY SSF56176 12 183 2.49E-39 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Gene3D G3DSA:3.90.78.10 241 349 3.6E-43 T 19-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_0450 488f75ad9d9f0b7a6989b9660ecf45d0 351 Pfam PF01565 FAD binding domain 26 153 3.0E-24 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_8365 813392c4373ffbbeceefb2ebf206296c 131 PANTHER PTHR11803 1 130 8.9E-28 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_8365 813392c4373ffbbeceefb2ebf206296c 131 Gene3D G3DSA:3.30.1330.40 2 129 2.3E-31 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_8365 813392c4373ffbbeceefb2ebf206296c 131 SUPERFAMILY SSF55298 2 129 3.93E-29 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_8365 813392c4373ffbbeceefb2ebf206296c 131 Pfam PF01042 Endoribonuclease L-PSP 14 127 1.7E-19 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:3.40.50.1700 429 684 4.9E-53 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:2.60.40.10 917 1013 1.1E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF14310 Fibronectin type III-like domain 719 791 2.4E-14 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF02368 Bacterial Ig-like domain (group 2) 871 914 6.5E-7 T 19-04-2016 IPR003343 Bacterial Ig-like, group 2 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:3.20.20.300 43 415 3.5E-84 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Gene3D G3DSA:2.60.40.1080 869 914 2.9E-8 T 19-04-2016 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 172 323 7.0E-31 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 SMART SM01217 718 791 5.3E-17 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF49373 868 914 3.77E-8 T 19-04-2016 IPR008964 Invasin/intimin cell-adhesion fragments AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 444 681 5.9E-46 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 926 1005 5.0E-17 T 19-04-2016 IPR018905 Alpha-galactosidase, NEW3 domain AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 PANTHER PTHR30620:SF8 355 805 9.1E-202 T 19-04-2016 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 PANTHER PTHR30620:SF8 170 313 9.1E-202 T 19-04-2016 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 PANTHER PTHR30620:SF8 13 150 9.1E-202 T 19-04-2016 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 PANTHER PTHR30620 355 805 9.1E-202 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 PANTHER PTHR30620 170 313 9.1E-202 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 PANTHER PTHR30620 13 150 9.1E-202 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF51445 346 442 1.47E-69 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF51445 42 317 1.47E-69 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4002 d116e15472c1ebb0717f47c2efa36b92 1218 SUPERFAMILY SSF52279 444 684 2.88E-39 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7395 96eb7ba264adfb376d64f071003a4ad4 332 Pfam PF13692 Glycosyl transferases group 1 163 294 2.4E-33 T 19-04-2016 AMED_7395 96eb7ba264adfb376d64f071003a4ad4 332 PANTHER PTHR12526 47 332 4.7E-57 T 19-04-2016 AMED_7395 96eb7ba264adfb376d64f071003a4ad4 332 SUPERFAMILY SSF53756 39 330 1.78E-69 T 19-04-2016 AMED_7395 96eb7ba264adfb376d64f071003a4ad4 332 Pfam PF13439 Glycosyltransferase Family 4 36 140 3.1E-13 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_7395 96eb7ba264adfb376d64f071003a4ad4 332 Gene3D G3DSA:3.40.50.2000 149 309 7.5E-31 T 19-04-2016 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 SUPERFAMILY SSF50370 176 305 2.42E-41 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 Gene3D G3DSA:3.20.20.70 9 76 3.7E-24 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 SMART SM00458 178 306 1.4E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 PRINTS PR00740 Glycosyl hydrolase family 27 signature 38 59 1.5E-6 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 PRINTS PR00740 Glycosyl hydrolase family 27 signature 17 36 1.5E-6 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 Gene3D G3DSA:2.80.10.50 183 305 3.4E-43 T 19-04-2016 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 SUPERFAMILY SSF51011 84 171 1.26E-15 T 19-04-2016 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 SUPERFAMILY SSF51445 11 83 7.9E-16 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 Pfam PF16499 Alpha galactosidase A 14 130 4.2E-24 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 Pfam PF00652 Ricin-type beta-trefoil lectin domain 181 303 4.2E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 Gene3D G3DSA:2.60.40.1180 77 173 3.3E-29 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_8990 b9e1a5e531d4075365173ebe6ad70baa 308 PANTHER PTHR11452 4 171 2.5E-49 T 19-04-2016 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 PANTHER PTHR10438 57 166 3.3E-35 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 PANTHER PTHR10438:SF282 57 166 3.3E-35 T 19-04-2016 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 Pfam PF14561 Tetratricopeptide repeat 243 323 5.2E-18 T 19-04-2016 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 Gene3D G3DSA:3.40.30.10 53 164 2.9E-33 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 Pfam PF00085 Thioredoxin 59 162 7.0E-24 T 19-04-2016 IPR013766 Thioredoxin domain GO:0045454 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 PANTHER PTHR10438 284 305 3.3E-35 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 Gene3D G3DSA:1.25.40.10 245 323 5.8E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 PANTHER PTHR10438:SF282 284 305 3.3E-35 T 19-04-2016 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 ProSitePatterns PS00194 Thioredoxin family active site. 81 99 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMED_1602 2ada22b19ec86e9de2a993448e066b89 323 SUPERFAMILY SSF52833 51 166 3.39E-33 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6775 07a871a27239198da6d1dfbf1748d464 387 Pfam PF12802 MarR family 18 66 2.1E-8 T 19-04-2016 AMED_6775 07a871a27239198da6d1dfbf1748d464 387 SUPERFAMILY SSF46785 10 72 3.03E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6775 07a871a27239198da6d1dfbf1748d464 387 PANTHER PTHR18964:SF109 60 376 3.1E-57 T 19-04-2016 AMED_6775 07a871a27239198da6d1dfbf1748d464 387 Gene3D G3DSA:1.10.10.10 9 75 1.0E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6775 07a871a27239198da6d1dfbf1748d464 387 SUPERFAMILY SSF53067 82 371 3.41E-42 T 19-04-2016 AMED_6775 07a871a27239198da6d1dfbf1748d464 387 PANTHER PTHR18964 60 376 3.1E-57 T 19-04-2016 AMED_6775 07a871a27239198da6d1dfbf1748d464 387 Pfam PF00480 ROK family 85 366 1.7E-40 T 19-04-2016 IPR000600 ROK family AMED_6775 07a871a27239198da6d1dfbf1748d464 387 Gene3D G3DSA:3.30.420.40 217 350 1.8E-41 T 19-04-2016 AMED_6775 07a871a27239198da6d1dfbf1748d464 387 Gene3D G3DSA:3.30.420.40 82 216 4.5E-31 T 19-04-2016 AMED_6305 6bf57f387c3a52c07e3f560969830c94 250 PANTHER PTHR34934 16 230 3.5E-52 T 19-04-2016 AMED_6305 6bf57f387c3a52c07e3f560969830c94 250 Hamap MF_01408 Thymidylate synthase ThyX [thyX]. 7 238 26.294 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMED_6305 6bf57f387c3a52c07e3f560969830c94 250 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 8 230 1.4E-59 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMED_6305 6bf57f387c3a52c07e3f560969830c94 250 Pfam PF02511 Thymidylate synthase complementing protein 31 222 9.1E-54 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMED_6305 6bf57f387c3a52c07e3f560969830c94 250 SUPERFAMILY SSF69796 32 235 1.31E-60 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMED_5452 57e2902793b81016d34fe11850dab6c4 184 SUPERFAMILY SSF50370 52 177 1.09E-22 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5452 57e2902793b81016d34fe11850dab6c4 184 Pfam PF00652 Ricin-type beta-trefoil lectin domain 94 177 9.8E-8 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5452 57e2902793b81016d34fe11850dab6c4 184 Gene3D G3DSA:2.80.10.50 26 179 6.6E-26 T 19-04-2016 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 Pfam PF05506 Domain of unknown function (DUF756) 576 656 1.1E-11 T 19-04-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 Pfam PF05506 Domain of unknown function (DUF756) 492 570 2.8E-15 T 19-04-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 PANTHER PTHR31956 4 505 1.4E-179 T 19-04-2016 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 PANTHER PTHR31956:SF1 4 505 1.4E-179 T 19-04-2016 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 SUPERFAMILY SSF53649 146 414 5.23E-6 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 5 668 6.9E-256 T 19-04-2016 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 AMED_3228 8ba9a1565919b05afdf776197fd3293e 672 Pfam PF04185 Phosphoesterase family 44 424 4.0E-120 T 19-04-2016 IPR007312 Phosphoesterase GO:0016788 AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 Gene3D G3DSA:3.60.21.10 86 238 1.7E-17 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 Gene3D G3DSA:3.60.21.10 1 34 1.7E-17 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 PANTHER PTHR12905 1 260 2.6E-17 T 19-04-2016 AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 PANTHER PTHR12905:SF0 1 260 2.6E-17 T 19-04-2016 AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 Pfam PF00149 Calcineurin-like phosphoesterase 2 235 1.6E-6 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 SUPERFAMILY SSF56300 88 260 5.84E-30 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_2447 44be8df927f4029be3d3648d0bf513a2 264 SUPERFAMILY SSF56300 2 40 5.84E-30 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_0961 f4f8747e7b257648f9f832c49715e03e 127 Pfam PF12680 SnoaL-like domain 12 109 1.4E-13 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_0961 f4f8747e7b257648f9f832c49715e03e 127 SUPERFAMILY SSF54427 4 117 1.65E-24 T 19-04-2016 IPR032710 NTF2-like domain AMED_0961 f4f8747e7b257648f9f832c49715e03e 127 Gene3D G3DSA:3.10.450.50 3 112 1.0E-11 T 19-04-2016 IPR032710 NTF2-like domain AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 Gene3D G3DSA:3.20.20.60 25 288 1.0E-109 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 Pfam PF02548 Ketopantoate hydroxymethyltransferase 26 282 6.1E-107 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 PANTHER PTHR20881 8 287 8.7E-139 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 SUPERFAMILY SSF51621 26 285 7.85E-101 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 27 288 5.6E-90 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 PIRSF PIRSF000388 19 289 5.9E-107 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_1209 9289b3d1e1fd2f29ff2ba31af52cafe5 289 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 27 287 41.983 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 Gene3D G3DSA:1.10.10.10 98 155 3.9E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 PANTHER PTHR30173 1 368 9.9E-126 T 19-04-2016 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 SUPERFAMILY SSF88659 98 155 6.11E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 PANTHER PTHR30173:SF7 1 368 9.9E-126 T 19-04-2016 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 Gene3D G3DSA:1.10.1740.10 4 74 7.1E-9 T 19-04-2016 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 Pfam PF04542 Sigma-70 region 2 7 73 8.4E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 SUPERFAMILY SSF88946 4 70 7.85E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8897 873b86a9cf0a6abe39052e71c18d5669 398 Pfam PF08281 Sigma-70, region 4 103 154 1.5E-11 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 PANTHER PTHR11751 1 337 1.4E-62 T 19-04-2016 AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 194 207 - T 19-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 Gene3D G3DSA:3.90.1150.10 242 337 1.3E-15 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 PANTHER PTHR11751:SF3 1 337 1.4E-62 T 19-04-2016 AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 SUPERFAMILY SSF53383 15 336 4.78E-60 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 Pfam PF00155 Aminotransferase class I and II 28 331 1.7E-30 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_7051 e1d87e8bc87207af90c029494c8c554a 338 Gene3D G3DSA:3.40.640.10 30 239 9.8E-47 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_6799 290d8bb8bc4d3d6f297930b17f8542c1 207 PANTHER PTHR14239 1 190 5.6E-93 T 19-04-2016 AMED_6799 290d8bb8bc4d3d6f297930b17f8542c1 207 SUPERFAMILY SSF51735 4 190 3.17E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6799 290d8bb8bc4d3d6f297930b17f8542c1 207 PANTHER PTHR14239:SF10 1 190 5.6E-93 T 19-04-2016 AMED_6799 290d8bb8bc4d3d6f297930b17f8542c1 207 Gene3D G3DSA:3.40.50.720 4 191 9.4E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6799 290d8bb8bc4d3d6f297930b17f8542c1 207 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 93 3.2E-10 T 19-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 Gene3D G3DSA:3.40.50.980 168 320 2.6E-36 T 19-04-2016 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 Pfam PF00501 AMP-binding enzyme 11 413 2.0E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 SUPERFAMILY SSF56801 6 507 1.96E-136 T 19-04-2016 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 Gene3D G3DSA:3.30.300.30 408 505 8.2E-29 T 19-04-2016 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 Gene3D G3DSA:2.30.38.10 332 404 3.3E-27 T 19-04-2016 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 PANTHER PTHR24096 1 504 6.2E-137 T 19-04-2016 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 Gene3D G3DSA:3.40.50.980 7 167 6.4E-29 T 19-04-2016 AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3494 86b4e272ddc3e8244633a5b80cbaedb6 510 Pfam PF13193 AMP-binding enzyme C-terminal domain 422 497 6.3E-20 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7755 00636e29fc6a4c33deb40141080574d8 181 Gene3D G3DSA:3.90.79.10 3 174 1.7E-37 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7755 00636e29fc6a4c33deb40141080574d8 181 PANTHER PTHR11839 11 181 3.0E-26 T 19-04-2016 AMED_7755 00636e29fc6a4c33deb40141080574d8 181 SUPERFAMILY SSF55811 4 174 6.23E-35 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7755 00636e29fc6a4c33deb40141080574d8 181 Pfam PF00293 NUDIX domain 42 155 1.4E-9 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_7755 00636e29fc6a4c33deb40141080574d8 181 PANTHER PTHR11839:SF9 11 181 3.0E-26 T 19-04-2016 AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 Gene3D G3DSA:3.30.1180.10 155 278 3.2E-42 T 19-04-2016 AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 Gene3D G3DSA:3.40.50.10170 3 147 5.8E-45 T 19-04-2016 AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 SUPERFAMILY SSF82549 2 278 6.54E-75 T 19-04-2016 AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 PANTHER PTHR33434:SF2 2 277 2.1E-67 T 19-04-2016 AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 278 2.2E-79 T 19-04-2016 IPR003797 DegV AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 PANTHER PTHR33434 2 277 2.1E-67 T 19-04-2016 AMED_6691 03065f63f29abdf3607a863b2e55ffa2 285 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 277 1.7E-84 T 19-04-2016 IPR003797 DegV AMED_8959 37dd3dc9e247e5632691af93f151ccd2 260 Pfam PF13460 NAD(P)H-binding 7 164 2.0E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8959 37dd3dc9e247e5632691af93f151ccd2 260 Gene3D G3DSA:3.40.50.720 1 196 1.2E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8959 37dd3dc9e247e5632691af93f151ccd2 260 SUPERFAMILY SSF51735 3 253 2.4E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8959 37dd3dc9e247e5632691af93f151ccd2 260 PANTHER PTHR14194 1 259 1.1E-37 T 19-04-2016 AMED_8959 37dd3dc9e247e5632691af93f151ccd2 260 PANTHER PTHR14194:SF21 1 259 1.1E-37 T 19-04-2016 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 116 151 - T 19-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 Gene3D G3DSA:3.30.420.10 3 159 1.8E-56 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 64 80 7.4E-38 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 6 19 7.4E-38 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 86 102 7.4E-38 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 110 129 7.4E-38 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 142 154 7.4E-38 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 PANTHER PTHR30194 1 173 5.4E-64 T 19-04-2016 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 5 154 8.1E-58 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 3 157 45.643 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 SUPERFAMILY SSF53098 4 158 4.17E-44 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5301 e84052ae861df584fe58d06139bf7f67 196 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 5 155 3.1E-32 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 Pfam PF02057 Glycosyl hydrolase family 59 10 662 2.5E-96 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 Pfam PF00652 Ricin-type beta-trefoil lectin domain 671 792 3.1E-26 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 PANTHER PTHR15172 5 665 6.9E-142 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 Gene3D G3DSA:3.20.20.80 48 349 4.8E-23 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 SUPERFAMILY SSF51445 46 351 1.14E-31 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 Gene3D G3DSA:2.80.10.50 671 793 5.0E-39 T 19-04-2016 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 PRINTS PR00850 Glycosyl hydrolase family 59 signature 342 366 1.6E-10 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 PRINTS PR00850 Glycosyl hydrolase family 59 signature 536 565 1.6E-10 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 PRINTS PR00850 Glycosyl hydrolase family 59 signature 107 131 1.6E-10 T 19-04-2016 IPR001286 Glycoside hydrolase, family 59 GO:0004336|GO:0006683 KEGG: 00600+3.2.1.46 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 PANTHER PTHR15172:SF1 5 665 6.9E-142 T 19-04-2016 AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 SMART SM00458 669 795 2.0E-25 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3993 a772cced8743ab08e7b1d945f73c0be9 795 SUPERFAMILY SSF50370 670 793 4.58E-37 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2994 d4cdbf61206fd34bff4ddaa92897596b 407 Pfam PF13556 PucR C-terminal helix-turn-helix domain 335 393 8.2E-20 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_2994 d4cdbf61206fd34bff4ddaa92897596b 407 PANTHER PTHR33744 123 403 7.3E-24 T 19-04-2016 AMED_0844 539be8777ede08cba55b6d35e359843e 145 PANTHER PTHR33204 12 145 1.3E-52 T 19-04-2016 AMED_0844 539be8777ede08cba55b6d35e359843e 145 Pfam PF01638 HxlR-like helix-turn-helix 19 99 5.3E-18 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_0844 539be8777ede08cba55b6d35e359843e 145 SUPERFAMILY SSF46785 12 139 1.58E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0844 539be8777ede08cba55b6d35e359843e 145 Gene3D G3DSA:1.10.10.10 12 100 4.0E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0844 539be8777ede08cba55b6d35e359843e 145 PANTHER PTHR33204:SF10 12 145 1.3E-52 T 19-04-2016 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 PANTHER PTHR12592 4 474 9.0E-98 T 19-04-2016 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 Gene3D G3DSA:3.40.1190.20 221 473 3.6E-77 T 19-04-2016 IPR029056 Ribokinase-like AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 PANTHER PTHR12592:SF0 4 474 9.0E-98 T 19-04-2016 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 20 203 4.4E-29 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 Pfam PF01256 Carbohydrate kinase 237 458 8.5E-54 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 PIRSF PIRSF017184 3 477 3.4E-96 T 19-04-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 228 471 1.0E-44 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 414 424 - T 19-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 4 204 19.577 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 Pfam PF03853 YjeF-related protein N-terminus 25 184 4.3E-37 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 Gene3D G3DSA:3.40.50.10260 4 220 1.7E-54 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 SUPERFAMILY SSF53613 216 472 6.22E-57 T 19-04-2016 IPR029056 Ribokinase-like AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 SUPERFAMILY SSF64153 4 235 1.31E-50 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMED_0737 aa868d57e2149e3c7a057b06ed9dd880 479 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 214 476 19.227 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMED_4673 f98116f86d5f7e348ae70b4c684f0b3d 379 Pfam PF00924 Mechanosensitive ion channel 142 282 3.1E-24 T 19-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMED_4673 f98116f86d5f7e348ae70b4c684f0b3d 379 SUPERFAMILY SSF50182 179 244 2.78E-13 T 19-04-2016 IPR010920 LSM domain AMED_4673 f98116f86d5f7e348ae70b4c684f0b3d 379 Gene3D G3DSA:2.30.30.60 195 243 5.2E-7 T 19-04-2016 AMED_4673 f98116f86d5f7e348ae70b4c684f0b3d 379 PANTHER PTHR30566 80 357 3.5E-89 T 19-04-2016 AMED_4673 f98116f86d5f7e348ae70b4c684f0b3d 379 PANTHER PTHR30566:SF10 80 357 3.5E-89 T 19-04-2016 AMED_0567 dd0754bfbfb47c3a571d731297fddc80 215 Gene3D G3DSA:3.40.50.10320 11 209 1.6E-34 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_0567 dd0754bfbfb47c3a571d731297fddc80 215 Pfam PF02585 GlcNAc-PI de-N-acetylase 14 125 1.6E-13 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_0567 dd0754bfbfb47c3a571d731297fddc80 215 SUPERFAMILY SSF102588 11 209 1.27E-32 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_1182 3816341422343d82d1a5a062d2b2f388 411 Gene3D G3DSA:3.30.390.30 323 393 1.2E-9 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 Pfam PF14759 Reductase C-terminal 323 388 2.3E-6 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_1182 3816341422343d82d1a5a062d2b2f388 411 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 297 3.1E-42 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PANTHER PTHR22912 3 336 1.1E-67 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 3.7E-17 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.7E-17 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 3.7E-17 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 3.7E-17 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 3.7E-17 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 SUPERFAMILY SSF55424 316 393 2.88E-10 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 Gene3D G3DSA:3.50.50.60 101 308 2.0E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 SUPERFAMILY SSF51905 3 189 2.97E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PANTHER PTHR22912:SF180 3 336 1.1E-67 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 Gene3D G3DSA:3.50.50.60 2 100 7.5E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 SUPERFAMILY SSF51905 143 308 1.69E-22 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 276 1.1E-12 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 1.1E-12 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 1.1E-12 T 19-04-2016 AMED_1182 3816341422343d82d1a5a062d2b2f388 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.1E-12 T 19-04-2016 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 Pfam PF00072 Response regulator receiver domain 4 115 5.2E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 SUPERFAMILY SSF52172 3 134 5.55E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6492 9208f6a9271deeb8da12fe75de269273 225 ProSitePatterns PS00622 LuxR-type HTH domain signature. 173 200 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 Gene3D G3DSA:1.10.10.10 123 220 5.6E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6492 9208f6a9271deeb8da12fe75de269273 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 213 3.0E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 173 3.7E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 189 3.7E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 201 3.7E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 PANTHER PTHR26402:SF151 2 218 2.4E-93 T 19-04-2016 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 Gene3D G3DSA:3.40.50.2300 3 122 4.0E-38 T 19-04-2016 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 SUPERFAMILY SSF46894 149 220 5.78E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 SMART SM00448 2 115 7.1E-34 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 PANTHER PTHR26402 2 218 2.4E-93 T 19-04-2016 AMED_6492 9208f6a9271deeb8da12fe75de269273 225 SMART SM00421 156 213 2.9E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0663 67fa394ca152ac693b44541a58dac10a 240 SUPERFAMILY SSF51206 29 153 2.09E-20 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_0663 67fa394ca152ac693b44541a58dac10a 240 SMART SM00100 18 145 3.6E-10 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_0663 67fa394ca152ac693b44541a58dac10a 240 Pfam PF13545 Crp-like helix-turn-helix domain 163 235 4.9E-10 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_0663 67fa394ca152ac693b44541a58dac10a 240 Gene3D G3DSA:1.10.10.10 159 237 1.0E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0663 67fa394ca152ac693b44541a58dac10a 240 Pfam PF00027 Cyclic nucleotide-binding domain 38 129 5.6E-15 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_0663 67fa394ca152ac693b44541a58dac10a 240 SUPERFAMILY SSF46785 162 237 5.72E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0663 67fa394ca152ac693b44541a58dac10a 240 PANTHER PTHR24567 41 238 4.7E-28 T 19-04-2016 AMED_0663 67fa394ca152ac693b44541a58dac10a 240 Gene3D G3DSA:2.60.120.10 29 154 6.7E-23 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5794 a87ba61a169f02ad2dd661f15eb83ceb 657 Pfam PF12770 CHAT domain 481 616 2.6E-10 T 19-04-2016 IPR024983 CHAT domain AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PANTHER PTHR10422 15 557 5.0E-287 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 Gene3D G3DSA:1.20.210.10 26 552 9.8E-191 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 38 481 3.6E-149 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 SUPERFAMILY SSF81442 28 537 6.28E-177 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PANTHER PTHR10422:SF6 15 557 5.0E-287 T 19-04-2016 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 31 534 1.1E-214 T 19-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 257 278 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 178 196 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 325 346 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 360 378 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 146 158 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 438 459 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 103 127 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 29 54 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 236 257 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 388 407 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 303 318 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 207 226 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 PRINTS PR01165 Cytochrome c oxidase subunit I signature 76 99 5.7E-101 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_5716 e213ee33646df7b264daee5fbcfe7a9b 568 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 259 313 - T 19-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_6674 e7d75c31f49ad852aa6eee34d1081ed1 169 SUPERFAMILY SSF46785 15 156 2.04E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6674 e7d75c31f49ad852aa6eee34d1081ed1 169 SMART SM00347 39 142 3.0E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6674 e7d75c31f49ad852aa6eee34d1081ed1 169 PANTHER PTHR33164:SF1 14 166 1.0E-31 T 19-04-2016 AMED_6674 e7d75c31f49ad852aa6eee34d1081ed1 169 Gene3D G3DSA:1.10.10.10 14 156 1.4E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6674 e7d75c31f49ad852aa6eee34d1081ed1 169 Pfam PF12802 MarR family 44 104 3.2E-11 T 19-04-2016 AMED_6674 e7d75c31f49ad852aa6eee34d1081ed1 169 PANTHER PTHR33164 14 166 1.0E-31 T 19-04-2016 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 1 372 8.5E-134 T 19-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 PANTHER PTHR22572 2 372 1.0E-140 T 19-04-2016 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 Gene3D G3DSA:3.90.550.10 3 281 4.9E-69 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 Gene3D G3DSA:3.90.550.10 319 362 4.9E-69 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 92 100 - T 19-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 SUPERFAMILY SSF53448 2 274 4.28E-66 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 SUPERFAMILY SSF53448 336 353 4.28E-66 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 Pfam PF00483 Nucleotidyl transferase 3 270 4.4E-66 T 19-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 190 200 - T 19-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 PANTHER PTHR22572:SF10 2 372 1.0E-140 T 19-04-2016 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 7 26 - T 19-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 1 398 44.766 T 19-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 AMED_4463 6da788bed57683bc1f3fee475ccbab4c 399 SUPERFAMILY SSF51161 305 390 8.87E-17 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_7358 7117e4d177681baf7d677b401e974b2f 130 SUPERFAMILY SSF160113 5 58 3.92E-6 T 19-04-2016 IPR010879 Domain of unknown function DUF1508 AMED_7358 7117e4d177681baf7d677b401e974b2f 130 SUPERFAMILY SSF160113 62 107 3.14E-6 T 19-04-2016 IPR010879 Domain of unknown function DUF1508 AMED_7358 7117e4d177681baf7d677b401e974b2f 130 Gene3D G3DSA:3.30.160.160 61 98 1.9E-4 T 19-04-2016 IPR010879 Domain of unknown function DUF1508 AMED_7358 7117e4d177681baf7d677b401e974b2f 130 Pfam PF07411 Domain of unknown function (DUF1508) 63 107 1.1E-5 T 19-04-2016 IPR010879 Domain of unknown function DUF1508 AMED_3677 51e58b1dd25303ee97be828a7206c54a 984 Gene3D G3DSA:3.30.379.10 61 184 4.3E-19 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_3677 51e58b1dd25303ee97be828a7206c54a 984 PANTHER PTHR37842 3 984 2.8E-222 T 19-04-2016 AMED_3677 51e58b1dd25303ee97be828a7206c54a 984 Pfam PF15979 Glycosyl hydrolase family 115 202 553 1.8E-128 T 19-04-2016 IPR031924 Glycosyl hydrolase family 115 AMED_0108 da1168499bb7df062619dc573058ae63 360 PANTHER PTHR30298 1 360 1.3E-30 T 19-04-2016 AMED_0108 da1168499bb7df062619dc573058ae63 360 Pfam PF01609 Transposase DDE domain 97 326 2.5E-16 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_0108 da1168499bb7df062619dc573058ae63 360 Pfam PF13808 DDE_Tnp_1-associated 1 80 4.6E-14 T 19-04-2016 IPR032806 H repeat-associated protein, N-terminal AMED_4487 d215cc9f0786bf7e581e535b54f0af2f 404 Gene3D G3DSA:3.40.50.2000 277 377 3.2E-7 T 19-04-2016 AMED_4487 d215cc9f0786bf7e581e535b54f0af2f 404 PANTHER PTHR11926:SF77 1 397 1.4E-72 T 19-04-2016 AMED_4487 d215cc9f0786bf7e581e535b54f0af2f 404 SUPERFAMILY SSF53756 5 401 2.55E-85 T 19-04-2016 AMED_4487 d215cc9f0786bf7e581e535b54f0af2f 404 Gene3D G3DSA:3.40.50.2000 5 264 1.7E-63 T 19-04-2016 AMED_4487 d215cc9f0786bf7e581e535b54f0af2f 404 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 65 7.4E-8 T 19-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_4487 d215cc9f0786bf7e581e535b54f0af2f 404 PANTHER PTHR11926 1 397 1.4E-72 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PANTHER PTHR24363:SF0 185 502 3.5E-87 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 Gene3D G3DSA:3.30.200.20 267 356 4.7E-13 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 Pfam PF00069 Protein kinase domain 276 483 3.3E-27 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 Pfam PF16919 Protein kinase G rubredoxin domain 183 275 6.6E-32 T 19-04-2016 IPR031634 Protein kinase G, rubredoxin domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 SMART SM00220 276 533 1.2E-12 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PRINTS PR01217 Proline rich extensin signature 134 159 2.9E-10 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PRINTS PR01217 Proline rich extensin signature 93 109 2.9E-10 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PRINTS PR01217 Proline rich extensin signature 112 129 2.9E-10 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PRINTS PR01217 Proline rich extensin signature 59 80 2.9E-10 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PRINTS PR01217 Proline rich extensin signature 21 37 2.9E-10 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 Gene3D G3DSA:1.10.510.10 357 482 2.5E-22 T 19-04-2016 AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 SUPERFAMILY SSF56112 267 477 1.27E-40 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0348 3c07e30e6f571ef602d6c4d60c361644 658 PANTHER PTHR24363 185 502 3.5E-87 T 19-04-2016 AMED_3021 195e9fc30481b134605c453d5ddc4280 334 Gene3D G3DSA:2.60.120.10 34 270 1.9E-58 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3021 195e9fc30481b134605c453d5ddc4280 334 PANTHER PTHR13903:SF4 1 314 1.5E-128 T 19-04-2016 AMED_3021 195e9fc30481b134605c453d5ddc4280 334 Pfam PF02678 Pirin 43 144 5.3E-30 T 19-04-2016 IPR003829 Pirin, N-terminal domain AMED_3021 195e9fc30481b134605c453d5ddc4280 334 SUPERFAMILY SSF51182 42 308 3.24E-66 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3021 195e9fc30481b134605c453d5ddc4280 334 Pfam PF05726 Pirin C-terminal cupin domain 196 294 4.9E-16 T 19-04-2016 IPR008778 Pirin, C-terminal domain AMED_3021 195e9fc30481b134605c453d5ddc4280 334 PANTHER PTHR13903 1 314 1.5E-128 T 19-04-2016 IPR012093 Pirin AMED_3021 195e9fc30481b134605c453d5ddc4280 334 PIRSF PIRSF006232 22 305 7.2E-77 T 19-04-2016 IPR012093 Pirin AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 SUPERFAMILY SSF51905 291 379 9.55E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 SUPERFAMILY SSF51905 1 160 9.55E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 PANTHER PTHR13789:SF169 1 372 7.3E-68 T 19-04-2016 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 Gene3D G3DSA:3.50.50.60 1 165 9.6E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 Gene3D G3DSA:3.50.50.60 292 370 9.6E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 PANTHER PTHR13789 1 372 7.3E-68 T 19-04-2016 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 Pfam PF01494 FAD binding domain 1 156 2.4E-8 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1270 9b73f6acdee5f9a3a44a79542b1a2acd 383 Pfam PF01494 FAD binding domain 306 340 3.4E-8 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 57 104 8.5E-9 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 PANTHER PTHR11908 51 188 1.6E-45 T 19-04-2016 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 SUPERFAMILY SSF54292 53 129 2.36E-26 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 SUPERFAMILY SSF47741 137 201 3.93E-28 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 Gene3D G3DSA:1.10.150.120 126 202 1.4E-30 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 Gene3D G3DSA:3.10.20.30 52 125 7.1E-32 T 19-04-2016 IPR012675 Beta-grasp domain AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 Pfam PF01799 [2Fe-2S] binding domain 124 198 3.9E-29 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 90 98 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_3722 c1172348b5c26b839894e0f214dd05a7 203 PANTHER PTHR11908:SF66 51 188 1.6E-45 T 19-04-2016 AMED_3528 51232574ddf2445f164497f996690578 499 SUPERFAMILY SSF52540 5 106 4.25E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3528 51232574ddf2445f164497f996690578 499 SUPERFAMILY SSF52540 156 481 4.25E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3528 51232574ddf2445f164497f996690578 499 Pfam PF13361 UvrD-like helicase C-terminal domain 408 473 1.5E-7 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMED_3528 51232574ddf2445f164497f996690578 499 Pfam PF00580 UvrD/REP helicase N-terminal domain 206 249 2.7E-10 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMED_3528 51232574ddf2445f164497f996690578 499 Gene3D G3DSA:3.40.50.300 5 238 2.6E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3528 51232574ddf2445f164497f996690578 499 Gene3D G3DSA:3.40.50.300 239 327 2.0E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3528 51232574ddf2445f164497f996690578 499 Gene3D G3DSA:3.40.50.300 400 475 2.0E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3528 51232574ddf2445f164497f996690578 499 PANTHER PTHR11070 3 475 2.1E-39 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 Pfam PF07729 FCD domain 74 202 2.8E-25 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 Gene3D G3DSA:1.10.10.10 2 64 1.2E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 PANTHER PTHR11751:SF436 3 90 8.8E-15 T 19-04-2016 AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 SUPERFAMILY SSF48008 72 209 7.85E-19 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 SMART SM00345 6 64 4.0E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 Gene3D G3DSA:1.20.120.530 68 211 1.3E-27 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 SMART SM00895 74 203 2.6E-17 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 SUPERFAMILY SSF46785 2 68 1.87E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 PANTHER PTHR11751 3 90 8.8E-15 T 19-04-2016 AMED_3500 2f0c27dbb972556c2cc0fc128335c822 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 64 2.2E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2663 342146301599407bd39a1ec59633a184 123 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMED_2663 342146301599407bd39a1ec59633a184 123 PIRSF PIRSF000077 1 104 2.4E-27 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_2663 342146301599407bd39a1ec59633a184 123 PANTHER PTHR10438 4 108 7.6E-39 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_2663 342146301599407bd39a1ec59633a184 123 Gene3D G3DSA:3.40.30.10 3 102 2.4E-33 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2663 342146301599407bd39a1ec59633a184 123 PANTHER PTHR10438:SF266 4 108 7.6E-39 T 19-04-2016 AMED_2663 342146301599407bd39a1ec59633a184 123 Pfam PF00085 Thioredoxin 3 102 2.9E-28 T 19-04-2016 IPR013766 Thioredoxin domain GO:0045454 AMED_2663 342146301599407bd39a1ec59633a184 123 SUPERFAMILY SSF52833 3 103 5.79E-34 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2663 342146301599407bd39a1ec59633a184 123 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 8.9E-29 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMED_2663 342146301599407bd39a1ec59633a184 123 PRINTS PR00421 Thioredoxin family signature 21 29 1.5E-7 T 19-04-2016 AMED_2663 342146301599407bd39a1ec59633a184 123 PRINTS PR00421 Thioredoxin family signature 29 38 1.5E-7 T 19-04-2016 AMED_2663 342146301599407bd39a1ec59633a184 123 PRINTS PR00421 Thioredoxin family signature 68 79 1.5E-7 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Gene3D G3DSA:2.30.38.10 358 431 6.0E-17 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Gene3D G3DSA:3.30.300.30 433 540 1.6E-14 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Gene3D G3DSA:3.40.50.980 169 328 4.1E-28 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Gene3D G3DSA:3.40.50.980 31 168 1.9E-23 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 SUPERFAMILY SSF56801 24 543 4.19E-99 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 PANTHER PTHR22754 18 541 7.3E-153 T 19-04-2016 AMED_4179 fed6fb062a0bf885e01f2ce5b76cdf7a 546 Pfam PF00501 AMP-binding enzyme 42 441 5.5E-70 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:2.40.50.140 3 105 1.0E-35 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF55681 416 583 3.32E-100 T 19-04-2016 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF55681 113 292 3.32E-100 T 19-04-2016 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 3.3E-25 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 3.3E-25 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 3.3E-25 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 3.3E-25 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PANTHER PTHR22594:SF5 448 571 1.5E-239 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PANTHER PTHR22594:SF5 1 297 1.5E-239 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Pfam PF02938 GAD domain 313 393 3.9E-13 T 19-04-2016 IPR029351 GAD domain AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:3.30.1360.30 277 405 8.5E-43 T 19-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 3 581 1.7E-208 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF50249 2 104 6.67E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:3.30.930.10 406 584 1.0E-106 T 19-04-2016 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Gene3D G3DSA:3.30.930.10 136 276 1.0E-106 T 19-04-2016 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 SUPERFAMILY SSF55261 289 411 2.83E-33 T 19-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PANTHER PTHR22594:SF5 361 427 1.5E-239 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 2 563 35.059 T 19-04-2016 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PANTHER PTHR22594 448 571 1.5E-239 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PANTHER PTHR22594 361 427 1.5E-239 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 PANTHER PTHR22594 1 297 1.5E-239 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 557 1.1E-98 T 19-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_2701 c0ad8d571a4aa9bfcf8a99dd9c3572d2 591 Pfam PF01336 OB-fold nucleic acid binding domain 19 101 5.0E-16 T 19-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMED_4049 7fda8acf45181d05042111a213980a73 500 Gene3D G3DSA:2.115.10.20 303 437 3.2E-5 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_4049 7fda8acf45181d05042111a213980a73 500 SUPERFAMILY SSF75005 238 477 1.11E-7 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_2836 f00061c6b9e7010c2d34c89ced8bdfd3 248 Pfam PF13803 Domain of unknown function (DUF4184) 1 225 8.5E-41 T 19-04-2016 IPR025238 Protein of unknown function DUF4184 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1477 1516 5.9E-7 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1398 1432 3.6E-6 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1441 1474 7.8E-4 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1519 1559 1.8E-5 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1174 1207 0.0011 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1214 1241 9.3E-4 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1562 1596 1.0E-6 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1294 1328 2.3E-5 T 19-04-2016 IPR006530 YD repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 Gene3D G3DSA:1.10.530.10 465 597 7.7E-5 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 PANTHER PTHR32305:SF6 1324 1362 2.0E-39 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 PANTHER PTHR32305:SF6 1164 1258 2.0E-39 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 PANTHER PTHR32305:SF6 1379 1981 2.0E-39 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 PANTHER PTHR32305 1164 1258 2.0E-39 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 PANTHER PTHR32305 1324 1362 2.0E-39 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 PANTHER PTHR32305 1379 1981 2.0E-39 T 19-04-2016 AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 Pfam PF05593 RHS Repeat 1625 1660 8.0E-6 T 19-04-2016 IPR031325 RHS repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 Pfam PF05593 RHS Repeat 1288 1325 7.2E-5 T 19-04-2016 IPR031325 RHS repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 Pfam PF05593 RHS Repeat 1562 1598 5.8E-9 T 19-04-2016 IPR031325 RHS repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 Pfam PF05593 RHS Repeat 1477 1514 4.6E-7 T 19-04-2016 IPR031325 RHS repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 Pfam PF05593 RHS Repeat 1222 1256 9.5E-7 T 19-04-2016 IPR031325 RHS repeat AMED_5391 7800f870b7f971bda032befb74b6b5c3 2158 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1908 1981 9.8E-22 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 PIRSF PIRSF015626 2 274 7.8E-86 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 SUPERFAMILY SSF53927 4 272 5.72E-79 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 PANTHER PTHR30592 2 273 1.7E-94 T 19-04-2016 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 PANTHER PTHR30592:SF1 2 273 1.7E-94 T 19-04-2016 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 22 272 1.4E-50 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 Hamap MF_00187 Protein FdhD [fdhD]. 2 273 35.695 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 Pfam PF02634 FdhD/NarQ family 26 272 1.9E-82 T 19-04-2016 IPR003786 Protein FdhD GO:0016783 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 Gene3D G3DSA:3.10.20.10 28 120 3.4E-27 T 19-04-2016 AMED_6733 646ee77e81b3cc64e149fc8def394a3a 274 Gene3D G3DSA:3.40.140.10 136 273 3.1E-55 T 19-04-2016 AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 Gene3D G3DSA:3.40.50.300 825 947 1.9E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 SUPERFAMILY SSF52540 519 745 1.65E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 Pfam PF00176 SNF2 family N-terminal domain 551 814 2.1E-51 T 19-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 SMART SM00487 528 717 4.1E-32 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 Gene3D G3DSA:3.40.50.300 526 700 4.3E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 Pfam PF00271 Helicase conserved C-terminal domain 834 942 4.4E-12 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 SMART SM00490 858 942 5.4E-17 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 Pfam PF12419 SNF2 Helicase protein 351 487 1.2E-36 T 19-04-2016 IPR022138 Helicase SWF/SNF-related AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 SUPERFAMILY SSF52540 751 1000 2.4E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3525 df3ce549b0a242ef4116a634e04231eb 1005 PANTHER PTHR10799 520 982 1.2E-146 T 19-04-2016 AMED_2552 c8fab6cf7c1cf6a559deb693d17377a3 193 SUPERFAMILY SSF53474 4 187 7.38E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2552 c8fab6cf7c1cf6a559deb693d17377a3 193 Gene3D G3DSA:3.40.50.1820 4 187 1.7E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2552 c8fab6cf7c1cf6a559deb693d17377a3 193 PANTHER PTHR22946 4 185 3.5E-16 T 19-04-2016 AMED_2552 c8fab6cf7c1cf6a559deb693d17377a3 193 Pfam PF01738 Dienelactone hydrolase family 4 187 6.5E-18 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_3775 67b17c787228419afd3fa4598574dc76 213 PANTHER PTHR10108:SF750 40 164 4.8E-24 T 19-04-2016 AMED_3775 67b17c787228419afd3fa4598574dc76 213 Gene3D G3DSA:3.40.50.150 40 193 7.4E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3775 67b17c787228419afd3fa4598574dc76 213 PANTHER PTHR10108 40 164 4.8E-24 T 19-04-2016 AMED_3775 67b17c787228419afd3fa4598574dc76 213 SUPERFAMILY SSF53335 40 184 2.5E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3775 67b17c787228419afd3fa4598574dc76 213 Pfam PF08241 Methyltransferase domain 51 143 4.1E-19 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF48179 188 288 3.15E-29 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF51735 307 489 7.48E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 PANTHER PTHR23309 1 303 1.3E-201 T 19-04-2016 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 PANTHER PTHR23309 469 588 1.3E-201 T 19-04-2016 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF51735 4 185 3.84E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 SUPERFAMILY SSF48179 492 588 1.28E-28 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:1.10.1040.10 190 285 4.5E-32 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:1.10.1040.10 494 588 7.1E-31 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 PANTHER PTHR23309:SF24 1 303 1.3E-201 T 19-04-2016 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 PANTHER PTHR23309:SF24 469 588 1.3E-201 T 19-04-2016 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 312 489 2.0E-58 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 185 2.6E-61 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 284 2.2E-30 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 492 588 7.3E-32 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:3.40.50.720 303 493 4.6E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7745 7e440aa0c894149cd2ec571676d46c31 588 Gene3D G3DSA:3.40.50.720 3 189 3.2E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2160 074cbdafe38cc957614cca2564d9593b 316 PANTHER PTHR24320 1 310 1.3E-102 T 19-04-2016 AMED_2160 074cbdafe38cc957614cca2564d9593b 316 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 6.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2160 074cbdafe38cc957614cca2564d9593b 316 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 6.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2160 074cbdafe38cc957614cca2564d9593b 316 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 6.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2160 074cbdafe38cc957614cca2564d9593b 316 Gene3D G3DSA:3.40.50.720 14 265 1.0E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2160 074cbdafe38cc957614cca2564d9593b 316 SUPERFAMILY SSF51735 14 263 2.38E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2160 074cbdafe38cc957614cca2564d9593b 316 Pfam PF00106 short chain dehydrogenase 17 218 1.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2160 074cbdafe38cc957614cca2564d9593b 316 PANTHER PTHR24320:SF45 1 310 1.3E-102 T 19-04-2016 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 2 126 3.7E-37 T 19-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 PANTHER PTHR30266:SF2 1 129 6.8E-34 T 19-04-2016 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 2 129 3.5E-28 T 19-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 98 1.7E-7 T 19-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 79 87 1.7E-7 T 19-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 1.7E-7 T 19-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 PANTHER PTHR30266 1 129 6.8E-34 T 19-04-2016 AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 19-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site AMED_8315 ebfa4ddea682d7051c043d6f41ae1bbc 138 SUPERFAMILY SSF81330 10 123 2.09E-27 T 19-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AMED_3210 4cbefd25088eaf9c2cc78cfd0c999b31 205 PANTHER PTHR10108:SF779 7 145 2.6E-18 T 19-04-2016 AMED_3210 4cbefd25088eaf9c2cc78cfd0c999b31 205 Gene3D G3DSA:3.40.50.150 26 198 7.2E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3210 4cbefd25088eaf9c2cc78cfd0c999b31 205 PANTHER PTHR10108 7 145 2.6E-18 T 19-04-2016 AMED_3210 4cbefd25088eaf9c2cc78cfd0c999b31 205 Pfam PF13489 Methyltransferase domain 38 147 5.3E-14 T 19-04-2016 AMED_3210 4cbefd25088eaf9c2cc78cfd0c999b31 205 SUPERFAMILY SSF53335 8 163 9.43E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 SMART SM00387 342 447 3.0E-28 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 SMART SM00304 182 235 7.3E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 SUPERFAMILY SSF55874 306 443 2.49E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 Gene3D G3DSA:1.10.287.130 226 298 4.9E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 Gene3D G3DSA:3.30.565.10 306 442 3.2E-30 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 344 441 5.6E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 PANTHER PTHR24423 176 441 1.0E-58 T 19-04-2016 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 PANTHER PTHR24423 3 9 1.0E-58 T 19-04-2016 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 SMART SM00388 236 303 4.5E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 Pfam PF00672 HAMP domain 164 231 2.2E-18 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 1.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 1.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 SUPERFAMILY SSF47384 219 298 9.42E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 SUPERFAMILY SSF158472 182 232 9.29E-9 T 19-04-2016 AMED_3690 a9002915bb53dfcc0859a2b66a31ea0a 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 300 1.7E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0278 12b758d49446de042628c72a7a9323d9 448 Pfam PF00553 Cellulose binding domain 34 132 1.3E-25 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_0278 12b758d49446de042628c72a7a9323d9 448 Pfam PF00704 Glycosyl hydrolases family 18 170 365 1.5E-9 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_0278 12b758d49446de042628c72a7a9323d9 448 SMART SM00637 33 132 4.9E-37 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_0278 12b758d49446de042628c72a7a9323d9 448 PANTHER PTHR11177:SF203 183 419 5.8E-18 T 19-04-2016 AMED_0278 12b758d49446de042628c72a7a9323d9 448 SUPERFAMILY SSF49384 29 133 1.12E-27 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_0278 12b758d49446de042628c72a7a9323d9 448 PANTHER PTHR11177 183 419 5.8E-18 T 19-04-2016 AMED_0278 12b758d49446de042628c72a7a9323d9 448 Gene3D G3DSA:3.20.20.80 184 422 5.5E-16 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0278 12b758d49446de042628c72a7a9323d9 448 SUPERFAMILY SSF51445 167 422 5.22E-19 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0278 12b758d49446de042628c72a7a9323d9 448 Gene3D G3DSA:2.60.40.290 32 133 2.6E-32 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_0278 12b758d49446de042628c72a7a9323d9 448 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 97 110 - T 19-04-2016 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 AMED_8515 db171b760babcf84cb06924557e9d186 159 SMART SM00347 33 134 8.2E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8515 db171b760babcf84cb06924557e9d186 159 Pfam PF01047 MarR family 55 99 9.7E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8515 db171b760babcf84cb06924557e9d186 159 SUPERFAMILY SSF46785 23 147 1.42E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8515 db171b760babcf84cb06924557e9d186 159 PANTHER PTHR33164 21 159 3.0E-23 T 19-04-2016 AMED_8515 db171b760babcf84cb06924557e9d186 159 Gene3D G3DSA:1.10.10.10 25 146 1.3E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8515 db171b760babcf84cb06924557e9d186 159 PANTHER PTHR33164:SF12 21 159 3.0E-23 T 19-04-2016 AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 Gene3D G3DSA:3.10.180.10 35 145 5.0E-11 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 Gene3D G3DSA:3.10.180.10 174 331 3.8E-36 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 SUPERFAMILY SSF54593 175 331 3.95E-31 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 PANTHER PTHR13789 175 309 3.2E-25 T 19-04-2016 AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 SUPERFAMILY SSF54593 29 142 6.36E-10 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 PANTHER PTHR13789:SF237 175 309 3.2E-25 T 19-04-2016 AMED_5355 dc572bfaba0d180aaac6b5f8fc3cb851 377 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 180 302 3.9E-9 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 9.0E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 9.0E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 PANTHER PTHR30055:SF75 1 187 6.8E-20 T 19-04-2016 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 SUPERFAMILY SSF46689 8 56 2.9E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 PANTHER PTHR30055 1 187 6.8E-20 T 19-04-2016 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 Gene3D G3DSA:1.10.10.60 10 52 1.1E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 2.3E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8640 86e3c95464f4f3a9d32dd6e29d86359b 187 Gene3D G3DSA:1.10.357.10 53 183 6.7E-13 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0058 cc4246e7141b757db739bb525634bf15 243 Gene3D G3DSA:2.40.10.10 25 64 1.9E-8 T 19-04-2016 AMED_0058 cc4246e7141b757db739bb525634bf15 243 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 115 129 4.9E-10 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0058 cc4246e7141b757db739bb525634bf15 243 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 193 205 4.9E-10 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0058 cc4246e7141b757db739bb525634bf15 243 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 58 73 4.9E-10 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_0058 cc4246e7141b757db739bb525634bf15 243 Gene3D G3DSA:2.40.10.10 128 230 1.2E-11 T 19-04-2016 AMED_0058 cc4246e7141b757db739bb525634bf15 243 PANTHER PTHR24256 56 172 3.0E-13 T 19-04-2016 AMED_0058 cc4246e7141b757db739bb525634bf15 243 Gene3D G3DSA:2.40.10.10 65 127 1.3E-12 T 19-04-2016 AMED_0058 cc4246e7141b757db739bb525634bf15 243 SUPERFAMILY SSF50494 15 223 3.83E-32 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_0058 cc4246e7141b757db739bb525634bf15 243 SMART SM00020 22 234 1.3E-7 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_0058 cc4246e7141b757db739bb525634bf15 243 Pfam PF00089 Trypsin 26 237 1.9E-21 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 Gene3D G3DSA:3.40.50.300 3 203 3.6E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 Pfam PF13500 AAA domain 4 201 2.0E-31 T 19-04-2016 AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 PANTHER PTHR21343 2 222 1.1E-49 T 19-04-2016 AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 PIRSF PIRSF006755 1 217 2.9E-34 T 19-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 220 22.822 T 19-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 SUPERFAMILY SSF52540 4 202 1.7E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 PANTHER PTHR21343:SF0 2 222 1.1E-49 T 19-04-2016 AMED_2217 377e68e138a4a962bdba8b2f92de287e 241 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 170 2.1E-29 T 19-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 PANTHER PTHR33164 20 146 2.7E-23 T 19-04-2016 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 PANTHER PTHR33164:SF16 20 146 2.7E-23 T 19-04-2016 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 1.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 1.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 127 147 1.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 1.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 Pfam PF01047 MarR family 49 101 1.0E-14 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 SUPERFAMILY SSF46785 13 146 5.66E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 Gene3D G3DSA:1.10.10.10 16 146 3.6E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4020 094cb5072f5ee2d8201c6a6a028b7071 153 SMART SM00347 37 137 5.6E-23 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 SUPERFAMILY SSF56059 19 262 1.88E-58 T 19-04-2016 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.470.20 201 250 3.1E-13 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.470.20 144 190 9.3E-12 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 PANTHER PTHR22931:SF7 76 307 1.9E-76 T 19-04-2016 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 PANTHER PTHR22931 76 307 1.9E-76 T 19-04-2016 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 PANTHER PTHR22931:SF7 691 781 1.9E-76 T 19-04-2016 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 PANTHER PTHR22931 691 781 1.9E-76 T 19-04-2016 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 SUPERFAMILY SSF52009 673 780 2.09E-28 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 57 189 8.4E-32 T 19-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 201 250 1.8E-7 T 19-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Pfam PF00391 PEP-utilising enzyme, mobile domain 706 777 5.2E-22 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.1490.20 59 143 2.4E-19 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.30.1490.20 20 52 7.2E-5 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_5423 9ce29eaad3d3e5b54f1722650e705264 785 Gene3D G3DSA:3.50.30.10 674 779 4.5E-27 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMED_1037 9b60e99f0363ad137b394db249917a28 714 Gene3D G3DSA:2.60.120.260 603 713 9.1E-16 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1037 9b60e99f0363ad137b394db249917a28 714 Gene3D G3DSA:3.10.170.10 172 313 6.3E-26 T 19-04-2016 IPR013856 Peptidase M4 domain GO:0004222 AMED_1037 9b60e99f0363ad137b394db249917a28 714 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 320 482 2.0E-34 T 19-04-2016 IPR001570 Peptidase M4, C-terminal GO:0004222 AMED_1037 9b60e99f0363ad137b394db249917a28 714 Pfam PF03413 Peptidase propeptide and YPEB domain 85 150 5.9E-6 T 19-04-2016 IPR025711 PepSY domain AMED_1037 9b60e99f0363ad137b394db249917a28 714 SUPERFAMILY SSF49785 611 714 5.95E-20 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1037 9b60e99f0363ad137b394db249917a28 714 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 174 310 2.0E-27 T 19-04-2016 IPR013856 Peptidase M4 domain GO:0004222 AMED_1037 9b60e99f0363ad137b394db249917a28 714 Pfam PF01483 Proprotein convertase P-domain 635 713 8.5E-18 T 19-04-2016 IPR002884 Proprotein convertase, P GO:0004252|GO:0006508 AMED_1037 9b60e99f0363ad137b394db249917a28 714 Gene3D G3DSA:1.10.390.10 320 482 4.4E-40 T 19-04-2016 AMED_1037 9b60e99f0363ad137b394db249917a28 714 PANTHER PTHR33794 42 490 2.3E-59 T 19-04-2016 AMED_1037 9b60e99f0363ad137b394db249917a28 714 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 267 287 3.0E-6 T 19-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AMED_1037 9b60e99f0363ad137b394db249917a28 714 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 388 404 3.0E-6 T 19-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AMED_1037 9b60e99f0363ad137b394db249917a28 714 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 323 334 3.0E-6 T 19-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 AMED_1037 9b60e99f0363ad137b394db249917a28 714 SUPERFAMILY SSF55486 171 482 1.83E-59 T 19-04-2016 AMED_1037 9b60e99f0363ad137b394db249917a28 714 PANTHER PTHR33794:SF2 42 490 2.3E-59 T 19-04-2016 AMED_3726 a8d92169126677b1ec8a8a8a1f56aaee 331 Gene3D G3DSA:3.40.50.720 276 328 1.0E-9 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3726 a8d92169126677b1ec8a8a8a1f56aaee 331 SUPERFAMILY SSF51735 275 328 6.35E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7161 19349e59d54d141aeccf10d044487420 494 Pfam PF07729 FCD domain 367 487 2.2E-11 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 Pfam PF07729 FCD domain 116 240 3.9E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.10.10.10 15 84 1.8E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7161 19349e59d54d141aeccf10d044487420 494 SMART SM00345 277 338 5.9E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7161 19349e59d54d141aeccf10d044487420 494 SMART SM00345 30 91 3.2E-4 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7161 19349e59d54d141aeccf10d044487420 494 SMART SM00895 363 488 4.6E-8 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 SMART SM00895 116 241 5.2E-11 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF46785 270 342 2.56E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7161 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.20.120.530 362 488 6.3E-14 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.20.120.530 114 249 1.6E-17 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF46785 25 95 3.0E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7161 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF48008 113 247 2.62E-19 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 SUPERFAMILY SSF48008 362 489 4.18E-14 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7161 19349e59d54d141aeccf10d044487420 494 PANTHER PTHR11751 29 98 3.7E-14 T 19-04-2016 AMED_7161 19349e59d54d141aeccf10d044487420 494 PANTHER PTHR11751 114 132 3.7E-14 T 19-04-2016 AMED_7161 19349e59d54d141aeccf10d044487420 494 Gene3D G3DSA:1.10.10.10 270 345 1.8E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7161 19349e59d54d141aeccf10d044487420 494 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 84 7.9E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7161 19349e59d54d141aeccf10d044487420 494 Pfam PF00392 Bacterial regulatory proteins, gntR family 274 333 1.1E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3442 557b609c9ba0f47e00fd7e8bd3724180 129 Pfam PF12680 SnoaL-like domain 4 98 8.9E-11 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3442 557b609c9ba0f47e00fd7e8bd3724180 129 Gene3D G3DSA:3.10.450.50 4 107 3.7E-16 T 19-04-2016 IPR032710 NTF2-like domain AMED_3442 557b609c9ba0f47e00fd7e8bd3724180 129 SUPERFAMILY SSF54427 3 105 2.22E-23 T 19-04-2016 IPR032710 NTF2-like domain AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 PANTHER PTHR11695 13 331 1.2E-102 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 Gene3D G3DSA:3.40.50.720 162 278 2.5E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 PANTHER PTHR11695:SF419 13 331 1.2E-102 T 19-04-2016 AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 SMART SM00829 10 330 1.4E-12 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 122 3.4E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 SUPERFAMILY SSF51735 131 303 3.52E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 Pfam PF00107 Zinc-binding dehydrogenase 169 294 3.0E-23 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 SUPERFAMILY SSF50129 8 164 8.37E-35 T 19-04-2016 IPR011032 GroES-like AMED_5180 2df4a1277e4dd42f9d4734b80b92b02c 333 Gene3D G3DSA:3.90.180.10 10 161 1.3E-36 T 19-04-2016 IPR011032 GroES-like AMED_6476 6ed59d98d460285f57b9df041deaf121 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 879 891 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 849 863 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 863 879 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 SUPERFAMILY SSF46894 842 900 2.28E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Pfam PF00196 Bacterial regulatory proteins, luxR family 848 899 2.9E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:1.10.10.10 843 899 7.5E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:1.25.40.10 347 471 2.4E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:1.25.40.10 590 627 2.4E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:3.40.50.300 11 83 4.4E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Gene3D G3DSA:3.40.50.300 128 153 4.4E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6476 6ed59d98d460285f57b9df041deaf121 909 SUPERFAMILY SSF52540 4 230 1.1E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6476 6ed59d98d460285f57b9df041deaf121 909 Pfam PF13191 AAA ATPase domain 5 157 1.2E-16 T 19-04-2016 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 SMART SM00421 846 903 1.5E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 PANTHER PTHR16305 836 861 1.5E-40 T 19-04-2016 AMED_6476 6ed59d98d460285f57b9df041deaf121 909 PANTHER PTHR16305 3 440 1.5E-40 T 19-04-2016 AMED_0455 08805680db304615dabc13b641fba41c 278 Pfam PF14257 Domain of unknown function (DUF4349) 8 261 2.7E-64 T 19-04-2016 IPR025645 Domain of unknown function DUF4349 AMED_7077 bc9016f655df1bb5ecc7288d68e38de9 301 Gene3D G3DSA:1.10.1670.10 243 283 7.2E-4 T 19-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal AMED_7077 bc9016f655df1bb5ecc7288d68e38de9 301 Gene3D G3DSA:1.10.340.30 126 241 1.2E-21 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_7077 bc9016f655df1bb5ecc7288d68e38de9 301 PANTHER PTHR10242:SF3 80 283 1.9E-27 T 19-04-2016 AMED_7077 bc9016f655df1bb5ecc7288d68e38de9 301 PANTHER PTHR10242 80 283 1.9E-27 T 19-04-2016 AMED_7077 bc9016f655df1bb5ecc7288d68e38de9 301 SUPERFAMILY SSF48150 115 289 1.92E-29 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 397 531 5.5E-23 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 SUPERFAMILY SSF52518 373 534 4.95E-31 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 Gene3D G3DSA:3.40.50.970 370 530 1.4E-31 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 SUPERFAMILY SSF52518 2 188 3.04E-35 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 204 334 2.7E-29 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 PANTHER PTHR18968 1 530 5.6E-114 T 19-04-2016 AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 SUPERFAMILY SSF52467 167 348 2.7E-34 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 181 2.9E-39 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 Gene3D G3DSA:3.40.50.1220 197 343 4.1E-39 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 Gene3D G3DSA:3.40.50.970 3 186 4.9E-44 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2621 9a99780f138a5246a5eafc2e827eeda0 547 PANTHER PTHR18968:SF116 1 530 5.6E-114 T 19-04-2016 AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 SUPERFAMILY SSF51445 32 305 1.74E-19 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 Gene3D G3DSA:2.60.120.260 449 570 5.1E-7 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 PANTHER PTHR11177 56 304 7.6E-36 T 19-04-2016 AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 SUPERFAMILY SSF49785 447 570 2.89E-12 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 Gene3D G3DSA:3.20.20.80 32 306 1.3E-10 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 Pfam PF02018 Carbohydrate binding domain 449 556 2.0E-8 T 19-04-2016 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 Pfam PF00704 Glycosyl hydrolases family 18 34 237 3.4E-13 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_4858 2ab9910673a7ed66064b1a0629896b3d 571 PANTHER PTHR11177:SF203 56 304 7.6E-36 T 19-04-2016 AMED_8144 90a5408d028e9bd254a763a5c73618de 143 SUPERFAMILY SSF51306 24 138 4.32E-28 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_8144 90a5408d028e9bd254a763a5c73618de 143 ProSitePatterns PS00501 Signal peptidases I serine active site. 29 36 - T 19-04-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 AMED_8144 90a5408d028e9bd254a763a5c73618de 143 Gene3D G3DSA:2.10.109.10 25 137 9.8E-24 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_8144 90a5408d028e9bd254a763a5c73618de 143 Pfam PF00717 Peptidase S24-like 26 86 3.5E-11 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMED_8144 90a5408d028e9bd254a763a5c73618de 143 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 20 36 8.8E-10 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_8144 90a5408d028e9bd254a763a5c73618de 143 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 103 122 8.8E-10 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_8144 90a5408d028e9bd254a763a5c73618de 143 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 74 86 8.8E-10 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_8144 90a5408d028e9bd254a763a5c73618de 143 PANTHER PTHR12383 24 140 2.1E-20 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_8144 90a5408d028e9bd254a763a5c73618de 143 Pfam PF10502 Signal peptidase, peptidase S26 100 137 1.0E-4 T 19-04-2016 IPR019533 Peptidase S26 AMED_5349 9e0baf0807d1d962083b6b6a0e5b33be 55 Gene3D G3DSA:3.50.50.60 1 50 1.0E-20 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5349 9e0baf0807d1d962083b6b6a0e5b33be 55 SUPERFAMILY SSF51905 1 51 3.45E-15 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5349 9e0baf0807d1d962083b6b6a0e5b33be 55 PANTHER PTHR11552 1 49 2.7E-22 T 19-04-2016 AMED_5349 9e0baf0807d1d962083b6b6a0e5b33be 55 PANTHER PTHR11552:SF124 1 49 2.7E-22 T 19-04-2016 AMED_5349 9e0baf0807d1d962083b6b6a0e5b33be 55 Pfam PF05199 GMC oxidoreductase 2 43 2.6E-17 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_6594 0dec89ecf82a4356d4827bc5e8dfd982 201 SUPERFAMILY SSF46689 11 94 2.39E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6594 0dec89ecf82a4356d4827bc5e8dfd982 201 PANTHER PTHR30055 6 200 1.1E-23 T 19-04-2016 AMED_6594 0dec89ecf82a4356d4827bc5e8dfd982 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 38 70 4.4E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6594 0dec89ecf82a4356d4827bc5e8dfd982 201 Gene3D G3DSA:1.10.357.10 9 193 3.2E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6594 0dec89ecf82a4356d4827bc5e8dfd982 201 SUPERFAMILY SSF48498 90 194 8.45E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4115 65d85be43851b95c4967cc29f8adeb69 346 SUPERFAMILY SSF50022 2 120 5.76E-31 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4115 65d85be43851b95c4967cc29f8adeb69 346 Pfam PF00355 Rieske [2Fe-2S] domain 8 93 8.8E-16 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4115 65d85be43851b95c4967cc29f8adeb69 346 SUPERFAMILY SSF55961 109 344 4.67E-36 T 19-04-2016 AMED_4115 65d85be43851b95c4967cc29f8adeb69 346 PANTHER PTHR21266:SF19 6 341 3.1E-94 T 19-04-2016 AMED_4115 65d85be43851b95c4967cc29f8adeb69 346 PANTHER PTHR21266 6 341 3.1E-94 T 19-04-2016 AMED_4115 65d85be43851b95c4967cc29f8adeb69 346 Gene3D G3DSA:2.102.10.10 7 122 8.0E-29 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 PANTHER PTHR13794:SF58 6 374 7.8E-88 T 19-04-2016 AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 SUPERFAMILY SSF54826 1 120 4.71E-23 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 SMART SM00922 137 239 2.4E-15 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 35 118 5.6E-9 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 SUPERFAMILY SSF51604 106 353 2.36E-51 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Gene3D G3DSA:3.30.390.10 1 121 2.1E-27 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Pfam PF13378 Enolase C-terminal domain-like 144 349 9.5E-45 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 Gene3D G3DSA:3.20.20.120 122 345 2.8E-58 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_4787 cb2b219af2b9b9b5b1ea15b4f9a70707 393 PANTHER PTHR13794 6 374 7.8E-88 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_7400 047190f0e7fff95b05b0b41a413e1eae 376 Gene3D G3DSA:3.40.50.2000 191 333 2.0E-24 T 19-04-2016 AMED_7400 047190f0e7fff95b05b0b41a413e1eae 376 SUPERFAMILY SSF53756 11 367 3.36E-67 T 19-04-2016 AMED_7400 047190f0e7fff95b05b0b41a413e1eae 376 Pfam PF13439 Glycosyltransferase Family 4 13 180 3.7E-16 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_7400 047190f0e7fff95b05b0b41a413e1eae 376 PANTHER PTHR12526 3 368 6.3E-43 T 19-04-2016 AMED_7400 047190f0e7fff95b05b0b41a413e1eae 376 Pfam PF13692 Glycosyl transferases group 1 193 331 2.0E-27 T 19-04-2016 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 Pfam PF13411 MerR HTH family regulatory protein 7 74 2.5E-18 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 SUPERFAMILY SSF46955 7 114 7.33E-27 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_8743 add999500146c945a6a5ac187d9b1d94 311 PANTHER PTHR30204 1 288 7.9E-21 T 19-04-2016 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 2.4E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 19 32 2.4E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 19 2.4E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 Gene3D G3DSA:1.10.1660.10 7 119 1.3E-29 T 19-04-2016 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 SMART SM00422 7 76 6.0E-25 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8743 add999500146c945a6a5ac187d9b1d94 311 PANTHER PTHR30204:SF18 1 288 7.9E-21 T 19-04-2016 AMED_7421 79639e99e16cce89f54e7eae857ef404 340 Gene3D G3DSA:2.60.120.360 30 95 1.9E-7 T 19-04-2016 AMED_7421 79639e99e16cce89f54e7eae857ef404 340 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 133 316 3.1E-11 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7421 79639e99e16cce89f54e7eae857ef404 340 SUPERFAMILY SSF49785 29 86 6.72E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7421 79639e99e16cce89f54e7eae857ef404 340 SUPERFAMILY SSF52266 126 338 2.33E-33 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7421 79639e99e16cce89f54e7eae857ef404 340 Gene3D G3DSA:3.40.50.1110 126 339 1.8E-46 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0331 7b32ec9d49dc7f0e201367166f0e319a 323 Pfam PF05426 Alginate lyase 89 323 7.2E-65 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_0331 7b32ec9d49dc7f0e201367166f0e319a 323 SUPERFAMILY SSF48230 82 323 1.19E-34 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_0331 7b32ec9d49dc7f0e201367166f0e319a 323 PANTHER PTHR41379:SF1 34 323 1.5E-64 T 19-04-2016 AMED_0331 7b32ec9d49dc7f0e201367166f0e319a 323 Gene3D G3DSA:1.50.10.110 72 323 5.3E-59 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_0331 7b32ec9d49dc7f0e201367166f0e319a 323 PANTHER PTHR41379 34 323 1.5E-64 T 19-04-2016 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 Pfam PF01593 Flavin containing amine oxidoreductase 11 489 5.0E-22 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 PANTHER PTHR10668:SF75 4 489 4.3E-115 T 19-04-2016 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 PANTHER PTHR10668 4 489 4.3E-115 T 19-04-2016 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 SUPERFAMILY SSF51905 452 489 3.24E-65 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 SUPERFAMILY SSF51905 4 319 3.24E-65 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 Gene3D G3DSA:3.50.50.60 436 489 1.2E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 Gene3D G3DSA:3.50.50.60 4 94 1.2E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 Gene3D G3DSA:3.50.50.60 207 304 1.2E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4079 cdcf855d5bde274cb6420b71c9e88782 503 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 492 2.5E-108 T 19-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 PANTHER PTHR24362:SF160 13 273 1.5E-72 T 19-04-2016 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 Pfam PF00069 Protein kinase domain 14 226 1.9E-46 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 132 144 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 SUPERFAMILY SSF56112 11 318 1.86E-67 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 Gene3D G3DSA:1.10.510.10 79 267 2.3E-40 T 19-04-2016 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 Gene3D G3DSA:3.30.200.20 12 78 2.9E-20 T 19-04-2016 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 20 43 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 PANTHER PTHR24362 13 273 1.5E-72 T 19-04-2016 AMED_7583 ee4bc674de92bacebe715e7bbdc9b650 575 SMART SM00220 14 276 2.1E-53 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 PANTHER PTHR10314:SF96 38 398 2.3E-178 T 19-04-2016 AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 SUPERFAMILY SSF53686 17 413 1.44E-83 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 Gene3D G3DSA:3.40.50.1100 121 204 7.9E-29 T 19-04-2016 AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 PANTHER PTHR10314 38 398 2.3E-178 T 19-04-2016 AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 Gene3D G3DSA:3.40.50.1100 205 403 1.1E-36 T 19-04-2016 AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 TIGRFAM TIGR00260 thrC: threonine synthase 67 395 8.5E-85 T 19-04-2016 IPR004450 Threonine synthase-like AMED_6687 f80ac5c721735b0df01372a6bec334c3 421 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 88 389 3.6E-67 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:3.30.70.980 140 207 6.5E-26 T 19-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 PANTHER PTHR12532:SF0 1 244 1.0E-104 T 19-04-2016 AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 SUPERFAMILY SSF75625 3 249 1.1E-88 T 19-04-2016 IPR029072 YebC-like AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 Pfam PF01709 Transcriptional regulator 5 240 1.1E-87 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:3.30.1270.10 86 139 2.2E-39 T 19-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:3.30.1270.10 215 249 2.2E-39 T 19-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 242 34.588 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 240 3.0E-97 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 Gene3D G3DSA:1.10.10.200 1 81 4.2E-31 T 19-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like AMED_5304 649338ca2e3fe0841e53cb75faf4654f 251 PANTHER PTHR12532 1 244 1.0E-104 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMED_5052 cfd86ef1dcdcda50485b352490ec3cdc 304 Pfam PF00665 Integrase core domain 144 255 1.4E-22 T 19-04-2016 IPR001584 Integrase, catalytic core GO:0015074 AMED_5052 cfd86ef1dcdcda50485b352490ec3cdc 304 SUPERFAMILY SSF53098 136 295 5.77E-33 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5052 cfd86ef1dcdcda50485b352490ec3cdc 304 Pfam PF13276 HTH-like domain 59 113 4.2E-14 T 19-04-2016 IPR025948 HTH-like domain AMED_5052 cfd86ef1dcdcda50485b352490ec3cdc 304 Gene3D G3DSA:3.30.420.10 138 293 2.5E-30 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5052 cfd86ef1dcdcda50485b352490ec3cdc 304 PANTHER PTHR32552 23 301 5.6E-41 T 19-04-2016 AMED_6141 8878b2f4d2b49c8beef6f6f08af03724 256 Gene3D G3DSA:3.40.50.1820 100 255 1.9E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6141 8878b2f4d2b49c8beef6f6f08af03724 256 Pfam PF00326 Prolyl oligopeptidase family 104 220 2.2E-6 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_6141 8878b2f4d2b49c8beef6f6f08af03724 256 SUPERFAMILY SSF53474 94 255 9.39E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 TIGRFAM TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein 23 228 7.4E-120 T 19-04-2016 IPR006351 3-amino-5-hydroxybenzoic acid synthesis-related AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 140 156 2.8E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 109 122 2.8E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 158 178 2.8E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 20 31 2.8E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 23 195 5.9E-31 T 19-04-2016 IPR023214 HAD-like domain AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 Gene3D G3DSA:3.40.50.1000 21 34 2.1E-37 T 19-04-2016 IPR023214 HAD-like domain AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 Gene3D G3DSA:3.40.50.1000 100 226 2.1E-37 T 19-04-2016 IPR023214 HAD-like domain AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 191 2.3E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 109 190 1.5E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 SUPERFAMILY SSF56784 22 226 2.85E-50 T 19-04-2016 IPR023214 HAD-like domain AMED_0629 eb3c3695d65097a7a9c64b243bb0089a 232 PANTHER PTHR18901 22 230 5.7E-42 T 19-04-2016 AMED_6460 6ced9e096bb424add30507d87b5b1c34 156 Gene3D G3DSA:1.10.101.10 101 149 4.4E-11 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_6460 6ced9e096bb424add30507d87b5b1c34 156 SUPERFAMILY SSF47090 103 145 7.14E-9 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_6460 6ced9e096bb424add30507d87b5b1c34 156 Pfam PF01471 Putative peptidoglycan binding domain 77 142 9.3E-8 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_7317 f19c3931f86cccb09f14c3b92b113aef 243 SUPERFAMILY SSF49785 143 228 1.96E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7317 f19c3931f86cccb09f14c3b92b113aef 243 Pfam PF08305 NPCBM/NEW2 domain 124 233 1.5E-7 T 19-04-2016 IPR013222 Glycosyl hydrolase family 98, putative carbohydrate-binding module AMED_0764 5af7cf0b75885df3e4c97ef59650f4e0 106 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 14 103 15.445 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_0764 5af7cf0b75885df3e4c97ef59650f4e0 106 PANTHER PTHR38839:SF1 1 95 3.7E-48 T 19-04-2016 AMED_0764 5af7cf0b75885df3e4c97ef59650f4e0 106 PANTHER PTHR38839 1 95 3.7E-48 T 19-04-2016 AMED_0764 5af7cf0b75885df3e4c97ef59650f4e0 106 Pfam PF02467 Transcription factor WhiB 23 93 1.1E-22 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_6608 8995543af9f72286376c8050ee9043b3 121 PANTHER PTHR33154 27 117 2.2E-23 T 19-04-2016 AMED_6608 8995543af9f72286376c8050ee9043b3 121 Pfam PF01022 Bacterial regulatory protein, arsR family 45 89 4.1E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6608 8995543af9f72286376c8050ee9043b3 121 SMART SM00418 37 115 3.7E-26 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6608 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 86 101 7.3E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6608 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 7.3E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6608 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 69 7.3E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6608 8995543af9f72286376c8050ee9043b3 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 7.3E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6608 8995543af9f72286376c8050ee9043b3 121 SUPERFAMILY SSF46785 26 110 3.53E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6608 8995543af9f72286376c8050ee9043b3 121 Gene3D G3DSA:1.10.10.10 22 119 1.3E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 SUPERFAMILY SSF63418 3 82 8.37E-19 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 SUPERFAMILY SSF53623 127 335 2.62E-52 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Pfam PF01225 Mur ligase family, catalytic domain 30 80 5.3E-10 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Gene3D G3DSA:3.90.190.20 340 484 5.0E-42 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 PANTHER PTHR23135 13 497 2.5E-157 T 19-04-2016 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Pfam PF08245 Mur ligase middle domain 132 319 2.4E-42 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Gene3D G3DSA:3.40.1190.10 107 336 8.7E-69 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Pfam PF02875 Mur ligase family, glutamate ligase domain 342 429 5.4E-20 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 483 31.778 T 19-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 SUPERFAMILY SSF53244 342 482 4.21E-33 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 Gene3D G3DSA:3.40.1390.10 4 80 1.9E-23 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 32 482 2.1E-124 T 19-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6255 ca1ba769b801e69cde8dc22932abe3a4 500 PANTHER PTHR23135:SF3 13 497 2.5E-157 T 19-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7960 0e86f36292c4405b62f22dc4d69f4442 468 Gene3D G3DSA:3.40.50.150 94 308 6.3E-56 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7960 0e86f36292c4405b62f22dc4d69f4442 468 PANTHER PTHR23290 92 280 1.3E-18 T 19-04-2016 AMED_7960 0e86f36292c4405b62f22dc4d69f4442 468 PANTHER PTHR23290:SF2 92 280 1.3E-18 T 19-04-2016 AMED_7960 0e86f36292c4405b62f22dc4d69f4442 468 Pfam PF01861 Protein of unknown function DUF43 94 279 4.8E-28 T 19-04-2016 IPR002723 N(4)-bis(aminopropyl)spermidine synthase, C-terminal AMED_7960 0e86f36292c4405b62f22dc4d69f4442 468 SUPERFAMILY SSF53335 151 273 2.91E-10 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7960 0e86f36292c4405b62f22dc4d69f4442 468 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 206 212 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 PANTHER PTHR11615:SF119 1 678 6.9E-181 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Pfam PF00384 Molybdopterin oxidoreductase 52 472 8.5E-70 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Pfam PF01568 Molydopterin dinucleotide binding domain 566 672 3.5E-28 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 SUPERFAMILY SSF53706 2 566 1.05E-165 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 PANTHER PTHR11615 1 678 6.9E-181 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:3.40.50.740 359 514 1.4E-66 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:3.40.50.740 52 124 1.4E-66 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:3.40.50.740 301 324 1.4E-66 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 SMART SM00926 1 49 1.8E-9 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:3.40.228.10 126 300 2.0E-49 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:2.20.25.90 2 50 8.4E-14 T 19-04-2016 AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 SUPERFAMILY SSF50692 526 675 9.04E-45 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_1121 32a03ed8e61d990eb88d83ea42f7b466 682 Gene3D G3DSA:2.40.40.20 518 675 5.9E-51 T 19-04-2016 AMED_4982 9d7cc192123d64d2a940f06732cf5485 300 SUPERFAMILY SSF51735 1 295 3.21E-84 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4982 9d7cc192123d64d2a940f06732cf5485 300 Gene3D G3DSA:3.40.50.720 1 181 2.2E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4982 9d7cc192123d64d2a940f06732cf5485 300 Pfam PF01370 NAD dependent epimerase/dehydratase family 1 222 2.0E-53 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4982 9d7cc192123d64d2a940f06732cf5485 300 Gene3D G3DSA:3.90.25.10 182 295 7.5E-24 T 19-04-2016 AMED_4982 9d7cc192123d64d2a940f06732cf5485 300 PANTHER PTHR10366 1 294 4.1E-76 T 19-04-2016 AMED_8607 0c6caf09fad94daa94731979fc22a4cd 126 Gene3D G3DSA:3.10.180.10 9 124 1.0E-15 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8607 0c6caf09fad94daa94731979fc22a4cd 126 SUPERFAMILY SSF54593 9 125 3.76E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2248 338007e1758903f56ec966b322a67d18 236 Gene3D G3DSA:3.40.50.2300 20 135 1.7E-20 T 19-04-2016 AMED_2248 338007e1758903f56ec966b322a67d18 236 Gene3D G3DSA:1.10.10.10 136 225 1.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2248 338007e1758903f56ec966b322a67d18 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 207 4.0E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2248 338007e1758903f56ec966b322a67d18 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 195 4.0E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2248 338007e1758903f56ec966b322a67d18 236 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 179 4.0E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2248 338007e1758903f56ec966b322a67d18 236 PANTHER PTHR26402 21 225 4.3E-34 T 19-04-2016 AMED_2248 338007e1758903f56ec966b322a67d18 236 SMART SM00448 21 131 1.0E-14 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2248 338007e1758903f56ec966b322a67d18 236 SUPERFAMILY SSF46894 156 225 2.07E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2248 338007e1758903f56ec966b322a67d18 236 SMART SM00421 162 219 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2248 338007e1758903f56ec966b322a67d18 236 Pfam PF00072 Response regulator receiver domain 23 131 1.3E-14 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2248 338007e1758903f56ec966b322a67d18 236 SUPERFAMILY SSF52172 21 147 8.25E-20 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2248 338007e1758903f56ec966b322a67d18 236 Pfam PF00196 Bacterial regulatory proteins, luxR family 164 212 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2248 338007e1758903f56ec966b322a67d18 236 PANTHER PTHR26402:SF151 21 225 4.3E-34 T 19-04-2016 AMED_4416 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 SUPERFAMILY SSF56112 19 258 2.27E-39 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_4416 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 Pfam PF01636 Phosphotransferase enzyme family 37 257 1.3E-31 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_4416 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 PANTHER PTHR21310 3 282 7.2E-50 T 19-04-2016 AMED_4416 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 PANTHER PTHR21310:SF14 3 282 7.2E-50 T 19-04-2016 AMED_4416 84cc7c6fe9fa0aab779d4b9e3528c0fa 292 Gene3D G3DSA:3.90.1200.10 107 258 3.5E-28 T 19-04-2016 AMED_0242 e39bdb143a7544497758445c982287c0 399 PANTHER PTHR11601 8 398 9.6E-83 T 19-04-2016 AMED_0242 e39bdb143a7544497758445c982287c0 399 Pfam PF00266 Aminotransferase class-V 21 391 3.0E-35 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_0242 e39bdb143a7544497758445c982287c0 399 Gene3D G3DSA:3.90.1150.10 262 398 4.3E-14 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0242 e39bdb143a7544497758445c982287c0 399 Gene3D G3DSA:3.40.640.10 31 261 2.0E-42 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0242 e39bdb143a7544497758445c982287c0 399 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 3 395 5.5E-118 T 19-04-2016 IPR011340 Cysteine desulfurase-related AMED_0242 e39bdb143a7544497758445c982287c0 399 PANTHER PTHR11601:SF22 8 398 9.6E-83 T 19-04-2016 AMED_0242 e39bdb143a7544497758445c982287c0 399 SUPERFAMILY SSF53383 3 398 1.02E-61 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6396 4a53da15df1dae706773afcf34f464f3 399 Gene3D G3DSA:3.40.640.10 114 256 1.8E-20 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_6396 4a53da15df1dae706773afcf34f464f3 399 Gene3D G3DSA:3.90.1150.10 257 397 1.1E-39 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_6396 4a53da15df1dae706773afcf34f464f3 399 PANTHER PTHR14084 5 397 1.0E-90 T 19-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 AMED_6396 4a53da15df1dae706773afcf34f464f3 399 SUPERFAMILY SSF53383 12 397 2.24E-71 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6396 4a53da15df1dae706773afcf34f464f3 399 Pfam PF00266 Aminotransferase class-V 117 364 2.3E-16 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_6396 4a53da15df1dae706773afcf34f464f3 399 PIRSF PIRSF038800 2 398 1.9E-130 T 19-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 213 3.3E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 PANTHER PTHR10909:SF229 2 384 9.6E-141 T 19-04-2016 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 PANTHER PTHR10909 2 384 9.6E-141 T 19-04-2016 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 122 6.0E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 380 4.8E-33 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 Gene3D G3DSA:2.40.110.10 126 220 1.0E-30 T 19-04-2016 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 Gene3D G3DSA:1.20.140.10 221 384 9.7E-34 T 19-04-2016 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 Gene3D G3DSA:1.10.540.10 4 122 3.0E-28 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 SUPERFAMILY SSF56645 4 244 9.69E-63 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2422 fb53d7b4c278a86eb047147635efaf99 387 SUPERFAMILY SSF47203 231 384 1.06E-24 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_0514 3de2623e99be9f424013517acb798555 359 SUPERFAMILY SSF53756 2 350 4.85E-66 T 19-04-2016 AMED_0514 3de2623e99be9f424013517acb798555 359 Pfam PF13439 Glycosyltransferase Family 4 1 165 5.8E-24 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_0514 3de2623e99be9f424013517acb798555 359 Gene3D G3DSA:3.40.50.2000 154 330 3.5E-20 T 19-04-2016 AMED_0514 3de2623e99be9f424013517acb798555 359 PANTHER PTHR12526 1 352 3.1E-62 T 19-04-2016 AMED_0514 3de2623e99be9f424013517acb798555 359 Pfam PF00534 Glycosyl transferases group 1 179 330 4.6E-23 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_0514 3de2623e99be9f424013517acb798555 359 Gene3D G3DSA:3.40.50.2000 5 117 7.1E-6 T 19-04-2016 AMED_0514 3de2623e99be9f424013517acb798555 359 PANTHER PTHR12526:SF363 1 352 3.1E-62 T 19-04-2016 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 SUPERFAMILY SSF88659 171 251 5.05E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 Gene3D G3DSA:1.10.10.10 189 252 2.1E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 PANTHER PTHR30385:SF4 17 254 3.8E-78 T 19-04-2016 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 Pfam PF04539 Sigma-70 region 3 119 162 1.9E-8 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 Gene3D G3DSA:1.10.10.10 107 161 1.3E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 SUPERFAMILY SSF88946 18 107 5.1E-26 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 35 248 5.6E-37 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 Pfam PF04545 Sigma-70, region 4 200 247 1.5E-15 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 SUPERFAMILY SSF88659 106 160 6.98E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 PANTHER PTHR30385 17 254 3.8E-78 T 19-04-2016 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 Gene3D G3DSA:1.10.601.10 30 106 4.0E-18 T 19-04-2016 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 Pfam PF04542 Sigma-70 region 2 38 107 2.2E-17 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 32 249 2.7E-75 T 19-04-2016 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 203 215 3.3E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 62 75 3.3E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 220 235 3.3E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0289 3c6bc08b558208ed771f24f36c59fa68 259 PRINTS PR00046 Major sigma-70 factor signature 235 246 3.3E-9 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2264 2d244534196485bda54a3594cd5ccea1 153 Pfam PF00293 NUDIX domain 19 133 2.3E-9 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_2264 2d244534196485bda54a3594cd5ccea1 153 Gene3D G3DSA:3.90.79.10 10 149 1.1E-21 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_2264 2d244534196485bda54a3594cd5ccea1 153 ProSitePatterns PS00893 Nudix box signature. 50 71 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_2264 2d244534196485bda54a3594cd5ccea1 153 SUPERFAMILY SSF55811 11 135 7.99E-19 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7710 87c63d0d9dbb59aede5e1a5e1368782c 143 SUPERFAMILY SSF56281 10 100 5.24E-15 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7710 87c63d0d9dbb59aede5e1a5e1368782c 143 Gene3D G3DSA:3.60.15.10 10 98 2.4E-14 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7710 87c63d0d9dbb59aede5e1a5e1368782c 143 Pfam PF00753 Metallo-beta-lactamase superfamily 10 100 1.4E-9 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1656 d7199ae009e86549819207ccb722a726 294 SMART SM00563 91 203 1.1E-22 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_1656 d7199ae009e86549819207ccb722a726 294 PANTHER PTHR10434 5 203 2.7E-39 T 19-04-2016 AMED_1656 d7199ae009e86549819207ccb722a726 294 SUPERFAMILY SSF69593 43 203 1.57E-17 T 19-04-2016 AMED_1656 d7199ae009e86549819207ccb722a726 294 PANTHER PTHR10434:SF8 5 203 2.7E-39 T 19-04-2016 AMED_1656 d7199ae009e86549819207ccb722a726 294 Gene3D G3DSA:3.40.1130.10 86 186 2.3E-5 T 19-04-2016 AMED_1656 d7199ae009e86549819207ccb722a726 294 Pfam PF01553 Acyltransferase 86 200 4.0E-18 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_1611 4b74228cb994866fc651bb8392afa8d4 181 SUPERFAMILY SSF51182 30 162 3.34E-28 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_1611 4b74228cb994866fc651bb8392afa8d4 181 Pfam PF05995 Cysteine dioxygenase type I 55 162 1.4E-17 T 19-04-2016 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|UniPathway: UPA00012 AMED_1611 4b74228cb994866fc651bb8392afa8d4 181 Gene3D G3DSA:2.60.120.10 57 159 3.6E-15 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 PANTHER PTHR23029 1 190 3.0E-62 T 19-04-2016 AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 SMART SM00855 4 151 5.1E-22 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 PANTHER PTHR23029:SF54 1 190 3.0E-62 T 19-04-2016 AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 189 1.5E-47 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 PIRSF PIRSF000709 2 166 1.8E-7 T 19-04-2016 AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 SUPERFAMILY SSF53254 4 190 7.46E-49 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_7967 c79d661d8a66ba67a50fbbbf781ea6c2 195 Gene3D G3DSA:3.40.50.1240 3 189 1.0E-48 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 Gene3D G3DSA:1.10.10.10 14 148 5.5E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 PANTHER PTHR33164:SF10 42 159 5.6E-35 T 19-04-2016 AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 SUPERFAMILY SSF46785 13 148 3.63E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 Pfam PF01047 MarR family 42 100 7.1E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 PANTHER PTHR33164 42 159 5.6E-35 T 19-04-2016 AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 9.7E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 9.7E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 9.7E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5731 f92e39ef1c0baca6c417c69041f13511 164 SMART SM00347 35 135 4.0E-20 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 PANTHER PTHR10909 298 338 1.4E-96 T 19-04-2016 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 PANTHER PTHR10909 21 282 1.4E-96 T 19-04-2016 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 Gene3D G3DSA:1.20.140.10 186 364 2.1E-43 T 19-04-2016 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 SUPERFAMILY SSF56645 5 191 5.5E-25 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 PANTHER PTHR10909:SF316 298 338 1.4E-96 T 19-04-2016 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 Gene3D G3DSA:2.40.110.10 106 185 6.5E-24 T 19-04-2016 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 Gene3D G3DSA:1.10.540.10 2 101 3.4E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 PIRSF PIRSF016578 1 369 1.1E-110 T 19-04-2016 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 216 348 6.9E-34 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_0843 284aed7ed1224e27974ccab35dc71889 369 SUPERFAMILY SSF47203 208 363 4.99E-20 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_0843 284aed7ed1224e27974ccab35dc71889 369 PANTHER PTHR10909:SF316 21 282 1.4E-96 T 19-04-2016 AMED_4342 69cad8ac017d5b11947d581503739f65 315 Pfam PF13576 Pentapeptide repeats (9 copies) 146 194 1.9E-8 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 221 339 2.0E-21 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 35 149 3.5E-16 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 SUPERFAMILY SSF52540 35 136 3.88E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 SUPERFAMILY SSF52540 246 356 3.88E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 PANTHER PTHR40396 176 405 3.3E-23 T 19-04-2016 AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 Gene3D G3DSA:3.40.50.300 208 351 5.5E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6290 b7eb872a3afccb59bb03d125bbc210ed 405 Gene3D G3DSA:3.40.50.300 2 171 5.5E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 138 153 6.5E-33 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 264 279 6.5E-33 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 314 6.5E-33 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 314 330 6.5E-33 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 6.5E-33 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 SUPERFAMILY SSF51905 2 159 2.04E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 SUPERFAMILY SSF51905 260 343 2.04E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 Pfam PF01494 FAD binding domain 3 328 4.7E-64 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PANTHER PTHR13789:SF90 2 349 2.1E-73 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 PANTHER PTHR13789 2 349 2.1E-73 T 19-04-2016 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 Gene3D G3DSA:3.50.50.60 2 164 3.3E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1783 9565fa5280050cb7d7a98a9e82d06b3a 460 Gene3D G3DSA:3.50.50.60 252 330 3.3E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2928 30a9d2939268f74bd209e242205fedfb 162 SMART SM00347 35 139 6.1E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2928 30a9d2939268f74bd209e242205fedfb 162 Gene3D G3DSA:1.10.10.10 8 137 2.1E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2928 30a9d2939268f74bd209e242205fedfb 162 SUPERFAMILY SSF46785 33 137 5.64E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2928 30a9d2939268f74bd209e242205fedfb 162 PANTHER PTHR33164 14 129 6.8E-16 T 19-04-2016 AMED_2928 30a9d2939268f74bd209e242205fedfb 162 Pfam PF12802 MarR family 41 101 1.0E-7 T 19-04-2016 AMED_2928 30a9d2939268f74bd209e242205fedfb 162 PANTHER PTHR33164:SF1 14 129 6.8E-16 T 19-04-2016 AMED_0776 50f91cf70b6bf79c88b49c334670ccd6 235 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 15 150 3.8E-26 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_0776 50f91cf70b6bf79c88b49c334670ccd6 235 SUPERFAMILY SSF55718 174 234 1.65E-8 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_0776 50f91cf70b6bf79c88b49c334670ccd6 235 SUPERFAMILY SSF109854 8 157 8.42E-39 T 19-04-2016 AMED_0776 50f91cf70b6bf79c88b49c334670ccd6 235 Gene3D G3DSA:1.20.120.450 7 152 1.2E-12 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_0776 50f91cf70b6bf79c88b49c334670ccd6 235 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 21 218 2.6E-29 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_5044 542f084622b2299e4c0852ea1424012f 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 316 1.3E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5044 542f084622b2299e4c0852ea1424012f 321 PANTHER PTHR30193 14 320 1.7E-89 T 19-04-2016 AMED_5044 542f084622b2299e4c0852ea1424012f 321 SUPERFAMILY SSF161098 81 307 9.03E-59 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5044 542f084622b2299e4c0852ea1424012f 321 Gene3D G3DSA:1.10.3720.10 87 317 4.9E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5044 542f084622b2299e4c0852ea1424012f 321 PANTHER PTHR30193:SF15 14 320 1.7E-89 T 19-04-2016 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 SUPERFAMILY SSF47384 213 295 1.26E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 SUPERFAMILY SSF55874 284 451 4.85E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 1.2E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 1.2E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 1.2E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 PANTHER PTHR24423 169 463 1.4E-61 T 19-04-2016 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 PANTHER PTHR24423 3 13 1.4E-61 T 19-04-2016 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 Pfam PF00672 HAMP domain 156 222 9.8E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 451 2.6E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 SUPERFAMILY SSF158472 175 222 9.42E-5 T 19-04-2016 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 Gene3D G3DSA:1.10.287.130 220 279 2.9E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 SMART SM00388 228 294 9.9E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 293 9.8E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 SMART SM00304 175 227 3.3E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 SMART SM00387 340 452 8.4E-20 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6359 6d52db202c54714d7827865fa2aeed1a 465 Gene3D G3DSA:3.30.565.10 280 452 9.5E-32 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 PANTHER PTHR19328 393 605 1.3E-66 T 19-04-2016 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.60.40.10 188 276 8.0E-19 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.60.40.10 283 369 4.8E-22 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF03422 Carbohydrate binding module (family 6) 71 170 3.2E-12 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF01161 Phosphatidylethanolamine-binding protein 729 871 2.2E-21 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.60.120.260 58 178 1.2E-27 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:3.90.280.10 717 871 9.2E-30 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF49785 59 177 6.68E-25 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF50952 391 689 3.14E-30 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Gene3D G3DSA:2.120.10.30 390 712 3.4E-86 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF49265 188 370 9.79E-30 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF07995 Glucose / Sorbosone dehydrogenase 392 690 1.0E-71 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF00041 Fibronectin type III domain 192 264 1.6E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 Pfam PF00041 Fibronectin type III domain 287 357 4.5E-10 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SUPERFAMILY SSF49777 717 869 6.41E-23 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SMART SM00606 48 183 0.0092 T 19-04-2016 IPR006584 Cellulose binding, type IV GO:0030246 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SMART SM00060 285 359 5.5E-12 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_2787 ebdb1d16178321c6bcfd26ff5f80b02e 877 SMART SM00060 190 265 7.2E-11 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3057 0db8215ab7730535e989dcd91a54bcb1 145 Gene3D G3DSA:2.60.40.790 6 134 1.8E-29 T 19-04-2016 IPR008978 HSP20-like chaperone AMED_3057 0db8215ab7730535e989dcd91a54bcb1 145 PANTHER PTHR11527:SF118 6 141 1.0E-24 T 19-04-2016 AMED_3057 0db8215ab7730535e989dcd91a54bcb1 145 PANTHER PTHR11527 6 141 1.0E-24 T 19-04-2016 IPR031107 Small heat shock protein HSP20 AMED_3057 0db8215ab7730535e989dcd91a54bcb1 145 SUPERFAMILY SSF49764 7 133 4.19E-30 T 19-04-2016 IPR008978 HSP20-like chaperone AMED_3057 0db8215ab7730535e989dcd91a54bcb1 145 Pfam PF00011 Hsp20/alpha crystallin family 37 134 5.1E-20 T 19-04-2016 IPR002068 Alpha crystallin/Hsp20 domain AMED_7730 1f7aa8be57db47134056c8b091962bba 273 Pfam PF01636 Phosphotransferase enzyme family 52 240 2.7E-13 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_7730 1f7aa8be57db47134056c8b091962bba 273 SUPERFAMILY SSF56112 24 255 5.69E-25 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_7730 1f7aa8be57db47134056c8b091962bba 273 Gene3D G3DSA:3.90.1200.10 117 249 4.9E-15 T 19-04-2016 AMED_5827 6c93f6253a18425113e50e33ebb11fb2 143 Pfam PF00553 Cellulose binding domain 40 140 4.1E-32 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5827 6c93f6253a18425113e50e33ebb11fb2 143 SMART SM00637 40 140 5.2E-37 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5827 6c93f6253a18425113e50e33ebb11fb2 143 SUPERFAMILY SSF49384 38 140 1.53E-30 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5827 6c93f6253a18425113e50e33ebb11fb2 143 Gene3D G3DSA:2.60.40.290 39 141 4.0E-35 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_1539 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 Pfam PF02547 Queuosine biosynthesis protein 4 332 2.5E-75 T 19-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 AMED_1539 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 Gene3D G3DSA:3.40.1780.10 4 61 2.9E-59 T 19-04-2016 AMED_1539 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 Gene3D G3DSA:3.40.1780.10 178 333 2.9E-59 T 19-04-2016 AMED_1539 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 SUPERFAMILY SSF111337 4 333 3.53E-75 T 19-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 AMED_1539 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 PANTHER PTHR30307 2 335 1.3E-90 T 19-04-2016 AMED_1539 a6bd350c4a0b69f74dcb0b2b44b83ce4 335 PANTHER PTHR30307:SF0 2 335 1.3E-90 T 19-04-2016 AMED_6220 23025f42f74bc2bf46e955c026e7586e 286 PANTHER PTHR35010:SF1 1 282 7.8E-130 T 19-04-2016 AMED_6220 23025f42f74bc2bf46e955c026e7586e 286 SMART SM00530 13 85 3.6E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_6220 23025f42f74bc2bf46e955c026e7586e 286 Gene3D G3DSA:1.10.260.40 7 84 6.5E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6220 23025f42f74bc2bf46e955c026e7586e 286 Pfam PF13560 Helix-turn-helix domain 10 88 5.0E-15 T 19-04-2016 AMED_6220 23025f42f74bc2bf46e955c026e7586e 286 SUPERFAMILY SSF47413 31 84 7.95E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6220 23025f42f74bc2bf46e955c026e7586e 286 PANTHER PTHR35010 1 282 7.8E-130 T 19-04-2016 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 PANTHER PTHR26402:SF582 1 205 2.1E-82 T 19-04-2016 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 Pfam PF00072 Response regulator receiver domain 2 105 3.0E-17 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 192 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 Gene3D G3DSA:1.10.10.10 149 208 4.2E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 Gene3D G3DSA:3.40.50.2300 2 148 9.2E-26 T 19-04-2016 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 SUPERFAMILY SSF46894 133 196 8.16E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 PANTHER PTHR26402 1 205 2.1E-82 T 19-04-2016 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 SMART SM00448 1 117 5.7E-8 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 SMART SM00421 144 201 1.8E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 9.8E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 9.8E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 9.8E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1258 60a38d141526e7bba95a89ff65940a7d 210 SUPERFAMILY SSF52172 2 129 4.84E-19 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 PANTHER PTHR12143:SF22 16 430 9.1E-105 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 PANTHER PTHR12143:SF22 448 753 9.1E-105 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:2.70.98.10 18 318 1.1E-92 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 16 749 2.0E-148 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 SUPERFAMILY SSF48208 267 687 1.13E-22 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 PANTHER PTHR12143 16 430 9.1E-105 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 PANTHER PTHR12143 448 753 9.1E-105 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:1.20.1610.10 439 612 3.6E-39 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:1.20.1050.60 341 434 4.7E-25 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 Gene3D G3DSA:3.30.2080.10 613 758 7.3E-48 T 19-04-2016 AMED_6769 b07ca3465f4f2fa66d970fa22518c77f 761 Pfam PF07971 Glycosyl hydrolase family 92 237 746 3.4E-134 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.1E-13 T 19-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.1E-13 T 19-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.1E-13 T 19-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 15.988 T 19-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 2.7E-19 T 19-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 SUPERFAMILY SSF143034 2 63 7.06E-19 T 19-04-2016 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 PANTHER PTHR33343 1 62 1.4E-16 T 19-04-2016 AMED_6055 ce5826d558841d4fd01b7cb4b8852df5 64 Pfam PF01632 Ribosomal protein L35 2 62 1.6E-20 T 19-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 SUPERFAMILY SSF54111 1 99 1.96E-43 T 19-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 Pfam PF00547 Urease, gamma subunit 1 99 5.0E-46 T 19-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 2.0E-33 T 19-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 PANTHER PTHR33569 2 100 8.5E-44 T 19-04-2016 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.497 T 19-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 8.1E-47 T 19-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 Gene3D G3DSA:3.30.280.10 1 99 8.6E-48 T 19-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 PANTHER PTHR33569:SF1 2 100 8.5E-44 T 19-04-2016 AMED_8450 94d4fe9fca27fd0cab9cd218da7c2d1b 100 PIRSF PIRSF001223 1 100 5.3E-49 T 19-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 PRINTS PR00132 Glycosyl hydrolase family 2 signature 304 322 3.8E-9 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 PRINTS PR00132 Glycosyl hydrolase family 2 signature 273 287 3.8E-9 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 SUPERFAMILY SSF49785 13 158 2.21E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 265 385 1.6E-28 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Gene3D G3DSA:2.70.98.10 716 818 2.7E-8 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 SUPERFAMILY SSF49303 171 261 6.91E-13 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Pfam PF00703 Glycosyl hydrolases family 2 182 261 1.6E-8 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 SUPERFAMILY SSF51445 267 513 2.06E-52 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Gene3D G3DSA:3.20.20.80 260 517 8.1E-52 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Gene3D G3DSA:2.60.40.320 534 596 3.3E-5 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 PANTHER PTHR10066:SF72 25 558 1.1E-130 T 19-04-2016 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 PANTHER PTHR10066 25 558 1.1E-130 T 19-04-2016 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 SUPERFAMILY SSF49303 531 602 3.45E-7 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Gene3D G3DSA:2.60.40.320 150 259 3.6E-18 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 26 158 4.6E-15 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 SUPERFAMILY SSF74650 706 833 1.73E-14 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Pfam PF02929 Beta galactosidase small chain 715 815 4.0E-4 T 19-04-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_3712 80449d346bc73d8e2cfcbe58d42dc0aa 894 Gene3D G3DSA:2.60.120.260 23 149 1.0E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 Pfam PF04542 Sigma-70 region 2 11 69 1.2E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 SUPERFAMILY SSF88659 96 157 3.71E-9 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 SUPERFAMILY SSF88946 3 78 1.29E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 156 6.4E-13 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 PANTHER PTHR30173:SF15 1 375 6.6E-138 T 19-04-2016 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 Gene3D G3DSA:1.10.10.10 97 158 6.9E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 Gene3D G3DSA:1.10.1740.10 9 69 4.7E-9 T 19-04-2016 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 PANTHER PTHR30173 1 375 6.6E-138 T 19-04-2016 AMED_6417 fdcf20458538514f60758bfc8a7f3f0c 404 Pfam PF08281 Sigma-70, region 4 108 155 5.1E-9 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7373 29b146593f6a7b6d3a47023b51a68ffb 470 PANTHER PTHR11895 1 464 3.9E-189 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7373 29b146593f6a7b6d3a47023b51a68ffb 470 Pfam PF01425 Amidase 5 445 4.6E-99 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7373 29b146593f6a7b6d3a47023b51a68ffb 470 PANTHER PTHR11895:SF55 1 464 3.9E-189 T 19-04-2016 AMED_7373 29b146593f6a7b6d3a47023b51a68ffb 470 Gene3D G3DSA:3.90.1300.10 1 464 4.7E-117 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7373 29b146593f6a7b6d3a47023b51a68ffb 470 SUPERFAMILY SSF75304 1 457 8.9E-115 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7373 29b146593f6a7b6d3a47023b51a68ffb 470 ProSitePatterns PS00571 Amidases signature. 132 163 - T 19-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_2281 5443dc5374f85c2da5d88d998949c9d6 390 SUPERFAMILY SSF50956 39 388 7.06E-49 T 19-04-2016 AMED_2281 5443dc5374f85c2da5d88d998949c9d6 390 Pfam PF02333 Phytase 31 101 7.9E-13 T 19-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 AMED_2281 5443dc5374f85c2da5d88d998949c9d6 390 Pfam PF02333 Phytase 289 368 1.9E-9 T 19-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 AMED_2281 5443dc5374f85c2da5d88d998949c9d6 390 Gene3D G3DSA:2.120.10.20 18 388 1.2E-84 T 19-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.25.40.10 190 223 6.4E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.25.40.10 106 134 6.4E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.25.40.10 1068 1104 6.4E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SMART SM00421 1138 1195 1.1E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.10.10.10 10 77 4.7E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Gene3D G3DSA:1.10.10.10 1134 1197 7.9E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF48452 96 260 9.87E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF46894 1131 1196 3.74E-12 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF00196 Bacterial regulatory proteins, luxR family 1140 1192 7.6E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SMART SM00862 13 93 1.9E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF13191 AAA ATPase domain 263 423 1.3E-18 T 19-04-2016 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF00486 Transcriptional regulatory protein, C terminal 21 76 3.4E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF46894 3 77 1.39E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 ProSitePatterns PS00622 LuxR-type HTH domain signature. 1155 1182 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 1171 1183 4.8E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 1155 1171 4.8E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 1141 1155 4.8E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SMART SM01043 100 244 1.3E-47 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 Pfam PF03704 Bacterial transcriptional activator domain 100 244 1.8E-41 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 PANTHER PTHR35807 1 333 2.4E-60 T 19-04-2016 AMED_8119 f4e7edc9ca9e2c7ee1bd84557b037bef 1199 SUPERFAMILY SSF52540 260 498 2.96E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3235 6e804b558435d1e59a6647627527f774 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 45 66 6.1E-7 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_3235 6e804b558435d1e59a6647627527f774 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 137 154 6.1E-7 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_3235 6e804b558435d1e59a6647627527f774 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 113 129 6.1E-7 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_3235 6e804b558435d1e59a6647627527f774 303 Gene3D G3DSA:3.20.20.70 1 296 5.0E-84 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3235 6e804b558435d1e59a6647627527f774 303 PANTHER PTHR12128 4 296 5.8E-81 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_3235 6e804b558435d1e59a6647627527f774 303 SUPERFAMILY SSF51569 2 294 2.2E-78 T 19-04-2016 AMED_3235 6e804b558435d1e59a6647627527f774 303 SMART SM01130 5 297 3.2E-89 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_3235 6e804b558435d1e59a6647627527f774 303 Pfam PF00701 Dihydrodipicolinate synthetase family 28 293 5.5E-48 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_3235 6e804b558435d1e59a6647627527f774 303 PIRSF PIRSF001365 1 302 1.3E-72 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_5317 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.40.50.300 18 292 4.3E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5317 11b84190764610d7dc17817fcebe0268 702 Pfam PF00009 Elongation factor Tu GTP binding domain 22 288 4.2E-32 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 Pfam PF00679 Elongation factor G C-terminus 616 697 1.4E-21 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF52540 19 288 1.31E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5317 11b84190764610d7dc17817fcebe0268 702 PRINTS PR00315 GTP-binding elongation factor signature 91 101 5.2E-5 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PRINTS PR00315 GTP-binding elongation factor signature 107 118 5.2E-5 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PRINTS PR00315 GTP-binding elongation factor signature 25 38 5.2E-5 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 SMART SM00889 495 613 1.8E-56 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PANTHER PTHR23115 309 700 2.7E-240 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PANTHER PTHR23115 258 289 2.7E-240 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PANTHER PTHR23115 6 184 2.7E-240 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF50447 311 417 1.72E-23 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF50447 255 281 1.72E-23 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 23 156 5.3E-14 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PANTHER PTHR23115:SF98 309 700 2.7E-240 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PANTHER PTHR23115:SF98 258 289 2.7E-240 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 PANTHER PTHR23115:SF98 6 184 2.7E-240 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 Pfam PF03764 Elongation factor G, domain IV 495 611 2.8E-39 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 Pfam PF14492 Elongation Factor G, domain II 420 490 2.7E-20 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 Pfam PF03144 Elongation factor Tu domain 2 330 406 9.4E-8 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMED_5317 11b84190764610d7dc17817fcebe0268 702 SMART SM00838 615 701 8.4E-23 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.30.230.10 499 615 3.7E-46 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_5317 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.30.70.240 616 699 4.7E-25 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF54980 419 489 1.83E-14 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_5317 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF54211 496 611 4.8E-34 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_5317 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:2.40.30.10 311 421 4.5E-25 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 Gene3D G3DSA:3.30.70.870 422 492 5.9E-21 T 19-04-2016 AMED_5317 11b84190764610d7dc17817fcebe0268 702 SUPERFAMILY SSF54980 618 699 6.62E-22 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PANTHER PTHR11946:SF86 1 520 6.2E-178 T 19-04-2016 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PANTHER PTHR11946:SF86 554 588 6.2E-178 T 19-04-2016 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 Pfam PF09334 tRNA synthetases class I (M) 2 407 1.5E-142 T 19-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 Gene3D G3DSA:1.10.730.10 391 577 1.3E-49 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 Gene3D G3DSA:2.20.28.20 139 170 7.9E-19 T 19-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 522 1.1E-144 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PANTHER PTHR11946 1 520 6.2E-178 T 19-04-2016 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PANTHER PTHR11946 554 588 6.2E-178 T 19-04-2016 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PRINTS PR01041 Methionyl-tRNA synthetase signature 3 16 1.0E-24 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 1.0E-24 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PRINTS PR01041 Methionyl-tRNA synthetase signature 84 95 1.0E-24 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PRINTS PR01041 Methionyl-tRNA synthetase signature 395 406 1.0E-24 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PRINTS PR01041 Methionyl-tRNA synthetase signature 36 50 1.0E-24 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 PRINTS PR01041 Methionyl-tRNA synthetase signature 249 260 1.0E-24 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 SUPERFAMILY SSF52374 170 395 3.94E-87 T 19-04-2016 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 SUPERFAMILY SSF52374 4 135 3.94E-87 T 19-04-2016 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 SUPERFAMILY SSF47323 396 523 2.43E-32 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 SUPERFAMILY SSF47323 551 577 2.43E-32 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 SUPERFAMILY SSF57770 136 170 1.44E-11 T 19-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 Hamap MF_00098 Methionine--tRNA ligase [metG]. 1 588 36.718 T 19-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 Gene3D G3DSA:3.40.50.620 177 390 5.0E-87 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_8251 4ec05e8dcca3ffb1dfeefe9d11d482a5 594 Gene3D G3DSA:3.40.50.620 5 138 5.0E-87 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 7.6E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 7.6E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.6E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 7.6E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 7.6E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.6E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 7.5E-5 T 19-04-2016 AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 Gene3D G3DSA:3.40.50.720 3 245 3.1E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 SUPERFAMILY SSF51735 1 245 6.64E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PANTHER PTHR24322 150 182 3.7E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 PANTHER PTHR24322 11 134 3.7E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1438 fcac1ae36bc346be69f73ce3ea3055b6 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 245 2.9E-53 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 SUPERFAMILY SSF53706 11 484 3.14E-161 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 Pfam PF01568 Molydopterin dinucleotide binding domain 524 627 2.5E-23 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 PANTHER PTHR11615 11 634 2.0E-180 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:3.40.228.10 87 270 4.9E-62 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 SUPERFAMILY SSF50692 513 635 2.94E-29 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:3.40.50.740 11 86 1.0E-83 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:3.40.50.740 271 474 1.0E-83 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 PANTHER PTHR11615:SF112 11 634 2.0E-180 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 Gene3D G3DSA:2.40.40.20 475 633 2.1E-29 T 19-04-2016 AMED_4577 8563d8b37500d0bcdf574319e14cc19e 638 Pfam PF00384 Molybdopterin oxidoreductase 11 433 1.3E-77 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 SUPERFAMILY SSF88946 17 109 1.73E-19 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 Pfam PF08281 Sigma-70, region 4 135 181 2.5E-7 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 SUPERFAMILY SSF88659 128 186 1.76E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 Gene3D G3DSA:1.10.10.10 135 187 1.8E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 186 1.2E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 PANTHER PTHR30173 7 198 4.3E-29 T 19-04-2016 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 Pfam PF04542 Sigma-70 region 2 36 103 4.2E-12 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3448 e1953ca2c117c714a4e5f499e48c1a34 452 Gene3D G3DSA:1.10.1740.10 16 111 2.3E-18 T 19-04-2016 AMED_9188 ed85c7ea9952a3dac149ae2f0a5560a6 178 Pfam PF13302 Acetyltransferase (GNAT) domain 9 146 1.0E-22 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_9188 ed85c7ea9952a3dac149ae2f0a5560a6 178 SUPERFAMILY SSF55729 2 173 1.66E-38 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9188 ed85c7ea9952a3dac149ae2f0a5560a6 178 PANTHER PTHR13256:SF39 1 175 2.8E-39 T 19-04-2016 AMED_9188 ed85c7ea9952a3dac149ae2f0a5560a6 178 PANTHER PTHR13256 1 175 2.8E-39 T 19-04-2016 AMED_9188 ed85c7ea9952a3dac149ae2f0a5560a6 178 Gene3D G3DSA:3.40.630.30 2 175 3.1E-42 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1563 375e9af0db2319129cfa8a657df99433 675 Gene3D G3DSA:3.10.129.10 526 673 4.1E-39 T 19-04-2016 IPR029069 HotDog domain AMED_1563 375e9af0db2319129cfa8a657df99433 675 PANTHER PTHR11699 6 442 9.1E-142 T 19-04-2016 AMED_1563 375e9af0db2319129cfa8a657df99433 675 Pfam PF01575 MaoC like domain 538 640 1.5E-19 T 19-04-2016 IPR002539 MaoC-like domain AMED_1563 375e9af0db2319129cfa8a657df99433 675 PANTHER PTHR11699:SF12 6 442 9.1E-142 T 19-04-2016 IPR011966 Phenylacetic acid degradation protein PaaN AMED_1563 375e9af0db2319129cfa8a657df99433 675 SUPERFAMILY SSF54637 527 673 2.06E-32 T 19-04-2016 IPR029069 HotDog domain AMED_1563 375e9af0db2319129cfa8a657df99433 675 Pfam PF00171 Aldehyde dehydrogenase family 12 441 3.2E-61 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_1563 375e9af0db2319129cfa8a657df99433 675 Gene3D G3DSA:3.40.605.10 6 264 1.2E-39 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_1563 375e9af0db2319129cfa8a657df99433 675 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 4 672 5.9E-296 T 19-04-2016 IPR011966 Phenylacetic acid degradation protein PaaN AMED_1563 375e9af0db2319129cfa8a657df99433 675 SUPERFAMILY SSF53720 4 502 9.16E-81 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_1563 375e9af0db2319129cfa8a657df99433 675 Gene3D G3DSA:3.40.309.10 265 454 1.1E-36 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 Pfam PF00067 Cytochrome P450 203 388 1.1E-19 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 Gene3D G3DSA:1.10.630.10 32 419 3.3E-116 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PANTHER PTHR11712 31 419 1.1E-89 T 19-04-2016 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 291 302 7.0E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 359 368 7.0E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 368 379 7.0E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00385 P450 superfamily signature 256 273 7.0E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 SUPERFAMILY SSF48264 34 419 3.41E-90 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 338 353 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 110 121 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 171 186 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 291 302 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 154 170 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 359 368 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 210 232 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 368 379 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 PRINTS PR00359 B-class P450 signature 310 337 1.6E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3927 d593e476d3fbf7e0ad65ae99861017cf 419 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 361 370 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4038 bfca001c3040baa07fb7d9a8e0adf3f7 433 Gene3D G3DSA:1.20.1640.10 274 431 3.6E-9 T 19-04-2016 AMED_4038 bfca001c3040baa07fb7d9a8e0adf3f7 433 Gene3D G3DSA:1.20.1640.10 64 203 3.9E-6 T 19-04-2016 AMED_4038 bfca001c3040baa07fb7d9a8e0adf3f7 433 SUPERFAMILY SSF82866 274 429 2.88E-11 T 19-04-2016 AMED_4038 bfca001c3040baa07fb7d9a8e0adf3f7 433 SUPERFAMILY SSF82866 26 203 3.01E-9 T 19-04-2016 AMED_4038 bfca001c3040baa07fb7d9a8e0adf3f7 433 Pfam PF03176 MMPL family 64 203 8.8E-8 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 Pfam PF07729 FCD domain 105 232 4.6E-21 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 PANTHER PTHR11751 19 83 2.9E-19 T 19-04-2016 AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 PANTHER PTHR11751 99 121 2.9E-19 T 19-04-2016 AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 SMART SM00345 19 80 1.1E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 SMART SM00895 105 233 7.2E-21 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 Gene3D G3DSA:1.10.10.10 17 81 6.7E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 SUPERFAMILY SSF48008 102 238 2.17E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 SUPERFAMILY SSF46785 17 84 1.67E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 1.4E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 1.4E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 Gene3D G3DSA:1.20.120.530 100 239 2.1E-24 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3878 b30974513c6a978ae98f3ac9768d01d0 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 74 1.4E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 SMART SM00986 45 217 9.6E-27 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 SUPERFAMILY SSF52141 4 221 9.48E-44 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 Gene3D G3DSA:3.40.470.10 3 223 9.1E-56 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 PANTHER PTHR33693:SF2 3 220 1.5E-82 T 19-04-2016 AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 Pfam PF03167 Uracil DNA glycosylase superfamily 45 218 4.9E-29 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 SMART SM00987 45 217 9.6E-27 T 19-04-2016 AMED_8187 02b67473cb8e15a929a209c0709d3b23 227 PANTHER PTHR33693 3 220 1.5E-82 T 19-04-2016 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 SUPERFAMILY SSF51905 187 399 6.79E-6 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 Gene3D G3DSA:3.50.50.60 86 194 3.3E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 Gene3D G3DSA:3.50.50.60 9 48 3.3E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 333 2.1E-106 T 19-04-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 Gene3D G3DSA:3.50.50.60 195 225 2.3E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 Gene3D G3DSA:3.50.50.60 275 331 2.3E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 SUPERFAMILY SSF51905 5 231 3.49E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 PANTHER PTHR23024 45 111 2.0E-35 T 19-04-2016 AMED_2693 207972c10f2f1f08f2d80fda85ae52c4 425 PANTHER PTHR23024:SF215 45 111 2.0E-35 T 19-04-2016 AMED_5241 c3fbe552ce504edfca12cefa2baeb23a 81 PANTHER PTHR33678:SF2 1 74 4.6E-17 T 19-04-2016 AMED_5241 c3fbe552ce504edfca12cefa2baeb23a 81 Pfam PF03050 Transposase IS66 family 2 38 1.2E-7 T 19-04-2016 IPR004291 Transposase, IS66 AMED_5241 c3fbe552ce504edfca12cefa2baeb23a 81 PANTHER PTHR33678 1 74 4.6E-17 T 19-04-2016 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 Gene3D G3DSA:3.40.50.2300 185 319 2.8E-47 T 19-04-2016 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 SUPERFAMILY SSF53822 65 344 7.46E-64 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 8 18 5.4E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 18 28 5.4E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 Gene3D G3DSA:3.40.50.2300 60 184 1.4E-30 T 19-04-2016 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 SUPERFAMILY SSF47413 6 62 2.05E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 Pfam PF13377 Periplasmic binding protein-like domain 181 341 2.2E-35 T 19-04-2016 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 5.1E-17 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 SMART SM00354 6 76 3.8E-27 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 PANTHER PTHR30146 6 346 4.8E-95 T 19-04-2016 AMED_6937 60f014cbd586251f8781ebe64990b5bf 346 Gene3D G3DSA:1.10.260.40 7 59 2.1E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9110 9321df1592727fc6e6c005e902c26981 343 PANTHER PTHR30559 1 342 1.7E-196 T 19-04-2016 AMED_9110 9321df1592727fc6e6c005e902c26981 343 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 10 340 4.3E-73 T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_9110 9321df1592727fc6e6c005e902c26981 343 SUPERFAMILY SSF51569 4 340 2.34E-98 T 19-04-2016 AMED_9110 9321df1592727fc6e6c005e902c26981 343 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 86 97 - T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_9110 9321df1592727fc6e6c005e902c26981 343 Pfam PF01116 Fructose-bisphosphate aldolase class-II 9 339 1.0E-81 T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_9110 9321df1592727fc6e6c005e902c26981 343 PIRSF PIRSF001359 6 341 2.1E-65 T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_9110 9321df1592727fc6e6c005e902c26981 343 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 158 169 - T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_9110 9321df1592727fc6e6c005e902c26981 343 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 3 338 1.6E-138 T 19-04-2016 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_9110 9321df1592727fc6e6c005e902c26981 343 PANTHER PTHR30559:SF0 1 342 1.7E-196 T 19-04-2016 AMED_9110 9321df1592727fc6e6c005e902c26981 343 Gene3D G3DSA:3.20.20.70 2 340 3.4E-121 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6126 54cca8e10f2bf1b7b91903336605b258 204 Pfam PF13305 WHG domain 87 161 8.3E-11 T 19-04-2016 IPR025996 WHG domain AMED_6126 54cca8e10f2bf1b7b91903336605b258 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 6.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6126 54cca8e10f2bf1b7b91903336605b258 204 SUPERFAMILY SSF46689 8 73 5.13E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6126 54cca8e10f2bf1b7b91903336605b258 204 PANTHER PTHR30055 9 172 3.4E-18 T 19-04-2016 AMED_6126 54cca8e10f2bf1b7b91903336605b258 204 Gene3D G3DSA:1.10.357.10 9 199 7.0E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6126 54cca8e10f2bf1b7b91903336605b258 204 SUPERFAMILY SSF48498 83 165 1.05E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 SUPERFAMILY SSF51735 3 245 1.17E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PANTHER PTHR24322:SF333 153 184 2.0E-61 T 19-04-2016 AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PANTHER PTHR24322:SF333 7 137 2.0E-61 T 19-04-2016 AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 Gene3D G3DSA:3.40.50.720 4 217 2.4E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 Pfam PF00106 short chain dehydrogenase 4 193 2.3E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.4E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.4E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.4E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.4E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.4E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 189 5.6E-5 T 19-04-2016 AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PANTHER PTHR24322 153 184 2.0E-61 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6372 89fac63d9dbd49c20c9d9a0d314755d8 247 PANTHER PTHR24322 7 137 2.0E-61 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 Gene3D G3DSA:3.30.1180.20 185 331 6.1E-55 T 19-04-2016 AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 PANTHER PTHR28629:SF2 1 332 1.3E-159 T 19-04-2016 AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 Pfam PF02733 Dak1 domain 17 327 1.0E-125 T 19-04-2016 IPR004006 DhaK domain GO:0004371|GO:0006071 AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 SUPERFAMILY SSF82549 10 331 1.31E-118 T 19-04-2016 AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 PANTHER PTHR28629 1 332 1.3E-159 T 19-04-2016 AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 329 3.6E-141 T 19-04-2016 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00563+2.7.-.-|UniPathway: UPA00616 AMED_7748 5f43a39d2b7cca0769fb4d37522a5279 333 Gene3D G3DSA:3.40.50.10440 11 182 1.7E-68 T 19-04-2016 AMED_8358 1234eede40fea58118d8faae699b0cfa 389 Pfam PF01757 Acyltransferase family 16 343 1.3E-23 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_8358 1234eede40fea58118d8faae699b0cfa 389 PANTHER PTHR23028:SF53 12 363 2.8E-53 T 19-04-2016 AMED_8358 1234eede40fea58118d8faae699b0cfa 389 PANTHER PTHR23028 12 363 2.8E-53 T 19-04-2016 AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 Gene3D G3DSA:3.30.1340.10 3 89 1.1E-23 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PANTHER PTHR33705 2 91 1.5E-17 T 19-04-2016 AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.2E-11 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PRINTS PR00107 Phosphocarrier protein signature 58 75 1.2E-11 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 PRINTS PR00107 Phosphocarrier protein signature 43 58 1.2E-11 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 3 87 4.8E-21 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 SUPERFAMILY SSF55594 2 91 1.83E-19 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_4498 8ffca17ce2a8fb48a1eae26c2e0d4c1f 92 Pfam PF00381 PTS HPr component phosphorylation site 3 87 1.7E-22 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2851 3510ee5f268808c6da76b1ea5120d9c8 397 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 196 378 6.0E-13 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_2851 3510ee5f268808c6da76b1ea5120d9c8 397 PANTHER PTHR11926:SF240 1 395 4.4E-41 T 19-04-2016 AMED_2851 3510ee5f268808c6da76b1ea5120d9c8 397 SUPERFAMILY SSF53756 1 395 8.9E-77 T 19-04-2016 AMED_2851 3510ee5f268808c6da76b1ea5120d9c8 397 PANTHER PTHR11926 1 395 4.4E-41 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_2851 3510ee5f268808c6da76b1ea5120d9c8 397 Gene3D G3DSA:3.40.50.2000 236 382 8.9E-32 T 19-04-2016 AMED_2851 3510ee5f268808c6da76b1ea5120d9c8 397 Gene3D G3DSA:3.40.50.2000 2 235 3.6E-8 T 19-04-2016 AMED_6795 d550c667d089c90a7157315320b88aa8 206 Gene3D G3DSA:3.40.50.720 3 191 2.2E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6795 d550c667d089c90a7157315320b88aa8 206 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 92 7.6E-14 T 19-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMED_6795 d550c667d089c90a7157315320b88aa8 206 SUPERFAMILY SSF51735 3 189 8.43E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6795 d550c667d089c90a7157315320b88aa8 206 PANTHER PTHR14239:SF10 1 190 3.7E-91 T 19-04-2016 AMED_6795 d550c667d089c90a7157315320b88aa8 206 PANTHER PTHR14239 1 190 3.7E-91 T 19-04-2016 AMED_2023 f457cda6399811c96f779a25926e9e85 403 PANTHER PTHR10314:SF5 17 28 2.1E-94 T 19-04-2016 AMED_2023 f457cda6399811c96f779a25926e9e85 403 PANTHER PTHR10314 44 389 2.1E-94 T 19-04-2016 AMED_2023 f457cda6399811c96f779a25926e9e85 403 PANTHER PTHR10314 17 28 2.1E-94 T 19-04-2016 AMED_2023 f457cda6399811c96f779a25926e9e85 403 Gene3D G3DSA:3.40.50.1100 95 153 2.5E-5 T 19-04-2016 AMED_2023 f457cda6399811c96f779a25926e9e85 403 PANTHER PTHR10314:SF5 44 389 2.1E-94 T 19-04-2016 AMED_2023 f457cda6399811c96f779a25926e9e85 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 380 2.5E-67 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_2023 f457cda6399811c96f779a25926e9e85 403 SUPERFAMILY SSF53686 4 389 2.23E-87 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_2023 f457cda6399811c96f779a25926e9e85 403 Gene3D G3DSA:3.40.50.1100 154 398 2.6E-58 T 19-04-2016 AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 SMART SM00812 19 384 3.0E-5 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:3.20.20.80 28 330 2.9E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 SUPERFAMILY SSF51445 28 329 1.05E-19 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:2.60.120.260 819 935 1.1E-15 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF00754 F5/8 type C domain 442 563 7.4E-11 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 720 783 3.3E-6 T 19-04-2016 IPR018905 Alpha-galactosidase, NEW3 domain AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 SUPERFAMILY SSF49785 432 564 3.9E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 SUPERFAMILY SSF49785 817 935 4.25E-12 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Gene3D G3DSA:2.60.120.260 421 587 9.1E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF16990 Carbohydrate binding module (family 35) 850 923 6.3E-8 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_8659 7481b6db3ca0ddf7779b64db192e0051 936 Pfam PF01120 Alpha-L-fucosidase 29 236 8.1E-12 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 Gene3D G3DSA:1.10.357.10 60 174 1.6E-17 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 SUPERFAMILY SSF46689 2 73 3.23E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 Gene3D G3DSA:1.10.10.60 3 59 5.6E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 PANTHER PTHR30055:SF77 2 173 1.0E-44 T 19-04-2016 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 PANTHER PTHR30055 2 173 1.0E-44 T 19-04-2016 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 58 2.3E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 Pfam PF13305 WHG domain 81 154 3.6E-12 T 19-04-2016 IPR025996 WHG domain AMED_6000 665e5f761d270ea12cb45fb404fc6f60 181 SUPERFAMILY SSF48498 76 173 9.45E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1235 62f4856e7ccd6ebbc73f26194855443a 118 PANTHER PTHR38839 26 104 9.1E-41 T 19-04-2016 AMED_1235 62f4856e7ccd6ebbc73f26194855443a 118 ProSitePatterns PS00354 HMG-I and HMG-Y DNA-binding domain (A+T-hook). 88 98 - T 19-04-2016 IPR000637 HMG-I/HMG-Y, DNA-binding, conserved site GO:0006355 AMED_1235 62f4856e7ccd6ebbc73f26194855443a 118 PANTHER PTHR38839:SF2 26 104 9.1E-41 T 19-04-2016 AMED_1235 62f4856e7ccd6ebbc73f26194855443a 118 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 16 94 13.154 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_1235 62f4856e7ccd6ebbc73f26194855443a 118 Pfam PF02467 Transcription factor WhiB 30 78 2.4E-15 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SUPERFAMILY SSF48452 559 675 4.37E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 PRINTS PR00364 Disease resistance protein signature 221 235 3.1E-9 T 19-04-2016 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 PRINTS PR00364 Disease resistance protein signature 308 322 3.1E-9 T 19-04-2016 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 PRINTS PR00364 Disease resistance protein signature 142 157 3.1E-9 T 19-04-2016 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 Pfam PF13424 Tetratricopeptide repeat 642 714 2.3E-7 T 19-04-2016 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 PANTHER PTHR22845 85 461 1.8E-62 T 19-04-2016 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SUPERFAMILY SSF48452 641 770 3.79E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 PANTHER PTHR22845:SF4 85 461 1.8E-62 T 19-04-2016 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SUPERFAMILY SSF52540 105 325 2.66E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 643 676 0.09 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 603 636 25.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 683 716 47.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 SMART SM00028 723 756 16.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 Gene3D G3DSA:1.25.40.10 544 756 2.1E-29 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4497 df2e20721206950d7898d7a0ee27bfd5 773 Pfam PF00931 NB-ARC domain 143 320 3.5E-7 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_3974 4587504045ea56199706ba778228b308 159 Pfam PF00480 ROK family 30 92 7.8E-16 T 19-04-2016 IPR000600 ROK family AMED_3974 4587504045ea56199706ba778228b308 159 SUPERFAMILY SSF53067 30 89 1.02E-17 T 19-04-2016 AMED_3974 4587504045ea56199706ba778228b308 159 PANTHER PTHR18964:SF123 30 88 1.1E-13 T 19-04-2016 AMED_3974 4587504045ea56199706ba778228b308 159 Gene3D G3DSA:3.30.420.40 29 90 1.9E-21 T 19-04-2016 AMED_3974 4587504045ea56199706ba778228b308 159 PANTHER PTHR18964 30 88 1.1E-13 T 19-04-2016 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 Pfam PF00285 Citrate synthase, C-terminal domain 55 421 4.8E-134 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 389 403 6.6E-54 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 174 187 6.6E-54 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 369 385 6.6E-54 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 250 278 6.6E-54 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 306 326 6.6E-54 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PRINTS PR00143 Citrate synthase signature 228 243 6.6E-54 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 ProSitePatterns PS00480 Citrate synthase signature. 313 325 - T 19-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 Gene3D G3DSA:1.10.580.10 61 290 1.0E-93 T 19-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PANTHER PTHR11739 46 438 6.8E-198 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 PIRSF PIRSF001369 46 438 8.5E-156 T 19-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 23 432 2.7E-175 T 19-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 SUPERFAMILY SSF48256 13 438 6.54E-156 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8426 7b1d5c9877e393d17032c4d10a58841b 438 Gene3D G3DSA:1.10.230.10 291 383 8.9E-37 T 19-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain AMED_9038 9adc857e7b6c4b8c07f3cf06528c421d 292 PANTHER PTHR10245:SF20 1 292 1.6E-76 T 19-04-2016 AMED_9038 9adc857e7b6c4b8c07f3cf06528c421d 292 Gene3D G3DSA:1.10.260.40 15 76 1.8E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9038 9adc857e7b6c4b8c07f3cf06528c421d 292 PANTHER PTHR10245 1 292 1.6E-76 T 19-04-2016 AMED_9038 9adc857e7b6c4b8c07f3cf06528c421d 292 Pfam PF13560 Helix-turn-helix domain 22 83 1.9E-14 T 19-04-2016 AMED_9038 9adc857e7b6c4b8c07f3cf06528c421d 292 SUPERFAMILY SSF47413 15 76 8.89E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 PANTHER PTHR26402 6 185 1.0E-42 T 19-04-2016 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 ProSitePatterns PS00622 LuxR-type HTH domain signature. 139 166 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 Pfam PF00072 Response regulator receiver domain 5 84 1.5E-11 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 PANTHER PTHR26402:SF151 6 185 1.0E-42 T 19-04-2016 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 167 3.9E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 125 139 3.9E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 155 3.9E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 SMART SM00421 122 179 2.4E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 Pfam PF00196 Bacterial regulatory proteins, luxR family 125 179 6.5E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 SUPERFAMILY SSF52172 5 102 1.31E-17 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 SMART SM00448 1 91 0.0032 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 Gene3D G3DSA:3.40.50.2300 5 96 1.3E-19 T 19-04-2016 AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 Gene3D G3DSA:1.10.10.10 97 185 1.4E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2641 e2e57760ce9fc8bfe7aee7b638d352a7 186 SUPERFAMILY SSF46894 118 185 2.82E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 Pfam PF01259 SAICAR synthetase 3 249 2.4E-94 T 19-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 SUPERFAMILY SSF56104 1 277 1.31E-94 T 19-04-2016 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 278 2.9E-67 T 19-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 Gene3D G3DSA:3.30.470.20 99 228 7.6E-49 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 PANTHER PTHR11609:SF6 1 274 3.8E-102 T 19-04-2016 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 Gene3D G3DSA:3.30.200.20 1 98 9.6E-40 T 19-04-2016 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 1 274 25.216 T 19-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 PANTHER PTHR11609 1 274 3.8E-102 T 19-04-2016 AMED_2184 ed42eafc43fabc65c28dbf9f9bfd580e 280 ProSitePatterns PS01058 SAICAR synthetase signature 2. 186 194 - T 19-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 SUPERFAMILY SSF48498 68 170 1.56E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 36 2.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 PANTHER PTHR30055 1 178 6.1E-42 T 19-04-2016 AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 Gene3D G3DSA:1.10.10.60 1 48 2.4E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 SUPERFAMILY SSF46689 2 62 2.44E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 PANTHER PTHR30055:SF87 1 178 6.1E-42 T 19-04-2016 AMED_8207 90612b8ea749ba2d2ce928d59a852d21 179 Gene3D G3DSA:1.10.357.10 49 174 5.1E-37 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1254 fbe0bf802e995cbd79c5cc4480ad69cf 298 Pfam PF04909 Amidohydrolase 24 296 4.2E-29 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_1254 fbe0bf802e995cbd79c5cc4480ad69cf 298 SUPERFAMILY SSF51556 24 296 1.66E-42 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1254 fbe0bf802e995cbd79c5cc4480ad69cf 298 Gene3D G3DSA:3.20.20.140 22 296 2.7E-50 T 19-04-2016 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 PANTHER PTHR30346 1 308 3.0E-83 T 19-04-2016 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.8E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.8E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.8E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 Gene3D G3DSA:1.10.10.10 1 85 9.2E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 Gene3D G3DSA:3.40.190.10 89 176 4.2E-18 T 19-04-2016 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 SUPERFAMILY SSF53850 90 293 2.79E-42 T 19-04-2016 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 Pfam PF03466 LysR substrate binding domain 88 286 1.1E-44 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.1E-23 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 SUPERFAMILY SSF46785 1 111 7.13E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 PANTHER PTHR30346:SF15 1 308 3.0E-83 T 19-04-2016 AMED_3218 036f1c3e4e38b3b204e7b96776980916 311 Gene3D G3DSA:3.40.190.10 177 249 8.5E-21 T 19-04-2016 AMED_1326 ff07cb21b154503238bdca03c5f8c7b9 98 SUPERFAMILY SSF55729 6 93 1.42E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1326 ff07cb21b154503238bdca03c5f8c7b9 98 PANTHER PTHR31435 1 98 2.7E-22 T 19-04-2016 AMED_1326 ff07cb21b154503238bdca03c5f8c7b9 98 Gene3D G3DSA:3.40.630.30 6 93 1.0E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1326 ff07cb21b154503238bdca03c5f8c7b9 98 Pfam PF14542 GCN5-related N-acetyl-transferase 15 91 7.0E-23 T 19-04-2016 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMED_2254 0bc7fc367d0399bd993b6a8934af12a0 243 PANTHER PTHR12553 1 237 2.6E-43 T 19-04-2016 AMED_2254 0bc7fc367d0399bd993b6a8934af12a0 243 Pfam PF12706 Beta-lactamase superfamily domain 33 212 1.9E-21 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2254 0bc7fc367d0399bd993b6a8934af12a0 243 SUPERFAMILY SSF56281 4 242 4.32E-47 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2254 0bc7fc367d0399bd993b6a8934af12a0 243 Gene3D G3DSA:3.60.15.10 3 242 7.8E-50 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4353 9c030003e077ea19bf3e11589b33125b 220 Gene3D G3DSA:3.40.109.10 25 218 6.7E-45 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_4353 9c030003e077ea19bf3e11589b33125b 220 SUPERFAMILY SSF55469 25 218 2.22E-40 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_4353 9c030003e077ea19bf3e11589b33125b 220 PANTHER PTHR23026 1 216 5.8E-53 T 19-04-2016 AMED_4353 9c030003e077ea19bf3e11589b33125b 220 Pfam PF00881 Nitroreductase family 30 198 2.7E-21 T 19-04-2016 IPR029479 Nitroreductase AMED_4353 9c030003e077ea19bf3e11589b33125b 220 PANTHER PTHR23026:SF90 1 216 5.8E-53 T 19-04-2016 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 12 90 24.188 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 PANTHER PTHR10744 11 91 1.1E-34 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 14 85 4.5E-33 T 19-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 PRINTS PR00973 Ribosomal protein S17 family signature 65 75 1.4E-11 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 PRINTS PR00973 Ribosomal protein S17 family signature 33 56 1.4E-11 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 PRINTS PR00973 Ribosomal protein S17 family signature 75 82 1.4E-11 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 Gene3D G3DSA:2.40.50.140 14 91 9.0E-34 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 SUPERFAMILY SSF50249 14 91 2.06E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 14 85 2.0E-23 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 ProSitePatterns PS00056 Ribosomal protein S17 signature. 65 77 - T 19-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0686 49983a98b0f9f4461b530a8e6d8ac049 92 Pfam PF00366 Ribosomal protein S17 19 85 6.4E-30 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9287 c5eaa042a505e453af263808b1f6de19 831 Pfam PF00912 Transglycosylase 175 337 3.6E-49 T 19-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 AMED_9287 c5eaa042a505e453af263808b1f6de19 831 Pfam PF00905 Penicillin binding protein transpeptidase domain 430 708 3.9E-24 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_9287 c5eaa042a505e453af263808b1f6de19 831 SUPERFAMILY SSF56601 322 341 1.36E-63 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9287 c5eaa042a505e453af263808b1f6de19 831 SUPERFAMILY SSF56601 371 767 1.36E-63 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9287 c5eaa042a505e453af263808b1f6de19 831 PANTHER PTHR32282:SF8 93 802 7.7E-128 T 19-04-2016 AMED_9287 c5eaa042a505e453af263808b1f6de19 831 Gene3D G3DSA:1.10.3810.10 176 338 1.5E-54 T 19-04-2016 AMED_9287 c5eaa042a505e453af263808b1f6de19 831 Gene3D G3DSA:3.40.710.10 339 785 6.1E-71 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9287 c5eaa042a505e453af263808b1f6de19 831 SUPERFAMILY SSF53955 155 354 3.09E-54 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_9287 c5eaa042a505e453af263808b1f6de19 831 PANTHER PTHR32282 93 802 7.7E-128 T 19-04-2016 AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 Pfam PF00069 Protein kinase domain 57 179 1.0E-10 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 PANTHER PTHR24362:SF160 3 224 6.7E-21 T 19-04-2016 AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 SUPERFAMILY SSF56112 4 211 4.6E-27 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 Gene3D G3DSA:1.10.510.10 57 223 6.4E-18 T 19-04-2016 AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 Gene3D G3DSA:3.30.200.20 3 44 6.9E-5 T 19-04-2016 AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 SMART SM00220 12 215 1.4E-9 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2372 577dfec6ad65eaf2b46f707ba770ff83 238 PANTHER PTHR24362 3 224 6.7E-21 T 19-04-2016 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 SMART SM00855 10 173 1.3E-7 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 PANTHER PTHR23029 41 221 6.0E-37 T 19-04-2016 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 PANTHER PTHR23029 10 25 6.0E-37 T 19-04-2016 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 PANTHER PTHR23029:SF1 41 221 6.0E-37 T 19-04-2016 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 PANTHER PTHR23029:SF1 10 25 6.0E-37 T 19-04-2016 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 10 19 - T 19-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 10 209 2.3E-35 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 SUPERFAMILY SSF53254 10 223 3.05E-43 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_5885 d8415eb0393c74c0289ed07d20b2e422 239 Gene3D G3DSA:3.40.50.1240 10 222 8.8E-45 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_3476 82d3e9b493b5f06719d67715ab9ab6b9 284 Pfam PF13560 Helix-turn-helix domain 5 80 1.0E-13 T 19-04-2016 AMED_3476 82d3e9b493b5f06719d67715ab9ab6b9 284 PANTHER PTHR35010:SF2 1 275 3.4E-43 T 19-04-2016 AMED_3476 82d3e9b493b5f06719d67715ab9ab6b9 284 Gene3D G3DSA:1.10.260.40 5 75 7.4E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3476 82d3e9b493b5f06719d67715ab9ab6b9 284 SMART SM00530 9 79 4.2E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3476 82d3e9b493b5f06719d67715ab9ab6b9 284 SUPERFAMILY SSF47413 28 76 2.31E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3476 82d3e9b493b5f06719d67715ab9ab6b9 284 PANTHER PTHR35010 1 275 3.4E-43 T 19-04-2016 AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.34E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.34E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.34E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 5.34E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.34E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.34E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PANTHER PTHR24322 155 187 4.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PANTHER PTHR24322 19 139 4.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 258 1.6E-43 T 19-04-2016 AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.59E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.59E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.59E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PANTHER PTHR24322:SF513 155 187 4.0E-38 T 19-04-2016 AMED_5609 59cac86ed520c3aa05335eb442076c62 262 PANTHER PTHR24322:SF513 19 139 4.0E-38 T 19-04-2016 AMED_5609 59cac86ed520c3aa05335eb442076c62 262 SUPERFAMILY SSF51735 14 258 1.45E-66 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5609 59cac86ed520c3aa05335eb442076c62 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 197 7.6E-4 T 19-04-2016 AMED_5609 59cac86ed520c3aa05335eb442076c62 262 Gene3D G3DSA:3.40.50.720 12 258 1.3E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 Gene3D G3DSA:3.40.50.2300 42 160 2.3E-18 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 Pfam PF13377 Periplasmic binding protein-like domain 157 331 1.6E-26 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 PANTHER PTHR30146:SF3 193 340 3.4E-111 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 33 4.3E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 SMART SM00354 1 60 3.8E-6 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 PANTHER PTHR30146:SF3 1 176 3.4E-111 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 PANTHER PTHR30146 1 176 3.4E-111 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 PANTHER PTHR30146 193 340 3.4E-111 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 Gene3D G3DSA:3.40.50.2300 161 310 3.6E-36 T 19-04-2016 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 Gene3D G3DSA:1.10.260.40 1 41 6.6E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 SUPERFAMILY SSF53822 62 326 2.72E-41 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_8699 3a7abd5ac6c6312d1d1d6c6912013df8 345 SUPERFAMILY SSF47413 1 47 1.97E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3063 7ad02538636ed5665d39332183bc8c0d 285 Gene3D G3DSA:3.40.50.720 2 218 7.4E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3063 7ad02538636ed5665d39332183bc8c0d 285 PANTHER PTHR14194:SF73 2 282 1.0E-103 T 19-04-2016 AMED_3063 7ad02538636ed5665d39332183bc8c0d 285 SUPERFAMILY SSF51735 2 247 5.53E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3063 7ad02538636ed5665d39332183bc8c0d 285 PANTHER PTHR14194 2 282 1.0E-103 T 19-04-2016 AMED_3063 7ad02538636ed5665d39332183bc8c0d 285 Pfam PF05368 NmrA-like family 2 220 6.2E-27 T 19-04-2016 IPR008030 NmrA-like domain AMED_1430 d0d27b39bbd08bbba4507e235ad9c3ae 435 SUPERFAMILY SSF55874 220 338 3.42E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1430 d0d27b39bbd08bbba4507e235ad9c3ae 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 231 336 8.5E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1430 d0d27b39bbd08bbba4507e235ad9c3ae 435 SMART SM00387 228 339 5.5E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1430 d0d27b39bbd08bbba4507e235ad9c3ae 435 Gene3D G3DSA:3.30.565.10 232 343 1.4E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1430 d0d27b39bbd08bbba4507e235ad9c3ae 435 PANTHER PTHR24423 144 432 2.8E-27 T 19-04-2016 AMED_1430 d0d27b39bbd08bbba4507e235ad9c3ae 435 PANTHER PTHR24423:SF490 144 432 2.8E-27 T 19-04-2016 AMED_7870 18970fdacd97384a0c18909bc3d46b9b 460 Pfam PF01425 Amidase 24 445 3.3E-100 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7870 18970fdacd97384a0c18909bc3d46b9b 460 SUPERFAMILY SSF75304 5 454 7.06E-135 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7870 18970fdacd97384a0c18909bc3d46b9b 460 PANTHER PTHR11895 4 460 1.7E-127 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7870 18970fdacd97384a0c18909bc3d46b9b 460 ProSitePatterns PS00571 Amidases signature. 153 184 - T 19-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7870 18970fdacd97384a0c18909bc3d46b9b 460 Gene3D G3DSA:3.90.1300.10 6 457 1.4E-135 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7931 b33d56c2bf24bf3074248729355b976b 127 SUPERFAMILY SSF54593 1 126 2.55E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7931 b33d56c2bf24bf3074248729355b976b 127 Gene3D G3DSA:3.10.180.10 7 125 9.2E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7931 b33d56c2bf24bf3074248729355b976b 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 122 2.2E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_7931 b33d56c2bf24bf3074248729355b976b 127 PANTHER PTHR36437 1 127 2.1E-21 T 19-04-2016 AMED_3794 d4fd0a41911b7349af02edd8923db46e 172 SUPERFAMILY SSF117916 70 146 6.54E-22 T 19-04-2016 AMED_3794 d4fd0a41911b7349af02edd8923db46e 172 Pfam PF01106 NifU-like domain 80 145 1.3E-23 T 19-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMED_3794 d4fd0a41911b7349af02edd8923db46e 172 PANTHER PTHR11178 78 145 2.5E-20 T 19-04-2016 AMED_3794 d4fd0a41911b7349af02edd8923db46e 172 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 84 136 3.0E-11 T 19-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 5 162 2.1E-48 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 Gene3D G3DSA:1.10.10.10 106 162 1.4E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8496 77482479581c88002c47634d1a8a0c3b 176 SUPERFAMILY SSF88946 5 94 3.92E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 Pfam PF08281 Sigma-70, region 4 107 157 4.2E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 Gene3D G3DSA:1.10.1740.10 6 81 1.1E-13 T 19-04-2016 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 PANTHER PTHR30173 1 161 8.2E-25 T 19-04-2016 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 SUPERFAMILY SSF88659 103 161 3.36E-10 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 160 3.2E-13 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8496 77482479581c88002c47634d1a8a0c3b 176 Pfam PF04542 Sigma-70 region 2 13 80 1.2E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 PANTHER PTHR11908:SF68 1 278 8.4E-84 T 19-04-2016 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 SUPERFAMILY SSF55447 172 281 1.11E-18 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Gene3D G3DSA:3.30.43.10 2 52 9.4E-15 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 172 276 1.6E-10 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 SMART SM01092 171 277 3.9E-15 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 2 163 2.7E-47 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Gene3D G3DSA:3.30.390.50 172 278 3.9E-29 T 19-04-2016 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 Gene3D G3DSA:3.30.465.10 53 164 6.4E-35 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 PANTHER PTHR11908 1 278 8.4E-84 T 19-04-2016 AMED_4583 5a4ef874c4aa0f62f1087c8983b7c0ce 289 SUPERFAMILY SSF56176 2 164 4.91E-51 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_3799 023cb420972c72ce9fcfc66ac32fcb85 206 Gene3D G3DSA:3.40.50.10490 23 192 2.3E-39 T 19-04-2016 AMED_3799 023cb420972c72ce9fcfc66ac32fcb85 206 Pfam PF13580 SIS domain 26 149 5.7E-17 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_3799 023cb420972c72ce9fcfc66ac32fcb85 206 PANTHER PTHR30390 6 190 7.1E-39 T 19-04-2016 AMED_3799 023cb420972c72ce9fcfc66ac32fcb85 206 SUPERFAMILY SSF53697 29 192 5.56E-34 T 19-04-2016 AMED_7255 adb7778c0f08eb9911fcaf22929aaecd 420 Pfam PF07690 Major Facilitator Superfamily 30 274 4.3E-23 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7255 adb7778c0f08eb9911fcaf22929aaecd 420 Gene3D G3DSA:1.20.1250.20 232 417 2.9E-21 T 19-04-2016 AMED_7255 adb7778c0f08eb9911fcaf22929aaecd 420 Gene3D G3DSA:1.20.1250.20 20 212 3.5E-20 T 19-04-2016 AMED_7255 adb7778c0f08eb9911fcaf22929aaecd 420 SUPERFAMILY SSF103473 23 418 3.14E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7255 adb7778c0f08eb9911fcaf22929aaecd 420 PANTHER PTHR23528 14 417 7.9E-36 T 19-04-2016 AMED_5318 1370e3a2f119d85af527f2cba015435b 169 PANTHER PTHR30388 26 163 1.5E-19 T 19-04-2016 AMED_5318 1370e3a2f119d85af527f2cba015435b 169 PANTHER PTHR30388:SF4 26 163 1.5E-19 T 19-04-2016 AMED_5318 1370e3a2f119d85af527f2cba015435b 169 Pfam PF13478 XdhC Rossmann domain 21 153 1.5E-22 T 19-04-2016 IPR027051 XdhC Rossmann domain AMED_9007 06318076a0f836807e68c641c18bb8db 301 SUPERFAMILY SSF55729 9 299 5.77E-48 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9007 06318076a0f836807e68c641c18bb8db 301 Gene3D G3DSA:3.40.630.30 153 299 3.0E-30 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9007 06318076a0f836807e68c641c18bb8db 301 PANTHER PTHR23091 124 299 4.9E-36 T 19-04-2016 AMED_9007 06318076a0f836807e68c641c18bb8db 301 Hamap MF_01698 Mycothiol acetyltransferase [mshD]. 5 301 33.55 T 19-04-2016 IPR017813 Mycothiol acetyltransferase GO:0016747 AMED_9007 06318076a0f836807e68c641c18bb8db 301 Pfam PF00583 Acetyltransferase (GNAT) family 54 125 2.2E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_9007 06318076a0f836807e68c641c18bb8db 301 Pfam PF00583 Acetyltransferase (GNAT) family 206 291 1.7E-14 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_9007 06318076a0f836807e68c641c18bb8db 301 PIRSF PIRSF021524 3 301 8.7E-106 T 19-04-2016 IPR017813 Mycothiol acetyltransferase GO:0016747 AMED_9007 06318076a0f836807e68c641c18bb8db 301 PANTHER PTHR23091:SF235 124 299 4.9E-36 T 19-04-2016 AMED_9007 06318076a0f836807e68c641c18bb8db 301 TIGRFAM TIGR03448 mycothiol_MshD: mycothiol synthase 6 299 1.2E-94 T 19-04-2016 IPR017813 Mycothiol acetyltransferase GO:0016747 AMED_9007 06318076a0f836807e68c641c18bb8db 301 Gene3D G3DSA:3.40.630.30 11 125 1.5E-15 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6003 3027cdaec78fa10122662e6e77f3dcf4 397 Pfam PF00999 Sodium/hydrogen exchanger family 14 371 1.4E-45 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_6003 3027cdaec78fa10122662e6e77f3dcf4 397 PANTHER PTHR16254 8 386 2.6E-163 T 19-04-2016 AMED_6003 3027cdaec78fa10122662e6e77f3dcf4 397 PANTHER PTHR16254:SF11 8 386 2.6E-163 T 19-04-2016 AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 Gene3D G3DSA:3.30.420.40 85 224 2.1E-29 T 19-04-2016 AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 SUPERFAMILY SSF53067 90 389 1.62E-39 T 19-04-2016 AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 PANTHER PTHR18964 66 391 1.2E-54 T 19-04-2016 AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 Gene3D G3DSA:3.30.420.40 225 360 1.8E-33 T 19-04-2016 AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 PANTHER PTHR18964:SF108 66 391 1.2E-54 T 19-04-2016 AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 Pfam PF00480 ROK family 91 385 3.0E-45 T 19-04-2016 IPR000600 ROK family AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 SUPERFAMILY SSF46785 16 80 1.6E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2585 b269c8defcd75063b14f876ceb1a96c2 393 Gene3D G3DSA:1.10.10.10 15 81 3.9E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3512 58afc65955865ccc63d1f929cad91ff0 120 SUPERFAMILY SSF46785 1 116 9.82E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3512 58afc65955865ccc63d1f929cad91ff0 120 PANTHER PTHR34134 4 116 2.7E-28 T 19-04-2016 AMED_3512 58afc65955865ccc63d1f929cad91ff0 120 PANTHER PTHR34134:SF1 4 116 2.7E-28 T 19-04-2016 AMED_3512 58afc65955865ccc63d1f929cad91ff0 120 PIRSF PIRSF019455 2 120 4.9E-22 T 19-04-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 AMED_3512 58afc65955865ccc63d1f929cad91ff0 120 Pfam PF03965 Penicillinase repressor 4 114 3.2E-28 T 19-04-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 AMED_3512 58afc65955865ccc63d1f929cad91ff0 120 Gene3D G3DSA:1.10.10.10 3 78 2.9E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 Pfam PF00176 SNF2 family N-terminal domain 399 649 4.6E-49 T 19-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 PANTHER PTHR10799 373 813 1.2E-162 T 19-04-2016 AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 SMART SM00490 696 778 1.8E-23 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 Gene3D G3DSA:3.40.50.300 373 536 7.8E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 Pfam PF00271 Helicase conserved C-terminal domain 668 778 8.4E-18 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 SMART SM00487 376 555 1.4E-24 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 SUPERFAMILY SSF52540 364 581 1.72E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 Pfam PF12419 SNF2 Helicase protein 209 337 9.2E-35 T 19-04-2016 IPR022138 Helicase SWF/SNF-related AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 SUPERFAMILY SSF52540 588 834 1.28E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4708 a8fa0d483081e8e925cf0f270c7bcd47 838 Gene3D G3DSA:3.40.50.300 665 814 1.7E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.40.50.980 3 149 9.5E-17 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF13193 AMP-binding enzyme C-terminal domain 406 481 1.8E-19 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF13193 AMP-binding enzyme C-terminal domain 908 982 9.4E-18 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:2.30.38.10 318 387 2.8E-13 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:2.30.38.10 829 888 7.9E-7 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.30.300.30 893 990 1.1E-28 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.30.300.30 392 487 2.3E-29 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF00501 AMP-binding enzyme 510 898 4.2E-48 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Pfam PF00501 AMP-binding enzyme 52 397 2.5E-60 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 SUPERFAMILY SSF56801 504 994 8.77E-100 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 SUPERFAMILY SSF56801 3 493 4.45E-110 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 ProSitePatterns PS00455 Putative AMP-binding domain signature. 659 670 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 ProSitePatterns PS00455 Putative AMP-binding domain signature. 144 155 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 PANTHER PTHR24096 52 458 7.9E-98 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 PANTHER PTHR24096 960 987 7.9E-98 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.40.50.980 150 302 3.1E-38 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.40.50.980 665 816 2.9E-24 T 19-04-2016 AMED_7195 dd2c98928c37f73afa1a12f461f85ecf 1008 Gene3D G3DSA:3.40.50.980 505 664 6.5E-16 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Pfam PF01571 Aminomethyltransferase folate-binding domain 465 726 1.6E-67 T 19-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 SUPERFAMILY SSF51905 110 262 2.73E-21 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:2.40.30.110 750 844 4.8E-17 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 SUPERFAMILY SSF101790 746 842 1.03E-14 T 19-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 230 254 3.1E-7 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 380 399 3.1E-7 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 134 3.1E-7 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PANTHER PTHR13847 110 176 1.0E-56 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PANTHER PTHR13847 460 768 1.0E-56 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 SUPERFAMILY SSF103025 458 745 7.22E-91 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.30.70.1400 519 594 1.2E-23 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 8 87 5.1E-22 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 733 832 8.0E-16 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PANTHER PTHR13847:SF189 110 176 1.0E-56 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 PANTHER PTHR13847:SF189 460 768 1.0E-56 T 19-04-2016 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.50.50.60 105 322 2.6E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.30.1360.120 613 703 2.4E-24 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_7551 5f58171ffac9087a08e5c14cc4745ee2 845 Gene3D G3DSA:3.30.1360.120 459 518 2.4E-24 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 PANTHER PTHR18964 218 306 6.7E-74 T 19-04-2016 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 PANTHER PTHR18964 1 186 6.7E-74 T 19-04-2016 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 PANTHER PTHR18964:SF123 218 306 6.7E-74 T 19-04-2016 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 PANTHER PTHR18964:SF123 1 186 6.7E-74 T 19-04-2016 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 Gene3D G3DSA:3.30.420.40 1 129 4.9E-38 T 19-04-2016 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 SUPERFAMILY SSF53067 1 309 2.42E-62 T 19-04-2016 AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 Pfam PF00480 ROK family 1 306 4.6E-74 T 19-04-2016 IPR000600 ROK family AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 ProSitePatterns PS01125 ROK family signature. 124 151 - T 19-04-2016 IPR000600 ROK family AMED_2451 7a319c91af1df5c1f77f72ba6986db37 312 Gene3D G3DSA:3.30.420.40 130 282 6.9E-50 T 19-04-2016 AMED_1724 a044482353e2759fa8a496781bf56ca8 200 SUPERFAMILY SSF52016 1 187 1.86E-50 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_1724 a044482353e2759fa8a496781bf56ca8 200 Pfam PF00694 Aconitase C-terminal domain 1 114 1.1E-22 T 19-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1724 a044482353e2759fa8a496781bf56ca8 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 191 38.828 T 19-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1724 a044482353e2759fa8a496781bf56ca8 200 Gene3D G3DSA:3.20.19.10 1 186 4.0E-37 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_1724 a044482353e2759fa8a496781bf56ca8 200 PANTHER PTHR11670:SF27 1 192 2.8E-86 T 19-04-2016 AMED_1724 a044482353e2759fa8a496781bf56ca8 200 PANTHER PTHR11670 1 192 2.8E-86 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_1724 a044482353e2759fa8a496781bf56ca8 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 180 7.2E-54 T 19-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_9004 80d55ff92d9997953444a79d72cfc2e3 305 SUPERFAMILY SSF161098 34 293 9.29E-41 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9004 80d55ff92d9997953444a79d72cfc2e3 305 PANTHER PTHR30425 7 303 2.3E-89 T 19-04-2016 AMED_9004 80d55ff92d9997953444a79d72cfc2e3 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 304 1.2E-27 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9004 80d55ff92d9997953444a79d72cfc2e3 305 Gene3D G3DSA:1.10.3720.10 28 299 1.6E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9004 80d55ff92d9997953444a79d72cfc2e3 305 PANTHER PTHR30425:SF0 7 303 2.3E-89 T 19-04-2016 AMED_9004 80d55ff92d9997953444a79d72cfc2e3 305 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 298 2.6E-79 T 19-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 Pfam PF02272 DHHA1 domain 811 879 5.4E-11 T 19-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 886 165.68 T 19-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 69 80 3.4E-26 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 279 295 3.4E-26 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 196 207 3.4E-26 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 229 242 3.4E-26 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PRINTS PR00980 Alanyl-tRNA synthetase signature 303 316 3.4E-26 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF101353 249 467 1.83E-57 T 19-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 661 704 8.7E-14 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 SMART SM00863 661 704 4.1E-17 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF50447 460 559 3.14E-19 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF55186 560 721 7.46E-43 T 19-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 Gene3D G3DSA:3.30.930.10 2 244 1.6E-90 T 19-04-2016 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PANTHER PTHR11777 1 884 0.0 T 19-04-2016 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 Pfam PF01411 tRNA synthetases class II (A) 5 563 2.1E-195 T 19-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 SUPERFAMILY SSF55681 2 248 7.21E-86 T 19-04-2016 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 865 1.7E-256 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMED_2713 71869bda6d09c39476ef9a74fff89c5a 886 PANTHER PTHR11777:SF9 1 884 0.0 T 19-04-2016 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 Gene3D G3DSA:3.40.50.2300 179 331 2.0E-34 T 19-04-2016 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 Gene3D G3DSA:1.10.260.40 13 64 2.2E-23 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 SUPERFAMILY SSF53822 69 318 1.59E-51 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 PANTHER PTHR30146 12 331 1.9E-85 T 19-04-2016 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 SUPERFAMILY SSF47413 11 70 1.31E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 Pfam PF13377 Periplasmic binding protein-like domain 193 329 8.0E-22 T 19-04-2016 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.0E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 Gene3D G3DSA:3.40.50.2300 65 178 1.2E-31 T 19-04-2016 AMED_4088 7dc397b6ea2e73c1e750f8f6524f4eba 332 SMART SM00354 12 82 3.2E-28 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_8215 5afd1ec45a239b125a16660c6e461729 310 PANTHER PTHR30522 21 305 9.2E-62 T 19-04-2016 AMED_8215 5afd1ec45a239b125a16660c6e461729 310 SUPERFAMILY SSF101386 86 184 9.45E-24 T 19-04-2016 AMED_8215 5afd1ec45a239b125a16660c6e461729 310 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 105 180 2.1E-26 T 19-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMED_8215 5afd1ec45a239b125a16660c6e461729 310 PANTHER PTHR30522:SF0 21 305 9.2E-62 T 19-04-2016 IPR011551 NTP pyrophosphohydrolase MazG AMED_8215 5afd1ec45a239b125a16660c6e461729 310 Gene3D G3DSA:1.10.287.1080 81 157 1.3E-11 T 19-04-2016 AMED_8215 5afd1ec45a239b125a16660c6e461729 310 TIGRFAM TIGR00444 mazG: MazG family protein 89 234 4.3E-44 T 19-04-2016 IPR011551 NTP pyrophosphohydrolase MazG AMED_4157 f8de11d9a36b21d15731a5db0e25389b 497 Pfam PF13088 BNR repeat-like domain 62 365 2.0E-27 T 19-04-2016 IPR011040 Sialidases AMED_4157 f8de11d9a36b21d15731a5db0e25389b 497 PANTHER PTHR10628:SF5 39 387 2.9E-67 T 19-04-2016 AMED_4157 f8de11d9a36b21d15731a5db0e25389b 497 SUPERFAMILY SSF50939 37 389 1.54E-71 T 19-04-2016 IPR011040 Sialidases AMED_4157 f8de11d9a36b21d15731a5db0e25389b 497 Gene3D G3DSA:2.120.10.10 44 387 3.8E-70 T 19-04-2016 IPR011040 Sialidases AMED_4157 f8de11d9a36b21d15731a5db0e25389b 497 PANTHER PTHR10628 39 387 2.9E-67 T 19-04-2016 IPR026856 Sialidase family GO:0004308 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 AMED_1370 8cd2deb779a28ab2a9c1c867d53df7d6 129 PANTHER PTHR33799 3 126 2.5E-24 T 19-04-2016 AMED_1370 8cd2deb779a28ab2a9c1c867d53df7d6 129 SUPERFAMILY SSF53062 2 124 9.81E-30 T 19-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMED_1370 8cd2deb779a28ab2a9c1c867d53df7d6 129 Gene3D G3DSA:3.40.50.510 2 125 6.3E-33 T 19-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMED_1370 8cd2deb779a28ab2a9c1c867d53df7d6 129 Pfam PF03610 PTS system fructose IIA component 5 102 9.5E-20 T 19-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 SUPERFAMILY SSF110221 356 510 2.48E-52 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 35 346 5.3E-133 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 PANTHER PTHR39447:SF2 1 510 1.2E-180 T 19-04-2016 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 364 505 2.7E-55 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 PANTHER PTHR39447 1 510 1.2E-180 T 19-04-2016 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 Gene3D G3DSA:2.80.10.50 356 510 1.3E-49 T 19-04-2016 AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 Gene3D G3DSA:2.60.120.200 34 346 5.0E-130 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_1706 b3d9c5367c5a5879a20050aeb57a69de 511 SUPERFAMILY SSF49899 35 346 1.22E-104 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 PANTHER PTHR11632:SF59 196 545 5.1E-170 T 19-04-2016 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 PANTHER PTHR11632:SF59 2 129 5.1E-170 T 19-04-2016 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 PANTHER PTHR11632 196 545 5.1E-170 T 19-04-2016 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 PANTHER PTHR11632 2 129 5.1E-170 T 19-04-2016 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 Gene3D G3DSA:3.90.700.10 321 479 1.9E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 283 302 8.7E-6 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 8.7E-6 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 Pfam PF00890 FAD binding domain 6 527 7.7E-84 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 SUPERFAMILY SSF51905 211 311 4.81E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 SUPERFAMILY SSF51905 2 147 4.81E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 SUPERFAMILY SSF51905 486 544 4.81E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 Gene3D G3DSA:3.50.50.60 483 544 3.7E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 Gene3D G3DSA:3.50.50.60 202 305 3.7E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 Gene3D G3DSA:3.50.50.60 2 138 3.7E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2520 6665e214099ba5a6d34bd4c82e7c4171 554 SUPERFAMILY SSF56425 307 481 3.92E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_7618 0abc8e4a136f396e891b36bd15dfa03e 264 PANTHER PTHR30188 1 263 3.7E-82 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_7618 0abc8e4a136f396e891b36bd15dfa03e 264 Pfam PF02405 Permease MlaE 43 254 2.3E-60 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_7618 0abc8e4a136f396e891b36bd15dfa03e 264 PANTHER PTHR30188:SF4 1 263 3.7E-82 T 19-04-2016 AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 SMART SM00382 46 239 7.6E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 PANTHER PTHR24220 11 339 1.1E-159 T 19-04-2016 AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 Gene3D G3DSA:3.40.50.300 8 263 1.7E-80 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 Pfam PF00005 ABC transporter 38 189 1.2E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 PANTHER PTHR24220:SF336 11 339 1.1E-159 T 19-04-2016 AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 329 1.4E-25 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 307 4.3E-15 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 SUPERFAMILY SSF52540 10 261 2.6E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8898 0b0ceb5c4973d673fb7ef91cf302b66e 370 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 127 23.748 T 19-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 6 52 4.8E-19 T 19-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 Gene3D G3DSA:1.20.5.710 3 52 9.2E-19 T 19-04-2016 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 127 3.3E-47 T 19-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 SUPERFAMILY SSF48300 5 62 3.53E-14 T 19-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 Gene3D G3DSA:3.30.1390.10 54 127 2.4E-29 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 127 1.6E-26 T 19-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 SUPERFAMILY SSF54736 55 127 2.62E-21 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMED_0600 3debab485f35073e5d61c9f14e7a429c 127 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 98 4.0E-13 T 19-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 SMART SM00448 2 115 1.0E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 PANTHER PTHR26402 2 174 3.7E-58 T 19-04-2016 AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 SUPERFAMILY SSF52172 2 154 1.99E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 Gene3D G3DSA:3.40.50.2300 2 122 1.8E-28 T 19-04-2016 AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 Gene3D G3DSA:1.10.10.10 160 208 4.4E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 Pfam PF00072 Response regulator receiver domain 4 115 8.7E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 PANTHER PTHR26402:SF434 2 174 3.7E-58 T 19-04-2016 AMED_6072 7f494d6751aff2f1497a6e4f51038645 222 PIRSF PIRSF006171 1 222 1.9E-70 T 19-04-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Pfam PF08148 DSHCT (NUC185) domain 770 939 6.1E-39 T 19-04-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal AMED_4878 477e7594fac6d1a3e8348f0473125579 943 SMART SM00490 348 438 4.8E-14 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Pfam PF00270 DEAD/DEAH box helicase 39 186 3.5E-17 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Pfam PF00271 Helicase conserved C-terminal domain 361 438 4.4E-5 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Pfam PF13234 rRNA-processing arch domain 494 594 4.2E-4 T 19-04-2016 IPR025696 rRNA-processing arch domain AMED_4878 477e7594fac6d1a3e8348f0473125579 943 SMART SM00487 32 214 6.9E-31 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Gene3D G3DSA:3.40.50.300 33 216 1.5E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4878 477e7594fac6d1a3e8348f0473125579 943 SMART SM01142 767 943 5.6E-62 T 19-04-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal AMED_4878 477e7594fac6d1a3e8348f0473125579 943 SUPERFAMILY SSF52540 358 451 1.14E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4878 477e7594fac6d1a3e8348f0473125579 943 SUPERFAMILY SSF52540 45 187 1.14E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4878 477e7594fac6d1a3e8348f0473125579 943 SUPERFAMILY SSF52540 260 316 1.14E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Gene3D G3DSA:3.40.50.300 361 445 1.6E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4878 477e7594fac6d1a3e8348f0473125579 943 Gene3D G3DSA:3.40.50.300 294 319 1.6E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1145 907eb6d81e01bad21ea628338b703de4 316 PANTHER PTHR38480 1 315 1.9E-59 T 19-04-2016 AMED_1145 907eb6d81e01bad21ea628338b703de4 316 Pfam PF06271 RDD family 19 150 1.4E-17 T 19-04-2016 IPR010432 RDD AMED_1145 907eb6d81e01bad21ea628338b703de4 316 PANTHER PTHR38480:SF1 1 315 1.9E-59 T 19-04-2016 AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 SUPERFAMILY SSF48498 79 188 3.24E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 PANTHER PTHR30055:SF89 1 194 3.9E-43 T 19-04-2016 AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 Gene3D G3DSA:1.10.357.10 68 189 1.1E-15 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 SUPERFAMILY SSF46689 5 78 1.95E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 Gene3D G3DSA:1.10.10.60 3 66 8.1E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 PANTHER PTHR30055 1 194 3.9E-43 T 19-04-2016 AMED_3550 81c1f824ebc82fdeb75e7d4aac926640 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 1.9E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 SUPERFAMILY SSF55811 13 159 2.17E-26 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 Pfam PF00293 NUDIX domain 24 148 4.7E-13 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 Gene3D G3DSA:1.10.10.10 155 228 6.0E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 SUPERFAMILY SSF46785 163 234 2.99E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 PANTHER PTHR22769 2 215 1.8E-56 T 19-04-2016 AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 Gene3D G3DSA:3.90.79.10 14 152 1.8E-39 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8184 9ba727000df283bfd4f4a3b4046250c0 240 PANTHER PTHR22769:SF42 2 215 1.8E-56 T 19-04-2016 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 203 5.7E-17 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 Gene3D G3DSA:1.20.140.10 223 387 2.5E-46 T 19-04-2016 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 SUPERFAMILY SSF56645 4 244 4.19E-61 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 PANTHER PTHR10909 4 388 3.7E-92 T 19-04-2016 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 Gene3D G3DSA:2.40.110.10 125 222 3.3E-26 T 19-04-2016 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 Gene3D G3DSA:1.10.540.10 4 121 2.8E-29 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 119 4.4E-26 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 SUPERFAMILY SSF47203 229 386 1.93E-39 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2889 7b1484adca3ad7773d54425ba478b674 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 239 379 1.8E-31 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_4192 f5acdd2521383bb5a18e143ac68fb7c3 258 Gene3D G3DSA:1.10.10.10 170 222 2.8E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4192 f5acdd2521383bb5a18e143ac68fb7c3 258 Pfam PF03861 ANTAR domain 172 219 9.6E-17 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4192 f5acdd2521383bb5a18e143ac68fb7c3 258 SUPERFAMILY SSF52172 105 219 3.23E-7 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4192 f5acdd2521383bb5a18e143ac68fb7c3 258 SMART SM01012 164 219 6.9E-17 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_1709 5441dd926702ccc100a12b8e317691a6 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 8.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1709 5441dd926702ccc100a12b8e317691a6 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 8.8E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1709 5441dd926702ccc100a12b8e317691a6 199 Gene3D G3DSA:1.10.357.10 14 171 6.5E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1709 5441dd926702ccc100a12b8e317691a6 199 SUPERFAMILY SSF46689 14 89 2.94E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1709 5441dd926702ccc100a12b8e317691a6 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 4.0E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1709 5441dd926702ccc100a12b8e317691a6 199 PANTHER PTHR30055 6 197 2.5E-15 T 19-04-2016 AMED_3030 de5bb839bbc462cf0418f4c863a2f19c 79 SUPERFAMILY SSF52540 11 61 8.6E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3030 de5bb839bbc462cf0418f4c863a2f19c 79 PANTHER PTHR24220 8 72 3.1E-24 T 19-04-2016 AMED_3030 de5bb839bbc462cf0418f4c863a2f19c 79 Pfam PF00005 ABC transporter 23 71 9.5E-11 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3030 de5bb839bbc462cf0418f4c863a2f19c 79 Gene3D G3DSA:3.40.50.300 3 72 1.4E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8288 17e5450623784ad5c394da4b224b1945 202 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 4 200 28.099 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_8288 17e5450623784ad5c394da4b224b1945 202 PANTHER PTHR22935 43 201 5.9E-66 T 19-04-2016 AMED_8288 17e5450623784ad5c394da4b224b1945 202 SUPERFAMILY SSF55166 2 201 4.71E-67 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_8288 17e5450623784ad5c394da4b224b1945 202 PANTHER PTHR22935:SF67 43 201 5.9E-66 T 19-04-2016 AMED_8288 17e5450623784ad5c394da4b224b1945 202 Gene3D G3DSA:3.30.1380.10 2 201 3.6E-65 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_8288 17e5450623784ad5c394da4b224b1945 202 PIRSF PIRSF026671 1 202 1.4E-51 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_8288 17e5450623784ad5c394da4b224b1945 202 Pfam PF01427 D-ala-D-ala dipeptidase 4 201 8.9E-58 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_6311 715f8274c34cc24a53dd863e7fcdac54 265 PANTHER PTHR10245 1 264 2.0E-32 T 19-04-2016 AMED_6311 715f8274c34cc24a53dd863e7fcdac54 265 Gene3D G3DSA:1.10.260.40 3 55 1.4E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6311 715f8274c34cc24a53dd863e7fcdac54 265 Pfam PF12844 Helix-turn-helix domain 5 54 1.1E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_6311 715f8274c34cc24a53dd863e7fcdac54 265 SUPERFAMILY SSF47413 3 56 5.63E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6311 715f8274c34cc24a53dd863e7fcdac54 265 PANTHER PTHR10245:SF7 1 264 2.0E-32 T 19-04-2016 AMED_6311 715f8274c34cc24a53dd863e7fcdac54 265 SMART SM00530 4 59 2.0E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 SUPERFAMILY SSF52096 3 254 1.07E-74 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 253 1.7E-48 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 PANTHER PTHR11941 3 251 2.1E-74 T 19-04-2016 AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 PANTHER PTHR11941:SF13 3 251 2.1E-74 T 19-04-2016 AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 Gene3D G3DSA:3.90.226.10 4 196 9.0E-52 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7169 4d4b91a2d63f578cb4417335e753fa9c 254 Gene3D G3DSA:1.10.12.10 197 254 9.3E-22 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 Pfam PF00092 von Willebrand factor type A domain 56 216 3.6E-6 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 PANTHER PTHR11878 318 428 1.7E-12 T 19-04-2016 AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 PANTHER PTHR11878:SF20 318 428 1.7E-12 T 19-04-2016 IPR026919 G protein-coupled receptor 98 GO:0004930|GO:0016021 AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 Gene3D G3DSA:3.40.50.410 56 180 1.1E-11 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 SUPERFAMILY SSF141072 310 427 9.94E-32 T 19-04-2016 AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 SMART SM00237 304 402 3.2E-10 T 19-04-2016 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 Pfam PF03160 Calx-beta domain 308 402 3.7E-18 T 19-04-2016 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMED_4068 70356cb374fdf8e69a8e513a2893423f 619 SUPERFAMILY SSF53300 56 233 8.74E-16 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 SUPERFAMILY SSF52777 97 338 1.25E-54 T 19-04-2016 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 SMART SM00861 875 1068 1.3E-48 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Gene3D G3DSA:3.30.559.10 95 338 8.5E-51 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 SUPERFAMILY SSF52518 862 1075 3.24E-44 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 104 338 1.6E-54 T 19-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 1 24 3.4E-7 T 19-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Pfam PF02779 Transketolase, pyrimidine binding domain 875 1068 3.4E-52 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Gene3D G3DSA:3.40.50.970 444 816 8.2E-76 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 PANTHER PTHR23152:SF4 323 1216 0.0 T 19-04-2016 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 SUPERFAMILY SSF52518 405 821 1.44E-83 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 PANTHER PTHR23152 323 1216 0.0 T 19-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 372 1214 4.5E-298 T 19-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Gene3D G3DSA:3.40.50.970 893 1079 9.6E-22 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Pfam PF00676 Dehydrogenase E1 component 490 813 4.6E-59 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 1073 1215 1.5E-43 T 19-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMED_7949 6aada84e5a5e9d9cc0aeebc3385b114b 1216 PIRSF PIRSF000157 1 1216 0.0 T 19-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 Gene3D G3DSA:3.20.20.70 408 564 2.2E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 SUPERFAMILY SSF51294 287 342 6.67E-17 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 SUPERFAMILY SSF51294 51 180 6.67E-17 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 SMART SM00306 49 155 1.9E-5 T 19-04-2016 IPR003587 Hint domain N-terminal AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 SMART SM00305 303 348 0.0019 T 19-04-2016 IPR003586 Hint domain C-terminal AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 SUPERFAMILY SSF102114 407 539 2.35E-7 T 19-04-2016 AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 PANTHER PTHR11228 343 556 5.6E-54 T 19-04-2016 AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 PANTHER PTHR11228:SF26 343 556 5.6E-54 T 19-04-2016 AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 Gene3D G3DSA:2.170.16.10 50 180 8.6E-24 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_2699 9d424bb60b8188bb7ecbbf57dd36ba38 608 Gene3D G3DSA:2.170.16.10 256 342 8.6E-24 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_7872 6b84cf037a2730c109dff4e0958f2a3e 246 PIRSF PIRSF015736 8 245 9.8E-57 T 19-04-2016 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AMED_7872 6b84cf037a2730c109dff4e0958f2a3e 246 PANTHER PTHR40267 10 239 5.0E-50 T 19-04-2016 AMED_8123 a3f21c9f3fda5e977c530bbce4e78e1c 418 SUPERFAMILY SSF53850 20 417 3.83E-50 T 19-04-2016 AMED_8123 a3f21c9f3fda5e977c530bbce4e78e1c 418 PANTHER PTHR30061 1 417 5.0E-88 T 19-04-2016 AMED_8123 a3f21c9f3fda5e977c530bbce4e78e1c 418 Gene3D G3DSA:3.40.190.10 158 347 3.7E-24 T 19-04-2016 AMED_8123 a3f21c9f3fda5e977c530bbce4e78e1c 418 Gene3D G3DSA:3.40.190.10 29 157 8.5E-15 T 19-04-2016 AMED_8123 a3f21c9f3fda5e977c530bbce4e78e1c 418 PANTHER PTHR30061:SF28 1 417 5.0E-88 T 19-04-2016 AMED_8123 a3f21c9f3fda5e977c530bbce4e78e1c 418 Pfam PF13416 Bacterial extracellular solute-binding protein 45 348 1.4E-27 T 19-04-2016 AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 165 204 1.0E-5 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 Gene3D G3DSA:3.30.360.10 179 300 1.5E-15 T 19-04-2016 AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 PANTHER PTHR22604 10 246 2.8E-38 T 19-04-2016 AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 SUPERFAMILY SSF55347 155 251 2.29E-10 T 19-04-2016 AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 10 123 2.5E-18 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 Gene3D G3DSA:3.40.50.720 8 178 6.5E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9030 c8eb5c84b1ac6e6af194cd5ded62d954 302 SUPERFAMILY SSF51735 5 140 1.19E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 SMART SM00382 30 202 2.8E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 PANTHER PTHR24220 7 203 2.2E-83 T 19-04-2016 AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 SUPERFAMILY SSF52540 7 215 1.3E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 Gene3D G3DSA:3.40.50.300 4 220 1.2E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 Pfam PF00005 ABC transporter 21 152 2.1E-26 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5023 3bf425a46e6d2af2ad633b4b1c3775d0 234 PANTHER PTHR24220:SF365 7 203 2.2E-83 T 19-04-2016 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB GO:0005215|GO:0005524|GO:0005886|GO:0006810 AMED_7996 2e14257b500bdb5aa9b257ccbd3858ee 322 PANTHER PTHR30595 1 320 3.5E-51 T 19-04-2016 AMED_7996 2e14257b500bdb5aa9b257ccbd3858ee 322 Gene3D G3DSA:1.10.10.10 4 64 8.0E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7996 2e14257b500bdb5aa9b257ccbd3858ee 322 PANTHER PTHR30595:SF4 1 320 3.5E-51 T 19-04-2016 AMED_7996 2e14257b500bdb5aa9b257ccbd3858ee 322 Pfam PF13280 WYL domain 144 317 3.2E-37 T 19-04-2016 IPR026881 WYL domain AMED_7996 2e14257b500bdb5aa9b257ccbd3858ee 322 Pfam PF08279 HTH domain 9 60 9.6E-15 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_7996 2e14257b500bdb5aa9b257ccbd3858ee 322 SUPERFAMILY SSF46785 4 63 4.8E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 Gene3D G3DSA:1.10.287.130 228 287 1.2E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 299 4.8E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 Pfam PF00672 HAMP domain 166 232 1.6E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 SUPERFAMILY SSF47384 221 299 5.1E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 4.5E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 4.5E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 4.5E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 4.5E-14 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 SMART SM00387 342 452 6.1E-31 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 449 2.0E-18 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 PANTHER PTHR24423 178 449 2.0E-68 T 19-04-2016 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 Gene3D G3DSA:3.30.565.10 288 451 7.3E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 SMART SM00388 238 301 9.4E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 PANTHER PTHR24423:SF399 178 449 2.0E-68 T 19-04-2016 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 SMART SM00304 184 237 1.3E-9 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 SUPERFAMILY SSF55874 290 451 1.7E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8636 c6b695b80ea6e71f4c29ede2eb129a4b 457 SUPERFAMILY SSF158472 186 233 3.27E-7 T 19-04-2016 AMED_5451 73c449dd07292cb9c70367582dfa37cb 411 Gene3D G3DSA:2.130.10.10 18 407 1.5E-23 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_5451 73c449dd07292cb9c70367582dfa37cb 411 SUPERFAMILY SSF82171 23 401 2.94E-13 T 19-04-2016 AMED_5451 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 80 108 0.0012 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_5451 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 369 401 0.026 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_5451 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 195 215 0.062 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_5451 73c449dd07292cb9c70367582dfa37cb 411 Pfam PF07676 WD40-like Beta Propeller Repeat 17 39 0.0059 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_0496 71183169de827a64d2e318e69d8dbc3e 188 Pfam PF00578 AhpC/TSA family 52 166 5.6E-20 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_0496 71183169de827a64d2e318e69d8dbc3e 188 ProSitePatterns PS00194 Thioredoxin family active site. 78 96 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMED_0496 71183169de827a64d2e318e69d8dbc3e 188 PANTHER PTHR10681:SF125 48 172 2.2E-32 T 19-04-2016 AMED_0496 71183169de827a64d2e318e69d8dbc3e 188 SUPERFAMILY SSF52833 50 186 2.37E-28 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_0496 71183169de827a64d2e318e69d8dbc3e 188 PANTHER PTHR10681 48 172 2.2E-32 T 19-04-2016 AMED_0496 71183169de827a64d2e318e69d8dbc3e 188 Gene3D G3DSA:3.40.30.10 3 187 2.7E-36 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6917 a90e3062c6bb299d40d1718701d2bcc4 457 Gene3D G3DSA:3.40.190.10 11 152 1.9E-10 T 19-04-2016 AMED_6917 a90e3062c6bb299d40d1718701d2bcc4 457 Pfam PF01547 Bacterial extracellular solute-binding protein 59 341 3.1E-26 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_6917 a90e3062c6bb299d40d1718701d2bcc4 457 SUPERFAMILY SSF53850 27 453 5.98E-51 T 19-04-2016 AMED_6917 a90e3062c6bb299d40d1718701d2bcc4 457 PANTHER PTHR30061 11 455 6.6E-51 T 19-04-2016 AMED_6917 a90e3062c6bb299d40d1718701d2bcc4 457 Gene3D G3DSA:3.40.190.10 157 353 2.6E-33 T 19-04-2016 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 ProSitePatterns PS00216 Sugar transport proteins signature 1. 313 330 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 PANTHER PTHR23508:SF1 25 467 6.3E-144 T 19-04-2016 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 SUPERFAMILY SSF103473 22 442 7.32E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 Gene3D G3DSA:1.20.1250.20 258 444 5.2E-17 T 19-04-2016 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 Gene3D G3DSA:1.20.1250.20 26 234 1.9E-18 T 19-04-2016 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 Pfam PF00083 Sugar (and other) transporter 33 440 3.5E-29 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 ProSitePatterns PS00217 Sugar transport proteins signature 2. 138 163 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4000 bd1d795f3bf70acaffa0e0c6cfa9485d 467 PANTHER PTHR23508 25 467 6.3E-144 T 19-04-2016 AMED_6964 576c28f0b9aed7d81326467ea21091db 397 Gene3D G3DSA:3.90.1150.10 300 395 3.7E-6 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_6964 576c28f0b9aed7d81326467ea21091db 397 SUPERFAMILY SSF53383 61 395 1.37E-29 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6964 576c28f0b9aed7d81326467ea21091db 397 Gene3D G3DSA:3.40.640.10 59 277 1.2E-23 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_6964 576c28f0b9aed7d81326467ea21091db 397 PANTHER PTHR11601:SF31 60 250 5.2E-14 T 19-04-2016 AMED_6964 576c28f0b9aed7d81326467ea21091db 397 PANTHER PTHR11601 60 250 5.2E-14 T 19-04-2016 AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 Gene3D G3DSA:3.40.50.1820 3 250 6.9E-61 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 SUPERFAMILY SSF53474 1 250 9.83E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 Pfam PF12697 Alpha/beta hydrolase family 22 247 4.8E-25 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 PANTHER PTHR10992 3 254 1.5E-53 T 19-04-2016 AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 199 213 1.7E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 1.7E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 101 1.7E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6722 d0e17e8b3731458ac9eb3ad143da801a 254 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 1.7E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 Pfam PF00732 GMC oxidoreductase 2 288 2.7E-92 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 SUPERFAMILY SSF54373 283 460 1.28E-37 T 19-04-2016 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 247 261 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 SUPERFAMILY SSF51905 459 514 2.27E-86 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 SUPERFAMILY SSF51905 1 281 2.27E-86 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 PANTHER PTHR11552 2 521 1.8E-193 T 19-04-2016 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 78 101 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:3.50.50.60 2 119 3.4E-116 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:3.50.50.60 453 512 3.4E-116 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 Gene3D G3DSA:3.50.50.60 180 306 3.4E-116 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 Pfam PF05199 GMC oxidoreductase 377 506 6.4E-33 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_6837 d9873bd916b83b5a23999066dfed39d4 521 PIRSF PIRSF000137 1 519 4.7E-140 T 19-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 AMED_4818 ad01967aa6845587d84155f84648d552 350 Pfam PF12697 Alpha/beta hydrolase family 74 331 3.7E-12 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4818 ad01967aa6845587d84155f84648d552 350 Gene3D G3DSA:3.40.50.1820 266 346 9.1E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4818 ad01967aa6845587d84155f84648d552 350 Gene3D G3DSA:3.40.50.1820 56 188 9.1E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4818 ad01967aa6845587d84155f84648d552 350 SUPERFAMILY SSF53474 33 347 6.98E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 SUPERFAMILY SSF51445 18 332 6.32E-76 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PANTHER PTHR30480 17 329 2.5E-91 T 19-04-2016 AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PANTHER PTHR30480:SF2 17 329 2.5E-91 T 19-04-2016 AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PRINTS PR00133 Glycosyl hydrolase family 3 signature 91 110 2.7E-5 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PRINTS PR00133 Glycosyl hydrolase family 3 signature 169 185 2.7E-5 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 PRINTS PR00133 Glycosyl hydrolase family 3 signature 244 262 2.7E-5 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 Gene3D G3DSA:3.20.20.300 18 332 8.1E-89 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4365 a9aa4436fd804ed9fbcdd978c8cd1b9c 485 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 38 330 1.6E-67 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_1531 84510fee0521979d74affe3a61e87f35 395 PANTHER PTHR33886:SF3 69 388 7.4E-81 T 19-04-2016 AMED_1531 84510fee0521979d74affe3a61e87f35 395 PANTHER PTHR33886 69 388 7.4E-81 T 19-04-2016 AMED_1531 84510fee0521979d74affe3a61e87f35 395 SUPERFAMILY SSF48208 66 393 2.21E-56 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1531 84510fee0521979d74affe3a61e87f35 395 Pfam PF07470 Glycosyl Hydrolase Family 88 51 390 1.4E-74 T 19-04-2016 IPR010905 Glycosyl hydrolase, family 88 AMED_1531 84510fee0521979d74affe3a61e87f35 395 Gene3D G3DSA:1.50.10.10 45 393 1.5E-98 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 Pfam PF13280 WYL domain 140 311 7.7E-30 T 19-04-2016 IPR026881 WYL domain AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 SUPERFAMILY SSF46785 5 62 2.91E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 PIRSF PIRSF016838 2 315 5.5E-21 T 19-04-2016 IPR028349 Protein PafC AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 Pfam PF08279 HTH domain 7 61 8.6E-17 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 Gene3D G3DSA:1.10.10.10 1 64 4.2E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 PANTHER PTHR34580:SF3 7 313 1.1E-36 T 19-04-2016 AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 PANTHER PTHR34580 7 313 1.1E-36 T 19-04-2016 AMED_3179 612ebf903fbb726b1b12d2c4f10f0b57 316 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PANTHER PTHR10520:SF7 2 282 1.0E-127 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 116 143 3.1E-58 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 262 287 3.1E-58 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 240 262 3.1E-58 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 94 116 3.1E-58 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 3.1E-58 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 3.1E-58 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PIRSF PIRSF036480 5 288 1.1E-109 T 19-04-2016 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 SUPERFAMILY SSF55021 7 87 9.99E-15 T 19-04-2016 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 SUPERFAMILY SSF53328 94 288 2.09E-58 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Pfam PF00551 Formyl transferase 94 267 7.5E-38 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 288 47.981 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 PANTHER PTHR10520 2 282 1.0E-127 T 19-04-2016 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 11 288 1.8E-99 T 19-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Gene3D G3DSA:3.40.50.170 93 285 1.1E-53 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_0445 ebfb91f1d7e7aa7b460fcd8aaa83a2e1 288 Gene3D G3DSA:3.30.70.260 4 82 9.6E-19 T 19-04-2016 AMED_3346 f01eca66165294caee7c11ae0971c021 331 SUPERFAMILY SSF51445 24 284 4.79E-12 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3346 f01eca66165294caee7c11ae0971c021 331 Gene3D G3DSA:3.20.20.80 143 279 1.2E-6 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6532 1da51d01f7d30e623d844f775dda024a 203 SUPERFAMILY SSF52317 6 187 6.02E-46 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6532 1da51d01f7d30e623d844f775dda024a 203 PANTHER PTHR11019:SF124 6 159 7.6E-27 T 19-04-2016 AMED_6532 1da51d01f7d30e623d844f775dda024a 203 Pfam PF01965 DJ-1/PfpI family 6 169 2.2E-23 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_6532 1da51d01f7d30e623d844f775dda024a 203 PANTHER PTHR11019 6 159 7.6E-27 T 19-04-2016 AMED_6532 1da51d01f7d30e623d844f775dda024a 203 Gene3D G3DSA:3.40.50.880 6 197 2.0E-52 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6845 9c22e24edfa0169311d6e33ada595a22 156 Pfam PF13474 SnoaL-like domain 41 153 1.6E-8 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6845 9c22e24edfa0169311d6e33ada595a22 156 Gene3D G3DSA:3.10.450.50 26 154 7.0E-31 T 19-04-2016 IPR032710 NTF2-like domain AMED_6845 9c22e24edfa0169311d6e33ada595a22 156 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 30 153 9.4E-23 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_6845 9c22e24edfa0169311d6e33ada595a22 156 SUPERFAMILY SSF54427 30 153 8.78E-24 T 19-04-2016 IPR032710 NTF2-like domain AMED_3511 4a2e82116c0c35dfe371f312a2352915 309 Pfam PF01435 Peptidase family M48 119 205 2.8E-8 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_3511 4a2e82116c0c35dfe371f312a2352915 309 PANTHER PTHR34978 1 307 5.1E-13 T 19-04-2016 AMED_3511 4a2e82116c0c35dfe371f312a2352915 309 Gene3D G3DSA:3.30.2010.10 126 195 4.9E-13 T 19-04-2016 AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 Pfam PF13452 N-terminal half of MaoC dehydratase 30 159 2.4E-13 T 19-04-2016 AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 SUPERFAMILY SSF54637 32 181 5.77E-20 T 19-04-2016 IPR029069 HotDog domain AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 Gene3D G3DSA:3.10.129.10 204 245 1.0E-27 T 19-04-2016 IPR029069 HotDog domain AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 Gene3D G3DSA:3.10.129.10 278 383 1.0E-27 T 19-04-2016 IPR029069 HotDog domain AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 Gene3D G3DSA:3.10.129.10 30 162 5.2E-14 T 19-04-2016 IPR029069 HotDog domain AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 SUPERFAMILY SSF54637 277 385 3.95E-16 T 19-04-2016 IPR029069 HotDog domain AMED_7162 0b8d6a7235e900f70c757ddce42e8c1f 411 SUPERFAMILY SSF54637 211 244 3.95E-16 T 19-04-2016 IPR029069 HotDog domain AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 Gene3D G3DSA:2.60.120.10 20 87 9.5E-8 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 Gene3D G3DSA:1.10.10.60 206 249 1.1E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 Gene3D G3DSA:1.10.10.60 145 205 1.3E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 PANTHER PTHR11019:SF53 10 256 2.9E-63 T 19-04-2016 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 Pfam PF12833 Helix-turn-helix domain 175 249 3.3E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 PANTHER PTHR11019 10 256 2.9E-63 T 19-04-2016 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 SMART SM00342 167 249 9.2E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 SUPERFAMILY SSF46689 203 251 6.27E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1293 99af7e8c046f49b899cfa6a51ef2fc3e 256 SUPERFAMILY SSF51182 20 175 8.54E-11 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_2973 d276fa3fdfabb22b1961c496b75d2b7c 2209 PANTHER PTHR33361 469 1147 1.3E-98 T 19-04-2016 AMED_2973 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 24 543 2.0E-150 T 19-04-2016 IPR010281 Protein of unknown function DUF885 AMED_2973 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 1127 1645 4.7E-148 T 19-04-2016 IPR010281 Protein of unknown function DUF885 AMED_2973 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 573 1095 1.2E-152 T 19-04-2016 IPR010281 Protein of unknown function DUF885 AMED_2973 d276fa3fdfabb22b1961c496b75d2b7c 2209 Pfam PF05960 Bacterial protein of unknown function (DUF885) 1678 2195 5.3E-149 T 19-04-2016 IPR010281 Protein of unknown function DUF885 AMED_5540 94a0b9039c5bee6d083215f0a00b1db5 419 Gene3D G3DSA:3.90.550.10 13 267 3.0E-38 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5540 94a0b9039c5bee6d083215f0a00b1db5 419 PANTHER PTHR22916 182 295 1.8E-32 T 19-04-2016 AMED_5540 94a0b9039c5bee6d083215f0a00b1db5 419 PANTHER PTHR22916 13 154 1.8E-32 T 19-04-2016 AMED_5540 94a0b9039c5bee6d083215f0a00b1db5 419 Pfam PF00535 Glycosyl transferase family 2 16 196 2.5E-20 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_5540 94a0b9039c5bee6d083215f0a00b1db5 419 SUPERFAMILY SSF53448 9 266 1.41E-45 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_3292 591691d70c68e27f3137d0c651bb1666 491 SMART SM00458 362 491 2.7E-29 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3292 591691d70c68e27f3137d0c651bb1666 491 Gene3D G3DSA:2.80.10.50 364 490 3.1E-38 T 19-04-2016 AMED_3292 591691d70c68e27f3137d0c651bb1666 491 Pfam PF00652 Ricin-type beta-trefoil lectin domain 362 488 5.3E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3292 591691d70c68e27f3137d0c651bb1666 491 SUPERFAMILY SSF50370 360 490 1.34E-37 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3292 591691d70c68e27f3137d0c651bb1666 491 Gene3D G3DSA:2.60.120.200 40 355 2.8E-127 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3292 591691d70c68e27f3137d0c651bb1666 491 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 41 353 7.5E-133 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_3292 591691d70c68e27f3137d0c651bb1666 491 SUPERFAMILY SSF49899 40 355 5.54E-95 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3292 591691d70c68e27f3137d0c651bb1666 491 PANTHER PTHR39447:SF2 6 355 4.9E-95 T 19-04-2016 AMED_3292 591691d70c68e27f3137d0c651bb1666 491 PANTHER PTHR39447 6 355 4.9E-95 T 19-04-2016 AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 Gene3D G3DSA:3.40.50.1820 8 270 5.9E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 PANTHER PTHR10992 10 270 2.2E-38 T 19-04-2016 AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 Pfam PF12697 Alpha/beta hydrolase family 26 260 1.7E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 1.1E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 214 228 1.1E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.1E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0452 6d667e1364f50539466553cd03bfdd5e 271 SUPERFAMILY SSF53474 4 269 2.45E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7639 cbed2b75cc201ac182c99260eb0a5e76 308 SUPERFAMILY SSF56112 28 305 4.59E-46 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_7639 cbed2b75cc201ac182c99260eb0a5e76 308 Pfam PF01636 Phosphotransferase enzyme family 42 284 1.3E-25 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_7639 cbed2b75cc201ac182c99260eb0a5e76 308 PANTHER PTHR21064 9 284 5.1E-22 T 19-04-2016 AMED_7639 cbed2b75cc201ac182c99260eb0a5e76 308 Gene3D G3DSA:3.30.200.20 28 112 5.7E-6 T 19-04-2016 AMED_7639 cbed2b75cc201ac182c99260eb0a5e76 308 Gene3D G3DSA:3.90.1200.10 129 285 5.2E-24 T 19-04-2016 AMED_5337 4d8a769abab35f7bc2109b38aeda1e18 210 Gene3D G3DSA:1.10.357.10 20 209 2.9E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5337 4d8a769abab35f7bc2109b38aeda1e18 210 SUPERFAMILY SSF46689 19 100 1.08E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5337 4d8a769abab35f7bc2109b38aeda1e18 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 37 77 8.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5337 4d8a769abab35f7bc2109b38aeda1e18 210 PANTHER PTHR30055 17 205 7.6E-14 T 19-04-2016 AMED_5337 4d8a769abab35f7bc2109b38aeda1e18 210 SUPERFAMILY SSF48498 133 209 2.57E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2190 2a3bbd5cbebd62bdc8ec9939447d66e2 330 SUPERFAMILY SSF53613 5 305 2.65E-52 T 19-04-2016 IPR029056 Ribokinase-like AMED_2190 2a3bbd5cbebd62bdc8ec9939447d66e2 330 PANTHER PTHR10584 6 311 1.6E-114 T 19-04-2016 AMED_2190 2a3bbd5cbebd62bdc8ec9939447d66e2 330 Pfam PF00294 pfkB family carbohydrate kinase 34 299 9.3E-42 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_2190 2a3bbd5cbebd62bdc8ec9939447d66e2 330 PANTHER PTHR10584:SF15 6 311 1.6E-114 T 19-04-2016 AMED_2190 2a3bbd5cbebd62bdc8ec9939447d66e2 330 Gene3D G3DSA:3.40.1190.20 5 311 2.0E-44 T 19-04-2016 IPR029056 Ribokinase-like AMED_2190 2a3bbd5cbebd62bdc8ec9939447d66e2 330 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 75 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_1461 2619af987dc708aff66e15d1443fd49b 294 PANTHER PTHR30096 28 291 5.1E-77 T 19-04-2016 AMED_1461 2619af987dc708aff66e15d1443fd49b 294 Gene3D G3DSA:3.40.830.10 42 286 8.9E-77 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_1461 2619af987dc708aff66e15d1443fd49b 294 PIRSF PIRSF006157 41 294 2.7E-72 T 19-04-2016 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type GO:0008270|GO:0016701|GO:0055114 AMED_1461 2619af987dc708aff66e15d1443fd49b 294 SUPERFAMILY SSF53213 45 283 3.14E-71 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_1461 2619af987dc708aff66e15d1443fd49b 294 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 73 271 3.1E-38 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_4884 dd826957a5b436d86521344a1b4f8190 326 PANTHER PTHR34580 4 321 2.8E-89 T 19-04-2016 AMED_4884 dd826957a5b436d86521344a1b4f8190 326 PIRSF PIRSF016838 1 323 1.1E-118 T 19-04-2016 IPR028349 Protein PafC AMED_4884 dd826957a5b436d86521344a1b4f8190 326 PANTHER PTHR34580:SF2 4 321 2.8E-89 T 19-04-2016 AMED_4884 dd826957a5b436d86521344a1b4f8190 326 Pfam PF13280 WYL domain 147 313 9.5E-32 T 19-04-2016 IPR026881 WYL domain AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 Pfam PF00331 Glycosyl hydrolase family 10 43 348 1.5E-99 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 Gene3D G3DSA:3.20.20.80 43 352 2.3E-104 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 116 128 2.0E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 158 169 2.0E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 231 243 2.0E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 PRINTS PR00134 Glycosyl hydrolase family 10 signature 202 213 2.0E-15 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 SMART SM00633 85 350 5.0E-107 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 PANTHER PTHR31490 41 345 1.1E-112 T 19-04-2016 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 Gene3D G3DSA:2.80.10.50 356 484 2.2E-39 T 19-04-2016 AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 SUPERFAMILY SSF51445 43 350 1.24E-106 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 SUPERFAMILY SSF50370 363 484 1.35E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 Pfam PF00652 Ricin-type beta-trefoil lectin domain 359 482 2.6E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_6432 8ad2b8e183a98949a8b35ba25241b3f5 485 SMART SM00458 358 485 2.2E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 Gene3D G3DSA:3.20.20.140 63 267 1.3E-45 T 19-04-2016 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 Gene3D G3DSA:3.20.20.140 328 402 1.3E-45 T 19-04-2016 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 SUPERFAMILY SSF51338 2 54 1.79E-17 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 SUPERFAMILY SSF51338 425 485 1.79E-17 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 Gene3D G3DSA:2.30.40.10 2 62 2.6E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 Pfam PF07969 Amidohydrolase family 44 470 4.5E-13 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 PANTHER PTHR11647 2 63 3.1E-12 T 19-04-2016 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 Gene3D G3DSA:2.30.40.10 403 486 5.0E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 SUPERFAMILY SSF51556 322 414 1.53E-29 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3456 a7c72951c8d4d62cfb5e82a020993d6f 490 SUPERFAMILY SSF51556 55 275 1.53E-29 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_0169 64251d4162a4108c3e88f69e7dfb0438 216 SUPERFAMILY SSF63817 68 201 5.89E-12 T 19-04-2016 IPR023365 Sortase domain AMED_0169 64251d4162a4108c3e88f69e7dfb0438 216 PANTHER PTHR33393 44 213 5.3E-30 T 19-04-2016 AMED_0169 64251d4162a4108c3e88f69e7dfb0438 216 PANTHER PTHR33393:SF4 44 213 5.3E-30 T 19-04-2016 AMED_0169 64251d4162a4108c3e88f69e7dfb0438 216 Pfam PF04203 Sortase family 72 211 4.0E-13 T 19-04-2016 IPR005754 Sortase family AMED_5344 992e1753046b5775d5affefcf2b1b986 335 SUPERFAMILY SSF46785 8 64 3.81E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Pfam PF01037 Lrp/AsnC ligand binding domain 244 304 7.9E-7 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Pfam PF01037 Lrp/AsnC ligand binding domain 73 140 4.1E-8 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 SUPERFAMILY SSF54909 70 151 4.16E-10 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5344 992e1753046b5775d5affefcf2b1b986 335 PANTHER PTHR30154 1 168 1.3E-20 T 19-04-2016 AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Pfam PF13404 AsnC-type helix-turn-helix domain 8 47 3.7E-11 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:1.10.10.10 8 51 1.1E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 SMART SM00344 8 113 0.0022 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_5344 992e1753046b5775d5affefcf2b1b986 335 SMART SM00344 179 278 0.003 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:1.10.10.10 180 249 2.1E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:3.30.70.920 250 307 1.3E-5 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 Gene3D G3DSA:3.30.70.920 71 142 1.5E-11 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_5344 992e1753046b5775d5affefcf2b1b986 335 SUPERFAMILY SSF54909 232 311 6.57E-7 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_1643 a3c0fc827b70264b83720657b09f4bf0 152 SUPERFAMILY SSF54427 2 144 5.93E-68 T 19-04-2016 IPR032710 NTF2-like domain AMED_1643 a3c0fc827b70264b83720657b09f4bf0 152 PANTHER PTHR31757:SF0 1 152 4.7E-70 T 19-04-2016 AMED_1643 a3c0fc827b70264b83720657b09f4bf0 152 Pfam PF07080 Protein of unknown function (DUF1348) 4 141 1.2E-65 T 19-04-2016 IPR009783 Protein of unknown function DUF1348 AMED_1643 a3c0fc827b70264b83720657b09f4bf0 152 PANTHER PTHR31757 1 152 4.7E-70 T 19-04-2016 AMED_1643 a3c0fc827b70264b83720657b09f4bf0 152 Gene3D G3DSA:3.10.450.50 12 141 3.4E-63 T 19-04-2016 IPR032710 NTF2-like domain AMED_9027 412a151a01b0c272516fdfeae48146fa 532 PANTHER PTHR24220:SF459 3 282 2.0E-124 T 19-04-2016 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 PANTHER PTHR24220:SF459 301 408 2.0E-124 T 19-04-2016 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 SMART SM00382 28 219 1.7E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9027 412a151a01b0c272516fdfeae48146fa 532 SMART SM00382 310 491 2.0E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9027 412a151a01b0c272516fdfeae48146fa 532 Gene3D G3DSA:3.40.50.300 1 232 1.0E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9027 412a151a01b0c272516fdfeae48146fa 532 PANTHER PTHR24220 3 282 2.0E-124 T 19-04-2016 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 PANTHER PTHR24220 301 408 2.0E-124 T 19-04-2016 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 Pfam PF00005 ABC transporter 19 170 6.0E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 Pfam PF00005 ABC transporter 302 442 2.9E-19 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9027 412a151a01b0c272516fdfeae48146fa 532 Gene3D G3DSA:3.40.50.300 283 502 3.5E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9027 412a151a01b0c272516fdfeae48146fa 532 SUPERFAMILY SSF52540 279 502 1.14E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9027 412a151a01b0c272516fdfeae48146fa 532 SUPERFAMILY SSF52540 1 232 5.11E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4116 2d391c27b94539a270c537208781dc41 265 Pfam PF09339 IclR helix-turn-helix domain 26 75 5.6E-16 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_4116 2d391c27b94539a270c537208781dc41 265 Gene3D G3DSA:3.30.450.40 93 262 5.7E-45 T 19-04-2016 IPR029016 GAF domain-like AMED_4116 2d391c27b94539a270c537208781dc41 265 PANTHER PTHR30136:SF16 1 262 1.0E-85 T 19-04-2016 AMED_4116 2d391c27b94539a270c537208781dc41 265 SMART SM00346 23 112 6.3E-25 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_4116 2d391c27b94539a270c537208781dc41 265 Gene3D G3DSA:1.10.10.10 24 85 7.9E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4116 2d391c27b94539a270c537208781dc41 265 PANTHER PTHR30136 1 262 1.0E-85 T 19-04-2016 AMED_4116 2d391c27b94539a270c537208781dc41 265 SUPERFAMILY SSF46785 26 94 1.93E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4116 2d391c27b94539a270c537208781dc41 265 SUPERFAMILY SSF55781 87 263 1.18E-41 T 19-04-2016 IPR029016 GAF domain-like AMED_4116 2d391c27b94539a270c537208781dc41 265 Pfam PF01614 Bacterial transcriptional regulator 142 260 4.6E-22 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_6470 91bd1fab60325422df0973d4082d2670 552 PANTHER PTHR36837:SF2 2 551 4.8E-216 T 19-04-2016 AMED_6470 91bd1fab60325422df0973d4082d2670 552 Gene3D G3DSA:3.40.50.1820 182 523 2.0E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6470 91bd1fab60325422df0973d4082d2670 552 PANTHER PTHR36837 2 551 4.8E-216 T 19-04-2016 AMED_6470 91bd1fab60325422df0973d4082d2670 552 SUPERFAMILY SSF53474 191 478 8.39E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6470 91bd1fab60325422df0973d4082d2670 552 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 69 236 3.1E-55 T 19-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- AMED_5639 874baee3754b58513fb9beab378915c0 228 Gene3D G3DSA:3.40.50.1820 1 225 1.3E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5639 874baee3754b58513fb9beab378915c0 228 PANTHER PTHR10992 1 226 1.7E-18 T 19-04-2016 AMED_5639 874baee3754b58513fb9beab378915c0 228 Pfam PF12697 Alpha/beta hydrolase family 1 213 6.4E-14 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5639 874baee3754b58513fb9beab378915c0 228 SUPERFAMILY SSF53474 1 223 6.85E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1597 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:1.20.1610.10 461 639 3.2E-42 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 Pfam PF07971 Glycosyl hydrolase family 92 260 774 3.1E-138 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_1597 46989ad78dae30312782df7fe73b1148 795 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 10 775 5.9E-154 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143 404 452 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 SUPERFAMILY SSF48208 290 715 3.85E-18 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143:SF22 470 771 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143 121 388 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143:SF22 10 105 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:3.30.2080.10 640 784 5.3E-47 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143 470 771 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143 10 105 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:2.70.98.10 31 340 5.5E-86 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_1597 46989ad78dae30312782df7fe73b1148 795 Gene3D G3DSA:1.20.1050.60 364 453 3.0E-25 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143:SF22 404 452 1.4E-98 T 19-04-2016 AMED_1597 46989ad78dae30312782df7fe73b1148 795 PANTHER PTHR12143:SF22 121 388 1.4E-98 T 19-04-2016 AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 Pfam PF00467 KOW motif 5 36 1.8E-9 T 19-04-2016 IPR005824 KOW AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 104 1.6E-25 T 19-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 98 21.76 T 19-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 104 3.2E-37 T 19-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 PANTHER PTHR12903 1 104 1.3E-41 T 19-04-2016 AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 SUPERFAMILY SSF50104 1 101 1.13E-31 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 SMART SM00739 2 29 1.6E-5 T 19-04-2016 IPR005824 KOW AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 19-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0688 28821550b558c6aa5cf6a7735b1a5b00 104 Gene3D G3DSA:2.30.30.30 1 93 1.1E-27 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMED_4892 b9162422556df865b44a0a4923a91c83 411 Pfam PF00756 Putative esterase 170 303 2.8E-15 T 19-04-2016 IPR000801 Putative esterase AMED_4892 b9162422556df865b44a0a4923a91c83 411 PANTHER PTHR10907:SF33 175 303 4.2E-21 T 19-04-2016 AMED_4892 b9162422556df865b44a0a4923a91c83 411 Gene3D G3DSA:3.40.50.1820 150 408 4.7E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4892 b9162422556df865b44a0a4923a91c83 411 SUPERFAMILY SSF53474 170 402 2.05E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4892 b9162422556df865b44a0a4923a91c83 411 PANTHER PTHR10907 175 303 4.2E-21 T 19-04-2016 AMED_4074 d02a48757ad1d4a53bc559df75a4eec1 320 Gene3D G3DSA:1.10.600.10 16 305 3.8E-79 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_4074 d02a48757ad1d4a53bc559df75a4eec1 320 SUPERFAMILY SSF48576 19 305 3.31E-73 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_4074 d02a48757ad1d4a53bc559df75a4eec1 320 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 174 199 - T 19-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 AMED_4074 d02a48757ad1d4a53bc559df75a4eec1 320 PANTHER PTHR31480 1 317 4.7E-82 T 19-04-2016 AMED_4074 d02a48757ad1d4a53bc559df75a4eec1 320 Pfam PF00494 Squalene/phytoene synthase 29 290 7.1E-65 T 19-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 Gene3D G3DSA:3.40.50.720 53 286 2.9E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 PANTHER PTHR11092:SF0 48 353 1.2E-106 T 19-04-2016 AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 56 344 1.0E-83 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 PANTHER PTHR11092 48 353 1.2E-106 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 Pfam PF08338 Domain of unknown function (DUF1731) 299 347 8.0E-14 T 19-04-2016 IPR013549 Domain of unknown function DUF1731 AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 SUPERFAMILY SSF51735 51 303 2.78E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7380 8e41c6a49ab584ca387375005bb6eae7 363 Pfam PF01370 NAD dependent epimerase/dehydratase family 57 263 2.0E-11 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 Gene3D G3DSA:3.40.710.10 281 729 2.7E-72 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 PANTHER PTHR32282:SF8 42 783 2.4E-114 T 19-04-2016 AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 PANTHER PTHR32282 42 783 2.4E-114 T 19-04-2016 AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 Pfam PF00905 Penicillin binding protein transpeptidase domain 371 648 8.7E-19 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 SUPERFAMILY SSF56601 312 696 4.88E-64 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 SUPERFAMILY SSF56601 264 283 4.88E-64 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 Pfam PF00912 Transglycosylase 119 279 4.2E-48 T 19-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 Gene3D G3DSA:1.10.3810.10 119 280 1.8E-55 T 19-04-2016 AMED_9288 17f0f27dd256c05fac64ee326f71a84d 784 SUPERFAMILY SSF53955 98 296 7.59E-56 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 Pfam PF03704 Bacterial transcriptional activator domain 74 218 2.1E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 SUPERFAMILY SSF48452 69 222 1.71E-31 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 SMART SM01043 74 218 3.5E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 1 67 2.6E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 SUPERFAMILY SSF46894 1 67 3.4E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 Gene3D G3DSA:1.10.10.10 1 70 7.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4046 6c6caab4fd7b0ece67ba6f67519b833f 225 PANTHER PTHR35807 1 225 2.0E-43 T 19-04-2016 AMED_6230 80f5d22367374054b928f981335693db 555 PANTHER PTHR24095:SF173 15 478 7.9E-95 T 19-04-2016 AMED_6230 80f5d22367374054b928f981335693db 555 Pfam PF00550 Phosphopantetheine attachment site 476 534 3.0E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6230 80f5d22367374054b928f981335693db 555 Pfam PF00668 Condensation domain 15 305 1.8E-66 T 19-04-2016 IPR001242 Condensation domain AMED_6230 80f5d22367374054b928f981335693db 555 Pfam PF13745 HxxPF-repeated domain 327 419 4.2E-17 T 19-04-2016 AMED_6230 80f5d22367374054b928f981335693db 555 SUPERFAMILY SSF52777 18 187 2.33E-50 T 19-04-2016 AMED_6230 80f5d22367374054b928f981335693db 555 SUPERFAMILY SSF47336 465 538 3.01E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6230 80f5d22367374054b928f981335693db 555 SUPERFAMILY SSF52777 196 436 8.12E-57 T 19-04-2016 AMED_6230 80f5d22367374054b928f981335693db 555 Gene3D G3DSA:1.10.1200.10 462 540 3.2E-21 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6230 80f5d22367374054b928f981335693db 555 SMART SM00823 Phosphopantetheine attachment site 473 542 0.0072 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_6230 80f5d22367374054b928f981335693db 555 PANTHER PTHR24095 15 478 7.9E-95 T 19-04-2016 AMED_8539 94020911c530c40a754b32bece6b6fda 549 Gene3D G3DSA:3.40.50.200 201 545 2.1E-83 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8539 94020911c530c40a754b32bece6b6fda 549 SUPERFAMILY SSF52743 203 540 1.09E-51 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8539 94020911c530c40a754b32bece6b6fda 549 SMART SM00944 42 185 2.6E-46 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_8539 94020911c530c40a754b32bece6b6fda 549 Pfam PF09286 Pro-kumamolisin, activation domain 46 184 3.1E-30 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_8539 94020911c530c40a754b32bece6b6fda 549 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 465 475 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_8539 94020911c530c40a754b32bece6b6fda 549 PANTHER PTHR14218 6 548 2.2E-74 T 19-04-2016 AMED_8539 94020911c530c40a754b32bece6b6fda 549 PANTHER PTHR14218:SF15 6 548 2.2E-74 T 19-04-2016 AMED_8539 94020911c530c40a754b32bece6b6fda 549 SUPERFAMILY SSF54897 44 188 1.02E-38 T 19-04-2016 IPR009020 Proteinase inhibitor, propeptide AMED_8598 9b79c448df6bfd7b9b2c84302a03a984 1029 Pfam PF11856 Protein of unknown function (DUF3376) 318 767 1.6E-28 T 19-04-2016 IPR024282 Domain of unknown function DUF3376 AMED_8598 9b79c448df6bfd7b9b2c84302a03a984 1029 TIGRFAM TIGR03607 TIGR03607: patatin-related protein 11 673 3.1E-108 T 19-04-2016 IPR019894 Patatin-related protein AMED_8598 9b79c448df6bfd7b9b2c84302a03a984 1029 SUPERFAMILY SSF52151 151 280 1.94E-15 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_8598 9b79c448df6bfd7b9b2c84302a03a984 1029 SUPERFAMILY SSF52151 20 111 1.94E-15 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_8598 9b79c448df6bfd7b9b2c84302a03a984 1029 Pfam PF01734 Patatin-like phospholipase 18 257 5.0E-15 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 Gene3D G3DSA:3.30.1440.10 9 185 1.8E-72 T 19-04-2016 IPR022803 Ribosomal protein L5 domain AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 PIRSF PIRSF002161 4 187 6.2E-61 T 19-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 SUPERFAMILY SSF55282 10 185 6.12E-72 T 19-04-2016 IPR022803 Ribosomal protein L5 domain AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 Pfam PF00281 Ribosomal protein L5 31 87 5.9E-26 T 19-04-2016 IPR031310 Ribosomal protein L5, N-terminal AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 PANTHER PTHR11994 3 186 1.8E-90 T 19-04-2016 AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 8 186 42.262 T 19-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0689 d8ec78bd7339f2589f623a24336acbb6 187 Pfam PF00673 ribosomal L5P family C-terminus 91 184 2.8E-38 T 19-04-2016 IPR031309 Ribosomal protein L5, C-terminal AMED_7182 14521343eefaada73b95744aee9ff967 534 PANTHER PTHR11632:SF59 455 533 4.0E-124 T 19-04-2016 AMED_7182 14521343eefaada73b95744aee9ff967 534 PANTHER PTHR11632:SF59 165 424 4.0E-124 T 19-04-2016 AMED_7182 14521343eefaada73b95744aee9ff967 534 PANTHER PTHR11632:SF59 1 132 4.0E-124 T 19-04-2016 AMED_7182 14521343eefaada73b95744aee9ff967 534 Pfam PF00890 FAD binding domain 9 514 5.0E-80 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_7182 14521343eefaada73b95744aee9ff967 534 SUPERFAMILY SSF56425 447 474 8.22E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_7182 14521343eefaada73b95744aee9ff967 534 SUPERFAMILY SSF56425 287 414 8.22E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_7182 14521343eefaada73b95744aee9ff967 534 Gene3D G3DSA:3.50.50.60 470 531 3.7E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7182 14521343eefaada73b95744aee9ff967 534 Gene3D G3DSA:3.50.50.60 3 278 3.7E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7182 14521343eefaada73b95744aee9ff967 534 PANTHER PTHR11632 455 533 4.0E-124 T 19-04-2016 AMED_7182 14521343eefaada73b95744aee9ff967 534 PANTHER PTHR11632 165 424 4.0E-124 T 19-04-2016 AMED_7182 14521343eefaada73b95744aee9ff967 534 PANTHER PTHR11632 1 132 4.0E-124 T 19-04-2016 AMED_7182 14521343eefaada73b95744aee9ff967 534 Gene3D G3DSA:3.90.700.10 287 415 4.1E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_7182 14521343eefaada73b95744aee9ff967 534 Gene3D G3DSA:3.90.700.10 448 464 4.1E-32 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_7182 14521343eefaada73b95744aee9ff967 534 SUPERFAMILY SSF51905 468 532 2.67E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7182 14521343eefaada73b95744aee9ff967 534 SUPERFAMILY SSF51905 1 286 2.67E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2857 e8843abf9f61f23ffca899f79f603b57 116 Pfam PF03793 PASTA domain 44 109 4.6E-8 T 19-04-2016 IPR005543 PASTA domain AMED_4801 2b33f8378f87139b7c90eeb0a193fd14 743 Pfam PF04738 Lantibiotic dehydratase, C terminus 57 697 2.5E-41 T 19-04-2016 IPR006827 Lantibiotic dehydratase, C-terminal AMED_8093 4f4e71aae3397b015b38cf3ae8b6f5de 270 PANTHER PTHR36839:SF1 6 264 1.1E-93 T 19-04-2016 AMED_8093 4f4e71aae3397b015b38cf3ae8b6f5de 270 Gene3D G3DSA:3.60.15.10 61 241 2.7E-29 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8093 4f4e71aae3397b015b38cf3ae8b6f5de 270 SUPERFAMILY SSF56281 57 246 8.26E-25 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8093 4f4e71aae3397b015b38cf3ae8b6f5de 270 SMART SM00849 73 242 9.4E-6 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8093 4f4e71aae3397b015b38cf3ae8b6f5de 270 PANTHER PTHR36839 6 264 1.1E-93 T 19-04-2016 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 Gene3D G3DSA:3.40.50.1820 14 283 1.6E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PANTHER PTHR10992:SF701 19 146 4.5E-38 T 19-04-2016 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PANTHER PTHR10992:SF701 174 283 4.5E-38 T 19-04-2016 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PANTHER PTHR10992 19 146 4.5E-38 T 19-04-2016 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PANTHER PTHR10992 174 283 4.5E-38 T 19-04-2016 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 SUPERFAMILY SSF53474 14 284 7.97E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 2.2E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 2.2E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 61 76 2.2E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 233 247 2.2E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00412 Epoxide hydrolase signature 120 133 5.3E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00412 Epoxide hydrolase signature 61 76 5.3E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 PRINTS PR00412 Epoxide hydrolase signature 263 285 5.3E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3884 66468daba5a94f55eec8f12c8d7064dc 286 Pfam PF00561 alpha/beta hydrolase fold 37 135 2.2E-16 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 SUPERFAMILY SSF56176 17 209 1.12E-59 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 Gene3D G3DSA:3.30.43.10 31 99 4.1E-16 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 Gene3D G3DSA:3.30.465.10 100 209 1.6E-20 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 Pfam PF01565 FAD binding domain 43 178 6.7E-37 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 Pfam PF08031 Berberine and berberine like 418 462 1.7E-12 T 19-04-2016 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 43 76 - T 19-04-2016 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 PANTHER PTHR11748 8 465 1.2E-94 T 19-04-2016 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 PANTHER PTHR11748:SF86 8 465 1.2E-94 T 19-04-2016 AMED_2409 3d04190c85751b3d1586219b20a7e3d4 465 SUPERFAMILY SSF55103 189 456 3.05E-6 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_2428 59297da51da534744af7f6d6808e4d10 444 PANTHER PTHR33371:SF7 1 358 8.6E-93 T 19-04-2016 AMED_2428 59297da51da534744af7f6d6808e4d10 444 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 15 298 2.1E-59 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2428 59297da51da534744af7f6d6808e4d10 444 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 147 368 7.2E-70 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_2428 59297da51da534744af7f6d6808e4d10 444 PANTHER PTHR33371 1 358 8.6E-93 T 19-04-2016 AMED_2428 59297da51da534744af7f6d6808e4d10 444 Pfam PF02470 MlaD protein 43 116 1.7E-10 T 19-04-2016 IPR003399 Mce/MlaD AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF82282 10 392 1.83E-115 T 19-04-2016 IPR003726 Homocysteine-binding domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 TIGRFAM TIGR02082 metH: methionine synthase 15 1173 0.0 T 19-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 PIRSF PIRSF000381 5 1176 0.0 T 19-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF00809 Pterin binding enzyme 353 591 5.0E-50 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF51717 349 623 1.2E-81 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 934 1189 2.8E-97 T 19-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:1.10.1240.10 642 727 1.2E-37 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 PANTHER PTHR21091 6 391 7.7E-137 T 19-04-2016 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.20.20.330 7 356 4.7E-122 T 19-04-2016 IPR003726 Homocysteine-binding domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02607 B12 binding domain 651 723 3.7E-26 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.20.20.20 357 629 7.6E-104 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF47644 643 729 2.09E-28 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 SMART SM01018 647 730 1.5E-44 T 19-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.10.196.10 953 1208 1.7E-85 T 19-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF56507 900 1208 6.41E-102 T 19-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 SUPERFAMILY SSF52242 742 893 1.31E-41 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02574 Homocysteine S-methyltransferase 21 317 4.9E-87 T 19-04-2016 IPR003726 Homocysteine-binding domain AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Pfam PF02310 B12 binding domain 747 838 5.1E-18 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 PANTHER PTHR21091:SF112 6 391 7.7E-137 T 19-04-2016 AMED_5176 1a84cd3c6e83b3a81e1ba638154905b7 1209 Gene3D G3DSA:3.40.50.280 744 894 1.6E-58 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0062 fa83e32c868db8fe80cb94dac0759e9f 346 PIRSF PIRSF001434 1 346 1.0E-93 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_0062 fa83e32c868db8fe80cb94dac0759e9f 346 Gene3D G3DSA:3.90.1150.10 239 344 3.3E-22 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0062 fa83e32c868db8fe80cb94dac0759e9f 346 Gene3D G3DSA:3.40.640.10 6 237 6.4E-57 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0062 fa83e32c868db8fe80cb94dac0759e9f 346 PANTHER PTHR11808 3 345 3.2E-102 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_0062 fa83e32c868db8fe80cb94dac0759e9f 346 SUPERFAMILY SSF53383 45 344 2.14E-67 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0062 fa83e32c868db8fe80cb94dac0759e9f 346 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 344 5.3E-74 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 SMART SM00421 151 208 1.2E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 207 1.5E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 SUPERFAMILY SSF46894 143 214 2.28E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 SMART SM00448 2 115 1.3E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 PANTHER PTHR26402:SF151 2 214 1.2E-73 T 19-04-2016 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 Gene3D G3DSA:3.40.50.2300 3 153 8.8E-38 T 19-04-2016 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 Pfam PF00072 Response regulator receiver domain 4 114 2.9E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 1.2E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 1.2E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 1.2E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 PANTHER PTHR26402 2 214 1.2E-73 T 19-04-2016 AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 Gene3D G3DSA:1.10.10.10 154 213 1.1E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6350 af6afafabfbe98a1bdf4e53d71a9929a 216 SUPERFAMILY SSF52172 3 131 1.39E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PANTHER PTHR24322 11 181 1.6E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PANTHER PTHR24322:SF328 11 181 1.6E-48 T 19-04-2016 AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 4.7E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 4.7E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.7E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 4.7E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.7E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.7E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 Gene3D G3DSA:3.40.50.720 2 242 2.3E-82 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.1E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 241 2.6E-63 T 19-04-2016 AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 1.3E-6 T 19-04-2016 AMED_5338 6ee334e17e693c03b038017b7cc9f443 247 SUPERFAMILY SSF51735 6 242 1.33E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2925 30fe69a80a08c14a0182c485af217096 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.7E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2925 30fe69a80a08c14a0182c485af217096 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.7E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2925 30fe69a80a08c14a0182c485af217096 192 Gene3D G3DSA:1.10.357.10 2 151 7.3E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2925 30fe69a80a08c14a0182c485af217096 192 SUPERFAMILY SSF46689 2 74 3.33E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2925 30fe69a80a08c14a0182c485af217096 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 1.4E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2925 30fe69a80a08c14a0182c485af217096 192 PANTHER PTHR30055 1 136 4.3E-16 T 19-04-2016 AMED_7720 e44449d6c7643956231861fa12a05a49 214 SUPERFAMILY SSF51569 4 206 2.01E-49 T 19-04-2016 AMED_7720 e44449d6c7643956231861fa12a05a49 214 Pfam PF01081 KDPG and KHG aldolase 6 183 1.4E-37 T 19-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMED_7720 e44449d6c7643956231861fa12a05a49 214 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 186 6.0E-48 T 19-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMED_7720 e44449d6c7643956231861fa12a05a49 214 PANTHER PTHR30246:SF4 3 214 3.1E-56 T 19-04-2016 AMED_7720 e44449d6c7643956231861fa12a05a49 214 PANTHER PTHR30246 3 214 3.1E-56 T 19-04-2016 AMED_7720 e44449d6c7643956231861fa12a05a49 214 Gene3D G3DSA:3.20.20.70 3 209 3.6E-60 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1532 5aac43b769e173806ddeed4a120784e1 590 Pfam PF00754 F5/8 type C domain 445 562 8.9E-12 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_1532 5aac43b769e173806ddeed4a120784e1 590 Gene3D G3DSA:3.20.20.80 31 319 2.4E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1532 5aac43b769e173806ddeed4a120784e1 590 SUPERFAMILY SSF51445 32 278 8.43E-24 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1532 5aac43b769e173806ddeed4a120784e1 590 SMART SM00812 21 386 6.8E-5 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_1532 5aac43b769e173806ddeed4a120784e1 590 Pfam PF01120 Alpha-L-fucosidase 72 240 2.9E-11 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_1532 5aac43b769e173806ddeed4a120784e1 590 Gene3D G3DSA:2.60.120.260 443 564 8.1E-18 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1532 5aac43b769e173806ddeed4a120784e1 590 SUPERFAMILY SSF49785 443 563 2.34E-15 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3237 bb39927297197b2f5df7c2587c092695 117 Gene3D G3DSA:3.10.180.10 11 116 8.4E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3237 bb39927297197b2f5df7c2587c092695 117 SUPERFAMILY SSF54593 4 116 7.52E-22 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 Gene3D G3DSA:2.40.110.10 192 282 4.0E-17 T 19-04-2016 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 399 418 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 Gene3D G3DSA:1.10.540.10 64 184 2.0E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 300 428 8.5E-27 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 PANTHER PTHR10909 3 431 1.7E-165 T 19-04-2016 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 SUPERFAMILY SSF56645 69 291 9.82E-40 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 192 282 4.0E-10 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 74 184 9.5E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 SUPERFAMILY SSF47203 300 428 1.93E-34 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 Gene3D G3DSA:1.20.140.10 283 427 6.1E-38 T 19-04-2016 AMED_7903 fac4afab3e79911a26f6cafe78033ee6 431 PANTHER PTHR10909:SF243 3 431 1.7E-165 T 19-04-2016 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:2.60.120.260 924 1055 2.1E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 PANTHER PTHR34218:SF2 49 344 3.4E-112 T 19-04-2016 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 PANTHER PTHR34218 49 344 3.4E-112 T 19-04-2016 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 SUPERFAMILY SSF56235 104 308 1.49E-104 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 SUPERFAMILY SSF56235 377 836 1.49E-104 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:3.60.20.10 557 797 9.0E-63 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:3.60.20.10 385 462 9.0E-63 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 SUPERFAMILY SSF49785 927 1054 2.91E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:1.10.439.10 102 263 3.3E-37 T 19-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Gene3D G3DSA:2.30.120.10 463 537 7.5E-4 T 19-04-2016 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 PANTHER PTHR34218 381 763 3.4E-112 T 19-04-2016 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 PANTHER PTHR34218:SF2 381 763 3.4E-112 T 19-04-2016 AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Pfam PF00754 F5/8 type C domain 936 1050 9.0E-21 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_0061 7663ccd9ee872d55b1415abfbf82fe37 1056 Pfam PF01804 Penicillin amidase 105 909 1.2E-121 T 19-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 AMED_8558 6c0f0f23d8abb7bedc911f856ca9356a 225 Pfam PF01987 Mitochondrial biogenesis AIM24 10 209 1.7E-50 T 19-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 AMED_8558 6c0f0f23d8abb7bedc911f856ca9356a 225 SUPERFAMILY SSF51219 1 224 6.28E-59 T 19-04-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain AMED_8558 6c0f0f23d8abb7bedc911f856ca9356a 225 PANTHER PTHR31801 5 220 4.8E-52 T 19-04-2016 AMED_8558 6c0f0f23d8abb7bedc911f856ca9356a 225 PANTHER PTHR31801:SF0 5 220 4.8E-52 T 19-04-2016 AMED_8558 6c0f0f23d8abb7bedc911f856ca9356a 225 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 1 224 5.4E-51 T 19-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 AMED_8558 6c0f0f23d8abb7bedc911f856ca9356a 225 Gene3D G3DSA:3.60.160.10 1 224 3.5E-65 T 19-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.4E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.4E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.4E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.4E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.4E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 SUPERFAMILY SSF51735 2 249 2.48E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 3.1E-44 T 19-04-2016 AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PANTHER PTHR24322:SF428 10 142 9.9E-46 T 19-04-2016 AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.6E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 5.6E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.6E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PANTHER PTHR24322:SF428 158 189 9.9E-46 T 19-04-2016 AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 218 0.0011 T 19-04-2016 AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PANTHER PTHR24322 158 189 9.9E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 PANTHER PTHR24322 10 142 9.9E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2424 a35fc7d59a55620e56418ff7122f2feb 288 Gene3D G3DSA:3.40.50.720 2 256 1.0E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 Gene3D G3DSA:3.90.1150.10 273 382 5.0E-13 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 Pfam PF00155 Aminotransferase class I and II 41 381 1.1E-54 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 PANTHER PTHR13693 42 382 1.2E-132 T 19-04-2016 AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 236 245 - T 19-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 Gene3D G3DSA:3.40.640.10 59 272 1.7E-75 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 SUPERFAMILY SSF53383 39 382 5.72E-87 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2057 2505ee5cfaecd32bf5709a2892e3470f 391 PANTHER PTHR13693:SF53 42 382 1.2E-132 T 19-04-2016 AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 PANTHER PTHR24220:SF450 5 220 1.7E-91 T 19-04-2016 AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 PANTHER PTHR24220 5 220 1.7E-91 T 19-04-2016 AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 SUPERFAMILY SSF52540 4 220 6.79E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 Gene3D G3DSA:3.40.50.300 4 221 6.0E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 Pfam PF13732 Domain of unknown function (DUF4162) 213 295 5.7E-9 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 Pfam PF00005 ABC transporter 19 159 3.8E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2105 ccf9d15ed5c08f47871914de6f186a59 302 SMART SM00382 28 207 1.6E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 Pfam PF01266 FAD dependent oxidoreductase 5 366 7.1E-63 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 SUPERFAMILY SSF51905 4 225 2.01E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 SUPERFAMILY SSF51905 327 383 2.01E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.30.9.10 93 145 4.4E-14 T 19-04-2016 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.30.9.10 225 325 4.4E-14 T 19-04-2016 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 PANTHER PTHR13847:SF189 2 383 2.0E-77 T 19-04-2016 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 PANTHER PTHR13847 2 383 2.0E-77 T 19-04-2016 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 SUPERFAMILY SSF54373 225 325 1.24E-11 T 19-04-2016 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.50.50.60 146 224 1.8E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.50.50.60 327 383 1.8E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3232 1341d84eaf7f582f330c32e343b4f668 388 Gene3D G3DSA:3.50.50.60 3 81 1.8E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 Pfam PF01960 ArgJ family 11 386 2.9E-127 T 19-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 386 130.189 T 19-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 PANTHER PTHR23100:SF0 2 386 3.5E-154 T 19-04-2016 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 2 385 2.5E-110 T 19-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 17 384 4.0E-115 T 19-04-2016 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 SUPERFAMILY SSF56266 6 382 1.28E-122 T 19-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 PANTHER PTHR23100 2 386 3.5E-154 T 19-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_6043 589582696536cbc8c77a3ffe6aa32527 386 Gene3D G3DSA:3.60.70.12 3 262 3.7E-89 T 19-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_2260 f4dbb6eda24ae6042001bf0a7463ca27 172 SUPERFAMILY SSF56399 3 168 6.62E-55 T 19-04-2016 AMED_2260 f4dbb6eda24ae6042001bf0a7463ca27 172 PANTHER PTHR12684 2 162 4.0E-51 T 19-04-2016 AMED_2260 f4dbb6eda24ae6042001bf0a7463ca27 172 Hamap MF_00299 Probable RNA 2'-phosphotransferase [kptA]. 1 168 28.335 T 19-04-2016 IPR022928 RNA 2'-phosphotransferase KptA, putative GO:0016773 AMED_2260 f4dbb6eda24ae6042001bf0a7463ca27 172 PANTHER PTHR12684:SF2 2 162 4.0E-51 T 19-04-2016 AMED_2260 f4dbb6eda24ae6042001bf0a7463ca27 172 Pfam PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family 3 161 7.9E-39 T 19-04-2016 IPR002745 Phosphotransferase KptA/Tpt1 GO:0006388|GO:0016772 AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 Gene3D G3DSA:1.10.10.10 15 83 2.0E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 22 267 1.9E-100 T 19-04-2016 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 Pfam PF09339 IclR helix-turn-helix domain 26 77 1.2E-15 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 SUPERFAMILY SSF55781 88 267 7.19E-49 T 19-04-2016 IPR029016 GAF domain-like AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 SUPERFAMILY SSF46785 24 96 3.88E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 SMART SM00346 24 112 2.2E-33 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 PANTHER PTHR30136:SF10 1 269 1.2E-86 T 19-04-2016 AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 Gene3D G3DSA:3.30.450.40 90 268 7.0E-60 T 19-04-2016 IPR029016 GAF domain-like AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 Pfam PF01614 Bacterial transcriptional regulator 139 265 3.2E-39 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_1864 6343ab88296dfc4974413ebcdf2f4a19 277 PANTHER PTHR30136 1 269 1.2E-86 T 19-04-2016 AMED_2496 018cf6f1b4e1ab57d21451be72dcb4e8 146 SUPERFAMILY SSF55961 1 140 1.31E-43 T 19-04-2016 AMED_2496 018cf6f1b4e1ab57d21451be72dcb4e8 146 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 138 6.0E-32 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_2496 018cf6f1b4e1ab57d21451be72dcb4e8 146 PANTHER PTHR36929 1 146 9.5E-28 T 19-04-2016 AMED_2496 018cf6f1b4e1ab57d21451be72dcb4e8 146 Gene3D G3DSA:3.30.530.20 3 140 9.8E-47 T 19-04-2016 IPR023393 START-like domain AMED_2496 018cf6f1b4e1ab57d21451be72dcb4e8 146 PANTHER PTHR36929:SF1 1 146 9.5E-28 T 19-04-2016 AMED_6472 351ed92203eec08fcda275553e294173 501 Pfam PF00501 AMP-binding enzyme 8 410 1.1E-110 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6472 351ed92203eec08fcda275553e294173 501 SUPERFAMILY SSF56801 4 501 4.97E-161 T 19-04-2016 AMED_6472 351ed92203eec08fcda275553e294173 501 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 5.3E-19 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6472 351ed92203eec08fcda275553e294173 501 Gene3D G3DSA:3.40.50.980 4 166 9.5E-38 T 19-04-2016 AMED_6472 351ed92203eec08fcda275553e294173 501 Gene3D G3DSA:2.30.38.10 331 401 3.7E-30 T 19-04-2016 AMED_6472 351ed92203eec08fcda275553e294173 501 PANTHER PTHR24096 2 501 6.1E-175 T 19-04-2016 AMED_6472 351ed92203eec08fcda275553e294173 501 Gene3D G3DSA:3.30.300.30 405 501 2.4E-31 T 19-04-2016 AMED_6472 351ed92203eec08fcda275553e294173 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6472 351ed92203eec08fcda275553e294173 501 Gene3D G3DSA:3.40.50.980 167 330 4.8E-48 T 19-04-2016 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 SUPERFAMILY SSF50465 313 415 1.39E-23 T 19-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PANTHER PTHR23115 55 311 3.5E-64 T 19-04-2016 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PANTHER PTHR23115 8 39 3.5E-64 T 19-04-2016 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 Gene3D G3DSA:3.40.50.300 4 211 1.5E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 SUPERFAMILY SSF50447 217 310 5.2E-20 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 Gene3D G3DSA:2.40.30.10 219 329 4.6E-24 T 19-04-2016 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 SUPERFAMILY SSF52540 3 228 4.57E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 Gene3D G3DSA:2.40.30.10 330 415 2.0E-5 T 19-04-2016 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 101 112 8.1E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 6 19 8.1E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 138 147 8.1E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 65 73 8.1E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 PRINTS PR00315 GTP-binding elongation factor signature 85 95 8.1E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 Pfam PF00009 Elongation factor Tu GTP binding domain 5 203 1.4E-38 T 19-04-2016 AMED_6660 404a5d1c48273b2b9e67a2aee405f9ea 420 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 5 415 3.1E-165 T 19-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 AMED_5992 ae46f72d36d4cd3c89dcccf87e4ca120 307 Gene3D G3DSA:2.40.100.10 141 305 2.6E-34 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_5992 ae46f72d36d4cd3c89dcccf87e4ca120 307 PANTHER PTHR11071:SF165 149 287 2.1E-41 T 19-04-2016 AMED_5992 ae46f72d36d4cd3c89dcccf87e4ca120 307 PANTHER PTHR11071 149 287 2.1E-41 T 19-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 AMED_5992 ae46f72d36d4cd3c89dcccf87e4ca120 307 SUPERFAMILY SSF50891 144 288 1.21E-34 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_5992 ae46f72d36d4cd3c89dcccf87e4ca120 307 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 147 284 2.4E-26 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_2140 8079c424f5caee7100e4e74c6b802323 181 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 57 102 1.4E-7 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_2140 8079c424f5caee7100e4e74c6b802323 181 Pfam PF02627 Carboxymuconolactone decarboxylase family 50 101 1.6E-6 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_2140 8079c424f5caee7100e4e74c6b802323 181 SUPERFAMILY SSF69118 3 178 7.46E-40 T 19-04-2016 IPR029032 AhpD-like AMED_2140 8079c424f5caee7100e4e74c6b802323 181 PANTHER PTHR35446 2 180 1.3E-43 T 19-04-2016 AMED_2140 8079c424f5caee7100e4e74c6b802323 181 PANTHER PTHR35446:SF1 2 180 1.3E-43 T 19-04-2016 AMED_2140 8079c424f5caee7100e4e74c6b802323 181 Gene3D G3DSA:1.20.1290.10 4 86 9.5E-26 T 19-04-2016 IPR029032 AhpD-like AMED_2140 8079c424f5caee7100e4e74c6b802323 181 Gene3D G3DSA:1.20.1290.10 136 176 9.5E-26 T 19-04-2016 IPR029032 AhpD-like AMED_6245 328157fd664ef36c09ba120f115e951b 298 SUPERFAMILY SSF46785 6 111 2.72E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6245 328157fd664ef36c09ba120f115e951b 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.3E-16 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6245 328157fd664ef36c09ba120f115e951b 298 Gene3D G3DSA:3.40.190.10 91 190 3.9E-41 T 19-04-2016 AMED_6245 328157fd664ef36c09ba120f115e951b 298 Gene3D G3DSA:3.40.190.10 191 253 2.5E-5 T 19-04-2016 AMED_6245 328157fd664ef36c09ba120f115e951b 298 PANTHER PTHR30579 1 294 7.2E-110 T 19-04-2016 AMED_6245 328157fd664ef36c09ba120f115e951b 298 PANTHER PTHR30579:SF2 1 294 7.2E-110 T 19-04-2016 AMED_6245 328157fd664ef36c09ba120f115e951b 298 SUPERFAMILY SSF53850 93 291 8.51E-23 T 19-04-2016 AMED_6245 328157fd664ef36c09ba120f115e951b 298 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 8 292 2.9E-105 T 19-04-2016 IPR017685 HTH-type transcriptional regulator ArgP AMED_6245 328157fd664ef36c09ba120f115e951b 298 Gene3D G3DSA:1.10.10.10 7 85 1.9E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6245 328157fd664ef36c09ba120f115e951b 298 Pfam PF03466 LysR substrate binding domain 96 288 1.6E-17 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_0625 5ec7abdc68a748a2fd08177e92893047 441 PANTHER PTHR21337:SF0 28 441 4.0E-180 T 19-04-2016 AMED_0625 5ec7abdc68a748a2fd08177e92893047 441 Pfam PF01474 Class-II DAHP synthetase family 222 437 3.4E-95 T 19-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_0625 5ec7abdc68a748a2fd08177e92893047 441 Pfam PF01474 Class-II DAHP synthetase family 27 189 2.9E-53 T 19-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_0625 5ec7abdc68a748a2fd08177e92893047 441 PANTHER PTHR21337 28 441 4.0E-180 T 19-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_0625 5ec7abdc68a748a2fd08177e92893047 441 SUPERFAMILY SSF51569 13 441 8.42E-162 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 Gene3D G3DSA:3.30.1490.70 311 353 5.4E-11 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 Gene3D G3DSA:3.30.1490.70 161 189 5.4E-11 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 Gene3D G3DSA:3.30.470.30 190 300 6.3E-18 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 Pfam PF13298 DNA polymerase Ligase (LigD) 37 134 4.4E-35 T 19-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 SUPERFAMILY SSF56091 176 351 4.6E-27 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 PANTHER PTHR39465 5 135 1.8E-42 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 PANTHER PTHR39465:SF2 5 135 1.8E-42 T 19-04-2016 AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 5 150 4.8E-48 T 19-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMED_5275 0c655306598d076f42aeb423ac4cdeb9 355 Pfam PF01068 ATP dependent DNA ligase domain 179 350 2.5E-13 T 19-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 AMED_6631 2beaa0dc91624b43f5c99a401fe120a8 105 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 3 91 2.4E-7 T 19-04-2016 IPR022536 ESX-1 secretion-associated protein EspC AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 PIRSF PIRSF005962 17 409 8.8E-112 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 Pfam PF07687 Peptidase dimerisation domain 203 301 8.5E-14 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 30 395 2.3E-97 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 PANTHER PTHR11014 20 409 5.2E-129 T 19-04-2016 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 SUPERFAMILY SSF55031 201 314 8.77E-30 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 Gene3D G3DSA:3.30.70.360 199 315 3.0E-39 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 SUPERFAMILY SSF53187 19 215 1.05E-73 T 19-04-2016 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 SUPERFAMILY SSF53187 316 408 1.05E-73 T 19-04-2016 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 Pfam PF01546 Peptidase family M20/M25/M40 87 404 3.2E-27 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 PANTHER PTHR11014:SF63 20 409 5.2E-129 T 19-04-2016 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 Gene3D G3DSA:3.40.630.10 18 196 2.0E-90 T 19-04-2016 AMED_8963 435ecf5a3304dd1e7c2c2d93530814ce 409 Gene3D G3DSA:3.40.630.10 316 408 2.0E-90 T 19-04-2016 AMED_2273 74e1e96dcbbc956abf4ca3f8911679c9 197 PANTHER PTHR30055 3 186 5.6E-49 T 19-04-2016 AMED_2273 74e1e96dcbbc956abf4ca3f8911679c9 197 PANTHER PTHR30055:SF91 3 186 5.6E-49 T 19-04-2016 AMED_2273 74e1e96dcbbc956abf4ca3f8911679c9 197 SUPERFAMILY SSF46689 3 68 3.18E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2273 74e1e96dcbbc956abf4ca3f8911679c9 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 1.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2273 74e1e96dcbbc956abf4ca3f8911679c9 197 Gene3D G3DSA:1.10.357.10 7 190 5.3E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 Pfam PF00701 Dihydrodipicolinate synthetase family 1 269 1.4E-78 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 124 141 7.7E-28 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 31 52 7.7E-28 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 67 85 7.7E-28 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PRINTS PR00146 Dihydrodipicolinate synthase signature 99 115 7.7E-28 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PANTHER PTHR12128 1 298 2.6E-114 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 SMART SM01130 1 282 1.6E-109 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 129 159 - T 19-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 34 51 - T 19-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 281 55.363 T 19-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 Gene3D G3DSA:3.20.20.70 1 279 4.5E-100 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PANTHER PTHR12128:SF34 1 298 2.6E-114 T 19-04-2016 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 1 274 3.6E-77 T 19-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 PIRSF PIRSF001365 1 284 3.7E-78 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_6300 46488acf896da314fb8acd73d5dd60be 322 SUPERFAMILY SSF51569 1 279 3.66E-90 T 19-04-2016 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624 689 758 7.2E-179 T 19-04-2016 IPR033247 Transketolase family AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624:SF50 689 758 7.2E-179 T 19-04-2016 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624 382 435 7.2E-179 T 19-04-2016 IPR033247 Transketolase family AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624 285 361 7.2E-179 T 19-04-2016 IPR033247 Transketolase family AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 Gene3D G3DSA:3.40.50.920 620 758 4.2E-31 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 SUPERFAMILY SSF52518 6 347 4.77E-63 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 SUPERFAMILY SSF52922 614 758 5.76E-22 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 SUPERFAMILY SSF52518 377 599 3.46E-49 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PIRSF PIRSF000156 5 759 1.5E-68 T 19-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624 457 673 7.2E-179 T 19-04-2016 IPR033247 Transketolase family AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624 2 214 7.2E-179 T 19-04-2016 IPR033247 Transketolase family AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 66 215 1.6E-8 T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624:SF50 457 673 7.2E-179 T 19-04-2016 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624:SF50 382 435 7.2E-179 T 19-04-2016 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624:SF50 2 214 7.2E-179 T 19-04-2016 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 PANTHER PTHR11624:SF50 285 361 7.2E-179 T 19-04-2016 AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 Gene3D G3DSA:3.40.50.970 6 365 1.4E-91 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 SMART SM00861 395 599 5.6E-6 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_1985 a37d2173bbd2557f8fce773b27a12646 759 Gene3D G3DSA:3.40.50.970 378 607 2.5E-68 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0571 77701373eb354343adc3dcd6a99004b1 291 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 9 232 1.7E-86 T 19-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c AMED_0571 77701373eb354343adc3dcd6a99004b1 291 Gene3D G3DSA:3.20.20.30 1 255 8.9E-63 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0571 77701373eb354343adc3dcd6a99004b1 291 PANTHER PTHR30011 21 264 9.9E-47 T 19-04-2016 AMED_0571 77701373eb354343adc3dcd6a99004b1 291 SUPERFAMILY SSF51679 1 286 1.09E-59 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0571 77701373eb354343adc3dcd6a99004b1 291 Pfam PF00296 Luciferase-like monooxygenase 2 242 8.1E-42 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:3.40.50.300 275 314 3.2E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 92 7.9E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 SMART SM01043 100 245 3.7E-51 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 SUPERFAMILY SSF46894 2 92 1.9E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:1.10.10.10 9 92 3.8E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Pfam PF03704 Bacterial transcriptional activator domain 100 245 2.2E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:1.25.40.10 102 224 2.8E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 PRINTS PR00364 Disease resistance protein signature 377 391 8.0E-9 T 19-04-2016 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 PRINTS PR00364 Disease resistance protein signature 304 319 8.0E-9 T 19-04-2016 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 PRINTS PR00364 Disease resistance protein signature 461 475 8.0E-9 T 19-04-2016 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 SMART SM00862 15 93 4.7E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 PANTHER PTHR35807 1 330 4.0E-60 T 19-04-2016 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 SUPERFAMILY SSF52540 266 477 5.01E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Gene3D G3DSA:3.40.50.300 315 406 6.1E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 Pfam PF00931 NB-ARC domain 301 478 4.4E-8 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_5421 0f5acb4b2978ddf34a897f07b285a05a 617 SUPERFAMILY SSF48452 96 265 5.82E-39 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8310 6847b216f27da548e210c194af74bfa4 425 Pfam PF00994 Probable molybdopterin binding domain 197 334 7.6E-18 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8310 6847b216f27da548e210c194af74bfa4 425 PANTHER PTHR10192:SF12 18 423 8.8E-135 T 19-04-2016 AMED_8310 6847b216f27da548e210c194af74bfa4 425 Pfam PF03454 MoeA C-terminal region (domain IV) 349 421 3.1E-21 T 19-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8310 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:2.40.340.10 349 418 5.5E-23 T 19-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8310 6847b216f27da548e210c194af74bfa4 425 PANTHER PTHR10192 18 423 8.8E-135 T 19-04-2016 AMED_8310 6847b216f27da548e210c194af74bfa4 425 SUPERFAMILY SSF63867 344 421 6.15E-19 T 19-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8310 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:3.90.105.10 148 178 6.3E-16 T 19-04-2016 AMED_8310 6847b216f27da548e210c194af74bfa4 425 SUPERFAMILY SSF63882 19 192 1.44E-44 T 19-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8310 6847b216f27da548e210c194af74bfa4 425 SMART SM00852 196 335 2.1E-25 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8310 6847b216f27da548e210c194af74bfa4 425 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 193 331 5.4E-25 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8310 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:3.40.980.10 179 348 4.2E-48 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8310 6847b216f27da548e210c194af74bfa4 425 Gene3D G3DSA:2.170.190.11 62 147 1.9E-33 T 19-04-2016 AMED_8310 6847b216f27da548e210c194af74bfa4 425 Pfam PF03453 MoeA N-terminal region (domain I and II) 27 183 1.1E-28 T 19-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8310 6847b216f27da548e210c194af74bfa4 425 SUPERFAMILY SSF53218 193 340 9.55E-32 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 SMART SM00382 26 214 1.4E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 Pfam PF00005 ABC transporter 17 162 4.5E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 PANTHER PTHR24220:SF568 3 234 2.3E-107 T 19-04-2016 AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 SUPERFAMILY SSF52540 2 233 4.26E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 Gene3D G3DSA:3.40.50.300 1 232 2.1E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1378 559a55d7d930db3f533ed86b5851ad33 235 PANTHER PTHR24220 3 234 2.3E-107 T 19-04-2016 AMED_1751 cf2fff88622e84dc96dacdc822cd876f 63 SUPERFAMILY SSF143800 2 62 1.22E-22 T 19-04-2016 AMED_1751 cf2fff88622e84dc96dacdc822cd876f 63 Gene3D G3DSA:2.30.170.40 2 60 8.4E-22 T 19-04-2016 AMED_1751 cf2fff88622e84dc96dacdc822cd876f 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 63 16.865 T 19-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1751 cf2fff88622e84dc96dacdc822cd876f 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 2 57 3.8E-21 T 19-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1751 cf2fff88622e84dc96dacdc822cd876f 63 Pfam PF00830 Ribosomal L28 family 4 59 1.7E-21 T 19-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 AMED_3217 85ff4389e53b7a12cbf452678d64e1a9 285 Pfam PF00296 Luciferase-like monooxygenase 15 260 1.4E-50 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3217 85ff4389e53b7a12cbf452678d64e1a9 285 SUPERFAMILY SSF51679 6 280 4.58E-59 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3217 85ff4389e53b7a12cbf452678d64e1a9 285 PANTHER PTHR30011 6 234 2.3E-47 T 19-04-2016 AMED_3217 85ff4389e53b7a12cbf452678d64e1a9 285 Gene3D G3DSA:3.20.20.30 2 262 7.4E-63 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3217 85ff4389e53b7a12cbf452678d64e1a9 285 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 23 262 1.0E-72 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_3600 71799c3f7f02adedaa3d13df424c2a10 182 Pfam PF00484 Carbonic anhydrase 31 170 1.8E-8 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_3600 71799c3f7f02adedaa3d13df424c2a10 182 Gene3D G3DSA:3.40.1050.10 5 175 1.4E-32 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_3600 71799c3f7f02adedaa3d13df424c2a10 182 PANTHER PTHR11002:SF9 1 174 1.6E-17 T 19-04-2016 AMED_3600 71799c3f7f02adedaa3d13df424c2a10 182 SUPERFAMILY SSF53056 5 173 2.75E-25 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_3600 71799c3f7f02adedaa3d13df424c2a10 182 PANTHER PTHR11002 1 174 1.6E-17 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_3600 71799c3f7f02adedaa3d13df424c2a10 182 SMART SM00947 23 174 2.0E-6 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_8205 c4cd2b8c1276565ccc63ba96e490287f 381 Pfam PF13473 Cupredoxin-like domain 16 128 8.4E-13 T 19-04-2016 IPR028096 EfeO-type cupredoxin-like domain AMED_8205 c4cd2b8c1276565ccc63ba96e490287f 381 Gene3D G3DSA:2.60.40.420 30 129 2.1E-4 T 19-04-2016 IPR008972 Cupredoxin AMED_8205 c4cd2b8c1276565ccc63ba96e490287f 381 Pfam PF09375 Imelysin 145 374 5.0E-39 T 19-04-2016 AMED_8205 c4cd2b8c1276565ccc63ba96e490287f 381 PANTHER PTHR39192 1 381 1.4E-92 T 19-04-2016 AMED_7779 ae6ba8e8765ff112da5a1bc451a23aa2 186 Gene3D G3DSA:1.20.5.620 81 140 9.1E-13 T 19-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain AMED_7779 ae6ba8e8765ff112da5a1bc451a23aa2 186 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 29 175 9.9E-29 T 19-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 AMED_7779 ae6ba8e8765ff112da5a1bc451a23aa2 186 Hamap MF_01398 ATP synthase subunit b [atpF]. 18 175 13.144 T 19-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMED_7779 ae6ba8e8765ff112da5a1bc451a23aa2 186 SUPERFAMILY SSF81573 81 139 1.26E-10 T 19-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain AMED_7779 ae6ba8e8765ff112da5a1bc451a23aa2 186 Pfam PF00430 ATP synthase B/B' CF(0) 26 154 2.7E-27 T 19-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMED_5995 79414ec664961619af9992997b77417e 473 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 144 159 1.4E-11 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_5995 79414ec664961619af9992997b77417e 473 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 323 338 1.4E-11 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_5995 79414ec664961619af9992997b77417e 473 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 342 354 1.4E-11 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_5995 79414ec664961619af9992997b77417e 473 Gene3D G3DSA:1.10.390.10 338 470 3.1E-23 T 19-04-2016 AMED_5995 79414ec664961619af9992997b77417e 473 PANTHER PTHR11533 10 216 1.8E-79 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_5995 79414ec664961619af9992997b77417e 473 SUPERFAMILY SSF63737 15 207 2.88E-34 T 19-04-2016 AMED_5995 79414ec664961619af9992997b77417e 473 Pfam PF01433 Peptidase family M1 30 215 6.3E-18 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_5995 79414ec664961619af9992997b77417e 473 Pfam PF01433 Peptidase family M1 263 366 6.8E-20 T 19-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMED_5995 79414ec664961619af9992997b77417e 473 PANTHER PTHR11533:SF185 10 216 1.8E-79 T 19-04-2016 AMED_5995 79414ec664961619af9992997b77417e 473 PANTHER PTHR11533:SF185 245 462 1.8E-79 T 19-04-2016 AMED_5995 79414ec664961619af9992997b77417e 473 PANTHER PTHR11533 245 462 1.8E-79 T 19-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 AMED_5995 79414ec664961619af9992997b77417e 473 SUPERFAMILY SSF55486 247 470 3.48E-54 T 19-04-2016 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 PANTHER PTHR30328:SF29 3 75 5.7E-13 T 19-04-2016 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 PANTHER PTHR30328 3 75 5.7E-13 T 19-04-2016 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 Gene3D G3DSA:1.10.357.10 13 177 6.2E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 2.2E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4703 8c9f1d41c8a805b201ab4747c1b9eddf 356 SUPERFAMILY SSF46689 4 71 4.0E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6498 5fcbaf22810c3fce752a8b1ae8b38a11 124 SUPERFAMILY SSF46785 11 118 1.79E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6498 5fcbaf22810c3fce752a8b1ae8b38a11 124 Pfam PF03965 Penicillinase repressor 11 118 4.6E-26 T 19-04-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 AMED_6498 5fcbaf22810c3fce752a8b1ae8b38a11 124 PANTHER PTHR34134 3 118 2.4E-29 T 19-04-2016 AMED_6498 5fcbaf22810c3fce752a8b1ae8b38a11 124 PANTHER PTHR34134:SF1 3 118 2.4E-29 T 19-04-2016 AMED_6498 5fcbaf22810c3fce752a8b1ae8b38a11 124 Gene3D G3DSA:1.10.10.10 10 79 1.9E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2433 43b95a0759f64d5d25422f26f06bfe9e 409 Pfam PF02470 MlaD protein 38 113 1.2E-17 T 19-04-2016 IPR003399 Mce/MlaD AMED_2433 43b95a0759f64d5d25422f26f06bfe9e 409 PANTHER PTHR33371:SF2 1 370 1.0E-90 T 19-04-2016 AMED_2433 43b95a0759f64d5d25422f26f06bfe9e 409 PANTHER PTHR33371 1 370 1.0E-90 T 19-04-2016 AMED_2433 43b95a0759f64d5d25422f26f06bfe9e 409 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 291 6.8E-61 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 Gene3D G3DSA:3.40.50.300 7 284 6.5E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 PANTHER PTHR19211:SF7 1 558 0.0 T 19-04-2016 AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 SUPERFAMILY SSF52540 8 240 2.39E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 Gene3D G3DSA:3.40.50.300 338 535 4.5E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 Pfam PF00005 ABC transporter 338 471 2.6E-19 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 Pfam PF00005 ABC transporter 21 188 8.7E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 PANTHER PTHR19211 1 558 0.0 T 19-04-2016 AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 Pfam PF12848 ABC transporter 227 303 1.5E-13 T 19-04-2016 IPR032781 ABC-transporter extension domain AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 555 5.2E-265 T 19-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 SMART SM00382 30 239 1.3E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 SMART SM00382 346 516 9.1E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6829 9b87945c46bb892e110bcd9547c3117c 558 SUPERFAMILY SSF52540 307 507 6.61E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4270 d8cd954bf8311ea0c10f82d2d69516f5 316 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 155 277 1.1E-29 T 19-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AMED_4270 d8cd954bf8311ea0c10f82d2d69516f5 316 PANTHER PTHR30160:SF11 7 277 8.3E-52 T 19-04-2016 AMED_4270 d8cd954bf8311ea0c10f82d2d69516f5 316 SUPERFAMILY SSF53756 7 279 2.51E-58 T 19-04-2016 AMED_4270 d8cd954bf8311ea0c10f82d2d69516f5 316 Gene3D G3DSA:3.40.50.2000 147 308 2.1E-45 T 19-04-2016 AMED_4270 d8cd954bf8311ea0c10f82d2d69516f5 316 Gene3D G3DSA:3.40.50.2000 7 65 7.9E-10 T 19-04-2016 AMED_4270 d8cd954bf8311ea0c10f82d2d69516f5 316 PANTHER PTHR30160 7 277 8.3E-52 T 19-04-2016 AMED_6599 b50d67ce865831879bbfdf8f2c19d4c2 217 PANTHER PTHR30336 18 217 1.3E-26 T 19-04-2016 AMED_6599 b50d67ce865831879bbfdf8f2c19d4c2 217 Pfam PF02698 DUF218 domain 50 195 3.1E-21 T 19-04-2016 IPR003848 Domain of unknown function DUF218 AMED_6599 b50d67ce865831879bbfdf8f2c19d4c2 217 Gene3D G3DSA:3.40.50.620 43 176 1.0E-15 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 SUPERFAMILY SSF51735 118 296 2.27E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 Gene3D G3DSA:3.90.180.10 4 154 2.1E-28 T 19-04-2016 IPR011032 GroES-like AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 Gene3D G3DSA:3.40.50.720 155 244 2.7E-9 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 SMART SM00829 13 320 1.4E-7 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 PANTHER PTHR11695 18 322 9.6E-49 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 Pfam PF13602 Zinc-binding dehydrogenase 207 320 2.6E-18 T 19-04-2016 AMED_4651 fcc7612dd31190c152fdaae7ebf34bea 322 SUPERFAMILY SSF50129 1 144 8.07E-28 T 19-04-2016 IPR011032 GroES-like AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 SUPERFAMILY SSF51735 105 270 2.63E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 Gene3D G3DSA:3.40.192.10 6 109 2.1E-32 T 19-04-2016 AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 PANTHER PTHR21089 5 278 3.8E-58 T 19-04-2016 AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 8 92 8.0E-21 T 19-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 SUPERFAMILY SSF53223 3 104 2.01E-25 T 19-04-2016 AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 Gene3D G3DSA:3.40.50.720 110 271 1.2E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4360 9131e0d91bfe36b555c6e14ff308a90f 282 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 3 274 27.599 T 19-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_7104 e00b55206118e2d80a06c32e49499785 152 Gene3D G3DSA:1.10.260.40 39 133 5.6E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 PANTHER PTHR32305:SF6 1085 1392 8.9E-98 T 19-04-2016 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues 1449 1501 1.5E-10 T 19-04-2016 IPR026835 UPF0720 protein yqcG AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1289 1363 2.1E-23 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 SUPERFAMILY SSF140459 88 216 6.8E-6 T 19-04-2016 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 681 710 2.5E-5 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 717 753 1.3E-5 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 631 667 1.5E-4 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 738 774 1.9E-7 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 847 878 4.3E-6 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 589 625 1.9E-7 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 Pfam PF05593 RHS Repeat 1161 1191 5.6E-7 T 19-04-2016 IPR031325 RHS repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 PANTHER PTHR32305:SF6 458 1009 8.9E-98 T 19-04-2016 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 PRINTS PR00394 RHS protein signature 1308 1328 7.2E-10 T 19-04-2016 IPR001826 RHS protein AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 PRINTS PR00394 RHS protein signature 1331 1350 7.2E-10 T 19-04-2016 IPR001826 RHS protein AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 SUPERFAMILY SSF101898 616 771 3.14E-5 T 19-04-2016 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 PANTHER PTHR32305 1085 1392 8.9E-98 T 19-04-2016 AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 842 880 4.7E-8 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1078 1102 0.0033 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 738 777 1.4E-8 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 589 627 2.0E-4 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1161 1191 3.0E-9 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 525 560 1.0E-5 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 632 666 0.0012 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 680 709 1.4E-4 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 717 756 3.4E-7 T 19-04-2016 IPR006530 YD repeat AMED_1418 800950494faadbe74d9b9f80c69ffbe2 1521 PANTHER PTHR32305 458 1009 8.9E-98 T 19-04-2016 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF00204 DNA gyrase B 241 431 2.0E-45 T 19-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 SUPERFAMILY SSF54211 281 431 5.5E-31 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Gene3D G3DSA:3.30.565.10 7 227 2.1E-71 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 613 669 1.6E-23 T 19-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 SUPERFAMILY SSF56719 435 671 2.22E-73 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 137 6.9E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 SMART SM00433 36 674 1.4E-205 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 306 319 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 461 475 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 565 577 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 71 84 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 36 51 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 545 562 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 613 629 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 114 128 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR00418 DNA topoisomerase II family signature 527 543 1.2E-57 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PANTHER PTHR10169 7 682 6.8E-191 T 19-04-2016 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 199 214 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 351 367 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 650 666 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 7 17 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 511 520 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 634 646 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 280 298 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PRINTS PR01159 DNA gyrase subunit B signature 415 435 1.9E-27 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Gene3D G3DSA:3.40.50.670 446 663 1.1E-72 T 19-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Pfam PF01751 Toprim domain 460 560 2.8E-12 T 19-04-2016 IPR006171 Toprim domain AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 SUPERFAMILY SSF55874 7 226 7.6E-52 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 PANTHER PTHR10169:SF20 7 682 6.8E-191 T 19-04-2016 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 Gene3D G3DSA:3.30.230.10 241 431 7.0E-42 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 ProSitePatterns PS00177 DNA topoisomerase II signature. 463 471 - T 19-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_1298 d9c0f09c89c123f3775c3c1f43fd020d 683 SMART SM00387 32 193 9.5E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5765 6bffdf90711dbe8dc59f7ebbe8454cae 293 SUPERFAMILY SSF47413 35 83 6.62E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5765 6bffdf90711dbe8dc59f7ebbe8454cae 293 PANTHER PTHR35010:SF2 1 291 1.8E-86 T 19-04-2016 AMED_5765 6bffdf90711dbe8dc59f7ebbe8454cae 293 Gene3D G3DSA:1.10.260.40 6 85 5.9E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5765 6bffdf90711dbe8dc59f7ebbe8454cae 293 PANTHER PTHR35010 1 291 1.8E-86 T 19-04-2016 AMED_5765 6bffdf90711dbe8dc59f7ebbe8454cae 293 SMART SM00530 9 86 3.9E-4 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5765 6bffdf90711dbe8dc59f7ebbe8454cae 293 Pfam PF13560 Helix-turn-helix domain 14 89 1.3E-13 T 19-04-2016 AMED_6966 0ae246131635c412a124d9500634a7f8 271 PANTHER PTHR30319 9 268 3.6E-34 T 19-04-2016 AMED_6966 0ae246131635c412a124d9500634a7f8 271 Gene3D G3DSA:1.10.10.10 40 85 2.2E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6966 0ae246131635c412a124d9500634a7f8 271 Pfam PF07848 PaaX-like protein 11 78 8.6E-17 T 19-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 AMED_6966 0ae246131635c412a124d9500634a7f8 271 PIRSF PIRSF020623 4 271 4.6E-57 T 19-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 AMED_6966 0ae246131635c412a124d9500634a7f8 271 Pfam PF08223 PaaX-like protein C-terminal domain 100 258 1.1E-32 T 19-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 AMED_6966 0ae246131635c412a124d9500634a7f8 271 SUPERFAMILY SSF46785 40 127 6.22E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6966 0ae246131635c412a124d9500634a7f8 271 PANTHER PTHR30319:SF1 9 268 3.6E-34 T 19-04-2016 AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 SUPERFAMILY SSF53474 308 468 3.15E-16 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 SUPERFAMILY SSF53474 175 237 3.15E-16 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 SUPERFAMILY SSF53474 81 131 3.15E-16 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 PANTHER PTHR10992 15 135 3.0E-32 T 19-04-2016 AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 PANTHER PTHR10992 183 241 3.0E-32 T 19-04-2016 AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 Gene3D G3DSA:3.40.50.1820 182 286 9.5E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 Gene3D G3DSA:3.40.50.1820 53 136 9.5E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 Gene3D G3DSA:3.40.50.1820 360 498 9.5E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 Pfam PF08386 TAP-like protein 414 509 3.8E-14 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 PANTHER PTHR10992:SF863 183 241 3.0E-32 T 19-04-2016 AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 PANTHER PTHR10992:SF863 15 135 3.0E-32 T 19-04-2016 AMED_2930 d0e79c5961aee1f8fea6265162deff2e 560 Pfam PF00561 alpha/beta hydrolase fold 87 282 3.1E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5740 93cda96670393a04737e3b84ad56d607 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_5740 93cda96670393a04737e3b84ad56d607 294 PIRSF PIRSF036298 3 292 1.9E-67 T 19-04-2016 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 AMED_5740 93cda96670393a04737e3b84ad56d607 294 PANTHER PTHR11938 18 43 8.0E-44 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 PANTHER PTHR11938 62 72 8.0E-44 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 PANTHER PTHR11938 100 213 8.0E-44 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 Gene3D G3DSA:3.30.70.20 117 149 2.3E-13 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 Gene3D G3DSA:3.30.70.20 185 230 1.3E-35 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 Gene3D G3DSA:3.30.70.20 89 116 1.3E-35 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 Gene3D G3DSA:3.30.70.20 18 46 1.3E-35 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 Pfam PF13247 4Fe-4S dicluster domain 105 199 1.0E-23 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_5740 93cda96670393a04737e3b84ad56d607 294 PANTHER PTHR11938:SF88 18 43 8.0E-44 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 PANTHER PTHR11938:SF88 62 72 8.0E-44 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 PANTHER PTHR11938:SF88 100 213 8.0E-44 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 Gene3D G3DSA:3.30.70.20 150 184 6.9E-15 T 19-04-2016 AMED_5740 93cda96670393a04737e3b84ad56d607 294 SUPERFAMILY SSF54862 18 261 3.66E-61 T 19-04-2016 AMED_0868 b13bf90f38e8706c6c3a1dc0d1ddb836 108 PANTHER PTHR33204:SF6 3 103 8.9E-23 T 19-04-2016 AMED_0868 b13bf90f38e8706c6c3a1dc0d1ddb836 108 PANTHER PTHR33204 3 103 8.9E-23 T 19-04-2016 AMED_0868 b13bf90f38e8706c6c3a1dc0d1ddb836 108 Gene3D G3DSA:1.10.10.10 3 105 2.8E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0868 b13bf90f38e8706c6c3a1dc0d1ddb836 108 SUPERFAMILY SSF46785 6 103 2.73E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0868 b13bf90f38e8706c6c3a1dc0d1ddb836 108 Pfam PF01638 HxlR-like helix-turn-helix 15 95 2.5E-15 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_5404 f849fe88e48aa5c8f00d774040340096 392 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 372 3.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5404 f849fe88e48aa5c8f00d774040340096 392 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 353 3.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5404 f849fe88e48aa5c8f00d774040340096 392 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 391 3.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5404 f849fe88e48aa5c8f00d774040340096 392 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 389 2.2E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5404 f849fe88e48aa5c8f00d774040340096 392 PIRSF PIRSF037434 2 392 1.1E-71 T 19-04-2016 IPR017205 Signal transduction histidine kinase, ChrS AMED_5404 f849fe88e48aa5c8f00d774040340096 392 PANTHER PTHR24421:SF24 193 390 1.2E-49 T 19-04-2016 AMED_5404 f849fe88e48aa5c8f00d774040340096 392 SUPERFAMILY SSF55874 299 390 3.41E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5404 f849fe88e48aa5c8f00d774040340096 392 PANTHER PTHR24421 193 390 1.2E-49 T 19-04-2016 AMED_5404 f849fe88e48aa5c8f00d774040340096 392 Pfam PF07730 Histidine kinase 198 263 1.0E-16 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5404 f849fe88e48aa5c8f00d774040340096 392 SMART SM00387 303 392 4.5E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5404 f849fe88e48aa5c8f00d774040340096 392 Gene3D G3DSA:3.30.565.10 302 390 3.8E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 SUPERFAMILY SSF50621 266 429 9.0E-31 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PANTHER PTHR11482:SF45 33 439 9.4E-156 T 19-04-2016 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 Gene3D G3DSA:2.40.37.10 276 429 5.0E-33 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PANTHER PTHR11482 33 439 9.4E-156 T 19-04-2016 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 Gene3D G3DSA:3.20.20.10 37 275 9.3E-52 T 19-04-2016 IPR029066 PLP-binding barrel AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 80 92 2.6E-6 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 193 206 2.6E-6 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 384 397 2.6E-6 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 60 78 2.6E-6 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 279 298 2.6E-6 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 229 246 - T 19-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 340 403 1.1E-8 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 289 3.5E-33 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_5226 2df69fe5f4156828e30cafbd4a26fff0 442 SUPERFAMILY SSF51419 34 290 1.12E-43 T 19-04-2016 IPR029066 PLP-binding barrel AMED_2339 4c36650f994112dbb11f39c017074490 342 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 323 9.2E-94 T 19-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 AMED_2339 4c36650f994112dbb11f39c017074490 342 PANTHER PTHR30004:SF6 1 339 4.4E-130 T 19-04-2016 AMED_2339 4c36650f994112dbb11f39c017074490 342 Gene3D G3DSA:3.40.718.10 4 327 9.0E-114 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_2339 4c36650f994112dbb11f39c017074490 342 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 327 6.4E-99 T 19-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 AMED_2339 4c36650f994112dbb11f39c017074490 342 PANTHER PTHR30004 1 339 4.4E-130 T 19-04-2016 AMED_2339 4c36650f994112dbb11f39c017074490 342 SUPERFAMILY SSF53659 5 328 3.36E-98 T 19-04-2016 AMED_2339 4c36650f994112dbb11f39c017074490 342 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 327 32.818 T 19-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF46894 2 88 3.68E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 PANTHER PTHR35807 1 253 4.4E-62 T 19-04-2016 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 664 697 270.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 744 777 1.4 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 704 737 240.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 824 857 14.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00028 784 817 1.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 PRINTS PR00364 Disease resistance protein signature 411 425 3.6E-8 T 19-04-2016 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 PRINTS PR00364 Disease resistance protein signature 326 340 3.6E-8 T 19-04-2016 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 PRINTS PR00364 Disease resistance protein signature 250 265 3.6E-8 T 19-04-2016 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM01043 95 240 7.8E-45 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.25.40.10 768 863 6.6E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.25.40.10 649 767 4.7E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF48452 646 732 1.8E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF48452 90 256 6.32E-38 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF00486 Transcriptional regulatory protein, C terminal 23 75 1.3E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF03704 Bacterial transcriptional activator domain 95 240 4.8E-40 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.10.10.10 10 88 8.4E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF52540 234 476 1.13E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:1.25.40.10 154 216 4.0E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SUPERFAMILY SSF48452 722 862 4.93E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00862 15 88 9.2E-12 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 SMART SM00382 247 380 2.9E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF00931 NB-ARC domain 251 430 1.3E-11 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Pfam PF13424 Tetratricopeptide repeat 707 776 3.2E-9 T 19-04-2016 AMED_4420 49867cf6dcfc98601b181e5bb3196fe7 885 Gene3D G3DSA:3.40.50.300 248 342 1.0E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 212 363 1.5E-9 T 19-04-2016 AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 PANTHER PTHR11712 212 360 1.2E-23 T 19-04-2016 AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 PANTHER PTHR11712:SF285 212 360 1.2E-23 T 19-04-2016 AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 Gene3D G3DSA:3.40.50.720 214 361 8.2E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 SUPERFAMILY SSF51735 216 362 2.35E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 Pfam PF08659 KR domain 212 361 1.8E-23 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_7607 d6e392ed801d2f60bb2911581e4bf710 375 SUPERFAMILY SSF51735 19 202 7.48E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 176 1.9E-48 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 SUPERFAMILY SSF52518 358 534 1.1E-51 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 SUPERFAMILY SSF52467 164 339 8.96E-33 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 Gene3D G3DSA:3.40.50.970 358 529 1.5E-51 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 PANTHER PTHR18968:SF116 9 522 1.8E-138 T 19-04-2016 AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 Gene3D G3DSA:3.40.50.970 9 185 2.3E-50 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 522 2.9E-37 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 SUPERFAMILY SSF52518 3 192 7.25E-46 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 323 1.1E-21 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 412 431 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 PANTHER PTHR18968 9 522 1.8E-138 T 19-04-2016 AMED_3018 97ff432c7f7bbd1e08fa464696f94fd4 543 Gene3D G3DSA:3.40.50.1220 189 334 3.1E-31 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1915 4267c7a6d990def2473733ed14095905 384 Pfam PF10979 Protein of unknown function (DUF2786) 177 214 6.4E-16 T 19-04-2016 IPR024498 Domain of unknown function DUF2786 AMED_1915 4267c7a6d990def2473733ed14095905 384 ProDom PD120223 SCO3432 GENE ML2604 GP79 GP77 CGL2230 MB0190 178 359 2.0E-32 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF47336 1004 1077 1.96E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6242 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF52777 52 227 1.72E-45 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Pfam PF13745 HxxPF-repeated domain 366 457 2.1E-19 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Pfam PF00668 Condensation domain 49 344 3.2E-61 T 19-04-2016 IPR001242 Condensation domain AMED_6242 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF52777 234 474 1.56E-58 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 PANTHER PTHR24095:SF137 47 1079 1.1E-294 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.40.50.980 505 656 5.0E-45 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 PANTHER PTHR24095 47 1079 1.1E-294 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.30.300.30 900 1016 3.4E-37 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:1.10.1200.10 1017 1079 2.5E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6242 b206851aedae032e3b8008c781559604 1116 Pfam PF13193 AMP-binding enzyme C-terminal domain 912 987 3.1E-11 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_6242 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:2.30.38.10 817 894 7.4E-26 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Pfam PF00501 AMP-binding enzyme 512 904 1.2E-95 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6242 b206851aedae032e3b8008c781559604 1116 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 531 928 5.0E-125 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_6242 b206851aedae032e3b8008c781559604 1116 Pfam PF00550 Phosphopantetheine attachment site 1013 1075 8.4E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6242 b206851aedae032e3b8008c781559604 1116 ProSitePatterns PS00455 Putative AMP-binding domain signature. 648 659 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_6242 b206851aedae032e3b8008c781559604 1116 SUPERFAMILY SSF56801 473 1023 9.68E-153 T 19-04-2016 AMED_6242 b206851aedae032e3b8008c781559604 1116 Gene3D G3DSA:3.40.50.980 657 816 7.5E-40 T 19-04-2016 AMED_1195 a64b2c3f60f27e56fd9729b5273cb50b 475 SUPERFAMILY SSF53720 2 469 3.27E-127 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_1195 a64b2c3f60f27e56fd9729b5273cb50b 475 Gene3D G3DSA:3.40.309.10 262 444 8.7E-56 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_1195 a64b2c3f60f27e56fd9729b5273cb50b 475 PANTHER PTHR11699:SF108 3 470 4.8E-199 T 19-04-2016 AMED_1195 a64b2c3f60f27e56fd9729b5273cb50b 475 Gene3D G3DSA:3.40.605.10 2 261 7.1E-68 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_1195 a64b2c3f60f27e56fd9729b5273cb50b 475 PANTHER PTHR11699 3 470 4.8E-199 T 19-04-2016 AMED_1195 a64b2c3f60f27e56fd9729b5273cb50b 475 Pfam PF00171 Aldehyde dehydrogenase family 25 466 1.5E-126 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_7523 6f61a183cea5441ec81b1cfc177a5be0 158 PANTHER PTHR39428 11 156 7.9E-33 T 19-04-2016 AMED_7523 6f61a183cea5441ec81b1cfc177a5be0 158 Pfam PF04075 Domain of unknown function (DUF385) 34 155 2.0E-28 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_7523 6f61a183cea5441ec81b1cfc177a5be0 158 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 42 154 4.1E-32 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_7523 6f61a183cea5441ec81b1cfc177a5be0 158 SUPERFAMILY SSF50475 48 157 7.86E-9 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7523 6f61a183cea5441ec81b1cfc177a5be0 158 Gene3D G3DSA:2.30.110.10 48 154 3.0E-6 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_0113 4c5fabda0aca789e91b0ae72766c0a09 359 SUPERFAMILY SSF55874 246 355 2.29E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0113 4c5fabda0aca789e91b0ae72766c0a09 359 PANTHER PTHR24421 31 358 1.7E-73 T 19-04-2016 AMED_0113 4c5fabda0aca789e91b0ae72766c0a09 359 Gene3D G3DSA:3.30.565.10 273 355 1.6E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0113 4c5fabda0aca789e91b0ae72766c0a09 359 Pfam PF07730 Histidine kinase 164 229 1.7E-18 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_0113 4c5fabda0aca789e91b0ae72766c0a09 359 PANTHER PTHR24421:SF26 31 358 1.7E-73 T 19-04-2016 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 SMART SM00448 1 112 4.7E-45 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 SUPERFAMILY SSF52172 1 184 1.07E-44 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 PANTHER PTHR26402 1 227 3.7E-96 T 19-04-2016 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 Gene3D G3DSA:1.10.10.10 127 227 1.7E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 Gene3D G3DSA:3.40.50.2300 1 126 1.4E-43 T 19-04-2016 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 6.1E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 PANTHER PTHR26402:SF556 1 227 3.7E-96 T 19-04-2016 AMED_8333 748aa9f2561652108e8a04a7e87f2c04 230 SMART SM00862 150 225 2.6E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Gene3D G3DSA:3.50.50.60 132 197 2.8E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Gene3D G3DSA:3.50.50.60 299 355 2.8E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Gene3D G3DSA:3.50.50.60 1 76 2.8E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 PANTHER PTHR13847 1 354 9.4E-83 T 19-04-2016 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Pfam PF01266 FAD dependent oxidoreductase 1 335 2.2E-52 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 PANTHER PTHR13847:SF211 1 354 9.4E-83 T 19-04-2016 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 SUPERFAMILY SSF51905 299 355 1.94E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 SUPERFAMILY SSF51905 1 208 1.94E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 SUPERFAMILY SSF54373 208 298 1.31E-16 T 19-04-2016 AMED_2068 7c5b4bcb0387b362ccd0140cb5a0d7b8 366 Gene3D G3DSA:3.30.9.10 198 297 3.1E-14 T 19-04-2016 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 2.7E-13 T 19-04-2016 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 2.7E-13 T 19-04-2016 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 2.7E-13 T 19-04-2016 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 2.7E-13 T 19-04-2016 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 SUPERFAMILY SSF51905 3 167 5.28E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 SUPERFAMILY SSF51905 264 342 5.28E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 PANTHER PTHR13789 4 344 3.9E-98 T 19-04-2016 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 Gene3D G3DSA:3.50.50.60 265 341 7.3E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 Gene3D G3DSA:3.50.50.60 3 173 7.3E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 Pfam PF01494 FAD binding domain 3 332 2.5E-21 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_8825 bbf17b9f69120436186a42b2c000e42d 364 PANTHER PTHR13789:SF251 4 344 3.9E-98 T 19-04-2016 AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 Pfam PF00561 alpha/beta hydrolase fold 34 131 1.8E-15 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 PRINTS PR00412 Epoxide hydrolase signature 262 284 6.1E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 PRINTS PR00412 Epoxide hydrolase signature 116 129 6.1E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 PRINTS PR00412 Epoxide hydrolase signature 39 57 6.1E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 Gene3D G3DSA:3.40.50.1820 7 284 1.6E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 SUPERFAMILY SSF53474 6 284 2.27E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 PANTHER PTHR10992:SF877 5 287 1.0E-43 T 19-04-2016 AMED_5082 ba6cda3374edeb862a2334b0edef4b73 289 PANTHER PTHR10992 5 287 1.0E-43 T 19-04-2016 AMED_6954 71162ac7dce2aecd3b79897cb4442ed8 327 Pfam PF00296 Luciferase-like monooxygenase 14 297 8.7E-38 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6954 71162ac7dce2aecd3b79897cb4442ed8 327 PANTHER PTHR30011:SF26 16 311 4.3E-41 T 19-04-2016 AMED_6954 71162ac7dce2aecd3b79897cb4442ed8 327 PANTHER PTHR30011 16 311 4.3E-41 T 19-04-2016 AMED_6954 71162ac7dce2aecd3b79897cb4442ed8 327 TIGRFAM TIGR03841 F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family 7 303 1.2E-108 T 19-04-2016 IPR022526 F420-dependent oxidoreductase, Rv3093c AMED_6954 71162ac7dce2aecd3b79897cb4442ed8 327 SUPERFAMILY SSF51679 1 304 1.21E-42 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6954 71162ac7dce2aecd3b79897cb4442ed8 327 Gene3D G3DSA:3.20.20.30 1 307 3.4E-44 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 SUPERFAMILY SSF48498 96 211 4.13E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 66 1.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 SUPERFAMILY SSF46689 19 89 3.23E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 3.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 3.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 PANTHER PTHR30055 6 211 6.5E-21 T 19-04-2016 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 Pfam PF13977 Bacterial transcriptional repressor 97 211 3.4E-12 T 19-04-2016 AMED_7839 19a97d240dbd22b935619b9b7b77f18d 219 Gene3D G3DSA:1.10.357.10 20 215 1.4E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6609 5240c223fadc59bce6ae3f4948959b5d 137 PANTHER PTHR33202 14 136 3.0E-54 T 19-04-2016 AMED_6609 5240c223fadc59bce6ae3f4948959b5d 137 Pfam PF01475 Ferric uptake regulator family 14 130 1.6E-34 T 19-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMED_6609 5240c223fadc59bce6ae3f4948959b5d 137 PANTHER PTHR33202:SF5 14 136 3.0E-54 T 19-04-2016 AMED_6609 5240c223fadc59bce6ae3f4948959b5d 137 SUPERFAMILY SSF46785 14 135 2.62E-36 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6609 5240c223fadc59bce6ae3f4948959b5d 137 Gene3D G3DSA:1.10.10.10 14 83 1.9E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8295 fca36055909a3f7b152c05986479a830 87 Gene3D G3DSA:1.10.1200.10 6 77 4.0E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8295 fca36055909a3f7b152c05986479a830 87 SMART SM00823 Phosphopantetheine attachment site 9 80 8.8E-7 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_8295 fca36055909a3f7b152c05986479a830 87 Pfam PF00550 Phosphopantetheine attachment site 11 76 1.2E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8295 fca36055909a3f7b152c05986479a830 87 SUPERFAMILY SSF47336 3 79 9.95E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 230 244 3.5E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 3.5E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 3.5E-5 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 SUPERFAMILY SSF53474 10 283 1.22E-46 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 PANTHER PTHR10992 5 286 4.2E-36 T 19-04-2016 AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 Gene3D G3DSA:3.40.50.1820 10 283 2.0E-46 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5135 1b99aa3efa58a3e6812b4a7b28371a42 289 Pfam PF12697 Alpha/beta hydrolase family 32 278 8.3E-14 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 SUPERFAMILY SSF56801 2 367 1.7E-107 T 19-04-2016 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 Gene3D G3DSA:3.30.300.30 269 367 2.2E-35 T 19-04-2016 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 Pfam PF00501 AMP-binding enzyme 2 273 2.5E-55 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 Pfam PF13193 AMP-binding enzyme C-terminal domain 283 358 1.7E-24 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3133 d6d436133da8344f8a13994e05c674b1 368 Gene3D G3DSA:2.30.38.10 171 265 2.7E-21 T 19-04-2016 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 Gene3D G3DSA:3.40.50.980 2 164 4.7E-34 T 19-04-2016 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2 13 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3133 d6d436133da8344f8a13994e05c674b1 368 PANTHER PTHR24095 246 367 4.6E-109 T 19-04-2016 AMED_3133 d6d436133da8344f8a13994e05c674b1 368 PANTHER PTHR24095 1 222 4.6E-109 T 19-04-2016 AMED_6210 d60bd1ed63b0b22e412a65b2219ac9cc 186 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 9 161 1.2E-47 T 19-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 AMED_6210 d60bd1ed63b0b22e412a65b2219ac9cc 186 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 8 158 7.6E-35 T 19-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 AMED_6210 d60bd1ed63b0b22e412a65b2219ac9cc 186 Gene3D G3DSA:3.30.230.60 7 167 8.8E-46 T 19-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 AMED_6210 d60bd1ed63b0b22e412a65b2219ac9cc 186 SUPERFAMILY SSF54211 7 160 3.26E-41 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 SUPERFAMILY SSF53850 31 288 1.49E-38 T 19-04-2016 AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 Gene3D G3DSA:3.40.190.120 141 232 2.7E-18 T 19-04-2016 AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 PANTHER PTHR30177 8 289 4.0E-48 T 19-04-2016 AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 288 3.3E-33 T 19-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 Gene3D G3DSA:3.40.190.10 28 140 1.5E-31 T 19-04-2016 AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 Gene3D G3DSA:3.40.190.10 243 289 1.5E-31 T 19-04-2016 AMED_7956 96060fb250190cc1ba0ff21e8480f745 290 PANTHER PTHR30177:SF12 8 289 4.0E-48 T 19-04-2016 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 SUPERFAMILY SSF48264 19 403 1.13E-85 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 Gene3D G3DSA:1.10.630.10 13 403 7.2E-114 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PANTHER PTHR24286 35 403 4.5E-80 T 19-04-2016 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 Pfam PF00067 Cytochrome P450 228 372 2.9E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 322 337 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 160 175 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 276 287 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 143 159 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 352 363 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 343 352 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 198 220 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00359 B-class P450 signature 294 321 2.1E-44 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00385 P450 superfamily signature 343 352 1.5E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00385 P450 superfamily signature 241 258 1.5E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PRINTS PR00385 P450 superfamily signature 352 363 1.5E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7438 45fd55d865866604c021a24f8fd43f45 403 PANTHER PTHR24286:SF42 35 403 4.5E-80 T 19-04-2016 AMED_5651 30345e18a28d9ec591a38ca04331ba15 100 Pfam PF00196 Bacterial regulatory proteins, luxR family 26 66 1.7E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5651 30345e18a28d9ec591a38ca04331ba15 100 SMART SM00421 25 70 2.3E-4 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5651 30345e18a28d9ec591a38ca04331ba15 100 Gene3D G3DSA:1.10.10.10 25 67 4.6E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5651 30345e18a28d9ec591a38ca04331ba15 100 SUPERFAMILY SSF46894 25 67 2.31E-9 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 318 1.1E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PANTHER PTHR22912 6 443 7.0E-119 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 Gene3D G3DSA:3.50.50.60 142 327 1.1E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 337 437 7.9E-12 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 SUPERFAMILY SSF55424 334 443 8.55E-19 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.0E-20 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 8.0E-20 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 8.0E-20 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 8.0E-20 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 272 8.0E-20 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PIRSF PIRSF000350 1 447 7.5E-77 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 354 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 392 407 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 257 271 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 434 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.0E-50 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 PANTHER PTHR22912:SF166 6 443 7.0E-119 T 19-04-2016 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 Gene3D G3DSA:3.30.390.30 332 443 3.2E-21 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 Gene3D G3DSA:3.50.50.60 5 141 6.8E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3505 df1e514decc9ef2fe028704659ed6dac 454 SUPERFAMILY SSF51905 3 328 8.33E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 PANTHER PTHR23151 23 588 5.3E-211 T 19-04-2016 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF51230 1 95 1.11E-26 T 19-04-2016 IPR011053 Single hybrid motif AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Pfam PF00364 Biotin-requiring enzyme 135 207 1.2E-21 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Pfam PF00364 Biotin-requiring enzyme 5 76 1.3E-21 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:2.40.50.100 1 95 1.4E-27 T 19-04-2016 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:2.40.50.100 134 226 5.4E-29 T 19-04-2016 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF52777 347 588 1.78E-74 T 19-04-2016 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMED_2168 30075e73f9ab74add9be580811e9dbba 597 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 158 187 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 361 588 3.3E-70 T 19-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 PANTHER PTHR23151:SF8 23 588 5.3E-211 T 19-04-2016 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 TIGRFAM TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 1 597 3.9E-275 T 19-04-2016 IPR014276 2-oxoglutarate dehydrogenase, E2 component KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:3.30.559.10 354 588 5.3E-76 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_2168 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF51230 134 227 1.44E-26 T 19-04-2016 IPR011053 Single hybrid motif AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Gene3D G3DSA:4.10.320.10 278 325 1.2E-18 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 SUPERFAMILY SSF47005 276 318 1.31E-11 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_2168 30075e73f9ab74add9be580811e9dbba 597 Pfam PF02817 e3 binding domain 280 314 1.5E-14 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 SUPERFAMILY SSF53784 1 333 2.09E-119 T 19-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 Pfam PF00365 Phosphofructokinase 2 296 4.6E-100 T 19-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PIRSF PIRSF000532 1 339 1.3E-118 T 19-04-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 ProSitePatterns PS00433 Phosphofructokinase signature. 265 283 - T 19-04-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 5 24 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 261 283 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 211 223 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 2.6E-71 T 19-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 1 341 43.848 T 19-04-2016 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 PANTHER PTHR13697 1 335 5.3E-124 T 19-04-2016 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 TIGRFAM TIGR02483 PFK_mixed: phosphofructokinase 2 321 1.8E-153 T 19-04-2016 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2460 0271fb9290250d84ea6d0a9954bd2d0d 341 Gene3D G3DSA:3.40.50.450 1 211 5.4E-71 T 19-04-2016 AMED_3162 2cf5e710bb905a75047b466a8c435708 300 SUPERFAMILY SSF52540 2 223 8.4E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3162 2cf5e710bb905a75047b466a8c435708 300 SMART SM00382 27 205 8.3E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3162 2cf5e710bb905a75047b466a8c435708 300 PANTHER PTHR24220:SF523 4 217 3.7E-108 T 19-04-2016 AMED_3162 2cf5e710bb905a75047b466a8c435708 300 PANTHER PTHR24220 4 217 3.7E-108 T 19-04-2016 AMED_3162 2cf5e710bb905a75047b466a8c435708 300 Gene3D G3DSA:3.40.50.300 2 220 7.0E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3162 2cf5e710bb905a75047b466a8c435708 300 Pfam PF00005 ABC transporter 19 157 2.9E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3162 2cf5e710bb905a75047b466a8c435708 300 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0069 17f9453947e4e1cf471aadf2ead71a77 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 265 3.0E-31 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0069 17f9453947e4e1cf471aadf2ead71a77 269 PANTHER PTHR30465:SF10 3 267 3.4E-92 T 19-04-2016 AMED_0069 17f9453947e4e1cf471aadf2ead71a77 269 PANTHER PTHR30465 3 267 3.4E-92 T 19-04-2016 AMED_0069 17f9453947e4e1cf471aadf2ead71a77 269 SUPERFAMILY SSF161098 60 247 2.75E-26 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0069 17f9453947e4e1cf471aadf2ead71a77 269 Gene3D G3DSA:1.10.3720.10 58 264 1.2E-27 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3636 f273a9887c77ce244db8747025da5ddc 425 Gene3D G3DSA:2.160.20.10 7 385 2.3E-7 T 19-04-2016 IPR012334 Pectin lyase fold AMED_3636 f273a9887c77ce244db8747025da5ddc 425 SUPERFAMILY SSF51126 5 380 2.87E-7 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PANTHER PTHR11482 13 441 2.0E-137 T 19-04-2016 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PANTHER PTHR11482:SF5 13 441 2.0E-137 T 19-04-2016 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 SUPERFAMILY SSF51419 50 315 7.07E-72 T 19-04-2016 IPR029066 PLP-binding barrel AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 79 97 - T 19-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 97 114 1.5E-21 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 330 348 1.5E-21 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 183 192 1.5E-21 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01181 Diaminopimelate decarboxylase signature 413 435 1.5E-21 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Gene3D G3DSA:3.20.20.10 59 305 5.0E-80 T 19-04-2016 IPR029066 PLP-binding barrel AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 39 446 37.149 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 319 420 1.7E-14 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 SUPERFAMILY SSF50621 288 445 4.6E-46 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 31 444 1.7E-119 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 303 322 3.2E-18 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 403 416 3.2E-18 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 214 227 3.2E-18 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 79 97 3.2E-18 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 99 111 3.2E-18 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Gene3D G3DSA:2.40.37.10 306 445 1.6E-42 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_8978 31d90e0e3a4e0df1ea59b7b08d9ca40e 447 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 60 313 2.8E-54 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 Gene3D G3DSA:3.30.70.1230 338 510 1.2E-34 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 SUPERFAMILY SSF55073 333 513 6.75E-46 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_3398 7f287abab5e1ae405006a27db68706e2 518 SMART SM00304 256 308 4.6E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 PANTHER PTHR11920 305 468 1.5E-68 T 19-04-2016 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 338 508 1.6E-22 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 Pfam PF00672 HAMP domain 237 303 8.6E-14 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 SUPERFAMILY SSF158472 256 305 3.4E-8 T 19-04-2016 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 PANTHER PTHR11920:SF317 305 468 1.5E-68 T 19-04-2016 AMED_3398 7f287abab5e1ae405006a27db68706e2 518 SMART SM00044 304 494 1.0E-6 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_8915 c957bb0ec0a945322a7b3e7632824057 143 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 12 137 4.1E-26 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_8915 c957bb0ec0a945322a7b3e7632824057 143 Gene3D G3DSA:2.30.110.10 3 140 4.9E-29 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8915 c957bb0ec0a945322a7b3e7632824057 143 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 9 90 2.4E-12 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8915 c957bb0ec0a945322a7b3e7632824057 143 SUPERFAMILY SSF50475 2 139 1.43E-24 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 SMART SM00382 29 212 8.3E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 Pfam PF00005 ABC transporter 20 163 1.1E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 PANTHER PTHR24220 6 227 1.1E-95 T 19-04-2016 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 PANTHER PTHR24220 293 303 1.1E-95 T 19-04-2016 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 Gene3D G3DSA:3.40.50.300 3 225 1.5E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 PANTHER PTHR24220:SF0 6 227 1.1E-95 T 19-04-2016 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 PANTHER PTHR24220:SF0 293 303 1.1E-95 T 19-04-2016 AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 SUPERFAMILY SSF52540 4 226 1.49E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4706 21c9f8b3f021e65957c2642e96c01efc 308 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 12 305 2.2E-101 T 19-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- AMED_3656 5f1aed80751d438cf644a35947ccb5da 363 Gene3D G3DSA:3.40.710.10 46 333 6.0E-82 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3656 5f1aed80751d438cf644a35947ccb5da 363 Pfam PF00144 Beta-lactamase 44 337 2.6E-63 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3656 5f1aed80751d438cf644a35947ccb5da 363 PANTHER PTHR22935 84 339 3.5E-62 T 19-04-2016 AMED_3656 5f1aed80751d438cf644a35947ccb5da 363 PANTHER PTHR22935:SF69 84 339 3.5E-62 T 19-04-2016 AMED_3656 5f1aed80751d438cf644a35947ccb5da 363 SUPERFAMILY SSF56601 43 335 7.25E-76 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 Gene3D G3DSA:2.80.10.50 421 540 1.1E-37 T 19-04-2016 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 SUPERFAMILY SSF50370 417 540 1.86E-37 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 SMART SM00458 419 542 2.9E-23 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 SUPERFAMILY SSF51445 32 324 2.11E-82 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 Gene3D G3DSA:3.20.20.70 37 325 1.5E-108 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PANTHER PTHR11452 3 453 2.7E-150 T 19-04-2016 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 Pfam PF00652 Ricin-type beta-trefoil lectin domain 421 539 8.0E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 SUPERFAMILY SSF51011 319 411 1.32E-17 T 19-04-2016 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 ProSitePatterns PS00512 Alpha-galactosidase signature. 76 92 - T 19-04-2016 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 Pfam PF16499 Alpha galactosidase A 40 365 7.0E-90 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 Gene3D G3DSA:2.60.40.1180 329 411 1.8E-24 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 182 200 2.8E-47 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 280 301 2.8E-47 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 259 278 2.8E-47 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 153 170 2.8E-47 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 71 86 2.8E-47 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_7386 c8fdf6837a11905bd460130cd03048d7 542 PRINTS PR00740 Glycosyl hydrolase family 27 signature 35 54 2.8E-47 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3956 261673d167f657c9e67a589fe62bea6c 118 PANTHER PTHR34389:SF3 2 112 5.9E-37 T 19-04-2016 AMED_3956 261673d167f657c9e67a589fe62bea6c 118 Pfam PF05336 Domain of unknown function (DUF718) 4 107 4.5E-36 T 19-04-2016 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 UniPathway: UPA00125 AMED_3956 261673d167f657c9e67a589fe62bea6c 118 SUPERFAMILY SSF54909 2 107 9.65E-32 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_3956 261673d167f657c9e67a589fe62bea6c 118 PANTHER PTHR34389 2 112 5.9E-37 T 19-04-2016 AMED_4556 0235233dea0e9506b18e57b1ff81e10b 116 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 112 5.1E-5 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_4556 0235233dea0e9506b18e57b1ff81e10b 116 Gene3D G3DSA:3.10.180.10 5 115 2.3E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4556 0235233dea0e9506b18e57b1ff81e10b 116 PANTHER PTHR35908:SF1 1 115 1.6E-24 T 19-04-2016 AMED_4556 0235233dea0e9506b18e57b1ff81e10b 116 SUPERFAMILY SSF54593 5 116 5.77E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4556 0235233dea0e9506b18e57b1ff81e10b 116 PANTHER PTHR35908 1 115 1.6E-24 T 19-04-2016 AMED_2961 55cd3430ef6e36ea6dc4069ad1a494e4 194 Gene3D G3DSA:3.40.10.10 170 188 0.001 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_2961 55cd3430ef6e36ea6dc4069ad1a494e4 194 SUPERFAMILY SSF57884 168 191 5.89E-5 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_8869 7ba06beb4c4130e5974c19696b390f69 462 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 48 378 1.2E-74 T 19-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMED_8869 7ba06beb4c4130e5974c19696b390f69 462 PANTHER PTHR11999 34 446 1.1E-189 T 19-04-2016 AMED_8869 7ba06beb4c4130e5974c19696b390f69 462 Gene3D G3DSA:3.40.640.10 80 326 2.4E-28 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8869 7ba06beb4c4130e5974c19696b390f69 462 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 34 444 3.8E-188 T 19-04-2016 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 AMED_8869 7ba06beb4c4130e5974c19696b390f69 462 PANTHER PTHR11999:SF111 34 446 1.1E-189 T 19-04-2016 AMED_8869 7ba06beb4c4130e5974c19696b390f69 462 SUPERFAMILY SSF53383 31 444 7.79E-132 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2136 21b98808ba4d95572418bccab7441695 89 Pfam PF14452 Multiubiquitin 16 84 1.1E-13 T 19-04-2016 IPR027802 Multi-ubiquitin domain AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 Gene3D G3DSA:3.40.50.880 3 221 2.3E-41 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 PANTHER PTHR10099 4 224 3.7E-104 T 19-04-2016 AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 PIRSF PIRSF001586 1 225 7.2E-79 T 19-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 SMART SM01211 2 222 8.8E-117 T 19-04-2016 AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 SUPERFAMILY SSF52317 3 221 1.72E-69 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 4 207 1.6E-33 T 19-04-2016 AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 3 220 38.774 T 19-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9050 b73c2171c19789d63aa047ce888f5cb1 225 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 4 220 8.2E-79 T 19-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_7563 42a743e4b274571d91a3f7c753028037 377 SUPERFAMILY SSF55424 300 372 7.28E-14 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 SUPERFAMILY SSF51905 140 297 3.72E-24 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 SUPERFAMILY SSF51905 2 183 3.05E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 222 238 1.9E-22 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 269 1.9E-22 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.9E-22 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.9E-22 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 141 159 1.9E-22 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 286 1.9E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PANTHER PTHR22912 1 376 2.4E-85 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PANTHER PTHR22912:SF180 1 376 2.4E-85 T 19-04-2016 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 137 161 2.7E-9 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 257 275 2.7E-9 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 2.7E-9 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 2.7E-9 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 224 245 2.7E-9 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 Gene3D G3DSA:3.50.50.60 104 294 3.8E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 Gene3D G3DSA:3.30.390.30 307 369 2.2E-13 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 Gene3D G3DSA:3.50.50.60 2 103 2.1E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7563 42a743e4b274571d91a3f7c753028037 377 Pfam PF14759 Reductase C-terminal 307 368 3.7E-10 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_5584 13c842c6d1aa182e89dae30dba2f3578 199 PANTHER PTHR11351:SF3 15 194 2.8E-63 T 19-04-2016 AMED_5584 13c842c6d1aa182e89dae30dba2f3578 199 PANTHER PTHR11351 15 194 2.8E-63 T 19-04-2016 AMED_5584 13c842c6d1aa182e89dae30dba2f3578 199 PRINTS PR00075 Fatty acid desaturase family 1 signature 71 91 2.8E-6 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_5584 13c842c6d1aa182e89dae30dba2f3578 199 PRINTS PR00075 Fatty acid desaturase family 1 signature 48 70 2.8E-6 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_5584 13c842c6d1aa182e89dae30dba2f3578 199 PRINTS PR00075 Fatty acid desaturase family 1 signature 108 137 2.8E-6 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_5584 13c842c6d1aa182e89dae30dba2f3578 199 Pfam PF00487 Fatty acid desaturase 54 197 2.2E-9 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 Gene3D G3DSA:3.20.20.70 8 259 1.4E-104 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 PANTHER PTHR21235:SF2 4 259 2.3E-126 T 19-04-2016 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 Pfam PF00977 Histidine biosynthesis protein 8 242 8.2E-86 T 19-04-2016 IPR006062 Histidine biosynthesis GO:0000105 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 4 259 48.027 T 19-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 PANTHER PTHR21235 4 259 2.3E-126 T 19-04-2016 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 SUPERFAMILY SSF51366 6 259 3.69E-79 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_2282 5a9e4ffa784e9bfdc12c36c78b801ccb 259 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 5 259 8.6E-113 T 19-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 AMED_4777 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:1.10.10.10 4 81 4.2E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4777 57f607df7b1b75d534966bbf66572720 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.4E-15 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4777 57f607df7b1b75d534966bbf66572720 300 SUPERFAMILY SSF46785 3 80 1.38E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4777 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:3.40.190.10 88 168 1.9E-21 T 19-04-2016 AMED_4777 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:3.40.190.10 270 298 1.9E-21 T 19-04-2016 AMED_4777 57f607df7b1b75d534966bbf66572720 300 Gene3D G3DSA:3.40.190.10 169 266 8.9E-31 T 19-04-2016 AMED_4777 57f607df7b1b75d534966bbf66572720 300 PANTHER PTHR30118 4 295 1.4E-98 T 19-04-2016 AMED_4777 57f607df7b1b75d534966bbf66572720 300 PANTHER PTHR30118:SF5 4 295 1.4E-98 T 19-04-2016 AMED_4777 57f607df7b1b75d534966bbf66572720 300 Pfam PF03466 LysR substrate binding domain 98 292 1.0E-29 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4777 57f607df7b1b75d534966bbf66572720 300 SUPERFAMILY SSF53850 88 291 6.7E-39 T 19-04-2016 AMED_2206 51a2f24a002273ad88edf83282ad5547 567 PANTHER PTHR30562:SF1 183 540 4.5E-76 T 19-04-2016 AMED_2206 51a2f24a002273ad88edf83282ad5547 567 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 17 191 6.5E-30 T 19-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_2206 51a2f24a002273ad88edf83282ad5547 567 SMART SM00479 21 189 3.2E-51 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMED_2206 51a2f24a002273ad88edf83282ad5547 567 Gene3D G3DSA:3.40.1440.10 223 262 5.1E-4 T 19-04-2016 IPR027299 GIY-YIG domain AMED_2206 51a2f24a002273ad88edf83282ad5547 567 SMART SM00465 222 303 2.4E-14 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMED_2206 51a2f24a002273ad88edf83282ad5547 567 Pfam PF01541 GIY-YIG catalytic domain 224 298 5.2E-6 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMED_2206 51a2f24a002273ad88edf83282ad5547 567 PANTHER PTHR30562 183 540 4.5E-76 T 19-04-2016 AMED_2206 51a2f24a002273ad88edf83282ad5547 567 SUPERFAMILY SSF53098 16 200 2.71E-54 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_2206 51a2f24a002273ad88edf83282ad5547 567 SUPERFAMILY SSF82771 222 302 2.62E-16 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMED_2206 51a2f24a002273ad88edf83282ad5547 567 Pfam PF00929 Exonuclease 23 180 8.3E-32 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMED_2206 51a2f24a002273ad88edf83282ad5547 567 Gene3D G3DSA:3.30.420.10 14 196 1.3E-56 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_5031 5116f1f68bd08b958ce7bdcb271d4966 69 PANTHER PTHR38444 1 69 5.4E-35 T 19-04-2016 AMED_5031 5116f1f68bd08b958ce7bdcb271d4966 69 SMART SM00923 3 53 1.3E-28 T 19-04-2016 IPR005153 MbtH-like protein AMED_5031 5116f1f68bd08b958ce7bdcb271d4966 69 SUPERFAMILY SSF160582 1 68 2.09E-30 T 19-04-2016 AMED_5031 5116f1f68bd08b958ce7bdcb271d4966 69 PANTHER PTHR38444:SF1 1 69 5.4E-35 T 19-04-2016 AMED_5031 5116f1f68bd08b958ce7bdcb271d4966 69 Gene3D G3DSA:3.90.820.10 10 68 4.9E-30 T 19-04-2016 AMED_5031 5116f1f68bd08b958ce7bdcb271d4966 69 Pfam PF03621 MbtH-like protein 1 52 9.3E-27 T 19-04-2016 IPR005153 MbtH-like protein AMED_4895 7eb053b4a41b4c63ce1e08899a107169 64 TIGRFAM TIGR03687 pupylate_cterm: ubiquitin-like protein Pup 33 64 1.5E-20 T 19-04-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 AMED_4895 7eb053b4a41b4c63ce1e08899a107169 64 Pfam PF05639 Pup-like protein 16 64 3.8E-21 T 19-04-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 AMED_4895 7eb053b4a41b4c63ce1e08899a107169 64 Hamap MF_02106 Prokaryotic ubiquitin-like protein Pup [pup]. 1 64 16.309 T 19-04-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 PIRSF PIRSF015582 15 348 5.3E-82 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 PANTHER PTHR32308:SF2 227 347 7.6E-138 T 19-04-2016 AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 PANTHER PTHR32308:SF2 6 202 7.6E-138 T 19-04-2016 AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 Gene3D G3DSA:3.20.20.60 23 288 6.4E-65 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 32 194 3.7E-29 T 19-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 PANTHER PTHR32308 227 347 7.6E-138 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 PANTHER PTHR32308 6 202 7.6E-138 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 SUPERFAMILY SSF51621 25 193 7.33E-52 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_0079 1348ad39cc3f4f76a149aa0db1b17f4d 356 SUPERFAMILY SSF51621 220 288 7.33E-52 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_7012 5078f7e962717afa5640d5126cd310d3 384 SUPERFAMILY SSF103473 5 380 9.68E-45 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7012 5078f7e962717afa5640d5126cd310d3 384 PANTHER PTHR23501 4 383 8.4E-24 T 19-04-2016 AMED_7012 5078f7e962717afa5640d5126cd310d3 384 Pfam PF07690 Major Facilitator Superfamily 21 325 2.8E-24 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7012 5078f7e962717afa5640d5126cd310d3 384 Gene3D G3DSA:1.20.1250.20 200 378 1.8E-16 T 19-04-2016 AMED_7012 5078f7e962717afa5640d5126cd310d3 384 Gene3D G3DSA:1.20.1250.20 14 191 1.4E-17 T 19-04-2016 AMED_7024 8f2124b087875f7624631e237eed84f1 379 SUPERFAMILY SSF55874 259 376 3.16E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7024 8f2124b087875f7624631e237eed84f1 379 Pfam PF07730 Histidine kinase 184 246 9.7E-6 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_7024 8f2124b087875f7624631e237eed84f1 379 PANTHER PTHR24421 120 379 8.1E-21 T 19-04-2016 AMED_7024 8f2124b087875f7624631e237eed84f1 379 SMART SM00387 287 378 1.1E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7024 8f2124b087875f7624631e237eed84f1 379 Gene3D G3DSA:3.30.450.40 17 175 4.1E-20 T 19-04-2016 IPR029016 GAF domain-like AMED_7024 8f2124b087875f7624631e237eed84f1 379 SMART SM00065 29 177 8.6E-11 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_7024 8f2124b087875f7624631e237eed84f1 379 SUPERFAMILY SSF55781 33 176 3.49E-19 T 19-04-2016 IPR029016 GAF domain-like AMED_7024 8f2124b087875f7624631e237eed84f1 379 Gene3D G3DSA:3.30.565.10 291 377 4.1E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7024 8f2124b087875f7624631e237eed84f1 379 Pfam PF13185 GAF domain 38 168 9.2E-13 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6977 5d1c0ef31c9259ab23db7d51f21c5ae3 352 SUPERFAMILY SSF56112 14 341 1.75E-56 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_6977 5d1c0ef31c9259ab23db7d51f21c5ae3 352 Gene3D G3DSA:3.90.1200.10 126 332 6.4E-36 T 19-04-2016 AMED_6977 5d1c0ef31c9259ab23db7d51f21c5ae3 352 Pfam PF01636 Phosphotransferase enzyme family 35 270 1.9E-46 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 SUPERFAMILY SSF46955 2 103 3.59E-22 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 Pfam PF13411 MerR HTH family regulatory protein 3 67 2.8E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 PANTHER PTHR30204 1 238 9.4E-18 T 19-04-2016 AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 Gene3D G3DSA:1.10.1660.10 2 103 4.5E-25 T 19-04-2016 AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.4E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 2.4E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.4E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1830 7a6ced164dac1df5a69bea255cfe8a43 247 SMART SM00422 2 71 5.2E-17 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 271 290 - T 19-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 PIRSF PIRSF000108 1 407 2.3E-222 T 19-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 3 405 6.9E-210 T 19-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 SMART SM01329 9 396 1.2E-133 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 PANTHER PTHR11822 1 406 0.0 T 19-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 10 380 8.9E-68 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 Gene3D G3DSA:3.40.718.10 3 403 3.3E-171 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_0833 a5cc4218e687613a6a0b0a0b3cc99a89 407 SUPERFAMILY SSF53659 1 404 3.06E-149 T 19-04-2016 AMED_3493 03369ea1798e48a74c47f127ec0a20e6 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 66 1.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3493 03369ea1798e48a74c47f127ec0a20e6 205 PANTHER PTHR30055 3 205 1.7E-19 T 19-04-2016 AMED_3493 03369ea1798e48a74c47f127ec0a20e6 205 SUPERFAMILY SSF46689 9 91 1.33E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3493 03369ea1798e48a74c47f127ec0a20e6 205 Gene3D G3DSA:1.10.357.10 8 200 5.5E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7280 addc787ba335542693ef86f3c115d183 286 PIRSF PIRSF000105 5 286 1.7E-75 T 19-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMED_7280 addc787ba335542693ef86f3c115d183 286 Gene3D G3DSA:1.10.1040.10 191 285 2.5E-28 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7280 addc787ba335542693ef86f3c115d183 286 PANTHER PTHR23309 10 285 1.9E-106 T 19-04-2016 AMED_7280 addc787ba335542693ef86f3c115d183 286 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 187 7.8E-55 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7280 addc787ba335542693ef86f3c115d183 286 SUPERFAMILY SSF48179 189 285 5.7E-27 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7280 addc787ba335542693ef86f3c115d183 286 SUPERFAMILY SSF51735 10 189 7.45E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7280 addc787ba335542693ef86f3c115d183 286 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 285 2.5E-25 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7280 addc787ba335542693ef86f3c115d183 286 Gene3D G3DSA:3.40.50.720 7 190 6.6E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 Gene3D G3DSA:2.120.10.30 54 335 1.3E-55 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 PANTHER PTHR10907:SF47 107 315 4.4E-49 T 19-04-2016 AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 PANTHER PTHR10907:SF47 55 90 4.4E-49 T 19-04-2016 AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 PANTHER PTHR10907 107 315 4.4E-49 T 19-04-2016 AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 PANTHER PTHR10907 55 90 4.4E-49 T 19-04-2016 AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 SUPERFAMILY SSF63829 55 319 4.25E-50 T 19-04-2016 AMED_3911 36bf7cd22aab0e7543764d49a9d27cb5 336 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 67 316 8.9E-41 T 19-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF52096 30 213 3.73E-41 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF52096 246 321 3.73E-41 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 PANTHER PTHR23309 25 688 8.3E-250 T 19-04-2016 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 516 598 2.4E-12 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 PANTHER PTHR23309:SF2 25 688 8.3E-250 T 19-04-2016 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 Gene3D G3DSA:3.90.226.10 31 230 2.7E-40 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 230 3.6E-25 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF48179 515 617 1.02E-15 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 Gene3D G3DSA:3.40.50.720 328 517 6.0E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 Gene3D G3DSA:1.10.1040.10 518 598 1.3E-12 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 333 512 4.5E-56 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF48179 627 688 1.02E-10 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_2630 91bc0f66e38857d8a888fdeebfc9f463 703 SUPERFAMILY SSF51735 330 512 3.48E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2087 e1f7112e7268bf8843aba1ee2cad657e 369 PANTHER PTHR19353:SF34 10 337 1.1E-106 T 19-04-2016 AMED_2087 e1f7112e7268bf8843aba1ee2cad657e 369 Pfam PF00487 Fatty acid desaturase 65 332 6.9E-33 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_2087 e1f7112e7268bf8843aba1ee2cad657e 369 PANTHER PTHR19353 10 337 1.1E-106 T 19-04-2016 AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 Pfam PF00005 ABC transporter 37 177 8.6E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 SUPERFAMILY SSF52540 18 252 3.47E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 Gene3D G3DSA:3.40.50.300 14 233 3.2E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 SMART SM00382 46 228 2.2E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 PANTHER PTHR24220:SF454 19 255 2.8E-99 T 19-04-2016 AMED_1542 b843981a7b5bf5d5e05f9cbd942054bd 263 PANTHER PTHR24220 19 255 2.8E-99 T 19-04-2016 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PANTHER PTHR21661:SF35 1 382 9.8E-111 T 19-04-2016 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PIRSF PIRSF001112 1 382 1.1E-121 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PANTHER PTHR21661 1 382 9.8E-111 T 19-04-2016 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 Pfam PF06441 Epoxide hydrolase N terminus 7 112 1.4E-37 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 SUPERFAMILY SSF53474 4 380 1.4E-98 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 191 204 7.1E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 177 190 7.1E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 132 147 7.1E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 355 377 7.1E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 PRINTS PR00412 Epoxide hydrolase signature 103 121 7.1E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3178 b98d356f768d3ae077bc17dcf6bba538 382 Gene3D G3DSA:3.40.50.1820 2 381 1.6E-140 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 Gene3D G3DSA:1.10.1740.10 3 104 3.5E-34 T 19-04-2016 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 PANTHER PTHR30173 2 184 1.0E-47 T 19-04-2016 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 SUPERFAMILY SSF88946 3 102 9.89E-31 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 SUPERFAMILY SSF88659 118 181 9.53E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 Pfam PF04542 Sigma-70 region 2 22 88 2.8E-20 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 Gene3D G3DSA:1.10.10.10 119 183 8.4E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 PANTHER PTHR30173:SF24 2 184 1.0E-47 T 19-04-2016 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 179 6.2E-30 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2676 936f4a31af01cb5efb2ce591cbf572fd 184 Pfam PF08281 Sigma-70, region 4 126 177 6.4E-14 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7258 0d768c2a23b8becaa3d54a435c4d2dd1 309 PANTHER PTHR30193:SF6 1 308 6.2E-100 T 19-04-2016 AMED_7258 0d768c2a23b8becaa3d54a435c4d2dd1 309 Gene3D G3DSA:1.10.3720.10 21 302 1.1E-64 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7258 0d768c2a23b8becaa3d54a435c4d2dd1 309 PANTHER PTHR30193 1 308 6.2E-100 T 19-04-2016 AMED_7258 0d768c2a23b8becaa3d54a435c4d2dd1 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 299 7.6E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7258 0d768c2a23b8becaa3d54a435c4d2dd1 309 SUPERFAMILY SSF161098 74 300 2.62E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 28 79 1.0E-21 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 SUPERFAMILY SSF46911 6 79 5.89E-25 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 Pfam PF01084 Ribosomal protein S18 27 75 1.0E-22 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 Gene3D G3DSA:4.10.640.10 11 79 2.6E-29 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 ProSitePatterns PS00057 Ribosomal protein S18 signature. 28 51 - T 19-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 35 45 5.2E-16 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 67 77 5.2E-16 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 53 67 5.2E-16 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 PRINTS PR00974 Ribosomal protein S18 family signature 45 52 5.2E-16 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 3 80 20.29 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 PANTHER PTHR13479:SF42 2 82 4.3E-44 T 19-04-2016 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 TIGRFAM TIGR00165 S18: ribosomal protein bS18 9 79 5.3E-27 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9298 5dceba2dc6cc32f8720ee2a60c98adea 82 PANTHER PTHR13479 2 82 4.3E-44 T 19-04-2016 AMED_9057 088c1bffa18a6404aade091658c99f91 211 PANTHER PTHR15032:SF14 1 185 5.7E-24 T 19-04-2016 AMED_9057 088c1bffa18a6404aade091658c99f91 211 Gene3D G3DSA:3.60.15.10 1 209 9.5E-31 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_9057 088c1bffa18a6404aade091658c99f91 211 SMART SM00849 7 176 5.5E-7 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_9057 088c1bffa18a6404aade091658c99f91 211 PANTHER PTHR15032 1 185 5.7E-24 T 19-04-2016 AMED_9057 088c1bffa18a6404aade091658c99f91 211 SUPERFAMILY SSF56281 1 181 3.14E-24 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_9057 088c1bffa18a6404aade091658c99f91 211 Pfam PF13483 Beta-lactamase superfamily domain 3 176 4.3E-22 T 19-04-2016 AMED_8479 53972351b974cf821c42c4552cbd3244 418 SUPERFAMILY SSF103473 8 399 1.12E-46 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8479 53972351b974cf821c42c4552cbd3244 418 Gene3D G3DSA:1.20.1250.20 215 394 1.2E-19 T 19-04-2016 AMED_8479 53972351b974cf821c42c4552cbd3244 418 Gene3D G3DSA:1.20.1250.20 13 193 1.8E-17 T 19-04-2016 AMED_8479 53972351b974cf821c42c4552cbd3244 418 Pfam PF05977 Transmembrane secretion effector 2 396 4.1E-55 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_8479 53972351b974cf821c42c4552cbd3244 418 PANTHER PTHR23513 1 397 4.0E-91 T 19-04-2016 AMED_8479 53972351b974cf821c42c4552cbd3244 418 PANTHER PTHR23513:SF6 1 397 4.0E-91 T 19-04-2016 AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 PRINTS PR00069 Aldo-keto reductase signature 144 161 1.0E-6 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 PRINTS PR00069 Aldo-keto reductase signature 47 71 1.0E-6 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 PRINTS PR00069 Aldo-keto reductase signature 113 131 1.0E-6 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 Gene3D G3DSA:3.20.20.100 9 323 3.4E-102 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 PANTHER PTHR11732:SF255 1 347 1.4E-128 T 19-04-2016 AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 Pfam PF00248 Aldo/keto reductase family 16 318 2.4E-74 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 SUPERFAMILY SSF51430 1 322 4.06E-100 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1876 0e0aad89c5722bfe1f2fe6751db72e52 349 PANTHER PTHR11732 1 347 1.4E-128 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_2337 d43401accbdacf8018e9cd0941debef2 262 Gene3D G3DSA:1.10.10.10 10 58 1.1E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2337 d43401accbdacf8018e9cd0941debef2 262 SMART SM00420 11 62 6.4E-10 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 Gene3D G3DSA:3.40.50.1360 75 214 2.1E-13 T 19-04-2016 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 42 60 2.6E-8 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 42 2.6E-8 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 ProSitePatterns PS00894 DeoR-type HTH domain signature. 11 44 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 Pfam PF08220 DeoR-like helix-turn-helix domain 21 60 2.3E-12 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 PANTHER PTHR30363 7 233 5.5E-56 T 19-04-2016 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 SUPERFAMILY SSF100950 74 232 4.6E-29 T 19-04-2016 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 PANTHER PTHR30363:SF1 7 233 5.5E-56 T 19-04-2016 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 Pfam PF00455 DeoR C terminal sensor domain 74 232 1.9E-43 T 19-04-2016 IPR014036 DeoR C-terminal sensor domain AMED_2337 d43401accbdacf8018e9cd0941debef2 262 SMART SM01134 72 233 4.1E-64 T 19-04-2016 AMED_2337 d43401accbdacf8018e9cd0941debef2 262 SUPERFAMILY SSF46785 10 60 3.59E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 159 9.0E-44 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 Pfam PF04542 Sigma-70 region 2 19 79 1.1E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 Gene3D G3DSA:1.10.10.10 104 160 2.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 PANTHER PTHR30173 1 159 2.6E-25 T 19-04-2016 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 155 5.9E-20 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 SUPERFAMILY SSF88946 3 94 9.02E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 Pfam PF08281 Sigma-70, region 4 103 154 3.9E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 SUPERFAMILY SSF88659 103 159 1.07E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1791 88ac756d22724b108c92c19ce7aa2d25 166 Gene3D G3DSA:1.10.1740.10 1 97 1.3E-14 T 19-04-2016 AMED_9192 f7b32a2f34d484616027354544e6814c 359 SUPERFAMILY SSF51735 3 173 1.41E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9192 f7b32a2f34d484616027354544e6814c 359 SUPERFAMILY SSF55347 131 285 1.73E-17 T 19-04-2016 AMED_9192 f7b32a2f34d484616027354544e6814c 359 PANTHER PTHR22604:SF124 1 355 1.3E-76 T 19-04-2016 AMED_9192 f7b32a2f34d484616027354544e6814c 359 Gene3D G3DSA:3.40.50.720 1 138 1.2E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9192 f7b32a2f34d484616027354544e6814c 359 Gene3D G3DSA:3.30.360.10 139 351 1.2E-20 T 19-04-2016 AMED_9192 f7b32a2f34d484616027354544e6814c 359 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 123 2.0E-16 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_9192 f7b32a2f34d484616027354544e6814c 359 PANTHER PTHR22604 1 355 1.3E-76 T 19-04-2016 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 Pfam PF04542 Sigma-70 region 2 31 95 1.7E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 SUPERFAMILY SSF88946 7 106 1.41E-20 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 Gene3D G3DSA:1.10.1740.10 8 115 2.7E-21 T 19-04-2016 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 Pfam PF08281 Sigma-70, region 4 132 179 9.2E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 SUPERFAMILY SSF88659 124 181 2.8E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 PANTHER PTHR30173 1 179 1.9E-66 T 19-04-2016 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 180 7.2E-24 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 Gene3D G3DSA:1.10.10.10 130 181 4.5E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6530 0f71e965abb309b7b4fc0171b7162bef 190 PANTHER PTHR30173:SF2 1 179 1.9E-66 T 19-04-2016 AMED_1108 31a082c840522b619d5da3af563b2945 598 SUPERFAMILY SSF52540 144 429 5.34E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1108 31a082c840522b619d5da3af563b2945 598 PANTHER PTHR24031 544 579 1.4E-164 T 19-04-2016 AMED_1108 31a082c840522b619d5da3af563b2945 598 PANTHER PTHR24031 75 519 1.4E-164 T 19-04-2016 AMED_1108 31a082c840522b619d5da3af563b2945 598 SMART SM00490 329 410 1.2E-33 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1108 31a082c840522b619d5da3af563b2945 598 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 222 230 - T 19-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMED_1108 31a082c840522b619d5da3af563b2945 598 Pfam PF00270 DEAD/DEAH box helicase 99 259 1.4E-48 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_1108 31a082c840522b619d5da3af563b2945 598 PANTHER PTHR24031:SF261 544 579 1.4E-164 T 19-04-2016 AMED_1108 31a082c840522b619d5da3af563b2945 598 Gene3D G3DSA:3.40.50.300 289 440 1.2E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1108 31a082c840522b619d5da3af563b2945 598 Pfam PF00271 Helicase conserved C-terminal domain 301 410 2.1E-29 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1108 31a082c840522b619d5da3af563b2945 598 Gene3D G3DSA:3.40.50.300 66 288 3.1E-73 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1108 31a082c840522b619d5da3af563b2945 598 SMART SM00487 93 293 1.5E-53 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_1108 31a082c840522b619d5da3af563b2945 598 PANTHER PTHR24031:SF261 75 519 1.4E-164 T 19-04-2016 AMED_7131 37a5691efed70bdff966cc58fe52c944 305 PANTHER PTHR32308:SF0 4 296 1.5E-78 T 19-04-2016 AMED_7131 37a5691efed70bdff966cc58fe52c944 305 Gene3D G3DSA:3.20.20.60 6 248 1.6E-72 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_7131 37a5691efed70bdff966cc58fe52c944 305 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 11 238 1.2E-41 T 19-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMED_7131 37a5691efed70bdff966cc58fe52c944 305 SUPERFAMILY SSF51621 6 248 1.35E-61 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_7131 37a5691efed70bdff966cc58fe52c944 305 PIRSF PIRSF015582 2 305 3.3E-79 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_7131 37a5691efed70bdff966cc58fe52c944 305 PANTHER PTHR32308 4 296 1.5E-78 T 19-04-2016 IPR011206 Citrate lyase beta subunit-like AMED_2672 b3b9d8661922aea32007b15700616c67 114 Pfam PF03780 Asp23 family, cell envelope-related function 41 103 5.1E-7 T 19-04-2016 IPR005531 Alkaline shock protein Asp23 AMED_0379 ac4449ab92c7bbf27fbfeec60540fc1f 195 PANTHER PTHR10108 5 144 1.1E-30 T 19-04-2016 AMED_0379 ac4449ab92c7bbf27fbfeec60540fc1f 195 Gene3D G3DSA:3.40.50.150 6 187 3.0E-35 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0379 ac4449ab92c7bbf27fbfeec60540fc1f 195 Pfam PF08241 Methyltransferase domain 49 141 2.5E-24 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_0379 ac4449ab92c7bbf27fbfeec60540fc1f 195 SUPERFAMILY SSF53335 1 159 2.13E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0206 799a67608f6623b60ba9ad60ee1bb135 461 SUPERFAMILY SSF53187 264 374 2.27E-49 T 19-04-2016 AMED_0206 799a67608f6623b60ba9ad60ee1bb135 461 SUPERFAMILY SSF53187 41 235 2.27E-49 T 19-04-2016 AMED_0206 799a67608f6623b60ba9ad60ee1bb135 461 Pfam PF04389 Peptidase family M28 128 336 6.8E-29 T 19-04-2016 IPR007484 Peptidase M28 AMED_0206 799a67608f6623b60ba9ad60ee1bb135 461 PANTHER PTHR12147 306 378 4.0E-34 T 19-04-2016 AMED_0206 799a67608f6623b60ba9ad60ee1bb135 461 PANTHER PTHR12147 41 274 4.0E-34 T 19-04-2016 AMED_0206 799a67608f6623b60ba9ad60ee1bb135 461 Gene3D G3DSA:3.40.630.10 43 380 1.5E-50 T 19-04-2016 AMED_0395 0fbca8f6b0fbe24d2d390be1f5ebee97 306 Pfam PF00753 Metallo-beta-lactamase superfamily 29 211 1.1E-21 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0395 0fbca8f6b0fbe24d2d390be1f5ebee97 306 Gene3D G3DSA:3.60.15.10 3 235 2.2E-51 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0395 0fbca8f6b0fbe24d2d390be1f5ebee97 306 PANTHER PTHR11935 22 212 8.6E-39 T 19-04-2016 AMED_0395 0fbca8f6b0fbe24d2d390be1f5ebee97 306 SMART SM00849 30 211 3.0E-23 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0395 0fbca8f6b0fbe24d2d390be1f5ebee97 306 PANTHER PTHR11935:SF95 22 212 8.6E-39 T 19-04-2016 AMED_0395 0fbca8f6b0fbe24d2d390be1f5ebee97 306 SUPERFAMILY SSF56281 7 261 3.11E-58 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Gene3D G3DSA:3.30.420.10 21 200 1.9E-14 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SUPERFAMILY SSF47819 207 317 5.01E-24 T 19-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SUPERFAMILY SSF53098 8 224 5.24E-57 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 PANTHER PTHR12124:SF42 12 312 1.8E-57 T 19-04-2016 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Pfam PF00570 HRDC domain 230 294 1.6E-14 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 Pfam PF01612 3'-5' exonuclease 22 186 1.1E-37 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SMART SM00341 226 306 1.4E-15 T 19-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 SMART SM00474 20 187 2.3E-43 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMED_2640 8674e8ca4a3f55bbe4c6c8527084f6d6 407 PANTHER PTHR12124 12 312 1.8E-57 T 19-04-2016 AMED_1696 4369dc2071b9eb259292384500874b98 345 PANTHER PTHR11835 1 345 5.2E-185 T 19-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMED_1696 4369dc2071b9eb259292384500874b98 345 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 232 251 - T 19-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMED_1696 4369dc2071b9eb259292384500874b98 345 SUPERFAMILY SSF53659 2 333 4.99E-104 T 19-04-2016 AMED_1696 4369dc2071b9eb259292384500874b98 345 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 3 317 5.1E-86 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_1696 4369dc2071b9eb259292384500874b98 345 Hamap MF_01035 3-isopropylmalate dehydrogenase [leuB]. 1 338 57.053 T 19-04-2016 IPR023698 3-isopropylmalate dehydrogenase GO:0003862|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 AMED_1696 4369dc2071b9eb259292384500874b98 345 Gene3D G3DSA:3.40.718.10 2 319 3.4E-109 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_1696 4369dc2071b9eb259292384500874b98 345 PANTHER PTHR11835:SF49 1 345 5.2E-185 T 19-04-2016 AMED_1696 4369dc2071b9eb259292384500874b98 345 SMART SM01329 2 334 1.5E-153 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_8696 d2d6d02822db48a5d7bfea36ec4abb53 291 SUPERFAMILY SSF81345 13 266 1.44E-33 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_8696 d2d6d02822db48a5d7bfea36ec4abb53 291 Gene3D G3DSA:1.10.3470.10 21 260 1.7E-6 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_8696 d2d6d02822db48a5d7bfea36ec4abb53 291 PANTHER PTHR30477:SF0 9 279 4.6E-49 T 19-04-2016 AMED_8696 d2d6d02822db48a5d7bfea36ec4abb53 291 PANTHER PTHR30477 9 279 4.6E-49 T 19-04-2016 AMED_8696 d2d6d02822db48a5d7bfea36ec4abb53 291 Pfam PF00950 ABC 3 transport family 17 267 2.8E-44 T 19-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 Gene3D G3DSA:1.10.10.60 58 104 3.3E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 SUPERFAMILY SSF46689 6 53 1.18E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 PANTHER PTHR11019 4 111 1.6E-29 T 19-04-2016 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 2.4E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 2.4E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 SUPERFAMILY SSF46689 56 106 4.48E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 Gene3D G3DSA:1.10.10.60 4 57 1.2E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 SMART SM00342 20 103 8.2E-30 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6874 82cbe50b85b2569ee3700c303504d7a4 273 Pfam PF12833 Helix-turn-helix domain 26 104 3.3E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_1622 57a390f64a7860d5bc84ed087fa6a78f 173 SUPERFAMILY SSF55729 2 153 1.22E-30 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1622 57a390f64a7860d5bc84ed087fa6a78f 173 PANTHER PTHR13256 1 151 2.2E-26 T 19-04-2016 AMED_1622 57a390f64a7860d5bc84ed087fa6a78f 173 Gene3D G3DSA:3.40.630.30 2 161 1.6E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1622 57a390f64a7860d5bc84ed087fa6a78f 173 Pfam PF13302 Acetyltransferase (GNAT) domain 7 151 5.1E-25 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2033 861495d385578d40148d3db4557eac41 589 Gene3D G3DSA:1.20.1250.20 312 447 7.4E-17 T 19-04-2016 AMED_2033 861495d385578d40148d3db4557eac41 589 Gene3D G3DSA:1.20.1250.20 15 207 5.1E-21 T 19-04-2016 AMED_2033 861495d385578d40148d3db4557eac41 589 Gene3D G3DSA:1.20.1250.20 529 562 7.4E-17 T 19-04-2016 AMED_2033 861495d385578d40148d3db4557eac41 589 PANTHER PTHR23501:SF13 15 461 1.5E-169 T 19-04-2016 AMED_2033 861495d385578d40148d3db4557eac41 589 PANTHER PTHR23501:SF13 492 550 1.5E-169 T 19-04-2016 AMED_2033 861495d385578d40148d3db4557eac41 589 PANTHER PTHR23501 15 461 1.5E-169 T 19-04-2016 AMED_2033 861495d385578d40148d3db4557eac41 589 SUPERFAMILY SSF103473 530 561 2.35E-23 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2033 861495d385578d40148d3db4557eac41 589 SUPERFAMILY SSF103473 218 450 2.35E-23 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2033 861495d385578d40148d3db4557eac41 589 Pfam PF07690 Major Facilitator Superfamily 26 439 1.5E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2033 861495d385578d40148d3db4557eac41 589 SUPERFAMILY SSF103473 11 210 3.27E-29 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2033 861495d385578d40148d3db4557eac41 589 PANTHER PTHR23501 492 550 1.5E-169 T 19-04-2016 AMED_4925 7c17c4e8da639382d8f944d355b2c99f 457 Pfam PF00144 Beta-lactamase 4 331 2.2E-58 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_4925 7c17c4e8da639382d8f944d355b2c99f 457 Gene3D G3DSA:3.40.710.10 3 340 3.2E-76 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4925 7c17c4e8da639382d8f944d355b2c99f 457 SUPERFAMILY SSF56601 3 336 1.37E-70 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4925 7c17c4e8da639382d8f944d355b2c99f 457 PANTHER PTHR22935 3 338 2.4E-63 T 19-04-2016 AMED_3965 3df0589f84da464eee083409e91527b8 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 3.6E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3965 3df0589f84da464eee083409e91527b8 189 Gene3D G3DSA:1.10.357.10 67 187 4.6E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3965 3df0589f84da464eee083409e91527b8 189 SUPERFAMILY SSF48498 79 186 2.0E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3965 3df0589f84da464eee083409e91527b8 189 PANTHER PTHR30055 1 185 1.1E-19 T 19-04-2016 AMED_3965 3df0589f84da464eee083409e91527b8 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3965 3df0589f84da464eee083409e91527b8 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3965 3df0589f84da464eee083409e91527b8 189 SUPERFAMILY SSF46689 2 65 8.21E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3965 3df0589f84da464eee083409e91527b8 189 Gene3D G3DSA:1.10.10.60 2 63 4.7E-23 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3965 3df0589f84da464eee083409e91527b8 189 PANTHER PTHR30055:SF53 1 185 1.1E-19 T 19-04-2016 AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 PANTHER PTHR20935 4 121 1.4E-15 T 19-04-2016 AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 PANTHER PTHR20935:SF1 146 216 1.4E-15 T 19-04-2016 AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 SUPERFAMILY SSF53254 4 208 3.93E-32 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 Gene3D G3DSA:3.40.50.1240 4 211 1.3E-27 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 PANTHER PTHR20935 146 216 1.4E-15 T 19-04-2016 AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 203 2.4E-21 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 PANTHER PTHR20935:SF1 4 121 1.4E-15 T 19-04-2016 AMED_6976 f6a496e08a6ace4cdae5655f9314d293 218 SMART SM00855 3 162 1.5E-7 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6478 6436a4287f046207b0773b9eeea44697 466 PANTHER PTHR23501 6 447 9.7E-123 T 19-04-2016 AMED_6478 6436a4287f046207b0773b9eeea44697 466 PANTHER PTHR23501:SF69 6 447 9.7E-123 T 19-04-2016 AMED_6478 6436a4287f046207b0773b9eeea44697 466 Gene3D G3DSA:1.20.1250.20 262 462 2.6E-18 T 19-04-2016 AMED_6478 6436a4287f046207b0773b9eeea44697 466 Gene3D G3DSA:1.20.1250.20 7 191 7.3E-24 T 19-04-2016 AMED_6478 6436a4287f046207b0773b9eeea44697 466 SUPERFAMILY SSF103473 3 191 9.42E-38 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6478 6436a4287f046207b0773b9eeea44697 466 Pfam PF07690 Major Facilitator Superfamily 14 408 1.8E-39 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6478 6436a4287f046207b0773b9eeea44697 466 SUPERFAMILY SSF103473 186 458 3.53E-24 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 23 36 7.1E-5 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 69 89 7.1E-5 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 PANTHER PTHR12725 17 106 6.2E-22 T 19-04-2016 AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 SUPERFAMILY SSF56784 17 111 6.04E-26 T 19-04-2016 IPR023214 HAD-like domain AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 24 101 1.3E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 18 106 2.6E-16 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 Pfam PF13419 Haloacid dehalogenase-like hydrolase 20 102 2.1E-10 T 19-04-2016 IPR023214 HAD-like domain AMED_7985 beaa0a120a99dcb77092c696b1aa18b5 123 Gene3D G3DSA:3.40.50.1000 18 118 6.5E-31 T 19-04-2016 IPR023214 HAD-like domain AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 PANTHER PTHR30173 14 372 1.6E-134 T 19-04-2016 AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 SUPERFAMILY SSF88946 6 82 1.02E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 Pfam PF08281 Sigma-70, region 4 103 150 7.2E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 SUPERFAMILY SSF88659 97 154 6.11E-10 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 Gene3D G3DSA:1.10.10.10 97 155 1.4E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 Pfam PF04542 Sigma-70 region 2 7 70 2.4E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 PANTHER PTHR30173:SF7 14 372 1.6E-134 T 19-04-2016 AMED_7447 4a0e337810b901be2c012e3a68c16ae9 401 Gene3D G3DSA:1.10.1740.10 6 71 2.0E-8 T 19-04-2016 AMED_8561 c582f8ecd8abdeec578afea6e7ef9d86 188 Gene3D G3DSA:1.10.10.10 11 89 2.3E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8561 c582f8ecd8abdeec578afea6e7ef9d86 188 SUPERFAMILY SSF46785 10 89 1.93E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8561 c582f8ecd8abdeec578afea6e7ef9d86 188 Pfam PF12840 Helix-turn-helix domain 15 70 5.0E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8561 c582f8ecd8abdeec578afea6e7ef9d86 188 SMART SM00418 14 93 0.0013 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4793 7b0c538b32f9ae7785851c1e44801fb6 67 Gene3D G3DSA:3.90.820.10 6 65 1.1E-31 T 19-04-2016 AMED_4793 7b0c538b32f9ae7785851c1e44801fb6 67 SUPERFAMILY SSF160582 4 64 9.68E-28 T 19-04-2016 AMED_4793 7b0c538b32f9ae7785851c1e44801fb6 67 PANTHER PTHR38444:SF1 1 66 7.5E-25 T 19-04-2016 AMED_4793 7b0c538b32f9ae7785851c1e44801fb6 67 SMART SM00923 2 49 1.9E-19 T 19-04-2016 IPR005153 MbtH-like protein AMED_4793 7b0c538b32f9ae7785851c1e44801fb6 67 PANTHER PTHR38444 1 66 7.5E-25 T 19-04-2016 AMED_4793 7b0c538b32f9ae7785851c1e44801fb6 67 Pfam PF03621 MbtH-like protein 4 48 2.2E-21 T 19-04-2016 IPR005153 MbtH-like protein AMED_0927 b19a18ad980945cc270db463148342e0 577 PANTHER PTHR11985:SF1 18 562 1.2E-213 T 19-04-2016 AMED_0927 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 374 386 4.4E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 30 42 4.4E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 105 117 4.4E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 59 71 4.4E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 43 53 4.4E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 344 350 4.4E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 379 389 - T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 35 52 - T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_0927 b19a18ad980945cc270db463148342e0 577 SUPERFAMILY SSF51905 293 354 6.91E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0927 b19a18ad980945cc270db463148342e0 577 SUPERFAMILY SSF51905 29 256 6.91E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0927 b19a18ad980945cc270db463148342e0 577 Pfam PF01266 FAD dependent oxidoreductase 31 379 2.7E-49 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_0927 b19a18ad980945cc270db463148342e0 577 PANTHER PTHR11985 18 562 1.2E-213 T 19-04-2016 AMED_0927 b19a18ad980945cc270db463148342e0 577 Gene3D G3DSA:3.50.50.60 28 266 3.2E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0927 b19a18ad980945cc270db463148342e0 577 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 408 531 9.6E-31 T 19-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8810 3e428a1e04b254e51ec0d92dc1d25911 576 Gene3D G3DSA:3.40.710.10 48 407 4.3E-86 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8810 3e428a1e04b254e51ec0d92dc1d25911 576 PANTHER PTHR22935 117 425 5.6E-78 T 19-04-2016 AMED_8810 3e428a1e04b254e51ec0d92dc1d25911 576 Pfam PF05547 Immune inhibitor A peptidase M6 421 557 1.2E-7 T 19-04-2016 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 AMED_8810 3e428a1e04b254e51ec0d92dc1d25911 576 Pfam PF00144 Beta-lactamase 77 405 4.6E-73 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_8810 3e428a1e04b254e51ec0d92dc1d25911 576 SUPERFAMILY SSF56601 71 406 1.76E-82 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4481 db805cb67a01c97da3675cddee065b22 483 Pfam PF07690 Major Facilitator Superfamily 15 396 1.1E-45 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4481 db805cb67a01c97da3675cddee065b22 483 SUPERFAMILY SSF103473 456 476 2.22E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4481 db805cb67a01c97da3675cddee065b22 483 SUPERFAMILY SSF103473 8 193 2.22E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4481 db805cb67a01c97da3675cddee065b22 483 SUPERFAMILY SSF103473 236 406 2.22E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4481 db805cb67a01c97da3675cddee065b22 483 PANTHER PTHR23501 10 480 5.7E-108 T 19-04-2016 AMED_4481 db805cb67a01c97da3675cddee065b22 483 PANTHER PTHR23501:SF65 10 480 5.7E-108 T 19-04-2016 AMED_4481 db805cb67a01c97da3675cddee065b22 483 Gene3D G3DSA:1.20.1250.20 244 407 6.0E-12 T 19-04-2016 AMED_4481 db805cb67a01c97da3675cddee065b22 483 Gene3D G3DSA:1.20.1250.20 453 473 6.0E-12 T 19-04-2016 AMED_4481 db805cb67a01c97da3675cddee065b22 483 Gene3D G3DSA:1.20.1250.20 10 188 2.5E-31 T 19-04-2016 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 Gene3D G3DSA:1.10.10.10 3 71 4.2E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 Gene3D G3DSA:1.20.120.530 91 228 1.5E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 SMART SM00895 94 217 6.1E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 SUPERFAMILY SSF46785 4 72 1.52E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 Pfam PF07729 FCD domain 94 216 5.0E-28 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 3.9E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 PANTHER PTHR11751 88 110 4.3E-25 T 19-04-2016 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 PANTHER PTHR11751 4 71 4.3E-25 T 19-04-2016 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 SMART SM00345 9 68 5.4E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3094 8e231cb7f24471a91b0562246f9eba02 237 SUPERFAMILY SSF48008 91 225 9.42E-29 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 ProSitePatterns PS00512 Alpha-galactosidase signature. 65 81 - T 19-04-2016 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 Pfam PF16499 Alpha galactosidase A 29 221 3.7E-36 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 PANTHER PTHR11452 30 222 1.8E-77 T 19-04-2016 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 Gene3D G3DSA:3.20.20.70 26 222 9.6E-72 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 PANTHER PTHR11452:SF12 30 222 1.8E-77 T 19-04-2016 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 SUPERFAMILY SSF51445 29 222 1.37E-57 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 60 75 8.7E-20 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 24 43 8.7E-20 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 178 196 8.7E-20 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_8989 2fde75e9683ed1f4ea58d3c481e37651 224 PRINTS PR00740 Glycosyl hydrolase family 27 signature 101 122 8.7E-20 T 19-04-2016 IPR002241 Glycoside hydrolase, family 27 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_1496 52f82c886a2452176573d7bbd3489440 189 Pfam PF01464 Transglycosylase SLT domain 92 154 6.6E-5 T 19-04-2016 IPR008258 Transglycosylase SLT domain 1 AMED_1496 52f82c886a2452176573d7bbd3489440 189 Gene3D G3DSA:1.10.530.10 92 152 2.4E-6 T 19-04-2016 AMED_1496 52f82c886a2452176573d7bbd3489440 189 SUPERFAMILY SSF53955 92 160 1.71E-6 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 PANTHER PTHR30118 3 293 2.2E-69 T 19-04-2016 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 SUPERFAMILY SSF53850 90 293 2.64E-39 T 19-04-2016 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 Pfam PF03466 LysR substrate binding domain 92 295 2.4E-26 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 SUPERFAMILY SSF46785 4 84 3.27E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 7.3E-18 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:3.40.190.10 89 168 1.1E-22 T 19-04-2016 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:3.40.190.10 270 296 1.1E-22 T 19-04-2016 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 PANTHER PTHR30118:SF4 3 293 2.2E-69 T 19-04-2016 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:3.40.190.10 169 266 4.1E-22 T 19-04-2016 AMED_2534 603c98400de2cafe53def7c8a539d2d8 296 Gene3D G3DSA:1.10.10.10 4 83 3.3E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 4.3E-9 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 4.3E-9 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 4.3E-9 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 SUPERFAMILY SSF103473 22 210 1.27E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 SUPERFAMILY SSF103473 259 469 1.27E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 Pfam PF07690 Major Facilitator Superfamily 27 420 4.0E-50 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 PANTHER PTHR23501 21 473 8.5E-102 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 PANTHER PTHR23501:SF64 21 473 8.5E-102 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 Gene3D G3DSA:1.20.1250.20 277 473 4.0E-15 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 Gene3D G3DSA:1.20.1250.20 22 199 1.8E-27 T 19-04-2016 AMED_6517 e29f9ad6258e7f75b756e6752f425613 481 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 428 2.0E-84 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Gene3D G3DSA:3.50.50.60 299 339 2.5E-7 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Gene3D G3DSA:3.50.50.60 179 221 2.5E-7 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 SUPERFAMILY SSF51905 295 413 5.44E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 SUPERFAMILY SSF51905 9 228 5.44E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Pfam PF00743 Flavin-binding monooxygenase-like 9 343 4.1E-16 T 19-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 PANTHER PTHR23023 4 484 3.5E-211 T 19-04-2016 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Gene3D G3DSA:3.50.50.60 380 482 2.9E-77 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 Gene3D G3DSA:3.50.50.60 6 178 2.9E-77 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7690 ce32fb11b7f9b2ccc7d2300e92db00d7 485 PANTHER PTHR23023:SF132 4 484 3.5E-211 T 19-04-2016 AMED_0974 b76d197e933235e78fa2925b3b72b545 196 PANTHER PTHR37938 3 162 1.2E-26 T 19-04-2016 AMED_0974 b76d197e933235e78fa2925b3b72b545 196 Pfam PF03703 Bacterial PH domain 80 152 2.2E-17 T 19-04-2016 IPR005182 Domain of unknown function DUF304 AMED_0974 b76d197e933235e78fa2925b3b72b545 196 PANTHER PTHR37938:SF1 3 162 1.2E-26 T 19-04-2016 AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 PANTHER PTHR18866:SF74 168 274 9.0E-18 T 19-04-2016 AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 SMART SM00797 20 276 1.3E-89 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 Gene3D G3DSA:2.40.100.10 169 275 8.5E-9 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 SUPERFAMILY SSF50891 168 275 7.21E-12 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 PANTHER PTHR18866:SF74 119 146 9.0E-18 T 19-04-2016 AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 275 3.6E-85 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 Pfam PF02626 Allophanate hydrolase subunit 2 21 274 3.2E-82 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 PANTHER PTHR18866 168 274 9.0E-18 T 19-04-2016 AMED_9017 8b954ccef2ac302188d9ec3488176d0c 276 PANTHER PTHR18866 119 146 9.0E-18 T 19-04-2016 AMED_8993 cf69e1142b36817d342159a7439243cf 331 PANTHER PTHR16222:SF12 4 317 7.1E-38 T 19-04-2016 AMED_8993 cf69e1142b36817d342159a7439243cf 331 Pfam PF03747 ADP-ribosylglycohydrolase 9 302 4.0E-55 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_8993 cf69e1142b36817d342159a7439243cf 331 SUPERFAMILY SSF101478 3 327 8.76E-60 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_8993 cf69e1142b36817d342159a7439243cf 331 PANTHER PTHR16222 4 317 7.1E-38 T 19-04-2016 AMED_8433 8bc64caca09e85062183e48e5cef35ab 167 Gene3D G3DSA:3.40.630.30 18 149 8.4E-16 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8433 8bc64caca09e85062183e48e5cef35ab 167 SUPERFAMILY SSF55729 18 157 4.87E-18 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8433 8bc64caca09e85062183e48e5cef35ab 167 Pfam PF00583 Acetyltransferase (GNAT) family 67 140 7.0E-8 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 PANTHER PTHR31151:SF4 53 783 2.2E-97 T 19-04-2016 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 SUPERFAMILY SSF50370 675 813 3.43E-40 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 SMART SM00458 675 812 0.26 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 SMART SM00458 814 951 0.4 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Gene3D G3DSA:2.80.10.50 755 849 1.8E-23 T 19-04-2016 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Gene3D G3DSA:2.80.10.50 658 754 6.1E-21 T 19-04-2016 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Gene3D G3DSA:2.80.10.50 850 950 1.5E-20 T 19-04-2016 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 853 937 1.2E-18 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 761 844 4.2E-17 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 667 752 5.3E-21 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 SUPERFAMILY SSF48208 94 372 3.63E-15 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 110 549 2.4E-68 T 19-04-2016 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 SUPERFAMILY SSF50370 812 950 4.69E-39 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3579 ce1432f4e84e53771f6910e0b67ab27d 951 PANTHER PTHR31151 53 783 2.2E-97 T 19-04-2016 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 247 257 1.0E-25 T 19-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 9 19 1.0E-25 T 19-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 92 111 1.0E-25 T 19-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 336 357 1.0E-25 T 19-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 PRINTS PR00171 Sugar transporter signature 359 371 1.0E-25 T 19-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 SUPERFAMILY SSF103473 3 434 3.27E-72 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 ProSitePatterns PS00217 Sugar transport proteins signature 2. 97 122 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 ProSitePatterns PS00216 Sugar transport proteins signature 1. 291 307 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 3 433 2.1E-105 T 19-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 PANTHER PTHR23500 3 440 1.9E-157 T 19-04-2016 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 Pfam PF00083 Sugar (and other) transporter 3 435 2.8E-104 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 Gene3D G3DSA:1.20.1250.20 238 432 2.1E-22 T 19-04-2016 AMED_5178 7bca9c75fb3411f42d23e35cc3851aeb 447 Gene3D G3DSA:1.20.1250.20 5 187 9.7E-29 T 19-04-2016 AMED_1510 2a5102f4c3ba469344fe84d968387ff0 103 Gene3D G3DSA:1.10.10.10 3 98 1.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1510 2a5102f4c3ba469344fe84d968387ff0 103 Pfam PF13601 Winged helix DNA-binding domain 22 97 9.8E-24 T 19-04-2016 IPR027395 Winged helix DNA-binding domain AMED_1510 2a5102f4c3ba469344fe84d968387ff0 103 SUPERFAMILY SSF46785 22 99 3.54E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1510 2a5102f4c3ba469344fe84d968387ff0 103 PANTHER PTHR37318 1 102 6.3E-21 T 19-04-2016 AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 9 150 1.3E-60 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 ProSitePatterns PS01317 SsrA-binding protein. 28 40 - T 19-04-2016 IPR020081 SsrA-binding protein, conserved site AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 PANTHER PTHR30308 1 156 4.1E-83 T 19-04-2016 AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 156 75.575 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 SUPERFAMILY SSF74982 3 133 1.83E-54 T 19-04-2016 IPR023620 Small protein B AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 Pfam PF01668 SmpB protein 9 72 5.6E-31 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 Gene3D G3DSA:2.40.280.10 8 128 4.3E-54 T 19-04-2016 IPR023620 Small protein B AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 10 133 9.0E-54 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMED_1253 16d72adaf2d45b6e3b95350ec8bfe40e 160 PANTHER PTHR30308:SF2 1 156 4.1E-83 T 19-04-2016 AMED_8588 fd2488d6f249ca9f17795eab3bed549b 242 Pfam PF00691 OmpA family 145 236 1.5E-13 T 19-04-2016 IPR006665 OmpA-like domain AMED_8588 fd2488d6f249ca9f17795eab3bed549b 242 SUPERFAMILY SSF103088 139 241 4.05E-16 T 19-04-2016 IPR006665 OmpA-like domain AMED_8588 fd2488d6f249ca9f17795eab3bed549b 242 Gene3D G3DSA:3.30.1330.60 130 241 2.6E-18 T 19-04-2016 IPR006665 OmpA-like domain AMED_2432 c4b49873f48aa2006ab12a2b47bb3408 387 Pfam PF02470 MlaD protein 43 118 7.9E-18 T 19-04-2016 IPR003399 Mce/MlaD AMED_2432 c4b49873f48aa2006ab12a2b47bb3408 387 PANTHER PTHR33371 16 325 4.3E-102 T 19-04-2016 AMED_2432 c4b49873f48aa2006ab12a2b47bb3408 387 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 304 3.9E-63 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_2432 c4b49873f48aa2006ab12a2b47bb3408 387 PANTHER PTHR33371:SF6 16 325 4.3E-102 T 19-04-2016 AMED_2432 c4b49873f48aa2006ab12a2b47bb3408 387 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 173 285 1.1E-8 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_3166 3f95f701f358f190fb2ad05ed1fb10e2 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.4E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3166 3f95f701f358f190fb2ad05ed1fb10e2 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.4E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3166 3f95f701f358f190fb2ad05ed1fb10e2 205 SUPERFAMILY SSF46689 2 80 3.39E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3166 3f95f701f358f190fb2ad05ed1fb10e2 205 PANTHER PTHR30055 1 178 4.5E-23 T 19-04-2016 AMED_3166 3f95f701f358f190fb2ad05ed1fb10e2 205 Gene3D G3DSA:1.10.357.10 3 181 3.0E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3166 3f95f701f358f190fb2ad05ed1fb10e2 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 7.3E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4170 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 5 29 2.7E-5 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_4170 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 Gene3D G3DSA:3.20.20.140 187 373 1.0E-17 T 19-04-2016 AMED_4170 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 SUPERFAMILY SSF89550 187 388 6.41E-32 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_4170 3c38f1cb9e5dabdc70e7c3fb1a11c927 502 SMART SM00481 190 254 0.0036 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_4201 d74e633b7b327785c2cbd04080971642 187 SUPERFAMILY SSF48498 80 181 9.04E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4201 d74e633b7b327785c2cbd04080971642 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 33 64 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_4201 d74e633b7b327785c2cbd04080971642 187 Gene3D G3DSA:1.10.10.60 14 59 5.5E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4201 d74e633b7b327785c2cbd04080971642 187 Gene3D G3DSA:1.10.357.10 60 183 7.6E-12 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4201 d74e633b7b327785c2cbd04080971642 187 PANTHER PTHR30055 4 177 7.9E-16 T 19-04-2016 AMED_4201 d74e633b7b327785c2cbd04080971642 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 65 1.8E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4201 d74e633b7b327785c2cbd04080971642 187 PANTHER PTHR30055:SF40 4 177 7.9E-16 T 19-04-2016 AMED_4201 d74e633b7b327785c2cbd04080971642 187 SUPERFAMILY SSF46689 13 72 2.94E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4201 d74e633b7b327785c2cbd04080971642 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 4.6E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4201 d74e633b7b327785c2cbd04080971642 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 4.6E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5668 0bc7dcd75279f12014e6a247c2f753b8 417 Gene3D G3DSA:3.90.550.10 22 214 1.9E-19 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5668 0bc7dcd75279f12014e6a247c2f753b8 417 Pfam PF04138 GtrA-like protein 291 407 3.0E-9 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_5668 0bc7dcd75279f12014e6a247c2f753b8 417 Pfam PF00535 Glycosyl transferase family 2 24 186 3.0E-22 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_5668 0bc7dcd75279f12014e6a247c2f753b8 417 SUPERFAMILY SSF53448 14 232 9.38E-36 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5668 0bc7dcd75279f12014e6a247c2f753b8 417 PANTHER PTHR10859 2 371 2.7E-49 T 19-04-2016 AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 Pfam PF00668 Condensation domain 123 281 4.6E-21 T 19-04-2016 IPR001242 Condensation domain AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 SUPERFAMILY SSF52777 265 477 9.64E-25 T 19-04-2016 AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 PANTHER PTHR24095:SF137 95 478 1.6E-30 T 19-04-2016 AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 Pfam PF00550 Phosphopantetheine attachment site 14 74 4.6E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 PANTHER PTHR24095 95 478 1.6E-30 T 19-04-2016 AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 SMART SM00823 Phosphopantetheine attachment site 11 79 9.1E-6 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 SUPERFAMILY SSF47336 12 85 5.76E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 SUPERFAMILY SSF52777 95 278 6.0E-31 T 19-04-2016 AMED_5396 ca3d18db1136cc785a7faf75e5420e5a 488 Gene3D G3DSA:1.10.1200.10 13 77 6.4E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Pfam PF00072 Response regulator receiver domain 4 112 5.6E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 3.3E-27 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 SUPERFAMILY SSF52172 4 181 1.51E-41 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Gene3D G3DSA:3.40.50.2300 3 123 3.5E-38 T 19-04-2016 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 SMART SM00862 145 221 6.7E-29 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 PANTHER PTHR26402 2 223 9.1E-94 T 19-04-2016 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 SMART SM00448 2 112 3.3E-40 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 PANTHER PTHR26402:SF50 2 223 9.1E-94 T 19-04-2016 AMED_3766 5f4ad55e3cf22fdb6f0f7439411bf90e 224 Gene3D G3DSA:1.10.10.10 127 222 2.2E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0991 0a12d6908256433f1bf192a2a69b614b 402 Pfam PF09594 Protein of unknown function (DUF2029) 75 312 2.3E-42 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_1462 1e9a8383f4183a8162f4ff378217151b 311 Pfam PF00682 HMGL-like 14 286 8.7E-48 T 19-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMED_1462 1e9a8383f4183a8162f4ff378217151b 311 PANTHER PTHR10277:SF1 5 305 3.7E-148 T 19-04-2016 AMED_1462 1e9a8383f4183a8162f4ff378217151b 311 Gene3D G3DSA:3.20.20.70 13 301 4.7E-78 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1462 1e9a8383f4183a8162f4ff378217151b 311 PANTHER PTHR10277 5 305 3.7E-148 T 19-04-2016 AMED_1462 1e9a8383f4183a8162f4ff378217151b 311 SUPERFAMILY SSF51569 9 301 3.08E-67 T 19-04-2016 AMED_4085 51db2a271e21c6ae8738caebb4c4bcd2 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 259 2.3E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4085 51db2a271e21c6ae8738caebb4c4bcd2 271 SUPERFAMILY SSF161098 3 270 1.78E-48 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4085 51db2a271e21c6ae8738caebb4c4bcd2 271 Gene3D G3DSA:1.10.3720.10 2 258 8.7E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4085 51db2a271e21c6ae8738caebb4c4bcd2 271 PANTHER PTHR32243:SF28 1 271 3.3E-114 T 19-04-2016 AMED_4085 51db2a271e21c6ae8738caebb4c4bcd2 271 PANTHER PTHR32243 1 271 3.3E-114 T 19-04-2016 AMED_1781 c03a4a7ee6d865305424044efdf73fab 264 PANTHER PTHR30188:SF4 16 263 1.6E-86 T 19-04-2016 AMED_1781 c03a4a7ee6d865305424044efdf73fab 264 Pfam PF02405 Permease MlaE 44 253 1.9E-65 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_1781 c03a4a7ee6d865305424044efdf73fab 264 PANTHER PTHR30188 16 263 1.6E-86 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_6342 7d5a308ba5c2475f69558f8f3086de14 311 Pfam PF14530 Domain of unknown function (DUF4439) 175 310 8.0E-39 T 19-04-2016 IPR029447 Domain of unknown function DUF4439 AMED_6342 7d5a308ba5c2475f69558f8f3086de14 311 SUPERFAMILY SSF47240 168 307 7.3E-33 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_6342 7d5a308ba5c2475f69558f8f3086de14 311 Gene3D G3DSA:1.20.1260.10 169 298 7.7E-40 T 19-04-2016 IPR012347 Ferritin-related AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 SMART SM00411 2 90 1.0E-30 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.7E-13 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.7E-13 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.7E-13 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 PANTHER PTHR33175:SF3 1 97 5.9E-35 T 19-04-2016 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 Pfam PF00216 Bacterial DNA-binding protein 3 89 7.4E-24 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 SUPERFAMILY SSF47729 3 93 8.39E-24 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 PANTHER PTHR33175 1 97 5.9E-35 T 19-04-2016 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 19-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMED_1725 dcb8eed6e17471c413651bd9589e4c93 261 Gene3D G3DSA:4.10.520.10 3 90 1.1E-26 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMED_6697 106dcb075e181002b3e74ccf401ce399 261 SUPERFAMILY SSF103473 4 259 3.79E-33 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6697 106dcb075e181002b3e74ccf401ce399 261 PANTHER PTHR23508 1 261 1.0E-50 T 19-04-2016 AMED_6697 106dcb075e181002b3e74ccf401ce399 261 Gene3D G3DSA:1.20.1250.20 75 257 7.8E-17 T 19-04-2016 AMED_6697 106dcb075e181002b3e74ccf401ce399 261 ProSitePatterns PS00216 Sugar transport proteins signature 1. 131 148 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_6697 106dcb075e181002b3e74ccf401ce399 261 Pfam PF07690 Major Facilitator Superfamily 4 216 2.4E-17 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 PANTHER PTHR33375:SF1 65 326 7.3E-95 T 19-04-2016 AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 Gene3D G3DSA:3.90.1530.10 62 161 1.5E-38 T 19-04-2016 AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 SUPERFAMILY SSF109709 147 256 1.54E-31 T 19-04-2016 AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 PANTHER PTHR33375 65 326 7.3E-95 T 19-04-2016 AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 SUPERFAMILY SSF110849 59 158 1.99E-28 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 Pfam PF02195 ParB-like nuclease domain 66 155 9.1E-24 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 SMART SM00470 65 155 1.5E-31 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_9359 da18b3ea4a424036ad89379daeca1d43 333 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 63 240 6.7E-62 T 19-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMED_5218 dd55b0ff3b0cc4da8075b027955a7edc 154 Gene3D G3DSA:3.30.530.20 4 132 2.0E-7 T 19-04-2016 IPR023393 START-like domain AMED_5218 dd55b0ff3b0cc4da8075b027955a7edc 154 SUPERFAMILY SSF55961 1 139 3.54E-26 T 19-04-2016 AMED_5218 dd55b0ff3b0cc4da8075b027955a7edc 154 PANTHER PTHR33824:SF2 1 150 8.6E-42 T 19-04-2016 AMED_5218 dd55b0ff3b0cc4da8075b027955a7edc 154 PANTHER PTHR33824 1 150 8.6E-42 T 19-04-2016 AMED_5218 dd55b0ff3b0cc4da8075b027955a7edc 154 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 128 1.7E-18 T 19-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain AMED_0611 087141f56955aeebce54ca0b19cee82b 325 PANTHER PTHR37042:SF2 72 303 2.2E-25 T 19-04-2016 AMED_0611 087141f56955aeebce54ca0b19cee82b 325 PANTHER PTHR37042 72 303 2.2E-25 T 19-04-2016 AMED_2570 e56c6832dd379d760da6b1020e83417a 494 Gene3D G3DSA:3.40.50.150 150 308 6.4E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2570 e56c6832dd379d760da6b1020e83417a 494 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 221 227 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMED_2570 e56c6832dd379d760da6b1020e83417a 494 PANTHER PTHR18895:SF64 156 338 2.6E-24 T 19-04-2016 AMED_2570 e56c6832dd379d760da6b1020e83417a 494 Pfam PF05175 Methyltransferase small domain 141 232 3.6E-16 T 19-04-2016 IPR007848 Methyltransferase small domain GO:0008168 AMED_2570 e56c6832dd379d760da6b1020e83417a 494 PANTHER PTHR18895 156 338 2.6E-24 T 19-04-2016 AMED_2570 e56c6832dd379d760da6b1020e83417a 494 SUPERFAMILY SSF53335 147 288 1.81E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 Pfam PF00270 DEAD/DEAH box helicase 50 216 4.0E-20 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 PANTHER PTHR24031:SF122 32 537 5.1E-113 T 19-04-2016 AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 Pfam PF00271 Helicase conserved C-terminal domain 278 386 1.6E-8 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 SMART SM00487 44 246 2.5E-25 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 SMART SM00490 305 386 1.1E-12 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 PANTHER PTHR24031 32 537 5.1E-113 T 19-04-2016 AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 Gene3D G3DSA:3.40.50.300 274 428 2.8E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 TIGRFAM TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase 12 644 5.2E-297 T 19-04-2016 IPR022307 DEAD/DEAH-box helicase, putative, actinobacteria AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 SUPERFAMILY SSF52540 62 117 6.65E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 SUPERFAMILY SSF52540 303 445 6.65E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 SUPERFAMILY SSF52540 31 231 2.6E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 Gene3D G3DSA:3.40.50.300 24 225 1.4E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8799 7d7f174e1e5f7f6b70bd4c5b448f1286 854 Pfam PF09369 Domain of unknown function (DUF1998) 742 821 5.6E-18 T 19-04-2016 IPR018973 DEAD/DEAH-box helicase, putative AMED_0204 b5a715676663ece181e3eda5443f8840 170 Gene3D G3DSA:1.10.10.10 99 154 4.6E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0204 b5a715676663ece181e3eda5443f8840 170 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 4 155 5.5E-49 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_0204 b5a715676663ece181e3eda5443f8840 170 Pfam PF08281 Sigma-70, region 4 101 153 5.5E-14 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0204 b5a715676663ece181e3eda5443f8840 170 Gene3D G3DSA:1.10.1740.10 5 77 2.3E-13 T 19-04-2016 AMED_0204 b5a715676663ece181e3eda5443f8840 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 154 1.9E-18 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0204 b5a715676663ece181e3eda5443f8840 170 Pfam PF04542 Sigma-70 region 2 12 74 4.8E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0204 b5a715676663ece181e3eda5443f8840 170 SUPERFAMILY SSF88659 86 156 2.24E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0204 b5a715676663ece181e3eda5443f8840 170 PANTHER PTHR30173 1 167 5.5E-26 T 19-04-2016 AMED_0204 b5a715676663ece181e3eda5443f8840 170 SUPERFAMILY SSF88946 4 73 4.32E-11 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 Gene3D G3DSA:2.20.25.10 3 44 6.0E-18 T 19-04-2016 AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 5 137 1.2E-52 T 19-04-2016 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 PANTHER PTHR33797 1 140 1.2E-65 T 19-04-2016 AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 Gene3D G3DSA:3.30.300.20 47 138 1.0E-38 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 Pfam PF02566 OsmC-like protein 42 136 1.5E-19 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 SUPERFAMILY SSF82784 1 137 5.89E-43 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_8871 1f5edd26133bc28461ee54b5eea2db27 140 PANTHER PTHR33797:SF2 1 140 1.2E-65 T 19-04-2016 AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 Gene3D G3DSA:3.40.50.720 15 202 4.3E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 21 195 4.5E-47 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 SUPERFAMILY SSF51735 19 197 7.24E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 PANTHER PTHR23309 4 321 5.1E-96 T 19-04-2016 AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 PANTHER PTHR23309:SF17 4 321 5.1E-96 T 19-04-2016 AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 Gene3D G3DSA:1.10.1040.10 203 266 2.4E-9 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 201 265 1.8E-12 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_3267 3d9230c1381c5cd0cccc60c2515b9074 328 SUPERFAMILY SSF48179 201 290 1.02E-13 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_0941 6459ad6f76be683cd4634c73ce8b0476 208 Gene3D G3DSA:1.10.10.10 9 93 5.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0941 6459ad6f76be683cd4634c73ce8b0476 208 SUPERFAMILY SSF46785 9 181 1.54E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0941 6459ad6f76be683cd4634c73ce8b0476 208 PANTHER PTHR33169 1 194 5.6E-14 T 19-04-2016 AMED_0941 6459ad6f76be683cd4634c73ce8b0476 208 Pfam PF03551 Transcriptional regulator PadR-like family 13 88 5.4E-12 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_6863 a887f63988da0f1d9b16ddf8afb3e308 150 Gene3D G3DSA:3.10.129.10 3 140 4.2E-26 T 19-04-2016 IPR029069 HotDog domain AMED_6863 a887f63988da0f1d9b16ddf8afb3e308 150 Pfam PF13279 Thioesterase-like superfamily 11 136 8.9E-8 T 19-04-2016 AMED_6863 a887f63988da0f1d9b16ddf8afb3e308 150 SUPERFAMILY SSF54637 5 140 1.84E-23 T 19-04-2016 IPR029069 HotDog domain AMED_1409 73195e2158e8cc665ce7ade22fa7c527 283 SUPERFAMILY SSF117396 3 259 4.45E-64 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_1409 73195e2158e8cc665ce7ade22fa7c527 283 PANTHER PTHR30348 3 283 1.6E-58 T 19-04-2016 AMED_1409 73195e2158e8cc665ce7ade22fa7c527 283 Pfam PF01904 Protein of unknown function DUF72 22 258 2.7E-50 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_1409 73195e2158e8cc665ce7ade22fa7c527 283 Gene3D G3DSA:3.20.20.410 3 272 3.8E-64 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 SMART SM00382 36 219 1.5E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 SMART SM00382 285 479 1.5E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 PANTHER PTHR24220:SF308 13 385 1.8E-165 T 19-04-2016 AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 Gene3D G3DSA:3.40.50.300 264 493 2.5E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 Gene3D G3DSA:3.40.50.300 8 245 1.6E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 Pfam PF00005 ABC transporter 277 430 1.8E-20 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 Pfam PF00005 ABC transporter 29 177 8.3E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 SUPERFAMILY SSF52540 10 236 2.22E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 SUPERFAMILY SSF52540 275 492 2.21E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4539 86c0c37bac3d4561f805902006b8f29c 505 PANTHER PTHR24220 13 385 1.8E-165 T 19-04-2016 AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PANTHER PTHR24322 14 180 6.9E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 3.3E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.3E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 3.3E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 3.3E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 3.3E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 SUPERFAMILY SSF51735 11 197 1.83E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 3.5E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.5E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.5E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 Gene3D G3DSA:3.40.50.720 10 203 3.0E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 Pfam PF00106 short chain dehydrogenase 11 192 2.4E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1538 0decd07e6d2c627f598d07e9279c2b65 231 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PRINTS PR00111 Alpha/beta hydrolase fold signature 453 466 2.3E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PRINTS PR00111 Alpha/beta hydrolase fold signature 439 452 2.3E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PRINTS PR00111 Alpha/beta hydrolase fold signature 568 582 2.3E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 Gene3D G3DSA:3.40.50.1820 344 621 2.2E-61 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 Pfam PF00561 alpha/beta hydrolase fold 365 605 1.0E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 SUPERFAMILY SSF53474 341 620 7.37E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PANTHER PTHR10992:SF851 511 542 7.8E-44 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PANTHER PTHR10992:SF851 561 624 7.8E-44 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PANTHER PTHR10992:SF851 346 484 7.8E-44 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PANTHER PTHR10992 511 542 7.8E-44 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PANTHER PTHR10992 561 624 7.8E-44 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 PANTHER PTHR10992 346 484 7.8E-44 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 Gene3D G3DSA:3.40.50.2000 125 306 1.7E-19 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 SUPERFAMILY SSF53756 9 330 6.67E-48 T 19-04-2016 AMED_7950 0b4354f67e7f6c50f07c04b75bc77d60 636 Pfam PF00534 Glycosyl transferases group 1 149 306 4.5E-20 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_8395 165350c50ad05fdbe6035677a8598736 146 SUPERFAMILY SSF55729 2 144 4.43E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8395 165350c50ad05fdbe6035677a8598736 146 Gene3D G3DSA:3.40.630.30 3 143 9.5E-34 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8395 165350c50ad05fdbe6035677a8598736 146 Pfam PF00583 Acetyltransferase (GNAT) family 59 133 1.4E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8395 165350c50ad05fdbe6035677a8598736 146 PANTHER PTHR10545 3 143 4.6E-34 T 19-04-2016 AMED_9087 3ee2ed4e20075d7d22865af64689c12e 378 PANTHER PTHR23344 9 368 3.5E-100 T 19-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 AMED_9087 3ee2ed4e20075d7d22865af64689c12e 378 PANTHER PTHR23344:SF7 9 368 3.5E-100 T 19-04-2016 AMED_9087 3ee2ed4e20075d7d22865af64689c12e 378 SUPERFAMILY SSF51695 47 371 1.96E-71 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_9087 3ee2ed4e20075d7d22865af64689c12e 378 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 52 367 6.3E-44 T 19-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMED_9087 3ee2ed4e20075d7d22865af64689c12e 378 Gene3D G3DSA:3.20.20.190 46 371 5.9E-85 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_6348 34402ef7f39a90564c2cc648cce2103c 216 Gene3D G3DSA:1.10.3630.10 2 210 4.6E-19 T 19-04-2016 AMED_6348 34402ef7f39a90564c2cc648cce2103c 216 Pfam PF05719 Golgi phosphoprotein 3 (GPP34) 6 199 2.2E-38 T 19-04-2016 IPR008628 Golgi phosphoprotein 3 GO:0048193|GO:0070273 AMED_3933 f91007117114c59dfefa014795db8cb7 491 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 342 428 8.2E-23 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3933 f91007117114c59dfefa014795db8cb7 491 SUPERFAMILY SSF50370 350 489 7.12E-40 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3933 f91007117114c59dfefa014795db8cb7 491 Pfam PF04616 Glycosyl hydrolases family 43 83 266 1.1E-20 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3933 f91007117114c59dfefa014795db8cb7 491 Gene3D G3DSA:2.115.10.20 61 280 1.9E-31 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3933 f91007117114c59dfefa014795db8cb7 491 SMART SM00458 353 491 1.2E-14 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3933 f91007117114c59dfefa014795db8cb7 491 SUPERFAMILY SSF75005 60 340 2.14E-49 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3933 f91007117114c59dfefa014795db8cb7 491 Gene3D G3DSA:2.80.10.50 337 439 2.3E-28 T 19-04-2016 AMED_3933 f91007117114c59dfefa014795db8cb7 491 PANTHER PTHR22925 88 342 1.4E-93 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3933 f91007117114c59dfefa014795db8cb7 491 PANTHER PTHR22925:SF43 88 342 1.4E-93 T 19-04-2016 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 183 2.2E-12 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 SUPERFAMILY SSF88946 10 108 2.38E-17 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 Pfam PF04542 Sigma-70 region 2 35 93 8.3E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 Gene3D G3DSA:1.10.1740.10 12 125 1.4E-19 T 19-04-2016 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 PANTHER PTHR30173:SF13 6 182 2.7E-31 T 19-04-2016 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 Pfam PF13490 Putative zinc-finger 199 233 9.9E-8 T 19-04-2016 IPR027383 Putative zinc-finger AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 PANTHER PTHR30173 6 182 2.7E-31 T 19-04-2016 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 SUPERFAMILY SSF88659 125 183 9.72E-6 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0128 47b8c690d7545240a4177701e3e8fde3 553 Gene3D G3DSA:1.10.10.10 127 184 5.3E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0762 4df212b110037bd8bbe612820da8c046 97 SUPERFAMILY SSF50129 3 97 6.88E-35 T 19-04-2016 IPR011032 GroES-like AMED_0762 4df212b110037bd8bbe612820da8c046 97 PANTHER PTHR10772:SF0 4 97 2.2E-41 T 19-04-2016 AMED_0762 4df212b110037bd8bbe612820da8c046 97 Pfam PF00166 Chaperonin 10 Kd subunit 4 96 1.4E-35 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 Hamap MF_00580 10 kDa chaperonin [groS]. 4 97 26.133 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 PANTHER PTHR10772 4 97 2.2E-41 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 SMART SM00883 4 96 8.6E-54 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 5 20 1.5E-30 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 83 96 1.5E-30 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 27 48 1.5E-30 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 PRINTS PR00297 10kDa chaperonin signature 62 74 1.5E-30 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 5 29 - T 19-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMED_0762 4df212b110037bd8bbe612820da8c046 97 Gene3D G3DSA:2.30.33.40 4 96 6.7E-38 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMED_2788 45f55380f5925860a72970a9e89319e1 277 Pfam PF01218 Coproporphyrinogen III oxidase 60 268 5.7E-74 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2788 45f55380f5925860a72970a9e89319e1 277 PRINTS PR00073 Coprogen oxidase signature 40 61 1.1E-7 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2788 45f55380f5925860a72970a9e89319e1 277 PRINTS PR00073 Coprogen oxidase signature 206 233 1.1E-7 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2788 45f55380f5925860a72970a9e89319e1 277 PANTHER PTHR10755 3 270 3.0E-87 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2788 45f55380f5925860a72970a9e89319e1 277 SUPERFAMILY SSF102886 5 269 4.05E-78 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_2788 45f55380f5925860a72970a9e89319e1 277 Gene3D G3DSA:3.40.1500.10 60 269 2.4E-72 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMED_7744 a284322956f45c7efeca138893f2b7e7 131 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 126 3.2E-31 T 19-04-2016 IPR023370 TsaA-like domain AMED_7744 a284322956f45c7efeca138893f2b7e7 131 ProSitePatterns PS01318 TsaA-like domain signature. 77 88 - T 19-04-2016 IPR023368 Uncharacterised protein family UPF0066, conserved site AMED_7744 a284322956f45c7efeca138893f2b7e7 131 SUPERFAMILY SSF118196 2 126 7.45E-36 T 19-04-2016 IPR023370 TsaA-like domain AMED_7744 a284322956f45c7efeca138893f2b7e7 131 Gene3D G3DSA:2.40.30.70 1 127 1.5E-36 T 19-04-2016 IPR023370 TsaA-like domain AMED_7744 a284322956f45c7efeca138893f2b7e7 131 PANTHER PTHR12818 1 123 1.2E-33 T 19-04-2016 AMED_7744 a284322956f45c7efeca138893f2b7e7 131 Pfam PF01980 Uncharacterised protein family UPF0066 17 125 1.1E-26 T 19-04-2016 IPR023370 TsaA-like domain AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 SMART SM00636 30 318 0.0064 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 PANTHER PTHR11177 1 328 8.6E-28 T 19-04-2016 AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 Pfam PF00704 Glycosyl hydrolases family 18 32 252 1.2E-19 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 SUPERFAMILY SSF51445 29 325 8.21E-40 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 ProSitePatterns PS01095 Chitinases family 18 active site. 144 152 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 Gene3D G3DSA:3.20.20.80 30 325 3.8E-41 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1035 f73a296dee95cb3643be5fe98424b16b 335 PANTHER PTHR11177:SF195 1 328 8.6E-28 T 19-04-2016 AMED_3214 55bea1c001b304d8a5813cce61b514f8 371 SUPERFAMILY SSF56601 38 344 1.83E-79 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3214 55bea1c001b304d8a5813cce61b514f8 371 Gene3D G3DSA:3.40.710.10 46 330 8.0E-81 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3214 55bea1c001b304d8a5813cce61b514f8 371 Pfam PF00144 Beta-lactamase 40 362 2.9E-64 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3214 55bea1c001b304d8a5813cce61b514f8 371 PANTHER PTHR22935 30 329 1.4E-68 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PANTHER PTHR13789:SF246 3 378 4.1E-167 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 SUPERFAMILY SSF51905 2 168 1.65E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 SUPERFAMILY SSF51905 268 370 1.65E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 Gene3D G3DSA:3.50.50.60 269 344 2.8E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 Gene3D G3DSA:3.50.50.60 2 174 2.8E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.8E-11 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 1.8E-11 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 1.8E-11 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 1.8E-11 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 PANTHER PTHR13789 3 378 4.1E-167 T 19-04-2016 AMED_3971 9f192f6ac3087f9fbc5fa2cad60abcfb 394 Pfam PF01494 FAD binding domain 4 324 2.1E-16 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5596 379713ffc128b0b3f7b3a3491477d19b 295 PANTHER PTHR14226 9 73 3.0E-16 T 19-04-2016 AMED_5596 379713ffc128b0b3f7b3a3491477d19b 295 PANTHER PTHR14226 89 197 3.0E-16 T 19-04-2016 AMED_5596 379713ffc128b0b3f7b3a3491477d19b 295 SUPERFAMILY SSF52151 8 213 9.68E-29 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_5596 379713ffc128b0b3f7b3a3491477d19b 295 Pfam PF01734 Patatin-like phospholipase 14 204 1.5E-18 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMED_5596 379713ffc128b0b3f7b3a3491477d19b 295 Gene3D G3DSA:3.40.1090.10 45 204 1.3E-4 T 19-04-2016 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PANTHER PTHR11732:SF136 11 287 6.9E-118 T 19-04-2016 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 Gene3D G3DSA:3.20.20.100 19 287 2.9E-62 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 SUPERFAMILY SSF51430 19 287 5.76E-62 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 222 246 8.0E-18 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 117 135 8.0E-18 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 152 169 8.0E-18 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 186 215 8.0E-18 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PRINTS PR00069 Aldo-keto reductase signature 52 76 8.0E-18 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 Pfam PF00248 Aldo/keto reductase family 23 286 1.7E-44 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0458 3a132e0731adb423ab59b2b7acad8fcb 289 PANTHER PTHR11732 11 287 6.9E-118 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_5093 2369a654e797ddd44923f869e3848b82 320 PANTHER PTHR34861:SF5 2 320 1.6E-120 T 19-04-2016 AMED_5093 2369a654e797ddd44923f869e3848b82 320 SUPERFAMILY SSF102198 97 319 1.14E-21 T 19-04-2016 AMED_5093 2369a654e797ddd44923f869e3848b82 320 Gene3D G3DSA:3.50.30.50 94 319 7.7E-26 T 19-04-2016 AMED_5093 2369a654e797ddd44923f869e3848b82 320 Pfam PF04199 Putative cyclase 85 251 5.4E-20 T 19-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 AMED_5093 2369a654e797ddd44923f869e3848b82 320 PANTHER PTHR34861 2 320 1.6E-120 T 19-04-2016 AMED_0343 4b0113c6b05a00c41c029c2eca9512cd 344 Pfam PF01513 ATP-NAD kinase 8 278 8.1E-18 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_0343 4b0113c6b05a00c41c029c2eca9512cd 344 Gene3D G3DSA:3.40.50.10330 91 136 5.9E-4 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_0343 4b0113c6b05a00c41c029c2eca9512cd 344 PIRSF PIRSF018567 2 340 9.8E-107 T 19-04-2016 IPR011391 Acetoin catabolism kinase AcoX UniPathway: UPA00040 AMED_0343 4b0113c6b05a00c41c029c2eca9512cd 344 SUPERFAMILY SSF111331 83 142 5.36E-8 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_6239 8eca4fe476fa4cc1078f3e413e7c2fce 247 Gene3D G3DSA:3.10.129.10 98 244 1.3E-7 T 19-04-2016 IPR029069 HotDog domain AMED_6239 8eca4fe476fa4cc1078f3e413e7c2fce 247 SUPERFAMILY SSF54637 89 241 5.74E-8 T 19-04-2016 IPR029069 HotDog domain AMED_5103 482e172838ebf185e2eadd4763b5e232 421 Gene3D G3DSA:3.40.50.1110 201 405 2.3E-19 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_5103 482e172838ebf185e2eadd4763b5e232 421 SUPERFAMILY SSF52266 200 405 5.19E-31 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_5103 482e172838ebf185e2eadd4763b5e232 421 PANTHER PTHR30383:SF3 49 412 4.2E-42 T 19-04-2016 AMED_5103 482e172838ebf185e2eadd4763b5e232 421 PANTHER PTHR30383 49 412 4.2E-42 T 19-04-2016 AMED_5103 482e172838ebf185e2eadd4763b5e232 421 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 204 400 2.4E-16 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 6 144 1.0E-62 T 19-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 PANTHER PTHR11661 1 144 5.5E-71 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 Pfam PF03946 Ribosomal protein L11, N-terminal domain 12 69 2.2E-28 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 Gene3D G3DSA:1.10.10.250 75 143 1.1E-32 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 39 71 2.0E-12 T 19-04-2016 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 8 144 30.924 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 SMART SM00649 12 143 1.4E-83 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 Pfam PF00298 Ribosomal protein L11, RNA binding domain 74 142 4.4E-27 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 Gene3D G3DSA:3.30.1550.10 5 74 8.3E-37 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 SUPERFAMILY SSF46906 70 143 1.19E-26 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 SUPERFAMILY SSF54747 5 75 1.02E-28 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMED_0595 e8e2a78abbae1ae319575c0df80ce941 144 ProSitePatterns PS00359 Ribosomal protein L11 signature. 129 144 - T 19-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 PANTHER PTHR14413:SF5 1 118 2.1E-53 T 19-04-2016 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.7 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 SUPERFAMILY SSF64263 1 118 3.14E-45 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 Gene3D G3DSA:3.90.1030.10 4 116 4.9E-46 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 Pfam PF01196 Ribosomal protein L17 21 116 5.2E-36 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 PANTHER PTHR14413 1 118 2.1E-53 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0709 90f5522a71f2f6705d46d42a1a32c7db 182 TIGRFAM TIGR00059 L17: ribosomal protein bL17 9 116 1.3E-40 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PANTHER PTHR10169 7 655 2.5E-281 T 19-04-2016 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 SUPERFAMILY SSF56719 409 650 4.71E-81 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 SMART SM00433 37 648 0.0 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 586 643 3.8E-27 T 19-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Gene3D G3DSA:3.30.230.10 235 406 1.7E-74 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 ProSitePatterns PS00177 DNA topoisomerase II signature. 437 445 - T 19-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 655 8.5E-287 T 19-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 SUPERFAMILY SSF55874 7 211 7.86E-69 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF01751 Toprim domain 434 544 2.9E-16 T 19-04-2016 IPR006171 Toprim domain AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF00204 DNA gyrase B 236 405 4.2E-62 T 19-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 174 1.7E-23 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 485 494 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 375 389 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 608 620 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 327 343 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 235 257 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 624 640 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 389 409 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR01159 DNA gyrase subunit B signature 8 18 1.0E-72 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Gene3D G3DSA:3.40.50.670 419 637 2.5E-88 T 19-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 SUPERFAMILY SSF54211 236 406 1.23E-59 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 501 517 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 72 85 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 539 551 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 283 296 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 115 129 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 435 449 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 587 603 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 519 536 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 PRINTS PR00418 DNA topoisomerase II family signature 37 52 1.4E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 SMART SM00387 33 176 2.7E-26 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Gene3D G3DSA:3.30.565.10 8 215 5.1E-84 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0006 12fcd946a2ca88456fe5d6425cedd107 655 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 655 91.396 T 19-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 Pfam PF13377 Periplasmic binding protein-like domain 179 340 5.9E-42 T 19-04-2016 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 PANTHER PTHR30146:SF43 14 343 3.6E-165 T 19-04-2016 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 Gene3D G3DSA:3.40.50.2300 185 315 5.0E-53 T 19-04-2016 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 SUPERFAMILY SSF53822 72 346 1.99E-77 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 59 5.8E-12 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 Gene3D G3DSA:3.40.50.2300 65 184 1.3E-28 T 19-04-2016 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 Gene3D G3DSA:1.10.260.40 14 59 9.5E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 PANTHER PTHR30146 14 343 3.6E-165 T 19-04-2016 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 SMART SM00354 14 81 6.8E-7 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4513 a397f217cc1ca956f2e58b0da9218db6 356 SUPERFAMILY SSF47413 14 62 7.64E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8390 3bb21589df80df3e42eba6aab4d6bb0a 209 Gene3D G3DSA:2.60.120.590 12 205 7.7E-51 T 19-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMED_8390 3bb21589df80df3e42eba6aab4d6bb0a 209 PANTHER PTHR16557 13 205 3.4E-54 T 19-04-2016 IPR004574 Alkylated DNA repair protein AlkB GO:0006281|GO:0055114 AMED_8390 3bb21589df80df3e42eba6aab4d6bb0a 209 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 16 205 1.6E-45 T 19-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMED_8390 3bb21589df80df3e42eba6aab4d6bb0a 209 SUPERFAMILY SSF51197 13 206 1.65E-45 T 19-04-2016 AMED_2500 1de815b9c4fd55ad4dfffd6fc10ffa26 276 PANTHER PTHR30011:SF25 24 198 6.8E-56 T 19-04-2016 AMED_2500 1de815b9c4fd55ad4dfffd6fc10ffa26 276 SUPERFAMILY SSF51679 20 270 2.22E-53 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2500 1de815b9c4fd55ad4dfffd6fc10ffa26 276 Pfam PF00296 Luciferase-like monooxygenase 22 228 8.1E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2500 1de815b9c4fd55ad4dfffd6fc10ffa26 276 Gene3D G3DSA:3.20.20.30 21 227 2.2E-57 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2500 1de815b9c4fd55ad4dfffd6fc10ffa26 276 PANTHER PTHR30011 24 198 6.8E-56 T 19-04-2016 AMED_2500 1de815b9c4fd55ad4dfffd6fc10ffa26 276 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 19 251 2.5E-80 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_2154 ce626802f84124c554bbb5363c445f85 489 PANTHER PTHR23501:SF31 4 479 5.4E-159 T 19-04-2016 AMED_2154 ce626802f84124c554bbb5363c445f85 489 Gene3D G3DSA:1.20.1250.20 5 199 7.8E-34 T 19-04-2016 AMED_2154 ce626802f84124c554bbb5363c445f85 489 Gene3D G3DSA:1.20.1250.20 275 475 7.8E-21 T 19-04-2016 AMED_2154 ce626802f84124c554bbb5363c445f85 489 PRINTS PR01036 Tetracycline resistance protein TetB signature 15 39 1.4E-5 T 19-04-2016 AMED_2154 ce626802f84124c554bbb5363c445f85 489 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 1.4E-5 T 19-04-2016 AMED_2154 ce626802f84124c554bbb5363c445f85 489 PANTHER PTHR23501 4 479 5.4E-159 T 19-04-2016 AMED_2154 ce626802f84124c554bbb5363c445f85 489 SUPERFAMILY SSF103473 255 469 7.98E-68 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2154 ce626802f84124c554bbb5363c445f85 489 SUPERFAMILY SSF103473 6 197 7.98E-68 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2154 ce626802f84124c554bbb5363c445f85 489 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 428 6.1E-69 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_2154 ce626802f84124c554bbb5363c445f85 489 Pfam PF07690 Major Facilitator Superfamily 18 246 1.4E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2154 ce626802f84124c554bbb5363c445f85 489 Pfam PF07690 Major Facilitator Superfamily 281 478 1.6E-17 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 Pfam PF00107 Zinc-binding dehydrogenase 198 326 1.4E-24 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 SUPERFAMILY SSF50129 2 194 5.17E-59 T 19-04-2016 IPR011032 GroES-like AMED_3271 b1828636ef92a282faf0452f7514ad60 367 PANTHER PTHR11695 16 107 1.0E-122 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 PANTHER PTHR11695 128 367 1.0E-122 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 Gene3D G3DSA:3.40.50.720 191 303 8.4E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3271 b1828636ef92a282faf0452f7514ad60 367 Gene3D G3DSA:3.90.180.10 2 190 2.8E-53 T 19-04-2016 IPR011032 GroES-like AMED_3271 b1828636ef92a282faf0452f7514ad60 367 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 5.5E-24 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 SMART SM00829 13 365 9.2E-7 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 SUPERFAMILY SSF51735 160 334 1.23E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3271 b1828636ef92a282faf0452f7514ad60 367 PANTHER PTHR11695:SF571 16 107 1.0E-122 T 19-04-2016 AMED_3271 b1828636ef92a282faf0452f7514ad60 367 PANTHER PTHR11695:SF571 128 367 1.0E-122 T 19-04-2016 AMED_3779 4def6cfa9e7a7d486d0b677ed102f29e 313 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 6 151 1.2E-19 T 19-04-2016 IPR025847 MEDS domain AMED_3779 4def6cfa9e7a7d486d0b677ed102f29e 313 Gene3D G3DSA:3.40.1190.20 84 165 5.8E-4 T 19-04-2016 IPR029056 Ribokinase-like AMED_3779 4def6cfa9e7a7d486d0b677ed102f29e 313 Gene3D G3DSA:3.40.1190.20 197 238 5.8E-4 T 19-04-2016 IPR029056 Ribokinase-like AMED_3823 670801bf8434b51dec998a6fa1fa159c 404 PANTHER PTHR30483 39 351 8.6E-21 T 19-04-2016 AMED_3823 670801bf8434b51dec998a6fa1fa159c 404 SUPERFAMILY SSF53822 44 394 5.38E-41 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3823 670801bf8434b51dec998a6fa1fa159c 404 Pfam PF13458 Periplasmic binding protein 44 392 2.7E-42 T 19-04-2016 IPR028081 Leucine-binding protein domain AMED_3823 670801bf8434b51dec998a6fa1fa159c 404 Gene3D G3DSA:3.40.50.2300 44 238 2.4E-26 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 PANTHER PTHR24096 164 682 6.9E-148 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 ProSitePatterns PS00455 Putative AMP-binding domain signature. 344 355 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.30.300.30 582 679 6.5E-31 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Pfam PF13193 AMP-binding enzyme C-terminal domain 597 671 6.2E-22 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.40.50.980 195 357 8.1E-29 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 134 3.4E-6 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 SUPERFAMILY SSF56801 189 681 5.36E-123 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.40.50.980 371 500 4.1E-33 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 SUPERFAMILY SSF55961 6 139 1.32E-14 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 PANTHER PTHR24096:SF232 164 682 6.9E-148 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:2.30.38.10 511 581 7.6E-11 T 19-04-2016 AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Gene3D G3DSA:3.30.530.20 2 120 1.5E-6 T 19-04-2016 IPR023393 START-like domain AMED_5958 fcd84d3e65cf6c9ffd3fc3143fc75536 688 Pfam PF00501 AMP-binding enzyme 195 587 1.3E-65 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_2443 6a1bd674a4d069e958f80fd03375581c 296 SUPERFAMILY SSF161098 26 296 2.62E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2443 6a1bd674a4d069e958f80fd03375581c 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 282 2.3E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2443 6a1bd674a4d069e958f80fd03375581c 296 Gene3D G3DSA:1.10.3720.10 22 282 6.1E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2443 6a1bd674a4d069e958f80fd03375581c 296 PANTHER PTHR32243:SF31 20 296 1.1E-108 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_2443 6a1bd674a4d069e958f80fd03375581c 296 PANTHER PTHR32243 20 296 1.1E-108 T 19-04-2016 AMED_2060 35d53227a6cbd09514faead7471b3fd3 512 Gene3D G3DSA:3.50.50.60 202 294 7.7E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2060 35d53227a6cbd09514faead7471b3fd3 512 Gene3D G3DSA:3.50.50.60 1 70 7.7E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2060 35d53227a6cbd09514faead7471b3fd3 512 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 52 1.6E-10 T 19-04-2016 AMED_2060 35d53227a6cbd09514faead7471b3fd3 512 PANTHER PTHR10668:SF83 2 507 9.1E-121 T 19-04-2016 AMED_2060 35d53227a6cbd09514faead7471b3fd3 512 PANTHER PTHR10668 2 507 9.1E-121 T 19-04-2016 AMED_2060 35d53227a6cbd09514faead7471b3fd3 512 SUPERFAMILY SSF51905 1 309 3.7E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 SMART SM00387 410 523 1.5E-20 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:3.30.565.10 379 520 1.8E-23 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PANTHER PTHR24423 1 154 1.1E-70 T 19-04-2016 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PANTHER PTHR24423 187 520 1.1E-70 T 19-04-2016 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:1.10.287.130 304 361 2.4E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 465 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 520 1.9E-8 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 516 8.0E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Pfam PF17203 Single cache domain 3 32 157 2.7E-19 T 19-04-2016 IPR033463 Single cache domain 3 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 SUPERFAMILY SSF55890 317 363 8.76E-11 T 19-04-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 314 363 4.1E-12 T 19-04-2016 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:3.30.450.20 212 303 1.4E-5 T 19-04-2016 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 Gene3D G3DSA:3.30.450.20 28 165 4.7E-37 T 19-04-2016 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 SUPERFAMILY SSF55874 379 521 1.57E-23 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 SUPERFAMILY SSF103190 32 163 8.24E-24 T 19-04-2016 IPR029151 Periplasmic sensor domain-like AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PANTHER PTHR24423:SF375 1 154 1.1E-70 T 19-04-2016 AMED_0256 cd9eaab0a4208e4d1d68c51492fc40c7 527 PANTHER PTHR24423:SF375 187 520 1.1E-70 T 19-04-2016 AMED_6764 ba8bf30b52343b394f67c4ae16d19232 158 Pfam PF09900 Predicted membrane protein (DUF2127) 13 152 1.4E-26 T 19-04-2016 IPR021125 Protein of unknown function DUF2127 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 Gene3D G3DSA:1.10.630.10 19 370 7.4E-47 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 Pfam PF00067 Cytochrome P450 272 363 5.3E-9 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 80 91 1.5E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 274 285 1.5E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 346 357 1.5E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00359 B-class P450 signature 337 346 1.5E-7 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PANTHER PTHR24286 39 363 2.0E-21 T 19-04-2016 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 339 348 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 337 346 2.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 274 285 2.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 235 252 2.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 PRINTS PR00385 P450 superfamily signature 346 357 2.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4011 0d3306a800baa62b1af5262e48b5bd99 393 SUPERFAMILY SSF48264 16 364 1.96E-45 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 SMART SM00382 210 392 2.5E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 7 491 2.7E-141 T 19-04-2016 IPR004482 Mg chelatase-related protein AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 392 7.7E-82 T 19-04-2016 IPR000523 Magnesium chelatase ChlI domain AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 403 498 1.8E-25 T 19-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 SUPERFAMILY SSF52540 190 496 1.15E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 4.5E-35 T 19-04-2016 AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 SUPERFAMILY SSF54211 4 168 2.47E-29 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 Gene3D G3DSA:3.30.230.10 5 168 4.7E-29 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 PANTHER PTHR32039:SF7 1 500 1.2E-193 T 19-04-2016 IPR004482 Mg chelatase-related protein AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 Gene3D G3DSA:3.40.50.300 189 386 9.8E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1968 f87793813cd3b8deb2a3201c5c0bc4e7 503 PANTHER PTHR32039 1 500 1.2E-193 T 19-04-2016 AMED_2580 9af1430e0873c90f33d24b0bb729f3c0 384 PANTHER PTHR30213:SF2 5 318 1.1E-82 T 19-04-2016 AMED_2580 9af1430e0873c90f33d24b0bb729f3c0 384 Pfam PF03631 Virulence factor BrkB 31 290 4.0E-39 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_2580 9af1430e0873c90f33d24b0bb729f3c0 384 PANTHER PTHR30213 5 318 1.1E-82 T 19-04-2016 AMED_3104 d074a37c7513ecbdcb8c558e1f702139 440 Pfam PF00144 Beta-lactamase 17 320 3.6E-44 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3104 d074a37c7513ecbdcb8c558e1f702139 440 SUPERFAMILY SSF56601 14 331 1.88E-58 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3104 d074a37c7513ecbdcb8c558e1f702139 440 Gene3D G3DSA:3.40.710.10 25 331 4.8E-58 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3104 d074a37c7513ecbdcb8c558e1f702139 440 PANTHER PTHR22935 15 347 7.6E-40 T 19-04-2016 AMED_8954 4dbb0a45868f113f87fd5b5a313c8911 141 SUPERFAMILY SSF54427 1 116 6.51E-28 T 19-04-2016 IPR032710 NTF2-like domain AMED_8954 4dbb0a45868f113f87fd5b5a313c8911 141 Pfam PF07858 Limonene-1,2-epoxide hydrolase catalytic domain 1 115 8.6E-33 T 19-04-2016 IPR013100 Limonene-1,2-epoxide hydrolase AMED_8954 4dbb0a45868f113f87fd5b5a313c8911 141 Gene3D G3DSA:3.10.450.50 1 114 7.9E-37 T 19-04-2016 IPR032710 NTF2-like domain AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 Pfam PF01161 Phosphatidylethanolamine-binding protein 42 174 5.1E-36 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 Gene3D G3DSA:3.30.530.20 177 302 1.1E-11 T 19-04-2016 IPR023393 START-like domain AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 PANTHER PTHR30289:SF0 1 267 1.5E-80 T 19-04-2016 AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 182 328 2.5E-7 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 42 170 1.2E-35 T 19-04-2016 IPR005247 YbhB/YbcL AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 SUPERFAMILY SSF55961 179 330 3.17E-20 T 19-04-2016 AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 PANTHER PTHR30289 1 267 1.5E-80 T 19-04-2016 AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 Gene3D G3DSA:3.90.280.10 15 174 3.2E-51 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_3501 cc961d950ae52f2bdf599599ae4d4a50 334 SUPERFAMILY SSF49777 16 174 4.06E-49 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_4901 9d63ea6f03e1fc7a2d9975e36fda697c 112 PANTHER PTHR33154 1 37 6.2E-23 T 19-04-2016 AMED_4901 9d63ea6f03e1fc7a2d9975e36fda697c 112 PANTHER PTHR33154 53 108 6.2E-23 T 19-04-2016 AMED_4901 9d63ea6f03e1fc7a2d9975e36fda697c 112 SUPERFAMILY SSF46785 5 108 1.42E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4901 9d63ea6f03e1fc7a2d9975e36fda697c 112 Gene3D G3DSA:1.10.10.10 9 110 2.2E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4901 9d63ea6f03e1fc7a2d9975e36fda697c 112 Pfam PF12840 Helix-turn-helix domain 16 90 6.5E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4901 9d63ea6f03e1fc7a2d9975e36fda697c 112 SMART SM00418 16 110 1.1E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 86 2.0E-21 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 SUPERFAMILY SSF46992 3 86 8.5E-29 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.154 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 PANTHER PTHR33398 1 86 1.6E-33 T 19-04-2016 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 Pfam PF01649 Ribosomal protein S20 2 84 2.8E-28 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 Gene3D G3DSA:1.20.58.110 1 86 1.5E-30 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_6685 a1a4f2ce5808de21a7fa045e327a0133 86 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 2.9E-23 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7409 bd749c71cc301eedd0b75a0c5f7dd97b 438 SUPERFAMILY SSF51126 23 437 6.48E-65 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_7409 bd749c71cc301eedd0b75a0c5f7dd97b 438 Pfam PF13229 Right handed beta helix region 149 323 1.9E-8 T 19-04-2016 AMED_7409 bd749c71cc301eedd0b75a0c5f7dd97b 438 Gene3D G3DSA:2.160.20.10 21 438 1.1E-89 T 19-04-2016 IPR012334 Pectin lyase fold AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Gene3D G3DSA:3.40.47.10 12 131 4.6E-48 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Gene3D G3DSA:3.40.47.10 218 291 4.6E-48 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 PANTHER PTHR18919:SF5 7 429 1.7E-178 T 19-04-2016 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Pfam PF00108 Thiolase, N-terminal domain 12 278 9.2E-53 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 PANTHER PTHR18919 7 429 1.7E-178 T 19-04-2016 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 SUPERFAMILY SSF53901 12 286 7.27E-58 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Pfam PF02803 Thiolase, C-terminal domain 289 429 6.6E-32 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Gene3D G3DSA:3.40.47.10 297 428 4.2E-46 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 Gene3D G3DSA:3.40.47.10 172 217 4.2E-46 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 SUPERFAMILY SSF53901 301 428 1.8E-30 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 PIRSF PIRSF000429 6 429 2.1E-107 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_9234 4a6d46f74fe76fb7bb31a8c30f1d1e46 429 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 14 428 3.7E-122 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 Gene3D G3DSA:1.10.630.10 9 399 8.8E-79 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 PANTHER PTHR11712:SF234 9 399 2.5E-65 T 19-04-2016 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 290 317 3.0E-17 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 160 175 3.0E-17 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 143 159 3.0E-17 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 PRINTS PR00359 B-class P450 signature 194 216 3.0E-17 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 SUPERFAMILY SSF48264 11 399 2.49E-51 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1434 5039f167dec76dbf0d70bf841250621f 402 PANTHER PTHR11712 9 399 2.5E-65 T 19-04-2016 AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 Gene3D G3DSA:3.40.50.10320 4 278 5.6E-82 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 TIGRFAM TIGR03446 mycothiol_Mca: mycothiol conjugate amidase Mca 3 278 5.4E-115 T 19-04-2016 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 KEGG: 00311+3.5.1.11 AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 150 2.4E-27 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 PANTHER PTHR12993 4 236 1.1E-93 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 SUPERFAMILY SSF102588 3 270 1.44E-72 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 PANTHER PTHR12993:SF12 4 236 1.1E-93 T 19-04-2016 AMED_0141 63acfa0b44df60b8ea7682ee5adc1178 280 Hamap MF_01482 Mycothiol S-conjugate amidase [mca]. 3 279 61.56 T 19-04-2016 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 KEGG: 00311+3.5.1.11 AMED_0436 23e1021ab6accb225b54f0707c4513e6 232 SUPERFAMILY SSF161098 29 212 4.84E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0436 23e1021ab6accb225b54f0707c4513e6 232 PANTHER PTHR30177:SF4 25 224 5.7E-47 T 19-04-2016 AMED_0436 23e1021ab6accb225b54f0707c4513e6 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 49 214 2.8E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0436 23e1021ab6accb225b54f0707c4513e6 232 PANTHER PTHR30177 25 224 5.7E-47 T 19-04-2016 AMED_0436 23e1021ab6accb225b54f0707c4513e6 232 Gene3D G3DSA:1.10.3720.10 27 223 3.1E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4586 77d3181f423ec2d7a1c4f093d945ff73 160 PANTHER PTHR11079 8 142 3.1E-46 T 19-04-2016 AMED_4586 77d3181f423ec2d7a1c4f093d945ff73 160 SUPERFAMILY SSF53927 8 138 2.17E-42 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_4586 77d3181f423ec2d7a1c4f093d945ff73 160 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 105 4.6E-23 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMED_4586 77d3181f423ec2d7a1c4f093d945ff73 160 Gene3D G3DSA:3.40.140.10 5 140 5.6E-47 T 19-04-2016 AMED_4586 77d3181f423ec2d7a1c4f093d945ff73 160 PANTHER PTHR11079:SF25 8 142 3.1E-46 T 19-04-2016 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:3.90.980.10 120 246 5.5E-37 T 19-04-2016 IPR013264 DNA primase, catalytic core, N-terminal AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:3.40.1360.10 247 376 2.6E-39 T 19-04-2016 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 PANTHER PTHR30313 6 431 1.1E-132 T 19-04-2016 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 SMART SM00400 40 94 3.3E-34 T 19-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 PIRSF PIRSF002811 5 625 1.0E-146 T 19-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 SMART SM00493 265 343 9.8E-15 T 19-04-2016 IPR006171 Toprim domain AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Pfam PF13662 Toprim domain 266 336 5.1E-15 T 19-04-2016 IPR006171 Toprim domain AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:1.20.50.20 378 433 1.2E-8 T 19-04-2016 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 SUPERFAMILY SSF56731 120 435 1.23E-92 T 19-04-2016 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 SMART SM00766 485 614 2.9E-24 T 19-04-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 TIGRFAM TIGR01391 dnaG: DNA primase 8 426 1.0E-114 T 19-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Pfam PF08275 DNA primase catalytic core, N-terminal domain 130 257 2.8E-34 T 19-04-2016 IPR013264 DNA primase, catalytic core, N-terminal AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Pfam PF08278 DNA primase DnaG DnaB-binding 486 613 3.5E-26 T 19-04-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Pfam PF01807 CHC2 zinc finger 10 104 1.7E-33 T 19-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Pfam PF10410 DnaB-helicase binding domain of primase 379 431 1.1E-14 T 19-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Gene3D G3DSA:3.90.580.10 6 104 1.8E-36 T 19-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 Hamap MF_00974 DNA primase [dnaG]. 7 619 25.556 T 19-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMED_6587 3b3b3b07e581731571497aa8c1460474 637 SUPERFAMILY SSF57783 7 102 5.27E-32 T 19-04-2016 AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 Gene3D G3DSA:2.80.10.50 352 474 7.5E-39 T 19-04-2016 AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 26 340 2.3E-153 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 Gene3D G3DSA:2.60.120.200 24 341 1.2E-156 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 Pfam PF00652 Ricin-type beta-trefoil lectin domain 348 472 3.2E-28 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 SMART SM00458 348 475 1.2E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 SUPERFAMILY SSF50370 346 474 4.33E-36 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 PANTHER PTHR39447:SF2 1 341 3.5E-210 T 19-04-2016 AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 SUPERFAMILY SSF49899 25 341 1.03E-149 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3994 a34a73ce8552e087c24b45c4d6419931 475 PANTHER PTHR39447 1 341 3.5E-210 T 19-04-2016 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 PANTHER PTHR30055 5 133 2.6E-30 T 19-04-2016 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 PANTHER PTHR30055:SF36 5 133 2.6E-30 T 19-04-2016 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 SUPERFAMILY SSF46689 16 76 3.85E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 69 3.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 Gene3D G3DSA:1.10.357.10 73 217 1.2E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 Gene3D G3DSA:1.10.10.60 7 72 5.8E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 SUPERFAMILY SSF48498 83 220 1.67E-25 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5130 6cab668a5aa61c335c9ae8375fc463a1 229 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 79 181 3.1E-14 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 PANTHER PTHR19278:SF1 44 237 2.9E-54 T 19-04-2016 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 PANTHER PTHR19278:SF1 4 28 2.9E-54 T 19-04-2016 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 SMART SM00934 20 266 1.8E-31 T 19-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 Gene3D G3DSA:3.20.20.70 9 274 1.8E-55 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 94 107 - T 19-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 PANTHER PTHR19278 44 237 2.9E-54 T 19-04-2016 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 7 266 9.5E-79 T 19-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 20 265 5.6E-35 T 19-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 PANTHER PTHR19278 4 28 2.9E-54 T 19-04-2016 AMED_2753 d1367a9efc9a0b62706fae6ddcb35b10 282 SUPERFAMILY SSF51366 7 273 6.16E-58 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_4412 676cd497ade01bddde6e53af10af281f 255 SUPERFAMILY SSF55781 71 251 4.58E-34 T 19-04-2016 IPR029016 GAF domain-like AMED_4412 676cd497ade01bddde6e53af10af281f 255 SUPERFAMILY SSF46785 5 77 1.19E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4412 676cd497ade01bddde6e53af10af281f 255 SMART SM00346 5 95 2.6E-27 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_4412 676cd497ade01bddde6e53af10af281f 255 Pfam PF09339 IclR helix-turn-helix domain 7 57 7.7E-17 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_4412 676cd497ade01bddde6e53af10af281f 255 Pfam PF01614 Bacterial transcriptional regulator 126 248 3.1E-24 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_4412 676cd497ade01bddde6e53af10af281f 255 Gene3D G3DSA:3.30.450.40 76 252 5.2E-40 T 19-04-2016 IPR029016 GAF domain-like AMED_4412 676cd497ade01bddde6e53af10af281f 255 PANTHER PTHR30136 4 255 9.6E-65 T 19-04-2016 AMED_4412 676cd497ade01bddde6e53af10af281f 255 PANTHER PTHR30136:SF13 4 255 9.6E-65 T 19-04-2016 AMED_4412 676cd497ade01bddde6e53af10af281f 255 Gene3D G3DSA:1.10.10.10 4 75 7.8E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 SUPERFAMILY SSF63829 19 298 5.23E-63 T 19-04-2016 AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 PANTHER PTHR10907:SF47 13 296 1.7E-93 T 19-04-2016 AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 33 283 9.2E-56 T 19-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 PANTHER PTHR10907 13 296 1.7E-93 T 19-04-2016 AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 Gene3D G3DSA:2.120.10.30 26 298 5.3E-72 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 34 51 1.6E-6 T 19-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 186 1.6E-6 T 19-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) AMED_1802 c2a54f5f90b38d3ddf457087dbb86a8a 300 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 226 243 1.6E-6 T 19-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 Gene3D G3DSA:3.40.50.1820 29 306 1.2E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 PANTHER PTHR10992:SF778 29 307 7.0E-51 T 19-04-2016 AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 PRINTS PR00412 Epoxide hydrolase signature 119 132 1.6E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 PRINTS PR00412 Epoxide hydrolase signature 56 74 1.6E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 PRINTS PR00412 Epoxide hydrolase signature 282 304 1.6E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 SUPERFAMILY SSF53474 29 306 3.31E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 Pfam PF00561 alpha/beta hydrolase fold 50 168 2.7E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3549 1e9745472c7f6eb85fcba8ea3c6ff180 319 PANTHER PTHR10992 29 307 7.0E-51 T 19-04-2016 AMED_1324 4dfeaafedd1c14685452dcc9bed288c2 260 Gene3D G3DSA:3.60.15.10 3 254 3.1E-48 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1324 4dfeaafedd1c14685452dcc9bed288c2 260 SUPERFAMILY SSF56281 6 223 6.58E-27 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1324 4dfeaafedd1c14685452dcc9bed288c2 260 PANTHER PTHR15032 2 237 1.2E-48 T 19-04-2016 AMED_1324 4dfeaafedd1c14685452dcc9bed288c2 260 Pfam PF12706 Beta-lactamase superfamily domain 23 207 2.8E-29 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 SUPERFAMILY SSF55797 9 162 7.06E-36 T 19-04-2016 IPR014044 CAP domain AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PANTHER PTHR10334 10 162 3.2E-40 T 19-04-2016 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 SMART SM00198 12 153 8.3E-28 T 19-04-2016 IPR014044 CAP domain AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 ProSitePatterns PS01009 CRISP family signature 1. 110 120 - T 19-04-2016 IPR018244 Allergen V5/Tpx-1-related, conserved site GO:0005576 AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PRINTS PR00837 Allergen V5/Tpx-1 family signature 109 125 6.7E-7 T 19-04-2016 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PRINTS PR00837 Allergen V5/Tpx-1 family signature 140 153 6.7E-7 T 19-04-2016 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 PRINTS PR00837 Allergen V5/Tpx-1 family signature 84 97 6.7E-7 T 19-04-2016 IPR001283 Cysteine-rich secretory protein, allergen V5/Tpx-1-related AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 Gene3D G3DSA:3.40.33.10 9 162 2.0E-37 T 19-04-2016 IPR014044 CAP domain AMED_4672 de0b935bf2be7e5f294b1b5a70a4f0d1 164 Pfam PF00188 Cysteine-rich secretory protein family 19 135 1.1E-20 T 19-04-2016 IPR014044 CAP domain AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 PANTHER PTHR11373 26 174 6.6E-31 T 19-04-2016 AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 PANTHER PTHR11373:SF29 26 174 6.6E-31 T 19-04-2016 AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 27 506 2.4E-60 T 19-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 SMART SM00471 59 260 3.1E-12 T 19-04-2016 IPR003607 HD/PDEase domain AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 SUPERFAMILY SSF109604 27 176 2.96E-46 T 19-04-2016 AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 SUPERFAMILY SSF109604 228 272 2.96E-46 T 19-04-2016 AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 Pfam PF01966 HD domain 63 145 6.3E-12 T 19-04-2016 IPR006674 HD domain AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 Gene3D G3DSA:1.10.3410.10 247 308 1.0E-9 T 19-04-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain AMED_2858 b3e6344a6eb8a36a50319a45fac947e8 520 Gene3D G3DSA:1.10.3210.10 25 246 1.1E-48 T 19-04-2016 IPR006674 HD domain AMED_8777 4c6ec977442b4f84b4add6413c0bc5af 117 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 6.4E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8777 4c6ec977442b4f84b4add6413c0bc5af 117 SUPERFAMILY SSF46785 5 79 3.17E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8777 4c6ec977442b4f84b4add6413c0bc5af 117 Gene3D G3DSA:1.10.10.10 14 80 3.5E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8777 4c6ec977442b4f84b4add6413c0bc5af 117 SMART SM00345 16 75 1.2E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8777 4c6ec977442b4f84b4add6413c0bc5af 117 PANTHER PTHR11751 12 76 2.0E-12 T 19-04-2016 AMED_8777 4c6ec977442b4f84b4add6413c0bc5af 117 PANTHER PTHR11751:SF432 12 76 2.0E-12 T 19-04-2016 AMED_7357 585ec02c39aee37fc95233fcc6928bc7 177 PANTHER PTHR11776 5 155 1.2E-21 T 19-04-2016 AMED_7357 585ec02c39aee37fc95233fcc6928bc7 177 SUPERFAMILY SSF53271 19 156 4.12E-24 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_7357 585ec02c39aee37fc95233fcc6928bc7 177 Gene3D G3DSA:3.40.50.2020 12 176 5.9E-30 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_7357 585ec02c39aee37fc95233fcc6928bc7 177 Pfam PF00156 Phosphoribosyl transferase domain 40 158 4.0E-11 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 PANTHER PTHR10196:SF69 1 504 3.7E-269 T 19-04-2016 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 Hamap MF_00186 Glycerol kinase [glpK]. 2 500 55.453 T 19-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 135 147 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 SUPERFAMILY SSF53067 4 257 4.07E-88 T 19-04-2016 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 PIRSF PIRSF000538 2 504 4.4E-171 T 19-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 365 385 - T 19-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 Gene3D G3DSA:3.30.420.40 2 255 1.2E-103 T 19-04-2016 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 453 2.0E-64 T 19-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 SUPERFAMILY SSF53067 257 500 2.18E-85 T 19-04-2016 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 Gene3D G3DSA:3.30.420.40 257 501 1.4E-102 T 19-04-2016 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 499 1.0E-224 T 19-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 PANTHER PTHR10196 1 504 3.7E-269 T 19-04-2016 AMED_0925 58723dcb17e664a67664dc545445a0f7 504 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 254 8.5E-76 T 19-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMED_8564 d99560b205d4186e6b1ca847b0c0f9c6 316 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 17 181 4.0E-33 T 19-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMED_8564 d99560b205d4186e6b1ca847b0c0f9c6 316 Pfam PF01066 CDP-alcohol phosphatidyltransferase 12 75 1.4E-12 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_8564 d99560b205d4186e6b1ca847b0c0f9c6 316 PANTHER PTHR15362 11 140 5.1E-29 T 19-04-2016 AMED_8564 d99560b205d4186e6b1ca847b0c0f9c6 316 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 53 75 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_8564 d99560b205d4186e6b1ca847b0c0f9c6 316 PANTHER PTHR15362:SF2 11 140 5.1E-29 T 19-04-2016 AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 1.8E-5 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 185 1.8E-5 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 PANTHER PTHR11071:SF165 76 193 6.2E-20 T 19-04-2016 AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 Gene3D G3DSA:2.40.100.10 58 217 7.1E-27 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 SUPERFAMILY SSF50891 61 217 6.33E-28 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 216 2.3E-19 T 19-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AMED_2034 c6b688851b7bec4dd21e36304297b5f6 219 PANTHER PTHR11071 76 193 6.2E-20 T 19-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 PANTHER PTHR30328 1 195 2.3E-55 T 19-04-2016 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 PANTHER PTHR30328:SF19 1 195 2.3E-55 T 19-04-2016 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 Gene3D G3DSA:1.10.10.60 3 61 3.4E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 SUPERFAMILY SSF46689 10 77 9.75E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 Gene3D G3DSA:1.10.357.10 62 196 9.5E-47 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 8.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2906 8c4da8d56661d688202d4b3368ee6d86 197 SUPERFAMILY SSF48498 85 197 1.15E-23 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6090 b9c211a17171e886be314b90919f78be 234 SUPERFAMILY SSF46785 147 225 9.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6090 b9c211a17171e886be314b90919f78be 234 SMART SM00419 169 216 1.0E-5 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_6090 b9c211a17171e886be314b90919f78be 234 SMART SM00100 12 130 9.5E-25 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_6090 b9c211a17171e886be314b90919f78be 234 Pfam PF00027 Cyclic nucleotide-binding domain 30 116 1.2E-22 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_6090 b9c211a17171e886be314b90919f78be 234 PANTHER PTHR24567 12 224 5.4E-42 T 19-04-2016 AMED_6090 b9c211a17171e886be314b90919f78be 234 SUPERFAMILY SSF51206 12 138 1.83E-30 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_6090 b9c211a17171e886be314b90919f78be 234 Gene3D G3DSA:2.60.120.10 12 137 5.4E-28 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_6090 b9c211a17171e886be314b90919f78be 234 Gene3D G3DSA:1.10.10.10 147 227 1.0E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6090 b9c211a17171e886be314b90919f78be 234 Pfam PF13545 Crp-like helix-turn-helix domain 151 222 6.8E-13 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 SMART SM00829 10 333 3.5E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 Pfam PF13602 Zinc-binding dehydrogenase 181 333 3.8E-19 T 19-04-2016 AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 PANTHER PTHR11695 271 335 8.8E-76 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 PANTHER PTHR11695 17 246 8.8E-76 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 Gene3D G3DSA:3.90.180.10 11 144 1.9E-35 T 19-04-2016 IPR011032 GroES-like AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 Gene3D G3DSA:3.40.50.720 145 246 1.0E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 SUPERFAMILY SSF51735 111 260 4.06E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4418 ba6c48fb2f4873fc093644e3ec18c11d 335 SUPERFAMILY SSF50129 10 138 7.3E-30 T 19-04-2016 IPR011032 GroES-like AMED_0602 8386f1f42a173beaf940d3a7a08b880b 250 PANTHER PTHR30188 1 250 8.5E-81 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_0602 8386f1f42a173beaf940d3a7a08b880b 250 Pfam PF02405 Permease MlaE 29 240 7.1E-64 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_0602 8386f1f42a173beaf940d3a7a08b880b 250 PANTHER PTHR30188:SF4 1 250 8.5E-81 T 19-04-2016 AMED_7771 a549c4ef83e37860476486e21e4eaae8 190 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 184 3.0E-56 T 19-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_7771 a549c4ef83e37860476486e21e4eaae8 190 PANTHER PTHR12213 1 177 4.8E-72 T 19-04-2016 AMED_7771 a549c4ef83e37860476486e21e4eaae8 190 Gene3D G3DSA:1.20.1200.10 17 188 6.2E-60 T 19-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AMED_7771 a549c4ef83e37860476486e21e4eaae8 190 Pfam PF01923 Cobalamin adenosyltransferase 8 175 2.0E-57 T 19-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AMED_7771 a549c4ef83e37860476486e21e4eaae8 190 SUPERFAMILY SSF89028 7 185 6.87E-59 T 19-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AMED_7771 a549c4ef83e37860476486e21e4eaae8 190 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 179 4.0E-52 T 19-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_8529 1550d287c30d071c7c10a14b2e1c64b8 202 Pfam PF03029 Conserved hypothetical ATP binding protein 26 194 3.6E-27 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_8529 1550d287c30d071c7c10a14b2e1c64b8 202 PANTHER PTHR11711 23 191 1.2E-56 T 19-04-2016 AMED_8529 1550d287c30d071c7c10a14b2e1c64b8 202 PANTHER PTHR11711:SF117 23 191 1.2E-56 T 19-04-2016 AMED_8529 1550d287c30d071c7c10a14b2e1c64b8 202 Gene3D G3DSA:3.40.50.300 19 196 1.6E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8529 1550d287c30d071c7c10a14b2e1c64b8 202 SUPERFAMILY SSF52540 22 193 1.69E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 SUPERFAMILY SSF51445 89 372 3.17E-22 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 SMART SM00458 584 720 2.4E-7 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 Gene3D G3DSA:2.60.40.10 490 574 5.6E-8 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 Pfam PF01229 Glycosyl hydrolases family 39 191 254 9.3E-5 T 19-04-2016 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 Gene3D G3DSA:2.80.10.50 587 720 2.0E-22 T 19-04-2016 AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 Pfam PF05345 Putative Ig domain 523 562 7.0E-10 T 19-04-2016 IPR008009 Putative Ig AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 SUPERFAMILY SSF50370 581 719 3.33E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 SUPERFAMILY SSF49313 490 574 9.26E-10 T 19-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 619 707 5.2E-15 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3932 121afcc168b9f17a10f4390a1119b00f 722 Gene3D G3DSA:3.20.20.80 70 370 1.1E-29 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1947 d5a021bc39b2f08ef324c018add75327 434 SUPERFAMILY SSF55073 269 428 4.08E-45 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_1947 d5a021bc39b2f08ef324c018add75327 434 PANTHER PTHR10799 146 427 7.7E-33 T 19-04-2016 AMED_1947 d5a021bc39b2f08ef324c018add75327 434 Gene3D G3DSA:3.30.70.270 265 428 1.5E-49 T 19-04-2016 AMED_1947 d5a021bc39b2f08ef324c018add75327 434 SMART SM00267 252 430 1.3E-55 T 19-04-2016 IPR000160 GGDEF domain AMED_1947 d5a021bc39b2f08ef324c018add75327 434 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 426 6.4E-43 T 19-04-2016 IPR000160 GGDEF domain AMED_1947 d5a021bc39b2f08ef324c018add75327 434 PANTHER PTHR10799:SF750 146 427 7.7E-33 T 19-04-2016 AMED_1947 d5a021bc39b2f08ef324c018add75327 434 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 259 428 4.6E-49 T 19-04-2016 IPR000160 GGDEF domain AMED_1080 ff5307d269af729eb61991a52be09622 440 PANTHER PTHR30061 1 439 9.9E-41 T 19-04-2016 AMED_1080 ff5307d269af729eb61991a52be09622 440 Pfam PF01547 Bacterial extracellular solute-binding protein 67 337 1.6E-23 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_1080 ff5307d269af729eb61991a52be09622 440 Gene3D G3DSA:3.40.190.10 169 348 5.4E-44 T 19-04-2016 AMED_1080 ff5307d269af729eb61991a52be09622 440 Gene3D G3DSA:3.40.190.10 80 168 2.5E-8 T 19-04-2016 AMED_1080 ff5307d269af729eb61991a52be09622 440 SUPERFAMILY SSF53850 48 411 4.0E-59 T 19-04-2016 AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 SUPERFAMILY SSF53067 82 388 3.89E-54 T 19-04-2016 AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 Gene3D G3DSA:3.30.420.40 80 222 5.0E-38 T 19-04-2016 AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 ProSitePatterns PS01125 ROK family signature. 218 245 - T 19-04-2016 IPR000600 ROK family AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 Gene3D G3DSA:3.30.420.40 223 370 9.2E-46 T 19-04-2016 AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 PANTHER PTHR18964 60 394 1.4E-93 T 19-04-2016 AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 Pfam PF00480 ROK family 85 386 3.4E-49 T 19-04-2016 IPR000600 ROK family AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 PANTHER PTHR18964:SF108 60 394 1.4E-93 T 19-04-2016 AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 Gene3D G3DSA:1.10.10.10 10 79 2.4E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8376 3cfad2aa10ac3394051993a1925134c8 411 SUPERFAMILY SSF46785 11 74 7.44E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 Gene3D G3DSA:3.40.1390.30 115 216 2.5E-32 T 19-04-2016 AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 SUPERFAMILY SSF102705 4 266 1.15E-76 T 19-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 253 4.9E-47 T 19-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 PANTHER PTHR13799:SF13 4 267 3.3E-71 T 19-04-2016 AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 Gene3D G3DSA:3.40.1390.30 4 114 6.6E-44 T 19-04-2016 AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 248 4.8E-66 T 19-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMED_1172 8efce282adaeb9dcecc3727f5c537ae1 273 PANTHER PTHR13799 4 267 3.3E-71 T 19-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 SMART SM00344 5 111 1.2E-20 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 Gene3D G3DSA:3.30.70.920 58 142 7.5E-19 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 SUPERFAMILY SSF54909 65 149 3.62E-18 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 Gene3D G3DSA:1.10.10.10 2 54 1.2E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 3.66E-9 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 3.66E-9 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 3.66E-9 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 PANTHER PTHR30154 1 157 3.3E-47 T 19-04-2016 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 PANTHER PTHR30154:SF12 1 157 3.3E-47 T 19-04-2016 AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 SUPERFAMILY SSF46785 4 78 1.78E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 Pfam PF01037 Lrp/AsnC ligand binding domain 78 141 1.5E-14 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8094 8e00ffbd2f897c3354a2d683e06453e6 157 Pfam PF13404 AsnC-type helix-turn-helix domain 5 45 9.4E-8 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 PANTHER PTHR24320:SF45 3 281 3.1E-79 T 19-04-2016 AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 Gene3D G3DSA:3.40.50.720 3 195 9.2E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 Pfam PF00106 short chain dehydrogenase 3 136 4.9E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 3.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 3.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 PANTHER PTHR24320 3 281 3.1E-79 T 19-04-2016 AMED_5898 a1107f4daf934a2490549d16b70ec2b2 286 SUPERFAMILY SSF51735 2 199 9.85E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 PANTHER PTHR30620 5 448 7.6E-222 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:2.80.10.50 453 522 1.9E-7 T 19-04-2016 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 387 738 3.1E-58 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF03422 Carbohydrate binding module (family 6) 861 974 2.0E-20 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:3.40.50.1700 372 452 1.0E-60 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:3.40.50.1700 595 741 1.0E-60 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:3.20.20.300 32 357 5.1E-80 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF14310 Fibronectin type III-like domain 772 834 2.1E-14 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 87 347 9.7E-39 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SMART SM00606 853 975 4.0E-22 T 19-04-2016 IPR006584 Cellulose binding, type IV GO:0030246 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF52279 387 454 1.57E-46 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF52279 595 741 1.57E-46 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 PANTHER PTHR30620 579 849 7.6E-222 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 PRINTS PR00133 Glycosyl hydrolase family 3 signature 194 210 2.7E-7 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 PRINTS PR00133 Glycosyl hydrolase family 3 signature 105 124 2.7E-7 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF51445 31 385 1.16E-74 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 Gene3D G3DSA:2.60.120.260 853 974 5.6E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SMART SM01217 771 835 4.6E-17 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF49785 853 974 4.93E-22 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 PANTHER PTHR30620:SF8 5 448 7.6E-222 T 19-04-2016 AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 SUPERFAMILY SSF50405 453 526 6.76E-9 T 19-04-2016 IPR008999 Actin cross-linking AMED_4348 d5b65319406d6bc4629a5a00c08bc092 975 PANTHER PTHR30620:SF8 579 849 7.6E-222 T 19-04-2016 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 1.5E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 PANTHER PTHR30055 1 138 5.1E-21 T 19-04-2016 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 SUPERFAMILY SSF46689 3 79 5.99E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 Gene3D G3DSA:1.10.357.10 54 181 5.4E-11 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 PANTHER PTHR30055:SF75 1 138 5.1E-21 T 19-04-2016 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 Gene3D G3DSA:1.10.10.60 9 53 5.1E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 6.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1439 5e5b13d6d8f5053d78c2ce6865a0248a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 6.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1049 cf273aca52b0e2eec3bea422fd00c6d4 224 Gene3D G3DSA:3.40.1130.10 12 202 1.3E-24 T 19-04-2016 AMED_1049 cf273aca52b0e2eec3bea422fd00c6d4 224 SMART SM00563 34 153 1.9E-26 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_1049 cf273aca52b0e2eec3bea422fd00c6d4 224 PANTHER PTHR10434:SF21 1 215 5.2E-65 T 19-04-2016 AMED_1049 cf273aca52b0e2eec3bea422fd00c6d4 224 PANTHER PTHR10434 1 215 5.2E-65 T 19-04-2016 AMED_1049 cf273aca52b0e2eec3bea422fd00c6d4 224 Pfam PF01553 Acyltransferase 21 150 2.3E-20 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_1049 cf273aca52b0e2eec3bea422fd00c6d4 224 SUPERFAMILY SSF69593 8 218 9.81E-44 T 19-04-2016 AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 PANTHER PTHR10108 68 322 1.1E-95 T 19-04-2016 AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 PANTHER PTHR10108 339 409 1.1E-95 T 19-04-2016 AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 SUPERFAMILY SSF53335 145 407 4.26E-76 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 PIRSF PIRSF003085 7 421 4.2E-117 T 19-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 Pfam PF02353 Mycolic acid cyclopropane synthetase 134 402 1.0E-84 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 PANTHER PTHR10108:SF743 68 322 1.1E-95 T 19-04-2016 AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 PANTHER PTHR10108:SF743 339 409 1.1E-95 T 19-04-2016 AMED_2950 5dd78ba0f9d56ad0a63a060aaf21e00e 421 Gene3D G3DSA:3.40.50.150 134 404 1.9E-89 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7233 420b03367e4d1ad2b30169414c25d7bd 377 PANTHER PTHR24421 44 375 1.6E-53 T 19-04-2016 AMED_7233 420b03367e4d1ad2b30169414c25d7bd 377 PANTHER PTHR24421:SF26 44 375 1.6E-53 T 19-04-2016 AMED_7233 420b03367e4d1ad2b30169414c25d7bd 377 SUPERFAMILY SSF55874 258 365 1.09E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7233 420b03367e4d1ad2b30169414c25d7bd 377 Pfam PF07730 Histidine kinase 176 239 2.5E-13 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 SUPERFAMILY SSF48168 136 352 4.45E-58 T 19-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Gene3D G3DSA:3.20.70.20 850 894 2.6E-85 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Gene3D G3DSA:3.20.70.20 530 687 2.6E-85 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Gene3D G3DSA:3.20.70.20 744 789 2.6E-85 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Gene3D G3DSA:3.20.70.20 274 475 2.6E-85 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PANTHER PTHR11573 132 903 0.0 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 733 755 - T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 SUPERFAMILY SSF51998 353 793 1.4E-179 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 SUPERFAMILY SSF51998 824 894 1.4E-179 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Pfam PF03477 ATP cone domain 18 115 2.1E-18 T 19-04-2016 IPR005144 ATP-cone domain AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 277 350 5.1E-21 T 19-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 601 624 8.2E-46 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 564 575 8.2E-46 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 667 690 8.2E-46 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 429 448 8.2E-46 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 639 661 8.2E-46 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PRINTS PR01183 Ribonucleotide reductase large chain signature 744 771 8.2E-46 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 PANTHER PTHR11573:SF6 132 903 0.0 T 19-04-2016 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 Pfam PF02867 Ribonucleotide reductase, barrel domain 354 889 4.4E-181 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2879 5d370f4cfafb96e8db8c5a13efc62798 972 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 281 892 7.6E-212 T 19-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 SUPERFAMILY SSF56322 72 411 6.8E-95 T 19-04-2016 IPR005801 ADC synthase GO:0009058 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 Gene3D G3DSA:3.60.120.10 70 411 5.7E-104 T 19-04-2016 IPR005801 ADC synthase GO:0009058 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 76 407 3.5E-99 T 19-04-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 Pfam PF00425 chorismate binding enzyme 154 403 3.9E-75 T 19-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal AMED_8256 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 360 374 1.7E-10 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 345 359 1.7E-10 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 251 264 1.7E-10 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 PRINTS PR00095 Anthranilate synthase component I signature 265 278 1.7E-10 T 19-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 AMED_8256 c30115292711ccace3a9c4b77e48259d 421 PANTHER PTHR11236 63 412 7.4E-101 T 19-04-2016 AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 Gene3D G3DSA:3.30.420.40 219 369 1.2E-36 T 19-04-2016 AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 SUPERFAMILY SSF53067 84 385 3.94E-47 T 19-04-2016 AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 Pfam PF00480 ROK family 86 382 1.5E-42 T 19-04-2016 IPR000600 ROK family AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 Gene3D G3DSA:3.30.420.40 82 218 3.0E-24 T 19-04-2016 AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 PANTHER PTHR18964 61 387 1.1E-66 T 19-04-2016 AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 Gene3D G3DSA:1.10.10.10 11 80 7.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 PANTHER PTHR18964:SF108 61 387 1.1E-66 T 19-04-2016 AMED_8375 359d105b1faf46675e8d7bcb6e93fbad 395 SUPERFAMILY SSF46785 12 75 9.25E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2474 850599cad98fce0f49de413ef79870f5 1004 Gene3D G3DSA:1.10.10.10 927 998 4.5E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2474 850599cad98fce0f49de413ef79870f5 1004 Pfam PF13191 AAA ATPase domain 12 202 4.1E-26 T 19-04-2016 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 SUPERFAMILY SSF52540 129 277 9.46E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2474 850599cad98fce0f49de413ef79870f5 1004 SUPERFAMILY SSF52540 13 61 9.46E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2474 850599cad98fce0f49de413ef79870f5 1004 Gene3D G3DSA:3.40.50.300 13 97 7.3E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2474 850599cad98fce0f49de413ef79870f5 1004 Gene3D G3DSA:3.40.50.300 155 217 7.3E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2474 850599cad98fce0f49de413ef79870f5 1004 Pfam PF00196 Bacterial regulatory proteins, luxR family 937 993 1.1E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 PANTHER PTHR16305 856 959 1.4E-60 T 19-04-2016 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 PANTHER PTHR16305 2 462 1.4E-60 T 19-04-2016 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 SUPERFAMILY SSF46894 926 999 1.94E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 ProSitePatterns PS00622 LuxR-type HTH domain signature. 953 980 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 939 953 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 969 981 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 953 969 1.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 SMART SM00421 936 993 1.3E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 SUPERFAMILY SSF48452 450 648 6.72E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2474 850599cad98fce0f49de413ef79870f5 1004 Gene3D G3DSA:1.25.40.10 432 641 3.5E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 117 4.4E-39 T 19-04-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 Gene3D G3DSA:3.30.1130.10 1 119 6.9E-45 T 19-04-2016 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 PANTHER PTHR20941 1 119 6.2E-34 T 19-04-2016 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 TIGRFAM TIGR00526 folB_dom: FolB domain 2 118 1.7E-33 T 19-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 SUPERFAMILY SSF55620 1 119 2.28E-36 T 19-04-2016 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 Pfam PF02152 Dihydroneopterin aldolase 5 116 1.9E-34 T 19-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_8745 77f15280771f8f62816d5e7f2aa1c673 119 SMART SM00905 5 117 1.4E-51 T 19-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMED_3538 3928513a8b6941d20f3f9e94293b0940 715 Pfam PF13515 Fusaric acid resistance protein-like 395 520 1.6E-12 T 19-04-2016 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 SUPERFAMILY SSF51395 12 342 5.66E-91 T 19-04-2016 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 PANTHER PTHR11938 17 343 1.9E-82 T 19-04-2016 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 3 341 46.207 T 19-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 297 317 - T 19-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 83 102 - T 19-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 17 343 1.4E-109 T 19-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 Pfam PF01180 Dihydroorotate dehydrogenase 50 343 1.2E-84 T 19-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 Gene3D G3DSA:3.20.20.70 2 343 2.4E-115 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6277 adbbf1a5585337f81de713a22a07b0bf 345 PIRSF PIRSF000164 12 345 1.5E-94 T 19-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 346 433 3.6E-51 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 593 722 3.6E-51 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 PANTHER PTHR11908:SF71 2 524 1.5E-225 T 19-04-2016 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 PANTHER PTHR11908:SF71 553 723 1.5E-225 T 19-04-2016 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 167 270 1.1E-34 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 SUPERFAMILY SSF54665 2 121 1.57E-35 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 108 166 3.0E-12 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 272 343 3.0E-12 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.90.1170.50 2 107 8.2E-35 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 12 120 2.6E-24 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_3039 11ce5a7b6d708e795da61f594af30736 724 SUPERFAMILY SSF56003 112 723 3.27E-154 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Gene3D G3DSA:3.30.365.10 438 592 1.1E-24 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 PANTHER PTHR11908 2 524 1.5E-225 T 19-04-2016 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 PANTHER PTHR11908 553 723 1.5E-225 T 19-04-2016 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 665 3.5E-114 T 19-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMED_3039 11ce5a7b6d708e795da61f594af30736 724 SMART SM01008 12 120 1.5E-41 T 19-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMED_7456 0ba1e99e271a6f376631e40e35284cdb 293 SUPERFAMILY SSF52540 3 220 1.11E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7456 0ba1e99e271a6f376631e40e35284cdb 293 PANTHER PTHR24220 5 218 1.4E-67 T 19-04-2016 AMED_7456 0ba1e99e271a6f376631e40e35284cdb 293 Gene3D G3DSA:3.40.50.300 3 220 4.3E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7456 0ba1e99e271a6f376631e40e35284cdb 293 SMART SM00382 28 205 2.8E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7456 0ba1e99e271a6f376631e40e35284cdb 293 Pfam PF00005 ABC transporter 20 157 9.7E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1094 a2c1982b3a9a38ae18b638f9b33d1cf3 216 Gene3D G3DSA:3.60.21.10 19 198 8.6E-16 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1094 a2c1982b3a9a38ae18b638f9b33d1cf3 216 Pfam PF00149 Calcineurin-like phosphoesterase 18 189 1.2E-10 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_1094 a2c1982b3a9a38ae18b638f9b33d1cf3 216 SUPERFAMILY SSF56300 13 206 3.98E-30 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_0698 7e2184871ce0cdc9dbe8041657cfa80a 204 PANTHER PTHR30086:SF4 1 199 3.1E-49 T 19-04-2016 AMED_0698 7e2184871ce0cdc9dbe8041657cfa80a 204 Pfam PF01810 LysE type translocator 10 202 1.4E-27 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_0698 7e2184871ce0cdc9dbe8041657cfa80a 204 PANTHER PTHR30086 1 199 3.1E-49 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_0698 7e2184871ce0cdc9dbe8041657cfa80a 204 PIRSF PIRSF006324 1 204 1.5E-48 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_3976 d40e4f0cf8a78bb535acec0b65e5e2e6 332 PANTHER PTHR32196 1 324 5.1E-102 T 19-04-2016 AMED_3976 d40e4f0cf8a78bb535acec0b65e5e2e6 332 PANTHER PTHR32196:SF34 1 324 5.1E-102 T 19-04-2016 AMED_3976 d40e4f0cf8a78bb535acec0b65e5e2e6 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 319 1.5E-45 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PANTHER PTHR19370:SF113 1 228 8.3E-64 T 19-04-2016 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 Gene3D G3DSA:3.10.20.30 205 303 2.3E-27 T 19-04-2016 IPR012675 Beta-grasp domain AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 SUPERFAMILY SSF54292 201 304 8.52E-26 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 223 296 4.9E-10 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 Gene3D G3DSA:3.40.50.80 103 204 1.8E-22 T 19-04-2016 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 SUPERFAMILY SSF63380 3 96 1.43E-25 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 Gene3D G3DSA:2.40.30.10 2 97 1.3E-31 T 19-04-2016 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 254 262 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 132 141 3.1E-26 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 86 3.1E-26 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 107 126 3.1E-26 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 48 62 3.1E-26 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 27 37 3.1E-26 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PRINTS PR00409 Phthalate dioxygenase reductase family signature 182 190 3.1E-26 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 SUPERFAMILY SSF52343 94 211 3.01E-25 T 19-04-2016 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 PANTHER PTHR19370 1 228 8.3E-64 T 19-04-2016 AMED_4113 24e44c9613c3f9530d6f1ddc8f8095b6 305 Pfam PF00175 Oxidoreductase NAD-binding domain 108 152 9.5E-6 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_5339 31ce0f463124d68ce09a33b2c04a8559 256 PANTHER PTHR11941 3 251 2.5E-57 T 19-04-2016 AMED_5339 31ce0f463124d68ce09a33b2c04a8559 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_5339 31ce0f463124d68ce09a33b2c04a8559 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 254 1.0E-35 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_5339 31ce0f463124d68ce09a33b2c04a8559 256 SUPERFAMILY SSF52096 3 252 2.69E-60 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5339 31ce0f463124d68ce09a33b2c04a8559 256 Gene3D G3DSA:3.90.226.10 3 251 2.5E-57 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 PANTHER PTHR20852 32 459 1.3E-126 T 19-04-2016 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 Pfam PF16952 Glutamine synthetase N-terminal domain 27 111 8.9E-9 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 SUPERFAMILY SSF54368 27 125 1.7E-5 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 PANTHER PTHR20852:SF16 32 459 1.3E-126 T 19-04-2016 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 SUPERFAMILY SSF55931 126 450 2.75E-82 T 19-04-2016 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 Pfam PF00120 Glutamine synthetase, catalytic domain 127 444 8.4E-77 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 Gene3D G3DSA:3.30.590.10 130 444 1.1E-89 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMED_2300 8cc084b4aafdc59270faa002c2d460b2 460 SMART SM01230 126 376 3.4E-76 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_6263 c010578e795a4e4740d7c776d8c1f70e 243 Pfam PF14011 EspG family 5 236 2.8E-60 T 19-04-2016 IPR025734 EspG family AMED_1701 70681b3384c486731de91fb189082ff1 225 PANTHER PTHR33175:SF3 2 98 2.7E-37 T 19-04-2016 AMED_1701 70681b3384c486731de91fb189082ff1 225 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 6.5E-14 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 6.5E-14 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 6.5E-14 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 SMART SM00411 2 91 2.8E-33 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 Gene3D G3DSA:4.10.520.10 3 92 1.8E-27 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 19-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 PANTHER PTHR33175 2 98 2.7E-37 T 19-04-2016 AMED_1701 70681b3384c486731de91fb189082ff1 225 SUPERFAMILY SSF47729 3 94 2.36E-26 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMED_1701 70681b3384c486731de91fb189082ff1 225 Pfam PF00216 Bacterial DNA-binding protein 3 90 1.3E-25 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMED_8507 dbf2b86379e3ed60f596d9809fb5017f 124 PIRSF PIRSF028777 1 124 5.6E-53 T 19-04-2016 IPR031308 Uncharacterised conserved protein UCP028777 AMED_8507 dbf2b86379e3ed60f596d9809fb5017f 124 PANTHER PTHR31503 1 121 1.1E-40 T 19-04-2016 AMED_8507 dbf2b86379e3ed60f596d9809fb5017f 124 Pfam PF03733 Inner membrane component domain 68 118 5.9E-18 T 19-04-2016 IPR005185 Inner membrane component domain AMED_8507 dbf2b86379e3ed60f596d9809fb5017f 124 Pfam PF03733 Inner membrane component domain 4 54 5.7E-20 T 19-04-2016 IPR005185 Inner membrane component domain AMED_1081 93e1fe6b18277cb4013925ef1b2ca960 323 SUPERFAMILY SSF161098 37 311 4.45E-48 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1081 93e1fe6b18277cb4013925ef1b2ca960 323 PANTHER PTHR30193:SF28 14 321 2.9E-108 T 19-04-2016 AMED_1081 93e1fe6b18277cb4013925ef1b2ca960 323 Gene3D G3DSA:1.10.3720.10 34 307 1.8E-53 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1081 93e1fe6b18277cb4013925ef1b2ca960 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 310 4.8E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1081 93e1fe6b18277cb4013925ef1b2ca960 323 PANTHER PTHR30193 14 321 2.9E-108 T 19-04-2016 AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 SUPERFAMILY SSF52518 6 184 1.87E-64 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 PANTHER PTHR11624:SF79 5 330 1.9E-165 T 19-04-2016 AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 Gene3D G3DSA:3.40.50.970 5 183 3.9E-72 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 PANTHER PTHR11624 5 330 1.9E-165 T 19-04-2016 IPR033247 Transketolase family AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 SMART SM00861 7 182 6.3E-66 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 SUPERFAMILY SSF52922 202 327 2.88E-32 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 Pfam PF02780 Transketolase, C-terminal domain 202 320 1.1E-31 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 Gene3D G3DSA:3.40.50.920 203 324 2.3E-38 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_9217 f6114683b6d9eb2bc8a666402085b26e 330 Pfam PF02779 Transketolase, pyrimidine binding domain 6 181 7.7E-44 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_8932 96a5140e2fe8561adc647cf8f5b6f638 384 SUPERFAMILY SSF55874 268 367 1.77E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8932 96a5140e2fe8561adc647cf8f5b6f638 384 PANTHER PTHR24421 91 383 4.9E-62 T 19-04-2016 AMED_8932 96a5140e2fe8561adc647cf8f5b6f638 384 Pfam PF07730 Histidine kinase 188 252 9.4E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_8932 96a5140e2fe8561adc647cf8f5b6f638 384 PANTHER PTHR24421:SF26 91 383 4.9E-62 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 Gene3D G3DSA:3.40.50.980 101 284 4.5E-26 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 Pfam PF13193 AMP-binding enzyme C-terminal domain 547 623 2.7E-5 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 33 89 1.5E-11 T 19-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 PANTHER PTHR24095:SF46 8 245 5.1E-251 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 PANTHER PTHR24095:SF46 265 660 5.1E-251 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 Gene3D G3DSA:3.30.300.30 533 632 4.9E-14 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 PANTHER PTHR24095 8 245 5.1E-251 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 PANTHER PTHR24095 265 660 5.1E-251 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 Pfam PF00501 AMP-binding enzyme 94 534 3.9E-54 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 ProSitePatterns PS00455 Putative AMP-binding domain signature. 278 289 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 SUPERFAMILY SSF56801 30 636 3.01E-125 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 Gene3D G3DSA:3.40.50.980 285 433 2.4E-18 T 19-04-2016 AMED_3268 1d358d0f2665e009d531387f9c6176a6 664 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 8 659 7.9E-226 T 19-04-2016 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16 AMED_5896 7036b4e7adfc9f2a3d5384fc1439acf4 192 SUPERFAMILY SSF109854 9 157 1.3E-33 T 19-04-2016 AMED_5896 7036b4e7adfc9f2a3d5384fc1439acf4 192 Pfam PF04978 Protein of unknown function (DUF664) 10 158 4.4E-41 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_5896 7036b4e7adfc9f2a3d5384fc1439acf4 192 Gene3D G3DSA:1.20.120.450 14 159 2.2E-29 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_1884 c64eb1504508963dd28c1aff322afa32 309 Pfam PF00294 pfkB family carbohydrate kinase 6 301 8.0E-44 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_1884 c64eb1504508963dd28c1aff322afa32 309 PANTHER PTHR10584:SF194 3 309 1.4E-101 T 19-04-2016 AMED_1884 c64eb1504508963dd28c1aff322afa32 309 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 3 309 4.3E-105 T 19-04-2016 IPR030830 5-dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92|UniPathway: UPA00076 AMED_1884 c64eb1504508963dd28c1aff322afa32 309 PANTHER PTHR10584 3 309 1.4E-101 T 19-04-2016 AMED_1884 c64eb1504508963dd28c1aff322afa32 309 SUPERFAMILY SSF53613 4 309 4.13E-68 T 19-04-2016 IPR029056 Ribokinase-like AMED_1884 c64eb1504508963dd28c1aff322afa32 309 Gene3D G3DSA:3.40.1190.20 5 309 2.0E-82 T 19-04-2016 IPR029056 Ribokinase-like AMED_4147 adf312a8db0d4fb37bdcc97d00265eae 168 Gene3D G3DSA:1.20.120.450 3 168 1.0E-46 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_4147 adf312a8db0d4fb37bdcc97d00265eae 168 Pfam PF04978 Protein of unknown function (DUF664) 18 164 1.2E-45 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_4147 adf312a8db0d4fb37bdcc97d00265eae 168 SUPERFAMILY SSF109854 4 163 1.19E-41 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 Gene3D G3DSA:3.30.390.30 321 384 1.1E-14 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 Gene3D G3DSA:3.50.50.60 105 160 5.2E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PANTHER PTHR22912 1 384 5.7E-80 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 SUPERFAMILY SSF55424 313 384 3.16E-17 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PANTHER PTHR22912:SF180 1 384 5.7E-80 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 SUPERFAMILY SSF51905 4 311 1.67E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 302 9.2E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 Gene3D G3DSA:3.50.50.60 4 104 8.3E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 Gene3D G3DSA:3.50.50.60 161 315 9.1E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 2.5E-19 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.5E-19 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 2.5E-19 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.5E-19 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.5E-19 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 Pfam PF14759 Reductase C-terminal 321 382 2.4E-9 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 3.7E-16 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.7E-16 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.7E-16 T 19-04-2016 AMED_7213 a57646b8c25ffe4b2140f499540dca3b 391 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.7E-16 T 19-04-2016 AMED_4640 35c6881985312de67706095f1c763ddb 328 PANTHER PTHR23382 4 327 1.6E-183 T 19-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMED_4640 35c6881985312de67706095f1c763ddb 328 Gene3D G3DSA:3.40.50.720 4 154 8.7E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4640 35c6881985312de67706095f1c763ddb 328 PIRSF PIRSF000102 2 326 5.3E-59 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMED_4640 35c6881985312de67706095f1c763ddb 328 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 156 168 - T 19-04-2016 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: REACT_474 AMED_4640 35c6881985312de67706095f1c763ddb 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 147 5.6E-31 T 19-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMED_4640 35c6881985312de67706095f1c763ddb 328 SUPERFAMILY SSF56327 157 324 3.09E-58 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_4640 35c6881985312de67706095f1c763ddb 328 SUPERFAMILY SSF51735 3 156 1.02E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4640 35c6881985312de67706095f1c763ddb 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 4 322 1.2E-141 T 19-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMED_4640 35c6881985312de67706095f1c763ddb 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 157 323 1.7E-32 T 19-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMED_4640 35c6881985312de67706095f1c763ddb 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 326 55.913 T 19-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMED_4640 35c6881985312de67706095f1c763ddb 328 Gene3D G3DSA:3.90.110.10 156 325 2.4E-74 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_0316 c4a8c539c6727d95913b8a82d3b75f1a 320 SUPERFAMILY SSF53474 47 317 3.62E-70 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0316 c4a8c539c6727d95913b8a82d3b75f1a 320 PANTHER PTHR23024 45 320 1.1E-109 T 19-04-2016 AMED_0316 c4a8c539c6727d95913b8a82d3b75f1a 320 PANTHER PTHR23024:SF128 45 320 1.1E-109 T 19-04-2016 AMED_0316 c4a8c539c6727d95913b8a82d3b75f1a 320 Gene3D G3DSA:3.40.50.1820 10 318 1.4E-89 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0316 c4a8c539c6727d95913b8a82d3b75f1a 320 Pfam PF07859 alpha/beta hydrolase fold 84 292 3.8E-70 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_0068 9ca069de13e41748825892bf82de3656 310 PANTHER PTHR30465 1 309 1.3E-101 T 19-04-2016 AMED_0068 9ca069de13e41748825892bf82de3656 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 308 1.8E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0068 9ca069de13e41748825892bf82de3656 310 PANTHER PTHR30465:SF0 1 309 1.3E-101 T 19-04-2016 AMED_0068 9ca069de13e41748825892bf82de3656 310 Gene3D G3DSA:1.10.3720.10 85 305 6.2E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0068 9ca069de13e41748825892bf82de3656 310 SUPERFAMILY SSF161098 85 296 8.11E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0267 63410c105d8735bc30db7001c180f54b 497 PANTHER PTHR11920 242 449 3.6E-53 T 19-04-2016 AMED_0267 63410c105d8735bc30db7001c180f54b 497 PANTHER PTHR11920:SF257 242 449 3.6E-53 T 19-04-2016 AMED_0267 63410c105d8735bc30db7001c180f54b 497 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 317 489 4.5E-24 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_0267 63410c105d8735bc30db7001c180f54b 497 Pfam PF00672 HAMP domain 218 285 5.8E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_0267 63410c105d8735bc30db7001c180f54b 497 SUPERFAMILY SSF158472 237 286 1.57E-7 T 19-04-2016 AMED_0267 63410c105d8735bc30db7001c180f54b 497 SMART SM00304 237 289 3.0E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_0267 63410c105d8735bc30db7001c180f54b 497 SUPERFAMILY SSF55073 313 493 8.95E-44 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_0267 63410c105d8735bc30db7001c180f54b 497 SMART SM00044 285 474 4.4E-9 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_0267 63410c105d8735bc30db7001c180f54b 497 Gene3D G3DSA:3.30.70.1230 318 494 1.4E-33 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_4241 ef2e86a83180566525ebe20770c8542f 374 Pfam PF00082 Subtilase family 144 309 2.9E-5 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_4241 ef2e86a83180566525ebe20770c8542f 374 Gene3D G3DSA:3.40.50.200 53 370 4.9E-51 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_4241 ef2e86a83180566525ebe20770c8542f 374 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 297 307 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_4241 ef2e86a83180566525ebe20770c8542f 374 SUPERFAMILY SSF52743 51 370 1.44E-31 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_5028 643f1d3f3a2f2c49c995745f74f4864b 289 PANTHER PTHR40761:SF1 3 273 2.7E-43 T 19-04-2016 AMED_5028 643f1d3f3a2f2c49c995745f74f4864b 289 PANTHER PTHR40761 3 273 2.7E-43 T 19-04-2016 AMED_5028 643f1d3f3a2f2c49c995745f74f4864b 289 SUPERFAMILY SSF103481 53 120 5.62E-5 T 19-04-2016 AMED_2311 8c2acacafcfe1e740791360ae16f34dc 459 SUPERFAMILY SSF51569 14 458 3.52E-191 T 19-04-2016 AMED_2311 8c2acacafcfe1e740791360ae16f34dc 459 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 22 458 1.0E-211 T 19-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2311 8c2acacafcfe1e740791360ae16f34dc 459 Pfam PF01474 Class-II DAHP synthetase family 27 454 2.7E-187 T 19-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2311 8c2acacafcfe1e740791360ae16f34dc 459 PANTHER PTHR21337 29 458 1.5E-243 T 19-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_5741 9d8381c37dd32788f67db12e70d86614 331 Pfam PF03916 Polysulphide reductase, NrfD 50 204 2.3E-10 T 19-04-2016 IPR005614 NrfD family AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 Pfam PF03719 Ribosomal protein S5, C-terminal domain 123 194 1.8E-27 T 19-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 SUPERFAMILY SSF54768 48 113 2.93E-22 T 19-04-2016 AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 Gene3D G3DSA:3.30.230.10 114 195 1.7E-31 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 49 200 5.6E-67 T 19-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 ProSitePatterns PS00585 Ribosomal protein S5 signature. 65 97 - T 19-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 24 200 34.262 T 19-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 Gene3D G3DSA:3.30.160.20 50 109 2.4E-29 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 Pfam PF00333 Ribosomal protein S5, N-terminal domain 50 112 1.1E-27 T 19-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 SUPERFAMILY SSF54211 116 195 2.53E-24 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_0694 e1f2cecede1cb5decfd50cea0476a81a 215 PANTHER PTHR13718 50 201 4.6E-70 T 19-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 SUPERFAMILY SSF52540 116 500 1.62E-89 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 Gene3D G3DSA:3.40.50.300 234 502 6.8E-91 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 SUPERFAMILY SSF160246 9 85 6.8E-12 T 19-04-2016 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 322 336 - T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 PANTHER PTHR30258:SF2 36 500 3.3E-168 T 19-04-2016 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 10 86 1.9E-10 T 19-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 PANTHER PTHR30258 36 500 3.3E-168 T 19-04-2016 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 Pfam PF00437 Type II/IV secretion system protein 129 394 6.5E-76 T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMED_4451 55be955724c8aa064e4d6c37efcee82b 509 Gene3D G3DSA:3.30.450.90 104 227 1.8E-45 T 19-04-2016 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 Pfam PF04199 Putative cyclase 97 276 3.9E-13 T 19-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 PANTHER PTHR34861 4 78 2.1E-48 T 19-04-2016 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 PANTHER PTHR34861 97 350 2.1E-48 T 19-04-2016 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 SUPERFAMILY SSF102198 169 349 3.92E-11 T 19-04-2016 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 SUPERFAMILY SSF102198 97 128 3.92E-11 T 19-04-2016 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 Gene3D G3DSA:3.50.30.50 175 350 6.6E-29 T 19-04-2016 AMED_7126 e6cc3356eb47e0c745c750544a96389a 350 Gene3D G3DSA:3.50.30.50 96 133 6.6E-29 T 19-04-2016 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 SMART SM00448 2 115 4.5E-18 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 SUPERFAMILY SSF52172 2 128 3.84E-25 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 SUPERFAMILY SSF46894 132 201 1.09E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 PANTHER PTHR26402:SF137 2 201 1.9E-74 T 19-04-2016 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 Gene3D G3DSA:1.10.10.10 145 201 1.6E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 195 1.5E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 PANTHER PTHR26402 2 201 1.9E-74 T 19-04-2016 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 Pfam PF00072 Response regulator receiver domain 4 115 7.4E-19 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 Gene3D G3DSA:3.40.50.2300 2 144 2.5E-29 T 19-04-2016 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 SMART SM00421 138 195 2.7E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 8.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 8.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6883 a7f8a9d9750333dce112147fbd18519a 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 8.1E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 Gene3D G3DSA:3.10.180.10 12 128 4.2E-34 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 Gene3D G3DSA:3.10.180.10 141 257 3.2E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 PANTHER PTHR33993:SF3 11 259 1.7E-79 T 19-04-2016 AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 SUPERFAMILY SSF54593 143 253 2.2E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 121 1.3E-5 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 PANTHER PTHR33993 11 259 1.7E-79 T 19-04-2016 AMED_0924 d5b3583b795be6af8b5528d432064c1a 267 SUPERFAMILY SSF54593 13 128 2.42E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 SUPERFAMILY SSF82866 116 330 3.27E-34 T 19-04-2016 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 PANTHER PTHR33406:SF5 3 677 2.4E-158 T 19-04-2016 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 SUPERFAMILY SSF82866 446 667 2.22E-27 T 19-04-2016 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 Gene3D G3DSA:1.20.1640.10 159 331 7.7E-30 T 19-04-2016 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 Gene3D G3DSA:1.20.1640.10 465 673 2.7E-30 T 19-04-2016 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 Pfam PF03176 MMPL family 459 669 1.6E-33 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 Pfam PF03176 MMPL family 55 359 8.4E-58 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_7891 d08d1ebdf86896f126dc6998ec716995 683 PANTHER PTHR33406 3 677 2.4E-158 T 19-04-2016 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 Gene3D G3DSA:1.10.357.10 62 195 8.0E-42 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 SUPERFAMILY SSF48498 84 195 1.16E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1560 a0d91e4ab45488207ec2b72154307367 197 Gene3D G3DSA:1.10.10.60 3 61 3.1E-22 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 PANTHER PTHR30055:SF57 2 182 1.1E-50 T 19-04-2016 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 PANTHER PTHR30055 2 182 1.1E-50 T 19-04-2016 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 4.5E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.4E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.4E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1560 a0d91e4ab45488207ec2b72154307367 197 SUPERFAMILY SSF46689 4 74 2.59E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 221 9.2E-56 T 19-04-2016 AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 SUPERFAMILY SSF51735 1 223 1.14E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PANTHER PTHR24322 3 161 1.9E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 Gene3D G3DSA:3.40.50.720 1 224 5.9E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 60 71 1.5E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 168 1.5E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 204 1.5E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 105 121 1.5E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 149 1.5E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 149 7.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 119 7.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5089 e8f1685a64565a82f9b9852dabbd4894 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 60 71 7.8E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8537 21e2180c11e552b482dae698c4500070 528 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 518 1.1E-29 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_8537 21e2180c11e552b482dae698c4500070 528 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 408 427 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_8537 21e2180c11e552b482dae698c4500070 528 Gene3D G3DSA:3.40.50.1220 183 336 8.1E-37 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8537 21e2180c11e552b482dae698c4500070 528 PANTHER PTHR18968 5 521 1.7E-187 T 19-04-2016 AMED_8537 21e2180c11e552b482dae698c4500070 528 Gene3D G3DSA:3.40.50.970 341 522 8.9E-49 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_8537 21e2180c11e552b482dae698c4500070 528 PANTHER PTHR18968:SF133 5 521 1.7E-187 T 19-04-2016 AMED_8537 21e2180c11e552b482dae698c4500070 528 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 3.3E-40 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_8537 21e2180c11e552b482dae698c4500070 528 SUPERFAMILY SSF52467 182 338 8.88E-47 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8537 21e2180c11e552b482dae698c4500070 528 Gene3D G3DSA:3.40.50.970 4 178 5.7E-41 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_8537 21e2180c11e552b482dae698c4500070 528 SUPERFAMILY SSF52518 5 177 1.77E-36 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_8537 21e2180c11e552b482dae698c4500070 528 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 190 275 3.8E-14 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_8537 21e2180c11e552b482dae698c4500070 528 SUPERFAMILY SSF52518 350 521 3.93E-46 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 Pfam PF00775 Dioxygenase 410 565 5.7E-43 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 SUPERFAMILY SSF49482 328 566 1.57E-79 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 PANTHER PTHR33711 306 565 6.9E-96 T 19-04-2016 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 Gene3D G3DSA:1.20.1090.10 157 268 1.0E-29 T 19-04-2016 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 SUPERFAMILY SSF56796 9 306 5.36E-70 T 19-04-2016 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 PANTHER PTHR33711:SF4 306 565 6.9E-96 T 19-04-2016 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 Gene3D G3DSA:2.60.130.10 318 566 1.1E-84 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 Pfam PF04444 Catechol dioxygenase N terminus 332 401 2.0E-23 T 19-04-2016 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 307 1.9E-60 T 19-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 AMED_5990 0a38e5d4d8496ef176c9212a1ca855fa 581 Gene3D G3DSA:3.40.50.1970 8 152 9.8E-25 T 19-04-2016 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 Gene3D G3DSA:1.10.260.40 5 73 5.7E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 PANTHER PTHR10245 1 106 7.8E-12 T 19-04-2016 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 SUPERFAMILY SSF47413 3 67 4.22E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 Gene3D G3DSA:1.25.40.10 134 410 4.3E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 SUPERFAMILY SSF48452 197 375 2.85E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 Pfam PF13560 Helix-turn-helix domain 5 62 3.3E-12 T 19-04-2016 AMED_1038 da9c81c5e69d75c5356dd468413a05d3 421 SMART SM00530 8 62 1.0E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4060 297c8f8f9714a7cd10039ca557988a02 278 Gene3D G3DSA:1.10.10.10 37 87 6.0E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4060 297c8f8f9714a7cd10039ca557988a02 278 PANTHER PTHR30319 11 268 2.8E-33 T 19-04-2016 AMED_4060 297c8f8f9714a7cd10039ca557988a02 278 PIRSF PIRSF020623 3 278 1.1E-53 T 19-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 AMED_4060 297c8f8f9714a7cd10039ca557988a02 278 Pfam PF08223 PaaX-like protein C-terminal domain 101 256 1.6E-30 T 19-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 AMED_4060 297c8f8f9714a7cd10039ca557988a02 278 Pfam PF07848 PaaX-like protein 12 80 1.8E-12 T 19-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 AMED_4060 297c8f8f9714a7cd10039ca557988a02 278 PANTHER PTHR30319:SF1 11 268 2.8E-33 T 19-04-2016 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 PANTHER PTHR26402:SF564 3 215 2.1E-92 T 19-04-2016 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 Pfam PF00072 Response regulator receiver domain 5 116 4.5E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 SMART SM00421 151 208 1.9E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 SUPERFAMILY SSF46894 144 215 1.09E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 3.4E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 Gene3D G3DSA:3.40.50.2300 3 124 1.8E-35 T 19-04-2016 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.6E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.6E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.6E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 Gene3D G3DSA:1.10.10.10 125 215 1.2E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8225 294c72a4a615a82c27e9572aafe96903 218 PANTHER PTHR26402 3 215 2.1E-92 T 19-04-2016 AMED_8225 294c72a4a615a82c27e9572aafe96903 218 SUPERFAMILY SSF52172 3 136 1.12E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8225 294c72a4a615a82c27e9572aafe96903 218 SMART SM00448 3 116 5.3E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 Gene3D G3DSA:3.40.50.970 2 163 3.4E-27 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 PANTHER PTHR11624 1 306 5.4E-25 T 19-04-2016 IPR033247 Transketolase family AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 SUPERFAMILY SSF52922 174 294 4.06E-11 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 PANTHER PTHR11624:SF2 1 306 5.4E-25 T 19-04-2016 AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 Gene3D G3DSA:3.40.50.920 175 253 7.6E-6 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 Pfam PF02779 Transketolase, pyrimidine binding domain 3 161 6.6E-22 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 SMART SM00861 1 166 8.7E-20 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMED_2263 c31bbc2776a338ce249ebec7f02b97bc 309 SUPERFAMILY SSF52518 1 160 4.07E-34 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6682 d1daf9a062531879f52f747e75847153 206 Gene3D G3DSA:3.40.50.150 42 191 1.4E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6682 d1daf9a062531879f52f747e75847153 206 Pfam PF08241 Methyltransferase domain 65 156 2.7E-16 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_6682 d1daf9a062531879f52f747e75847153 206 PANTHER PTHR10108 35 191 4.7E-18 T 19-04-2016 AMED_6682 d1daf9a062531879f52f747e75847153 206 SUPERFAMILY SSF53335 36 196 1.79E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 42 62 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 228 247 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 4.4E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PANTHER PTHR11958:SF59 6 422 2.4E-125 T 19-04-2016 AMED_0937 64b7d1250ea432e913e37759df979de5 439 PANTHER PTHR11958 6 422 2.4E-125 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 Pfam PF00375 Sodium:dicarboxylate symporter family 4 405 1.4E-93 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 Gene3D G3DSA:1.10.3860.10 5 410 2.2E-92 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_0937 64b7d1250ea432e913e37759df979de5 439 SUPERFAMILY SSF118215 4 407 6.02E-87 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 Pfam PF00403 Heavy-metal-associated domain 5 65 2.0E-15 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 Gene3D G3DSA:3.30.70.100 3 66 8.1E-20 T 19-04-2016 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 SUPERFAMILY SSF55008 1 66 1.44E-17 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 15 28 3.1E-7 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 3 15 3.1E-7 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 53 66 3.1E-7 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6528 000b4566663e73d705bb824e6befa1d0 68 PRINTS PR00944 Copper ion binding protein signature 28 41 3.1E-7 T 19-04-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 Gene3D G3DSA:1.10.10.10 792 853 1.2E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 Gene3D G3DSA:3.40.50.300 33 152 2.4E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 Pfam PF00196 Bacterial regulatory proteins, luxR family 793 847 1.5E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 SUPERFAMILY SSF48452 436 753 5.38E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 808 824 2.3E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 794 808 2.3E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 824 836 2.3E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 SMART SM00421 791 848 5.9E-21 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 SUPERFAMILY SSF46894 789 853 6.46E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 SUPERFAMILY SSF52540 31 217 1.01E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6468 a7a9fdd7a09fde8c361418330588665e 854 Gene3D G3DSA:1.25.40.10 433 754 1.4E-36 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7942 83377e666d0b790ce671b7060047d422 278 SUPERFAMILY SSF158472 189 239 2.35E-5 T 19-04-2016 AMED_7942 83377e666d0b790ce671b7060047d422 278 PANTHER PTHR24423 183 243 5.9E-12 T 19-04-2016 AMED_7942 83377e666d0b790ce671b7060047d422 278 SMART SM00304 189 242 8.6E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7942 83377e666d0b790ce671b7060047d422 278 PANTHER PTHR24423:SF399 183 243 5.9E-12 T 19-04-2016 AMED_7942 83377e666d0b790ce671b7060047d422 278 Pfam PF00672 HAMP domain 171 238 3.7E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_9122 c92adb166f3cac04e6fe459935561309 233 PANTHER PTHR30353:SF0 27 223 4.8E-79 T 19-04-2016 AMED_9122 c92adb166f3cac04e6fe459935561309 233 Pfam PF09335 SNARE associated Golgi protein 49 176 8.2E-24 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_9122 c92adb166f3cac04e6fe459935561309 233 PANTHER PTHR30353 27 223 4.8E-79 T 19-04-2016 IPR032818 DedA family AMED_6887 b2ebb033d9763752ff8c44d945012640 385 PANTHER PTHR24421 164 374 2.5E-38 T 19-04-2016 AMED_6887 b2ebb033d9763752ff8c44d945012640 385 Pfam PF07730 Histidine kinase 185 249 3.8E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6887 b2ebb033d9763752ff8c44d945012640 385 PANTHER PTHR24421:SF10 164 374 2.5E-38 T 19-04-2016 AMED_6887 b2ebb033d9763752ff8c44d945012640 385 SUPERFAMILY SSF55874 259 374 5.19E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1273 4929e8c30815b41ed1a2b2da6922680e 375 Pfam PF01384 Phosphate transporter family 165 319 5.1E-46 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_1273 4929e8c30815b41ed1a2b2da6922680e 375 Pfam PF01384 Phosphate transporter family 21 164 1.9E-35 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_1273 4929e8c30815b41ed1a2b2da6922680e 375 PANTHER PTHR11101:SF54 3 356 1.5E-165 T 19-04-2016 AMED_1273 4929e8c30815b41ed1a2b2da6922680e 375 PANTHER PTHR11101 3 356 1.5E-165 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 Gene3D G3DSA:3.40.605.10 7 264 4.5E-80 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 PANTHER PTHR11699:SF212 8 477 2.9E-186 T 19-04-2016 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 Gene3D G3DSA:3.40.309.10 265 450 3.1E-65 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 Pfam PF00171 Aldehyde dehydrogenase family 14 475 8.9E-151 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 SUPERFAMILY SSF53720 5 477 1.13E-152 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_6848 98b75e6d2e50fbf3cd0caa3487fb2496 481 PANTHER PTHR11699 8 477 2.9E-186 T 19-04-2016 AMED_8229 de4f53460a727345dac80599d6ae969b 117 Pfam PF00857 Isochorismatase family 12 111 7.1E-27 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_8229 de4f53460a727345dac80599d6ae969b 117 PANTHER PTHR11080 23 117 6.0E-24 T 19-04-2016 AMED_8229 de4f53460a727345dac80599d6ae969b 117 SUPERFAMILY SSF52499 21 116 1.19E-30 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_8229 de4f53460a727345dac80599d6ae969b 117 Gene3D G3DSA:3.40.50.850 21 116 5.4E-31 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_8229 de4f53460a727345dac80599d6ae969b 117 PANTHER PTHR11080:SF37 23 117 6.0E-24 T 19-04-2016 AMED_1778 95639ed51c6da512b71bba8b19227eae 334 PANTHER PTHR33371:SF4 1 317 4.5E-88 T 19-04-2016 AMED_1778 95639ed51c6da512b71bba8b19227eae 334 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 293 6.2E-64 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1778 95639ed51c6da512b71bba8b19227eae 334 Pfam PF02470 MlaD protein 37 113 8.5E-17 T 19-04-2016 IPR003399 Mce/MlaD AMED_1778 95639ed51c6da512b71bba8b19227eae 334 PANTHER PTHR33371 1 317 4.5E-88 T 19-04-2016 AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 PANTHER PTHR24322:SF211 48 150 2.4E-41 T 19-04-2016 AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 PANTHER PTHR24322:SF211 11 30 2.4E-41 T 19-04-2016 AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 PANTHER PTHR24322:SF211 170 202 2.4E-41 T 19-04-2016 AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 PANTHER PTHR24322 48 150 2.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 PANTHER PTHR24322 11 30 2.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 PANTHER PTHR24322 170 202 2.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 Pfam PF00106 short chain dehydrogenase 7 207 4.8E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 SUPERFAMILY SSF51735 4 259 6.89E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8888 7a1566ac3f5c0462f94a98679c368dfd 300 Gene3D G3DSA:3.40.50.720 3 260 4.6E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 Gene3D G3DSA:3.90.1260.10 176 371 5.4E-62 T 19-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 SUPERFAMILY SSF52402 5 185 7.15E-32 T 19-04-2016 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 472 78.827 T 19-04-2016 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 Gene3D G3DSA:3.40.50.620 4 175 2.9E-40 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 PANTHER PTHR11587:SF2 1 426 1.0E-159 T 19-04-2016 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 19-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 Gene3D G3DSA:1.10.287.400 377 438 2.1E-29 T 19-04-2016 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 SUPERFAMILY SSF69864 190 437 7.19E-75 T 19-04-2016 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 420 6.9E-139 T 19-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 19-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 PANTHER PTHR11587 1 426 1.0E-159 T 19-04-2016 AMED_4417 331a2f76ff3a9c5c85102e7414516847 481 Pfam PF00764 Arginosuccinate synthase 16 394 1.3E-56 T 19-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 SMART SM00939 316 549 9.2E-66 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 PANTHER PTHR11731:SF151 222 288 4.4E-47 T 19-04-2016 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 PANTHER PTHR11731 3 167 4.4E-47 T 19-04-2016 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 PANTHER PTHR11731 222 288 4.4E-47 T 19-04-2016 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 Gene3D G3DSA:2.60.120.260 347 553 3.6E-67 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 PANTHER PTHR11731 308 338 4.4E-47 T 19-04-2016 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 13 554 2.8E-124 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 Gene3D G3DSA:3.40.50.1820 226 346 1.3E-76 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 Gene3D G3DSA:3.40.50.1820 3 147 1.3E-76 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 SUPERFAMILY SSF53474 2 353 6.99E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 PANTHER PTHR11731:SF151 308 338 4.4E-47 T 19-04-2016 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 SUPERFAMILY SSF49785 345 554 1.55E-53 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 PANTHER PTHR11731:SF151 3 167 4.4E-47 T 19-04-2016 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 334 548 2.0E-42 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_1464 e25d3175bcb4f63b90ce6e3c90833e2a 561 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 16 285 4.2E-54 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 Gene3D G3DSA:3.40.50.300 8 245 3.3E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 PANTHER PTHR24220:SF429 17 242 7.5E-92 T 19-04-2016 AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 Pfam PF00005 ABC transporter 32 174 1.6E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 SUPERFAMILY SSF52540 16 238 1.0E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 SMART SM00382 40 247 1.2E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6711 1066d483bd5b5d7a1c540c56ba3e63d1 318 PANTHER PTHR24220 17 242 7.5E-92 T 19-04-2016 AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 Pfam PF12840 Helix-turn-helix domain 23 79 9.0E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 9.9E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 24 39 9.9E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 9.9E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 SUPERFAMILY SSF46785 9 99 3.33E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 SMART SM00418 22 100 3.8E-18 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 Gene3D G3DSA:1.10.10.10 13 99 9.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 PANTHER PTHR33154:SF12 10 105 4.6E-32 T 19-04-2016 AMED_0822 bcf4eec24f0e89967c3be5994da61d96 107 PANTHER PTHR33154 10 105 4.6E-32 T 19-04-2016 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 PANTHER PTHR11751 108 126 3.1E-26 T 19-04-2016 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 PANTHER PTHR11751 20 88 3.1E-26 T 19-04-2016 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 8.0E-22 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 SUPERFAMILY SSF46785 15 85 1.73E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 Gene3D G3DSA:1.10.10.10 13 82 3.4E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 SUPERFAMILY SSF48008 109 238 1.2E-25 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 Gene3D G3DSA:1.20.120.530 108 239 4.0E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 2.4E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 2.4E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 SMART SM00345 22 81 9.8E-22 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 Pfam PF07729 FCD domain 110 232 1.3E-28 T 19-04-2016 IPR011711 GntR, C-terminal AMED_4788 ca6579eccdfbc6dbe4e766c708a68eab 248 SMART SM00895 110 233 3.4E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3290 044be6e82500da3846cea01b8fca9942 361 Gene3D G3DSA:3.40.50.1110 26 224 1.1E-34 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3290 044be6e82500da3846cea01b8fca9942 361 SUPERFAMILY SSF52266 23 223 2.11E-32 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3290 044be6e82500da3846cea01b8fca9942 361 SUPERFAMILY SSF50370 240 357 5.35E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3290 044be6e82500da3846cea01b8fca9942 361 Gene3D G3DSA:2.80.10.50 241 357 1.3E-32 T 19-04-2016 AMED_3290 044be6e82500da3846cea01b8fca9942 361 SMART SM00458 236 358 3.2E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3290 044be6e82500da3846cea01b8fca9942 361 PANTHER PTHR30383 33 226 2.1E-47 T 19-04-2016 AMED_3290 044be6e82500da3846cea01b8fca9942 361 PANTHER PTHR30383:SF9 33 226 2.1E-47 T 19-04-2016 AMED_3290 044be6e82500da3846cea01b8fca9942 361 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 37 213 3.2E-18 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3290 044be6e82500da3846cea01b8fca9942 361 Pfam PF00652 Ricin-type beta-trefoil lectin domain 240 355 1.2E-21 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3716 56cf83ef2e40cac33bce811e2fd92072 109 PANTHER PTHR33570:SF1 8 109 2.1E-36 T 19-04-2016 AMED_3716 56cf83ef2e40cac33bce811e2fd92072 109 Pfam PF02627 Carboxymuconolactone decarboxylase family 21 104 9.4E-24 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_3716 56cf83ef2e40cac33bce811e2fd92072 109 SUPERFAMILY SSF69118 12 107 2.22E-29 T 19-04-2016 IPR029032 AhpD-like AMED_3716 56cf83ef2e40cac33bce811e2fd92072 109 Gene3D G3DSA:1.20.1290.10 10 108 1.1E-24 T 19-04-2016 IPR029032 AhpD-like AMED_3716 56cf83ef2e40cac33bce811e2fd92072 109 PANTHER PTHR33570 8 109 2.1E-36 T 19-04-2016 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 PANTHER PTHR12725 1 208 5.1E-27 T 19-04-2016 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 120 133 4.6E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 195 208 4.6E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 4.6E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 168 188 4.6E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 166 4.6E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 Gene3D G3DSA:3.40.50.1000 1 221 4.9E-39 T 19-04-2016 IPR023214 HAD-like domain AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 90 202 7.4E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 102 206 1.5E-12 T 19-04-2016 IPR023214 HAD-like domain AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 123 194 5.1E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_8683 81ff63bfc82bed6c2bf633dcfc43c15f 228 SUPERFAMILY SSF56784 1 214 1.85E-33 T 19-04-2016 IPR023214 HAD-like domain AMED_8536 ea814062766460c351edc767eb55741e 286 PANTHER PTHR24220 6 211 9.9E-90 T 19-04-2016 AMED_8536 ea814062766460c351edc767eb55741e 286 SMART SM00382 33 215 1.3E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8536 ea814062766460c351edc767eb55741e 286 Pfam PF00005 ABC transporter 24 166 5.7E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8536 ea814062766460c351edc767eb55741e 286 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8536 ea814062766460c351edc767eb55741e 286 SUPERFAMILY SSF52540 4 231 1.01E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8536 ea814062766460c351edc767eb55741e 286 Gene3D G3DSA:3.40.50.300 3 213 1.0E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 PANTHER PTHR30346:SF2 1 316 2.5E-73 T 19-04-2016 AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 Gene3D G3DSA:3.40.190.10 182 270 6.2E-19 T 19-04-2016 AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 Gene3D G3DSA:1.10.10.10 2 86 1.5E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 PANTHER PTHR30346 1 316 2.5E-73 T 19-04-2016 AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 8.4E-18 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 SUPERFAMILY SSF46785 2 112 5.83E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 Pfam PF03466 LysR substrate binding domain 89 295 1.7E-40 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 Gene3D G3DSA:3.40.190.10 92 181 2.2E-13 T 19-04-2016 AMED_7430 55c6d3a6fd0442adbe32173399ecad8b 319 SUPERFAMILY SSF53850 91 295 1.63E-36 T 19-04-2016 AMED_3589 318a915c6e786c7547f8e549c21cb69a 250 SUPERFAMILY SSF52091 20 115 3.92E-7 T 19-04-2016 IPR002645 STAS domain AMED_3589 318a915c6e786c7547f8e549c21cb69a 250 SUPERFAMILY SSF55874 160 244 2.85E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3589 318a915c6e786c7547f8e549c21cb69a 250 Gene3D G3DSA:3.30.750.24 20 117 2.3E-6 T 19-04-2016 IPR002645 STAS domain AMED_0506 388637378bd21f9d325ae4495b1c30e7 299 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 21 293 4.8E-92 T 19-04-2016 AMED_0506 388637378bd21f9d325ae4495b1c30e7 299 PIRSF PIRSF005355 4 298 6.4E-83 T 19-04-2016 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 AMED_0506 388637378bd21f9d325ae4495b1c30e7 299 PANTHER PTHR13929 12 283 7.5E-62 T 19-04-2016 AMED_0506 388637378bd21f9d325ae4495b1c30e7 299 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 12 297 20.873 T 19-04-2016 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMED_0506 388637378bd21f9d325ae4495b1c30e7 299 Pfam PF01040 UbiA prenyltransferase family 29 259 2.9E-35 T 19-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 AMED_0506 388637378bd21f9d325ae4495b1c30e7 299 PANTHER PTHR13929:SF0 12 283 7.5E-62 T 19-04-2016 AMED_4093 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Gene3D G3DSA:2.60.420.10 460 526 3.1E-7 T 19-04-2016 AMED_4093 c6c4803268d50ebf24f7c858cc5ea6a5 1032 SUPERFAMILY SSF49785 563 685 1.08E-10 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4093 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 733 787 2.7E-5 T 19-04-2016 IPR018905 Alpha-galactosidase, NEW3 domain AMED_4093 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Gene3D G3DSA:2.60.120.260 564 693 3.7E-11 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4093 c6c4803268d50ebf24f7c858cc5ea6a5 1032 Pfam PF00754 F5/8 type C domain 565 685 7.5E-12 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4093 c6c4803268d50ebf24f7c858cc5ea6a5 1032 SUPERFAMILY SSF48208 70 525 5.95E-24 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1759 128b506b3112591a6f2a92d2256eb390 360 Pfam PF13808 DDE_Tnp_1-associated 1 80 2.6E-14 T 19-04-2016 IPR032806 H repeat-associated protein, N-terminal AMED_1759 128b506b3112591a6f2a92d2256eb390 360 Pfam PF01609 Transposase DDE domain 97 326 1.8E-18 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_1759 128b506b3112591a6f2a92d2256eb390 360 PANTHER PTHR30298 1 360 2.6E-31 T 19-04-2016 AMED_1664 3cf2f0d8eee2205b8c4e9a1fa88eec8b 133 Gene3D G3DSA:3.40.630.30 3 131 1.3E-24 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1664 3cf2f0d8eee2205b8c4e9a1fa88eec8b 133 SUPERFAMILY SSF55729 1 125 6.69E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1664 3cf2f0d8eee2205b8c4e9a1fa88eec8b 133 Pfam PF00583 Acetyltransferase (GNAT) family 45 123 1.2E-7 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7937 cb36857dc0d61b3f1572671ca0ad857f 305 PANTHER PTHR19325:SF359 137 304 2.0E-58 T 19-04-2016 AMED_7937 cb36857dc0d61b3f1572671ca0ad857f 305 PANTHER PTHR19325 137 304 2.0E-58 T 19-04-2016 AMED_7937 cb36857dc0d61b3f1572671ca0ad857f 305 SUPERFAMILY SSF55486 111 298 1.09E-27 T 19-04-2016 AMED_7937 cb36857dc0d61b3f1572671ca0ad857f 305 Gene3D G3DSA:3.40.390.10 178 289 6.4E-12 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_7937 cb36857dc0d61b3f1572671ca0ad857f 305 Pfam PF05572 Pregnancy-associated plasma protein-A 182 298 1.1E-17 T 19-04-2016 IPR008754 Peptidase M43, pregnancy-associated plasma-A Reactome: REACT_15380 AMED_4688 40af76ba56a7c37a27f58cbf63462b44 114 Pfam PF03795 YCII-related domain 19 97 1.3E-11 T 19-04-2016 IPR005545 YCII-related AMED_4688 40af76ba56a7c37a27f58cbf63462b44 114 PANTHER PTHR35174 3 113 1.5E-21 T 19-04-2016 AMED_4688 40af76ba56a7c37a27f58cbf63462b44 114 SUPERFAMILY SSF54909 4 113 1.34E-25 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4688 40af76ba56a7c37a27f58cbf63462b44 114 Gene3D G3DSA:3.30.70.1060 2 112 2.5E-34 T 19-04-2016 AMED_7635 49a406feb3b47a8761624b499b347cbd 194 SUPERFAMILY SSF51717 28 184 1.24E-11 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_7635 49a406feb3b47a8761624b499b347cbd 194 Gene3D G3DSA:3.20.20.70 26 85 3.6E-6 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 45 580 2.4E-127 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 65 90 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 431 449 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 491 508 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 282 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 407 425 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 467 482 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 157 176 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 139 157 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 296 315 5.4E-71 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PANTHER PTHR11686 8 598 1.6E-231 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 PANTHER PTHR11686:SF27 8 598 1.6E-231 T 19-04-2016 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 Pfam PF01019 Gamma-glutamyltranspeptidase 58 586 7.3E-153 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_2763 506ca7dbd841c7894f05efcb52545e62 598 SUPERFAMILY SSF56235 35 589 8.3E-154 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0173 00d2a275e4f23a79f2b83b234c1d8546 112 Pfam PF11225 Protein of unknown function (DUF3024) 58 111 2.4E-16 T 19-04-2016 IPR021388 Bacteriophage 933W, L0084 AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 PANTHER PTHR22748 1 258 2.3E-104 T 19-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 19-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 SUPERFAMILY SSF56219 1 258 6.81E-67 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 257 4.5E-71 T 19-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 255 5.5E-58 T 19-04-2016 AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 249 1.7E-22 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 Gene3D G3DSA:3.60.10.10 1 257 1.4E-72 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_2776 1978eb8bb08d2b867e0eb568df03d2e8 258 PANTHER PTHR22748:SF7 1 258 2.3E-104 T 19-04-2016 AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 Pfam PF06144 DNA polymerase III, delta subunit 13 175 7.2E-10 T 19-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 SUPERFAMILY SSF52540 6 190 1.65E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 Gene3D G3DSA:3.40.50.300 9 125 1.0E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 9 319 2.7E-28 T 19-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 SUPERFAMILY SSF48019 203 321 1.38E-13 T 19-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 Gene3D G3DSA:1.10.8.60 136 220 1.8E-6 T 19-04-2016 AMED_6686 ede8242f040c377939aa6412ea8db2a0 326 PANTHER PTHR34388 7 326 4.8E-53 T 19-04-2016 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 349 1.5E-144 T 19-04-2016 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00930 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 SUPERFAMILY SSF63380 3 104 2.15E-22 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 1.4E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 137 146 1.4E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 113 132 1.4E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 149 160 1.4E-5 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 Gene3D G3DSA:3.40.50.80 94 233 2.0E-37 T 19-04-2016 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 SUPERFAMILY SSF52343 92 238 2.75E-34 T 19-04-2016 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00410 Phenol hydroxylase reductase family signature 113 132 1.2E-6 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00410 Phenol hydroxylase reductase family signature 208 216 1.2E-6 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PRINTS PR00410 Phenol hydroxylase reductase family signature 55 62 1.2E-6 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 Pfam PF00970 Oxidoreductase FAD-binding domain 7 102 1.1E-9 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 Gene3D G3DSA:3.10.20.30 234 348 3.7E-29 T 19-04-2016 IPR012675 Beta-grasp domain AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 SUPERFAMILY SSF54292 230 348 1.7E-24 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 297 305 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 Gene3D G3DSA:2.40.30.10 3 93 8.6E-22 T 19-04-2016 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PANTHER PTHR19370:SF106 5 260 2.7E-57 T 19-04-2016 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 Pfam PF00175 Oxidoreductase NAD-binding domain 114 222 3.8E-16 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 279 339 1.4E-12 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_1568 fc42641689c1c90bd4c450d4b0440e4f 350 PANTHER PTHR19370 5 260 2.7E-57 T 19-04-2016 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 PANTHER PTHR11177:SF203 67 298 1.4E-16 T 19-04-2016 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 SUPERFAMILY SSF51055 349 401 8.24E-14 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 SUPERFAMILY SSF51445 48 301 3.16E-17 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 Gene3D G3DSA:3.20.20.80 80 300 8.0E-13 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 PANTHER PTHR11177 67 298 1.4E-16 T 19-04-2016 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 Pfam PF02839 Carbohydrate binding domain 353 395 3.1E-9 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 SMART SM00495 353 398 1.7E-15 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_7070 10bc5f6a39e2bc0fcce8276b9646ba94 401 Gene3D G3DSA:2.10.10.20 351 397 7.6E-18 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_8571 953e4b0ca0464ee4fbad891728a64f18 536 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 74 497 4.3E-210 T 19-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMED_8571 953e4b0ca0464ee4fbad891728a64f18 536 Pfam PF01964 Radical SAM ThiC family 74 494 2.1E-201 T 19-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMED_8571 953e4b0ca0464ee4fbad891728a64f18 536 Pfam PF13667 ThiC-associated domain 8 71 7.0E-17 T 19-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMED_8571 953e4b0ca0464ee4fbad891728a64f18 536 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 73 500 55.752 T 19-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMED_8571 953e4b0ca0464ee4fbad891728a64f18 536 PANTHER PTHR30557 7 530 0.0 T 19-04-2016 AMED_8571 953e4b0ca0464ee4fbad891728a64f18 536 PANTHER PTHR30557:SF1 7 530 0.0 T 19-04-2016 AMED_7055 115703a787a9951a58702972b1cccbef 394 PIRSF PIRSF036428 13 394 6.1E-109 T 19-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 AMED_7055 115703a787a9951a58702972b1cccbef 394 SUPERFAMILY SSF53790 18 199 1.7E-29 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7055 115703a787a9951a58702972b1cccbef 394 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 20 196 1.1E-32 T 19-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 AMED_7055 115703a787a9951a58702972b1cccbef 394 Gene3D G3DSA:3.30.950.10 119 199 4.6E-16 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_7055 115703a787a9951a58702972b1cccbef 394 PANTHER PTHR14741:SF34 220 349 2.4E-39 T 19-04-2016 AMED_7055 115703a787a9951a58702972b1cccbef 394 Gene3D G3DSA:3.40.50.150 231 365 2.0E-16 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7055 115703a787a9951a58702972b1cccbef 394 PANTHER PTHR14741 220 349 2.4E-39 T 19-04-2016 AMED_7055 115703a787a9951a58702972b1cccbef 394 SUPERFAMILY SSF53335 219 385 3.22E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7055 115703a787a9951a58702972b1cccbef 394 Gene3D G3DSA:3.40.1010.10 16 118 2.0E-21 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_7055 115703a787a9951a58702972b1cccbef 394 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 17 192 7.2E-19 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7055 115703a787a9951a58702972b1cccbef 394 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 229 330 4.4E-27 T 19-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 AMED_0004 5358021253d261dc10c0c367e84a63dc 384 PANTHER PTHR32182 2 381 1.2E-53 T 19-04-2016 AMED_0004 5358021253d261dc10c0c367e84a63dc 384 ProSitePatterns PS00618 RecF protein signature 2. 327 345 - T 19-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMED_0004 5358021253d261dc10c0c367e84a63dc 384 Gene3D G3DSA:3.40.50.300 2 171 6.3E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0004 5358021253d261dc10c0c367e84a63dc 384 Gene3D G3DSA:3.40.50.300 260 358 6.3E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0004 5358021253d261dc10c0c367e84a63dc 384 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 360 1.1E-17 T 19-04-2016 IPR003395 RecF/RecN/SMC, N-terminal AMED_0004 5358021253d261dc10c0c367e84a63dc 384 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 384 94.159 T 19-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMED_0004 5358021253d261dc10c0c367e84a63dc 384 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 19-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMED_0004 5358021253d261dc10c0c367e84a63dc 384 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 2 370 1.7E-116 T 19-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMED_0004 5358021253d261dc10c0c367e84a63dc 384 SUPERFAMILY SSF52540 2 223 2.16E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0004 5358021253d261dc10c0c367e84a63dc 384 SUPERFAMILY SSF52540 263 381 2.16E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0004 5358021253d261dc10c0c367e84a63dc 384 SMART SM00382 22 380 0.0054 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0004 5358021253d261dc10c0c367e84a63dc 384 PANTHER PTHR32182:SF0 2 381 1.2E-53 T 19-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMED_1358 0b65bcb2d100e2cd6b11a567e4123c02 252 Gene3D G3DSA:3.40.50.1820 31 240 6.4E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1358 0b65bcb2d100e2cd6b11a567e4123c02 252 SUPERFAMILY SSF53474 176 234 8.59E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1358 0b65bcb2d100e2cd6b11a567e4123c02 252 SUPERFAMILY SSF53474 33 148 8.59E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1358 0b65bcb2d100e2cd6b11a567e4123c02 252 Pfam PF07819 PGAP1-like protein 79 143 1.2E-6 T 19-04-2016 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 6.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 6.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 6.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 6.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 6.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 186 0.0011 T 19-04-2016 AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PANTHER PTHR24321:SF6 4 244 9.6E-56 T 19-04-2016 AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 243 2.2E-56 T 19-04-2016 AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PANTHER PTHR24321 4 244 9.6E-56 T 19-04-2016 AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 Gene3D G3DSA:3.40.50.720 6 243 7.6E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 SUPERFAMILY SSF51735 6 245 2.15E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 2.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3088 e1e765baa8ae87d19e67c06dca283f80 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2690 30c5903ad6bc086c38dec5b744656171 110 SUPERFAMILY SSF54913 6 103 9.56E-35 T 19-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMED_2690 30c5903ad6bc086c38dec5b744656171 110 Gene3D G3DSA:3.30.70.120 6 108 8.2E-45 T 19-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMED_2690 30c5903ad6bc086c38dec5b744656171 110 PANTHER PTHR35983 1 110 3.6E-42 T 19-04-2016 AMED_2690 30c5903ad6bc086c38dec5b744656171 110 Pfam PF02641 Uncharacterized ACR, COG1993 7 102 5.5E-41 T 19-04-2016 IPR003793 Domain of unknown function DUF190 AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 SUPERFAMILY SSF51445 210 427 4.7E-43 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 Gene3D G3DSA:1.10.101.10 121 191 1.2E-19 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 Gene3D G3DSA:1.10.101.10 24 98 4.2E-20 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 Gene3D G3DSA:3.20.20.80 210 427 1.7E-51 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 SUPERFAMILY SSF47090 24 97 6.54E-15 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 PANTHER PTHR34135:SF2 210 422 3.7E-32 T 19-04-2016 AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 PANTHER PTHR34135 210 422 3.7E-32 T 19-04-2016 AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 SUPERFAMILY SSF47090 121 191 3.14E-15 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 SMART SM00641 211 320 2.2E-5 T 19-04-2016 IPR018077 Glycoside hydrolase, family 25 subgroup AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 Pfam PF01183 Glycosyl hydrolases family 25 215 405 3.0E-35 T 19-04-2016 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 Pfam PF01471 Putative peptidoglycan binding domain 131 190 4.5E-10 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3619 c1abaac1586f290daa2e0993d7d64fd5 428 Pfam PF01471 Putative peptidoglycan binding domain 34 93 6.0E-11 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 SUPERFAMILY SSF46894 721 783 4.08E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 757 769 1.0E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 741 757 1.0E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 727 741 1.0E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 Pfam PF00196 Bacterial regulatory proteins, luxR family 726 778 6.9E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 Gene3D G3DSA:1.10.10.10 726 783 7.1E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 Gene3D G3DSA:3.40.50.300 20 69 2.7E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1487 38f8f78a2b4cd18787362bad8f554d58 791 SMART SM00421 724 781 7.2E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0932 914afd841a86935d4f52dc73f02b10df 131 Pfam PF08044 Domain of unknown function (DUF1707) 4 56 4.8E-19 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PANTHER PTHR19139 1 256 1.0E-102 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 Gene3D G3DSA:1.20.1080.10 7 255 5.3E-82 T 19-04-2016 IPR023271 Aquaporin-like AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 ProSitePatterns PS00221 MIP family signature. 68 76 - T 19-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PANTHER PTHR19139:SF100 1 256 1.0E-102 T 19-04-2016 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 Pfam PF00230 Major intrinsic protein 11 247 3.8E-55 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 TIGRFAM TIGR00861 MIP: MIP family channel proteins 16 247 4.5E-66 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 181 203 1.4E-48 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 50 74 1.4E-48 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 87 106 1.4E-48 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 12 31 1.4E-48 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 148 166 1.4E-48 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 PRINTS PR00783 Major intrinsic protein family signature 230 250 1.4E-48 T 19-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 AMED_4413 d11f083b60de6a43b35c9c51b699cbd5 273 SUPERFAMILY SSF81338 12 253 1.02E-68 T 19-04-2016 IPR023271 Aquaporin-like AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 PANTHER PTHR34142:SF3 166 494 2.6E-68 T 19-04-2016 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 Gene3D G3DSA:3.20.20.80 166 494 1.7E-60 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 SUPERFAMILY SSF49384 32 133 6.28E-27 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 PANTHER PTHR34142 166 494 2.6E-68 T 19-04-2016 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 SMART SM00637 33 132 3.2E-35 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 Pfam PF00553 Cellulose binding domain 33 132 5.5E-26 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 314 323 - T 19-04-2016 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 Gene3D G3DSA:2.60.40.290 32 134 1.0E-32 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 SUPERFAMILY SSF51445 164 496 3.64E-52 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8139 bae5111503dc8cb4a14c998db082a1d0 499 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 198 465 3.4E-30 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 Pfam PF00561 alpha/beta hydrolase fold 12 124 7.9E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00412 Epoxide hydrolase signature 79 92 3.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00412 Epoxide hydrolase signature 17 35 3.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00412 Epoxide hydrolase signature 93 106 3.1E-5 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PANTHER PTHR10992 1 272 6.1E-52 T 19-04-2016 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 SUPERFAMILY SSF53474 2 273 9.84E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 Gene3D G3DSA:3.40.50.1820 2 272 3.3E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 2.0E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 79 92 2.0E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 35 50 2.0E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6398 7b9e15b8925c35dbe390b71fae2890b0 276 PANTHER PTHR10992:SF842 1 272 6.1E-52 T 19-04-2016 AMED_0060 4ceb6c3e9d15d9359bd99c609d407e66 124 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 31 121 4.0E-31 T 19-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 AMED_0060 4ceb6c3e9d15d9359bd99c609d407e66 124 PANTHER PTHR10516 19 123 3.8E-43 T 19-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type AMED_0060 4ceb6c3e9d15d9359bd99c609d407e66 124 Gene3D G3DSA:3.10.50.40 4 123 1.9E-41 T 19-04-2016 AMED_0060 4ceb6c3e9d15d9359bd99c609d407e66 124 SUPERFAMILY SSF54534 16 123 1.53E-38 T 19-04-2016 AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PANTHER PTHR24322 152 183 5.7E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PANTHER PTHR24322 11 136 5.7E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PANTHER PTHR24322:SF397 152 183 5.7E-49 T 19-04-2016 AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PANTHER PTHR24322:SF397 11 136 5.7E-49 T 19-04-2016 AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 Gene3D G3DSA:3.40.50.720 6 242 2.0E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 Pfam PF00106 short chain dehydrogenase 8 189 8.1E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 SUPERFAMILY SSF51735 1 240 1.5E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.7E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.7E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.7E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.7E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4864 519ebd6ca63f48d20e44ae6ea20f7197 279 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 174 0.0056 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 Gene3D G3DSA:3.40.190.10 133 274 3.1E-24 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 PANTHER PTHR30006:SF3 27 343 1.8E-86 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 Gene3D G3DSA:3.40.190.10 275 338 3.4E-27 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 Gene3D G3DSA:3.40.190.10 4 127 3.4E-27 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 PANTHER PTHR30006 27 343 1.8E-86 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 30 339 2.6E-69 T 19-04-2016 IPR005948 Thiamine ABC transporter periplasmic binding protein GO:0005215|GO:0006810|GO:0015888|GO:0030288|GO:0030975 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 Pfam PF13343 Bacterial extracellular solute-binding protein 79 306 1.1E-27 T 19-04-2016 AMED_8042 805e351a0bb805d714ef2d42d64e2e57 344 SUPERFAMILY SSF53850 31 340 1.28E-53 T 19-04-2016 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 SUPERFAMILY SSF75005 750 1036 3.53E-71 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 PANTHER PTHR22925 75 341 3.0E-154 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 PANTHER PTHR22925 787 1037 3.0E-154 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.60.120.200 487 661 1.2E-24 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 PANTHER PTHR22925:SF35 75 341 3.0E-154 T 19-04-2016 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 PANTHER PTHR22925:SF35 787 1037 3.0E-154 T 19-04-2016 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 495 659 5.0E-17 T 19-04-2016 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.115.10.20 748 1022 1.8E-75 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 Pfam PF04616 Glycosyl hydrolases family 43 750 1022 5.8E-65 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 Pfam PF04616 Glycosyl hydrolases family 43 179 390 1.4E-6 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 Gene3D G3DSA:2.115.10.20 178 417 7.5E-25 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 SUPERFAMILY SSF75005 179 432 7.85E-27 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3343 bb24754c1d109e8e7410665b3afc0462 1047 SUPERFAMILY SSF49899 450 662 2.11E-26 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_7660 7290896e3e3a4f47dbf6b1a2f54475b2 409 Pfam PF02720 Domain of unknown function (DUF222) 20 322 6.5E-39 T 19-04-2016 IPR003870 Domain of unknown function DUF222 AMED_7660 7290896e3e3a4f47dbf6b1a2f54475b2 409 SMART SM00507 313 365 1.6E-11 T 19-04-2016 IPR003615 HNH nuclease AMED_7660 7290896e3e3a4f47dbf6b1a2f54475b2 409 Pfam PF01844 HNH endonuclease 330 369 5.5E-6 T 19-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AMED_4532 efc38457babfd719698b5449b4694845 221 Pfam PF07510 Protein of unknown function (DUF1524) 117 215 2.7E-7 T 19-04-2016 IPR011089 Domain of unknown function DUF1524 AMED_4532 efc38457babfd719698b5449b4694845 221 PANTHER PTHR24094 48 221 1.8E-68 T 19-04-2016 AMED_4532 efc38457babfd719698b5449b4694845 221 PANTHER PTHR24094:SF14 48 221 1.8E-68 T 19-04-2016 AMED_2288 c6b53dcca0ff4476a06ff638d8b1f229 357 Pfam PF12158 Protein of unknown function (DUF3592) 122 239 3.8E-7 T 19-04-2016 IPR021994 Protein of unknown function DUF3592 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Gene3D G3DSA:3.30.450.40 214 376 1.6E-17 T 19-04-2016 IPR029016 GAF domain-like AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF13185 GAF domain 64 203 3.3E-18 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF13185 GAF domain 232 373 1.1E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 SMART SM00065 233 382 7.7E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 SMART SM00065 65 212 2.5E-19 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 SUPERFAMILY SSF55781 214 400 1.09E-19 T 19-04-2016 IPR029016 GAF domain-like AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 SUPERFAMILY SSF55781 47 230 2.62E-37 T 19-04-2016 IPR029016 GAF domain-like AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 PANTHER PTHR11347:SF114 408 446 1.6E-44 T 19-04-2016 IPR027035 Hypoxia/Redox sensor histidine kinase response regulator DosT/DevS GO:0004673|GO:0046777|GO:0070483 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 PANTHER PTHR11347:SF114 18 383 1.6E-44 T 19-04-2016 IPR027035 Hypoxia/Redox sensor histidine kinase response regulator DosT/DevS GO:0004673|GO:0046777|GO:0070483 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Gene3D G3DSA:3.30.450.40 55 210 7.6E-31 T 19-04-2016 IPR029016 GAF domain-like AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 552 1.6E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 SUPERFAMILY SSF55874 492 581 4.98E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Pfam PF07730 Histidine kinase 390 450 4.2E-10 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 Gene3D G3DSA:3.30.565.10 481 545 2.8E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 PANTHER PTHR11347 408 446 1.6E-44 T 19-04-2016 AMED_5471 abc405f1fca1d4e98fc45c72f6f3381f 583 PANTHER PTHR11347 18 383 1.6E-44 T 19-04-2016 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 121 134 5.9E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 5.9E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 5.9E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 SUPERFAMILY SSF53474 16 307 2.32E-69 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PANTHER PTHR10992:SF778 7 307 7.7E-56 T 19-04-2016 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PANTHER PTHR10992 7 307 7.7E-56 T 19-04-2016 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 Gene3D G3DSA:3.40.50.1820 6 306 3.7E-73 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 107 120 1.8E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 63 78 1.8E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 282 304 1.8E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 43 61 1.8E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 PRINTS PR00412 Epoxide hydrolase signature 248 264 1.8E-21 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_8824 6829cf64c1af8037567ddad9b1f51640 308 Pfam PF00561 alpha/beta hydrolase fold 37 292 6.1E-28 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 Gene3D G3DSA:3.40.50.300 350 592 5.9E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 SUPERFAMILY SSF90123 24 317 8.24E-22 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 Gene3D G3DSA:1.20.1560.10 31 330 2.2E-16 T 19-04-2016 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 PANTHER PTHR24221 144 604 5.8E-103 T 19-04-2016 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 Pfam PF00664 ABC transporter transmembrane region 37 302 3.0E-5 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 Pfam PF00005 ABC transporter 367 528 2.4E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 SUPERFAMILY SSF52540 342 599 6.21E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8145 39d32fa984ed7a046f08c2f492914a7c 607 SMART SM00382 376 575 4.0E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8434 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 Pfam PF01263 Aldose 1-epimerase 8 295 1.8E-38 T 19-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMED_8434 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 Gene3D G3DSA:2.70.98.10 4 300 6.2E-37 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_8434 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 PANTHER PTHR10091 9 208 5.4E-17 T 19-04-2016 AMED_8434 5cd17d5dd80b0b230db6d5fbcd5ac8cc 301 SUPERFAMILY SSF74650 6 299 1.95E-53 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_5887 01d3b348134a06b98f27dd55d0f82364 127 SUPERFAMILY SSF52091 21 125 1.96E-17 T 19-04-2016 IPR002645 STAS domain AMED_5887 01d3b348134a06b98f27dd55d0f82364 127 PANTHER PTHR33495:SF2 4 125 1.6E-20 T 19-04-2016 AMED_5887 01d3b348134a06b98f27dd55d0f82364 127 Pfam PF13466 STAS domain 32 110 8.7E-11 T 19-04-2016 IPR002645 STAS domain AMED_5887 01d3b348134a06b98f27dd55d0f82364 127 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 19 121 1.3E-16 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_5887 01d3b348134a06b98f27dd55d0f82364 127 Gene3D G3DSA:3.30.750.24 21 125 3.2E-21 T 19-04-2016 IPR002645 STAS domain AMED_5887 01d3b348134a06b98f27dd55d0f82364 127 PANTHER PTHR33495 4 125 1.6E-20 T 19-04-2016 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 SUPERFAMILY SSF52172 1 135 5.41E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 PANTHER PTHR26402:SF564 3 211 5.5E-85 T 19-04-2016 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 1.8E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 Gene3D G3DSA:1.10.10.10 124 215 7.7E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 PANTHER PTHR26402 3 211 5.5E-85 T 19-04-2016 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 Pfam PF00072 Response regulator receiver domain 5 118 3.9E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 SUPERFAMILY SSF46894 148 213 2.01E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.5E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.5E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.5E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 SMART SM00421 152 209 2.4E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 Gene3D G3DSA:3.40.50.2300 2 123 3.0E-34 T 19-04-2016 AMED_6196 a9420ff4eaf0430c028ed66b22d6613d 226 SMART SM00448 3 118 1.3E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 PANTHER PTHR36451:SF1 3 381 2.6E-80 T 19-04-2016 AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 PANTHER PTHR36451 3 381 2.6E-80 T 19-04-2016 AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 Gene3D G3DSA:3.40.50.300 159 341 6.2E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 Gene3D G3DSA:3.40.50.300 88 107 6.2E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 SUPERFAMILY SSF52540 200 362 5.94E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 SUPERFAMILY SSF52540 58 132 5.94E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2850 fba1705e69c8dfdc91c924cb04ee4406 389 Pfam PF13469 Sulfotransferase family 89 336 1.6E-57 T 19-04-2016 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF16995 Transmembrane region of lysyl-tRNA synthetase 19 243 3.6E-29 T 19-04-2016 IPR031553 Lysyl-tRNA synthetase, N-terminal transmembrane region KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PANTHER PTHR22594:SF4 602 1106 2.6E-209 T 19-04-2016 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 SUPERFAMILY SSF55681 761 1104 7.28E-99 T 19-04-2016 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF00152 tRNA synthetases class II (D, K and N) 762 1102 6.3E-70 T 19-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Gene3D G3DSA:3.30.930.10 757 1101 1.3E-99 T 19-04-2016 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 624 1106 36.077 T 19-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF01336 OB-fold nucleic acid binding domain 670 744 5.2E-12 T 19-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 620 1106 3.0E-150 T 19-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 261 560 3.0E-102 T 19-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 798 808 3.6E-30 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 843 856 3.6E-30 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 989 1005 3.6E-30 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 861 878 3.6E-30 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PRINTS PR00982 Lysyl-tRNA synthetase signature 814 830 3.6E-30 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 PANTHER PTHR22594 602 1106 2.6E-209 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 SUPERFAMILY SSF50249 618 754 1.22E-34 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1210 66b5ecb9db1cbe0f231ce6510a5eef0c 1107 Gene3D G3DSA:2.40.50.140 619 753 1.1E-39 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2515 38445a046b69e05a7534ab411a76d227 150 PANTHER PTHR22749:SF0 7 122 1.7E-34 T 19-04-2016 AMED_2515 38445a046b69e05a7534ab411a76d227 150 SMART SM00904 1 127 7.0E-33 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMED_2515 38445a046b69e05a7534ab411a76d227 150 Gene3D G3DSA:2.40.30.30 2 132 1.0E-34 T 19-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 AMED_2515 38445a046b69e05a7534ab411a76d227 150 Pfam PF01687 Riboflavin kinase 3 125 7.5E-29 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMED_2515 38445a046b69e05a7534ab411a76d227 150 SUPERFAMILY SSF82114 3 131 6.1E-34 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMED_2515 38445a046b69e05a7534ab411a76d227 150 PANTHER PTHR22749 7 122 1.7E-34 T 19-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 Pfam PF00553 Cellulose binding domain 34 132 1.6E-24 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF54556 439 498 1.03E-13 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_0277 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:3.10.50.10 441 499 8.9E-24 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_0277 ee6112c20d07a086e448c65737ee8489 542 SMART SM00637 33 132 6.1E-36 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:2.60.40.290 32 133 1.1E-31 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF51445 497 541 1.1E-83 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0277 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF51445 167 437 1.1E-83 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0277 ee6112c20d07a086e448c65737ee8489 542 Pfam PF00704 Glycosyl hydrolases family 18 175 527 3.7E-71 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 PANTHER PTHR11177 174 228 8.9E-81 T 19-04-2016 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 PANTHER PTHR11177 251 541 8.9E-81 T 19-04-2016 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 SUPERFAMILY SSF49384 29 133 6.35E-27 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 SMART SM00636 173 527 1.0E-108 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:3.20.20.80 504 541 2.3E-87 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 Gene3D G3DSA:3.20.20.80 160 440 2.3E-87 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0277 ee6112c20d07a086e448c65737ee8489 542 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 97 110 - T 19-04-2016 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 TIGRFAM TIGR01907 casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI 2 212 1.8E-26 T 19-04-2016 IPR010179 CRISPR-associated protein Cse3 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 SUPERFAMILY SSF117987 1 79 1.6E-19 T 19-04-2016 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 Pfam PF08798 CRISPR associated protein 2 212 1.8E-57 T 19-04-2016 IPR010179 CRISPR-associated protein Cse3 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 Gene3D G3DSA:3.30.70.1210 95 212 2.7E-31 T 19-04-2016 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 Gene3D G3DSA:3.30.70.1200 1 85 5.4E-27 T 19-04-2016 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 SMART SM01101 1 212 4.9E-61 T 19-04-2016 IPR010179 CRISPR-associated protein Cse3 AMED_5808 a80a37cfa916861d39b1efc0389474f0 216 SUPERFAMILY SSF117987 95 212 2.12E-29 T 19-04-2016 AMED_5692 ba3145e563b0303f3da5c121cdc3cd5b 194 Pfam PF00857 Isochorismatase family 12 166 2.3E-14 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_5692 ba3145e563b0303f3da5c121cdc3cd5b 194 SUPERFAMILY SSF52499 3 187 1.44E-34 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_5692 ba3145e563b0303f3da5c121cdc3cd5b 194 Gene3D G3DSA:3.40.50.850 5 188 2.0E-28 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_5692 ba3145e563b0303f3da5c121cdc3cd5b 194 PANTHER PTHR14119:SF11 4 193 4.0E-51 T 19-04-2016 AMED_5692 ba3145e563b0303f3da5c121cdc3cd5b 194 PANTHER PTHR14119 4 193 4.0E-51 T 19-04-2016 AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 SMART SM00382 39 225 3.5E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 SUPERFAMILY SSF52540 11 229 2.32E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 PANTHER PTHR24220 12 248 2.4E-107 T 19-04-2016 AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 PANTHER PTHR24220:SF484 12 248 2.4E-107 T 19-04-2016 AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 Gene3D G3DSA:3.40.50.300 10 229 9.7E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4027 b43aaa5139005e7afdd9e09ef7b78a57 264 Pfam PF00005 ABC transporter 30 176 1.2E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1678 eada3437e77d9b6663e8f1822d5faca4 240 Gene3D G3DSA:2.60.120.10 21 93 3.8E-8 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1678 eada3437e77d9b6663e8f1822d5faca4 240 SUPERFAMILY SSF51182 8 114 1.52E-10 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5554 92b264349831ced7a7a7f8453aa50adc 314 SUPERFAMILY SSF48179 257 306 8.16E-10 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_5554 92b264349831ced7a7a7f8453aa50adc 314 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 259 303 8.2E-9 T 19-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_5554 92b264349831ced7a7a7f8453aa50adc 314 Gene3D G3DSA:1.10.1040.10 260 306 1.6E-9 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_1861 399ce8c2b55e8b05624b1f046682875e 184 Pfam PF00775 Dioxygenase 37 174 4.4E-16 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_1861 399ce8c2b55e8b05624b1f046682875e 184 PANTHER PTHR33711 4 182 7.6E-50 T 19-04-2016 AMED_1861 399ce8c2b55e8b05624b1f046682875e 184 SUPERFAMILY SSF49482 2 183 1.15E-48 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_1861 399ce8c2b55e8b05624b1f046682875e 184 Gene3D G3DSA:2.60.130.10 3 182 6.7E-57 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_1861 399ce8c2b55e8b05624b1f046682875e 184 PANTHER PTHR33711:SF2 4 182 7.6E-50 T 19-04-2016 AMED_1861 399ce8c2b55e8b05624b1f046682875e 184 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 7 184 3.0E-63 T 19-04-2016 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 AMED_8394 cb1f4adda5781c799388c3344211e665 227 SUPERFAMILY SSF47979 69 142 6.28E-24 T 19-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AMED_8394 cb1f4adda5781c799388c3344211e665 227 Gene3D G3DSA:1.10.60.10 79 143 1.6E-29 T 19-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AMED_8394 cb1f4adda5781c799388c3344211e665 227 Pfam PF04023 FeoA domain 151 225 1.6E-19 T 19-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMED_8394 cb1f4adda5781c799388c3344211e665 227 Gene3D G3DSA:1.10.10.10 9 76 6.7E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8394 cb1f4adda5781c799388c3344211e665 227 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 10 66 3.8E-16 T 19-04-2016 IPR022687 DTXR-type HTH domain GO:0003677 AMED_8394 cb1f4adda5781c799388c3344211e665 227 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 69 137 7.8E-28 T 19-04-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AMED_8394 cb1f4adda5781c799388c3344211e665 227 PANTHER PTHR33238:SF1 7 225 1.1E-73 T 19-04-2016 AMED_8394 cb1f4adda5781c799388c3344211e665 227 SUPERFAMILY SSF46785 9 68 1.47E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8394 cb1f4adda5781c799388c3344211e665 227 SUPERFAMILY SSF50037 151 225 3.66E-8 T 19-04-2016 IPR008988 Transcriptional repressor, C-terminal AMED_8394 cb1f4adda5781c799388c3344211e665 227 SMART SM00899 149 226 3.0E-18 T 19-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AMED_8394 cb1f4adda5781c799388c3344211e665 227 SMART SM00529 30 129 7.9E-39 T 19-04-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 AMED_8394 cb1f4adda5781c799388c3344211e665 227 PANTHER PTHR33238 7 225 1.1E-73 T 19-04-2016 AMED_4926 8120927e4c3db83b71c5a80ebc52e6da 414 Gene3D G3DSA:1.20.1250.20 8 179 4.4E-14 T 19-04-2016 AMED_4926 8120927e4c3db83b71c5a80ebc52e6da 414 Gene3D G3DSA:1.20.1250.20 209 393 2.0E-11 T 19-04-2016 AMED_4926 8120927e4c3db83b71c5a80ebc52e6da 414 SUPERFAMILY SSF103473 10 397 2.22E-35 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4926 8120927e4c3db83b71c5a80ebc52e6da 414 PANTHER PTHR23513 8 393 2.0E-45 T 19-04-2016 AMED_4926 8120927e4c3db83b71c5a80ebc52e6da 414 Pfam PF07690 Major Facilitator Superfamily 13 350 9.1E-19 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 PANTHER PTHR24220 7 307 3.5E-120 T 19-04-2016 AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 Gene3D G3DSA:3.40.50.300 4 224 9.4E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 SMART SM00382 30 208 3.5E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 SUPERFAMILY SSF52540 5 219 1.29E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 PANTHER PTHR24220:SF414 7 307 3.5E-120 T 19-04-2016 AMED_2827 8322f05a60edf19451a8935007b9e5a4 308 Pfam PF00005 ABC transporter 22 160 7.8E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 Gene3D G3DSA:3.40.630.30 153 303 2.0E-31 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 SMART SM00347 29 129 1.5E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 SUPERFAMILY SSF55729 153 299 3.43E-26 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 Gene3D G3DSA:1.10.10.10 5 145 4.2E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 PANTHER PTHR13947:SF16 152 308 6.9E-47 T 19-04-2016 AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 PANTHER PTHR13947 152 308 6.9E-47 T 19-04-2016 AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 SUPERFAMILY SSF46785 12 146 5.15E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 Pfam PF12802 MarR family 37 93 1.7E-16 T 19-04-2016 AMED_9240 cac9b9b40da9045de1eb50fd6b4c1018 309 Pfam PF13673 Acetyltransferase (GNAT) domain 193 292 1.8E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 19 372 30.554 T 19-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 19 157 8.0E-39 T 19-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 203 362 5.3E-34 T 19-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 PANTHER PTHR21015 19 374 7.1E-103 T 19-04-2016 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 Gene3D G3DSA:3.40.50.2000 17 216 1.9E-61 T 19-04-2016 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 PANTHER PTHR21015:SF22 19 374 7.1E-103 T 19-04-2016 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 19 367 7.9E-84 T 19-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6251 8aa4cbf6d293e8d864b5675ca72b8935 374 SUPERFAMILY SSF53756 19 372 2.69E-96 T 19-04-2016 AMED_6225 8402ffa25c0a64d9a1ff736e45c2660d 786 Gene3D G3DSA:3.40.630.10 52 321 5.9E-49 T 19-04-2016 AMED_6225 8402ffa25c0a64d9a1ff736e45c2660d 786 Pfam PF04389 Peptidase family M28 126 313 1.4E-34 T 19-04-2016 IPR007484 Peptidase M28 AMED_6225 8402ffa25c0a64d9a1ff736e45c2660d 786 PANTHER PTHR12147 509 555 3.8E-46 T 19-04-2016 AMED_6225 8402ffa25c0a64d9a1ff736e45c2660d 786 PANTHER PTHR12147 23 462 3.8E-46 T 19-04-2016 AMED_6225 8402ffa25c0a64d9a1ff736e45c2660d 786 SUPERFAMILY SSF53187 53 320 4.19E-44 T 19-04-2016 AMED_1608 029b767c472e035fac563a4bb0885b59 198 Gene3D G3DSA:1.10.287.1060 17 82 5.3E-4 T 19-04-2016 AMED_1608 029b767c472e035fac563a4bb0885b59 198 SUPERFAMILY SSF140453 17 83 7.32E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_4103 038f3518af31c0e952e799c08e8b5efb 340 PANTHER PTHR30137 1 340 5.7E-220 T 19-04-2016 AMED_4103 038f3518af31c0e952e799c08e8b5efb 340 PANTHER PTHR30137:SF3 1 340 5.7E-220 T 19-04-2016 AMED_4103 038f3518af31c0e952e799c08e8b5efb 340 Pfam PF00296 Luciferase-like monooxygenase 8 278 2.7E-25 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4103 038f3518af31c0e952e799c08e8b5efb 340 Gene3D G3DSA:3.20.20.30 6 340 4.6E-62 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4103 038f3518af31c0e952e799c08e8b5efb 340 SUPERFAMILY SSF51679 7 333 2.09E-56 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1319 f922f0ba8272f93a8333101b90a71802 264 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 103 255 1.3E-12 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_1319 f922f0ba8272f93a8333101b90a71802 264 PANTHER PTHR30055 23 255 4.4E-31 T 19-04-2016 AMED_1319 f922f0ba8272f93a8333101b90a71802 264 PANTHER PTHR30055:SF93 23 255 4.4E-31 T 19-04-2016 AMED_1319 f922f0ba8272f93a8333101b90a71802 264 SUPERFAMILY SSF48498 103 257 2.67E-22 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1319 f922f0ba8272f93a8333101b90a71802 264 Pfam PF00440 Bacterial regulatory proteins, tetR family 40 84 6.6E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1319 f922f0ba8272f93a8333101b90a71802 264 SUPERFAMILY SSF46689 31 94 5.64E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1319 f922f0ba8272f93a8333101b90a71802 264 Gene3D G3DSA:1.10.357.10 26 258 6.1E-58 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0299 3b46d114d53f493106f7164f81707f66 298 Gene3D G3DSA:3.40.50.300 2 226 1.6E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0299 3b46d114d53f493106f7164f81707f66 298 Pfam PF00005 ABC transporter 20 159 1.4E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0299 3b46d114d53f493106f7164f81707f66 298 PANTHER PTHR24220:SF160 6 289 7.6E-96 T 19-04-2016 AMED_0299 3b46d114d53f493106f7164f81707f66 298 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0299 3b46d114d53f493106f7164f81707f66 298 SUPERFAMILY SSF52540 4 219 2.87E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0299 3b46d114d53f493106f7164f81707f66 298 SMART SM00382 29 207 1.5E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0299 3b46d114d53f493106f7164f81707f66 298 PANTHER PTHR24220 6 289 7.6E-96 T 19-04-2016 AMED_2987 456220223f4f8c64719a6d5183beb79b 426 PANTHER PTHR10543:SF37 8 426 8.6E-120 T 19-04-2016 AMED_2987 456220223f4f8c64719a6d5183beb79b 426 PANTHER PTHR10543 8 426 8.6E-120 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_2987 456220223f4f8c64719a6d5183beb79b 426 Pfam PF03055 Retinal pigment epithelial membrane protein 12 423 4.8E-100 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 PANTHER PTHR11732 1 327 5.8E-112 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 PRINTS PR00069 Aldo-keto reductase signature 137 154 7.3E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 PRINTS PR00069 Aldo-keto reductase signature 106 124 7.3E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 PRINTS PR00069 Aldo-keto reductase signature 41 65 7.3E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 Pfam PF00248 Aldo/keto reductase family 17 310 2.2E-64 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 Gene3D G3DSA:3.20.20.100 2 311 1.5E-87 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_3079 66f9337910499a0954325a3a4d2ec7d1 352 SUPERFAMILY SSF51430 1 312 2.23E-92 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 328 344 6.4E-46 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 6.4E-46 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 6.4E-46 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 11 33 6.4E-46 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 6.4E-46 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 6.4E-46 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PANTHER PTHR13789:SF90 12 428 5.5E-94 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.30.9.10 165 270 3.0E-13 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.30.9.10 325 353 3.0E-13 T 19-04-2016 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 SUPERFAMILY SSF51905 264 351 7.86E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 SUPERFAMILY SSF51905 11 174 7.86E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 Pfam PF01494 FAD binding domain 9 341 5.5E-83 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.50.50.60 275 315 6.3E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 Gene3D G3DSA:3.50.50.60 9 164 6.3E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5632 7552d40d5fb10664da749f726d4a87f8 514 PANTHER PTHR13789 12 428 5.5E-94 T 19-04-2016 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 SUPERFAMILY SSF50621 257 412 4.19E-37 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 335 345 3.9E-8 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 45 72 3.9E-8 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 89 113 3.9E-8 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01182 Ornithine decarboxylase signature 119 141 3.9E-8 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PANTHER PTHR11482 8 419 3.0E-91 T 19-04-2016 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 28 274 1.8E-41 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 SUPERFAMILY SSF51419 17 275 7.41E-62 T 19-04-2016 IPR029066 PLP-binding barrel AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PANTHER PTHR11482:SF5 8 419 3.0E-91 T 19-04-2016 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 290 389 1.0E-11 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 Gene3D G3DSA:3.20.20.10 26 261 5.8E-65 T 19-04-2016 IPR029066 PLP-binding barrel AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 79 3.4E-8 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 190 3.4E-8 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 264 283 3.4E-8 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 47 65 3.4E-8 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_3629 39ff51bb40ea87c6c84ad79f412b57e5 427 Gene3D G3DSA:2.40.37.10 262 413 4.3E-35 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_7852 ef9c6cef2c88577b3b70b3fc68c55289 422 PANTHER PTHR11986 3 422 2.6E-110 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_7852 ef9c6cef2c88577b3b70b3fc68c55289 422 SUPERFAMILY SSF53383 6 418 1.19E-101 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7852 ef9c6cef2c88577b3b70b3fc68c55289 422 Pfam PF00202 Aminotransferase class-III 22 414 3.0E-86 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_7852 ef9c6cef2c88577b3b70b3fc68c55289 422 Gene3D G3DSA:3.40.640.10 57 317 4.2E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7852 ef9c6cef2c88577b3b70b3fc68c55289 422 Gene3D G3DSA:3.90.1150.10 319 418 2.4E-36 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7852 ef9c6cef2c88577b3b70b3fc68c55289 422 Gene3D G3DSA:3.90.1150.10 4 56 2.4E-36 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_6236 5cb7240d25413064ebf217bb71425b85 72 SMART SM00923 5 55 5.6E-19 T 19-04-2016 IPR005153 MbtH-like protein AMED_6236 5cb7240d25413064ebf217bb71425b85 72 PANTHER PTHR38444:SF1 3 71 7.1E-23 T 19-04-2016 AMED_6236 5cb7240d25413064ebf217bb71425b85 72 Pfam PF03621 MbtH-like protein 8 54 1.8E-20 T 19-04-2016 IPR005153 MbtH-like protein AMED_6236 5cb7240d25413064ebf217bb71425b85 72 SUPERFAMILY SSF160582 8 70 2.88E-26 T 19-04-2016 AMED_6236 5cb7240d25413064ebf217bb71425b85 72 PANTHER PTHR38444 3 71 7.1E-23 T 19-04-2016 AMED_6236 5cb7240d25413064ebf217bb71425b85 72 Gene3D G3DSA:3.90.820.10 13 71 1.3E-30 T 19-04-2016 AMED_3211 329ca24994535656d1faabc696348d36 192 PANTHER PTHR10245 12 180 9.2E-32 T 19-04-2016 AMED_3211 329ca24994535656d1faabc696348d36 192 Pfam PF13560 Helix-turn-helix domain 12 70 2.7E-16 T 19-04-2016 AMED_3211 329ca24994535656d1faabc696348d36 192 Gene3D G3DSA:2.60.120.10 99 177 2.7E-11 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3211 329ca24994535656d1faabc696348d36 192 PANTHER PTHR10245:SF20 12 180 9.2E-32 T 19-04-2016 AMED_3211 329ca24994535656d1faabc696348d36 192 Gene3D G3DSA:1.10.260.40 5 80 9.5E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3211 329ca24994535656d1faabc696348d36 192 SMART SM00530 15 70 4.9E-18 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3211 329ca24994535656d1faabc696348d36 192 SUPERFAMILY SSF47413 6 75 9.57E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3211 329ca24994535656d1faabc696348d36 192 SUPERFAMILY SSF51182 66 176 1.98E-21 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3211 329ca24994535656d1faabc696348d36 192 Pfam PF07883 Cupin domain 119 177 3.6E-11 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:3.10.20.30 13 67 2.0E-8 T 19-04-2016 IPR012675 Beta-grasp domain AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 152 163 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 PANTHER PTHR11615:SF6 14 285 4.4E-52 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 196 207 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 235 253 - T 19-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Pfam PF00037 4Fe-4S binding domain 194 211 3.4E-7 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 PANTHER PTHR11615 14 285 4.4E-52 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:3.30.70.20 142 203 2.3E-12 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:3.30.70.20 204 237 2.9E-6 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 SMART SM00926 230 284 2.0E-16 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 11 87 5.2E-24 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 SUPERFAMILY SSF54292 13 127 5.76E-31 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 SUPERFAMILY SSF53706 194 283 2.15E-16 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Gene3D G3DSA:2.20.25.90 238 284 9.2E-20 T 19-04-2016 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 232 284 2.2E-18 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_4579 62dcab570d686d8a08d1f71e90f3527c 285 SUPERFAMILY SSF54862 86 218 2.26E-22 T 19-04-2016 AMED_0964 7c3652971aacaedce95e31fc8fc9696e 195 Pfam PF01872 RibD C-terminal domain 4 175 1.1E-12 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_0964 7c3652971aacaedce95e31fc8fc9696e 195 Gene3D G3DSA:3.40.430.10 4 194 9.9E-28 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_0964 7c3652971aacaedce95e31fc8fc9696e 195 SUPERFAMILY SSF53597 4 194 8.84E-21 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_0964 7c3652971aacaedce95e31fc8fc9696e 195 PANTHER PTHR38011:SF1 2 195 6.6E-31 T 19-04-2016 AMED_0964 7c3652971aacaedce95e31fc8fc9696e 195 PANTHER PTHR38011 2 195 6.6E-31 T 19-04-2016 AMED_7486 27e53961dd44a209db93e6205f26c1e0 287 Gene3D G3DSA:1.10.3720.10 10 274 2.3E-52 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7486 27e53961dd44a209db93e6205f26c1e0 287 PANTHER PTHR32243:SF28 2 287 2.2E-144 T 19-04-2016 AMED_7486 27e53961dd44a209db93e6205f26c1e0 287 PANTHER PTHR32243 2 287 2.2E-144 T 19-04-2016 AMED_7486 27e53961dd44a209db93e6205f26c1e0 287 SUPERFAMILY SSF161098 11 286 2.09E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7486 27e53961dd44a209db93e6205f26c1e0 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 273 4.1E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3046 7da2cc1753e560434ece164e465d1078 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 28 90 8.2E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3046 7da2cc1753e560434ece164e465d1078 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 1.4E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3046 7da2cc1753e560434ece164e465d1078 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 1.4E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3046 7da2cc1753e560434ece164e465d1078 258 Gene3D G3DSA:3.40.1410.10 88 254 2.7E-44 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_3046 7da2cc1753e560434ece164e465d1078 258 SUPERFAMILY SSF46785 19 94 1.77E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3046 7da2cc1753e560434ece164e465d1078 258 SMART SM00345 31 90 1.3E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3046 7da2cc1753e560434ece164e465d1078 258 SMART SM00866 110 248 1.4E-32 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_3046 7da2cc1753e560434ece164e465d1078 258 PANTHER PTHR11751:SF10 138 162 2.0E-17 T 19-04-2016 AMED_3046 7da2cc1753e560434ece164e465d1078 258 PANTHER PTHR11751:SF10 33 92 2.0E-17 T 19-04-2016 AMED_3046 7da2cc1753e560434ece164e465d1078 258 Pfam PF07702 UTRA domain 111 247 7.6E-37 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_3046 7da2cc1753e560434ece164e465d1078 258 Gene3D G3DSA:1.10.10.10 20 87 3.5E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3046 7da2cc1753e560434ece164e465d1078 258 SUPERFAMILY SSF64288 78 253 3.93E-45 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_3046 7da2cc1753e560434ece164e465d1078 258 PANTHER PTHR11751 138 162 2.0E-17 T 19-04-2016 AMED_3046 7da2cc1753e560434ece164e465d1078 258 PANTHER PTHR11751 33 92 2.0E-17 T 19-04-2016 AMED_3206 9076c81ad4758ca987b3451a8766714a 502 Pfam PF00083 Sugar (and other) transporter 62 479 5.1E-48 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_3206 9076c81ad4758ca987b3451a8766714a 502 SUPERFAMILY SSF103473 18 478 1.57E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3206 9076c81ad4758ca987b3451a8766714a 502 Gene3D G3DSA:1.20.1250.20 33 225 3.8E-26 T 19-04-2016 AMED_3206 9076c81ad4758ca987b3451a8766714a 502 Gene3D G3DSA:1.20.1250.20 282 470 1.9E-17 T 19-04-2016 AMED_3206 9076c81ad4758ca987b3451a8766714a 502 PANTHER PTHR24064:SF172 17 478 2.6E-71 T 19-04-2016 AMED_3206 9076c81ad4758ca987b3451a8766714a 502 PANTHER PTHR24064 17 478 2.6E-71 T 19-04-2016 AMED_0036 a656f1f1fed9201431671e8012f4ecbb 266 Gene3D G3DSA:1.20.1540.10 35 214 2.0E-38 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_0036 a656f1f1fed9201431671e8012f4ecbb 266 Pfam PF01694 Rhomboid family 80 215 2.5E-30 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_0036 a656f1f1fed9201431671e8012f4ecbb 266 SUPERFAMILY SSF144091 33 217 5.49E-40 T 19-04-2016 AMED_0036 a656f1f1fed9201431671e8012f4ecbb 266 PANTHER PTHR22936 29 241 1.0E-35 T 19-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 AMED_3757 bb4f77f1a8e3b727e80afcc671855356 95 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 31 88 1.8E-18 T 19-04-2016 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 Pfam PF00732 GMC oxidoreductase 7 297 5.8E-94 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 Pfam PF05199 GMC oxidoreductase 385 515 2.1E-35 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 SUPERFAMILY SSF54373 291 469 1.77E-42 T 19-04-2016 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 PIRSF PIRSF000137 1 524 5.4E-153 T 19-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 PANTHER PTHR11552 3 522 1.3E-210 T 19-04-2016 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:3.50.50.60 4 127 1.5E-125 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:3.50.50.60 188 314 1.5E-125 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 Gene3D G3DSA:3.50.50.60 462 521 1.5E-125 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 PANTHER PTHR11552:SF51 3 522 1.3E-210 T 19-04-2016 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 SUPERFAMILY SSF51905 5 289 9.5E-90 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9052 d03e1e736cda604f57995dfcc6e4977a 524 SUPERFAMILY SSF51905 468 522 9.5E-90 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 30 532 6.4E-219 T 19-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 SUPERFAMILY SSF81442 25 535 6.54E-179 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PANTHER PTHR10422:SF6 13 550 1.9E-294 T 19-04-2016 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 27 52 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 74 97 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 224 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 194 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 144 156 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 234 255 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 386 405 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 255 276 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 125 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 301 316 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 436 457 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 323 344 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 376 4.3E-99 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 257 311 - T 19-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 PANTHER PTHR10422 13 550 1.9E-294 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 36 480 1.4E-151 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_7729 9c105c14f43daa249e39c5b0f880a63f 595 Gene3D G3DSA:1.20.210.10 22 546 1.6E-197 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 Gene3D G3DSA:3.10.105.10 290 500 9.1E-34 T 19-04-2016 AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 Gene3D G3DSA:3.90.76.10 40 171 1.4E-27 T 19-04-2016 AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 440 6.7E-66 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 Gene3D G3DSA:3.40.190.10 172 289 1.0E-30 T 19-04-2016 AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 SUPERFAMILY SSF53850 24 526 6.6E-90 T 19-04-2016 AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 PIRSF PIRSF002741 13 532 2.9E-61 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_3741 c685b736f0d4a266f3341063abdf3e10 547 PANTHER PTHR30290 1 546 1.8E-85 T 19-04-2016 AMED_6746 23da43057802721570f33261b03cebb2 510 SMART SM00304 199 261 3.1E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6746 23da43057802721570f33261b03cebb2 510 SUPERFAMILY SSF55874 325 490 3.14E-38 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6746 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 470 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6746 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 431 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6746 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 445 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6746 23da43057802721570f33261b03cebb2 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_6746 23da43057802721570f33261b03cebb2 510 SMART SM00387 379 491 2.7E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6746 23da43057802721570f33261b03cebb2 510 Gene3D G3DSA:1.10.287.130 261 322 1.3E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6746 23da43057802721570f33261b03cebb2 510 SUPERFAMILY SSF47384 256 336 9.42E-19 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6746 23da43057802721570f33261b03cebb2 510 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 489 4.3E-20 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6746 23da43057802721570f33261b03cebb2 510 Pfam PF00512 His Kinase A (phospho-acceptor) domain 271 336 3.9E-18 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6746 23da43057802721570f33261b03cebb2 510 SMART SM00388 269 336 2.7E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_6746 23da43057802721570f33261b03cebb2 510 Gene3D G3DSA:3.30.565.10 323 490 2.6E-41 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6746 23da43057802721570f33261b03cebb2 510 PANTHER PTHR24423 9 26 4.4E-69 T 19-04-2016 AMED_6746 23da43057802721570f33261b03cebb2 510 PANTHER PTHR24423 193 492 4.4E-69 T 19-04-2016 AMED_6746 23da43057802721570f33261b03cebb2 510 Pfam PF00672 HAMP domain 180 255 6.6E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_1360 d39f7437bcfbf41cc6d4a5d7075d58ba 380 Pfam PF00082 Subtilase family 98 362 1.8E-18 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1360 d39f7437bcfbf41cc6d4a5d7075d58ba 380 SUPERFAMILY SSF52743 98 352 4.45E-33 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1360 d39f7437bcfbf41cc6d4a5d7075d58ba 380 PANTHER PTHR10795 98 352 8.6E-13 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_1360 d39f7437bcfbf41cc6d4a5d7075d58ba 380 Gene3D G3DSA:3.40.50.200 92 361 1.3E-35 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_1360 d39f7437bcfbf41cc6d4a5d7075d58ba 380 PANTHER PTHR10795:SF419 98 352 8.6E-13 T 19-04-2016 AMED_4768 02c401e738c6b1245eee8459c25c1cd5 75 PANTHER PTHR38444:SF1 10 72 2.0E-25 T 19-04-2016 AMED_4768 02c401e738c6b1245eee8459c25c1cd5 75 PANTHER PTHR38444 10 72 2.0E-25 T 19-04-2016 AMED_4768 02c401e738c6b1245eee8459c25c1cd5 75 SMART SM00923 2 52 8.7E-21 T 19-04-2016 IPR005153 MbtH-like protein AMED_4768 02c401e738c6b1245eee8459c25c1cd5 75 SUPERFAMILY SSF160582 5 68 7.72E-27 T 19-04-2016 AMED_4768 02c401e738c6b1245eee8459c25c1cd5 75 Gene3D G3DSA:3.90.820.10 10 69 2.1E-30 T 19-04-2016 AMED_4768 02c401e738c6b1245eee8459c25c1cd5 75 Pfam PF03621 MbtH-like protein 5 52 2.7E-21 T 19-04-2016 IPR005153 MbtH-like protein AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 Gene3D G3DSA:3.40.50.720 13 259 1.1E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 PANTHER PTHR10953:SF153 3 391 9.9E-239 T 19-04-2016 AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 SUPERFAMILY SSF69572 8 358 1.19E-98 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 Pfam PF00899 ThiF family 22 258 1.6E-61 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 SMART SM00450 289 386 1.2E-26 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 PANTHER PTHR10953 3 391 9.9E-239 T 19-04-2016 AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 Gene3D G3DSA:3.40.250.10 278 385 6.5E-29 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1119 c55dabe71cca8226df43a69a1cfc255a 391 Pfam PF00581 Rhodanese-like domain 289 382 9.5E-14 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_0632 9391b63ab27bad553ad222e456bde1d1 310 PANTHER PTHR23024 32 283 4.6E-61 T 19-04-2016 AMED_0632 9391b63ab27bad553ad222e456bde1d1 310 PANTHER PTHR23024:SF24 32 283 4.6E-61 T 19-04-2016 AMED_0632 9391b63ab27bad553ad222e456bde1d1 310 Gene3D G3DSA:3.40.50.1820 14 288 8.4E-78 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0632 9391b63ab27bad553ad222e456bde1d1 310 SUPERFAMILY SSF53474 43 284 8.58E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0632 9391b63ab27bad553ad222e456bde1d1 310 Pfam PF07859 alpha/beta hydrolase fold 77 285 2.0E-59 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_6896 09b5e1bc14e3875cca519f8d6e19c9dc 93 PANTHER PTHR33677:SF3 7 92 3.6E-29 T 19-04-2016 AMED_6896 09b5e1bc14e3875cca519f8d6e19c9dc 93 PANTHER PTHR33677 7 92 3.6E-29 T 19-04-2016 AMED_6896 09b5e1bc14e3875cca519f8d6e19c9dc 93 Pfam PF02583 Metal-sensitive transcriptional repressor 7 88 3.9E-30 T 19-04-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 PANTHER PTHR16305:SF28 207 677 3.8E-38 T 19-04-2016 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 PANTHER PTHR16305:SF28 967 989 3.8E-38 T 19-04-2016 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF46894 5 79 1.84E-8 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 SMART SM00862 18 90 0.002 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF48452 108 249 2.15E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 SMART SM01043 98 237 2.5E-31 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 Gene3D G3DSA:3.40.50.300 252 299 3.9E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 Pfam PF13191 AAA ATPase domain 252 418 1.1E-24 T 19-04-2016 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 Pfam PF03704 Bacterial transcriptional activator domain 98 236 1.6E-18 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF52540 250 311 1.81E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 SUPERFAMILY SSF52540 366 492 1.81E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 PANTHER PTHR16305 967 989 3.8E-38 T 19-04-2016 AMED_2697 734e28e9dac9eaa52347b671d82d4545 997 PANTHER PTHR16305 207 677 3.8E-38 T 19-04-2016 AMED_6814 f0ad8e802e43b1ca68a48392745096b3 206 Gene3D G3DSA:3.40.30.10 71 164 1.3E-4 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6814 f0ad8e802e43b1ca68a48392745096b3 206 Gene3D G3DSA:3.40.30.10 6 55 6.7E-7 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6814 f0ad8e802e43b1ca68a48392745096b3 206 SUPERFAMILY SSF52833 6 177 2.4E-21 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6814 f0ad8e802e43b1ca68a48392745096b3 206 Pfam PF01323 DSBA-like thioredoxin domain 9 164 9.8E-9 T 19-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 AMED_4566 4a1095689e2f1ed2a9007b3bdac1d6fe 432 Gene3D G3DSA:1.20.1250.20 250 426 2.6E-17 T 19-04-2016 AMED_4566 4a1095689e2f1ed2a9007b3bdac1d6fe 432 Pfam PF07690 Major Facilitator Superfamily 253 419 1.6E-13 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4566 4a1095689e2f1ed2a9007b3bdac1d6fe 432 SUPERFAMILY SSF103473 19 419 5.1E-39 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4566 4a1095689e2f1ed2a9007b3bdac1d6fe 432 Gene3D G3DSA:1.20.1250.20 29 212 2.1E-12 T 19-04-2016 AMED_4566 4a1095689e2f1ed2a9007b3bdac1d6fe 432 PANTHER PTHR11360 26 415 5.4E-30 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF52540 119 386 1.01E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:1.10.260.40 45 99 1.2E-4 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:1.25.40.10 702 881 1.2E-29 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:1.25.40.10 554 701 4.0E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF48452 552 683 1.23E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 Pfam PF13424 Tetratricopeptide repeat 726 796 2.5E-9 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 PRINTS PR00364 Disease resistance protein signature 150 165 1.5E-6 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 PRINTS PR00364 Disease resistance protein signature 228 242 1.5E-6 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 PRINTS PR00364 Disease resistance protein signature 316 330 1.5E-6 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF47413 46 98 9.07E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 Pfam PF00931 NB-ARC domain 135 392 5.4E-12 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 PANTHER PTHR22845:SF4 107 472 4.7E-58 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 PANTHER PTHR22845 107 472 4.7E-58 T 19-04-2016 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 Gene3D G3DSA:3.40.50.300 129 244 4.7E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 847 880 140.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 568 601 36.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 687 720 88.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 767 800 10.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 608 641 210.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SMART SM00028 727 760 6.8 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_3889 bd525e26c8ff2285f60bd066e0940304 901 SUPERFAMILY SSF48452 692 877 4.93E-24 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 39 7.3E-15 T 19-04-2016 IPR019933 DivIVA domain AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 Pfam PF05103 DivIVA protein 3 66 4.4E-12 T 19-04-2016 IPR007793 DivIVA family AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 SUPERFAMILY SSF58113 119 247 9.94E-5 T 19-04-2016 AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 Gene3D G3DSA:1.20.5.620 150 193 1.3E-4 T 19-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 PANTHER PTHR35794:SF2 120 260 1.4E-22 T 19-04-2016 AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 PANTHER PTHR35794:SF2 1 70 1.4E-22 T 19-04-2016 AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 PANTHER PTHR35794 120 260 1.4E-22 T 19-04-2016 AMED_2960 b8c4e38d775fcbd2d7e8db99df45b1ec 284 PANTHER PTHR35794 1 70 1.4E-22 T 19-04-2016 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 SUPERFAMILY SSF48498 88 197 1.6E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 PANTHER PTHR30055 7 213 3.2E-23 T 19-04-2016 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 PANTHER PTHR30055:SF18 7 213 3.2E-23 T 19-04-2016 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 SUPERFAMILY SSF46689 10 91 4.79E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 Gene3D G3DSA:1.10.357.10 8 204 8.2E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 3.7E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5260 2b4bdaf6a52aff95e2233be80626a5bb 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0679 8fa003e3d7e8b7eb2844a2c630d2312f 103 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 10 100 21.346 T 19-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMED_0679 8fa003e3d7e8b7eb2844a2c630d2312f 103 Gene3D G3DSA:3.30.70.330 8 99 1.0E-34 T 19-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 AMED_0679 8fa003e3d7e8b7eb2844a2c630d2312f 103 ProSitePatterns PS00050 Ribosomal protein L23 signature. 82 97 - T 19-04-2016 IPR001014 Ribosomal protein L23/L25, conserved site AMED_0679 8fa003e3d7e8b7eb2844a2c630d2312f 103 SUPERFAMILY SSF54189 8 98 3.96E-32 T 19-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0679 8fa003e3d7e8b7eb2844a2c630d2312f 103 Pfam PF00276 Ribosomal protein L23 11 93 4.1E-32 T 19-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMED_0679 8fa003e3d7e8b7eb2844a2c630d2312f 103 PANTHER PTHR11620 8 98 2.6E-37 T 19-04-2016 AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 PANTHER PTHR24220:SF529 5 277 1.7E-111 T 19-04-2016 AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 PANTHER PTHR24220 5 277 1.7E-111 T 19-04-2016 AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 SUPERFAMILY SSF52540 3 234 1.0E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 SMART SM00382 28 212 1.3E-19 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 Pfam PF00005 ABC transporter 20 163 1.3E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 212 308 1.5E-15 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 214 276 3.8E-14 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 Gene3D G3DSA:3.40.50.300 3 241 3.3E-76 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3465 dbec62fd84c10f7ab8c3140d692865b1 318 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7867 6b2c431aba8c21cebcf5c9888021fafd 275 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 275 72.306 T 19-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 AMED_7867 6b2c431aba8c21cebcf5c9888021fafd 275 Pfam PF12706 Beta-lactamase superfamily domain 45 229 1.8E-21 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7867 6b2c431aba8c21cebcf5c9888021fafd 275 SUPERFAMILY SSF56281 2 273 5.01E-32 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7867 6b2c431aba8c21cebcf5c9888021fafd 275 Gene3D G3DSA:3.60.15.10 2 275 6.5E-64 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3816 8f29e45f7911bdacd890d7a516e51e64 363 Pfam PF00296 Luciferase-like monooxygenase 11 284 3.3E-39 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3816 8f29e45f7911bdacd890d7a516e51e64 363 PANTHER PTHR30137 1 331 6.8E-40 T 19-04-2016 AMED_3816 8f29e45f7911bdacd890d7a516e51e64 363 Gene3D G3DSA:3.20.20.30 1 325 2.5E-69 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3816 8f29e45f7911bdacd890d7a516e51e64 363 SUPERFAMILY SSF51679 1 321 6.02E-62 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7698 bdc6e53f6d784c74399682f34dbaf82c 295 SUPERFAMILY SSF48239 243 263 1.16E-7 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_7698 bdc6e53f6d784c74399682f34dbaf82c 295 SUPERFAMILY SSF48239 43 186 1.16E-7 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_7698 bdc6e53f6d784c74399682f34dbaf82c 295 Gene3D G3DSA:1.50.10.20 68 161 1.3E-4 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_7698 bdc6e53f6d784c74399682f34dbaf82c 295 Gene3D G3DSA:1.50.10.20 252 281 1.3E-4 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_7603 0b8fceec48b1303b08fde2b964292ad8 400 Pfam PF13556 PucR C-terminal helix-turn-helix domain 332 388 2.5E-17 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_7603 0b8fceec48b1303b08fde2b964292ad8 400 PANTHER PTHR33744:SF3 255 398 3.9E-21 T 19-04-2016 AMED_7603 0b8fceec48b1303b08fde2b964292ad8 400 PANTHER PTHR33744 255 398 3.9E-21 T 19-04-2016 AMED_7603 0b8fceec48b1303b08fde2b964292ad8 400 Gene3D G3DSA:1.10.10.10 328 367 1.9E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 PANTHER PTHR11019 50 74 3.3E-21 T 19-04-2016 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 PANTHER PTHR11019 207 321 3.3E-21 T 19-04-2016 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 Pfam PF12833 Helix-turn-helix domain 243 321 8.0E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 SMART SM00342 237 320 8.8E-23 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 Gene3D G3DSA:1.10.10.60 274 322 4.4E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 SUPERFAMILY SSF52317 5 201 2.24E-15 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 Gene3D G3DSA:1.10.10.60 220 273 2.1E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 Gene3D G3DSA:3.40.50.880 5 199 1.2E-14 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_3872 790330eef3cb5a9bbd2e426c3ca0b96e 324 SUPERFAMILY SSF46689 273 322 1.39E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 Pfam PF00977 Histidine biosynthesis protein 1 224 2.7E-58 T 19-04-2016 IPR006062 Histidine biosynthesis GO:0000105 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 231 29.131 T 19-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 PANTHER PTHR21235:SF15 3 232 2.3E-78 T 19-04-2016 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 SUPERFAMILY SSF51366 2 230 8.63E-56 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 PANTHER PTHR21235 3 232 2.3E-78 T 19-04-2016 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 Gene3D G3DSA:3.20.20.70 1 231 8.7E-66 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2270 2b51d7a5a4127a69f9811c422864ea1b 235 TIGRFAM TIGR01919 hisA-trpF: bifunctional HisA/TrpF protein 1 232 4.0E-118 T 19-04-2016 IPR010188 Bifunctional HisA/TrpF GO:0000105|GO:0000162|GO:0003949|GO:0004640|GO:0005737 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 AMED_5971 7188e5c68448fcb0d2e463a9a0768714 484 Gene3D G3DSA:3.40.309.10 233 417 4.2E-49 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_5971 7188e5c68448fcb0d2e463a9a0768714 484 Pfam PF00171 Aldehyde dehydrogenase family 3 422 3.4E-35 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_5971 7188e5c68448fcb0d2e463a9a0768714 484 PANTHER PTHR11699 17 482 1.2E-97 T 19-04-2016 AMED_5971 7188e5c68448fcb0d2e463a9a0768714 484 PANTHER PTHR11699:SF10 17 482 1.2E-97 T 19-04-2016 AMED_5971 7188e5c68448fcb0d2e463a9a0768714 484 SUPERFAMILY SSF53720 5 478 8.38E-82 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_5971 7188e5c68448fcb0d2e463a9a0768714 484 Gene3D G3DSA:3.40.605.10 4 232 4.0E-31 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_0605 5be4e221f8153a1cf5b3e7787799dc8d 342 Pfam PF02470 MlaD protein 38 110 5.3E-16 T 19-04-2016 IPR003399 Mce/MlaD AMED_0605 5be4e221f8153a1cf5b3e7787799dc8d 342 PANTHER PTHR33371:SF4 1 314 2.2E-96 T 19-04-2016 AMED_0605 5be4e221f8153a1cf5b3e7787799dc8d 342 PANTHER PTHR33371 1 314 2.2E-96 T 19-04-2016 AMED_0605 5be4e221f8153a1cf5b3e7787799dc8d 342 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 295 2.8E-72 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_6821 eae662c8ba571db7517619c4421066ec 316 SUPERFAMILY SSF82861 87 142 7.19E-12 T 19-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMED_6821 eae662c8ba571db7517619c4421066ec 316 Gene3D G3DSA:3.30.70.100 215 298 1.1E-5 T 19-04-2016 AMED_6821 eae662c8ba571db7517619c4421066ec 316 Gene3D G3DSA:2.30.30.60 159 201 3.6E-12 T 19-04-2016 AMED_6821 eae662c8ba571db7517619c4421066ec 316 PANTHER PTHR30460 9 69 1.6E-87 T 19-04-2016 AMED_6821 eae662c8ba571db7517619c4421066ec 316 PANTHER PTHR30460 85 306 1.6E-87 T 19-04-2016 AMED_6821 eae662c8ba571db7517619c4421066ec 316 SUPERFAMILY SSF50182 143 200 4.25E-12 T 19-04-2016 IPR010920 LSM domain AMED_6821 eae662c8ba571db7517619c4421066ec 316 SUPERFAMILY SSF82689 208 302 2.22E-11 T 19-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMED_6821 eae662c8ba571db7517619c4421066ec 316 Pfam PF00924 Mechanosensitive ion channel 102 298 2.2E-36 T 19-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 244 262 2.7E-21 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 381 397 2.7E-21 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 591 606 2.7E-21 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 173 198 2.7E-21 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 537 555 2.7E-21 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PANTHER PTHR11686 524 726 2.0E-245 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PANTHER PTHR11686:SF12 139 496 2.0E-245 T 19-04-2016 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 Gene3D G3DSA:3.10.180.10 6 120 1.8E-18 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PANTHER PTHR11686 139 496 2.0E-245 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 SUPERFAMILY SSF54593 4 118 2.89E-18 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 Pfam PF01019 Gamma-glutamyltranspeptidase 166 718 1.6E-103 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 PANTHER PTHR11686:SF12 524 726 2.0E-245 T 19-04-2016 AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 SUPERFAMILY SSF56235 532 725 1.47E-121 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0106 4d44748f50cc8a682573dd663ff48b14 726 SUPERFAMILY SSF56235 135 497 1.47E-121 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 PANTHER PTHR21445 4 260 3.5E-43 T 19-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 SUPERFAMILY SSF51658 4 259 5.24E-52 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 Pfam PF01261 Xylose isomerase-like TIM barrel 46 220 1.2E-21 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 59 67 - T 19-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 Gene3D G3DSA:3.20.20.150 4 258 8.9E-57 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 SMART SM00518 5 259 2.4E-42 T 19-04-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AMED_9292 3c9a9252431bae9427f95c3e5678ee60 260 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 165 172 - T 19-04-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 Gene3D G3DSA:3.40.50.2300 168 328 1.1E-54 T 19-04-2016 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 47 5.1E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 SMART SM00354 1 71 3.8E-23 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 Pfam PF13377 Periplasmic binding protein-like domain 169 327 7.2E-39 T 19-04-2016 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 Gene3D G3DSA:3.40.50.2300 59 167 4.6E-34 T 19-04-2016 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 SUPERFAMILY SSF47413 2 59 3.84E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 PANTHER PTHR30146 2 330 1.8E-108 T 19-04-2016 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 SUPERFAMILY SSF53822 61 328 1.63E-70 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3423 80640ec1c8f12c42e856efc2af584a01 331 Gene3D G3DSA:1.10.260.40 4 58 8.4E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 16 529 1.1E-174 T 19-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 SUPERFAMILY SSF110921 409 526 8.24E-25 T 19-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 PANTHER PTHR10277 13 529 4.1E-217 T 19-04-2016 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 PANTHER PTHR10277:SF5 13 529 4.1E-217 T 19-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 SUPERFAMILY SSF51569 11 305 1.54E-71 T 19-04-2016 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 Gene3D G3DSA:3.20.20.70 10 360 1.2E-103 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 Pfam PF00682 HMGL-like 16 266 1.9E-42 T 19-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 22 38 - T 19-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 SMART SM00917 387 530 3.6E-38 T 19-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_1697 c4eddd129a758ea618a26295c90a7dda 534 Pfam PF08502 LeuA allosteric (dimerisation) domain 387 527 1.8E-27 T 19-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 AMED_3370 342279f2d4a2ae59b62851a06faefb70 324 PANTHER PTHR10907:SF33 22 191 1.3E-25 T 19-04-2016 AMED_3370 342279f2d4a2ae59b62851a06faefb70 324 Gene3D G3DSA:3.40.50.1820 43 321 1.3E-76 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3370 342279f2d4a2ae59b62851a06faefb70 324 SUPERFAMILY SSF53474 43 321 7.75E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3370 342279f2d4a2ae59b62851a06faefb70 324 Pfam PF00756 Putative esterase 53 312 1.7E-34 T 19-04-2016 IPR000801 Putative esterase AMED_3370 342279f2d4a2ae59b62851a06faefb70 324 PANTHER PTHR10907 22 191 1.3E-25 T 19-04-2016 AMED_1232 8d5a432e0526bc21700cd100283a54f8 242 Pfam PF13829 Domain of unknown function (DUF4191) 19 233 3.1E-85 T 19-04-2016 IPR025445 Protein of unknown function DUF4191 AMED_1232 8d5a432e0526bc21700cd100283a54f8 242 ProDom PD037701 MEMBRANE INTEGRAL TRANSMEMBRANE RV2219/MT2276 NARROWLY PROBABLE PRECURSOR SIGNAL MLCB22.21 27 227 2.0E-62 T 19-04-2016 AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 290 5.6E-76 T 19-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 Gene3D G3DSA:3.40.50.300 8 173 1.4E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 SUPERFAMILY SSF52540 9 148 4.44E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 Gene3D G3DSA:1.10.287.890 200 280 1.2E-23 T 19-04-2016 AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 303 27.083 T 19-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 Pfam PF01715 IPP transferase 40 283 5.3E-75 T 19-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 AMED_2384 917caeee7b186d3aa6e1446974f6360e 303 PANTHER PTHR11088 8 287 7.5E-108 T 19-04-2016 AMED_8706 c2451d797d6891e31eb551e98321ca27 462 SUPERFAMILY SSF52540 212 427 5.76E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8706 c2451d797d6891e31eb551e98321ca27 462 PANTHER PTHR23077 249 445 3.3E-29 T 19-04-2016 AMED_8706 c2451d797d6891e31eb551e98321ca27 462 Gene3D G3DSA:3.40.50.300 215 387 6.1E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8706 c2451d797d6891e31eb551e98321ca27 462 SMART SM00382 247 374 6.0E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8706 c2451d797d6891e31eb551e98321ca27 462 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 251 371 6.8E-16 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_1379 db2fa530551bed04fc04879e27c87812 283 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 267 3.4E-25 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_1379 db2fa530551bed04fc04879e27c87812 283 PANTHER PTHR11795:SF398 1 283 3.5E-56 T 19-04-2016 AMED_1379 db2fa530551bed04fc04879e27c87812 283 PANTHER PTHR11795 1 283 3.5E-56 T 19-04-2016 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 Gene3D G3DSA:3.50.50.60 271 349 1.1E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 Gene3D G3DSA:3.50.50.60 2 174 1.1E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 Pfam PF01494 FAD binding domain 2 345 1.1E-30 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 Gene3D G3DSA:3.50.50.60 217 268 1.4E-6 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 PANTHER PTHR13789:SF186 3 352 5.0E-65 T 19-04-2016 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 PANTHER PTHR13789 3 352 5.0E-65 T 19-04-2016 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 SUPERFAMILY SSF51905 2 169 8.98E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 SUPERFAMILY SSF51905 271 352 8.98E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 9.6E-21 T 19-04-2016 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 9.6E-21 T 19-04-2016 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 9.6E-21 T 19-04-2016 AMED_9179 5027ad35bc2dc1e1f4562ddc344e3850 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 9.6E-21 T 19-04-2016 AMED_2782 ffcd6d74201acd4ab507275bbe6789ec 334 Pfam PF00535 Glycosyl transferase family 2 41 166 2.2E-14 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_2782 ffcd6d74201acd4ab507275bbe6789ec 334 Gene3D G3DSA:3.90.550.10 40 214 1.4E-14 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2782 ffcd6d74201acd4ab507275bbe6789ec 334 PANTHER PTHR10859 20 214 7.6E-35 T 19-04-2016 AMED_2782 ffcd6d74201acd4ab507275bbe6789ec 334 SUPERFAMILY SSF53448 40 288 6.68E-63 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2782 ffcd6d74201acd4ab507275bbe6789ec 334 PANTHER PTHR10859:SF99 20 214 7.6E-35 T 19-04-2016 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 SUPERFAMILY SSF50037 215 259 2.15E-6 T 19-04-2016 IPR008988 Transcriptional repressor, C-terminal AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 PANTHER PTHR12835 16 261 8.8E-55 T 19-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 SUPERFAMILY SSF55681 16 196 6.55E-44 T 19-04-2016 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 Gene3D G3DSA:3.30.930.10 16 196 6.0E-51 T 19-04-2016 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 Pfam PF02237 Biotin protein ligase C terminal domain 212 259 2.6E-6 T 19-04-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 Gene3D G3DSA:2.30.30.100 213 257 9.5E-7 T 19-04-2016 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 Pfam PF03099 Biotin/lipoate A/B protein ligase family 22 132 1.9E-10 T 19-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AMED_0973 8b2bd1d50129d8588e2d4768e184e181 263 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 18 259 2.0E-40 T 19-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 Gene3D G3DSA:3.40.50.20 8 115 8.4E-24 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 9 368 37.039 T 19-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 PANTHER PTHR11609 8 374 1.8E-115 T 19-04-2016 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 Pfam PF02222 ATP-grasp domain 117 286 5.5E-46 T 19-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 SUPERFAMILY SSF56059 106 306 7.42E-56 T 19-04-2016 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 10 372 2.0E-110 T 19-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 PANTHER PTHR11609:SF5 8 374 1.8E-115 T 19-04-2016 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 SUPERFAMILY SSF51246 312 389 5.26E-15 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 Gene3D G3DSA:3.30.470.20 159 387 1.2E-78 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 Gene3D G3DSA:3.30.1490.20 120 158 5.6E-5 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_0992 0de02c17301cfe9102f7d4c10da27a0f 394 SUPERFAMILY SSF52440 6 102 2.88E-20 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 SUPERFAMILY SSF56770 15 301 1.79E-64 T 19-04-2016 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 26 199 5.8E-25 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 179 202 6.0E-9 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 274 287 6.0E-9 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 128 142 6.0E-9 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 246 272 6.0E-9 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 PANTHER PTHR30013 17 302 1.1E-47 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 222 300 5.1E-25 T 19-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 Gene3D G3DSA:4.10.480.10 222 301 1.2E-27 T 19-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 Gene3D G3DSA:3.40.50.700 13 220 6.7E-44 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMED_3796 b34faf1bd845192212c8ce2c3e0c3441 353 PIRSF PIRSF000310 1 351 4.5E-91 T 19-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 Pfam PF00067 Cytochrome P450 7 421 6.6E-72 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 SUPERFAMILY SSF48264 3 441 7.2E-103 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 264 290 4.7E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 31 50 4.7E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 390 413 4.7E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 244 261 4.7E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 380 390 4.7E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00463 E-class P450 group I signature 345 369 4.7E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 381 390 1.8E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 390 401 1.8E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 307 318 1.8E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PRINTS PR00385 P450 superfamily signature 255 272 1.8E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 PANTHER PTHR24286 3 441 6.8E-89 T 19-04-2016 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 383 392 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4350 0f846bb28c7e161d3e8f203e957f89dd 443 Gene3D G3DSA:1.10.630.10 6 441 4.2E-108 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4933 7eee5e5cae1dbf76089220d1a86df68b 653 Gene3D G3DSA:1.10.357.10 182 265 6.3E-4 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4933 7eee5e5cae1dbf76089220d1a86df68b 653 SUPERFAMILY SSF53300 469 642 8.9E-17 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4933 7eee5e5cae1dbf76089220d1a86df68b 653 Gene3D G3DSA:3.40.50.410 469 617 1.6E-5 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4933 7eee5e5cae1dbf76089220d1a86df68b 653 SMART SM00327 467 649 3.0E-12 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_2343 8632f04734633ed86a4798834b56e125 348 PANTHER PTHR22942:SF1 7 337 7.1E-199 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 Gene3D G3DSA:3.30.250.10 270 328 7.2E-29 T 19-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal AMED_2343 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 299 316 1.1E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 212 240 1.1E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 95 124 1.1E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 129 158 1.1E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 167 196 1.1E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 PRINTS PR00142 RecA protein signature 245 274 1.1E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 Pfam PF00154 recA bacterial DNA recombination protein 9 270 3.2E-143 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 PANTHER PTHR22942 7 337 7.1E-199 T 19-04-2016 AMED_2343 8632f04734633ed86a4798834b56e125 348 SUPERFAMILY SSF52540 6 269 4.21E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2343 8632f04734633ed86a4798834b56e125 348 Gene3D G3DSA:3.40.50.300 29 269 1.9E-85 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2343 8632f04734633ed86a4798834b56e125 348 Hamap MF_00268 Protein RecA [recA]. 7 331 52.43 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 2.9E-173 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMED_2343 8632f04734633ed86a4798834b56e125 348 SMART SM00382 59 230 7.3E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2343 8632f04734633ed86a4798834b56e125 348 SUPERFAMILY SSF54752 270 328 9.68E-21 T 19-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal AMED_2343 8632f04734633ed86a4798834b56e125 348 ProSitePatterns PS00321 recA signature. 215 223 - T 19-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMED_4371 4f30aefe11d2822e7ecf7ae6b357f11b 725 PANTHER PTHR37809 314 603 1.3E-22 T 19-04-2016 AMED_4371 4f30aefe11d2822e7ecf7ae6b357f11b 725 PANTHER PTHR37809 624 723 1.3E-22 T 19-04-2016 AMED_4371 4f30aefe11d2822e7ecf7ae6b357f11b 725 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 339 682 1.4E-59 T 19-04-2016 IPR003776 YcaO-like domain AMED_4371 4f30aefe11d2822e7ecf7ae6b357f11b 725 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 338 723 1.7E-78 T 19-04-2016 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component AMED_0915 60cda198b28caa4f4ba630df418b1518 327 Gene3D G3DSA:3.40.50.300 56 260 6.7E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0915 60cda198b28caa4f4ba630df418b1518 327 Gene3D G3DSA:1.10.287.130 263 320 1.2E-4 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0915 60cda198b28caa4f4ba630df418b1518 327 SUPERFAMILY SSF52540 5 325 2.76E-93 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0915 60cda198b28caa4f4ba630df418b1518 327 PANTHER PTHR23408:SF17 3 325 4.7E-155 T 19-04-2016 AMED_0915 60cda198b28caa4f4ba630df418b1518 327 Gene3D G3DSA:1.20.5.170 3 55 2.6E-21 T 19-04-2016 AMED_0915 60cda198b28caa4f4ba630df418b1518 327 Pfam PF03308 ArgK protein 22 293 3.9E-110 T 19-04-2016 AMED_0915 60cda198b28caa4f4ba630df418b1518 327 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 17 322 1.6E-113 T 19-04-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 AMED_0915 60cda198b28caa4f4ba630df418b1518 327 PANTHER PTHR23408 3 325 4.7E-155 T 19-04-2016 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 PRINTS PR00400 Tetracycline repressor protein signature 35 58 3.5E-6 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 PRINTS PR00400 Tetracycline repressor protein signature 88 107 3.5E-6 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 PRINTS PR00400 Tetracycline repressor protein signature 203 217 3.5E-6 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 Gene3D G3DSA:1.10.10.60 8 72 2.6E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 SUPERFAMILY SSF48498 86 221 6.12E-21 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 81 220 6.0E-15 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 68 2.6E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 PANTHER PTHR30055:SF93 6 125 4.4E-31 T 19-04-2016 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 PANTHER PTHR30055 6 125 4.4E-31 T 19-04-2016 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 Gene3D G3DSA:1.10.357.10 73 221 4.8E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7425 eca6862ac3b77458cbd5ef07c98c443b 222 SUPERFAMILY SSF46689 12 77 3.9E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 SUPERFAMILY SSF51445 9 296 5.58E-81 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:3.40.50.1700 547 702 8.3E-63 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:3.40.50.1700 305 382 8.3E-63 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 42 283 7.0E-47 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 SMART SM01217 732 799 4.5E-21 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 Gene3D G3DSA:3.20.20.300 9 292 2.8E-87 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 Pfam PF14310 Fibronectin type III-like domain 732 798 7.8E-17 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PANTHER PTHR30620:SF18 1 377 8.2E-230 T 19-04-2016 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PANTHER PTHR30620:SF18 531 813 8.2E-230 T 19-04-2016 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 SUPERFAMILY SSF52279 316 383 1.26E-47 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 SUPERFAMILY SSF52279 547 702 1.26E-47 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 316 679 4.6E-51 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PANTHER PTHR30620 1 377 8.2E-230 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PANTHER PTHR30620 531 813 8.2E-230 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 70 89 1.8E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 216 234 1.8E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 41 57 1.8E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 147 163 1.8E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7267 e9865e78f122deb9375ff9f0ae9a532c 815 PRINTS PR00133 Glycosyl hydrolase family 3 signature 116 132 1.8E-27 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 SUPERFAMILY SSF55874 518 632 1.44E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 PANTHER PTHR24423 437 630 3.7E-20 T 19-04-2016 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 PANTHER PTHR24423 95 117 3.7E-20 T 19-04-2016 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Pfam PF00672 HAMP domain 324 404 1.1E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 SMART SM00304 339 409 9.9E-5 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Pfam PF08376 Nitrate and nitrite sensing 71 301 1.1E-21 T 19-04-2016 IPR013587 Nitrate/nitrite sensing protein AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 SMART SM00387 521 633 6.4E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 PANTHER PTHR24423:SF468 437 630 3.7E-20 T 19-04-2016 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 PANTHER PTHR24423:SF468 95 117 3.7E-20 T 19-04-2016 AMED_8924 7cddb8d9c971ed2d4bb6e734938a5b2e 936 Gene3D G3DSA:3.30.565.10 523 631 3.7E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4863 e433cdbf1d1ba63d6138280e5998ff27 117 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 109 5.9E-7 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_4863 e433cdbf1d1ba63d6138280e5998ff27 117 PANTHER PTHR33993 12 116 3.8E-12 T 19-04-2016 AMED_4863 e433cdbf1d1ba63d6138280e5998ff27 117 Gene3D G3DSA:3.10.180.10 11 114 1.6E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4863 e433cdbf1d1ba63d6138280e5998ff27 117 SUPERFAMILY SSF54593 3 115 6.46E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 SUPERFAMILY SSF48498 79 169 2.35E-10 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 1.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 PANTHER PTHR30055 9 160 3.0E-19 T 19-04-2016 AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.9E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.9E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 PANTHER PTHR30055:SF47 9 160 3.0E-19 T 19-04-2016 AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 Gene3D G3DSA:1.10.357.10 6 170 3.3E-26 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2943 1b821ced824ce109fc3fc387e428b8a0 189 SUPERFAMILY SSF46689 6 84 3.39E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6081 0ef7048631e8b90a03815cfc25a1037d 181 Gene3D G3DSA:2.60.40.10 21 85 8.0E-4 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_6081 0ef7048631e8b90a03815cfc25a1037d 181 SUPERFAMILY SSF49265 20 85 8.86E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1403 44c719990772e344ddcb785164458013 600 SUPERFAMILY SSF48208 188 586 3.52E-108 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1403 44c719990772e344ddcb785164458013 600 PANTHER PTHR31616 3 598 2.0E-187 T 19-04-2016 AMED_1403 44c719990772e344ddcb785164458013 600 Gene3D G3DSA:1.50.10.10 210 588 2.0E-87 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_1403 44c719990772e344ddcb785164458013 600 PANTHER PTHR31616:SF0 3 598 2.0E-187 T 19-04-2016 AMED_1403 44c719990772e344ddcb785164458013 600 Pfam PF00723 Glycosyl hydrolases family 15 216 581 2.0E-62 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_6321 87ebb7aa8e6d85878982321e3b2cb139 157 Gene3D G3DSA:1.10.260.40 22 60 4.1E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6321 87ebb7aa8e6d85878982321e3b2cb139 157 SUPERFAMILY SSF47413 21 62 3.56E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 PANTHER PTHR35569 4 202 9.6E-30 T 19-04-2016 AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 Gene3D G3DSA:1.10.3210.10 19 118 1.4E-7 T 19-04-2016 IPR006674 HD domain AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 PANTHER PTHR35569:SF1 4 202 9.6E-30 T 19-04-2016 AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 SUPERFAMILY SSF54427 219 326 2.54E-16 T 19-04-2016 IPR032710 NTF2-like domain AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 Pfam PF01966 HD domain 37 118 1.6E-5 T 19-04-2016 IPR006674 HD domain AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 SUPERFAMILY SSF109604 6 119 2.54E-13 T 19-04-2016 AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 Gene3D G3DSA:3.10.450.50 216 321 8.7E-16 T 19-04-2016 IPR032710 NTF2-like domain AMED_6520 c3f16260f76f8f56cd7b861702b133ff 338 Pfam PF12680 SnoaL-like domain 225 321 1.8E-7 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PANTHER PTHR10992 49 271 7.9E-30 T 19-04-2016 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PANTHER PTHR10992 15 32 7.9E-30 T 19-04-2016 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 SMART SM00421 282 339 7.3E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 299 315 1.2E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 315 327 1.2E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 285 299 1.2E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 Pfam PF12146 Serine aminopeptidase, S33 59 239 1.6E-10 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 SUPERFAMILY SSF53474 15 269 1.88E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 Gene3D G3DSA:1.10.10.10 281 344 2.5E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 Pfam PF00196 Bacterial regulatory proteins, luxR family 284 339 1.2E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 SUPERFAMILY SSF46894 280 344 2.21E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 215 229 5.4E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 5.4E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 5.4E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 5.4E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3774 174bfd5ef3d382ddc1f1a1d2193e7936 345 Gene3D G3DSA:3.40.50.1820 15 270 1.8E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 74 300 4.1E-58 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 SMART SM00062 71 303 5.7E-41 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 Gene3D G3DSA:3.40.190.10 73 149 1.3E-31 T 19-04-2016 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 Gene3D G3DSA:3.40.190.10 262 301 1.3E-31 T 19-04-2016 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 SUPERFAMILY SSF53850 11 23 6.84E-51 T 19-04-2016 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 SUPERFAMILY SSF53850 61 300 6.84E-51 T 19-04-2016 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 PANTHER PTHR18966:SF191 56 299 4.3E-38 T 19-04-2016 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 PANTHER PTHR18966 56 299 4.3E-38 T 19-04-2016 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 95 108 - T 19-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AMED_1500 d74bf761b0c1ad7b1531146d921a133a 315 Gene3D G3DSA:3.40.190.10 150 255 1.5E-18 T 19-04-2016 AMED_1555 34efdec63c9dfa4495cff2f63155a97d 364 PANTHER PTHR38479 1 364 3.0E-76 T 19-04-2016 AMED_1555 34efdec63c9dfa4495cff2f63155a97d 364 Pfam PF06224 Winged helix DNA-binding domain 31 348 2.0E-75 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_1555 34efdec63c9dfa4495cff2f63155a97d 364 PANTHER PTHR38479:SF2 1 364 3.0E-76 T 19-04-2016 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 SUPERFAMILY SSF46689 12 87 2.43E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 Gene3D G3DSA:1.10.357.10 12 199 2.4E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 5.3E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 5.3E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 SUPERFAMILY SSF48498 91 196 4.77E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 PANTHER PTHR30055:SF19 8 201 1.4E-33 T 19-04-2016 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 PANTHER PTHR30055 8 201 1.4E-33 T 19-04-2016 AMED_4680 dd07e99a07fe7bf926a1d524bf4ebf91 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 69 1.1E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0023 5a4d2b6578e1bfa9cc985d11af037f9f 393 PANTHER PTHR37539 14 349 2.0E-84 T 19-04-2016 AMED_0023 5a4d2b6578e1bfa9cc985d11af037f9f 393 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 99 327 3.5E-27 T 19-04-2016 IPR018713 Domain of unknown function DUF2236 AMED_0023 5a4d2b6578e1bfa9cc985d11af037f9f 393 PANTHER PTHR37539:SF2 14 349 2.0E-84 T 19-04-2016 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 SUPERFAMILY SSF48264 11 399 1.07E-88 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 Pfam PF00067 Cytochrome P450 278 368 1.1E-16 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 Pfam PF00067 Cytochrome P450 87 264 1.2E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 243 260 5.7E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 278 289 5.7E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 353 364 5.7E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00385 P450 superfamily signature 344 353 5.7E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 Gene3D G3DSA:1.10.630.10 10 400 4.7E-113 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PANTHER PTHR11712 10 400 1.4E-89 T 19-04-2016 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 278 289 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 353 364 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 91 102 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 135 151 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 323 338 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 152 167 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 295 322 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 197 219 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7987 921cc99b0883a5e2f507c3e8c26f1ce4 403 PRINTS PR00359 B-class P450 signature 344 353 7.6E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 SUPERFAMILY SSF47413 4 59 3.22E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 SUPERFAMILY SSF48239 108 309 6.87E-10 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Pfam PF13560 Helix-turn-helix domain 6 62 1.7E-10 T 19-04-2016 AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Gene3D G3DSA:1.50.10.20 104 203 6.6E-8 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Gene3D G3DSA:1.50.10.20 247 362 6.6E-8 T 19-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 Gene3D G3DSA:1.10.260.40 5 58 2.2E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6753 c3f2534ed512b67bb11d8c2cbdcab8f3 405 SMART SM00530 9 64 2.2E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 1.5E-70 T 19-04-2016 AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PANTHER PTHR24322:SF330 12 137 1.7E-60 T 19-04-2016 AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PANTHER PTHR24322:SF330 154 186 1.7E-60 T 19-04-2016 AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PANTHER PTHR24322 12 137 1.7E-60 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PANTHER PTHR24322 154 186 1.7E-60 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 SUPERFAMILY SSF51735 6 247 1.17E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 5.3E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.3E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.3E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.3E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1810 4844857e426fbc1f2621ff2c3dcec59b 255 Gene3D G3DSA:3.40.50.720 2 248 4.4E-86 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PANTHER PTHR13789 1 438 1.5E-89 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 SUPERFAMILY SSF51905 3 191 5.77E-60 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 SUPERFAMILY SSF51905 278 369 5.77E-60 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 Pfam PF01494 FAD binding domain 4 356 8.4E-70 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 Gene3D G3DSA:3.50.50.60 117 196 2.3E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 Gene3D G3DSA:3.50.50.60 279 363 2.3E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 Gene3D G3DSA:3.50.50.60 2 68 2.3E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 170 185 5.7E-42 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 324 342 5.7E-42 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 306 322 5.7E-42 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 5.7E-42 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 306 5.7E-42 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 358 5.7E-42 T 19-04-2016 AMED_4222 310d7c8edc5348f0ebafbf294ab24475 504 PANTHER PTHR13789:SF90 1 438 1.5E-89 T 19-04-2016 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 Gene3D G3DSA:3.30.470.10 2 149 3.8E-65 T 19-04-2016 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 Pfam PF01063 Amino-transferase class IV 44 290 1.4E-32 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 SUPERFAMILY SSF56752 2 332 7.19E-111 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 18 333 1.3E-131 T 19-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 PANTHER PTHR11825:SF2 1 334 1.9E-136 T 19-04-2016 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 Gene3D G3DSA:3.20.10.10 150 321 5.6E-68 T 19-04-2016 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 PANTHER PTHR11825 1 334 1.9E-136 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 PIRSF PIRSF006468 1 336 8.2E-128 T 19-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 AMED_2179 d5d0644eb5308d63122eebd5f3caa0b4 336 ProSitePatterns PS00770 Aminotransferases class-IV signature. 208 241 - T 19-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 AMED_3857 514ed98c25acd8805a6162f9edf517c2 140 PANTHER PTHR12418:SF16 31 132 5.3E-14 T 19-04-2016 AMED_3857 514ed98c25acd8805a6162f9edf517c2 140 SUPERFAMILY SSF54637 15 118 2.08E-25 T 19-04-2016 IPR029069 HotDog domain AMED_3857 514ed98c25acd8805a6162f9edf517c2 140 Pfam PF03061 Thioesterase superfamily 36 103 2.2E-10 T 19-04-2016 IPR006683 Thioesterase domain AMED_3857 514ed98c25acd8805a6162f9edf517c2 140 Gene3D G3DSA:3.10.129.10 16 122 6.4E-26 T 19-04-2016 IPR029069 HotDog domain AMED_3857 514ed98c25acd8805a6162f9edf517c2 140 PANTHER PTHR12418 31 132 5.3E-14 T 19-04-2016 AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 Pfam PF01163 RIO1 family 138 299 8.9E-32 T 19-04-2016 AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 SMART SM00090 62 315 2.8E-9 T 19-04-2016 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 PANTHER PTHR10593 98 293 2.5E-23 T 19-04-2016 AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 Gene3D G3DSA:3.30.200.20 98 205 6.5E-5 T 19-04-2016 AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 Gene3D G3DSA:1.10.510.10 221 297 9.9E-15 T 19-04-2016 AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 SUPERFAMILY SSF56112 95 289 5.4E-16 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2059 16f6901e143a73cecf1e5c4456e8b335 319 PANTHER PTHR10593:SF19 98 293 2.5E-23 T 19-04-2016 AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 Pfam PF13732 Domain of unknown function (DUF4162) 207 297 6.4E-8 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 PANTHER PTHR24220 1 240 9.8E-96 T 19-04-2016 AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 SMART SM00382 19 202 3.9E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 TIGRFAM TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein 2 299 1.8E-108 T 19-04-2016 IPR005894 Daunorubicin resistance ABC transporter ATP-binding subunit DrrA GO:0005524|GO:0043215|GO:1900753 KEGG: 00920+3.6.3.- AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 Gene3D G3DSA:3.40.50.300 2 220 1.2E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 SUPERFAMILY SSF52540 2 215 2.0E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 Pfam PF00005 ABC transporter 10 153 1.1E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 PANTHER PTHR24220:SF0 1 240 9.8E-96 T 19-04-2016 AMED_5929 e3b8206caa795db9491955cb2c0393fb 310 ProSitePatterns PS00211 ABC transporters family signature. 126 140 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 PANTHER PTHR30348 2 137 6.0E-112 T 19-04-2016 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 Pfam PF01904 Protein of unknown function DUF72 24 271 4.4E-68 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 PANTHER PTHR30348:SF7 163 274 6.0E-112 T 19-04-2016 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 PANTHER PTHR30348:SF7 2 137 6.0E-112 T 19-04-2016 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 Gene3D G3DSA:3.20.20.410 4 274 4.8E-89 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 SUPERFAMILY SSF117396 162 274 2.35E-80 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 SUPERFAMILY SSF117396 6 135 2.35E-80 T 19-04-2016 IPR002763 Protein of unknown function DUF72 AMED_8550 4483361e2a84d1ed5fe644794c3098cf 281 PANTHER PTHR30348 163 274 6.0E-112 T 19-04-2016 AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 PANTHER PTHR10000 68 248 5.9E-90 T 19-04-2016 AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 20 221 4.0E-54 T 19-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 SUPERFAMILY SSF56784 20 238 3.25E-28 T 19-04-2016 IPR023214 HAD-like domain AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 PANTHER PTHR10000:SF30 68 248 5.9E-90 T 19-04-2016 AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 20 210 5.8E-18 T 19-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 Gene3D G3DSA:3.40.50.1000 93 238 5.7E-47 T 19-04-2016 IPR023214 HAD-like domain AMED_0473 6a5b7d7457cf98b5b8f8e4f738aa3d90 269 Pfam PF12710 haloacid dehalogenase-like hydrolase 21 207 1.2E-25 T 19-04-2016 AMED_4071 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 Pfam PF01209 ubiE/COQ5 methyltransferase family 46 222 8.3E-21 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMED_4071 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 PANTHER PTHR10108 203 224 2.4E-27 T 19-04-2016 AMED_4071 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 PANTHER PTHR10108 18 180 2.4E-27 T 19-04-2016 AMED_4071 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 Gene3D G3DSA:3.40.50.150 14 221 3.6E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4071 b6626632e5cb4c2b0b7ba8b3f0a721c0 243 SUPERFAMILY SSF53335 14 226 1.86E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0557 d7b12eec233f5bb702af0c9be10d4923 215 Pfam PF01569 PAP2 superfamily 122 207 5.8E-10 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_0557 d7b12eec233f5bb702af0c9be10d4923 215 Gene3D G3DSA:1.20.144.10 41 210 7.8E-18 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_0557 d7b12eec233f5bb702af0c9be10d4923 215 SUPERFAMILY SSF48317 21 213 2.88E-24 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_0557 d7b12eec233f5bb702af0c9be10d4923 215 SMART SM00014 98 204 0.004 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 PANTHER PTHR30055:SF33 7 205 9.1E-52 T 19-04-2016 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 Gene3D G3DSA:1.10.10.60 17 68 3.7E-22 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 69 1.8E-19 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 ProSitePatterns PS01081 TetR-type HTH domain signature. 36 67 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 SUPERFAMILY SSF48498 92 205 8.9E-20 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 SUPERFAMILY SSF46689 17 96 5.13E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 Gene3D G3DSA:1.10.357.10 69 205 3.1E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 PANTHER PTHR30055 7 205 9.1E-52 T 19-04-2016 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 1.1E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3135 439a45dd01e14fcab1b211f05f996e03 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 1.1E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.3E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 SUPERFAMILY SSF51735 1 236 9.54E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 Gene3D G3DSA:3.40.50.720 1 236 2.6E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1 176 0.0076 T 19-04-2016 AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 22 39 9.5E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 9.5E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 9.5E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 9.5E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 9.5E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 9.5E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 5 233 4.7E-58 T 19-04-2016 AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PANTHER PTHR24322 1 129 1.7E-57 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2025 ea0cf28062fefc20366fae9b57bd943d 237 PANTHER PTHR24322 145 177 1.7E-57 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9219 9d4daf844401747834e74ac31275344b 196 Gene3D G3DSA:1.10.357.10 4 192 1.3E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9219 9d4daf844401747834e74ac31275344b 196 SUPERFAMILY SSF46689 4 61 6.16E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9219 9d4daf844401747834e74ac31275344b 196 PANTHER PTHR30055 4 186 1.3E-12 T 19-04-2016 AMED_9219 9d4daf844401747834e74ac31275344b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 2.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9219 9d4daf844401747834e74ac31275344b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 2.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9219 9d4daf844401747834e74ac31275344b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 5.6E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4326 deb2a8e8306827106e4543d543d9f40f 389 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 106 318 3.6E-46 T 19-04-2016 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 AMED_4326 deb2a8e8306827106e4543d543d9f40f 389 Gene3D G3DSA:1.10.620.20 5 388 2.2E-140 T 19-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 AMED_4326 deb2a8e8306827106e4543d543d9f40f 389 SUPERFAMILY SSF47240 27 380 2.03E-83 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_6566 a63a7021ee86a42b95a131625c486a41 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_6566 a63a7021ee86a42b95a131625c486a41 486 PANTHER PTHR11699:SF167 10 480 2.6E-187 T 19-04-2016 AMED_6566 a63a7021ee86a42b95a131625c486a41 486 SUPERFAMILY SSF53720 14 478 3.53E-146 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_6566 a63a7021ee86a42b95a131625c486a41 486 Pfam PF00171 Aldehyde dehydrogenase family 25 475 7.4E-152 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_6566 a63a7021ee86a42b95a131625c486a41 486 PANTHER PTHR11699 10 480 2.6E-187 T 19-04-2016 AMED_6566 a63a7021ee86a42b95a131625c486a41 486 Gene3D G3DSA:3.40.309.10 268 450 2.7E-63 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_6566 a63a7021ee86a42b95a131625c486a41 486 Gene3D G3DSA:3.40.605.10 15 267 7.2E-80 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 Pfam PF13602 Zinc-binding dehydrogenase 187 313 3.2E-25 T 19-04-2016 AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 Gene3D G3DSA:3.40.50.720 150 279 6.8E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 SUPERFAMILY SSF50129 4 152 4.41E-29 T 19-04-2016 IPR011032 GroES-like AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 SMART SM00829 6 313 4.0E-10 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 PANTHER PTHR11695:SF294 11 317 6.6E-68 T 19-04-2016 AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 SUPERFAMILY SSF51735 118 290 1.12E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 Gene3D G3DSA:3.90.180.10 3 149 6.9E-35 T 19-04-2016 IPR011032 GroES-like AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 91 7.7E-9 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_7806 772ae291176de46a0fe83c5ddb7ff209 319 PANTHER PTHR11695 11 317 6.6E-68 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3592 e400c7609acaba8ca90d642c19956323 345 PANTHER PTHR24421 4 204 8.9E-30 T 19-04-2016 AMED_3592 e400c7609acaba8ca90d642c19956323 345 Pfam PF01339 CheB methylesterase 8 180 4.4E-50 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_3592 e400c7609acaba8ca90d642c19956323 345 Gene3D G3DSA:3.40.50.180 5 189 2.6E-56 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_3592 e400c7609acaba8ca90d642c19956323 345 PANTHER PTHR24421:SF16 4 204 8.9E-30 T 19-04-2016 AMED_3592 e400c7609acaba8ca90d642c19956323 345 SUPERFAMILY SSF52738 5 187 4.71E-49 T 19-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 Gene3D G3DSA:3.40.190.10 115 211 4.9E-22 T 19-04-2016 AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 SMART SM00062 35 261 0.0036 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 37 317 1.9E-57 T 19-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 PANTHER PTHR30024:SF3 27 317 1.7E-71 T 19-04-2016 AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 SUPERFAMILY SSF53850 33 255 2.52E-40 T 19-04-2016 AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 PANTHER PTHR30024 27 317 1.7E-71 T 19-04-2016 AMED_5022 1eac51cc0e9caf2013db7b415e801663 328 Pfam PF09084 NMT1/THI5 like 94 189 5.7E-8 T 19-04-2016 IPR015168 SsuA/THI5-like AMED_1707 5c9085537edbdc4f1812fa2c06610900 485 SUPERFAMILY SSF51905 303 375 1.01E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1707 5c9085537edbdc4f1812fa2c06610900 485 SUPERFAMILY SSF51905 5 194 1.01E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1707 5c9085537edbdc4f1812fa2c06610900 485 Gene3D G3DSA:3.50.50.60 304 347 8.2E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1707 5c9085537edbdc4f1812fa2c06610900 485 Gene3D G3DSA:3.50.50.60 7 189 8.2E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1707 5c9085537edbdc4f1812fa2c06610900 485 PANTHER PTHR10617 6 471 5.6E-65 T 19-04-2016 AMED_1707 5c9085537edbdc4f1812fa2c06610900 485 PANTHER PTHR10617:SF114 6 471 5.6E-65 T 19-04-2016 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 Pfam PF00817 impB/mucB/samB family 7 150 3.9E-38 T 19-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 SUPERFAMILY SSF56672 2 233 1.6E-68 T 19-04-2016 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:3.30.1490.100 241 335 5.3E-22 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:3.30.70.270 68 159 2.9E-18 T 19-04-2016 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 Pfam PF11799 impB/mucB/samB family C-terminal domain 240 335 8.5E-12 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 Gene3D G3DSA:1.10.150.20 162 235 2.2E-19 T 19-04-2016 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 SUPERFAMILY SSF100879 238 335 5.69E-21 T 19-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 Hamap MF_01113 DNA polymerase IV [dinB]. 1 339 28.581 T 19-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_5259 12795ccc67231f47d2aeb927cd2ad2de 341 PANTHER PTHR11076 4 335 6.7E-106 T 19-04-2016 AMED_3585 e8986b2438f71a75be66ab9a44a09183 397 Pfam PF10282 Lactonase, 7-bladed beta-propeller 162 315 2.3E-4 T 19-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 AMED_3585 e8986b2438f71a75be66ab9a44a09183 397 SUPERFAMILY SSF50974 72 392 2.09E-59 T 19-04-2016 IPR011045 Nitrous oxide reductase, N-terminal AMED_3585 e8986b2438f71a75be66ab9a44a09183 397 Gene3D G3DSA:2.130.10.10 77 384 5.0E-48 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_5272 0577a4ecfa9b93eae418ad0db5ce360e 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 64 7.1E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5272 0577a4ecfa9b93eae418ad0db5ce360e 220 Gene3D G3DSA:1.10.10.60 12 62 1.0E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5272 0577a4ecfa9b93eae418ad0db5ce360e 220 PANTHER PTHR30055 4 197 2.3E-29 T 19-04-2016 AMED_5272 0577a4ecfa9b93eae418ad0db5ce360e 220 SUPERFAMILY SSF46689 12 85 6.98E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5272 0577a4ecfa9b93eae418ad0db5ce360e 220 Gene3D G3DSA:1.10.357.10 63 198 7.5E-21 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5272 0577a4ecfa9b93eae418ad0db5ce360e 220 PANTHER PTHR30055:SF81 4 197 2.3E-29 T 19-04-2016 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 PANTHER PTHR11552:SF51 2 511 1.6E-201 T 19-04-2016 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 247 261 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 Pfam PF00732 GMC oxidoreductase 2 288 6.5E-93 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 Pfam PF05199 GMC oxidoreductase 375 506 1.3E-35 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 SUPERFAMILY SSF51905 459 511 3.89E-89 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 SUPERFAMILY SSF51905 1 281 3.89E-89 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 PANTHER PTHR11552 2 511 1.6E-201 T 19-04-2016 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 PIRSF PIRSF000137 1 513 6.2E-147 T 19-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 78 101 - T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:3.50.50.60 2 119 1.5E-119 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:3.50.50.60 180 306 1.5E-119 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 Gene3D G3DSA:3.50.50.60 453 512 1.5E-119 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6841 42c3afeac3c67755a78e2503b1db013b 513 SUPERFAMILY SSF54373 283 460 4.22E-42 T 19-04-2016 AMED_9189 f1c0aa9871b3f0f4fcea5d0fbb4fb149 108 Pfam PF04237 YjbR 13 100 4.9E-14 T 19-04-2016 IPR007351 Uncharacterised protein YjbR AMED_9189 f1c0aa9871b3f0f4fcea5d0fbb4fb149 108 SUPERFAMILY SSF142906 1 106 1.18E-9 T 19-04-2016 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 Pfam PF00072 Response regulator receiver domain 5 116 4.2E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 Gene3D G3DSA:3.40.50.2300 3 151 1.8E-38 T 19-04-2016 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 SMART SM00448 3 116 1.3E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 3.0E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 SMART SM00421 149 206 9.4E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 Gene3D G3DSA:1.10.10.10 152 211 2.7E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 SUPERFAMILY SSF52172 3 183 1.36E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 PANTHER PTHR26402 3 211 1.7E-91 T 19-04-2016 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 PANTHER PTHR26402:SF564 3 211 1.7E-91 T 19-04-2016 AMED_2410 93bd73e16a7c29eb9a4db3be30df0818 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 616 39.286 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Gene3D G3DSA:3.40.50.10490 248 445 1.6E-70 T 19-04-2016 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Pfam PF01380 SIS domain 293 417 4.0E-33 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Pfam PF01380 SIS domain 465 594 1.0E-20 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Gene3D G3DSA:3.60.20.10 1 244 1.9E-70 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Gene3D G3DSA:3.40.50.10490 446 616 2.0E-60 T 19-04-2016 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 PANTHER PTHR10937 6 616 4.1E-303 T 19-04-2016 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 SUPERFAMILY SSF53697 249 616 1.76E-105 T 19-04-2016 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 PANTHER PTHR10937:SF0 6 616 4.1E-303 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 1 616 4.2E-241 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 Pfam PF13522 Glutamine amidotransferase domain 62 196 1.4E-20 T 19-04-2016 AMED_0736 dd82903a4d8c39563eb2ecc826971fcc 616 SUPERFAMILY SSF56235 1 239 6.35E-61 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_7736 b59a2c14f5c504c16917959bdd90b165 374 SUPERFAMILY SSF53649 42 371 1.87E-48 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_7736 b59a2c14f5c504c16917959bdd90b165 374 Gene3D G3DSA:3.40.720.10 16 306 5.8E-35 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_7736 b59a2c14f5c504c16917959bdd90b165 374 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 42 359 4.8E-31 T 19-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 SUPERFAMILY SSF102588 3 225 3.66E-40 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 PANTHER PTHR12993:SF13 3 78 4.2E-20 T 19-04-2016 AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 Gene3D G3DSA:3.40.50.10320 3 240 1.8E-45 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 PANTHER PTHR12993 94 260 4.2E-20 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 PANTHER PTHR12993 3 78 4.2E-20 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 Pfam PF02585 GlcNAc-PI de-N-acetylase 6 137 9.4E-20 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_4731 c2610bf1985f12e63db41dcc0ccc47dd 264 PANTHER PTHR12993:SF13 94 260 4.2E-20 T 19-04-2016 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 Pfam PF01008 Initiation factor 2 subunit family 62 319 3.6E-62 T 19-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 PANTHER PTHR10233 3 321 5.1E-124 T 19-04-2016 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 3 318 2.5E-112 T 19-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 PANTHER PTHR10233:SF6 3 321 5.1E-124 T 19-04-2016 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 SUPERFAMILY SSF100950 3 322 7.18E-101 T 19-04-2016 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 Gene3D G3DSA:1.20.120.420 3 143 4.4E-33 T 19-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 1 329 35.568 T 19-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 30 318 8.8E-90 T 19-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 AMED_7015 03c55be57f2f58cd253e9c000a195d99 329 Gene3D G3DSA:3.40.50.10470 144 321 3.2E-62 T 19-04-2016 AMED_1345 32d057f34a5048db64a153afa2fe2ea5 342 PANTHER PTHR30137 1 342 9.0E-112 T 19-04-2016 AMED_1345 32d057f34a5048db64a153afa2fe2ea5 342 Gene3D G3DSA:3.20.20.30 1 340 1.8E-87 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1345 32d057f34a5048db64a153afa2fe2ea5 342 PANTHER PTHR30137:SF8 1 342 9.0E-112 T 19-04-2016 AMED_1345 32d057f34a5048db64a153afa2fe2ea5 342 Pfam PF00296 Luciferase-like monooxygenase 1 307 1.4E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1345 32d057f34a5048db64a153afa2fe2ea5 342 SUPERFAMILY SSF51679 1 339 5.89E-74 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 SUPERFAMILY SSF49785 336 419 4.54E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 SUPERFAMILY SSF48208 774 1183 4.0E-42 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:2.60.120.260 45 154 4.0E-9 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 PANTHER PTHR33307 481 1184 9.6E-247 T 19-04-2016 AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 PANTHER PTHR33307 193 327 9.6E-247 T 19-04-2016 AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 SUPERFAMILY SSF49785 40 131 1.08E-11 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:2.60.120.260 666 760 3.8E-13 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 Gene3D G3DSA:2.60.120.260 345 445 7.5E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 498 666 4.8E-54 T 19-04-2016 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF05592 Bacterial alpha-L-rhamnosidase 676 1180 1.4E-170 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 Pfam PF13364 Beta-galactosidase jelly roll domain 47 127 5.1E-5 T 19-04-2016 IPR025300 Beta-galactosidase jelly roll domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 PANTHER PTHR33307:SF5 481 1184 9.6E-247 T 19-04-2016 AMED_5109 bf322e908cfde2d17c5a6684ec7dd49e 1215 PANTHER PTHR33307:SF5 193 327 9.6E-247 T 19-04-2016 AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 Gene3D G3DSA:1.10.10.10 8 75 2.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 Pfam PF07729 FCD domain 100 228 2.7E-20 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 SUPERFAMILY SSF46785 10 82 3.89E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 SMART SM00895 100 229 2.6E-21 T 19-04-2016 IPR011711 GntR, C-terminal AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.9E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.9E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 Gene3D G3DSA:1.20.120.530 97 236 1.6E-26 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 SUPERFAMILY SSF48008 98 236 3.4E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 SMART SM00345 14 75 2.7E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 7.1E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 PANTHER PTHR11751 12 82 1.4E-17 T 19-04-2016 AMED_3870 e2d8432e15013138edbf4aeb4322196c 248 PANTHER PTHR11751 98 117 1.4E-17 T 19-04-2016 AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 PANTHER PTHR10584:SF166 159 484 1.6E-29 T 19-04-2016 AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 Gene3D G3DSA:3.40.1190.20 175 484 2.3E-52 T 19-04-2016 IPR029056 Ribokinase-like AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 Pfam PF00294 pfkB family carbohydrate kinase 174 459 1.6E-23 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 SUPERFAMILY SSF53613 175 483 3.59E-39 T 19-04-2016 IPR029056 Ribokinase-like AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 PANTHER PTHR10584 159 484 1.6E-29 T 19-04-2016 AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 PRINTS PR00990 Ribokinase signature 178 199 9.5E-10 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 PRINTS PR00990 Ribokinase signature 205 224 9.5E-10 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_9092 f52c3231eab58fdd6a99268f58eeb5b8 490 PRINTS PR00990 Ribokinase signature 387 398 9.5E-10 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_5519 c521ec4160ff967dccdc173e1f74f62e 180 PANTHER PTHR11219 20 145 8.6E-23 T 19-04-2016 AMED_5519 c521ec4160ff967dccdc173e1f74f62e 180 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 67 145 1.9E-17 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_7442 06c2d132cb95a9420962c64d2c9affbb 284 PANTHER PTHR30011 14 236 3.5E-48 T 19-04-2016 AMED_7442 06c2d132cb95a9420962c64d2c9affbb 284 SUPERFAMILY SSF51679 1 281 2.36E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7442 06c2d132cb95a9420962c64d2c9affbb 284 PANTHER PTHR30011:SF24 14 236 3.5E-48 T 19-04-2016 AMED_7442 06c2d132cb95a9420962c64d2c9affbb 284 Pfam PF00296 Luciferase-like monooxygenase 10 238 3.4E-38 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7442 06c2d132cb95a9420962c64d2c9affbb 284 Gene3D G3DSA:3.20.20.30 10 281 2.7E-59 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1933 7517b112ca67fa09b64b47bb323672a0 158 Gene3D G3DSA:3.40.50.720 9 136 2.2E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1933 7517b112ca67fa09b64b47bb323672a0 158 Pfam PF13380 CoA binding domain 18 133 1.9E-33 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_1933 7517b112ca67fa09b64b47bb323672a0 158 PANTHER PTHR33303 9 140 5.8E-37 T 19-04-2016 AMED_1933 7517b112ca67fa09b64b47bb323672a0 158 SUPERFAMILY SSF51735 9 135 2.59E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1933 7517b112ca67fa09b64b47bb323672a0 158 SMART SM00881 13 107 8.0E-15 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_2316 a17dec3413581893c8d2d88be6add383 501 PANTHER PTHR13806:SF20 1 335 1.4E-56 T 19-04-2016 AMED_2316 a17dec3413581893c8d2d88be6add383 501 PANTHER PTHR13806:SF20 380 455 1.4E-56 T 19-04-2016 AMED_2316 a17dec3413581893c8d2d88be6add383 501 SUPERFAMILY SSF117892 69 206 5.49E-26 T 19-04-2016 IPR001107 Band 7 domain AMED_2316 a17dec3413581893c8d2d88be6add383 501 Pfam PF15975 Flotillin 378 479 2.6E-12 T 19-04-2016 IPR031905 Flotillin, C-terminal domain AMED_2316 a17dec3413581893c8d2d88be6add383 501 Pfam PF01145 SPFH domain / Band 7 family 31 217 3.6E-18 T 19-04-2016 IPR001107 Band 7 domain AMED_2316 a17dec3413581893c8d2d88be6add383 501 PANTHER PTHR13806 1 335 1.4E-56 T 19-04-2016 IPR027705 Flotillin family AMED_2316 a17dec3413581893c8d2d88be6add383 501 PANTHER PTHR13806 380 455 1.4E-56 T 19-04-2016 IPR027705 Flotillin family AMED_2316 a17dec3413581893c8d2d88be6add383 501 SMART SM00244 27 202 0.0021 T 19-04-2016 IPR001107 Band 7 domain AMED_7292 9633316070db1a1fa9f08a98e3532ff2 287 Pfam PF13814 Replication-relaxation 14 192 1.9E-21 T 19-04-2016 IPR025855 Plasmid replication-relaxation AMED_9341 9d9804843b31d9ae89a745fbbb9ba27b 747 SUPERFAMILY SSF101478 388 722 3.66E-24 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_9341 9d9804843b31d9ae89a745fbbb9ba27b 747 Pfam PF03747 ADP-ribosylglycohydrolase 392 704 5.3E-29 T 19-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 AMED_9341 9d9804843b31d9ae89a745fbbb9ba27b 747 Pfam PF15567 Immunity protein 35 4 100 5.6E-28 T 19-04-2016 IPR029082 Immunity protein 35 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 5 712 2.5E-234 T 19-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 ProSitePatterns PS00150 Acylphosphatase signature 1. 7 17 - T 19-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF07503 HypF finger 105 138 7.1E-18 T 19-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF07503 HypF finger 155 187 9.6E-16 T 19-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 PANTHER PTHR10029 2 718 0.0 T 19-04-2016 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 SUPERFAMILY SSF55821 173 381 2.04E-49 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 Gene3D G3DSA:3.30.70.100 2 86 2.0E-22 T 19-04-2016 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF01300 Telomere recombination 200 370 6.2E-50 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 PANTHER PTHR10029:SF4 2 718 0.0 T 19-04-2016 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 Gene3D G3DSA:3.90.870.10 195 366 9.2E-46 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 PIRSF PIRSF006256 1 718 7.4E-278 T 19-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 SUPERFAMILY SSF54975 2 87 1.66E-21 T 19-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMED_3784 3b25c0b88a118d7a2fde20cafbb10adc 718 Pfam PF00708 Acylphosphatase 2 86 9.8E-20 T 19-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMED_2710 0890122d7449e6f772e70f143ed7d995 281 PANTHER PTHR22981 1 277 2.1E-70 T 19-04-2016 AMED_2710 0890122d7449e6f772e70f143ed7d995 281 SUPERFAMILY SSF48179 156 277 4.53E-25 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_2710 0890122d7449e6f772e70f143ed7d995 281 Gene3D G3DSA:3.40.50.720 1 156 3.2E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2710 0890122d7449e6f772e70f143ed7d995 281 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 155 7.5E-35 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_2710 0890122d7449e6f772e70f143ed7d995 281 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 158 276 4.5E-15 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_2710 0890122d7449e6f772e70f143ed7d995 281 SUPERFAMILY SSF51735 1 156 8.78E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2710 0890122d7449e6f772e70f143ed7d995 281 PIRSF PIRSF000103 1 281 1.7E-72 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_2710 0890122d7449e6f772e70f143ed7d995 281 Gene3D G3DSA:1.10.1040.10 158 278 1.1E-28 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 PANTHER PTHR21021:SF19 66 407 6.8E-57 T 19-04-2016 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SMART SM00065 26 171 3.8E-15 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SMART SM00331 188 400 9.1E-29 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Gene3D G3DSA:3.30.450.40 7 169 5.0E-30 T 19-04-2016 IPR029016 GAF domain-like AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SUPERFAMILY SSF81606 193 400 2.88E-7 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 216 400 1.6E-41 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 PANTHER PTHR21021 66 407 6.8E-57 T 19-04-2016 AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 SUPERFAMILY SSF55781 8 163 2.09E-26 T 19-04-2016 IPR029016 GAF domain-like AMED_5886 c9b1e9a3f10d1bef3d37a1d6864367d1 407 Pfam PF13185 GAF domain 26 162 2.9E-17 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 Gene3D G3DSA:3.40.50.880 1 203 1.1E-74 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 PANTHER PTHR21235:SF1 1 202 9.4E-82 T 19-04-2016 AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 SUPERFAMILY SSF52317 1 202 2.44E-53 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 204 29.31 T 19-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 Pfam PF00117 Glutamine amidotransferase class-I 3 201 2.0E-18 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 PIRSF PIRSF000495 1 205 1.5E-62 T 19-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 PANTHER PTHR21235 1 202 9.4E-82 T 19-04-2016 AMED_2269 00e2f2daa82d7ea3fa2d7d1a6c5930de 205 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 1 203 2.9E-63 T 19-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 PANTHER PTHR30349 71 398 2.4E-32 T 19-04-2016 AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 Pfam PF00589 Phage integrase family 180 367 1.3E-20 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 71 128 2.5E-7 T 19-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 Gene3D G3DSA:1.10.150.130 71 164 9.1E-16 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 PANTHER PTHR30349:SF20 71 398 2.4E-32 T 19-04-2016 AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 SUPERFAMILY SSF56349 71 367 6.18E-52 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_8785 b8a0ae749488f13375e5369208c9f73c 401 Gene3D G3DSA:1.10.443.10 180 367 6.7E-32 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 Pfam PF00155 Aminotransferase class I and II 125 413 6.5E-16 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 PANTHER PTHR11751 87 407 2.9E-115 T 19-04-2016 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 89 3.6E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 SUPERFAMILY SSF46785 23 98 9.37E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 SMART SM00345 30 89 1.9E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 PANTHER PTHR11751:SF394 87 407 2.9E-115 T 19-04-2016 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 63 9.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 63 79 9.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 Gene3D G3DSA:1.10.10.10 30 94 1.4E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 Gene3D G3DSA:3.40.640.10 149 355 3.1E-38 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7541 f825888cb7304b2fcadaf54451fb07ef 466 SUPERFAMILY SSF53383 84 463 1.33E-65 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 7.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 7.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 225 7.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 Pfam PF00106 short chain dehydrogenase 4 136 5.5E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 Gene3D G3DSA:3.40.50.720 3 250 2.1E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1936 c9ab4e2b927c649b0a4a47565191355f 283 SUPERFAMILY SSF51735 2 270 1.09E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1584 6a65f006fdfc98f9725dad8a2f58c9ed 535 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 44 453 2.2E-57 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1584 6a65f006fdfc98f9725dad8a2f58c9ed 535 PANTHER PTHR11819 13 524 1.0E-225 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1584 6a65f006fdfc98f9725dad8a2f58c9ed 535 Pfam PF00474 Sodium:solute symporter family 44 454 7.8E-93 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1584 6a65f006fdfc98f9725dad8a2f58c9ed 535 PANTHER PTHR11819:SF13 13 524 1.0E-225 T 19-04-2016 AMED_0640 86ffd1241809131c0fc60b7d3e06fee4 206 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 6 178 1.0E-97 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0640 86ffd1241809131c0fc60b7d3e06fee4 206 Gene3D G3DSA:2.60.120.10 1 190 3.2E-58 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_0640 86ffd1241809131c0fc60b7d3e06fee4 206 PANTHER PTHR21047 7 204 1.1E-44 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0640 86ffd1241809131c0fc60b7d3e06fee4 206 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 177 1.5E-50 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0640 86ffd1241809131c0fc60b7d3e06fee4 206 SUPERFAMILY SSF51182 1 195 1.33E-62 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 Gene3D G3DSA:2.40.40.20 1 119 2.2E-57 T 19-04-2016 AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 PANTHER PTHR21012:SF0 2 133 1.3E-71 T 19-04-2016 AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 130 76.713 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 114 5.0E-40 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 PANTHER PTHR21012 2 133 1.3E-71 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 SUPERFAMILY SSF50692 1 116 3.4E-50 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 1.9E-52 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_8737 51fb882c3d9457e1f7ffccf79c946f16 165 Pfam PF02261 Aspartate decarboxylase 1 114 4.4E-53 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_8437 825654968764ecaaafbe080b2e6f1499 277 SUPERFAMILY SSF56281 30 266 1.49E-27 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8437 825654968764ecaaafbe080b2e6f1499 277 Pfam PF00753 Metallo-beta-lactamase superfamily 33 229 1.2E-16 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8437 825654968764ecaaafbe080b2e6f1499 277 Gene3D G3DSA:3.60.15.10 1 266 4.0E-32 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8437 825654968764ecaaafbe080b2e6f1499 277 PANTHER PTHR23200:SF38 17 270 5.7E-72 T 19-04-2016 AMED_8437 825654968764ecaaafbe080b2e6f1499 277 SMART SM00849 32 263 3.2E-10 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8437 825654968764ecaaafbe080b2e6f1499 277 PANTHER PTHR23200 17 270 5.7E-72 T 19-04-2016 AMED_4600 0e7ca11240f14996b0ce81a1837beca8 301 Gene3D G3DSA:3.40.710.10 3 301 2.2E-112 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4600 0e7ca11240f14996b0ce81a1837beca8 301 SUPERFAMILY SSF56601 5 301 2.54E-100 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4600 0e7ca11240f14996b0ce81a1837beca8 301 TIGRFAM TIGR03814 Gln_ase: glutaminase A 7 301 2.7E-119 T 19-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 AMED_4600 0e7ca11240f14996b0ce81a1837beca8 301 Hamap MF_00313 Glutaminase [glsA]. 3 301 43.87 T 19-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 AMED_4600 0e7ca11240f14996b0ce81a1837beca8 301 PANTHER PTHR12544 5 301 3.3E-134 T 19-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 AMED_4600 0e7ca11240f14996b0ce81a1837beca8 301 Pfam PF04960 Glutaminase 21 301 8.6E-108 T 19-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 Gene3D G3DSA:3.90.230.10 3 252 2.0E-74 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 253 7.6E-79 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 SUPERFAMILY SSF55920 3 252 5.1E-73 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 73 86 2.0E-19 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 2.0E-19 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 2.0E-19 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 2.0E-19 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PANTHER PTHR10804 1 252 1.6E-98 T 19-04-2016 AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 Hamap MF_01974 Methionine aminopeptidase [map]. 2 254 35.626 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 Pfam PF00557 Metallopeptidase family M24 12 245 7.4E-41 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_7916 3c1dab78cbc7fa9aeb0820d33d8119f3 254 PANTHER PTHR10804:SF41 1 252 1.6E-98 T 19-04-2016 AMED_8927 962a8e57f416273614b3fcfe1ed97684 322 PANTHER PTHR30024:SF8 27 274 7.2E-76 T 19-04-2016 AMED_8927 962a8e57f416273614b3fcfe1ed97684 322 PANTHER PTHR30024 27 274 7.2E-76 T 19-04-2016 AMED_8927 962a8e57f416273614b3fcfe1ed97684 322 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 25 318 7.3E-66 T 19-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 AMED_8927 962a8e57f416273614b3fcfe1ed97684 322 Gene3D G3DSA:3.40.190.10 113 226 2.5E-24 T 19-04-2016 AMED_8927 962a8e57f416273614b3fcfe1ed97684 322 SUPERFAMILY SSF53850 23 244 8.32E-49 T 19-04-2016 AMED_8927 962a8e57f416273614b3fcfe1ed97684 322 Pfam PF13379 NMT1-like family 23 247 1.6E-25 T 19-04-2016 AMED_6772 3e6e13e0a2558edc0af737369abac108 305 PANTHER PTHR24220 8 222 2.7E-96 T 19-04-2016 AMED_6772 3e6e13e0a2558edc0af737369abac108 305 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6772 3e6e13e0a2558edc0af737369abac108 305 SUPERFAMILY SSF52540 6 222 1.45E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6772 3e6e13e0a2558edc0af737369abac108 305 Pfam PF00005 ABC transporter 22 161 2.9E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6772 3e6e13e0a2558edc0af737369abac108 305 Gene3D G3DSA:3.40.50.300 3 222 7.7E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6772 3e6e13e0a2558edc0af737369abac108 305 PANTHER PTHR24220:SF160 8 222 2.7E-96 T 19-04-2016 AMED_6772 3e6e13e0a2558edc0af737369abac108 305 SMART SM00382 31 218 7.0E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 Gene3D G3DSA:3.40.190.10 236 304 1.1E-31 T 19-04-2016 AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 Gene3D G3DSA:3.40.190.10 32 110 1.1E-31 T 19-04-2016 AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 Pfam PF16868 NMT1-like family 34 304 1.8E-48 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 SUPERFAMILY SSF53850 31 304 1.07E-57 T 19-04-2016 AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 10 306 5.2E-59 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 PANTHER PTHR30024:SF5 1 304 3.5E-40 T 19-04-2016 AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 Gene3D G3DSA:3.40.190.10 111 234 5.0E-26 T 19-04-2016 AMED_2366 ef18e8c1c82ca64d0afc315f1d63150b 308 PANTHER PTHR30024 1 304 3.5E-40 T 19-04-2016 AMED_2623 3eb78f910a165ec444930c054944f9d0 481 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 394 414 - T 19-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AMED_2623 3eb78f910a165ec444930c054944f9d0 481 Pfam PF00474 Sodium:solute symporter family 32 412 8.2E-38 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_2623 3eb78f910a165ec444930c054944f9d0 481 PANTHER PTHR11819 1 451 4.6E-134 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_2623 3eb78f910a165ec444930c054944f9d0 481 PANTHER PTHR11819:SF141 1 451 4.6E-134 T 19-04-2016 AMED_6133 308643402675cefba8e767603a61bb1d 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 3.3E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6133 308643402675cefba8e767603a61bb1d 190 PANTHER PTHR30328:SF24 4 186 9.0E-32 T 19-04-2016 AMED_6133 308643402675cefba8e767603a61bb1d 190 Gene3D G3DSA:1.10.357.10 5 185 8.4E-40 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6133 308643402675cefba8e767603a61bb1d 190 PANTHER PTHR30328 4 186 9.0E-32 T 19-04-2016 AMED_6133 308643402675cefba8e767603a61bb1d 190 SUPERFAMILY SSF46689 3 76 8.72E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6133 308643402675cefba8e767603a61bb1d 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 4.3E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6133 308643402675cefba8e767603a61bb1d 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 4.3E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6133 308643402675cefba8e767603a61bb1d 190 SUPERFAMILY SSF48498 75 187 8.26E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 420 50.384 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Pfam PF00464 Serine hydroxymethyltransferase 8 389 1.2E-160 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 PIRSF PIRSF000412 1 423 2.4E-156 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 19-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Gene3D G3DSA:3.40.640.10 37 283 4.9E-105 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 SUPERFAMILY SSF53383 4 420 8.16E-172 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 Gene3D G3DSA:3.90.1150.10 284 420 4.2E-45 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_1816 62461d1f7dc5f3013dfe1ce84c6e07e2 424 PANTHER PTHR11680 3 419 2.4E-241 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 4 131 8.0E-49 T 19-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 PANTHER PTHR34701 5 141 1.2E-54 T 19-04-2016 AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 5 139 8.4E-38 T 19-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 SUPERFAMILY SSF89447 3 137 6.5E-46 T 19-04-2016 AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 146 52.32 T 19-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 Pfam PF02381 MraZ protein, putative antitoxin-like 75 140 1.7E-20 T 19-04-2016 IPR020603 MraZ domain AMED_6261 d9938c9355ce1cb59dc951a48060c948 146 Pfam PF02381 MraZ protein, putative antitoxin-like 5 73 2.1E-20 T 19-04-2016 IPR020603 MraZ domain AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 SUPERFAMILY SSF88946 45 133 9.42E-22 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Gene3D G3DSA:1.10.1740.10 48 124 3.3E-23 T 19-04-2016 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Pfam PF04542 Sigma-70 region 2 54 122 2.8E-18 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 50 207 1.4E-24 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 PANTHER PTHR30173:SF17 25 208 5.8E-50 T 19-04-2016 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 SUPERFAMILY SSF88659 146 207 3.49E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Pfam PF04545 Sigma-70, region 4 157 206 1.0E-11 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 Gene3D G3DSA:1.10.10.10 152 208 2.3E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6079 b1e5bee5b8c5abd61edfb3d78ec7c3b6 217 PANTHER PTHR30173 25 208 5.8E-50 T 19-04-2016 AMED_7689 b2c4904311322e5079b4f047a4d97fc6 156 Gene3D G3DSA:1.10.260.40 6 75 7.4E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7689 b2c4904311322e5079b4f047a4d97fc6 156 SUPERFAMILY SSF47413 7 72 6.48E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7689 b2c4904311322e5079b4f047a4d97fc6 156 Pfam PF13560 Helix-turn-helix domain 12 74 2.1E-7 T 19-04-2016 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 ProSitePatterns PS00091 Thymidylate synthase active site. 128 156 - T 19-04-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 SUPERFAMILY SSF55831 3 265 2.09E-123 T 19-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 PANTHER PTHR11548 5 265 4.8E-184 T 19-04-2016 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 Gene3D G3DSA:3.30.572.10 4 265 2.0E-127 T 19-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 Pfam PF00303 Thymidylate synthase 5 265 1.9E-117 T 19-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 87 265 4.0E-89 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 5 88 4.8E-39 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 117 136 4.8E-48 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 161 187 4.8E-48 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 143 158 4.8E-48 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 44 65 4.8E-48 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 PRINTS PR00108 Thymidylate synthase family signature 199 216 4.8E-48 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_4107 a7edaba9b106948b5c66350be5a3fe29 265 Hamap MF_00008 Thymidylate synthase [thyA]. 3 265 43.916 T 19-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 AMED_6564 d173f662674ee61c2a3d093204856d21 145 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 97 4.4E-12 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_6564 d173f662674ee61c2a3d093204856d21 145 SUPERFAMILY SSF50475 9 142 1.87E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6564 d173f662674ee61c2a3d093204856d21 145 Gene3D G3DSA:2.30.110.10 13 140 1.7E-25 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6564 d173f662674ee61c2a3d093204856d21 145 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 17 133 2.7E-32 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_6564 d173f662674ee61c2a3d093204856d21 145 PANTHER PTHR35176 1 143 3.2E-14 T 19-04-2016 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:3.40.50.620 348 564 1.2E-138 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:3.40.50.620 16 203 1.2E-138 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 806 870 9.5E-16 T 19-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 478 496 2.3E-37 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 238 255 2.3E-37 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 46 57 2.3E-37 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 447 468 2.3E-37 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PRINTS PR00986 Valyl-tRNA synthetase signature 353 366 2.3E-37 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF50677 202 341 1.18E-53 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PANTHER PTHR11946 3 864 0.0 T 19-04-2016 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:1.10.730.10 570 744 4.4E-60 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:3.90.740.10 209 341 6.7E-45 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 53 64 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF46589 806 870 4.13E-13 T 19-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Gene3D G3DSA:1.10.287.380 799 870 8.9E-7 T 19-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 25 566 2.1E-190 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF52374 10 202 2.94E-136 T 19-04-2016 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF52374 348 577 2.94E-136 T 19-04-2016 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 TIGRFAM TIGR00422 valS: valine--tRNA ligase 14 851 0.0 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Hamap MF_02004 Valine--tRNA ligase [valS]. 12 871 15.027 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 SUPERFAMILY SSF47323 578 819 7.29E-57 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 PANTHER PTHR11946:SF5 3 864 0.0 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMED_6724 3e93e86a15559a06ee7910f185ecd2a8 873 Pfam PF08264 Anticodon-binding domain of tRNA 609 752 3.1E-41 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMED_0270 ae871fff47972031e4bc4b3a1115ceb7 213 SUPERFAMILY SSF55729 118 198 1.12E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0270 ae871fff47972031e4bc4b3a1115ceb7 213 Gene3D G3DSA:3.40.630.30 125 197 4.5E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8359 2f4718c0d6462732533ab01ab58969a2 140 PANTHER PTHR39428 9 140 4.9E-47 T 19-04-2016 AMED_8359 2f4718c0d6462732533ab01ab58969a2 140 PANTHER PTHR39428:SF1 9 140 4.9E-47 T 19-04-2016 AMED_8359 2f4718c0d6462732533ab01ab58969a2 140 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 27 139 9.5E-31 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_8359 2f4718c0d6462732533ab01ab58969a2 140 SUPERFAMILY SSF50475 28 118 3.54E-8 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8359 2f4718c0d6462732533ab01ab58969a2 140 Pfam PF04075 Domain of unknown function (DUF385) 14 139 3.2E-42 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_8359 2f4718c0d6462732533ab01ab58969a2 140 Gene3D G3DSA:2.30.110.10 32 120 2.9E-11 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 Pfam PF01926 50S ribosome-binding GTPase 162 289 5.7E-22 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 184 202 8.0E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 8.0E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 8.0E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 163 183 8.0E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 SUPERFAMILY SSF102741 363 434 1.44E-21 T 19-04-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 19-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 5 335 2.7E-123 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 SUPERFAMILY SSF52540 152 346 5.52E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 SUPERFAMILY SSF82051 5 158 2.88E-47 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PANTHER PTHR11702 464 482 9.7E-134 T 19-04-2016 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PANTHER PTHR11702 4 344 9.7E-134 T 19-04-2016 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PANTHER PTHR11702 421 434 9.7E-134 T 19-04-2016 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 Gene3D G3DSA:3.40.50.300 161 342 9.4E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 Pfam PF09269 Domain of unknown function (DUF1967) 362 432 1.2E-25 T 19-04-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 365 433 3.0E-26 T 19-04-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 Gene3D G3DSA:2.70.210.12 4 157 1.7E-49 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 Pfam PF01018 GTP1/OBG 5 158 6.7E-52 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PANTHER PTHR11702:SF3 464 482 9.7E-134 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PANTHER PTHR11702:SF3 4 344 9.7E-134 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 PANTHER PTHR11702:SF3 421 434 9.7E-134 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMED_6704 29e1edbaf16f09087dee123b5d3caa16 485 Hamap MF_01454 GTPase Obg [obg]. 4 336 44.307 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 PIRSF PIRSF037219 1 347 4.9E-147 T 19-04-2016 IPR017142 Nitric oxide synthase, oxygenase subunit GO:0004517|GO:0006809|GO:0020037 KEGG: 00220+1.14.13.165|KEGG: 00330+1.14.13.165 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 SUPERFAMILY SSF56512 7 335 1.05E-148 T 19-04-2016 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 ProSitePatterns PS60001 Nitric oxide synthase (NOS) signature. 50 57 - T 19-04-2016 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 PANTHER PTHR19384 167 330 1.3E-84 T 19-04-2016 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 PANTHER PTHR19384:SF76 167 330 1.3E-84 T 19-04-2016 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 Pfam PF02898 Nitric oxide synthase, oxygenase domain 6 335 1.6E-142 T 19-04-2016 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 Gene3D G3DSA:3.90.1230.10 181 291 6.1E-38 T 19-04-2016 AMED_4154 b30606a519746798a2cde411f40f7cd6 348 Gene3D G3DSA:3.90.340.10 7 119 7.0E-43 T 19-04-2016 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 AMED_2793 fa01dc3e98e4fc42c2b8c57182904dc8 261 Gene3D G3DSA:3.20.20.30 119 244 3.8E-13 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2793 fa01dc3e98e4fc42c2b8c57182904dc8 261 Gene3D G3DSA:3.20.20.30 2 110 4.2E-6 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2793 fa01dc3e98e4fc42c2b8c57182904dc8 261 Pfam PF00296 Luciferase-like monooxygenase 118 240 6.0E-5 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2793 fa01dc3e98e4fc42c2b8c57182904dc8 261 SUPERFAMILY SSF51679 2 256 1.38E-24 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2793 fa01dc3e98e4fc42c2b8c57182904dc8 261 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 14 258 4.4E-80 T 19-04-2016 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 160 176 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 252 2.2E-50 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 SUPERFAMILY SSF53901 3 257 9.69E-63 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 260 374 3.5E-33 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 Gene3D G3DSA:3.40.47.10 5 262 1.1E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 PANTHER PTHR11712 6 116 6.0E-128 T 19-04-2016 AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 PANTHER PTHR11712 135 416 6.0E-128 T 19-04-2016 AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 SUPERFAMILY SSF53901 220 417 1.65E-63 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 Gene3D G3DSA:3.40.47.10 270 416 6.4E-51 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5435 d1d574ae79b13b908fd49ffa644c0795 419 SMART SM00825 Beta-ketoacyl synthase 5 408 2.3E-13 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00862 25 99 4.8E-8 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF00931 NB-ARC domain 310 495 6.0E-17 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF52540 273 542 6.88E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 99 6.7E-10 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.10.10.10 31 102 8.6E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF48452 725 928 4.67E-22 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF46894 12 99 2.38E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM01043 106 250 4.7E-47 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.25.40.10 114 224 8.4E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF13424 Tetratricopeptide repeat 897 951 1.1E-7 T 19-04-2016 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:1.25.40.10 727 944 1.9E-19 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 PANTHER PTHR22845 151 631 6.4E-86 T 19-04-2016 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Pfam PF03704 Bacterial transcriptional activator domain 106 250 8.7E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 PRINTS PR00364 Disease resistance protein signature 313 328 2.3E-10 T 19-04-2016 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 PRINTS PR00364 Disease resistance protein signature 391 405 2.3E-10 T 19-04-2016 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 PRINTS PR00364 Disease resistance protein signature 476 490 2.3E-10 T 19-04-2016 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00382 310 463 2.2E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 815 848 72.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 735 768 280.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 895 928 0.56 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 855 888 150.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SMART SM00028 111 144 360.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 SUPERFAMILY SSF48452 101 273 8.67E-38 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 Gene3D G3DSA:3.40.50.300 313 348 2.5E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4807 611fd35bef8af7dd564f633b2aa5c39f 979 PANTHER PTHR22845:SF4 151 631 6.4E-86 T 19-04-2016 AMED_0869 7fd014fa48e4d7423f316b3181eafc6c 326 PANTHER PTHR34294 15 323 1.4E-66 T 19-04-2016 AMED_0869 7fd014fa48e4d7423f316b3181eafc6c 326 Pfam PF04198 Putative sugar-binding domain 70 317 1.3E-46 T 19-04-2016 IPR007324 Sugar-binding domain, putative GO:0030246 AMED_0869 7fd014fa48e4d7423f316b3181eafc6c 326 SUPERFAMILY SSF100950 71 317 3.93E-47 T 19-04-2016 AMED_0869 7fd014fa48e4d7423f316b3181eafc6c 326 Gene3D G3DSA:3.40.50.1360 70 320 2.4E-52 T 19-04-2016 AMED_0157 bb85645947a90b4b273d83ecefb924fc 390 Gene3D G3DSA:2.60.120.10 225 362 4.7E-37 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_0157 bb85645947a90b4b273d83ecefb924fc 390 SUPERFAMILY SSF51182 6 384 9.88E-93 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_0157 bb85645947a90b4b273d83ecefb924fc 390 PANTHER PTHR11056 8 383 1.1E-58 T 19-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 AMED_0157 bb85645947a90b4b273d83ecefb924fc 390 Gene3D G3DSA:2.60.120.10 94 174 1.7E-11 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_0157 bb85645947a90b4b273d83ecefb924fc 390 Pfam PF04209 homogentisate 1,2-dioxygenase 114 371 6.3E-16 T 19-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 PANTHER PTHR19370 14 19 4.5E-20 T 19-04-2016 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 PANTHER PTHR19370 216 444 4.5E-20 T 19-04-2016 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 Pfam PF00175 Oxidoreductase NAD-binding domain 329 425 6.4E-9 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 PRINTS PR00410 Phenol hydroxylase reductase family signature 312 321 7.6E-8 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 PRINTS PR00410 Phenol hydroxylase reductase family signature 328 347 7.6E-8 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 PRINTS PR00410 Phenol hydroxylase reductase family signature 412 420 7.6E-8 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 SUPERFAMILY SSF63380 218 317 5.73E-14 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 Gene3D G3DSA:2.40.30.10 222 309 9.5E-12 T 19-04-2016 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 Gene3D G3DSA:3.40.50.80 310 440 1.0E-25 T 19-04-2016 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 SUPERFAMILY SSF52343 308 442 8.64E-27 T 19-04-2016 AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 Pfam PF01794 Ferric reductase like transmembrane component 55 176 4.8E-15 T 19-04-2016 IPR013130 Ferric reductase transmembrane component-like domain AMED_1737 625bb114d845560d0fe67c06ed8edba4 448 Pfam PF08022 FAD-binding domain 234 316 1.1E-5 T 19-04-2016 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 AMED_2958 669d395457088b198b5e6b973b26fca8 200 PANTHER PTHR35798:SF1 14 200 8.7E-28 T 19-04-2016 AMED_2958 669d395457088b198b5e6b973b26fca8 200 Pfam PF04472 Protein of unknown function (DUF552) 112 183 1.3E-25 T 19-04-2016 IPR007561 Cell division protein SepF/SepF-related GO:0000917 AMED_2958 669d395457088b198b5e6b973b26fca8 200 Hamap MF_01197 Cell division protein SepF [sepF]. 1 191 21.784 T 19-04-2016 IPR023052 Cell division protein SepF GO:0090529 AMED_2958 669d395457088b198b5e6b973b26fca8 200 PANTHER PTHR35798 14 200 8.7E-28 T 19-04-2016 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 830 844 1.5E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 860 872 1.5E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 844 860 1.5E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Pfam PF00196 Bacterial regulatory proteins, luxR family 829 880 5.2E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Pfam PF13191 AAA ATPase domain 7 150 1.3E-14 T 19-04-2016 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SUPERFAMILY SSF46894 819 881 5.1E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Gene3D G3DSA:1.25.40.10 435 657 3.9E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Gene3D G3DSA:1.25.40.10 698 820 3.9E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Gene3D G3DSA:1.10.10.10 825 880 2.8E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SMART SM00421 827 884 2.5E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PANTHER PTHR16305 738 814 3.5E-37 T 19-04-2016 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 PANTHER PTHR16305 6 426 3.5E-37 T 19-04-2016 AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Gene3D G3DSA:3.40.50.300 115 153 3.2E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 Gene3D G3DSA:3.40.50.300 13 71 3.2E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SUPERFAMILY SSF52540 102 211 3.28E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6477 19269f7ee6e5d379a1e6cbaa82bb1d7f 892 SUPERFAMILY SSF52540 4 68 3.28E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 SMART SM00530 12 67 6.5E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 PANTHER PTHR10245 1 184 9.3E-43 T 19-04-2016 AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 Pfam PF01381 Helix-turn-helix 15 67 6.2E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 Gene3D G3DSA:2.60.120.10 79 181 1.6E-13 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 SUPERFAMILY SSF47413 5 73 1.8E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 Gene3D G3DSA:1.10.260.40 5 75 1.4E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 SUPERFAMILY SSF51182 53 181 1.87E-18 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_4717 9884921dd3825a47eaffb50b6df781b6 187 PANTHER PTHR10245:SF21 1 184 9.3E-43 T 19-04-2016 AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 Pfam PF03023 MviN-like protein 132 573 2.9E-86 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 103 615 1.6E-79 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 134 153 7.1E-22 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 230 254 7.1E-22 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 254 275 7.1E-22 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 366 392 7.1E-22 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 464 483 7.1E-22 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PRINTS PR01806 Virulence factor MviN signature 153 169 7.1E-22 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PANTHER PTHR11206:SF90 323 500 3.6E-20 T 19-04-2016 AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PANTHER PTHR11206:SF90 92 111 3.6E-20 T 19-04-2016 AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PANTHER PTHR11206 323 500 3.6E-20 T 19-04-2016 AMED_9349 7db1be6140dcd9e831acf6cd99edbd5d 628 PANTHER PTHR11206 92 111 3.6E-20 T 19-04-2016 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 PANTHER PTHR11773 1 928 0.0 T 19-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 PANTHER PTHR11773:SF1 1 928 0.0 T 19-04-2016 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 1 927 24.009 T 19-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 Pfam PF02347 Glycine cleavage system P-protein 450 704 1.8E-10 T 19-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 Pfam PF02347 Glycine cleavage system P-protein 1 412 4.1E-165 T 19-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 1 921 0.0 T 19-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 SUPERFAMILY SSF53383 900 923 2.28E-97 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 SUPERFAMILY SSF53383 450 858 2.28E-97 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 Gene3D G3DSA:3.40.640.10 61 276 2.3E-10 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 Gene3D G3DSA:3.40.640.10 473 708 6.4E-40 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1813 668a2cfad146d422a77c3093b6f18d90 929 SUPERFAMILY SSF53383 1 413 6.35E-91 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4374 2968148b7846d1a5bc6567b0c71a3ac6 476 PANTHER PTHR32208 291 469 1.0E-26 T 19-04-2016 AMED_4374 2968148b7846d1a5bc6567b0c71a3ac6 476 Pfam PF09362 Domain of unknown function (DUF1996) 317 454 2.9E-17 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_4374 2968148b7846d1a5bc6567b0c71a3ac6 476 Pfam PF09362 Domain of unknown function (DUF1996) 95 156 4.7E-4 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_4374 2968148b7846d1a5bc6567b0c71a3ac6 476 PANTHER PTHR32208:SF28 291 469 1.0E-26 T 19-04-2016 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 Gene3D G3DSA:3.20.20.70 201 407 3.2E-46 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 Gene3D G3DSA:3.20.20.70 74 161 3.2E-46 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 PANTHER PTHR11938:SF98 202 369 1.8E-12 T 19-04-2016 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 Pfam PF01645 Conserved region in glutamate synthase 138 369 2.3E-21 T 19-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 PANTHER PTHR11938 202 369 1.8E-12 T 19-04-2016 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 SUPERFAMILY SSF51395 169 403 4.4E-48 T 19-04-2016 AMED_4752 e825ed14580e5d399ecb1962ad9c0cb1 430 SUPERFAMILY SSF51395 48 139 4.4E-48 T 19-04-2016 AMED_9262 2178e6506378572de70ee39abf79dd94 195 PANTHER PTHR30055 1 194 1.2E-20 T 19-04-2016 AMED_9262 2178e6506378572de70ee39abf79dd94 195 Gene3D G3DSA:1.10.357.10 3 184 3.3E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9262 2178e6506378572de70ee39abf79dd94 195 SUPERFAMILY SSF46689 3 81 3.49E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9262 2178e6506378572de70ee39abf79dd94 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 7.5E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9262 2178e6506378572de70ee39abf79dd94 195 SUPERFAMILY SSF48498 77 189 8.9E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 PANTHER PTHR11019:SF77 123 297 2.1E-51 T 19-04-2016 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 PANTHER PTHR11019:SF77 1 107 2.1E-51 T 19-04-2016 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 258 273 3.2E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 289 3.2E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 Pfam PF12852 Cupin 2 176 6.4E-37 T 19-04-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF51215 24 92 2.09E-7 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF51215 127 174 2.09E-7 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 PANTHER PTHR11019 123 297 2.1E-51 T 19-04-2016 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 PANTHER PTHR11019 1 107 2.1E-51 T 19-04-2016 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 Gene3D G3DSA:1.10.10.60 244 291 3.2E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 Gene3D G3DSA:1.10.10.60 188 243 4.6E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF46689 190 239 4.12E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 SUPERFAMILY SSF46689 242 291 1.97E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 Gene3D G3DSA:2.60.120.280 132 175 1.7E-6 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 Gene3D G3DSA:2.60.120.280 37 96 1.7E-6 T 19-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 Pfam PF12833 Helix-turn-helix domain 212 290 9.1E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_3752 7f00853ef74484c5bc8e54553331b64d 301 SMART SM00342 206 289 7.9E-27 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 Pfam PF00202 Aminotransferase class-III 31 448 1.5E-101 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 253 290 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 Gene3D G3DSA:3.40.640.10 66 341 1.4E-85 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 Gene3D G3DSA:3.90.1150.10 7 65 2.8E-36 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 Gene3D G3DSA:3.90.1150.10 342 450 2.8E-36 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 SUPERFAMILY SSF53383 12 449 5.7E-127 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4237 054132befdc407bb9ea997b5e884dac8 455 PANTHER PTHR11986:SF89 10 455 2.0E-225 T 19-04-2016 AMED_4237 054132befdc407bb9ea997b5e884dac8 455 PANTHER PTHR11986 10 455 2.0E-225 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_7939 0234b88c28717890f0279bca8e34c420 371 PIRSF PIRSF000183 1 371 1.1E-164 T 19-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 AMED_7939 0234b88c28717890f0279bca8e34c420 371 SUPERFAMILY SSF52283 305 358 4.17E-65 T 19-04-2016 AMED_7939 0234b88c28717890f0279bca8e34c420 371 SUPERFAMILY SSF52283 2 137 4.17E-65 T 19-04-2016 AMED_7939 0234b88c28717890f0279bca8e34c420 371 Gene3D G3DSA:3.40.50.1770 196 355 7.4E-25 T 19-04-2016 AMED_7939 0234b88c28717890f0279bca8e34c420 371 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 2 370 5.0E-171 T 19-04-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|UniPathway: UPA00527 AMED_7939 0234b88c28717890f0279bca8e34c420 371 SUPERFAMILY SSF51735 137 303 8.87E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7939 0234b88c28717890f0279bca8e34c420 371 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 6.0E-83 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_7939 0234b88c28717890f0279bca8e34c420 371 Gene3D G3DSA:3.50.50.60 177 195 1.3E-5 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7939 0234b88c28717890f0279bca8e34c420 371 SMART SM01003 4 137 4.2E-77 T 19-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMED_7939 0234b88c28717890f0279bca8e34c420 371 Gene3D G3DSA:3.40.50.1770 2 176 8.0E-58 T 19-04-2016 AMED_7939 0234b88c28717890f0279bca8e34c420 371 PANTHER PTHR10160 2 365 1.3E-192 T 19-04-2016 AMED_7939 0234b88c28717890f0279bca8e34c420 371 SMART SM01002 149 297 1.3E-85 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_7939 0234b88c28717890f0279bca8e34c420 371 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 5 137 2.6E-47 T 19-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMED_1055 2d6a907d781a136a08ee98df3b432aca 105 SUPERFAMILY SSF46785 3 103 6.61E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1055 2d6a907d781a136a08ee98df3b432aca 105 Gene3D G3DSA:1.10.10.10 2 103 2.2E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1055 2d6a907d781a136a08ee98df3b432aca 105 PANTHER PTHR33169 1 104 3.5E-28 T 19-04-2016 AMED_1055 2d6a907d781a136a08ee98df3b432aca 105 Pfam PF03551 Transcriptional regulator PadR-like family 14 86 6.1E-22 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_1055 2d6a907d781a136a08ee98df3b432aca 105 PANTHER PTHR33169:SF12 1 104 3.5E-28 T 19-04-2016 AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PANTHER PTHR24322 9 138 9.8E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PANTHER PTHR24322 154 185 9.8E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 6.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.3E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 7 245 6.5E-90 T 19-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 SUPERFAMILY SSF51735 5 245 6.76E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PANTHER PTHR24322:SF328 9 138 9.8E-46 T 19-04-2016 AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PANTHER PTHR24322:SF328 154 185 9.8E-46 T 19-04-2016 AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 244 1.5E-63 T 19-04-2016 AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 Gene3D G3DSA:3.40.50.720 4 245 8.4E-83 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 9.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 9.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 9.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4042 70f470efe8e62a0db192f566d02d7bf1 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 185 2.7E-5 T 19-04-2016 AMED_3545 cc29d41554aa0e59e3b9f60f19e55327 404 Pfam PF12704 MacB-like periplasmic core domain 33 249 7.0E-15 T 19-04-2016 IPR025857 MacB-like periplasmic core domain AMED_3545 cc29d41554aa0e59e3b9f60f19e55327 404 PANTHER PTHR30572 16 402 6.7E-53 T 19-04-2016 AMED_3545 cc29d41554aa0e59e3b9f60f19e55327 404 Pfam PF02687 FtsX-like permease family 286 398 2.5E-18 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 4.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 4.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 SUPERFAMILY SSF51735 3 235 5.55E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 3.9E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 Pfam PF00106 short chain dehydrogenase 3 190 1.9E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 Gene3D G3DSA:3.40.50.720 3 233 8.3E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PANTHER PTHR24322 7 133 4.6E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6931 4fa8f0e0d66c6a7873e1add36629094d 244 PANTHER PTHR24322 149 172 4.6E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 SUPERFAMILY SSF49785 65 206 4.25E-18 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 SUPERFAMILY SSF51445 324 558 1.52E-24 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 SUPERFAMILY SSF50370 880 1017 1.39E-32 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Gene3D G3DSA:2.80.10.50 885 1016 6.7E-24 T 19-04-2016 AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Gene3D G3DSA:2.60.120.260 65 198 1.3E-15 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 PANTHER PTHR10066 97 544 1.6E-29 T 19-04-2016 AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 99 202 8.2E-9 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 919 1003 1.4E-17 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 391 552 3.7E-15 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Pfam PF00703 Glycosyl hydrolases family 2 208 327 1.6E-5 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Gene3D G3DSA:2.60.40.320 199 325 1.1E-5 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_7377 05f668db49decbe4aad2fabf00706d6b 1018 Gene3D G3DSA:3.20.20.80 326 555 3.3E-36 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Gene3D G3DSA:1.20.1560.10 6 320 9.1E-67 T 19-04-2016 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 SMART SM00382 360 546 5.9E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Pfam PF00664 ABC transporter transmembrane region 17 288 5.6E-47 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Pfam PF00005 ABC transporter 353 498 1.5E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 PANTHER PTHR24221 3 575 1.1E-225 T 19-04-2016 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 SUPERFAMILY SSF90123 6 315 4.05E-74 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 PANTHER PTHR24221:SF190 3 575 1.1E-225 T 19-04-2016 AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 SUPERFAMILY SSF52540 328 570 3.4E-80 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5273 a9b844dad9bd714b6a0c9cd2ed3a6212 577 Gene3D G3DSA:3.40.50.300 333 564 6.1E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2834 82960b41d778b154c76ae61e64014862 149 Pfam PF01592 NifU-like N terminal domain 6 127 4.9E-31 T 19-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 AMED_2834 82960b41d778b154c76ae61e64014862 149 PANTHER PTHR10093 3 88 8.5E-39 T 19-04-2016 AMED_2834 82960b41d778b154c76ae61e64014862 149 PANTHER PTHR10093 104 140 8.5E-39 T 19-04-2016 AMED_2834 82960b41d778b154c76ae61e64014862 149 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 3 139 1.0E-51 T 19-04-2016 AMED_2834 82960b41d778b154c76ae61e64014862 149 Gene3D G3DSA:3.90.1010.10 5 143 6.2E-47 T 19-04-2016 AMED_2834 82960b41d778b154c76ae61e64014862 149 SUPERFAMILY SSF82649 2 141 6.54E-49 T 19-04-2016 AMED_5315 af2c198d9f9570dbf7a92bfe91bfce08 327 SMART SM00418 248 324 0.0012 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5315 af2c198d9f9570dbf7a92bfe91bfce08 327 Gene3D G3DSA:1.10.10.10 257 312 6.7E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5315 af2c198d9f9570dbf7a92bfe91bfce08 327 SUPERFAMILY SSF46785 266 318 7.52E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5315 af2c198d9f9570dbf7a92bfe91bfce08 327 Pfam PF01022 Bacterial regulatory protein, arsR family 264 299 1.4E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 Gene3D G3DSA:2.40.30.10 49 130 1.3E-23 T 19-04-2016 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 PANTHER PTHR19370:SF113 49 192 3.3E-36 T 19-04-2016 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 SUPERFAMILY SSF63380 49 137 9.14E-19 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 Gene3D G3DSA:3.40.50.80 131 192 5.9E-12 T 19-04-2016 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 SUPERFAMILY SSF52343 136 202 7.99E-15 T 19-04-2016 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 82 4.4E-15 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 149 168 4.4E-15 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 174 183 4.4E-15 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 PRINTS PR00409 Phthalate dioxygenase reductase family signature 82 94 4.4E-15 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_9116 b7d78564cdcd1c285a97b7483bfd097f 232 PANTHER PTHR19370 49 192 3.3E-36 T 19-04-2016 AMED_5687 d8af589b22ecb5a3925d85a81e9816ad 124 SUPERFAMILY SSF54909 2 111 3.75E-27 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5687 d8af589b22ecb5a3925d85a81e9816ad 124 Gene3D G3DSA:3.30.70.1060 2 113 1.2E-36 T 19-04-2016 AMED_5687 d8af589b22ecb5a3925d85a81e9816ad 124 Pfam PF03795 YCII-related domain 2 110 7.8E-18 T 19-04-2016 IPR005545 YCII-related AMED_5687 d8af589b22ecb5a3925d85a81e9816ad 124 PANTHER PTHR35174 2 111 1.6E-25 T 19-04-2016 AMED_0527 b5c51b96e26cff9d908a55a96f817d44 449 PANTHER PTHR11432 27 367 3.2E-149 T 19-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 AMED_0527 b5c51b96e26cff9d908a55a96f817d44 449 Pfam PF00146 NADH dehydrogenase 35 354 4.2E-124 T 19-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 AMED_0527 b5c51b96e26cff9d908a55a96f817d44 449 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 27 361 24.481 T 19-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 AMED_0527 b5c51b96e26cff9d908a55a96f817d44 449 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 236 249 - T 19-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 AMED_0527 b5c51b96e26cff9d908a55a96f817d44 449 PANTHER PTHR11432:SF3 27 367 3.2E-149 T 19-04-2016 AMED_8051 ad85328982fcf2a45d349a90ffd01b03 386 PANTHER PTHR30337:SF0 4 273 1.4E-74 T 19-04-2016 AMED_8051 ad85328982fcf2a45d349a90ffd01b03 386 PANTHER PTHR30337 4 273 1.4E-74 T 19-04-2016 AMED_8051 ad85328982fcf2a45d349a90ffd01b03 386 Gene3D G3DSA:3.60.21.10 4 268 5.3E-73 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8051 ad85328982fcf2a45d349a90ffd01b03 386 Pfam PF00149 Calcineurin-like phosphoesterase 5 221 5.0E-13 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_8051 ad85328982fcf2a45d349a90ffd01b03 386 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 5 247 3.6E-48 T 19-04-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AMED_8051 ad85328982fcf2a45d349a90ffd01b03 386 SUPERFAMILY SSF56300 5 277 4.16E-52 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_3916 a4b295abfa4ad54d7de063a234ea7d2f 447 Gene3D G3DSA:3.40.190.10 172 374 2.8E-38 T 19-04-2016 AMED_3916 a4b295abfa4ad54d7de063a234ea7d2f 447 SUPERFAMILY SSF53850 58 440 3.26E-71 T 19-04-2016 AMED_3916 a4b295abfa4ad54d7de063a234ea7d2f 447 PANTHER PTHR30061:SF7 12 443 4.7E-100 T 19-04-2016 AMED_3916 a4b295abfa4ad54d7de063a234ea7d2f 447 PANTHER PTHR30061 12 443 4.7E-100 T 19-04-2016 AMED_3916 a4b295abfa4ad54d7de063a234ea7d2f 447 Pfam PF01547 Bacterial extracellular solute-binding protein 72 355 5.6E-39 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 9 483 1.9E-210 T 19-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 Gene3D G3DSA:3.40.309.10 265 452 1.4E-65 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 PANTHER PTHR11699:SF27 5 486 2.0E-248 T 19-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 Pfam PF00171 Aldehyde dehydrogenase family 23 479 1.2E-141 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 Gene3D G3DSA:3.40.605.10 8 264 3.6E-87 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 SUPERFAMILY SSF53720 7 485 1.83E-148 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_6635 1ecc64667443e9c5b55de822a294135e 499 PANTHER PTHR11699 5 486 2.0E-248 T 19-04-2016 AMED_3424 ce09d778fe4664cc82efea775a4d8a6b 553 Pfam PF12222 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 69 452 2.2E-61 T 19-04-2016 IPR021102 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A AMED_3424 ce09d778fe4664cc82efea775a4d8a6b 553 PANTHER PTHR31104 74 543 2.3E-66 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423:SF468 476 677 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423:SF468 435 451 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423:SF468 377 414 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423:SF468 53 63 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Pfam PF08376 Nitrate and nitrite sensing 107 345 1.3E-33 T 19-04-2016 IPR013587 Nitrate/nitrite sensing protein AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 571 678 2.7E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Pfam PF00672 HAMP domain 365 451 4.8E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 SMART SM00304 383 455 1.1E-4 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 SUPERFAMILY SSF55874 553 677 2.36E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423 476 677 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423 435 451 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423 377 414 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 PANTHER PTHR24423 53 63 5.5E-35 T 19-04-2016 AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 Gene3D G3DSA:3.30.565.10 534 680 5.6E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8532 507cf8445f2f26d8422ac5e1e6bcf0bc 1046 SMART SM00387 567 680 1.4E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 SUPERFAMILY SSF48498 80 193 2.11E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 3.7E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 3.7E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 PANTHER PTHR30328:SF2 6 199 2.7E-38 T 19-04-2016 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 PANTHER PTHR30328 6 199 2.7E-38 T 19-04-2016 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 Pfam PF16859 Bacterial transcriptional repressor C-terminal 80 183 3.1E-24 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 SUPERFAMILY SSF46689 13 76 1.3E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 Gene3D G3DSA:1.10.10.60 12 60 4.4E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 Gene3D G3DSA:1.10.357.10 62 200 4.4E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1755 e791a76dae6230a5baee381f61aeadb6 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 3.1E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0830 71255e4d4bfc675606be6ddc4bafe263 205 Pfam PF08241 Methyltransferase domain 42 138 4.2E-18 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_0830 71255e4d4bfc675606be6ddc4bafe263 205 PANTHER PTHR10108 2 195 5.2E-24 T 19-04-2016 AMED_0830 71255e4d4bfc675606be6ddc4bafe263 205 Gene3D G3DSA:3.40.50.150 8 190 9.1E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0830 71255e4d4bfc675606be6ddc4bafe263 205 SUPERFAMILY SSF53335 8 189 9.36E-34 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6097 343134fb897335684e7a67ef867de2be 620 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 1 514 8.6E-94 T 19-04-2016 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 AMED_6097 343134fb897335684e7a67ef867de2be 620 PANTHER PTHR10110 3 524 1.4E-74 T 19-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 AMED_6097 343134fb897335684e7a67ef867de2be 620 Pfam PF00999 Sodium/hydrogen exchanger family 2 395 8.0E-55 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_6097 343134fb897335684e7a67ef867de2be 620 PANTHER PTHR10110:SF86 3 524 1.4E-74 T 19-04-2016 AMED_6097 343134fb897335684e7a67ef867de2be 620 Gene3D G3DSA:3.30.40.10 537 617 4.6E-20 T 19-04-2016 IPR013083 Zinc finger, RING/FYVE/PHD-type AMED_6097 343134fb897335684e7a67ef867de2be 620 Pfam PF02148 Zn-finger in ubiquitin-hydrolases and other protein 556 616 6.9E-10 T 19-04-2016 IPR001607 Zinc finger, UBP-type GO:0008270 AMED_6097 343134fb897335684e7a67ef867de2be 620 SUPERFAMILY SSF57850 537 617 3.77E-22 T 19-04-2016 AMED_7365 181c4c31e1cc8759a36d991ee49352d1 500 Pfam PF12849 PBP superfamily domain 15 344 3.0E-37 T 19-04-2016 IPR024370 PBP domain AMED_7365 181c4c31e1cc8759a36d991ee49352d1 500 SUPERFAMILY SSF53850 20 382 8.14E-54 T 19-04-2016 AMED_7365 181c4c31e1cc8759a36d991ee49352d1 500 Gene3D G3DSA:3.40.190.10 231 363 2.0E-17 T 19-04-2016 AMED_7365 181c4c31e1cc8759a36d991ee49352d1 500 PANTHER PTHR30570:SF0 1 368 2.4E-48 T 19-04-2016 AMED_7365 181c4c31e1cc8759a36d991ee49352d1 500 Gene3D G3DSA:3.40.190.10 19 171 6.5E-26 T 19-04-2016 AMED_7365 181c4c31e1cc8759a36d991ee49352d1 500 PANTHER PTHR30570 1 368 2.4E-48 T 19-04-2016 AMED_2173 c70c914796b88a456da3a375bf1da909 324 SUPERFAMILY SSF53850 41 322 3.53E-61 T 19-04-2016 AMED_2173 c70c914796b88a456da3a375bf1da909 324 Pfam PF16868 NMT1-like family 44 321 7.2E-71 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMED_2173 c70c914796b88a456da3a375bf1da909 324 Gene3D G3DSA:3.40.190.10 126 259 7.6E-32 T 19-04-2016 AMED_2173 c70c914796b88a456da3a375bf1da909 324 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 3 321 3.9E-83 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMED_2173 c70c914796b88a456da3a375bf1da909 324 PANTHER PTHR30024:SF5 42 321 1.1E-56 T 19-04-2016 AMED_2173 c70c914796b88a456da3a375bf1da909 324 PANTHER PTHR30024 42 321 1.1E-56 T 19-04-2016 AMED_2173 c70c914796b88a456da3a375bf1da909 324 Gene3D G3DSA:3.40.190.10 41 119 4.4E-45 T 19-04-2016 AMED_2173 c70c914796b88a456da3a375bf1da909 324 Gene3D G3DSA:3.40.190.10 260 321 4.4E-45 T 19-04-2016 AMED_1625 7687f2d55a5a581a63b28f67040c8855 142 Gene3D G3DSA:1.10.10.10 8 141 9.1E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1625 7687f2d55a5a581a63b28f67040c8855 142 Pfam PF12802 MarR family 34 90 2.4E-8 T 19-04-2016 AMED_1625 7687f2d55a5a581a63b28f67040c8855 142 PANTHER PTHR33164 11 135 2.0E-24 T 19-04-2016 AMED_1625 7687f2d55a5a581a63b28f67040c8855 142 SMART SM00347 27 127 4.6E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1625 7687f2d55a5a581a63b28f67040c8855 142 SUPERFAMILY SSF46785 8 141 5.04E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1625 7687f2d55a5a581a63b28f67040c8855 142 PANTHER PTHR33164:SF9 11 135 2.0E-24 T 19-04-2016 AMED_8309 6cd9ce71a84547cc22554d42810ce42f 222 SUPERFAMILY SSF55729 31 201 8.58E-38 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8309 6cd9ce71a84547cc22554d42810ce42f 222 Pfam PF13302 Acetyltransferase (GNAT) domain 33 176 8.0E-15 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8309 6cd9ce71a84547cc22554d42810ce42f 222 PANTHER PTHR13256 25 204 2.3E-30 T 19-04-2016 AMED_8309 6cd9ce71a84547cc22554d42810ce42f 222 PANTHER PTHR13256:SF24 25 204 2.3E-30 T 19-04-2016 AMED_8309 6cd9ce71a84547cc22554d42810ce42f 222 Gene3D G3DSA:3.40.630.30 15 205 8.8E-46 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PANTHER PTHR22939 81 507 8.4E-101 T 19-04-2016 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 Gene3D G3DSA:2.30.42.10 435 506 8.6E-18 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 Gene3D G3DSA:2.40.10.10 302 425 1.0E-40 T 19-04-2016 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 Pfam PF13180 PDZ domain 422 505 3.9E-13 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 SMART SM00228 421 496 7.4E-8 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 310 334 2.1E-45 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 244 256 2.1E-45 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 270 290 2.1E-45 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 351 368 2.1E-45 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 373 390 2.1E-45 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PRINTS PR00834 HtrA/DegQ protease family signature 454 466 2.1E-45 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 SUPERFAMILY SSF50494 207 418 7.88E-52 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 Pfam PF13365 Trypsin-like peptidase domain 235 380 1.1E-31 T 19-04-2016 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 Gene3D G3DSA:2.40.10.10 205 296 1.7E-25 T 19-04-2016 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 PANTHER PTHR22939:SF79 81 507 8.4E-101 T 19-04-2016 AMED_1069 e5aed13c72dd10362073cd20f6d1dc96 508 SUPERFAMILY SSF50156 392 496 4.73E-17 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_5868 9fc9b72f30a957b6be190387695778fa 90 Gene3D G3DSA:3.40.190.10 18 84 5.4E-13 T 19-04-2016 AMED_5868 9fc9b72f30a957b6be190387695778fa 90 SUPERFAMILY SSF53850 22 82 1.7E-8 T 19-04-2016 AMED_5868 9fc9b72f30a957b6be190387695778fa 90 Pfam PF03466 LysR substrate binding domain 19 85 2.1E-8 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_7048 881c9d1567a39bc2dac7a326b6af76a8 238 PANTHER PTHR34148:SF1 1 236 1.5E-34 T 19-04-2016 AMED_7048 881c9d1567a39bc2dac7a326b6af76a8 238 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 238 37.898 T 19-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_7048 881c9d1567a39bc2dac7a326b6af76a8 238 Pfam PF02654 Cobalamin-5-phosphate synthase 2 233 1.2E-36 T 19-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_7048 881c9d1567a39bc2dac7a326b6af76a8 238 PANTHER PTHR34148 1 236 1.5E-34 T 19-04-2016 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:2.40.10.10 270 346 8.8E-21 T 19-04-2016 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:3.30.300.50 33 112 3.4E-25 T 19-04-2016 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Pfam PF02983 Alpha-lytic protease prodomain 114 171 1.2E-13 T 19-04-2016 IPR004236 Peptidase S1A, alpha-lytic prodomain GO:0005576|GO:0006508|GO:0008236 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:2.40.10.10 190 269 1.4E-20 T 19-04-2016 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 SUPERFAMILY SSF50494 192 358 6.15E-27 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 271 291 1.4E-29 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 335 349 1.4E-29 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 213 227 1.4E-29 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 292 309 1.4E-29 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 311 334 1.4E-29 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 Gene3D G3DSA:3.30.300.50 114 181 3.7E-17 T 19-04-2016 AMED_0263 a95a3f7998ef769a7cfb6e3a3ad3aefe 367 PIRSF PIRSF001134 1 367 2.7E-91 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PANTHER PTHR24291:SF46 33 422 1.9E-98 T 19-04-2016 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 382 391 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 379 389 5.6E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 30 49 5.6E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 263 289 5.6E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 243 260 5.6E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 389 412 5.6E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00463 E-class P450 group I signature 344 368 5.6E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 Gene3D G3DSA:1.10.630.10 6 440 6.9E-109 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 SUPERFAMILY SSF48264 7 440 4.06E-104 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 Pfam PF00067 Cytochrome P450 31 421 3.4E-78 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 306 317 4.2E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 254 271 4.2E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 380 389 4.2E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PRINTS PR00385 P450 superfamily signature 389 400 4.2E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4819 ce4e9849dd2c274c89fbdb549c21bcf6 443 PANTHER PTHR24291 33 422 1.9E-98 T 19-04-2016 AMED_2464 fa5110c75fbd55dc8ac509e1f5c62bfb 138 Gene3D G3DSA:1.10.490.10 2 102 1.7E-21 T 19-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMED_2464 fa5110c75fbd55dc8ac509e1f5c62bfb 138 SUPERFAMILY SSF46458 2 101 4.76E-18 T 19-04-2016 IPR009050 Globin-like AMED_2464 fa5110c75fbd55dc8ac509e1f5c62bfb 138 Pfam PF01152 Bacterial-like globin 3 86 1.6E-11 T 19-04-2016 IPR001486 Truncated hemoglobin GO:0019825 AMED_0592 9cbc0c5cff143f5afb41801075665eb7 308 Gene3D G3DSA:3.20.20.30 11 266 4.9E-58 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0592 9cbc0c5cff143f5afb41801075665eb7 308 SUPERFAMILY SSF51679 11 269 8.24E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0592 9cbc0c5cff143f5afb41801075665eb7 308 Pfam PF00296 Luciferase-like monooxygenase 22 266 5.7E-41 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0592 9cbc0c5cff143f5afb41801075665eb7 308 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 32 285 2.2E-60 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_0592 9cbc0c5cff143f5afb41801075665eb7 308 PANTHER PTHR30011 15 253 5.1E-48 T 19-04-2016 AMED_0592 9cbc0c5cff143f5afb41801075665eb7 308 PANTHER PTHR30011:SF5 15 253 5.1E-48 T 19-04-2016 AMED_9136 a7b0542da3f58e94e740f7fe409763c9 269 SMART SM00382 30 233 2.1E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9136 a7b0542da3f58e94e740f7fe409763c9 269 PANTHER PTHR24220 7 228 2.3E-78 T 19-04-2016 AMED_9136 a7b0542da3f58e94e740f7fe409763c9 269 SUPERFAMILY SSF52540 3 234 7.33E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9136 a7b0542da3f58e94e740f7fe409763c9 269 Pfam PF00005 ABC transporter 22 177 8.9E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9136 a7b0542da3f58e94e740f7fe409763c9 269 PANTHER PTHR24220:SF575 7 228 2.3E-78 T 19-04-2016 AMED_9136 a7b0542da3f58e94e740f7fe409763c9 269 Gene3D G3DSA:3.40.50.300 2 234 2.3E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 PIRSF PIRSF001589 1 612 1.9E-134 T 19-04-2016 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 Gene3D G3DSA:3.40.50.620 462 577 9.8E-72 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 Gene3D G3DSA:3.40.50.620 224 400 9.8E-72 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 PANTHER PTHR11772:SF7 447 607 7.5E-202 T 19-04-2016 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 PANTHER PTHR11772:SF7 2 398 7.5E-202 T 19-04-2016 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 Pfam PF00733 Asparagine synthase 240 577 2.2E-81 T 19-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 Pfam PF13537 Glutamine amidotransferase domain 48 169 3.4E-45 T 19-04-2016 IPR017932 Glutamine amidotransferase type 2 domain AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 PANTHER PTHR11772 447 607 7.5E-202 T 19-04-2016 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 PANTHER PTHR11772 2 398 7.5E-202 T 19-04-2016 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 Gene3D G3DSA:3.60.20.10 1 223 8.6E-74 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 538 1.2E-144 T 19-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 SUPERFAMILY SSF56235 1 224 3.77E-63 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 SUPERFAMILY SSF52402 229 396 3.07E-58 T 19-04-2016 AMED_1891 f4e1f81c42210ecc8c6e60c7b5019735 613 SUPERFAMILY SSF52402 458 574 3.07E-58 T 19-04-2016 AMED_6933 6fd71624c0262a1506a21397c4ceb2b6 148 Pfam PF13673 Acetyltransferase (GNAT) domain 47 125 9.0E-13 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6933 6fd71624c0262a1506a21397c4ceb2b6 148 Gene3D G3DSA:3.40.630.30 2 132 2.8E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6933 6fd71624c0262a1506a21397c4ceb2b6 148 SUPERFAMILY SSF55729 1 132 2.48E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 36 140 4.5E-23 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 Gene3D G3DSA:3.40.50.720 180 299 1.7E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 PANTHER PTHR11695:SF601 22 354 1.3E-107 T 19-04-2016 AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 PANTHER PTHR11695 22 354 1.3E-107 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 Pfam PF00107 Zinc-binding dehydrogenase 188 316 1.3E-18 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 Gene3D G3DSA:3.90.180.10 4 179 9.2E-39 T 19-04-2016 IPR011032 GroES-like AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 SUPERFAMILY SSF51735 158 320 2.77E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5761 a4d2a69e9e715cb0b11dbfff46315118 354 SUPERFAMILY SSF50129 11 176 3.65E-47 T 19-04-2016 IPR011032 GroES-like AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Gene3D G3DSA:3.40.190.10 105 172 3.8E-19 T 19-04-2016 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 SUPERFAMILY SSF46785 4 85 2.93E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Gene3D G3DSA:3.40.190.10 173 257 4.2E-16 T 19-04-2016 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 SUPERFAMILY SSF53850 104 287 5.35E-30 T 19-04-2016 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PANTHER PTHR30346:SF7 1 293 4.1E-78 T 19-04-2016 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PANTHER PTHR30346 1 293 4.1E-78 T 19-04-2016 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Gene3D G3DSA:1.10.10.10 2 83 1.1E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.7E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.6E-19 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4619 8da1b00f31fcc40e7dbc33cfe4eeffaa 293 Pfam PF03466 LysR substrate binding domain 105 283 1.1E-30 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 286 392 1.7E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 337 6.3E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 392 6.3E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 6.3E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 351 6.3E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 Gene3D G3DSA:3.30.565.10 245 391 3.8E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 SUPERFAMILY SSF47384 165 236 2.75E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 Pfam PF00512 His Kinase A (phospho-acceptor) domain 178 235 3.8E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 Gene3D G3DSA:1.10.287.130 170 235 3.1E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 PANTHER PTHR24423 165 396 2.6E-51 T 19-04-2016 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 SMART SM00387 285 395 7.1E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 SMART SM00388 177 241 2.1E-7 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_0897 fc3ce06ee3433aa193dbc1612620bc23 397 SUPERFAMILY SSF55874 241 391 1.31E-32 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 SMART SM00065 27 174 3.2E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 Pfam PF03861 ANTAR domain 179 231 3.1E-13 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 Gene3D G3DSA:1.10.10.10 180 234 1.2E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 PIRSF PIRSF036625 1 236 3.2E-43 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 SUPERFAMILY SSF52172 166 231 5.47E-7 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 SUPERFAMILY SSF55781 28 174 1.22E-22 T 19-04-2016 IPR029016 GAF domain-like AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 Gene3D G3DSA:3.30.450.40 15 178 6.7E-20 T 19-04-2016 IPR029016 GAF domain-like AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 Pfam PF13185 GAF domain 34 163 4.8E-13 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6551 e80073ab9233bd9c80331e04a09aafee 237 SMART SM01012 176 231 1.7E-13 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 3.6E-57 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PANTHER PTHR21342:SF1 1 156 9.9E-73 T 19-04-2016 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PANTHER PTHR21342 1 156 9.9E-73 T 19-04-2016 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 62 5.7E-16 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 Gene3D G3DSA:3.40.50.620 1 155 5.0E-53 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 SUPERFAMILY SSF52374 1 155 1.31E-43 T 19-04-2016 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 75 0.002 T 19-04-2016 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 Pfam PF01467 Cytidylyltransferase-like 6 132 3.8E-20 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 157 33.429 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 4.7E-48 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 4.7E-48 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 111 133 4.7E-48 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 4.7E-48 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_1789 a742a54c83c1ad55d8e792f79e63ece5 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 4.7E-48 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMED_3036 83b5ef0e0e87f5daf7dd4a18e026f5b6 366 SUPERFAMILY SSF55729 235 355 1.92E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3036 83b5ef0e0e87f5daf7dd4a18e026f5b6 366 Pfam PF08445 FR47-like protein 269 351 8.6E-24 T 19-04-2016 IPR013653 FR47-like GO:0016747 AMED_3036 83b5ef0e0e87f5daf7dd4a18e026f5b6 366 Gene3D G3DSA:3.40.630.30 238 353 4.9E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3036 83b5ef0e0e87f5daf7dd4a18e026f5b6 366 PANTHER PTHR23091 209 354 3.4E-16 T 19-04-2016 AMED_3036 83b5ef0e0e87f5daf7dd4a18e026f5b6 366 PANTHER PTHR23091:SF276 209 354 3.4E-16 T 19-04-2016 AMED_0015 90e026af1d902ff196c6466aca0b6a72 265 Gene3D G3DSA:1.10.260.40 13 67 7.7E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0015 90e026af1d902ff196c6466aca0b6a72 265 SUPERFAMILY SSF47413 11 71 6.48E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 SUPERFAMILY SSF52279 634 867 3.14E-54 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 SUPERFAMILY SSF51445 307 630 6.11E-84 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 SUPERFAMILY SSF49785 30 155 1.06E-33 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 353 596 5.0E-43 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Pfam PF00754 F5/8 type C domain 173 285 2.8E-24 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Pfam PF00754 F5/8 type C domain 38 150 4.0E-27 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Gene3D G3DSA:3.40.50.1700 620 867 2.5E-70 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 SMART SM01217 899 965 3.2E-28 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 634 864 2.7E-54 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 424 440 6.5E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 455 471 6.5E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 353 369 6.5E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 378 397 6.5E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 PRINTS PR00133 Glycosyl hydrolase family 3 signature 529 547 6.5E-24 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Pfam PF14310 Fibronectin type III-like domain 899 965 3.3E-21 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Gene3D G3DSA:2.60.120.260 165 293 1.2E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Gene3D G3DSA:2.60.120.260 28 159 1.0E-33 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 PANTHER PTHR30620 278 976 6.4E-236 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 SUPERFAMILY SSF49785 173 289 1.84E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5251 c6cccca3416d18a7b184f7fe636b0eda 977 Gene3D G3DSA:3.20.20.300 307 609 4.5E-96 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 PANTHER PTHR24220 6 255 2.2E-176 T 19-04-2016 AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 Gene3D G3DSA:3.40.50.300 5 234 3.9E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 SMART SM00382 29 225 4.5E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 SUPERFAMILY SSF52540 7 231 7.21E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 PANTHER PTHR24220:SF537 6 255 2.2E-176 T 19-04-2016 IPR030296 Probable ABC transporter ATP-binding protein Mkl AMED_0601 e1ca97b3908e2d718963d76281ffe9d2 390 Pfam PF00005 ABC transporter 21 168 5.6E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3605 f9c0fc3de54bf811e2db3b8e6e68e69c 155 SUPERFAMILY SSF51182 10 121 3.85E-24 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3605 f9c0fc3de54bf811e2db3b8e6e68e69c 155 Pfam PF07883 Cupin domain 40 105 2.5E-15 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_3605 f9c0fc3de54bf811e2db3b8e6e68e69c 155 Gene3D G3DSA:2.60.120.10 17 154 5.4E-36 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8866 793b83012af982f382375aed329359c7 603 Pfam PF16861 Carbamoyltransferase C-terminus 428 597 3.7E-71 T 19-04-2016 IPR031730 Carbamoyltransferase, C-terminal AMED_8866 793b83012af982f382375aed329359c7 603 SUPERFAMILY SSF53067 2 78 9.06E-11 T 19-04-2016 AMED_8866 793b83012af982f382375aed329359c7 603 SUPERFAMILY SSF53067 156 225 9.06E-11 T 19-04-2016 AMED_8866 793b83012af982f382375aed329359c7 603 SUPERFAMILY SSF53067 292 378 9.06E-11 T 19-04-2016 AMED_8866 793b83012af982f382375aed329359c7 603 Pfam PF02543 Carbamoyltransferase N-terminus 3 66 3.0E-14 T 19-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 AMED_8866 793b83012af982f382375aed329359c7 603 Pfam PF02543 Carbamoyltransferase N-terminus 153 378 1.7E-48 T 19-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 AMED_8866 793b83012af982f382375aed329359c7 603 PANTHER PTHR34847 107 603 9.2E-120 T 19-04-2016 AMED_8866 793b83012af982f382375aed329359c7 603 PANTHER PTHR34847 1 85 9.2E-120 T 19-04-2016 AMED_3468 e0a2aea96cf7ebe1604b37fc7432585b 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.9E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3468 e0a2aea96cf7ebe1604b37fc7432585b 198 PANTHER PTHR30055 2 196 1.2E-12 T 19-04-2016 AMED_3468 e0a2aea96cf7ebe1604b37fc7432585b 198 Gene3D G3DSA:1.10.357.10 1 194 1.2E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3468 e0a2aea96cf7ebe1604b37fc7432585b 198 SUPERFAMILY SSF46689 2 71 6.16E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7496 282da2cb33d07669774ddc2eae0558ee 224 SUPERFAMILY SSF82153 84 220 2.49E-29 T 19-04-2016 IPR000782 FAS1 domain AMED_7496 282da2cb33d07669774ddc2eae0558ee 224 PANTHER PTHR10900 72 220 3.2E-32 T 19-04-2016 AMED_7496 282da2cb33d07669774ddc2eae0558ee 224 SMART SM00554 122 221 6.6E-23 T 19-04-2016 IPR000782 FAS1 domain AMED_7496 282da2cb33d07669774ddc2eae0558ee 224 Pfam PF02469 Fasciclin domain 98 220 9.9E-29 T 19-04-2016 IPR000782 FAS1 domain AMED_7496 282da2cb33d07669774ddc2eae0558ee 224 Gene3D G3DSA:2.30.180.10 88 218 1.1E-28 T 19-04-2016 IPR000782 FAS1 domain AMED_4951 47a32875f9496b815fc61825b4df1179 357 PIRSF PIRSF002849 5 336 6.8E-134 T 19-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted AMED_4951 47a32875f9496b815fc61825b4df1179 357 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 55 185 1.5E-59 T 19-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMED_4951 47a32875f9496b815fc61825b4df1179 357 Gene3D G3DSA:1.10.8.300 214 331 1.2E-37 T 19-04-2016 AMED_4951 47a32875f9496b815fc61825b4df1179 357 Gene3D G3DSA:3.40.50.300 37 201 2.0E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4951 47a32875f9496b815fc61825b4df1179 357 PANTHER PTHR11603 25 339 2.3E-202 T 19-04-2016 AMED_4951 47a32875f9496b815fc61825b4df1179 357 PANTHER PTHR11603:SF153 25 339 2.3E-202 T 19-04-2016 AMED_4951 47a32875f9496b815fc61825b4df1179 357 SUPERFAMILY SSF52540 31 306 2.38E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 PANTHER PTHR16305 25 417 3.2E-28 T 19-04-2016 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 SMART SM00421 690 747 2.3E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 Gene3D G3DSA:1.10.10.10 683 747 9.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 Pfam PF13191 AAA ATPase domain 26 196 3.4E-20 T 19-04-2016 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 707 723 4.4E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 723 735 4.4E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 693 707 4.4E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 ProSitePatterns PS00622 LuxR-type HTH domain signature. 707 734 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 Gene3D G3DSA:1.25.40.10 600 632 4.4E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 Gene3D G3DSA:1.25.40.10 389 516 4.4E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 Pfam PF00196 Bacterial regulatory proteins, luxR family 692 746 8.1E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 PANTHER PTHR16305:SF28 25 417 3.2E-28 T 19-04-2016 AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 SUPERFAMILY SSF52540 26 86 1.52E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 SUPERFAMILY SSF52540 139 262 1.52E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6244 42244d0ab0b9ea39d37287ab5e913071 771 SUPERFAMILY SSF46894 683 747 4.76E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4709 541f3e09e06d6669cc85bb2b0066021d 362 PANTHER PTHR38133 10 357 9.7E-50 T 19-04-2016 AMED_4709 541f3e09e06d6669cc85bb2b0066021d 362 PANTHER PTHR38133:SF1 10 357 9.7E-50 T 19-04-2016 AMED_2342 298bbce62863a4236b88ab848441167c 64 Pfam PF11248 Protein of unknown function (DUF3046) 1 62 2.8E-29 T 19-04-2016 IPR021408 Protein of unknown function DUF3046 AMED_0454 59d568ca22e2a293bcc5c75c4b0bcaae 170 Gene3D G3DSA:3.30.1460.10 4 138 6.0E-16 T 19-04-2016 AMED_0454 59d568ca22e2a293bcc5c75c4b0bcaae 170 SUPERFAMILY SSF69635 4 128 1.0E-29 T 19-04-2016 AMED_0454 59d568ca22e2a293bcc5c75c4b0bcaae 170 Pfam PF10722 Putative bacterial sensory transduction regulator 4 126 1.3E-21 T 19-04-2016 IPR019660 Putative sensory transduction regulator YbjN AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 Pfam PF12838 4Fe-4S dicluster domain 157 227 3.9E-10 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 158 169 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 SUPERFAMILY SSF46548 118 241 6.63E-24 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 SUPERFAMILY SSF54292 2 115 4.45E-21 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 Gene3D G3DSA:1.10.1060.10 110 243 1.3E-20 T 19-04-2016 AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 119 2.1E-24 T 19-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 PANTHER PTHR11921 3 242 3.8E-114 T 19-04-2016 AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 Gene3D G3DSA:3.10.20.30 2 109 3.6E-27 T 19-04-2016 IPR012675 Beta-grasp domain AMED_3221 23d724cd955fa1c9c9e79dda01e2dd2b 248 PANTHER PTHR11921:SF13 3 242 3.8E-114 T 19-04-2016 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:3.40.50.720 318 505 1.5E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 504 604 9.4E-19 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 323 501 5.9E-60 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:1.10.1040.10 643 720 6.2E-9 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 206 2.3E-32 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:3.90.226.10 241 300 1.9E-55 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:3.90.226.10 3 206 1.9E-55 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF48179 631 720 5.61E-16 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF48179 503 645 1.02E-17 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF52096 2 303 1.99E-60 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 PANTHER PTHR23309 7 722 0.0 T 19-04-2016 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 PANTHER PTHR23309:SF6 7 722 0.0 T 19-04-2016 AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 SUPERFAMILY SSF51735 320 502 1.08E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7893 d8aa3add5114b4e62fdb3dd56e848d09 723 Gene3D G3DSA:1.10.1040.10 506 605 2.3E-13 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 47 65 3.2E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 67 79 3.2E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 168 181 3.2E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 251 270 3.2E-15 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PANTHER PTHR11482 4 376 9.0E-93 T 19-04-2016 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 Gene3D G3DSA:3.20.20.10 31 245 4.4E-56 T 19-04-2016 IPR029066 PLP-binding barrel AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 SUPERFAMILY SSF51419 18 263 2.8E-55 T 19-04-2016 IPR029066 PLP-binding barrel AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 Gene3D G3DSA:2.40.37.10 246 376 2.6E-26 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 119 141 6.8E-15 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 318 328 6.8E-15 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 89 113 6.8E-15 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PRINTS PR01182 Ornithine decarboxylase signature 45 72 6.8E-15 T 19-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 PANTHER PTHR11482:SF6 4 376 9.0E-93 T 19-04-2016 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 SUPERFAMILY SSF50621 236 376 2.93E-30 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 41 261 5.6E-43 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 268 371 1.5E-13 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_5152 ef04cebc562875cc0dd90dab4ec35e9e 384 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 47 65 - T 19-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 AMED_4438 a8988f7914a4a1ec82a53321e56a8dfe 342 SUPERFAMILY SSF51126 24 339 2.02E-65 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4438 a8988f7914a4a1ec82a53321e56a8dfe 342 PANTHER PTHR31321 14 334 5.4E-78 T 19-04-2016 AMED_4438 a8988f7914a4a1ec82a53321e56a8dfe 342 Gene3D G3DSA:2.160.20.10 27 339 4.8E-89 T 19-04-2016 IPR012334 Pectin lyase fold AMED_4438 a8988f7914a4a1ec82a53321e56a8dfe 342 ProSitePatterns PS00503 Pectinesterase signature 2. 189 198 - T 19-04-2016 IPR033131 Pectinesterase, Asp active site KEGG: 00040+3.1.1.11|KEGG: 00500+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248|UniPathway: UPA00545 AMED_4438 a8988f7914a4a1ec82a53321e56a8dfe 342 PANTHER PTHR31321:SF1 14 334 5.4E-78 T 19-04-2016 AMED_4438 a8988f7914a4a1ec82a53321e56a8dfe 342 Pfam PF01095 Pectinesterase 29 333 6.5E-46 T 19-04-2016 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|KEGG: 00500+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248|UniPathway: UPA00545 AMED_6144 f3f2a9b0e0c200da953d993af0949e7c 385 PANTHER PTHR30482 3 381 2.3E-116 T 19-04-2016 AMED_6144 f3f2a9b0e0c200da953d993af0949e7c 385 PANTHER PTHR30482:SF10 3 381 2.3E-116 T 19-04-2016 AMED_6144 f3f2a9b0e0c200da953d993af0949e7c 385 Pfam PF02653 Branched-chain amino acid transport system / permease component 67 341 9.7E-55 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 PANTHER PTHR30383 9 232 3.7E-62 T 19-04-2016 AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 Gene3D G3DSA:2.80.10.50 243 364 7.0E-43 T 19-04-2016 AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 213 1.4E-15 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 SUPERFAMILY SSF50370 242 364 1.39E-40 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 Pfam PF00652 Ricin-type beta-trefoil lectin domain 243 363 1.3E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 Gene3D G3DSA:3.40.50.1110 25 228 1.1E-30 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 PANTHER PTHR30383:SF2 9 232 3.7E-62 T 19-04-2016 AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 SUPERFAMILY SSF52266 16 228 6.11E-31 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3748 2aa3f3fca33a1c30d0306309c751db57 366 SMART SM00458 237 366 1.8E-32 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3399 406df0e26dfebfdae10fd0782efd73af 300 SUPERFAMILY SSF47240 94 218 5.14E-7 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_3399 406df0e26dfebfdae10fd0782efd73af 300 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 10 284 8.8E-100 T 19-04-2016 IPR025859 P-aminobenzoate N-oxygenase AurF AMED_6346 c5ead4e34806b2d0f902f6809cc3c1de 322 PANTHER PTHR34473 46 296 7.6E-32 T 19-04-2016 AMED_6346 c5ead4e34806b2d0f902f6809cc3c1de 322 Pfam PF03703 Bacterial PH domain 234 298 8.3E-7 T 19-04-2016 IPR005182 Domain of unknown function DUF304 AMED_6346 c5ead4e34806b2d0f902f6809cc3c1de 322 PANTHER PTHR34473:SF1 46 296 7.6E-32 T 19-04-2016 AMED_5460 5ce2802474036e42b257a6163bec82db 551 PANTHER PTHR11814 24 545 4.7E-106 T 19-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 AMED_5460 5ce2802474036e42b257a6163bec82db 551 SUPERFAMILY SSF52091 434 536 1.14E-12 T 19-04-2016 IPR002645 STAS domain AMED_5460 5ce2802474036e42b257a6163bec82db 551 Pfam PF00916 Sulfate permease family 24 387 3.9E-63 T 19-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMED_5460 5ce2802474036e42b257a6163bec82db 551 PANTHER PTHR11814:SF112 24 545 4.7E-106 T 19-04-2016 AMED_5460 5ce2802474036e42b257a6163bec82db 551 Gene3D G3DSA:3.30.750.24 434 535 2.3E-12 T 19-04-2016 IPR002645 STAS domain AMED_5460 5ce2802474036e42b257a6163bec82db 551 Pfam PF01740 STAS domain 431 532 4.8E-12 T 19-04-2016 IPR002645 STAS domain AMED_4974 1f400c45f5dcbe6fe2b15efd33f9be23 347 Pfam PF00571 CBS domain 217 271 2.4E-6 T 19-04-2016 IPR000644 CBS domain AMED_4974 1f400c45f5dcbe6fe2b15efd33f9be23 347 Pfam PF01595 Domain of unknown function DUF21 9 202 1.1E-42 T 19-04-2016 IPR002550 Domain of unknown function DUF21 AMED_4974 1f400c45f5dcbe6fe2b15efd33f9be23 347 SUPERFAMILY SSF54631 213 342 7.71E-22 T 19-04-2016 AMED_4974 1f400c45f5dcbe6fe2b15efd33f9be23 347 PANTHER PTHR22777 3 341 2.8E-108 T 19-04-2016 AMED_4974 1f400c45f5dcbe6fe2b15efd33f9be23 347 PANTHER PTHR22777:SF18 3 341 2.8E-108 T 19-04-2016 AMED_4974 1f400c45f5dcbe6fe2b15efd33f9be23 347 Gene3D G3DSA:3.10.580.10 210 340 3.3E-15 T 19-04-2016 AMED_2349 7967cafa40166e7b8158732601ef211b 621 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_2349 7967cafa40166e7b8158732601ef211b 621 PANTHER PTHR21000 1 617 0.0 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_2349 7967cafa40166e7b8158732601ef211b 621 SUPERFAMILY SSF52016 418 600 7.85E-57 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_2349 7967cafa40166e7b8158732601ef211b 621 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 2 601 5.8E-293 T 19-04-2016 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12|UniPathway: UPA00226 AMED_2349 7967cafa40166e7b8158732601ef211b 621 SUPERFAMILY SSF143975 1 417 4.71E-144 T 19-04-2016 AMED_2349 7967cafa40166e7b8158732601ef211b 621 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_2349 7967cafa40166e7b8158732601ef211b 621 Pfam PF00920 Dehydratase family 66 598 8.7E-164 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_2349 7967cafa40166e7b8158732601ef211b 621 PANTHER PTHR21000:SF9 1 617 0.0 T 19-04-2016 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 298 325 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 144 160 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 326 341 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 198 220 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 356 367 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 161 176 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 347 356 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 97 108 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00359 B-class P450 signature 280 291 8.6E-53 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 Gene3D G3DSA:1.10.630.10 19 407 1.4E-109 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 356 367 3.2E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 347 356 3.2E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 280 291 3.2E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PRINTS PR00385 P450 superfamily signature 243 260 3.2E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 Pfam PF00067 Cytochrome P450 281 373 4.0E-18 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 PANTHER PTHR11712 28 407 7.4E-87 T 19-04-2016 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 349 358 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_7228 d243382c35b6a44abaf9f4ce3349f060 407 SUPERFAMILY SSF48264 21 407 1.44E-82 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4385 071c5c9db23653fddc050a97a459ec68 217 Pfam PF12840 Helix-turn-helix domain 10 69 7.3E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4385 071c5c9db23653fddc050a97a459ec68 217 Gene3D G3DSA:1.10.10.10 21 85 8.8E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4385 071c5c9db23653fddc050a97a459ec68 217 SUPERFAMILY SSF46785 7 192 3.0E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00385 P450 superfamily signature 366 377 9.9E-9 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00385 P450 superfamily signature 357 366 9.9E-9 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00385 P450 superfamily signature 291 302 9.9E-9 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00385 P450 superfamily signature 256 273 9.9E-9 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 SUPERFAMILY SSF48264 27 417 3.41E-94 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 359 368 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 Pfam PF00067 Cytochrome P450 102 387 5.4E-25 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PANTHER PTHR11712 9 418 3.8E-90 T 19-04-2016 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 Gene3D G3DSA:1.10.630.10 23 418 2.4E-122 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 173 188 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 210 232 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 109 120 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 309 336 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 291 302 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 156 172 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 357 366 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0653 739dd9a3c7f256048889f3f8ca2dace4 420 PRINTS PR00359 B-class P450 signature 366 377 2.0E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 SUPERFAMILY SSF140490 326 419 1.96E-35 T 19-04-2016 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 SUPERFAMILY SSF142019 7 239 6.02E-86 T 19-04-2016 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 PANTHER PTHR11780 5 421 3.5E-214 T 19-04-2016 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 PANTHER PTHR11780:SF10 5 421 3.5E-214 T 19-04-2016 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 167 182 - T 19-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 341 352 - T 19-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 Gene3D G3DSA:3.10.560.10 243 275 2.6E-4 T 19-04-2016 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 48 217 1.6E-47 T 19-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 Pfam PF10531 SLBB domain 243 290 2.4E-10 T 19-04-2016 IPR019554 Soluble ligand binding domain AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 9 412 5.7E-188 T 19-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 SMART SM00928 328 373 2.1E-24 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 SUPERFAMILY SSF142984 241 323 6.54E-23 T 19-04-2016 AMED_0525 79bc2f7e7f6c13759374d2389d798f43 431 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 411 1.0E-32 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 522 2.5E-18 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 PANTHER PTHR24096:SF53 1 529 9.5E-247 T 19-04-2016 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 Gene3D G3DSA:3.40.50.980 46 189 5.8E-29 T 19-04-2016 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 Gene3D G3DSA:3.40.50.980 190 341 1.2E-36 T 19-04-2016 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 Pfam PF00501 AMP-binding enzyme 31 438 2.2E-89 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 SUPERFAMILY SSF56801 9 535 3.79E-139 T 19-04-2016 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 Gene3D G3DSA:2.30.38.10 356 432 1.7E-17 T 19-04-2016 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 Gene3D G3DSA:3.30.300.30 433 532 1.3E-29 T 19-04-2016 AMED_8406 75c22918cc0c1457b8bf4501f0a668be 542 PANTHER PTHR24096 1 529 9.5E-247 T 19-04-2016 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 SUPERFAMILY SSF48264 76 282 1.7E-29 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PRINTS PR00463 E-class P450 group I signature 241 264 3.6E-6 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PRINTS PR00463 E-class P450 group I signature 231 241 3.6E-6 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PRINTS PR00463 E-class P450 group I signature 200 224 3.6E-6 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 Pfam PF00067 Cytochrome P450 161 266 1.8E-21 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 PANTHER PTHR24305 161 292 4.5E-20 T 19-04-2016 AMED_5553 d1c9ab2fadbcfe7fe1961da88e91ed88 297 Gene3D G3DSA:1.10.630.10 69 291 5.7E-31 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF50447 219 302 1.06E-16 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:2.40.30.10 322 410 1.5E-7 T 19-04-2016 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Pfam PF00009 Elongation factor Tu GTP binding domain 3 187 2.0E-42 T 19-04-2016 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:3.40.50.300 417 600 6.2E-76 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:3.40.50.300 3 208 3.4E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 100 111 1.6E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.6E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 64 72 1.6E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 84 94 1.6E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 PRINTS PR00315 GTP-binding elongation factor signature 5 18 1.6E-13 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 420 592 3.4E-66 T 19-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Pfam PF01583 Adenylylsulphate kinase 432 582 9.5E-69 T 19-04-2016 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 PANTHER PTHR11055 417 603 7.7E-113 T 19-04-2016 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF52540 430 602 2.09E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF50465 306 410 1.12E-28 T 19-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 SUPERFAMILY SSF52540 4 203 2.01E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 431 603 35.846 T 19-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 4 409 1.5E-164 T 19-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 AMED_2845 829a2402409f340d9d0f9f8fa96fa0db 603 Gene3D G3DSA:2.40.30.10 219 321 3.3E-15 T 19-04-2016 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 Gene3D G3DSA:3.20.20.240 54 484 3.3E-131 T 19-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 PANTHER PTHR23408 51 593 7.6E-90 T 19-04-2016 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 Gene3D G3DSA:3.40.50.280 485 607 6.2E-43 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 Pfam PF01642 Methylmalonyl-CoA mutase 55 526 2.2E-128 T 19-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 Gene3D G3DSA:1.10.196.20 11 36 1.0E-11 T 19-04-2016 IPR024067 Methylmalonyl-CoA mutase small subunit, N-terminal KEGG: 00280+5.4.99.2|KEGG: 00630+5.4.99.2|KEGG: 00640+5.4.99.2|KEGG: 00720+5.4.99.2|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|UniPathway: UPA00945 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 SUPERFAMILY SSF51703 13 532 2.04E-153 T 19-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 AMED_0913 e05aa9cc7958d360634d0765f595944b 608 PANTHER PTHR23408:SF13 51 593 7.6E-90 T 19-04-2016 AMED_3749 f0f69def03b22f7441b7b369b5294029 359 SUPERFAMILY SSF46785 7 58 4.21E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3749 f0f69def03b22f7441b7b369b5294029 359 Gene3D G3DSA:3.30.420.40 198 326 1.8E-30 T 19-04-2016 AMED_3749 f0f69def03b22f7441b7b369b5294029 359 PANTHER PTHR18964:SF123 45 302 1.9E-48 T 19-04-2016 AMED_3749 f0f69def03b22f7441b7b369b5294029 359 SUPERFAMILY SSF53067 66 350 7.26E-38 T 19-04-2016 AMED_3749 f0f69def03b22f7441b7b369b5294029 359 Gene3D G3DSA:3.30.420.40 64 197 4.5E-34 T 19-04-2016 AMED_3749 f0f69def03b22f7441b7b369b5294029 359 Gene3D G3DSA:1.10.10.10 2 61 3.7E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3749 f0f69def03b22f7441b7b369b5294029 359 Pfam PF00480 ROK family 69 318 3.7E-38 T 19-04-2016 IPR000600 ROK family AMED_3749 f0f69def03b22f7441b7b369b5294029 359 PANTHER PTHR18964 45 302 1.9E-48 T 19-04-2016 AMED_4732 9c67975ff6d1630ca113767f1360bbbb 255 PANTHER PTHR10859 1 233 8.5E-72 T 19-04-2016 AMED_4732 9c67975ff6d1630ca113767f1360bbbb 255 Pfam PF00535 Glycosyl transferase family 2 16 180 1.9E-30 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_4732 9c67975ff6d1630ca113767f1360bbbb 255 SUPERFAMILY SSF53448 14 233 4.13E-44 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4732 9c67975ff6d1630ca113767f1360bbbb 255 Gene3D G3DSA:3.90.550.10 14 234 3.6E-27 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 ProDom PD039135 WALL-ASSOCIATED REPEAT PROTEIN CELL WALL HYDROLASE PRECURSOR SIGNAL TRANSMEMBRANE RETICULOCYTE 62 255 3.0E-5 T 19-04-2016 AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1359 1520 4.5E-28 T 19-04-2016 AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 SUPERFAMILY SSF49899 1313 1526 9.29E-35 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 SMART SM00560 1376 1517 2.8E-15 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 Gene3D G3DSA:2.60.120.200 1351 1526 2.0E-33 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 SUPERFAMILY SSF52266 1537 1688 1.05E-6 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7350 600a1b6fbdaecddc54e8a7ee3fc96b20 1697 Gene3D G3DSA:3.40.50.1110 1537 1688 3.3E-8 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SUPERFAMILY SSF48452 473 617 1.59E-17 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 Pfam PF00931 NB-ARC domain 55 294 2.5E-9 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 PANTHER PTHR22845:SF4 13 375 1.3E-43 T 19-04-2016 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 Gene3D G3DSA:3.40.50.300 38 153 5.0E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 PRINTS PR00364 Disease resistance protein signature 224 238 1.1E-9 T 19-04-2016 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 PRINTS PR00364 Disease resistance protein signature 60 75 1.1E-9 T 19-04-2016 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 PRINTS PR00364 Disease resistance protein signature 137 151 1.1E-9 T 19-04-2016 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 513 546 11.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 593 626 160.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 553 586 440.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 633 666 160.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SMART SM00028 473 506 47.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 SUPERFAMILY SSF52540 34 289 6.83E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 Gene3D G3DSA:1.25.40.10 456 673 1.0E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 Pfam PF13424 Tetratricopeptide repeat 597 663 2.4E-7 T 19-04-2016 AMED_6361 01e504aee2c62a51b7d63c32898ecf7d 680 PANTHER PTHR22845 13 375 1.3E-43 T 19-04-2016 AMED_0211 572a2e95d4761e15879731e8a1895f73 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 180 8.9E-7 T 19-04-2016 AMED_0211 572a2e95d4761e15879731e8a1895f73 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 239 4.9E-65 T 19-04-2016 AMED_0211 572a2e95d4761e15879731e8a1895f73 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PANTHER PTHR24321:SF6 3 241 3.0E-48 T 19-04-2016 AMED_0211 572a2e95d4761e15879731e8a1895f73 241 SUPERFAMILY SSF51735 5 240 1.37E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 6.1E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 6.1E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 6.1E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.1E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.1E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 6.1E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 Gene3D G3DSA:3.40.50.720 3 240 5.8E-84 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PANTHER PTHR24321 3 241 3.0E-48 T 19-04-2016 AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0211 572a2e95d4761e15879731e8a1895f73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 1.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3765 765417e049ffcfb6b2e3bb03dbb40ba9 279 SUPERFAMILY SSF52266 71 255 3.66E-15 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3765 765417e049ffcfb6b2e3bb03dbb40ba9 279 Gene3D G3DSA:3.40.50.1110 72 257 1.3E-10 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7902 d9dc5156b2892e8bafccce0d82362669 401 PANTHER PTHR36840 11 396 2.3E-36 T 19-04-2016 AMED_7902 d9dc5156b2892e8bafccce0d82362669 401 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 16 381 2.7E-97 T 19-04-2016 IPR010640 Low temperature requirement A AMED_7902 d9dc5156b2892e8bafccce0d82362669 401 PANTHER PTHR36840:SF1 11 396 2.3E-36 T 19-04-2016 AMED_5792 c572475d07c4523e22f46f6014581d42 236 SUPERFAMILY SSF51197 7 224 5.1E-36 T 19-04-2016 AMED_5792 c572475d07c4523e22f46f6014581d42 236 Gene3D G3DSA:3.60.130.10 9 224 7.2E-34 T 19-04-2016 AMED_5792 c572475d07c4523e22f46f6014581d42 236 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 172 222 2.9E-12 T 19-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 AMED_5792 c572475d07c4523e22f46f6014581d42 236 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 8 125 3.0E-11 T 19-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 AMED_5792 c572475d07c4523e22f46f6014581d42 236 PANTHER PTHR10696 12 221 2.0E-17 T 19-04-2016 AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SUPERFAMILY SSF51126 355 488 2.62E-26 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SUPERFAMILY SSF51126 17 118 2.62E-26 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SUPERFAMILY SSF51126 518 637 2.62E-26 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_3293 2065eaa2725930b65ad87d8118629a41 787 PANTHER PTHR36453 9 334 9.0E-74 T 19-04-2016 AMED_3293 2065eaa2725930b65ad87d8118629a41 787 PANTHER PTHR36453 358 602 9.0E-74 T 19-04-2016 AMED_3293 2065eaa2725930b65ad87d8118629a41 787 Gene3D G3DSA:2.80.10.50 662 786 2.1E-39 T 19-04-2016 AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SUPERFAMILY SSF50370 659 786 1.05E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3293 2065eaa2725930b65ad87d8118629a41 787 Gene3D G3DSA:2.160.20.10 352 655 2.9E-10 T 19-04-2016 IPR012334 Pectin lyase fold AMED_3293 2065eaa2725930b65ad87d8118629a41 787 Gene3D G3DSA:2.160.20.10 17 219 2.1E-14 T 19-04-2016 IPR012334 Pectin lyase fold AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 465 486 160.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 400 422 4.2 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 547 570 3300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 365 387 960.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 149 170 760.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 572 611 3300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00710 437 464 2200.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_3293 2065eaa2725930b65ad87d8118629a41 787 PANTHER PTHR36453:SF1 9 334 9.0E-74 T 19-04-2016 AMED_3293 2065eaa2725930b65ad87d8118629a41 787 PANTHER PTHR36453:SF1 358 602 9.0E-74 T 19-04-2016 AMED_3293 2065eaa2725930b65ad87d8118629a41 787 SMART SM00458 658 787 3.2E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3293 2065eaa2725930b65ad87d8118629a41 787 Pfam PF00652 Ricin-type beta-trefoil lectin domain 659 784 4.1E-29 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3293 2065eaa2725930b65ad87d8118629a41 787 Pfam PF13229 Right handed beta helix region 359 529 6.4E-6 T 19-04-2016 AMED_1842 3b20fd97b758fc333a2e8c1b943f553d 283 PANTHER PTHR21240 1 283 6.1E-67 T 19-04-2016 AMED_1842 3b20fd97b758fc333a2e8c1b943f553d 283 PANTHER PTHR21240:SF1 1 283 6.1E-67 T 19-04-2016 AMED_1842 3b20fd97b758fc333a2e8c1b943f553d 283 SUPERFAMILY SSF51556 2 274 1.62E-67 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1842 3b20fd97b758fc333a2e8c1b943f553d 283 Pfam PF04909 Amidohydrolase 2 273 5.5E-40 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_1842 3b20fd97b758fc333a2e8c1b943f553d 283 Gene3D G3DSA:3.20.20.140 1 275 5.4E-74 T 19-04-2016 AMED_8669 863bf59e846ebbfc4f72d50689a77ab1 480 SUPERFAMILY SSF53756 12 474 3.23E-145 T 19-04-2016 AMED_8669 863bf59e846ebbfc4f72d50689a77ab1 480 Gene3D G3DSA:3.40.50.2000 263 460 1.1E-72 T 19-04-2016 AMED_8669 863bf59e846ebbfc4f72d50689a77ab1 480 PANTHER PTHR10788:SF6 4 474 1.3E-181 T 19-04-2016 AMED_8669 863bf59e846ebbfc4f72d50689a77ab1 480 PANTHER PTHR10788 4 474 1.3E-181 T 19-04-2016 AMED_8669 863bf59e846ebbfc4f72d50689a77ab1 480 Pfam PF00982 Glycosyltransferase family 20 13 474 3.9E-152 T 19-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 AMED_8669 863bf59e846ebbfc4f72d50689a77ab1 480 Gene3D G3DSA:3.40.50.2000 12 262 9.7E-85 T 19-04-2016 AMED_4803 822a00d1481e58c4a29a212bd0992538 402 Gene3D G3DSA:3.30.470.20 109 309 2.9E-17 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_4803 822a00d1481e58c4a29a212bd0992538 402 Pfam PF02655 ATP-grasp domain 112 283 1.3E-6 T 19-04-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 AMED_4803 822a00d1481e58c4a29a212bd0992538 402 SUPERFAMILY SSF56059 95 310 6.68E-28 T 19-04-2016 AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 PANTHER PTHR22916:SF3 356 503 7.8E-18 T 19-04-2016 AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 PANTHER PTHR22916:SF3 141 329 7.8E-18 T 19-04-2016 AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 Pfam PF13641 Glycosyltransferase like family 2 180 434 5.0E-32 T 19-04-2016 AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 PANTHER PTHR22916 356 503 7.8E-18 T 19-04-2016 AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 PANTHER PTHR22916 141 329 7.8E-18 T 19-04-2016 AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 SUPERFAMILY SSF53448 354 468 4.95E-28 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 SUPERFAMILY SSF53448 180 318 4.95E-28 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0232 64d94999de24525ad9bb5459f8ca28ae 639 Gene3D G3DSA:3.90.550.10 182 417 7.2E-15 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4356 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 Gene3D G3DSA:2.60.200.20 11 95 5.4E-24 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_4356 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 SUPERFAMILY SSF49879 12 95 1.72E-25 T 19-04-2016 IPR008984 SMAD/FHA domain GO:0005515 AMED_4356 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 PANTHER PTHR15715 15 89 2.5E-12 T 19-04-2016 AMED_4356 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 SMART SM00240 22 72 2.6E-12 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_4356 5d88eb0dcfb31f826f5e96ef0fcc5fd2 256 Pfam PF00498 FHA domain 23 89 1.8E-17 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_4260 fd40d06a0130168bbb01723e282aa885 147 Pfam PF14325 Domain of unknown function (DUF4383) 18 133 8.8E-28 T 19-04-2016 IPR025492 Protein of unknown function DUF4383 AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 20 229 3.4E-81 T 19-04-2016 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 Gene3D G3DSA:3.40.50.300 57 135 3.8E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 Gene3D G3DSA:3.40.50.300 171 215 7.8E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 PANTHER PTHR30134:SF2 12 231 1.4E-109 T 19-04-2016 AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 50 209 5.5E-32 T 19-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 SUPERFAMILY SSF52540 26 228 5.79E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 PIRSF PIRSF005624 14 232 6.6E-90 T 19-04-2016 AMED_3785 09839976e596b8f6cc4cd6c6be78448b 232 PANTHER PTHR30134 12 231 1.4E-109 T 19-04-2016 AMED_4280 216490627a7e87c461f917d7f22f08f2 313 Pfam PF00534 Glycosyl transferases group 1 198 289 7.0E-9 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_4280 216490627a7e87c461f917d7f22f08f2 313 Gene3D G3DSA:3.40.50.2000 192 289 7.2E-5 T 19-04-2016 AMED_4280 216490627a7e87c461f917d7f22f08f2 313 SUPERFAMILY SSF53756 47 308 1.62E-19 T 19-04-2016 AMED_7224 8298f08d7903cbb48a3a1f3137655330 54 Gene3D G3DSA:3.40.50.920 1 53 5.0E-8 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_7224 8298f08d7903cbb48a3a1f3137655330 54 SUPERFAMILY SSF52922 1 53 1.26E-5 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 PANTHER PTHR19211 16 279 2.5E-110 T 19-04-2016 AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 PANTHER PTHR19211 300 524 2.5E-110 T 19-04-2016 AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 Gene3D G3DSA:3.40.50.300 8 103 9.8E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 Gene3D G3DSA:3.40.50.300 375 538 1.7E-25 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 Gene3D G3DSA:3.40.50.300 138 282 9.8E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 SMART SM00382 377 539 8.8E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 SMART SM00382 31 234 4.2E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 SUPERFAMILY SSF52540 7 232 9.94E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 SUPERFAMILY SSF52540 373 541 1.33E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 Pfam PF00005 ABC transporter 22 190 3.5E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 Pfam PF00005 ABC transporter 373 494 2.1E-17 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4929 4b05df4d54cd68ae17e2a78d46538907 543 ProSitePatterns PS00211 ABC transporters family signature. 466 480 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0011 b30410bf1617121e209586ffbf975509 71 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 11 57 8.1E-9 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_0011 b30410bf1617121e209586ffbf975509 71 Pfam PF12728 Helix-turn-helix domain 10 57 4.5E-10 T 19-04-2016 AMED_5075 407a5cecd8859b9a2dfcdf06a548c89c 325 Gene3D G3DSA:3.40.190.10 115 233 5.2E-13 T 19-04-2016 AMED_5075 407a5cecd8859b9a2dfcdf06a548c89c 325 SUPERFAMILY SSF53850 24 253 2.78E-36 T 19-04-2016 AMED_5075 407a5cecd8859b9a2dfcdf06a548c89c 325 PANTHER PTHR31528 1 325 9.9E-66 T 19-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 AMED_5075 407a5cecd8859b9a2dfcdf06a548c89c 325 Pfam PF09084 NMT1/THI5 like 36 248 1.1E-49 T 19-04-2016 IPR015168 SsuA/THI5-like AMED_6692 d8b77c9f425bf5c14f9544f9de078ace 242 SUPERFAMILY SSF52266 3 88 1.83E-12 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6692 d8b77c9f425bf5c14f9544f9de078ace 242 SUPERFAMILY SSF52266 131 229 1.83E-12 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6692 d8b77c9f425bf5c14f9544f9de078ace 242 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 7 222 2.5E-8 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6692 d8b77c9f425bf5c14f9544f9de078ace 242 Gene3D G3DSA:3.40.50.1110 2 85 2.5E-9 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6692 d8b77c9f425bf5c14f9544f9de078ace 242 Gene3D G3DSA:3.40.50.1110 127 233 2.5E-9 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PANTHER PTHR20854:SF4 13 268 2.8E-40 T 19-04-2016 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 Gene3D G3DSA:3.30.540.10 18 169 4.3E-33 T 19-04-2016 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 75 91 1.9E-27 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 97 113 1.9E-27 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 53 73 1.9E-27 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 146 169 1.9E-27 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 191 212 1.9E-27 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 222 246 1.9E-27 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 Pfam PF00459 Inositol monophosphatase family 21 266 1.6E-41 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 SUPERFAMILY SSF56655 18 273 2.09E-51 T 19-04-2016 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 Gene3D G3DSA:3.40.190.80 170 273 1.3E-16 T 19-04-2016 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 225 239 - T 19-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMED_0513 2d9ce89d4aa3adedb6e201b18bfb83cd 276 PANTHER PTHR20854 13 268 2.8E-40 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMED_4491 fa6aa29fad796c044b4af1a82c7c66ec 288 Gene3D G3DSA:2.60.200.30 137 250 7.1E-30 T 19-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4491 fa6aa29fad796c044b4af1a82c7c66ec 288 SUPERFAMILY SSF111331 14 276 5.36E-61 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_4491 fa6aa29fad796c044b4af1a82c7c66ec 288 PANTHER PTHR20275 52 275 3.9E-56 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4491 fa6aa29fad796c044b4af1a82c7c66ec 288 Gene3D G3DSA:3.40.50.10330 51 136 1.7E-22 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4491 fa6aa29fad796c044b4af1a82c7c66ec 288 Pfam PF01513 ATP-NAD kinase 49 260 1.0E-43 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4491 fa6aa29fad796c044b4af1a82c7c66ec 288 Hamap MF_00361 NAD kinase [nadK]. 2 276 26.283 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_4195 363708181d62f2a1cb251a768dc25e34 245 SMART SM00065 29 181 7.3E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4195 363708181d62f2a1cb251a768dc25e34 245 SUPERFAMILY SSF55781 35 180 5.67E-24 T 19-04-2016 IPR029016 GAF domain-like AMED_4195 363708181d62f2a1cb251a768dc25e34 245 Gene3D G3DSA:3.30.450.40 22 180 5.6E-22 T 19-04-2016 IPR029016 GAF domain-like AMED_4195 363708181d62f2a1cb251a768dc25e34 245 Pfam PF03861 ANTAR domain 187 238 4.8E-13 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4195 363708181d62f2a1cb251a768dc25e34 245 Gene3D G3DSA:1.10.10.10 187 239 2.8E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4195 363708181d62f2a1cb251a768dc25e34 245 SMART SM01012 183 238 3.9E-13 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4195 363708181d62f2a1cb251a768dc25e34 245 PIRSF PIRSF036625 1 242 6.3E-38 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_4195 363708181d62f2a1cb251a768dc25e34 245 SUPERFAMILY SSF52172 154 237 4.08E-7 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4195 363708181d62f2a1cb251a768dc25e34 245 Pfam PF13185 GAF domain 33 171 6.4E-13 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_7078 8bbd7d974aedf587da533041a1890074 440 PIRSF PIRSF037226 36 433 1.3E-121 T 19-04-2016 IPR017144 Peptidase M20A, amidohydrolase, predicted AMED_7078 8bbd7d974aedf587da533041a1890074 440 Gene3D G3DSA:3.30.70.360 204 311 6.6E-26 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_7078 8bbd7d974aedf587da533041a1890074 440 SUPERFAMILY SSF53187 46 219 1.65E-53 T 19-04-2016 AMED_7078 8bbd7d974aedf587da533041a1890074 440 SUPERFAMILY SSF53187 320 416 1.65E-53 T 19-04-2016 AMED_7078 8bbd7d974aedf587da533041a1890074 440 PANTHER PTHR30575 34 436 2.7E-130 T 19-04-2016 AMED_7078 8bbd7d974aedf587da533041a1890074 440 SUPERFAMILY SSF55031 204 311 3.27E-23 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_7078 8bbd7d974aedf587da533041a1890074 440 PANTHER PTHR30575:SF0 34 436 2.7E-130 T 19-04-2016 AMED_7078 8bbd7d974aedf587da533041a1890074 440 Pfam PF07687 Peptidase dimerisation domain 207 299 5.3E-9 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_7078 8bbd7d974aedf587da533041a1890074 440 Gene3D G3DSA:3.40.630.10 317 427 1.3E-58 T 19-04-2016 AMED_7078 8bbd7d974aedf587da533041a1890074 440 Gene3D G3DSA:3.40.630.10 40 203 1.3E-58 T 19-04-2016 AMED_7078 8bbd7d974aedf587da533041a1890074 440 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 58 388 8.9E-73 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_6276 8e0ef0e315e69795529f013d7e2aaa21 186 SUPERFAMILY SSF55729 6 178 1.51E-44 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6276 8e0ef0e315e69795529f013d7e2aaa21 186 Gene3D G3DSA:3.40.630.30 7 184 5.0E-51 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6276 8e0ef0e315e69795529f013d7e2aaa21 186 PANTHER PTHR13256:SF43 1 185 1.8E-49 T 19-04-2016 AMED_6276 8e0ef0e315e69795529f013d7e2aaa21 186 PANTHER PTHR13256 1 185 1.8E-49 T 19-04-2016 AMED_6276 8e0ef0e315e69795529f013d7e2aaa21 186 Pfam PF13302 Acetyltransferase (GNAT) domain 12 154 2.8E-31 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_9172 511aae6771f43a9a57903465040ee863 187 SUPERFAMILY SSF48498 94 184 6.67E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_9172 511aae6771f43a9a57903465040ee863 187 PANTHER PTHR30055:SF2 5 184 1.8E-20 T 19-04-2016 AMED_9172 511aae6771f43a9a57903465040ee863 187 Gene3D G3DSA:1.10.357.10 14 185 6.9E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9172 511aae6771f43a9a57903465040ee863 187 PANTHER PTHR30055 5 184 1.8E-20 T 19-04-2016 AMED_9172 511aae6771f43a9a57903465040ee863 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 4.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9172 511aae6771f43a9a57903465040ee863 187 SUPERFAMILY SSF46689 9 85 2.05E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 Gene3D G3DSA:3.30.160.20 153 220 4.4E-25 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 SMART SM00535 12 148 1.5E-50 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 SMART SM00358 155 221 3.0E-23 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 ProSitePatterns PS00517 Ribonuclease III family signature. 34 42 - T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 SUPERFAMILY SSF69065 9 156 4.71E-44 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 10 219 1.1E-67 T 19-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 SUPERFAMILY SSF54768 109 220 2.83E-25 T 19-04-2016 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 PANTHER PTHR11207 8 220 1.5E-75 T 19-04-2016 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 Hamap MF_00104 Ribonuclease 3 [rnc]. 1 217 29.803 T 19-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 Gene3D G3DSA:1.10.1520.10 10 142 2.2E-42 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 Pfam PF00035 Double-stranded RNA binding motif 155 220 5.5E-15 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMED_1796 2af6d6ad73a55dbc4171995040b4bf2e 234 Pfam PF14622 Ribonuclease-III-like 10 137 1.9E-34 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 SUPERFAMILY SSF63867 320 397 1.06E-17 T 19-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 PANTHER PTHR10192 2 397 4.2E-135 T 19-04-2016 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:2.170.190.11 44 126 2.2E-32 T 19-04-2016 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:3.40.980.10 158 325 2.2E-53 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 172 307 1.5E-28 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Pfam PF00994 Probable molybdopterin binding domain 176 309 9.1E-22 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:3.90.105.10 127 157 5.7E-18 T 19-04-2016 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 SMART SM00852 175 311 5.2E-30 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 SUPERFAMILY SSF63882 2 170 6.15E-51 T 19-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Pfam PF03454 MoeA C-terminal region (domain IV) 324 397 6.4E-16 T 19-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 SUPERFAMILY SSF53218 172 316 9.16E-36 T 19-04-2016 IPR001453 MoaB/Mog domain AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Gene3D G3DSA:2.40.340.10 326 395 6.4E-22 T 19-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_8559 c8bddf8893b9589c7e0df1a17c024e26 397 Pfam PF03453 MoeA N-terminal region (domain I and II) 3 162 1.3E-35 T 19-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 6.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 6.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 6.6E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PANTHER PTHR24322 7 135 7.3E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PANTHER PTHR24322 151 183 7.3E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 242 4.2E-57 T 19-04-2016 AMED_3471 ba4867222b48899e07feabd95a518104 258 PANTHER PTHR24322:SF390 7 135 7.3E-51 T 19-04-2016 AMED_3471 ba4867222b48899e07feabd95a518104 258 PANTHER PTHR24322:SF390 151 183 7.3E-51 T 19-04-2016 AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 4.9E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.9E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 4.9E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3471 ba4867222b48899e07feabd95a518104 258 SUPERFAMILY SSF51735 3 245 2.64E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3471 ba4867222b48899e07feabd95a518104 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3471 ba4867222b48899e07feabd95a518104 258 Gene3D G3DSA:3.40.50.720 3 245 1.2E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3471 ba4867222b48899e07feabd95a518104 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 187 0.0056 T 19-04-2016 AMED_4536 83ac8b3649013e23d46d52379dc20361 120 PANTHER PTHR36849 4 117 5.9E-42 T 19-04-2016 AMED_4536 83ac8b3649013e23d46d52379dc20361 120 Pfam PF04343 Protein of unknown function, DUF488 9 117 2.0E-24 T 19-04-2016 IPR007438 Protein of unknown function DUF488 AMED_4536 83ac8b3649013e23d46d52379dc20361 120 PANTHER PTHR36849:SF1 4 117 5.9E-42 T 19-04-2016 AMED_2681 74a981bdd7ac3e7708037d1b6b0cd5fc 432 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 57 198 3.8E-7 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_2681 74a981bdd7ac3e7708037d1b6b0cd5fc 432 Gene3D G3DSA:3.20.20.80 51 373 3.8E-31 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2681 74a981bdd7ac3e7708037d1b6b0cd5fc 432 SUPERFAMILY SSF51445 45 368 2.41E-35 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 16 148 1.0E-71 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 SUPERFAMILY SSF52304 3 144 3.4E-51 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 PANTHER PTHR21272 1 149 3.7E-58 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 19-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 53.019 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 Gene3D G3DSA:3.40.50.9100 3 143 9.0E-50 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 Pfam PF01220 Dehydroquinase class II 4 139 4.5E-45 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_0654 fa5190c1dd84df422868ee668e4cf30e 151 PIRSF PIRSF001399 1 146 3.7E-49 T 19-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 AMED_2103 15d52a2190ac3abce962962e6d48facb 145 SUPERFAMILY SSF54593 2 142 7.01E-31 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2103 15d52a2190ac3abce962962e6d48facb 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 129 1.8E-9 T 19-04-2016 AMED_2103 15d52a2190ac3abce962962e6d48facb 145 Gene3D G3DSA:3.10.180.10 1 144 6.0E-46 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7500 f7499e70b834031779089e277bad6433 137 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 26 120 1.7E-31 T 19-04-2016 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 AMED_4311 76fd4f857b8fc8365887048b8345d2e6 326 PANTHER PTHR34580 7 230 5.1E-37 T 19-04-2016 AMED_4311 76fd4f857b8fc8365887048b8345d2e6 326 Pfam PF13280 WYL domain 139 309 4.3E-28 T 19-04-2016 IPR026881 WYL domain AMED_4311 76fd4f857b8fc8365887048b8345d2e6 326 PANTHER PTHR34580:SF3 7 230 5.1E-37 T 19-04-2016 AMED_4311 76fd4f857b8fc8365887048b8345d2e6 326 Pfam PF08279 HTH domain 7 62 1.8E-15 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_4311 76fd4f857b8fc8365887048b8345d2e6 326 Gene3D G3DSA:1.10.10.10 1 65 9.5E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4311 76fd4f857b8fc8365887048b8345d2e6 326 SUPERFAMILY SSF46785 4 62 6.94E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3415 acdb4f999be08f286f9115f7aba222f8 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 2.6E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3415 acdb4f999be08f286f9115f7aba222f8 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3415 acdb4f999be08f286f9115f7aba222f8 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 6.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3415 acdb4f999be08f286f9115f7aba222f8 184 PANTHER PTHR30055 1 184 1.3E-18 T 19-04-2016 AMED_3415 acdb4f999be08f286f9115f7aba222f8 184 Gene3D G3DSA:1.10.357.10 9 167 8.9E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3415 acdb4f999be08f286f9115f7aba222f8 184 SUPERFAMILY SSF46689 2 86 3.89E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5450 178346168cdde6f2925cbce941e70100 352 PANTHER PTHR10366:SF367 2 347 1.1E-115 T 19-04-2016 AMED_5450 178346168cdde6f2925cbce941e70100 352 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 278 5.4E-43 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_5450 178346168cdde6f2925cbce941e70100 352 PANTHER PTHR10366 2 347 1.1E-115 T 19-04-2016 AMED_5450 178346168cdde6f2925cbce941e70100 352 SUPERFAMILY SSF51735 1 135 3.04E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5450 178346168cdde6f2925cbce941e70100 352 SUPERFAMILY SSF51735 165 343 3.04E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5450 178346168cdde6f2925cbce941e70100 352 Gene3D G3DSA:3.40.50.720 167 341 1.8E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5450 178346168cdde6f2925cbce941e70100 352 Gene3D G3DSA:3.40.50.720 1 134 1.8E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4067 1eeaf0f1dbba5579114d2c5754602a9a 328 Gene3D G3DSA:3.40.47.10 165 323 6.1E-9 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4067 1eeaf0f1dbba5579114d2c5754602a9a 328 SUPERFAMILY SSF53901 7 309 2.58E-23 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4067 1eeaf0f1dbba5579114d2c5754602a9a 328 PANTHER PTHR34069:SF2 2 327 2.0E-14 T 19-04-2016 AMED_4067 1eeaf0f1dbba5579114d2c5754602a9a 328 PANTHER PTHR34069 2 327 2.0E-14 T 19-04-2016 AMED_4067 1eeaf0f1dbba5579114d2c5754602a9a 328 Gene3D G3DSA:3.40.47.10 5 164 3.3E-17 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0826 86d643e5a12dee5c6572044b5efb5179 193 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 26 176 1.9E-12 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMED_0826 86d643e5a12dee5c6572044b5efb5179 193 SUPERFAMILY SSF48150 7 146 1.66E-14 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_0826 86d643e5a12dee5c6572044b5efb5179 193 Gene3D G3DSA:1.10.340.30 16 138 7.7E-13 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_0826 86d643e5a12dee5c6572044b5efb5179 193 TIGRFAM TIGR03252 TIGR03252: uncharacterized HhH-GPD family protein 4 192 4.1E-88 T 19-04-2016 IPR017658 Conserved hypothetical protein CHP03252, HhH-GPD AMED_7652 2136e360d9836ee270d5d31033c8957e 154 Gene3D G3DSA:3.40.630.30 7 142 1.6E-27 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7652 2136e360d9836ee270d5d31033c8957e 154 PANTHER PTHR13947 20 154 1.1E-20 T 19-04-2016 AMED_7652 2136e360d9836ee270d5d31033c8957e 154 Pfam PF00583 Acetyltransferase (GNAT) family 59 133 1.5E-15 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7652 2136e360d9836ee270d5d31033c8957e 154 SUPERFAMILY SSF55729 6 141 9.43E-26 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 Gene3D G3DSA:3.40.190.10 261 319 5.1E-11 T 19-04-2016 AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 Gene3D G3DSA:3.40.190.10 5 154 5.1E-11 T 19-04-2016 AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 SUPERFAMILY SSF53300 346 523 1.91E-16 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 Pfam PF13531 Bacterial extracellular solute-binding protein 36 294 4.6E-21 T 19-04-2016 AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 Pfam PF00092 von Willebrand factor type A domain 348 524 1.3E-6 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 Gene3D G3DSA:3.40.50.410 347 531 1.2E-12 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 SUPERFAMILY SSF53850 32 314 5.64E-19 T 19-04-2016 AMED_1477 f27adc17cf74bf1b07a2acf528326240 535 SMART SM00327 342 528 0.0064 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7627 1c56569830cf29155f97aec0417089c9 379 PANTHER PTHR10566 88 192 1.4E-30 T 19-04-2016 AMED_7627 1c56569830cf29155f97aec0417089c9 379 PANTHER PTHR10566:SF94 88 192 1.4E-30 T 19-04-2016 AMED_7627 1c56569830cf29155f97aec0417089c9 379 Pfam PF00144 Beta-lactamase 34 349 1.2E-47 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_7627 1c56569830cf29155f97aec0417089c9 379 Gene3D G3DSA:3.40.710.10 10 351 1.6E-56 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_7627 1c56569830cf29155f97aec0417089c9 379 SUPERFAMILY SSF56601 12 351 6.47E-52 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8324 1f9845238040b71b7b68a2be8849aaa5 214 Gene3D G3DSA:3.90.550.10 3 107 5.4E-16 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8324 1f9845238040b71b7b68a2be8849aaa5 214 SUPERFAMILY SSF53448 1 192 2.18E-32 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8324 1f9845238040b71b7b68a2be8849aaa5 214 PANTHER PTHR10859:SF95 1 189 1.6E-43 T 19-04-2016 AMED_8324 1f9845238040b71b7b68a2be8849aaa5 214 PANTHER PTHR10859 1 189 1.6E-43 T 19-04-2016 AMED_8324 1f9845238040b71b7b68a2be8849aaa5 214 Pfam PF00535 Glycosyl transferase family 2 2 121 6.0E-21 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_4346 3e7a3545180d7142187e8c92e1c1a103 410 Pfam PF13416 Bacterial extracellular solute-binding protein 59 356 4.8E-44 T 19-04-2016 AMED_4346 3e7a3545180d7142187e8c92e1c1a103 410 Gene3D G3DSA:3.40.190.10 166 346 6.2E-49 T 19-04-2016 AMED_4346 3e7a3545180d7142187e8c92e1c1a103 410 SUPERFAMILY SSF53850 46 407 1.14E-74 T 19-04-2016 AMED_4346 3e7a3545180d7142187e8c92e1c1a103 410 PANTHER PTHR30061:SF1 7 407 2.6E-64 T 19-04-2016 AMED_4346 3e7a3545180d7142187e8c92e1c1a103 410 PANTHER PTHR30061 7 407 2.6E-64 T 19-04-2016 AMED_4346 3e7a3545180d7142187e8c92e1c1a103 410 Gene3D G3DSA:3.40.190.10 45 165 1.0E-22 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 PANTHER PTHR18866:SF91 3 538 3.6E-248 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:3.30.1490.20 127 198 7.8E-22 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Pfam PF02785 Biotin carboxylase C-terminal domain 333 437 4.3E-29 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_2635 a2ddee0349178078841d3820d2005a11 1182 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 3 1181 0.0 T 19-04-2016 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703|UniPathway: UPA00258|UniPathway: UPA00258 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 PANTHER PTHR18866 3 538 3.6E-248 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SMART SM00796 788 1016 3.6E-114 T 19-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D AMED_2635 a2ddee0349178078841d3820d2005a11 1182 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SMART SM00878 333 437 2.3E-42 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Pfam PF02682 Allophanate hydrolase subunit 1 789 1006 1.5E-48 T 19-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D AMED_2635 a2ddee0349178078841d3820d2005a11 1182 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 446 753 5.7E-79 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SMART SM00797 468 756 2.3E-147 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:3.30.1360.40 788 868 3.0E-25 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:2.40.50.100 1112 1181 1.5E-21 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF50891 621 745 4.93E-29 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 PANTHER PTHR18866:SF91 1093 1181 3.6E-248 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Pfam PF02626 Allophanate hydrolase subunit 2 469 740 1.5E-83 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:2.40.100.10 905 1038 2.4E-42 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:2.40.100.10 620 752 9.6E-29 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:3.40.50.20 2 126 3.3E-44 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF56059 81 343 1.45E-63 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF51246 328 439 3.24E-31 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF50891 905 1032 6.83E-25 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Pfam PF00364 Biotin-requiring enzyme 1107 1181 7.7E-15 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Gene3D G3DSA:3.30.470.20 201 437 4.8E-83 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 PANTHER PTHR18866 1093 1181 3.6E-248 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF51230 1106 1181 3.66E-18 T 19-04-2016 IPR011053 Single hybrid motif AMED_2635 a2ddee0349178078841d3820d2005a11 1182 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 150 164 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 317 1.3E-60 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 108 4.2E-41 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF160467 789 881 1.96E-17 T 19-04-2016 AMED_2635 a2ddee0349178078841d3820d2005a11 1182 SUPERFAMILY SSF52440 2 110 1.73E-43 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_8828 51f2b380b093e5313d87b88772aa2e97 231 Gene3D G3DSA:3.90.79.10 41 201 7.6E-35 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8828 51f2b380b093e5313d87b88772aa2e97 231 SUPERFAMILY SSF55811 30 200 5.15E-29 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8828 51f2b380b093e5313d87b88772aa2e97 231 Pfam PF00293 NUDIX domain 42 162 3.1E-14 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_8828 51f2b380b093e5313d87b88772aa2e97 231 PANTHER PTHR12992 41 202 5.8E-35 T 19-04-2016 AMED_1411 732484ac48a2fe98f8cc971ddc60e99c 405 PANTHER PTHR30582:SF2 86 402 4.4E-63 T 19-04-2016 AMED_1411 732484ac48a2fe98f8cc971ddc60e99c 405 Pfam PF03734 L,D-transpeptidase catalytic domain 250 373 1.8E-10 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_1411 732484ac48a2fe98f8cc971ddc60e99c 405 Gene3D G3DSA:2.40.440.10 248 374 1.8E-15 T 19-04-2016 AMED_1411 732484ac48a2fe98f8cc971ddc60e99c 405 SUPERFAMILY SSF141523 240 373 1.57E-21 T 19-04-2016 AMED_1411 732484ac48a2fe98f8cc971ddc60e99c 405 PANTHER PTHR30582 86 402 4.4E-63 T 19-04-2016 AMED_0073 96d5cd1932582632d04d63053dc400d8 251 SUPERFAMILY SSF51735 10 241 1.18E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 8.2E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 8.2E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 8.2E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 8.2E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 8.2E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 8.2E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0073 96d5cd1932582632d04d63053dc400d8 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_0073 96d5cd1932582632d04d63053dc400d8 251 Gene3D G3DSA:3.40.50.720 6 242 2.1E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0073 96d5cd1932582632d04d63053dc400d8 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 240 5.2E-56 T 19-04-2016 AMED_0073 96d5cd1932582632d04d63053dc400d8 251 PANTHER PTHR24321 7 241 5.1E-50 T 19-04-2016 AMED_1567 4303a017525c7ecf6caf3ac96b5301f5 162 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 11 162 3.8E-57 T 19-04-2016 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit UniPathway: UPA00930 AMED_1567 4303a017525c7ecf6caf3ac96b5301f5 162 Pfam PF01883 Domain of unknown function DUF59 9 64 1.6E-12 T 19-04-2016 IPR002744 Domain of unknown function DUF59 AMED_1567 4303a017525c7ecf6caf3ac96b5301f5 162 SUPERFAMILY SSF117916 8 93 2.42E-20 T 19-04-2016 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 Hamap MF_02034 Glutamate--cysteine ligase EgtA [egtA]. 20 419 30.227 T 19-04-2016 IPR017809 Glutamate--cysteine ligase EgtA, Actinobacteria GO:0004357|GO:0052699 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA01014 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 SUPERFAMILY SSF55931 305 390 2.26E-34 T 19-04-2016 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 SUPERFAMILY SSF55931 36 265 2.26E-34 T 19-04-2016 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 PANTHER PTHR34378:SF2 20 380 3.2E-69 T 19-04-2016 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 TIGRFAM TIGR03444 EgtA_Cys_ligase: ergothioneine biosynthesis glutamate--cysteine ligase EgtA 32 407 9.4E-112 T 19-04-2016 IPR017809 Glutamate--cysteine ligase EgtA, Actinobacteria GO:0004357|GO:0052699 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA01014 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 PIRSF PIRSF017901 4 419 5.7E-90 T 19-04-2016 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 84 348 2.2E-46 T 19-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4964 bf816ea7da9a2aadcb929a705bf6a993 419 PANTHER PTHR34378 20 380 3.2E-69 T 19-04-2016 AMED_5569 e4e30da2a73083cabe512f540e05efb4 331 Gene3D G3DSA:3.20.20.140 8 325 2.3E-82 T 19-04-2016 AMED_5569 e4e30da2a73083cabe512f540e05efb4 331 Pfam PF04909 Amidohydrolase 50 321 1.0E-39 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_5569 e4e30da2a73083cabe512f540e05efb4 331 PANTHER PTHR21240 1 326 1.2E-61 T 19-04-2016 AMED_5569 e4e30da2a73083cabe512f540e05efb4 331 SUPERFAMILY SSF51556 20 325 4.72E-71 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_5569 e4e30da2a73083cabe512f540e05efb4 331 PANTHER PTHR21240:SF17 1 326 1.2E-61 T 19-04-2016 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 343 352 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PANTHER PTHR11712 1 401 3.7E-89 T 19-04-2016 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 Gene3D G3DSA:1.10.630.10 13 401 2.3E-119 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 292 319 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 91 102 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 192 214 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 274 285 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 350 361 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 155 170 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 320 335 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 341 350 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00359 B-class P450 signature 138 154 9.0E-56 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 SUPERFAMILY SSF48264 17 401 7.86E-89 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 350 361 4.9E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 274 285 4.9E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 237 254 4.9E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 PRINTS PR00385 P450 superfamily signature 341 350 4.9E-8 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3473 be2c4d4781f25da9d0270644d6e2f532 401 Pfam PF00067 Cytochrome P450 218 370 1.8E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 Gene3D G3DSA:3.30.565.10 8 240 1.4E-76 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PANTHER PTHR11528 2 633 0.0 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 SUPERFAMILY SSF55874 7 221 3.41E-61 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PANTHER PTHR11528:SF44 2 633 0.0 T 19-04-2016 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 186 4.8E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 SUPERFAMILY SSF110942 514 629 3.92E-31 T 19-04-2016 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PIRSF PIRSF002583 1 633 1.4E-214 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 Pfam PF00183 Hsp90 protein 225 631 5.1E-132 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 SUPERFAMILY SSF54211 233 486 1.44E-94 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 SMART SM00387 30 187 1.0E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 630 30.081 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 175 192 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 29 51 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 8 28 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 125 147 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 96 113 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 78 95 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_4246 1e55a87ee61e431e5dc940c41cc17c81 633 PRINTS PR00775 90kDa heat shock protein signature 198 216 6.7E-58 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_6368 60b84f8c8d80d2dcd9f5a94535bcf91e 248 Pfam PF06314 Acetoacetate decarboxylase (ADC) 12 243 4.2E-70 T 19-04-2016 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMED_6368 60b84f8c8d80d2dcd9f5a94535bcf91e 248 Gene3D G3DSA:2.40.400.10 13 243 9.5E-79 T 19-04-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 AMED_6368 60b84f8c8d80d2dcd9f5a94535bcf91e 248 SUPERFAMILY SSF160104 4 244 5.1E-76 T 19-04-2016 AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 249 1.1E-49 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 SUPERFAMILY SSF53850 32 249 5.5E-50 T 19-04-2016 AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 Gene3D G3DSA:3.40.190.10 211 251 1.0E-30 T 19-04-2016 AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 Gene3D G3DSA:3.40.190.10 33 109 1.0E-30 T 19-04-2016 AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 SMART SM00062 33 252 4.5E-48 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 PANTHER PTHR18966 33 271 7.8E-16 T 19-04-2016 AMED_9066 2e69c1d67331992aae30b4ff4cbe1ebc 272 Gene3D G3DSA:3.40.190.10 110 202 4.8E-15 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 SUPERFAMILY SSF52540 281 409 1.13E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 PANTHER PTHR24106 893 941 1.6E-50 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 PANTHER PTHR24106:SF149 571 667 1.6E-50 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 PANTHER PTHR24106 285 555 1.6E-50 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 PANTHER PTHR24106 571 667 1.6E-50 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 PANTHER PTHR24106:SF149 285 555 1.6E-50 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 PANTHER PTHR24106:SF149 893 941 1.6E-50 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 Pfam PF05729 NACHT domain 286 443 1.3E-19 T 19-04-2016 AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 SUPERFAMILY SSF52058 804 1022 4.31E-11 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_7702 fa88de75a7edbc36b1edca9a4fad708a 1063 Gene3D G3DSA:3.80.10.10 825 1022 4.0E-10 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_6281 73b71f72aaa1bc717bea90100710e6eb 153 Gene3D G3DSA:1.10.260.40 10 83 2.2E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6281 73b71f72aaa1bc717bea90100710e6eb 153 SMART SM00530 13 68 4.9E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_6281 73b71f72aaa1bc717bea90100710e6eb 153 SUPERFAMILY SSF47413 4 71 2.68E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6281 73b71f72aaa1bc717bea90100710e6eb 153 Pfam PF13560 Helix-turn-helix domain 9 70 7.3E-12 T 19-04-2016 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 PANTHER PTHR33154 7 109 6.2E-45 T 19-04-2016 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 56 74 - T 19-04-2016 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 Pfam PF01022 Bacterial regulatory protein, arsR family 37 85 3.4E-16 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 SUPERFAMILY SSF46785 12 109 1.41E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 32 47 7.277591E-23 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 65 7.277591E-23 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 82 97 7.277591E-23 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 7.277591E-23 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 PANTHER PTHR33154:SF4 7 109 6.2E-45 T 19-04-2016 AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 Gene3D G3DSA:1.10.10.10 7 109 1.5E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0760 73c36f6129bcc94b635661ae1834bc05 118 SMART SM00418 30 110 2.8E-33 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7336 ea7f153b0efd71639d9b362c66d5a47f 320 PANTHER PTHR30011 21 301 9.1E-40 T 19-04-2016 AMED_7336 ea7f153b0efd71639d9b362c66d5a47f 320 SUPERFAMILY SSF51679 18 315 3.66E-59 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7336 ea7f153b0efd71639d9b362c66d5a47f 320 Gene3D G3DSA:3.20.20.30 6 314 2.1E-65 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7336 ea7f153b0efd71639d9b362c66d5a47f 320 Pfam PF00296 Luciferase-like monooxygenase 4 252 5.5E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 SUPERFAMILY SSF88946 8 78 2.0E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 Gene3D G3DSA:1.25.40.10 365 410 2.4E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 PANTHER PTHR30173 7 385 1.6E-147 T 19-04-2016 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 Pfam PF04542 Sigma-70 region 2 16 81 8.4E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 PANTHER PTHR30173:SF7 7 385 1.6E-147 T 19-04-2016 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 Pfam PF08281 Sigma-70, region 4 118 165 9.6E-9 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 SUPERFAMILY SSF88659 109 168 2.43E-9 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2019 810615834c600dc09ce12be9f0568e1d 418 Gene3D G3DSA:1.10.10.10 109 168 4.0E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2019 810615834c600dc09ce12be9f0568e1d 418 Gene3D G3DSA:1.10.1740.10 10 81 1.3E-8 T 19-04-2016 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 93 1.7E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF52540 262 523 1.22E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 PANTHER PTHR22845:SF4 138 899 2.3E-50 T 19-04-2016 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 SMART SM00862 18 93 4.5E-12 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 PRINTS PR00364 Disease resistance protein signature 293 308 4.0E-8 T 19-04-2016 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 PRINTS PR00364 Disease resistance protein signature 454 468 4.0E-8 T 19-04-2016 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 PRINTS PR00364 Disease resistance protein signature 372 386 4.0E-8 T 19-04-2016 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF48452 753 891 2.25E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF48452 95 255 1.26E-26 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 Gene3D G3DSA:1.25.40.10 729 914 2.5E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 Pfam PF03704 Bacterial transcriptional activator domain 101 237 1.2E-31 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 SMART SM01043 100 237 3.9E-35 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 Gene3D G3DSA:1.10.10.10 29 96 1.9E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 SUPERFAMILY SSF46894 5 93 1.93E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 PANTHER PTHR22845 138 899 2.3E-50 T 19-04-2016 AMED_8593 03679ed42d852b3971af68a8c4553a9a 915 Pfam PF00931 NB-ARC domain 289 532 9.2E-9 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_7600 77ee5f4115a20ce4ae966fb43ddf1b1e 393 PIRSF PIRSF029171 1 393 1.5E-69 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_7600 77ee5f4115a20ce4ae966fb43ddf1b1e 393 Gene3D G3DSA:3.40.50.1820 84 365 5.1E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7600 77ee5f4115a20ce4ae966fb43ddf1b1e 393 PANTHER PTHR34853 1 393 1.4E-78 T 19-04-2016 AMED_7600 77ee5f4115a20ce4ae966fb43ddf1b1e 393 SUPERFAMILY SSF53474 80 227 5.88E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7600 77ee5f4115a20ce4ae966fb43ddf1b1e 393 SUPERFAMILY SSF53474 307 384 5.88E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7600 77ee5f4115a20ce4ae966fb43ddf1b1e 393 Pfam PF03583 Secretory lipase 132 390 3.5E-55 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 SUPERFAMILY SSF50621 261 417 2.51E-36 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 285 394 1.3E-11 T 19-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PANTHER PTHR11482 4 424 6.7E-89 T 19-04-2016 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 Gene3D G3DSA:3.20.20.10 38 261 4.9E-61 T 19-04-2016 IPR029066 PLP-binding barrel AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 68 85 8.8E-5 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 384 406 8.8E-5 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 156 165 8.8E-5 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 8.8E-5 T 19-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 39 279 1.3E-40 T 19-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 50 68 4.5E-7 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 4.5E-7 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 269 288 4.5E-7 T 19-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 SUPERFAMILY SSF51419 20 280 3.79E-65 T 19-04-2016 IPR029066 PLP-binding barrel AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 PANTHER PTHR11482:SF5 4 424 6.7E-89 T 19-04-2016 AMED_4023 e7b26b4faa4af6c02c630a70b8ff49f6 431 Gene3D G3DSA:2.40.37.10 262 419 5.9E-36 T 19-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 AMED_1519 166446d05e5b3325e90bac080c889bdd 463 SUPERFAMILY SSF51206 86 201 5.11E-20 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_1519 166446d05e5b3325e90bac080c889bdd 463 PANTHER PTHR24567:SF37 280 463 3.1E-134 T 19-04-2016 AMED_1519 166446d05e5b3325e90bac080c889bdd 463 PANTHER PTHR24567:SF37 12 212 3.1E-134 T 19-04-2016 AMED_1519 166446d05e5b3325e90bac080c889bdd 463 PANTHER PTHR24567 280 463 3.1E-134 T 19-04-2016 AMED_1519 166446d05e5b3325e90bac080c889bdd 463 PANTHER PTHR24567 12 212 3.1E-134 T 19-04-2016 AMED_1519 166446d05e5b3325e90bac080c889bdd 463 Gene3D G3DSA:2.60.120.10 87 212 1.2E-18 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1519 166446d05e5b3325e90bac080c889bdd 463 Pfam PF00027 Cyclic nucleotide-binding domain 111 194 1.6E-12 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_1519 166446d05e5b3325e90bac080c889bdd 463 SMART SM00100 91 214 1.7E-5 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_0566 b7ecac7ffdc680b743dc52ae62b5b6a6 339 PANTHER PTHR10366 2 328 2.0E-89 T 19-04-2016 AMED_0566 b7ecac7ffdc680b743dc52ae62b5b6a6 339 Gene3D G3DSA:3.40.50.720 1 200 9.6E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0566 b7ecac7ffdc680b743dc52ae62b5b6a6 339 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 235 3.1E-40 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_0566 b7ecac7ffdc680b743dc52ae62b5b6a6 339 PANTHER PTHR10366:SF12 2 328 2.0E-89 T 19-04-2016 AMED_0566 b7ecac7ffdc680b743dc52ae62b5b6a6 339 SUPERFAMILY SSF51735 1 312 1.33E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0566 b7ecac7ffdc680b743dc52ae62b5b6a6 339 Gene3D G3DSA:3.90.25.10 201 306 3.4E-13 T 19-04-2016 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 PANTHER PTHR10890 1 390 2.5E-208 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 244 265 4.1E-24 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 213 231 4.1E-24 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 76 85 4.1E-24 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 40 51 4.1E-24 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 TIGRFAM TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 2 412 1.6E-210 T 19-04-2016 IPR017812 Mycothiol ligase MshC GO:0010125|GO:0035446 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 Gene3D G3DSA:3.40.50.620 37 329 3.1E-71 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 PANTHER PTHR10890:SF5 1 390 2.5E-208 T 19-04-2016 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 SUPERFAMILY SSF52374 29 336 8.85E-67 T 19-04-2016 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 Hamap MF_01697 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [mshC]. 9 412 52.957 T 19-04-2016 IPR017812 Mycothiol ligase MshC GO:0010125|GO:0035446 AMED_4930 691bc0471577e9a12b20e4b5f0533d9c 412 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 37 336 3.0E-81 T 19-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 SMART SM00267 292 470 1.1E-57 T 19-04-2016 IPR000160 GGDEF domain AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 300 468 1.6E-45 T 19-04-2016 IPR000160 GGDEF domain AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 SUPERFAMILY SSF55073 309 470 1.18E-46 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 Pfam PF00990 Diguanylate cyclase, GGDEF domain 305 466 1.3E-43 T 19-04-2016 IPR000160 GGDEF domain AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 PANTHER PTHR10799:SF750 209 469 1.1E-32 T 19-04-2016 AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 PANTHER PTHR10799 209 469 1.1E-32 T 19-04-2016 AMED_7685 5753af8c72d22db02885ef2ebc5f32d2 480 Gene3D G3DSA:3.30.70.270 304 472 5.5E-54 T 19-04-2016 AMED_4211 55fd6a238d45cec846b01a18d2ff1125 151 Gene3D G3DSA:1.10.490.10 2 125 6.6E-21 T 19-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMED_4211 55fd6a238d45cec846b01a18d2ff1125 151 Pfam PF01152 Bacterial-like globin 4 105 2.0E-10 T 19-04-2016 IPR001486 Truncated hemoglobin GO:0019825 AMED_4211 55fd6a238d45cec846b01a18d2ff1125 151 SUPERFAMILY SSF46458 4 119 6.17E-17 T 19-04-2016 IPR009050 Globin-like AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 237 252 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 35 59 6.6E-42 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 124 141 6.6E-42 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 204 228 6.6E-42 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 158 187 6.6E-42 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 PRINTS PR00069 Aldo-keto reductase signature 91 109 6.6E-42 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 SUPERFAMILY SSF51430 1 273 1.03E-85 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 Gene3D G3DSA:3.20.20.100 3 280 2.3E-96 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 124 141 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 Pfam PF00248 Aldo/keto reductase family 22 268 1.1E-43 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5764 b2d0ef87cfc51e3730305754166f7a4f 293 PANTHER PTHR11732 1 278 2.0E-124 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_4625 133a97aea095241173e2ede202a90d96 203 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 97 198 3.5E-17 T 19-04-2016 IPR005519 Acid phosphatase, class B-like AMED_4625 133a97aea095241173e2ede202a90d96 203 PANTHER PTHR31284 49 197 2.1E-28 T 19-04-2016 AMED_4625 133a97aea095241173e2ede202a90d96 203 SUPERFAMILY SSF56784 72 189 2.61E-7 T 19-04-2016 IPR023214 HAD-like domain AMED_4625 133a97aea095241173e2ede202a90d96 203 Gene3D G3DSA:3.40.50.1000 76 185 3.0E-4 T 19-04-2016 IPR023214 HAD-like domain AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:2.160.10.10 997 1100 5.7E-7 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF51161 987 1099 3.88E-10 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:3.40.50.980 16 133 7.1E-35 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:3.40.50.980 172 208 7.1E-35 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Pfam PF13193 AMP-binding enzyme C-terminal domain 444 516 6.9E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 47 458 6.7E-115 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF51161 713 853 7.21E-13 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF47336 542 624 1.96E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:3.40.50.980 209 350 1.5E-36 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:3.30.300.30 431 551 4.9E-23 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:1.10.1200.10 552 617 1.3E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Pfam PF00550 Phosphopantetheine attachment site 548 610 1.6E-6 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF56801 15 554 8.5E-132 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 SUPERFAMILY SSF51161 1218 1339 7.21E-11 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:2.160.10.10 1185 1338 1.2E-10 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:2.160.10.10 701 852 8.5E-14 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 PANTHER PTHR24095 15 163 3.1E-147 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 PANTHER PTHR24095 180 516 3.1E-147 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Gene3D G3DSA:2.30.38.10 351 424 4.0E-24 T 19-04-2016 AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3284 5aed5b3ba460602ccc97eabb00787e3e 1400 Pfam PF00501 AMP-binding enzyme 20 435 5.1E-85 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 PANTHER PTHR24220 10 228 3.1E-98 T 19-04-2016 AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 SUPERFAMILY SSF52540 11 224 3.25E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 PANTHER PTHR24220:SF559 10 228 3.1E-98 T 19-04-2016 AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 Gene3D G3DSA:3.40.50.300 7 224 5.3E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 Pfam PF00005 ABC transporter 24 172 4.2E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3168 28b97b943a53d258bf79644c20dbe9bb 229 SMART SM00382 33 221 4.0E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9141 792b38c3fde8567a3987444ac49ae6a2 334 Pfam PF03663 Glycosyl hydrolase family 76 22 299 3.5E-22 T 19-04-2016 IPR005198 Glycoside hydrolase, family 76 KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10 AMED_9141 792b38c3fde8567a3987444ac49ae6a2 334 Gene3D G3DSA:1.50.10.10 35 228 1.9E-17 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_9141 792b38c3fde8567a3987444ac49ae6a2 334 PANTHER PTHR12145:SF14 44 256 2.6E-17 T 19-04-2016 AMED_9141 792b38c3fde8567a3987444ac49ae6a2 334 SUPERFAMILY SSF48208 19 303 8.08E-21 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_9141 792b38c3fde8567a3987444ac49ae6a2 334 PANTHER PTHR12145 44 256 2.6E-17 T 19-04-2016 AMED_7590 7844ec0101e3d50524f38c20c20fb6c3 540 Pfam PF04185 Phosphoesterase family 54 497 4.4E-84 T 19-04-2016 IPR007312 Phosphoesterase GO:0016788 AMED_7590 7844ec0101e3d50524f38c20c20fb6c3 540 PANTHER PTHR31956:SF12 13 225 1.3E-100 T 19-04-2016 AMED_7590 7844ec0101e3d50524f38c20c20fb6c3 540 PANTHER PTHR31956:SF12 268 520 1.3E-100 T 19-04-2016 AMED_7590 7844ec0101e3d50524f38c20c20fb6c3 540 PANTHER PTHR31956 268 520 1.3E-100 T 19-04-2016 AMED_7590 7844ec0101e3d50524f38c20c20fb6c3 540 PANTHER PTHR31956 13 225 1.3E-100 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Gene3D G3DSA:3.40.50.80 408 572 1.7E-28 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 598 671 3.9E-14 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Gene3D G3DSA:2.40.30.10 312 407 1.1E-22 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 PANTHER PTHR19370:SF106 314 498 7.6E-46 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 PANTHER PTHR19370:SF106 523 598 7.6E-46 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 PANTHER PTHR19370 523 598 7.6E-46 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 SUPERFAMILY SSF52343 405 576 3.8E-25 T 19-04-2016 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 SUPERFAMILY SSF54292 568 678 3.15E-27 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 SUPERFAMILY SSF63380 310 420 1.47E-24 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Pfam PF00175 Oxidoreductase NAD-binding domain 431 496 5.9E-7 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Gene3D G3DSA:3.10.20.30 573 680 1.2E-28 T 19-04-2016 IPR012675 Beta-grasp domain AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 628 636 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Pfam PF00970 Oxidoreductase FAD-binding domain 321 416 2.3E-11 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 Pfam PF00487 Fatty acid desaturase 54 280 5.5E-26 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_6744 c7d86bb5739577f2eddc31f4c936fcd2 682 PANTHER PTHR19370 314 498 7.6E-46 T 19-04-2016 AMED_5356 dc990d1e51dede5b0de4cc8c0dcbab97 218 Gene3D G3DSA:1.10.357.10 6 201 1.3E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5356 dc990d1e51dede5b0de4cc8c0dcbab97 218 PANTHER PTHR30055 3 190 2.4E-16 T 19-04-2016 AMED_5356 dc990d1e51dede5b0de4cc8c0dcbab97 218 SUPERFAMILY SSF46689 7 90 1.25E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5356 dc990d1e51dede5b0de4cc8c0dcbab97 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 65 1.5E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6098 9d3002f3dc210e1938383a0fef0846eb 228 PANTHER PTHR23029 23 228 1.9E-42 T 19-04-2016 AMED_6098 9d3002f3dc210e1938383a0fef0846eb 228 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 24 220 6.3E-46 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6098 9d3002f3dc210e1938383a0fef0846eb 228 SMART SM00855 23 181 8.1E-11 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6098 9d3002f3dc210e1938383a0fef0846eb 228 SUPERFAMILY SSF53254 22 224 2.23E-47 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6098 9d3002f3dc210e1938383a0fef0846eb 228 Gene3D G3DSA:3.40.50.1240 22 224 2.9E-47 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6098 9d3002f3dc210e1938383a0fef0846eb 228 PANTHER PTHR23029:SF1 23 228 1.9E-42 T 19-04-2016 AMED_8926 7e985e92f491f2e49f6af5090e668e72 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 143 312 7.5E-26 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8926 7e985e92f491f2e49f6af5090e668e72 316 SUPERFAMILY SSF161098 118 305 9.94E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8926 7e985e92f491f2e49f6af5090e668e72 316 PANTHER PTHR30151:SF0 70 314 2.1E-86 T 19-04-2016 AMED_8926 7e985e92f491f2e49f6af5090e668e72 316 Gene3D G3DSA:1.10.3720.10 115 311 1.0E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8926 7e985e92f491f2e49f6af5090e668e72 316 PANTHER PTHR30151 70 314 2.1E-86 T 19-04-2016 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 SUPERFAMILY SSF51306 121 239 6.1E-35 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 Hamap MF_00015 LexA repressor [lexA]. 32 241 33.653 T 19-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 SUPERFAMILY SSF46785 32 98 3.41E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 Gene3D G3DSA:1.10.10.10 31 98 4.1E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 Gene3D G3DSA:2.10.109.10 122 241 2.7E-44 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 Pfam PF01726 LexA DNA binding domain 31 94 2.5E-26 T 19-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 Pfam PF00717 Peptidase S24-like 160 225 2.6E-15 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 TIGRFAM TIGR00498 lexA: repressor LexA 31 240 3.6E-78 T 19-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 196 208 6.2E-12 T 19-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 168 179 6.2E-12 T 19-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 157 167 6.2E-12 T 19-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 PANTHER PTHR33516:SF2 30 241 5.3E-89 T 19-04-2016 AMED_2391 dd721339a05d4cde53f39b7d12de0b80 241 PANTHER PTHR33516 30 241 5.3E-89 T 19-04-2016 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 PANTHER PTHR30173:SF22 6 314 4.6E-81 T 19-04-2016 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 Gene3D G3DSA:3.10.450.50 202 314 1.9E-13 T 19-04-2016 IPR032710 NTF2-like domain AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 189 3.0E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 Gene3D G3DSA:1.10.1740.10 2 86 4.7E-30 T 19-04-2016 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 32 63 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 Pfam PF08281 Sigma-70, region 4 134 185 1.2E-13 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 Pfam PF04542 Sigma-70 region 2 10 76 1.4E-20 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 SUPERFAMILY SSF88946 3 81 9.42E-26 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 SUPERFAMILY SSF54427 204 321 1.23E-11 T 19-04-2016 IPR032710 NTF2-like domain AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 Gene3D G3DSA:1.10.10.10 127 189 3.7E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 SUPERFAMILY SSF88659 128 189 5.79E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 4 315 2.4E-116 T 19-04-2016 IPR014305 RNA polymerase sigma-G type, actinobacteria AMED_6373 63394eb24ee70580eddcbb7e6a96da36 345 PANTHER PTHR30173 6 314 4.6E-81 T 19-04-2016 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 PANTHER PTHR22773:SF41 140 515 9.8E-156 T 19-04-2016 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 Pfam PF00361 Proton-conducting membrane transporter 164 457 3.1E-73 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 134 511 1.7E-110 T 19-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 18 512 17.427 T 19-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 PANTHER PTHR22773:SF41 13 118 9.8E-156 T 19-04-2016 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 PANTHER PTHR22773 13 118 9.8E-156 T 19-04-2016 AMED_0533 8ab522ad4a9060fde27d17615b9881b1 522 PANTHER PTHR22773 140 515 9.8E-156 T 19-04-2016 AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 Gene3D G3DSA:3.30.420.40 219 364 1.5E-31 T 19-04-2016 AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 Gene3D G3DSA:1.10.10.10 10 66 1.4E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 Pfam PF00480 ROK family 85 366 3.0E-31 T 19-04-2016 IPR000600 ROK family AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 PANTHER PTHR18964:SF108 79 386 7.1E-42 T 19-04-2016 AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 SUPERFAMILY SSF46785 11 67 4.32E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 PANTHER PTHR18964 79 386 7.1E-42 T 19-04-2016 AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 SUPERFAMILY SSF53067 84 383 1.95E-41 T 19-04-2016 AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 Pfam PF12802 MarR family 24 66 1.2E-6 T 19-04-2016 AMED_5065 46519ac29b6a694ec7a8d5133141e391 396 Gene3D G3DSA:3.30.420.40 79 218 1.0E-33 T 19-04-2016 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 137 156 2.0E-57 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 281 300 2.0E-57 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 106 120 2.0E-57 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 251 266 2.0E-57 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 226 242 2.0E-57 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 175 194 2.0E-57 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 Pfam PF00490 Delta-aminolevulinic acid dehydratase 1 306 3.2E-130 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 Gene3D G3DSA:3.20.20.70 1 308 4.3E-132 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 SMART SM01004 1 307 4.7E-193 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PIRSF PIRSF001415 1 308 8.1E-135 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 PANTHER PTHR11458 1 308 3.3E-156 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 226 238 - T 19-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0485 9f18a2c09c88ef1c308bdd3060a52374 308 SUPERFAMILY SSF51569 1 308 2.44E-123 T 19-04-2016 AMED_0197 ac381a84d4d676792ef9cfd0f8752035 161 Pfam PF12680 SnoaL-like domain 4 98 2.4E-6 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_0197 ac381a84d4d676792ef9cfd0f8752035 161 SUPERFAMILY SSF54427 4 109 2.43E-12 T 19-04-2016 IPR032710 NTF2-like domain AMED_0197 ac381a84d4d676792ef9cfd0f8752035 161 Gene3D G3DSA:3.10.450.50 4 106 2.7E-12 T 19-04-2016 IPR032710 NTF2-like domain AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 210 343 2.3E-25 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 Gene3D G3DSA:1.20.140.10 208 344 2.0E-35 T 19-04-2016 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 PANTHER PTHR10909:SF302 2 346 1.1E-84 T 19-04-2016 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 Gene3D G3DSA:1.10.540.10 4 115 6.4E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 SUPERFAMILY SSF56645 3 197 2.36E-38 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 114 1.3E-23 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 Gene3D G3DSA:2.40.110.10 132 187 7.9E-6 T 19-04-2016 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 SUPERFAMILY SSF47203 209 345 2.09E-35 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7166 e4bfa56eb16740b5d5b92cbf506adc59 348 PANTHER PTHR10909 2 346 1.1E-84 T 19-04-2016 AMED_2156 a5fdc54c192e89e3a4d3e61b888cac31 394 PANTHER PTHR30582 48 392 1.8E-62 T 19-04-2016 AMED_2156 a5fdc54c192e89e3a4d3e61b888cac31 394 Gene3D G3DSA:2.40.440.10 246 364 1.6E-17 T 19-04-2016 AMED_2156 a5fdc54c192e89e3a4d3e61b888cac31 394 PANTHER PTHR30582:SF2 48 392 1.8E-62 T 19-04-2016 AMED_2156 a5fdc54c192e89e3a4d3e61b888cac31 394 Pfam PF03734 L,D-transpeptidase catalytic domain 248 363 1.5E-16 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_2156 a5fdc54c192e89e3a4d3e61b888cac31 394 SUPERFAMILY SSF141523 237 363 8.11E-25 T 19-04-2016 AMED_3114 cc563d2da60a1ea544d497300374fb6c 219 Gene3D G3DSA:2.70.50.50 32 217 3.8E-40 T 19-04-2016 AMED_3114 cc563d2da60a1ea544d497300374fb6c 219 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 32 214 5.7E-33 T 19-04-2016 IPR004302 Chitin-binding protein, N-terminal AMED_3114 cc563d2da60a1ea544d497300374fb6c 219 SUPERFAMILY SSF81296 32 217 9.38E-31 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_3114 cc563d2da60a1ea544d497300374fb6c 219 PANTHER PTHR34823 1 218 2.4E-53 T 19-04-2016 AMED_3581 187e8383410625d71ba906050e03fb9f 226 Gene3D G3DSA:1.10.10.10 129 224 2.6E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3581 187e8383410625d71ba906050e03fb9f 226 SMART SM00448 7 117 4.4E-32 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3581 187e8383410625d71ba906050e03fb9f 226 SUPERFAMILY SSF46894 123 223 2.66E-23 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3581 187e8383410625d71ba906050e03fb9f 226 Gene3D G3DSA:3.40.50.2300 6 128 2.6E-32 T 19-04-2016 AMED_3581 187e8383410625d71ba906050e03fb9f 226 PANTHER PTHR26402 7 223 4.3E-71 T 19-04-2016 AMED_3581 187e8383410625d71ba906050e03fb9f 226 PANTHER PTHR26402:SF578 7 223 4.3E-71 T 19-04-2016 AMED_3581 187e8383410625d71ba906050e03fb9f 226 Pfam PF00072 Response regulator receiver domain 9 117 1.8E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3581 187e8383410625d71ba906050e03fb9f 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 222 1.3E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3581 187e8383410625d71ba906050e03fb9f 226 SMART SM00862 149 222 2.7E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3581 187e8383410625d71ba906050e03fb9f 226 SUPERFAMILY SSF52172 5 131 6.83E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7647 c5bf4262c2217c12422e8b652fd4b030 163 SUPERFAMILY SSF55961 12 162 3.73E-20 T 19-04-2016 AMED_7647 c5bf4262c2217c12422e8b652fd4b030 163 Gene3D G3DSA:3.30.530.20 12 118 3.5E-13 T 19-04-2016 IPR023393 START-like domain AMED_7647 c5bf4262c2217c12422e8b652fd4b030 163 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 14 160 9.7E-14 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_0287 386c4d7f069c8a7db454b16e0b16c453 166 Gene3D G3DSA:1.10.10.10 13 149 4.0E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0287 386c4d7f069c8a7db454b16e0b16c453 166 Pfam PF12802 MarR family 47 97 6.2E-9 T 19-04-2016 AMED_0287 386c4d7f069c8a7db454b16e0b16c453 166 SUPERFAMILY SSF46785 14 148 2.12E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4922 98395afc6168970489df9e58a6434842 181 Gene3D G3DSA:1.10.3300.10 4 179 2.5E-31 T 19-04-2016 IPR023286 ABATE domain AMED_4922 98395afc6168970489df9e58a6434842 181 PANTHER PTHR35525 3 181 9.6E-20 T 19-04-2016 AMED_4922 98395afc6168970489df9e58a6434842 181 Pfam PF07336 Putative stress-induced transcription regulator 10 132 1.5E-14 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_4922 98395afc6168970489df9e58a6434842 181 SUPERFAMILY SSF160904 4 176 2.62E-30 T 19-04-2016 AMED_4922 98395afc6168970489df9e58a6434842 181 Pfam PF11706 CGNR zinc finger 137 177 3.8E-10 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 Gene3D G3DSA:1.10.10.10 7 136 2.3E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 SMART SM00347 27 124 3.2E-18 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 Pfam PF12802 MarR family 33 88 1.0E-12 T 19-04-2016 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 8.0E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 8.0E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 8.0E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 8.0E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 PANTHER PTHR33164:SF16 1 137 6.1E-23 T 19-04-2016 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 PANTHER PTHR33164 1 137 6.1E-23 T 19-04-2016 AMED_7802 1ddcbe94a5baaa75943e90567f123743 139 SUPERFAMILY SSF46785 5 137 2.33E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1710 776e096e296eb4763858d014b1d84577 137 Pfam PF11774 Lsr2 2 111 1.8E-40 T 19-04-2016 IPR024412 Lsr2 AMED_1710 776e096e296eb4763858d014b1d84577 137 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 105 2.0E-16 T 19-04-2016 IPR024412 Lsr2 AMED_7379 749139fa7171250502157ef6265d494e 739 SUPERFAMILY SSF52279 387 624 3.79E-57 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 99 115 2.0E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 164 180 2.0E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 118 137 2.0E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 271 289 2.0E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 PRINTS PR00133 Glycosyl hydrolase family 3 signature 201 217 2.0E-20 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 Gene3D G3DSA:3.40.50.1700 375 624 2.4E-74 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 SUPERFAMILY SSF51445 32 385 1.16E-104 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7379 749139fa7171250502157ef6265d494e 739 PANTHER PTHR30620 2 739 5.4E-295 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_7379 749139fa7171250502157ef6265d494e 739 Pfam PF14310 Fibronectin type III-like domain 659 728 2.3E-25 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_7379 749139fa7171250502157ef6265d494e 739 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 49 348 1.6E-74 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 PANTHER PTHR30620:SF5 2 739 5.4E-295 T 19-04-2016 AMED_7379 749139fa7171250502157ef6265d494e 739 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 387 621 5.1E-56 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 Gene3D G3DSA:3.20.20.300 31 366 2.3E-108 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7379 749139fa7171250502157ef6265d494e 739 SMART SM01217 659 728 3.7E-34 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_2457 5cc1743f1aa8c93081a301fd4a60ecfa 253 PANTHER PTHR10434:SF21 2 228 3.0E-77 T 19-04-2016 AMED_2457 5cc1743f1aa8c93081a301fd4a60ecfa 253 Gene3D G3DSA:3.40.1130.10 2 206 1.3E-31 T 19-04-2016 AMED_2457 5cc1743f1aa8c93081a301fd4a60ecfa 253 SMART SM00563 35 154 2.1E-34 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_2457 5cc1743f1aa8c93081a301fd4a60ecfa 253 PANTHER PTHR10434 2 228 3.0E-77 T 19-04-2016 AMED_2457 5cc1743f1aa8c93081a301fd4a60ecfa 253 SUPERFAMILY SSF69593 2 226 2.22E-53 T 19-04-2016 AMED_2457 5cc1743f1aa8c93081a301fd4a60ecfa 253 Pfam PF01553 Acyltransferase 22 151 9.4E-23 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_3269 2fe00893ed29078b2bc25ba8fb104796 258 Gene3D G3DSA:3.90.226.10 9 253 2.5E-58 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3269 2fe00893ed29078b2bc25ba8fb104796 258 SUPERFAMILY SSF52096 10 255 4.23E-63 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3269 2fe00893ed29078b2bc25ba8fb104796 258 PANTHER PTHR11941 10 256 4.8E-56 T 19-04-2016 AMED_3269 2fe00893ed29078b2bc25ba8fb104796 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 253 3.3E-33 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3269 2fe00893ed29078b2bc25ba8fb104796 258 PANTHER PTHR11941:SF21 10 256 4.8E-56 T 19-04-2016 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 PANTHER PTHR13710 9 365 2.7E-113 T 19-04-2016 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 PANTHER PTHR13710 443 487 2.7E-113 T 19-04-2016 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Pfam PF16124 RecQ zinc-binding 444 487 5.4E-6 T 19-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 SUPERFAMILY SSF53271 577 700 2.1E-13 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:3.40.50.300 221 363 1.1E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Pfam PF00271 Helicase conserved C-terminal domain 248 345 4.8E-12 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 150 159 - T 19-04-2016 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 PANTHER PTHR13710:SF81 9 365 2.7E-113 T 19-04-2016 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 PANTHER PTHR13710:SF81 443 487 2.7E-113 T 19-04-2016 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:3.40.50.300 25 208 1.2E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Pfam PF00270 DEAD/DEAH box helicase 31 200 1.2E-15 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:1.10.10.10 440 504 1.4E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 Gene3D G3DSA:3.40.50.2020 578 694 1.3E-14 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 SMART SM00490 265 346 4.4E-21 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 SMART SM00487 24 229 6.1E-23 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 SUPERFAMILY SSF52540 36 357 7.51E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6696 cee07bbe212d066a5c279aa5384a4e60 703 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 27 359 1.4E-68 T 19-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AMED_6149 97a7ea562fc143d5b2b3ed896dd7072c 466 SUPERFAMILY SSF56349 187 304 2.94E-25 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6149 97a7ea562fc143d5b2b3ed896dd7072c 466 SUPERFAMILY SSF56349 141 158 2.94E-25 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6149 97a7ea562fc143d5b2b3ed896dd7072c 466 SUPERFAMILY SSF56349 329 444 2.94E-25 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6149 97a7ea562fc143d5b2b3ed896dd7072c 466 Gene3D G3DSA:1.10.443.10 240 444 1.1E-21 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_6149 97a7ea562fc143d5b2b3ed896dd7072c 466 Pfam PF00589 Phage integrase family 263 442 1.9E-5 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_4544 e09de535f939d8e9df93a773b342e2f3 391 Gene3D G3DSA:3.20.20.150 16 378 3.1E-90 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4544 e09de535f939d8e9df93a773b342e2f3 391 Pfam PF06134 L-rhamnose isomerase (RhaA) 97 340 1.3E-7 T 19-04-2016 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14|UniPathway: UPA00541 AMED_4544 e09de535f939d8e9df93a773b342e2f3 391 PANTHER PTHR30268 6 383 2.8E-176 T 19-04-2016 AMED_4544 e09de535f939d8e9df93a773b342e2f3 391 TIGRFAM TIGR02635 RhaI_grampos: L-rhamnose isomerase 8 381 2.3E-192 T 19-04-2016 IPR013457 Rhamnose isomerase-related AMED_4544 e09de535f939d8e9df93a773b342e2f3 391 SUPERFAMILY SSF51658 28 363 1.33E-94 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 PANTHER PTHR26402:SF603 6 231 1.3E-86 T 19-04-2016 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 Gene3D G3DSA:1.10.10.10 131 231 5.0E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 Pfam PF00072 Response regulator receiver domain 8 116 4.0E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 SMART SM00862 154 230 4.5E-20 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 SUPERFAMILY SSF52172 5 126 2.28E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 Gene3D G3DSA:3.40.50.2300 4 124 6.6E-39 T 19-04-2016 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 PANTHER PTHR26402 6 231 1.3E-86 T 19-04-2016 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 SUPERFAMILY SSF46894 132 231 8.79E-23 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 SMART SM00448 6 116 5.4E-43 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1897 41dbf2869dd32ae9428bea20b45081a2 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 230 4.0E-21 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 PANTHER PTHR13078:SF52 22 80 1.5E-73 T 19-04-2016 AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 PANTHER PTHR13078:SF52 97 298 1.5E-73 T 19-04-2016 AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 Gene3D G3DSA:3.10.129.10 13 162 9.9E-16 T 19-04-2016 IPR029069 HotDog domain AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 PANTHER PTHR13078 22 80 1.5E-73 T 19-04-2016 AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 PANTHER PTHR13078 97 298 1.5E-73 T 19-04-2016 AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 Pfam PF13452 N-terminal half of MaoC dehydratase 21 154 3.2E-19 T 19-04-2016 AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 SUPERFAMILY SSF50249 174 295 2.74E-24 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 224 287 9.6E-22 T 19-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMED_2511 4cbd98694a71608d6ff64616871c67a9 302 SUPERFAMILY SSF54637 13 169 2.82E-18 T 19-04-2016 IPR029069 HotDog domain AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PANTHER PTHR30346 4 277 3.2E-63 T 19-04-2016 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Gene3D G3DSA:1.10.10.10 4 88 5.6E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Pfam PF03466 LysR substrate binding domain 101 280 4.9E-22 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Gene3D G3DSA:3.40.190.10 175 257 2.6E-11 T 19-04-2016 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 SUPERFAMILY SSF46785 4 86 1.16E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.8E-22 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 Gene3D G3DSA:3.40.190.10 102 174 2.4E-16 T 19-04-2016 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 SUPERFAMILY SSF53850 100 281 1.17E-21 T 19-04-2016 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.5E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.5E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_4160 df7de99f2edfc6ce4b1c6cc715ef03b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.5E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 Pfam PF01547 Bacterial extracellular solute-binding protein 44 326 6.3E-34 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 Gene3D G3DSA:3.40.190.10 149 315 8.1E-33 T 19-04-2016 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 Gene3D G3DSA:3.40.190.10 316 356 5.7E-28 T 19-04-2016 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 Gene3D G3DSA:3.40.190.10 39 148 5.7E-28 T 19-04-2016 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 SUPERFAMILY SSF53850 39 419 1.4E-65 T 19-04-2016 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 PANTHER PTHR30061:SF25 21 430 9.9E-101 T 19-04-2016 AMED_7485 aa16735bf71295cdc4c74991441aff09 433 PANTHER PTHR30061 21 430 9.9E-101 T 19-04-2016 AMED_6981 d33ee8b36d0c129ee273dd3fec68462d 98 Pfam PF14534 Domain of unknown function (DUF4440) 6 71 3.1E-6 T 19-04-2016 IPR027843 Domain of unknown function DUF4440 AMED_6981 d33ee8b36d0c129ee273dd3fec68462d 98 SUPERFAMILY SSF54427 2 95 4.73E-10 T 19-04-2016 IPR032710 NTF2-like domain AMED_6981 d33ee8b36d0c129ee273dd3fec68462d 98 Gene3D G3DSA:3.10.450.50 5 69 2.0E-6 T 19-04-2016 IPR032710 NTF2-like domain AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 PANTHER PTHR21198:SF7 1 227 1.4E-75 T 19-04-2016 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 SUPERFAMILY SSF53681 118 228 2.94E-32 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 2.5E-55 T 19-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 230 2.8E-67 T 19-04-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 Gene3D G3DSA:3.40.50.1860 114 213 8.9E-33 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 Gene3D G3DSA:3.40.50.1860 1 113 2.0E-39 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 PANTHER PTHR21198 1 227 1.4E-75 T 19-04-2016 AMED_7709 2e28dccf80edb7996e41a32e2d239afe 240 SUPERFAMILY SSF53681 1 116 7.19E-34 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 PANTHER PTHR30204 1 135 9.0E-20 T 19-04-2016 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 Gene3D G3DSA:1.10.1660.10 7 118 1.6E-24 T 19-04-2016 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 19 32 1.9E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 1.9E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 19 1.9E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 Pfam PF13411 MerR HTH family regulatory protein 8 74 4.2E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 SMART SM00422 7 76 3.8E-19 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4257 8f059ed88d05585ab440b1498b4d01ca 326 SUPERFAMILY SSF46955 7 114 2.42E-22 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_8372 b8779f2565a894c724928856e761c33c 326 PANTHER PTHR30465:SF55 2 324 4.7E-113 T 19-04-2016 AMED_8372 b8779f2565a894c724928856e761c33c 326 PANTHER PTHR30465 2 324 4.7E-113 T 19-04-2016 AMED_8372 b8779f2565a894c724928856e761c33c 326 SUPERFAMILY SSF161098 94 323 1.96E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8372 b8779f2565a894c724928856e761c33c 326 Gene3D G3DSA:1.10.3720.10 95 316 2.9E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8372 b8779f2565a894c724928856e761c33c 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 324 2.6E-41 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3614 28151007d631f2a010e8334351055c6e 253 Gene3D G3DSA:1.10.1660.10 4 57 3.6E-24 T 19-04-2016 AMED_3614 28151007d631f2a010e8334351055c6e 253 PANTHER PTHR30204:SF18 1 105 4.4E-24 T 19-04-2016 AMED_3614 28151007d631f2a010e8334351055c6e 253 Pfam PF13411 MerR HTH family regulatory protein 5 69 1.6E-17 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3614 28151007d631f2a010e8334351055c6e 253 PANTHER PTHR30204 1 105 4.4E-24 T 19-04-2016 AMED_3614 28151007d631f2a010e8334351055c6e 253 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 2.8E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3614 28151007d631f2a010e8334351055c6e 253 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 2.8E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3614 28151007d631f2a010e8334351055c6e 253 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 2.8E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3614 28151007d631f2a010e8334351055c6e 253 SMART SM00422 4 72 6.0E-29 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3614 28151007d631f2a010e8334351055c6e 253 SUPERFAMILY SSF46955 4 104 3.15E-24 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_3614 28151007d631f2a010e8334351055c6e 253 Gene3D G3DSA:1.10.1660.10 58 129 1.5E-11 T 19-04-2016 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 PANTHER PTHR11993:SF28 53 355 3.0E-213 T 19-04-2016 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 PANTHER PTHR11993:SF28 372 455 3.0E-213 T 19-04-2016 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 SUPERFAMILY SSF56762 70 460 2.35E-122 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMED_0523 900d3bc19348aef9dd40d48a96319299 460 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 59 460 1.1E-169 T 19-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 PANTHER PTHR11993 53 355 3.0E-213 T 19-04-2016 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 PANTHER PTHR11993 372 455 3.0E-213 T 19-04-2016 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 53 460 47.198 T 19-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 Gene3D G3DSA:1.10.645.10 388 453 5.7E-67 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMED_0523 900d3bc19348aef9dd40d48a96319299 460 Gene3D G3DSA:1.10.645.10 56 344 5.7E-67 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMED_0523 900d3bc19348aef9dd40d48a96319299 460 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 97 108 - T 19-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 AMED_0523 900d3bc19348aef9dd40d48a96319299 460 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 175 460 3.6E-111 T 19-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 AMED_2855 938653f69cb4130a1301428fdd2545b3 115 SUPERFAMILY SSF46785 3 101 2.35E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2855 938653f69cb4130a1301428fdd2545b3 115 SMART SM00418 2 84 6.0E-19 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2855 938653f69cb4130a1301428fdd2545b3 115 Gene3D G3DSA:1.10.10.10 3 105 8.3E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2855 938653f69cb4130a1301428fdd2545b3 115 PANTHER PTHR33154 4 96 1.3E-17 T 19-04-2016 AMED_2855 938653f69cb4130a1301428fdd2545b3 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 4.1E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2855 938653f69cb4130a1301428fdd2545b3 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 4.1E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2855 938653f69cb4130a1301428fdd2545b3 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 4 19 4.1E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2855 938653f69cb4130a1301428fdd2545b3 115 Pfam PF12840 Helix-turn-helix domain 4 61 3.3E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0417 28670c654372aa34f50b81b9ebf29130 467 Gene3D G3DSA:3.90.1150.10 343 451 1.3E-7 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 SUPERFAMILY SSF46785 18 83 1.66E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0417 28670c654372aa34f50b81b9ebf29130 467 Gene3D G3DSA:1.10.10.10 19 82 6.2E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0417 28670c654372aa34f50b81b9ebf29130 467 PANTHER PTHR11751:SF294 133 448 8.2E-72 T 19-04-2016 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 2.4E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 2.4E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 SMART SM00345 20 79 1.2E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 PANTHER PTHR11751 133 448 8.2E-72 T 19-04-2016 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 Gene3D G3DSA:3.40.640.10 132 342 4.4E-54 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 2.9E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 Pfam PF00155 Aminotransferase class I and II 124 448 2.1E-27 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_0417 28670c654372aa34f50b81b9ebf29130 467 SUPERFAMILY SSF53383 91 451 1.25E-76 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7451 4121033fae476fe9b3f66bcc15961e37 458 PANTHER PTHR35369 6 362 2.6E-46 T 19-04-2016 AMED_7451 4121033fae476fe9b3f66bcc15961e37 458 PANTHER PTHR35369:SF2 6 362 2.6E-46 T 19-04-2016 AMED_7451 4121033fae476fe9b3f66bcc15961e37 458 SUPERFAMILY SSF56672 2 162 1.78E-16 T 19-04-2016 AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 PANTHER PTHR13812:SF19 1 343 4.3E-36 T 19-04-2016 AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 SUPERFAMILY SSF51735 17 337 1.13E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 Gene3D G3DSA:3.40.50.720 159 300 1.3E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 PANTHER PTHR13812 1 343 4.3E-36 T 19-04-2016 AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 PIRSF PIRSF001439 10 338 4.5E-75 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 35 331 2.9E-37 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 TIGRFAM TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB 18 334 1.1E-122 T 19-04-2016 IPR023866 2,3-diaminopropionate biosynthesis protein SbnB AMED_4796 b354723ab8f9d2f1fa26bf14ba143163 348 Gene3D G3DSA:3.30.1780.10 18 158 1.9E-41 T 19-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal AMED_3540 9360e827789459f0031859851d801599 229 PANTHER PTHR26402 3 225 3.0E-83 T 19-04-2016 AMED_3540 9360e827789459f0031859851d801599 229 Gene3D G3DSA:3.40.50.2300 5 121 3.2E-39 T 19-04-2016 AMED_3540 9360e827789459f0031859851d801599 229 Pfam PF00072 Response regulator receiver domain 5 114 7.4E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3540 9360e827789459f0031859851d801599 229 PANTHER PTHR26402:SF50 3 225 3.0E-83 T 19-04-2016 AMED_3540 9360e827789459f0031859851d801599 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 1.1E-23 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3540 9360e827789459f0031859851d801599 229 SUPERFAMILY SSF46894 131 226 5.95E-27 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3540 9360e827789459f0031859851d801599 229 SUPERFAMILY SSF52172 4 123 1.57E-39 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3540 9360e827789459f0031859851d801599 229 Gene3D G3DSA:1.10.10.10 131 226 1.9E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3540 9360e827789459f0031859851d801599 229 SMART SM00862 149 225 1.7E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3540 9360e827789459f0031859851d801599 229 SMART SM00448 3 113 1.3E-38 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 PANTHER PTHR11814 1 584 3.1E-189 T 19-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 599 619 - T 19-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 PANTHER PTHR11814:SF123 1 584 3.1E-189 T 19-04-2016 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 Pfam PF00916 Sulfate permease family 10 356 1.1E-66 T 19-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 SUPERFAMILY SSF53056 521 717 3.79E-55 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 Pfam PF00484 Carbonic anhydrase 552 705 2.0E-43 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 Gene3D G3DSA:3.40.1050.10 518 716 1.4E-69 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_2216 4bc9070c0ec5bc67f9e0c6060239863b 727 SMART SM00947 545 709 1.2E-59 T 19-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 PRINTS PR00162 Rieske 2Fe-2S subunit signature 79 90 9.6E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 PRINTS PR00162 Rieske 2Fe-2S subunit signature 112 124 9.6E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 PRINTS PR00162 Rieske 2Fe-2S subunit signature 99 111 9.6E-8 T 19-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 Gene3D G3DSA:2.102.10.10 10 138 4.4E-29 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 PANTHER PTHR10134 67 136 6.3E-15 T 19-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 SUPERFAMILY SSF50022 45 138 2.88E-27 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4207 4fc848e2ce23ceea6d897f91b28218bf 141 Pfam PF00355 Rieske [2Fe-2S] domain 49 126 2.3E-16 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 15 426 4.9E-174 T 19-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 Pfam PF00266 Aminotransferase class-V 34 414 8.1E-138 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 PANTHER PTHR11601:SF17 16 425 3.8E-180 T 19-04-2016 AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 PANTHER PTHR11601 16 425 3.8E-180 T 19-04-2016 AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 SUPERFAMILY SSF53383 12 421 2.39E-118 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 235 254 - T 19-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 Gene3D G3DSA:3.40.640.10 45 301 2.7E-83 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2833 157ed7013687eb1d3f0e78f1471d23a9 429 Gene3D G3DSA:3.90.1150.10 302 420 1.7E-25 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 SUPERFAMILY SSF52540 16 166 1.03E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 PANTHER PTHR30448:SF0 3 296 1.0E-144 T 19-04-2016 AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 Gene3D G3DSA:3.40.50.300 9 167 4.3E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 PIRSF PIRSF005052 12 296 1.4E-111 T 19-04-2016 IPR005337 RapZ-like family GO:0005524 AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 PANTHER PTHR30448 3 296 1.0E-144 T 19-04-2016 AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 12 295 40.993 T 19-04-2016 IPR005337 RapZ-like family GO:0005524 AMED_2779 5ace3487a62e6709024b580bc3b0aec5 296 Pfam PF03668 P-loop ATPase protein family 12 296 2.9E-110 T 19-04-2016 IPR005337 RapZ-like family GO:0005524 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 SUPERFAMILY SSF51905 456 495 1.01E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 SUPERFAMILY SSF51905 10 291 1.01E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 PANTHER PTHR10668:SF5 3 511 3.0E-79 T 19-04-2016 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 Pfam PF01593 Flavin containing amine oxidoreductase 20 281 2.3E-14 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 Gene3D G3DSA:3.50.50.60 9 77 3.8E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 Gene3D G3DSA:3.50.50.60 202 309 3.8E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4029 208835fbc70f8a4cb54fd3f31f19e3c5 560 PANTHER PTHR10668 3 511 3.0E-79 T 19-04-2016 AMED_8224 1ae4fcaedc5bb5cced87de106e88ac40 368 Gene3D G3DSA:3.30.565.10 261 365 2.3E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8224 1ae4fcaedc5bb5cced87de106e88ac40 368 SMART SM00387 273 368 2.9E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8224 1ae4fcaedc5bb5cced87de106e88ac40 368 SUPERFAMILY SSF55874 244 364 1.74E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8224 1ae4fcaedc5bb5cced87de106e88ac40 368 PANTHER PTHR24421 36 364 1.9E-77 T 19-04-2016 AMED_8224 1ae4fcaedc5bb5cced87de106e88ac40 368 Pfam PF07730 Histidine kinase 170 234 1.2E-17 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_8224 1ae4fcaedc5bb5cced87de106e88ac40 368 PANTHER PTHR24421:SF26 36 364 1.9E-77 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 Gene3D G3DSA:2.60.120.260 406 587 2.0E-47 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2407 663b793283d649c5857fac6ee038b054 599 SUPERFAMILY SSF49785 453 589 4.46E-33 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2407 663b793283d649c5857fac6ee038b054 599 SMART SM00939 368 584 4.2E-37 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_2407 663b793283d649c5857fac6ee038b054 599 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 380 581 6.0E-38 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_2407 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 232 248 1.1E-12 T 19-04-2016 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 AMED_2407 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 64 73 1.1E-12 T 19-04-2016 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 AMED_2407 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 46 56 1.1E-12 T 19-04-2016 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 AMED_2407 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 552 567 1.1E-12 T 19-04-2016 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 AMED_2407 663b793283d649c5857fac6ee038b054 599 PRINTS PR00923 Lactococcus X-Pro dipeptidyl-peptidase (S15) family signature 30 42 1.1E-12 T 19-04-2016 IPR008252 Peptidase S15, X-Pro dipeptidyl-peptidase GO:0004177|GO:0006508 AMED_2407 663b793283d649c5857fac6ee038b054 599 Gene3D G3DSA:3.40.50.1820 300 405 4.3E-86 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2407 663b793283d649c5857fac6ee038b054 599 Gene3D G3DSA:3.40.50.1820 45 232 4.3E-86 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2407 663b793283d649c5857fac6ee038b054 599 SUPERFAMILY SSF53474 27 396 2.93E-76 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2407 663b793283d649c5857fac6ee038b054 599 PANTHER PTHR11731 289 388 5.2E-90 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 PANTHER PTHR11731 120 260 5.2E-90 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 PANTHER PTHR11731:SF148 45 93 5.2E-90 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 PANTHER PTHR11731:SF148 289 388 5.2E-90 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 PANTHER PTHR11731:SF148 120 260 5.2E-90 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 PANTHER PTHR11731 45 93 5.2E-90 T 19-04-2016 AMED_2407 663b793283d649c5857fac6ee038b054 599 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 60 353 4.2E-64 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 14 37 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 126 138 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 Gene3D G3DSA:1.10.510.10 72 252 1.4E-46 T 19-04-2016 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 PANTHER PTHR24362:SF160 2 290 1.2E-90 T 19-04-2016 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 Pfam PF00069 Protein kinase domain 13 252 9.1E-47 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 SUPERFAMILY SSF56112 4 258 5.13E-72 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8941 d3c47207fa08537a052b311d7064de6e 296 PANTHER PTHR24362 2 290 1.2E-90 T 19-04-2016 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 Gene3D G3DSA:3.30.200.20 3 71 4.2E-20 T 19-04-2016 AMED_8941 d3c47207fa08537a052b311d7064de6e 296 SMART SM00220 7 265 1.6E-53 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_7277 6426d21dc380051630a1123bf2af1b38 453 Gene3D G3DSA:1.20.1250.20 38 241 1.9E-41 T 19-04-2016 AMED_7277 6426d21dc380051630a1123bf2af1b38 453 Pfam PF07690 Major Facilitator Superfamily 50 389 5.0E-40 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7277 6426d21dc380051630a1123bf2af1b38 453 Gene3D G3DSA:1.20.1250.20 264 450 1.6E-19 T 19-04-2016 AMED_7277 6426d21dc380051630a1123bf2af1b38 453 PANTHER PTHR11662:SF3 10 449 1.1E-125 T 19-04-2016 AMED_7277 6426d21dc380051630a1123bf2af1b38 453 SUPERFAMILY SSF103473 31 451 4.32E-80 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7277 6426d21dc380051630a1123bf2af1b38 453 PANTHER PTHR11662 10 449 1.1E-125 T 19-04-2016 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 Gene3D G3DSA:3.40.1380.10 65 206 8.2E-41 T 19-04-2016 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 Gene3D G3DSA:1.10.287.80 220 253 2.6E-28 T 19-04-2016 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 Gene3D G3DSA:1.10.287.80 20 61 2.6E-28 T 19-04-2016 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 283 304 1.4E-35 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 75 94 1.4E-35 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 180 197 1.4E-35 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 PRINTS PR00126 ATP synthase gamma subunit signature 252 271 1.4E-35 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 Gene3D G3DSA:1.10.287.80 254 300 1.3E-25 T 19-04-2016 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 Hamap MF_00815 ATP synthase gamma chain [atpG]. 2 305 34.645 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 291 304 - T 19-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 SUPERFAMILY SSF52943 3 305 1.18E-82 T 19-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 Pfam PF00231 ATP synthase 4 305 9.7E-88 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 PANTHER PTHR11693 3 307 2.8E-104 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_7776 a883677a02a0c679be9a12288b9f9b5c 312 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 3 305 5.2E-99 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMED_2548 981ee76f9264f16b933e713538872b47 400 PANTHER PTHR11271 24 400 1.9E-81 T 19-04-2016 AMED_2548 981ee76f9264f16b933e713538872b47 400 SUPERFAMILY SSF51556 54 362 4.33E-95 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_2548 981ee76f9264f16b933e713538872b47 400 Gene3D G3DSA:2.30.40.10 362 399 2.5E-18 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2548 981ee76f9264f16b933e713538872b47 400 Gene3D G3DSA:2.30.40.10 3 55 2.5E-18 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2548 981ee76f9264f16b933e713538872b47 400 Pfam PF01979 Amidohydrolase family 50 396 2.1E-45 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_2548 981ee76f9264f16b933e713538872b47 400 Gene3D G3DSA:3.20.20.140 56 358 4.9E-91 T 19-04-2016 AMED_2548 981ee76f9264f16b933e713538872b47 400 PANTHER PTHR11271:SF33 24 400 1.9E-81 T 19-04-2016 AMED_2548 981ee76f9264f16b933e713538872b47 400 SUPERFAMILY SSF51338 362 399 3.24E-16 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2548 981ee76f9264f16b933e713538872b47 400 SUPERFAMILY SSF51338 3 54 3.24E-16 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1242 4551c8b093fd89209c89d3c6c2edf766 169 Pfam PF01863 Protein of unknown function DUF45 86 144 1.3E-20 T 19-04-2016 IPR002725 Protein of unknown function DUF45 AMED_1242 4551c8b093fd89209c89d3c6c2edf766 169 PANTHER PTHR30399 3 155 3.3E-24 T 19-04-2016 AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 PANTHER PTHR24220:SF85 5 244 9.5E-124 T 19-04-2016 AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 SUPERFAMILY SSF52540 4 233 1.18E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 Gene3D G3DSA:3.40.50.300 3 236 7.4E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 Pfam PF00005 ABC transporter 23 174 1.7E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 SMART SM00382 32 225 3.2E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 4 246 8.1E-105 T 19-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 AMED_2832 3928238d6eeb777f72b6be83784f8ead 256 PANTHER PTHR24220 5 244 9.5E-124 T 19-04-2016 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 Gene3D G3DSA:1.20.1250.20 249 433 2.9E-21 T 19-04-2016 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 Gene3D G3DSA:1.20.1250.20 20 230 3.4E-23 T 19-04-2016 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 PANTHER PTHR23508 12 431 1.4E-151 T 19-04-2016 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 Pfam PF00083 Sugar (and other) transporter 26 235 5.1E-27 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 PANTHER PTHR23508:SF1 12 431 1.4E-151 T 19-04-2016 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 Pfam PF07690 Major Facilitator Superfamily 296 429 5.8E-12 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6481 952e9ca37beceeae3882cf1c71900e30 445 SUPERFAMILY SSF103473 17 429 2.62E-66 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7468 b8769fbca0a81fb5fa8304fb98f0001d 135 Gene3D G3DSA:3.30.450.30 7 124 8.9E-25 T 19-04-2016 AMED_7468 b8769fbca0a81fb5fa8304fb98f0001d 135 Pfam PF03259 Roadblock/LC7 domain 7 97 7.6E-22 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_7468 b8769fbca0a81fb5fa8304fb98f0001d 135 SMART SM00960 7 97 2.4E-26 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_7468 b8769fbca0a81fb5fa8304fb98f0001d 135 SUPERFAMILY SSF103196 6 126 1.03E-30 T 19-04-2016 AMED_7468 b8769fbca0a81fb5fa8304fb98f0001d 135 PANTHER PTHR36222 7 135 1.5E-43 T 19-04-2016 AMED_6495 c7fdb11a9119b64ec0e41d96a9f5655b 210 PANTHER PTHR30353 1 210 7.1E-65 T 19-04-2016 IPR032818 DedA family AMED_6495 c7fdb11a9119b64ec0e41d96a9f5655b 210 PANTHER PTHR30353:SF0 1 210 7.1E-65 T 19-04-2016 AMED_6495 c7fdb11a9119b64ec0e41d96a9f5655b 210 Pfam PF09335 SNARE associated Golgi protein 34 164 1.2E-17 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 ProSitePatterns PS00113 Adenylate kinase signature. 82 93 - T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 Pfam PF00406 Adenylate kinase 6 157 2.1E-50 T 19-04-2016 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PANTHER PTHR23359 1 183 3.0E-72 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 Gene3D G3DSA:3.40.50.300 3 179 2.0E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 SUPERFAMILY SSF52540 3 180 1.34E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 Hamap MF_00235 Adenylate kinase [adk]. 2 181 40.933 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 33 47 2.2E-29 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 130 145 2.2E-29 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 82 98 2.2E-29 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 5 18 2.2E-29 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_0700 ea6fcaaf5c5a660c9e661a5d7a58b73e 184 PRINTS PR00094 Adenylate kinase signature 147 161 2.2E-29 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 SUPERFAMILY SSF53187 98 399 4.89E-81 T 19-04-2016 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 287 300 6.7E-11 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 127 139 6.7E-11 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 228 236 6.7E-11 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 152 166 6.7E-11 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 Pfam PF00246 Zinc carboxypeptidase 111 387 2.9E-68 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 Gene3D G3DSA:3.40.630.10 98 398 2.7E-91 T 19-04-2016 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 SMART SM00631 101 386 2.2E-91 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 ProSitePatterns PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature. 152 174 - T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 ProSitePatterns PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature. 290 300 - T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_8762 22a410781c3fb3e0e2ff9899789a28e3 401 PANTHER PTHR11705 97 382 8.3E-80 T 19-04-2016 AMED_1341 1776b47d9dfc3a9621af7decb189359d 341 Gene3D G3DSA:3.40.1190.20 10 305 8.8E-56 T 19-04-2016 IPR029056 Ribokinase-like AMED_1341 1776b47d9dfc3a9621af7decb189359d 341 SUPERFAMILY SSF53613 9 302 2.49E-51 T 19-04-2016 IPR029056 Ribokinase-like AMED_1341 1776b47d9dfc3a9621af7decb189359d 341 PANTHER PTHR10584:SF157 7 327 3.9E-70 T 19-04-2016 AMED_1341 1776b47d9dfc3a9621af7decb189359d 341 PANTHER PTHR10584 7 327 3.9E-70 T 19-04-2016 AMED_1341 1776b47d9dfc3a9621af7decb189359d 341 Pfam PF00294 pfkB family carbohydrate kinase 148 292 1.6E-25 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_4200 92079e090627dd295f118c5434440ac0 319 Gene3D G3DSA:3.40.50.1820 34 314 4.6E-72 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4200 92079e090627dd295f118c5434440ac0 319 SUPERFAMILY SSF53474 58 312 5.94E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4200 92079e090627dd295f118c5434440ac0 319 Pfam PF07859 alpha/beta hydrolase fold 84 290 2.7E-51 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_4200 92079e090627dd295f118c5434440ac0 319 PANTHER PTHR23024 47 319 1.5E-62 T 19-04-2016 AMED_1732 6818b202c8ea42e81f7083c58c2d0278 159 Pfam PF05995 Cysteine dioxygenase type I 28 148 2.3E-20 T 19-04-2016 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|UniPathway: UPA00012 AMED_1732 6818b202c8ea42e81f7083c58c2d0278 159 Gene3D G3DSA:2.60.120.10 33 155 1.9E-20 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1732 6818b202c8ea42e81f7083c58c2d0278 159 SUPERFAMILY SSF51182 12 155 1.08E-27 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 Pfam PF12698 ABC-2 family transporter protein 407 610 3.2E-14 T 19-04-2016 AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 Pfam PF12698 ABC-2 family transporter protein 24 161 2.2E-8 T 19-04-2016 AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 205 230 2.9E-6 T 19-04-2016 IPR023908 xxxLxxG heptad repeat AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 344 371 7.4E-9 T 19-04-2016 IPR023908 xxxLxxG heptad repeat AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 412 619 1.8E-60 T 19-04-2016 IPR017501 Phage infection protein, YhgE, C-terminal AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 PANTHER PTHR30294 1 207 3.3E-45 T 19-04-2016 AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 PANTHER PTHR30294 428 628 3.3E-45 T 19-04-2016 AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 PANTHER PTHR30294:SF4 1 207 3.3E-45 T 19-04-2016 AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 PANTHER PTHR30294:SF4 428 628 3.3E-45 T 19-04-2016 AMED_6132 7999a33dfd7f12c21d938e608f8c8194 632 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 9 171 2.0E-52 T 19-04-2016 IPR017500 Phage infection protein, YhgE, N-terminal AMED_0773 fcc821f508f4184845b366678626ef1d 377 PANTHER PTHR11911 220 308 1.1E-13 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 PANTHER PTHR11911:SF85 151 204 1.1E-13 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 PANTHER PTHR11911:SF85 220 308 1.1E-13 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 SMART SM01240 15 377 9.3E-16 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 Gene3D G3DSA:3.20.20.70 11 376 1.7E-69 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0773 fcc821f508f4184845b366678626ef1d 377 PANTHER PTHR11911 151 204 1.1E-13 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 SUPERFAMILY SSF51412 9 78 2.44E-59 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 SUPERFAMILY SSF51412 119 376 2.44E-59 T 19-04-2016 AMED_0773 fcc821f508f4184845b366678626ef1d 377 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 18 307 8.8E-35 T 19-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 AMED_0773 fcc821f508f4184845b366678626ef1d 377 TIGRFAM TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein 5 375 1.6E-164 T 19-04-2016 IPR005992 IMP dehydrogenase-related 2 GO:0016491|GO:0055114 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_7019 d6e84cde984c72873acb366288d402ed 169 SUPERFAMILY SSF46785 4 164 6.98E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7019 d6e84cde984c72873acb366288d402ed 169 PANTHER PTHR33169 3 138 3.3E-18 T 19-04-2016 AMED_7019 d6e84cde984c72873acb366288d402ed 169 Pfam PF03551 Transcriptional regulator PadR-like family 7 78 1.2E-16 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_7019 d6e84cde984c72873acb366288d402ed 169 Gene3D G3DSA:1.10.10.10 3 83 5.0E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7019 d6e84cde984c72873acb366288d402ed 169 PANTHER PTHR33169:SF11 3 138 3.3E-18 T 19-04-2016 AMED_5027 51a3b22d355edcf49d14e6a15f1d70da 155 SUPERFAMILY SSF109854 3 150 1.83E-34 T 19-04-2016 AMED_5027 51a3b22d355edcf49d14e6a15f1d70da 155 Gene3D G3DSA:1.20.120.450 3 154 9.0E-38 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_5027 51a3b22d355edcf49d14e6a15f1d70da 155 Pfam PF04978 Protein of unknown function (DUF664) 9 151 9.7E-36 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 PANTHER PTHR30173:SF22 1 245 2.8E-75 T 19-04-2016 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 SUPERFAMILY SSF54427 192 254 6.86E-7 T 19-04-2016 IPR032710 NTF2-like domain AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 SUPERFAMILY SSF88946 15 89 3.4E-21 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 Pfam PF08281 Sigma-70, region 4 135 188 6.0E-18 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 SUPERFAMILY SSF88659 132 190 4.3E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 Gene3D G3DSA:1.10.10.10 131 190 1.9E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 Gene3D G3DSA:3.10.450.50 202 283 2.9E-8 T 19-04-2016 IPR032710 NTF2-like domain AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 189 1.0E-24 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 Pfam PF04542 Sigma-70 region 2 22 86 3.9E-18 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 PANTHER PTHR30173 1 245 2.8E-75 T 19-04-2016 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 Gene3D G3DSA:1.10.1740.10 15 90 8.5E-25 T 19-04-2016 AMED_3183 667bf4d7019307d7d2fad441e5244b76 297 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 22 254 3.1E-80 T 19-04-2016 IPR014305 RNA polymerase sigma-G type, actinobacteria AMED_6061 7445917edb427d2871af609d37711975 252 Gene3D G3DSA:1.10.10.10 2 72 2.9E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6061 7445917edb427d2871af609d37711975 252 SUPERFAMILY SSF55781 57 245 5.36E-50 T 19-04-2016 IPR029016 GAF domain-like AMED_6061 7445917edb427d2871af609d37711975 252 Pfam PF09339 IclR helix-turn-helix domain 4 53 3.8E-12 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6061 7445917edb427d2871af609d37711975 252 Pfam PF01614 Bacterial transcriptional regulator 117 240 1.0E-31 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_6061 7445917edb427d2871af609d37711975 252 SUPERFAMILY SSF46785 3 73 3.86E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6061 7445917edb427d2871af609d37711975 252 Gene3D G3DSA:3.30.450.40 73 245 1.4E-57 T 19-04-2016 IPR029016 GAF domain-like AMED_6061 7445917edb427d2871af609d37711975 252 SMART SM00346 2 89 3.5E-20 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6061 7445917edb427d2871af609d37711975 252 PANTHER PTHR30136 3 216 1.2E-71 T 19-04-2016 AMED_6061 7445917edb427d2871af609d37711975 252 PANTHER PTHR30136:SF2 3 216 1.2E-71 T 19-04-2016 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PANTHER PTHR19370 3 237 2.4E-48 T 19-04-2016 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 199 207 1.3E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 139 148 1.3E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 1.3E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 57 64 1.3E-7 T 19-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 SUPERFAMILY SSF52343 96 229 1.57E-31 T 19-04-2016 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 Gene3D G3DSA:2.40.30.10 5 106 1.5E-26 T 19-04-2016 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 292 300 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 1.7E-10 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 37 49 1.7E-10 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 PRINTS PR00410 Phenol hydroxylase reductase family signature 199 207 1.7E-10 T 19-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 Gene3D G3DSA:3.40.50.80 112 227 5.8E-30 T 19-04-2016 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 262 334 6.3E-14 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 SUPERFAMILY SSF63380 4 105 2.94E-24 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 Gene3D G3DSA:3.10.20.30 228 340 2.5E-32 T 19-04-2016 IPR012675 Beta-grasp domain AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 Pfam PF00175 Oxidoreductase NAD-binding domain 117 213 3.4E-12 T 19-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 Pfam PF00970 Oxidoreductase FAD-binding domain 9 105 4.1E-10 T 19-04-2016 IPR008333 Oxidoreductase, FAD-binding domain AMED_2517 b611ce4573eb8348ca31c13e4b8c7052 344 SUPERFAMILY SSF54292 221 338 7.21E-27 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_8165 d7710d2135cd9e1ac17e8dd3458b6b47 130 PANTHER PTHR30173 1 128 2.9E-15 T 19-04-2016 AMED_8165 d7710d2135cd9e1ac17e8dd3458b6b47 130 Pfam PF08281 Sigma-70, region 4 66 120 1.2E-13 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8165 d7710d2135cd9e1ac17e8dd3458b6b47 130 SUPERFAMILY SSF88659 65 125 3.92E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8165 d7710d2135cd9e1ac17e8dd3458b6b47 130 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 124 5.4E-15 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8165 d7710d2135cd9e1ac17e8dd3458b6b47 130 Gene3D G3DSA:1.10.1740.10 3 45 4.2E-5 T 19-04-2016 AMED_8165 d7710d2135cd9e1ac17e8dd3458b6b47 130 Gene3D G3DSA:1.10.10.10 64 126 6.4E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4903 16a1d4b2db845504b00ea560c146cb78 278 Pfam PF12294 Protein of unknown function (DUF3626) 31 151 2.1E-36 T 19-04-2016 IPR022074 Protein of unknown function DUF3626 AMED_4903 16a1d4b2db845504b00ea560c146cb78 278 Pfam PF12294 Protein of unknown function (DUF3626) 158 264 1.5E-23 T 19-04-2016 IPR022074 Protein of unknown function DUF3626 AMED_3628 3140ea0cdf4e8cc1a503e4aee62e52c4 85 Gene3D G3DSA:1.10.1200.10 8 79 8.2E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3628 3140ea0cdf4e8cc1a503e4aee62e52c4 85 SUPERFAMILY SSF47336 7 81 4.97E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3628 3140ea0cdf4e8cc1a503e4aee62e52c4 85 Pfam PF00550 Phosphopantetheine attachment site 9 77 2.0E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 SUPERFAMILY SSF54897 35 175 8.5E-32 T 19-04-2016 IPR009020 Proteinase inhibitor, propeptide AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 Gene3D G3DSA:3.40.50.200 234 614 3.5E-67 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 Pfam PF00082 Subtilase family 313 543 1.4E-5 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 PANTHER PTHR14218 1 436 1.7E-52 T 19-04-2016 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 PANTHER PTHR14218 454 613 1.7E-52 T 19-04-2016 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 524 534 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 SMART SM00944 39 177 1.7E-36 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 PANTHER PTHR14218:SF15 1 436 1.7E-52 T 19-04-2016 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 PANTHER PTHR14218:SF15 454 613 1.7E-52 T 19-04-2016 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 SUPERFAMILY SSF52743 236 614 3.67E-47 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_5100 6c047bd16161a48c63d62e70a1464de3 626 Pfam PF09286 Pro-kumamolisin, activation domain 43 175 3.4E-24 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_0970 c33fc57d53689aeb92b7ef3b774917fd 366 SUPERFAMILY SSF55874 249 363 4.68E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0970 c33fc57d53689aeb92b7ef3b774917fd 366 PANTHER PTHR24421 30 365 2.6E-83 T 19-04-2016 AMED_0970 c33fc57d53689aeb92b7ef3b774917fd 366 Pfam PF07730 Histidine kinase 171 236 1.1E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_0970 c33fc57d53689aeb92b7ef3b774917fd 366 PANTHER PTHR24421:SF26 30 365 2.6E-83 T 19-04-2016 AMED_0970 c33fc57d53689aeb92b7ef3b774917fd 366 Gene3D G3DSA:3.30.565.10 279 364 4.6E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2781 1f62032f6f4a27551b8ebe90a2e3acd3 330 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 22 105 4.4E-23 T 19-04-2016 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain AMED_2781 1f62032f6f4a27551b8ebe90a2e3acd3 330 PANTHER PTHR37307 2 323 6.2E-112 T 19-04-2016 AMED_2781 1f62032f6f4a27551b8ebe90a2e3acd3 330 Pfam PF14527 WhiA LAGLIDADG-like domain 128 219 2.0E-24 T 19-04-2016 AMED_2781 1f62032f6f4a27551b8ebe90a2e3acd3 330 Pfam PF02650 WhiA C-terminal HTH domain 222 304 5.9E-19 T 19-04-2016 IPR023054 Sporulation regulator WhiA, C-terminal AMED_2781 1f62032f6f4a27551b8ebe90a2e3acd3 330 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 305 2.9E-102 T 19-04-2016 AMED_2781 1f62032f6f4a27551b8ebe90a2e3acd3 330 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 307 28.479 T 19-04-2016 IPR003802 Sporulation regulator WhiA GO:0043937 AMED_7084 45e221d3f4620c81dd79bc0d51714ae0 347 Pfam PF03734 L,D-transpeptidase catalytic domain 199 318 1.0E-17 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_7084 45e221d3f4620c81dd79bc0d51714ae0 347 PANTHER PTHR30582:SF2 1 344 3.7E-80 T 19-04-2016 AMED_7084 45e221d3f4620c81dd79bc0d51714ae0 347 PANTHER PTHR30582 1 344 3.7E-80 T 19-04-2016 AMED_7084 45e221d3f4620c81dd79bc0d51714ae0 347 Gene3D G3DSA:2.40.440.10 198 319 3.7E-22 T 19-04-2016 AMED_7084 45e221d3f4620c81dd79bc0d51714ae0 347 SUPERFAMILY SSF141523 192 318 5.36E-30 T 19-04-2016 AMED_4934 103e0c36da48810d05f84a24aa4bc5f9 465 Pfam PF00158 Sigma-54 interaction domain 171 229 1.4E-5 T 19-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMED_4934 103e0c36da48810d05f84a24aa4bc5f9 465 PANTHER PTHR30267:SF3 5 463 2.4E-180 T 19-04-2016 AMED_4934 103e0c36da48810d05f84a24aa4bc5f9 465 PANTHER PTHR30267 5 463 2.4E-180 T 19-04-2016 AMED_4934 103e0c36da48810d05f84a24aa4bc5f9 465 SUPERFAMILY SSF52540 44 321 3.04E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4934 103e0c36da48810d05f84a24aa4bc5f9 465 Gene3D G3DSA:3.40.50.300 45 247 1.7E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4554 8d024400dc930847479a9cb8dd28ad34 310 PANTHER PTHR32208 97 279 6.8E-29 T 19-04-2016 AMED_4554 8d024400dc930847479a9cb8dd28ad34 310 Pfam PF09362 Domain of unknown function (DUF1996) 53 265 8.2E-47 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_4554 8d024400dc930847479a9cb8dd28ad34 310 PANTHER PTHR32208:SF28 97 279 6.8E-29 T 19-04-2016 AMED_5184 b2ed59415bfd0f8deae0f9c5e1397414 458 SUPERFAMILY SSF48452 339 450 1.44E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 PANTHER PTHR11351 19 304 1.4E-120 T 19-04-2016 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 Pfam PF00487 Fatty acid desaturase 47 266 8.3E-21 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 47 69 2.3E-19 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 250 264 2.3E-19 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 207 228 2.3E-19 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 PRINTS PR00075 Fatty acid desaturase family 1 signature 70 90 2.3E-19 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_2823 143ad54ab813b5242e8afa4963dd1b5f 305 PANTHER PTHR11351:SF3 19 304 1.4E-120 T 19-04-2016 AMED_6240 b7ffd9132811a9428d627a72e36a4e3d 376 Gene3D G3DSA:3.75.10.10 7 371 1.7E-123 T 19-04-2016 AMED_6240 b7ffd9132811a9428d627a72e36a4e3d 376 SUPERFAMILY SSF55909 6 372 7.69E-89 T 19-04-2016 AMED_6240 b7ffd9132811a9428d627a72e36a4e3d 376 PANTHER PTHR10488 7 372 1.0E-115 T 19-04-2016 IPR033195 Glycine/inosamine-phosphate amidinotransferase GO:0015067 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 SUPERFAMILY SSF103473 3 184 3.14E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 SUPERFAMILY SSF103473 232 444 3.14E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 ProSitePatterns PS00216 Sugar transport proteins signature 1. 59 75 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 99 119 1.4E-5 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 8 32 1.4E-5 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 153 1.4E-5 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 154 178 1.4E-5 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 383 402 1.4E-5 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 Gene3D G3DSA:1.20.1250.20 248 451 2.9E-19 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 Gene3D G3DSA:1.20.1250.20 3 181 2.7E-24 T 19-04-2016 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 Pfam PF07690 Major Facilitator Superfamily 9 392 1.8E-41 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3366 1feb9dbacd1ffe8f7b81281a611892e7 461 PANTHER PTHR23501 3 459 3.0E-76 T 19-04-2016 AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Pfam PF16363 GDP-mannose 4,6 dehydratase 1 310 1.3E-123 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Gene3D G3DSA:3.90.25.10 184 316 7.6E-48 T 19-04-2016 AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 PANTHER PTHR10366 1 316 1.5E-170 T 19-04-2016 AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 1 320 50.461 T 19-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 Gene3D G3DSA:3.40.50.720 1 181 1.4E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 1 316 2.8E-128 T 19-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 PANTHER PTHR10366:SF32 1 316 1.5E-170 T 19-04-2016 AMED_0115 6df8466e3ee8c7fa6b8b439ecfcbfc24 327 SUPERFAMILY SSF51735 1 315 2.67E-71 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0639 cbde90624c97408ba45402e7cfea5507 381 Gene3D G3DSA:3.40.50.2000 213 360 4.7E-16 T 19-04-2016 AMED_0639 cbde90624c97408ba45402e7cfea5507 381 Pfam PF06722 Protein of unknown function (DUF1205) 171 264 5.5E-36 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_0639 cbde90624c97408ba45402e7cfea5507 381 Gene3D G3DSA:3.40.50.2000 13 181 3.5E-16 T 19-04-2016 AMED_0639 cbde90624c97408ba45402e7cfea5507 381 SUPERFAMILY SSF53756 2 378 5.76E-57 T 19-04-2016 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 Gene3D G3DSA:1.20.120.220 84 258 1.6E-34 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 29 255 2.2E-37 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 SUPERFAMILY SSF81336 84 254 4.32E-31 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 PANTHER PTHR11410 33 261 7.2E-48 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 Hamap MF_01393 ATP synthase subunit a [atpB]. 17 260 12.398 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 PRINTS PR00123 ATP synthase A subunit signature 240 255 8.3E-17 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 PRINTS PR00123 ATP synthase A subunit signature 178 200 8.3E-17 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 PRINTS PR00123 ATP synthase A subunit signature 92 108 8.3E-17 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 PANTHER PTHR11410:SF7 33 261 7.2E-48 T 19-04-2016 AMED_7781 be955c26a9bef49b811e248c39629f3c 261 Pfam PF00119 ATP synthase A chain 34 253 7.0E-47 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMED_8889 6109910863c88a8885cbd7dad1a4251e 129 Pfam PF09335 SNARE associated Golgi protein 8 91 1.1E-8 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_0434 74c56bd42be00c29d163aa4d17e96b0c 248 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 167 247 1.1E-20 T 19-04-2016 AMED_0434 74c56bd42be00c29d163aa4d17e96b0c 248 SUPERFAMILY SSF55166 94 246 7.77E-25 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 SMART SM00342 231 314 6.4E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 Pfam PF12833 Helix-turn-helix domain 237 316 9.4E-19 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 Gene3D G3DSA:1.10.10.60 214 268 9.9E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 PANTHER PTHR11019 1 317 5.2E-117 T 19-04-2016 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 SUPERFAMILY SSF52317 7 196 5.67E-38 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 Gene3D G3DSA:3.40.50.880 7 194 2.8E-41 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 Gene3D G3DSA:1.10.10.60 269 317 1.2E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 SUPERFAMILY SSF46689 217 265 2.42E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 SUPERFAMILY SSF46689 268 317 9.32E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 PANTHER PTHR11019:SF68 1 317 5.2E-117 T 19-04-2016 AMED_7650 0b3d24224bc6962339b90a0e2cbad38c 321 Pfam PF01965 DJ-1/PfpI family 70 175 3.0E-11 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_5271 35698aadbaddaeaeadf0bde4a80d1885 438 SMART SM00387 166 277 1.4E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5271 35698aadbaddaeaeadf0bde4a80d1885 438 Gene3D G3DSA:3.30.565.10 136 275 5.5E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5271 35698aadbaddaeaeadf0bde4a80d1885 438 PANTHER PTHR24423 75 274 4.3E-24 T 19-04-2016 AMED_5271 35698aadbaddaeaeadf0bde4a80d1885 438 PANTHER PTHR24423:SF468 75 274 4.3E-24 T 19-04-2016 AMED_5271 35698aadbaddaeaeadf0bde4a80d1885 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 170 275 5.3E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5271 35698aadbaddaeaeadf0bde4a80d1885 438 SUPERFAMILY SSF55874 159 275 5.5E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4701 0c6bb9dd5361921fce5c4b7f16d5b17f 254 Pfam PF00561 alpha/beta hydrolase fold 20 118 6.8E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4701 0c6bb9dd5361921fce5c4b7f16d5b17f 254 PANTHER PTHR10992 3 130 7.7E-17 T 19-04-2016 AMED_4701 0c6bb9dd5361921fce5c4b7f16d5b17f 254 PANTHER PTHR10992 151 253 7.7E-17 T 19-04-2016 AMED_4701 0c6bb9dd5361921fce5c4b7f16d5b17f 254 Gene3D G3DSA:3.40.50.1820 2 252 1.4E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4701 0c6bb9dd5361921fce5c4b7f16d5b17f 254 SUPERFAMILY SSF53474 2 252 8.86E-28 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4609 d5db2af77564d45513f439f685125ea2 278 Gene3D G3DSA:3.40.50.720 1 237 7.2E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.5E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PANTHER PTHR24322 11 188 8.8E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.6E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.6E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.6E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.6E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 8.6E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 8.6E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4609 d5db2af77564d45513f439f685125ea2 278 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 0.0072 T 19-04-2016 AMED_4609 d5db2af77564d45513f439f685125ea2 278 SUPERFAMILY SSF51735 1 237 3.4E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4609 d5db2af77564d45513f439f685125ea2 278 Pfam PF00106 short chain dehydrogenase 8 186 5.9E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5547 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 Gene3D G3DSA:3.40.50.1820 3 71 2.9E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5547 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 PANTHER PTHR23024:SF181 9 74 5.7E-21 T 19-04-2016 AMED_5547 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 Pfam PF07859 alpha/beta hydrolase fold 2 70 1.5E-22 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_5547 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 SUPERFAMILY SSF53474 3 77 1.27E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5547 32b9b11cd5ec20ebcdd5d0d2d392bc97 102 PANTHER PTHR23024 9 74 5.7E-21 T 19-04-2016 AMED_3140 139d137916989fc3f92de180e897adeb 407 Gene3D G3DSA:1.20.140.10 238 401 4.6E-46 T 19-04-2016 AMED_3140 139d137916989fc3f92de180e897adeb 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 129 6.8E-12 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3140 139d137916989fc3f92de180e897adeb 407 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 397 2.2E-35 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3140 139d137916989fc3f92de180e897adeb 407 PANTHER PTHR10909 1 401 1.6E-206 T 19-04-2016 AMED_3140 139d137916989fc3f92de180e897adeb 407 Gene3D G3DSA:1.10.540.10 1 131 5.3E-31 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3140 139d137916989fc3f92de180e897adeb 407 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 235 1.3E-22 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3140 139d137916989fc3f92de180e897adeb 407 Gene3D G3DSA:2.40.110.10 132 237 3.2E-41 T 19-04-2016 AMED_3140 139d137916989fc3f92de180e897adeb 407 SUPERFAMILY SSF47203 245 402 3.7E-43 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3140 139d137916989fc3f92de180e897adeb 407 PANTHER PTHR10909:SF282 1 401 1.6E-206 T 19-04-2016 AMED_3140 139d137916989fc3f92de180e897adeb 407 SUPERFAMILY SSF56645 1 260 5.1E-66 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_6847 ab39e65723633c8021f05b46cea110f9 216 Pfam PF05988 Bacterial protein of unknown function (DUF899) 1 216 2.1E-69 T 19-04-2016 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMED_6847 ab39e65723633c8021f05b46cea110f9 216 Gene3D G3DSA:3.40.30.10 48 181 1.2E-7 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6847 ab39e65723633c8021f05b46cea110f9 216 SUPERFAMILY SSF52833 48 171 9.86E-8 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1839 d8437f658c3a487e654a89381002dba9 248 SMART SM00895 92 214 6.4E-22 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1839 d8437f658c3a487e654a89381002dba9 248 PANTHER PTHR11751 86 108 3.1E-25 T 19-04-2016 AMED_1839 d8437f658c3a487e654a89381002dba9 248 PANTHER PTHR11751 8 69 3.1E-25 T 19-04-2016 AMED_1839 d8437f658c3a487e654a89381002dba9 248 SUPERFAMILY SSF46785 1 70 2.93E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1839 d8437f658c3a487e654a89381002dba9 248 Gene3D G3DSA:1.10.10.10 2 70 4.1E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1839 d8437f658c3a487e654a89381002dba9 248 SMART SM00345 7 66 9.7E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1839 d8437f658c3a487e654a89381002dba9 248 Pfam PF07729 FCD domain 92 213 4.0E-25 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1839 d8437f658c3a487e654a89381002dba9 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 9.1E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1839 d8437f658c3a487e654a89381002dba9 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 9.1E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1839 d8437f658c3a487e654a89381002dba9 248 Gene3D G3DSA:1.20.120.530 88 223 5.2E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1839 d8437f658c3a487e654a89381002dba9 248 SUPERFAMILY SSF48008 89 223 4.71E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1839 d8437f658c3a487e654a89381002dba9 248 PANTHER PTHR11751:SF342 86 108 3.1E-25 T 19-04-2016 AMED_1839 d8437f658c3a487e654a89381002dba9 248 PANTHER PTHR11751:SF342 8 69 3.1E-25 T 19-04-2016 AMED_1839 d8437f658c3a487e654a89381002dba9 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 66 4.7E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6347 068fae3a911f94a70e6f808bee0bf51c 64 Gene3D G3DSA:1.10.357.10 2 40 2.4E-12 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6347 068fae3a911f94a70e6f808bee0bf51c 64 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 40 4.6E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6347 068fae3a911f94a70e6f808bee0bf51c 64 SUPERFAMILY SSF46689 2 41 1.55E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4224 79783b80ae0314ade26364921c6914c6 94 SUPERFAMILY SSF141099 10 84 1.7E-18 T 19-04-2016 IPR015073 Atu1913-like AMED_4224 79783b80ae0314ade26364921c6914c6 94 Gene3D G3DSA:4.10.1210.10 4 93 9.0E-26 T 19-04-2016 IPR015073 Atu1913-like AMED_4224 79783b80ae0314ade26364921c6914c6 94 Pfam PF08980 Domain of unknown function (DUF1883) 12 93 1.6E-18 T 19-04-2016 IPR015073 Atu1913-like AMED_9033 20423c21a8f2c49089dc2aa30d44f9f1 138 Gene3D G3DSA:3.30.160.200 6 104 4.7E-27 T 19-04-2016 AMED_9033 20423c21a8f2c49089dc2aa30d44f9f1 138 SUPERFAMILY SSF75620 7 102 3.92E-11 T 19-04-2016 AMED_9033 20423c21a8f2c49089dc2aa30d44f9f1 138 PANTHER PTHR11075 9 133 4.9E-30 T 19-04-2016 AMED_9033 20423c21a8f2c49089dc2aa30d44f9f1 138 Pfam PF00472 RF-1 domain 7 132 4.2E-23 T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 260 346 9.0E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 Pfam PF07730 Histidine kinase 153 218 2.0E-11 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 PANTHER PTHR24421 152 347 3.5E-32 T 19-04-2016 AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 PANTHER PTHR24421:SF1 152 347 3.5E-32 T 19-04-2016 AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 Gene3D G3DSA:3.30.565.10 202 217 1.9E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 Gene3D G3DSA:3.30.565.10 254 347 1.9E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 SUPERFAMILY SSF55874 243 347 1.09E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3152 a42e1aabac574b53062b3eb6b40760dd 354 SMART SM00387 256 351 2.3E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PANTHER PTHR23501:SF7 3 413 1.1E-95 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 Gene3D G3DSA:1.20.1250.20 238 416 1.4E-24 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 Pfam PF07690 Major Facilitator Superfamily 8 381 3.6E-49 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 7 31 5.8E-9 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 95 115 5.8E-9 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 125 149 5.8E-9 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 209 227 5.8E-9 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 242 267 5.8E-9 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PRINTS PR01036 Tetracycline resistance protein TetB signature 372 391 5.8E-9 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 Gene3D G3DSA:1.20.1250.20 3 170 5.3E-20 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 PANTHER PTHR23501 3 413 1.1E-95 T 19-04-2016 AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 SUPERFAMILY SSF103473 3 183 5.23E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8338 22018a6229bcc95bbb58015bc8cc5158 424 SUPERFAMILY SSF103473 223 416 5.23E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2532 c08d00abb7b06119cc61be285fa6bb88 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 132 1.4E-11 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_2532 c08d00abb7b06119cc61be285fa6bb88 136 PANTHER PTHR21366 1 134 6.0E-40 T 19-04-2016 AMED_2532 c08d00abb7b06119cc61be285fa6bb88 136 Gene3D G3DSA:3.10.180.10 1 134 2.6E-28 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2532 c08d00abb7b06119cc61be285fa6bb88 136 SUPERFAMILY SSF54593 6 133 2.69E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2532 c08d00abb7b06119cc61be285fa6bb88 136 PANTHER PTHR21366:SF12 1 134 6.0E-40 T 19-04-2016 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF04545 Sigma-70, region 4 402 455 1.2E-18 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.10.10 397 467 1.8E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 SUPERFAMILY SSF88659 366 466 2.62E-26 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF04539 Sigma-70 region 3 313 388 1.5E-28 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 230 455 2.5E-35 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 SUPERFAMILY SSF88659 307 380 1.11E-22 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PANTHER PTHR30603:SF0 62 467 2.3E-227 T 19-04-2016 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF04542 Sigma-70 region 2 234 303 1.7E-22 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 SUPERFAMILY SSF88946 162 304 1.05E-54 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PANTHER PTHR30603 62 467 2.3E-227 T 19-04-2016 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 427 453 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 258 271 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Pfam PF00140 Sigma-70 factor, region 1.2 165 198 4.1E-16 T 19-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.601.10 71 303 4.5E-63 T 19-04-2016 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 230 466 7.2E-114 T 19-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 28 467 33.03 T 19-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 282 290 2.7E-29 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 258 271 2.7E-29 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 442 453 2.7E-29 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 406 418 2.7E-29 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 PRINTS PR00046 Major sigma-70 factor signature 427 442 2.7E-29 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2601 7eea8f73a9485ef3279cc60c50a93ee5 467 Gene3D G3DSA:1.10.10.10 307 358 3.4E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8100 8771c4e097afbc5e8fe8f3bb65242b4c 277 SUPERFAMILY SSF160424 11 143 1.44E-13 T 19-04-2016 IPR006728 Protein of unknown function DUF600 AMED_3687 7745c10fb238d7fa803b3011ddb0ac90 232 PANTHER PTHR30040 1 226 1.2E-31 T 19-04-2016 AMED_3687 7745c10fb238d7fa803b3011ddb0ac90 232 SUPERFAMILY SSF143631 1 225 2.35E-43 T 19-04-2016 IPR003374 ApbE-like domain AMED_3687 7745c10fb238d7fa803b3011ddb0ac90 232 Pfam PF02424 ApbE family 1 84 8.3E-9 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_3687 7745c10fb238d7fa803b3011ddb0ac90 232 Pfam PF02424 ApbE family 91 219 2.2E-22 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_1189 3b957781d88bbad2b03c73059ef1e0a3 333 PANTHER PTHR21666 206 312 8.8E-27 T 19-04-2016 AMED_1189 3b957781d88bbad2b03c73059ef1e0a3 333 SUPERFAMILY SSF54001 204 318 4.58E-34 T 19-04-2016 AMED_1189 3b957781d88bbad2b03c73059ef1e0a3 333 Pfam PF00877 NlpC/P60 family 223 312 3.0E-23 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_1189 3b957781d88bbad2b03c73059ef1e0a3 333 Gene3D G3DSA:3.90.1720.10 206 318 1.7E-37 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 PANTHER PTHR23537 10 373 1.1E-39 T 19-04-2016 AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 Pfam PF00561 alpha/beta hydrolase fold 391 493 9.0E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 SUPERFAMILY SSF53474 390 605 6.21E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 Gene3D G3DSA:3.40.50.1820 390 607 5.5E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 PANTHER PTHR23537:SF1 10 373 1.1E-39 T 19-04-2016 AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 Gene3D G3DSA:1.20.1250.20 187 373 1.2E-21 T 19-04-2016 AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 8 360 1.5E-58 T 19-04-2016 IPR010645 Uncharacterised MFS-type transporter YbfB AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 SUPERFAMILY SSF103473 9 373 4.58E-38 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8171 48b5f0313659b73886e60ab47cff15aa 615 Gene3D G3DSA:1.20.1250.20 9 170 2.0E-15 T 19-04-2016 AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 SUPERFAMILY SSF56235 20 278 1.63E-62 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 PANTHER PTHR11907:SF0 17 480 1.4E-222 T 19-04-2016 AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 Pfam PF13522 Glutamine amidotransferase domain 77 220 1.1E-16 T 19-04-2016 AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 Gene3D G3DSA:3.60.20.10 20 267 2.2E-63 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 19 468 46.026 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 Gene3D G3DSA:3.40.50.2020 283 448 2.7E-43 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 SUPERFAMILY SSF53271 261 475 9.7E-67 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 PANTHER PTHR11907 17 480 1.4E-222 T 19-04-2016 AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 PIRSF PIRSF000485 16 479 2.7E-158 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMED_9035 59aab68a3e43e13cc51b07ad16663b9d 508 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 20 467 2.2E-157 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 Gene3D G3DSA:3.10.290.10 8 72 6.8E-23 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 PANTHER PTHR21600 9 250 7.5E-69 T 19-04-2016 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 SMART SM00363 10 67 1.2E-9 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 Pfam PF01479 S4 domain 10 54 1.3E-13 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 PANTHER PTHR21600:SF2 9 250 7.5E-69 T 19-04-2016 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 76 237 1.6E-37 T 19-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 Pfam PF00849 RNA pseudouridylate synthase 72 205 3.1E-18 T 19-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 112 126 - T 19-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 SUPERFAMILY SSF55120 58 248 4.0E-41 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6006 1880c2677d01353e12c91fa2092bd4ac 250 SUPERFAMILY SSF55174 8 67 2.94E-14 T 19-04-2016 AMED_6033 992398e04a5905ede08340a46d2e9430 212 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 6 198 31.112 T 19-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 AMED_6033 992398e04a5905ede08340a46d2e9430 212 PANTHER PTHR10429:SF0 1 212 6.1E-62 T 19-04-2016 AMED_6033 992398e04a5905ede08340a46d2e9430 212 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 17 195 4.6E-61 T 19-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 AMED_6033 992398e04a5905ede08340a46d2e9430 212 SUPERFAMILY SSF50486 10 203 1.1E-57 T 19-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AMED_6033 992398e04a5905ede08340a46d2e9430 212 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 11 198 7.9E-54 T 19-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 AMED_6033 992398e04a5905ede08340a46d2e9430 212 Gene3D G3DSA:3.10.300.10 12 205 2.3E-64 T 19-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 AMED_6033 992398e04a5905ede08340a46d2e9430 212 PANTHER PTHR10429 1 212 6.1E-62 T 19-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 AMED_5889 47e5602cd97e782b2450479092013201 527 SUPERFAMILY SSF81606 324 521 1.57E-11 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5889 47e5602cd97e782b2450479092013201 527 Pfam PF13185 GAF domain 134 282 2.9E-8 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5889 47e5602cd97e782b2450479092013201 527 PANTHER PTHR21021 280 527 1.5E-52 T 19-04-2016 AMED_5889 47e5602cd97e782b2450479092013201 527 SMART SM00065 135 291 1.1E-6 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5889 47e5602cd97e782b2450479092013201 527 SMART SM00331 311 521 5.4E-38 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5889 47e5602cd97e782b2450479092013201 527 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 338 521 3.4E-41 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5889 47e5602cd97e782b2450479092013201 527 SUPERFAMILY SSF55781 118 298 1.35E-19 T 19-04-2016 IPR029016 GAF domain-like AMED_5889 47e5602cd97e782b2450479092013201 527 Gene3D G3DSA:3.30.450.40 110 297 2.1E-19 T 19-04-2016 IPR029016 GAF domain-like AMED_5889 47e5602cd97e782b2450479092013201 527 PANTHER PTHR21021:SF19 280 527 1.5E-52 T 19-04-2016 AMED_9015 7a19409fa568a697fd0adda290806b2a 204 Hamap MF_01297 UPF0678 fatty acid-binding protein-like protein . 41 203 33.274 T 19-04-2016 IPR022939 Uncharacterised protein family UPF0678 AMED_9015 7a19409fa568a697fd0adda290806b2a 204 PANTHER PTHR15854:SF6 7 204 8.3E-58 T 19-04-2016 AMED_9015 7a19409fa568a697fd0adda290806b2a 204 PANTHER PTHR15854 7 204 8.3E-58 T 19-04-2016 AMED_9015 7a19409fa568a697fd0adda290806b2a 204 Pfam PF08768 Domain of unknown function (DUF1794) 50 201 1.2E-51 T 19-04-2016 IPR014878 Domain of unknown function DUF1794 AMED_9015 7a19409fa568a697fd0adda290806b2a 204 SUPERFAMILY SSF50814 44 202 5.87E-44 T 19-04-2016 IPR011038 Calycin-like AMED_5717 5cb1a2c2628f66b09a94165dd2c62085 363 Gene3D G3DSA:2.102.10.10 158 361 5.3E-34 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_5717 5cb1a2c2628f66b09a94165dd2c62085 363 Pfam PF00355 Rieske [2Fe-2S] domain 280 336 4.1E-11 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_5717 5cb1a2c2628f66b09a94165dd2c62085 363 PANTHER PTHR10134 281 353 1.1E-17 T 19-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 AMED_5717 5cb1a2c2628f66b09a94165dd2c62085 363 SUPERFAMILY SSF50022 280 361 7.07E-25 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 PANTHER PTHR30055:SF89 1 176 3.4E-42 T 19-04-2016 AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 SUPERFAMILY SSF48498 71 178 4.85E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 PANTHER PTHR30055 1 176 3.4E-42 T 19-04-2016 AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 Gene3D G3DSA:1.10.357.10 65 178 2.2E-14 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 Gene3D G3DSA:1.10.10.60 2 58 1.3E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 48 5.5E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7566 0b927bc6b6d091df9f942641874cc20f 198 SUPERFAMILY SSF46689 3 70 9.75E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 Gene3D G3DSA:1.10.357.10 13 207 2.5E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 2.1E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 PANTHER PTHR30055 3 209 7.4E-19 T 19-04-2016 AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 SUPERFAMILY SSF48498 87 204 8.16E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 SUPERFAMILY SSF46689 12 82 6.79E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0962 f3decbd613450bd8cec9655293ec4aed 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5670 3cc79848865f994b828b0ca501697925 205 PANTHER PTHR30055:SF10 8 203 2.0E-26 T 19-04-2016 AMED_5670 3cc79848865f994b828b0ca501697925 205 Gene3D G3DSA:1.10.10.60 11 63 1.1E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5670 3cc79848865f994b828b0ca501697925 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 66 4.3E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5670 3cc79848865f994b828b0ca501697925 205 SUPERFAMILY SSF46689 15 83 6.98E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5670 3cc79848865f994b828b0ca501697925 205 PANTHER PTHR30055 8 203 2.0E-26 T 19-04-2016 AMED_5670 3cc79848865f994b828b0ca501697925 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 68 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_5670 3cc79848865f994b828b0ca501697925 205 Gene3D G3DSA:1.10.357.10 64 201 2.0E-19 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1902 a12e922e5f9f429e8059c14ecd9976f1 95 PANTHER PTHR10029 2 92 4.4E-22 T 19-04-2016 AMED_1902 a12e922e5f9f429e8059c14ecd9976f1 95 Gene3D G3DSA:3.30.70.100 9 92 2.2E-27 T 19-04-2016 AMED_1902 a12e922e5f9f429e8059c14ecd9976f1 95 Pfam PF00708 Acylphosphatase 8 92 5.5E-22 T 19-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMED_1902 a12e922e5f9f429e8059c14ecd9976f1 95 ProSitePatterns PS00150 Acylphosphatase signature 1. 14 24 - T 19-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMED_1902 a12e922e5f9f429e8059c14ecd9976f1 95 SUPERFAMILY SSF54975 7 93 2.4E-24 T 19-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 SUPERFAMILY SSF48498 87 212 6.55E-34 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 SUPERFAMILY SSF46689 10 93 2.51E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 6.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 6.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 PANTHER PTHR30328:SF16 10 211 3.6E-84 T 19-04-2016 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 Gene3D G3DSA:1.10.357.10 7 212 1.6E-48 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 3.8E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4359 b26eb3392cd04e7a1acebdcf0299b78f 213 PANTHER PTHR30328 10 211 3.6E-84 T 19-04-2016 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 233 2.1E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 SMART SM00421 176 233 7.0E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 SUPERFAMILY SSF52172 19 149 2.41E-13 T 19-04-2016 IPR011006 CheY-like superfamily AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 Pfam PF00072 Response regulator receiver domain 23 135 1.1E-7 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 193 1.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 209 1.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 209 221 1.3E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 ProSitePatterns PS00622 LuxR-type HTH domain signature. 193 220 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 Gene3D G3DSA:3.40.50.2300 21 139 1.2E-13 T 19-04-2016 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 Gene3D G3DSA:1.10.10.10 140 239 6.6E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 PANTHER PTHR26402:SF151 21 245 1.4E-39 T 19-04-2016 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 PANTHER PTHR26402 21 245 1.4E-39 T 19-04-2016 AMED_9195 7af8d4cf6f8b4a36592d74b83bc6326e 261 SUPERFAMILY SSF46894 170 238 1.97E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1782 079c604d0508fd22b958257e3558d4ff 324 Gene3D G3DSA:3.20.20.30 2 321 4.2E-97 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1782 079c604d0508fd22b958257e3558d4ff 324 PANTHER PTHR30137:SF2 1 320 1.3E-133 T 19-04-2016 AMED_1782 079c604d0508fd22b958257e3558d4ff 324 Pfam PF00296 Luciferase-like monooxygenase 16 299 3.0E-39 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1782 079c604d0508fd22b958257e3558d4ff 324 PANTHER PTHR30137 1 320 1.3E-133 T 19-04-2016 AMED_1782 079c604d0508fd22b958257e3558d4ff 324 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 3 321 2.0E-132 T 19-04-2016 IPR019949 Luciferase family oxidoreductase, group 1 AMED_1782 079c604d0508fd22b958257e3558d4ff 324 SUPERFAMILY SSF51679 2 321 1.44E-82 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4033 5cd8b63f96e416312d57cd243354ea95 325 Gene3D G3DSA:3.40.50.1100 131 300 2.4E-39 T 19-04-2016 AMED_4033 5cd8b63f96e416312d57cd243354ea95 325 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 279 9.8E-43 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4033 5cd8b63f96e416312d57cd243354ea95 325 PANTHER PTHR10314:SF8 17 301 2.9E-60 T 19-04-2016 AMED_4033 5cd8b63f96e416312d57cd243354ea95 325 SUPERFAMILY SSF53686 21 301 8.12E-64 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4033 5cd8b63f96e416312d57cd243354ea95 325 PANTHER PTHR10314 17 301 2.9E-60 T 19-04-2016 AMED_4033 5cd8b63f96e416312d57cd243354ea95 325 Gene3D G3DSA:3.40.50.1100 36 130 1.4E-21 T 19-04-2016 AMED_8146 de0d43a46fa1193ff05c74d4ffff161e 167 SUPERFAMILY SSF52833 14 154 1.45E-11 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_8146 de0d43a46fa1193ff05c74d4ffff161e 167 Gene3D G3DSA:3.40.30.10 9 156 2.0E-11 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 SUPERFAMILY SSF52540 2 219 4.42E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 SMART SM00382 26 204 8.6E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 Pfam PF00005 ABC transporter 17 156 4.0E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 Gene3D G3DSA:3.40.50.300 1 223 5.4E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 PANTHER PTHR24220 3 223 1.2E-112 T 19-04-2016 AMED_9263 fe1193f74e3d47ad265f2397348cee5f 312 PANTHER PTHR24220:SF523 3 223 1.2E-112 T 19-04-2016 AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 PANTHER PTHR11066 22 297 5.4E-110 T 19-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 Pfam PF13622 Thioesterase-like superfamily 46 294 2.8E-59 T 19-04-2016 AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 Gene3D G3DSA:3.10.129.10 142 297 3.4E-52 T 19-04-2016 IPR029069 HotDog domain AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 PANTHER PTHR11066:SF34 22 297 5.4E-110 T 19-04-2016 AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 SUPERFAMILY SSF54637 133 296 9.84E-48 T 19-04-2016 IPR029069 HotDog domain AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 SUPERFAMILY SSF54637 21 131 1.17E-41 T 19-04-2016 IPR029069 HotDog domain AMED_2470 34a6b9f2665773f2e328385a82225ba3 298 Gene3D G3DSA:3.10.129.10 22 132 5.7E-50 T 19-04-2016 IPR029069 HotDog domain AMED_3148 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 Gene3D G3DSA:3.50.30.40 41 195 1.4E-40 T 19-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMED_3148 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 PANTHER PTHR33254:SF2 2 244 2.1E-58 T 19-04-2016 AMED_3148 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 PANTHER PTHR33254 2 244 2.1E-58 T 19-04-2016 AMED_3148 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 SUPERFAMILY SSF89562 21 198 1.7E-36 T 19-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMED_3148 7cd0ac539b19af1d9e1ea5a0e1d3bf1e 246 Pfam PF03737 Demethylmenaquinone methyltransferase 30 189 4.9E-33 T 19-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMED_3806 9192e38918f1e730de94693c281314d0 638 SUPERFAMILY SSF46894 3 95 2.83E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3806 9192e38918f1e730de94693c281314d0 638 PANTHER PTHR35807 1 257 4.0E-58 T 19-04-2016 AMED_3806 9192e38918f1e730de94693c281314d0 638 PANTHER PTHR35807 277 345 4.0E-58 T 19-04-2016 AMED_3806 9192e38918f1e730de94693c281314d0 638 Gene3D G3DSA:1.10.10.10 11 97 2.2E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3806 9192e38918f1e730de94693c281314d0 638 SUPERFAMILY SSF48452 110 262 7.97E-30 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3806 9192e38918f1e730de94693c281314d0 638 SMART SM00862 16 95 5.5E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3806 9192e38918f1e730de94693c281314d0 638 SMART SM01043 102 241 1.0E-44 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3806 9192e38918f1e730de94693c281314d0 638 Pfam PF03704 Bacterial transcriptional activator domain 102 241 1.2E-35 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_3806 9192e38918f1e730de94693c281314d0 638 Pfam PF00486 Transcriptional regulatory protein, C terminal 18 95 9.9E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5444 7a0b6490737d612662c199bef526dd0e 288 SUPERFAMILY SSF51679 1 273 1.91E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5444 7a0b6490737d612662c199bef526dd0e 288 PANTHER PTHR30011 1 216 2.0E-50 T 19-04-2016 AMED_5444 7a0b6490737d612662c199bef526dd0e 288 Pfam PF00296 Luciferase-like monooxygenase 15 232 4.9E-44 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5444 7a0b6490737d612662c199bef526dd0e 288 Gene3D G3DSA:3.20.20.30 1 276 4.2E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5444 7a0b6490737d612662c199bef526dd0e 288 PANTHER PTHR30011:SF5 1 216 2.0E-50 T 19-04-2016 AMED_7272 3db2a1b5756ad090c466b251661d889b 300 SUPERFAMILY SSF51556 24 296 1.58E-56 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7272 3db2a1b5756ad090c466b251661d889b 300 PANTHER PTHR35563:SF1 7 298 4.5E-47 T 19-04-2016 AMED_7272 3db2a1b5756ad090c466b251661d889b 300 Pfam PF04909 Amidohydrolase 29 296 3.0E-24 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_7272 3db2a1b5756ad090c466b251661d889b 300 PANTHER PTHR35563 7 298 4.5E-47 T 19-04-2016 AMED_7272 3db2a1b5756ad090c466b251661d889b 300 Gene3D G3DSA:3.20.20.140 17 297 1.1E-72 T 19-04-2016 AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Gene3D G3DSA:3.40.50.140 112 170 3.5E-6 T 19-04-2016 IPR006171 Toprim domain AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Pfam PF13662 Toprim domain 80 171 2.8E-25 T 19-04-2016 IPR006171 Toprim domain AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 PANTHER PTHR30446 1 198 8.6E-105 T 19-04-2016 AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 PANTHER PTHR30446:SF0 1 198 8.6E-105 T 19-04-2016 AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 196 1.8E-82 T 19-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Pfam PF00633 Helix-hairpin-helix motif 2 27 3.4E-6 T 19-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 SUPERFAMILY SSF111304 3 198 5.1E-70 T 19-04-2016 IPR023627 Recombination protein RecR AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 SMART SM00493 79 164 1.3E-17 T 19-04-2016 IPR006171 Toprim domain AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Pfam PF02132 RecR protein 39 77 6.0E-14 T 19-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 19-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AMED_8911 4093d75fbc23845f0f7fb7dbf9ebf2c1 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 99.921 T 19-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMED_7509 a9d05b01eb4d2c1fb690f3642a4c813c 100 PANTHER PTHR10245 16 100 1.3E-14 T 19-04-2016 AMED_7509 a9d05b01eb4d2c1fb690f3642a4c813c 100 SUPERFAMILY SSF51182 25 93 5.2E-17 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_7509 a9d05b01eb4d2c1fb690f3642a4c813c 100 PANTHER PTHR10245:SF51 16 100 1.3E-14 T 19-04-2016 AMED_7509 a9d05b01eb4d2c1fb690f3642a4c813c 100 Gene3D G3DSA:2.60.120.10 9 92 2.1E-16 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_7509 a9d05b01eb4d2c1fb690f3642a4c813c 100 Pfam PF07883 Cupin domain 27 81 3.4E-14 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_3120 307015cf3a54f91f9b46bdda824d6690 154 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 11 127 9.8E-17 T 19-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain AMED_3120 307015cf3a54f91f9b46bdda824d6690 154 SUPERFAMILY SSF55961 1 139 2.5E-25 T 19-04-2016 AMED_3120 307015cf3a54f91f9b46bdda824d6690 154 PANTHER PTHR33824:SF2 1 148 3.4E-37 T 19-04-2016 AMED_3120 307015cf3a54f91f9b46bdda824d6690 154 PANTHER PTHR33824 1 148 3.4E-37 T 19-04-2016 AMED_3120 307015cf3a54f91f9b46bdda824d6690 154 Gene3D G3DSA:3.30.530.20 4 132 2.4E-8 T 19-04-2016 IPR023393 START-like domain AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 PANTHER PTHR10681 18 144 4.8E-39 T 19-04-2016 AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 PANTHER PTHR10681 163 206 4.8E-39 T 19-04-2016 AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 Pfam PF00578 AhpC/TSA family 41 183 7.1E-20 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 Gene3D G3DSA:3.40.30.10 38 206 3.8E-23 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 PANTHER PTHR10681:SF70 18 144 4.8E-39 T 19-04-2016 AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 PANTHER PTHR10681:SF70 163 206 4.8E-39 T 19-04-2016 AMED_8890 2ad044797bcb48d72b80a28ccc0f35b4 206 SUPERFAMILY SSF52833 40 206 1.27E-23 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 3.0E-235 T 19-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 545 1.3E-49 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 168 3.1E-55 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 Gene3D G3DSA:3.40.50.1220 188 352 1.1E-70 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 PANTHER PTHR18968:SF116 2 584 0.0 T 19-04-2016 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 Gene3D G3DSA:3.40.50.970 2 178 1.7E-71 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 PANTHER PTHR18968 2 584 0.0 T 19-04-2016 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 SUPERFAMILY SSF52518 369 574 1.04E-67 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 3.8E-50 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 SUPERFAMILY SSF52518 2 182 6.31E-60 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 Gene3D G3DSA:3.40.50.970 353 560 5.8E-75 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 429 448 - T 19-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMED_1685 79b0b511f67387bd43fde02c5e8f3116 598 SUPERFAMILY SSF52467 186 359 8.78E-64 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 PIRSF PIRSF016578 1 377 1.2E-83 T 19-04-2016 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 227 358 8.3E-27 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 90 7.8E-8 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 Gene3D G3DSA:1.20.140.10 198 377 2.7E-35 T 19-04-2016 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 SUPERFAMILY SSF56645 11 201 9.29E-27 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 Gene3D G3DSA:1.10.540.10 5 102 5.5E-27 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 SUPERFAMILY SSF47203 212 359 6.09E-14 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 PANTHER PTHR10909 1 373 1.7E-49 T 19-04-2016 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 PANTHER PTHR10909:SF279 1 373 1.7E-49 T 19-04-2016 AMED_1899 e98e06f32f5d6eb0dc81a5162dec47ca 379 Gene3D G3DSA:2.40.110.10 113 197 1.1E-15 T 19-04-2016 AMED_0026 1d12262cad162b4fcfdec16972784562 247 PANTHER PTHR30294:SF24 4 247 1.0E-75 T 19-04-2016 AMED_0026 1d12262cad162b4fcfdec16972784562 247 Pfam PF01061 ABC-2 type transporter 7 212 2.0E-26 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_0026 1d12262cad162b4fcfdec16972784562 247 PIRSF PIRSF006648 1 247 1.1E-63 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_0026 1d12262cad162b4fcfdec16972784562 247 PANTHER PTHR30294 4 247 1.0E-75 T 19-04-2016 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 Pfam PF00005 ABC transporter 25 167 1.2E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 Pfam PF13732 Domain of unknown function (DUF4162) 222 310 3.1E-11 T 19-04-2016 IPR025302 Domain of unknown function DUF4162 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 Gene3D G3DSA:3.40.50.300 1 232 6.0E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 SMART SM00382 33 217 6.3E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 PANTHER PTHR24220 280 319 5.1E-91 T 19-04-2016 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 PANTHER PTHR24220 3 246 5.1E-91 T 19-04-2016 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 SUPERFAMILY SSF52540 17 232 1.64E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 PANTHER PTHR24220:SF429 280 319 5.1E-91 T 19-04-2016 AMED_8253 c908b417112d6c57881e3e47ffab80a5 325 PANTHER PTHR24220:SF429 3 246 5.1E-91 T 19-04-2016 AMED_3190 b82c701c82e206dc2ffdb7c790d2576d 669 PANTHER PTHR35339:SF1 1 421 8.0E-94 T 19-04-2016 AMED_3190 b82c701c82e206dc2ffdb7c790d2576d 669 PANTHER PTHR35339 1 421 8.0E-94 T 19-04-2016 AMED_3190 b82c701c82e206dc2ffdb7c790d2576d 669 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 17 363 8.3E-100 T 19-04-2016 IPR016624 Uncharacterised conserved protein UCP014753 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PANTHER PTHR11712:SF233 2 386 3.0E-105 T 19-04-2016 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 Pfam PF00067 Cytochrome P450 73 357 6.7E-23 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 SUPERFAMILY SSF48264 6 388 1.7E-84 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 Gene3D G3DSA:1.10.630.10 2 388 6.4E-109 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PANTHER PTHR11712 2 386 3.0E-105 T 19-04-2016 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 79 90 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 331 340 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 282 309 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 310 325 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 265 276 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 340 351 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 146 161 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 129 145 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 PRINTS PR00359 B-class P450 signature 189 211 1.5E-49 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0142 fc83c6b775a076d2840a55115fe52f0f 388 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 333 342 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 1.4E-16 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 1.4E-16 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 1.4E-16 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 1.4E-16 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 SMART SM00388 251 318 8.4E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 466 7.1E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 SUPERFAMILY SSF47384 235 319 2.75E-15 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 Pfam PF00672 HAMP domain 173 240 3.2E-14 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 SUPERFAMILY SSF55874 308 465 3.14E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 PANTHER PTHR24423 185 465 1.2E-65 T 19-04-2016 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 PANTHER PTHR24423 5 16 1.2E-65 T 19-04-2016 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 318 1.1E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 Gene3D G3DSA:1.10.287.130 245 305 2.1E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 SUPERFAMILY SSF158472 191 241 1.7E-8 T 19-04-2016 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 SMART SM00387 360 468 1.8E-32 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 SMART SM00304 191 243 1.4E-14 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_3013 1d3e05a4ee0b09838a63b8e859cf2953 469 Gene3D G3DSA:3.30.565.10 306 465 2.8E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7529 ca7acb1d10690da58400eff33f9cee44 355 Pfam PF11271 Protein of unknown function (DUF3068) 5 329 3.7E-83 T 19-04-2016 IPR021424 Protein of unknown function DUF3068 AMED_3750 1d9865141cdceeedde53759540d13170 723 PANTHER PTHR22762 311 542 2.1E-58 T 19-04-2016 AMED_3750 1d9865141cdceeedde53759540d13170 723 PANTHER PTHR22762:SF81 311 542 2.1E-58 T 19-04-2016 AMED_3750 1d9865141cdceeedde53759540d13170 723 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 37 264 4.5E-44 T 19-04-2016 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 Pfam PF02065 Melibiase 273 610 8.3E-112 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 Gene3D G3DSA:3.20.20.70 304 595 2.2E-43 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 310 324 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 388 410 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 521 537 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 446 461 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 225 240 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 338 353 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 PRINTS PR00743 Glycosyl hydrolase family 36 signature 496 512 1.3E-38 T 19-04-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_3750 1d9865141cdceeedde53759540d13170 723 SUPERFAMILY SSF51445 307 639 5.76E-99 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3750 1d9865141cdceeedde53759540d13170 723 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 628 710 2.2E-8 T 19-04-2016 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 AMED_4494 4904ef154ab9863e64dafd03872e536c 296 Pfam PF00561 alpha/beta hydrolase fold 26 141 2.4E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4494 4904ef154ab9863e64dafd03872e536c 296 PANTHER PTHR10992:SF818 10 70 1.2E-47 T 19-04-2016 AMED_4494 4904ef154ab9863e64dafd03872e536c 296 PANTHER PTHR10992:SF818 86 290 1.2E-47 T 19-04-2016 AMED_4494 4904ef154ab9863e64dafd03872e536c 296 PANTHER PTHR10992 10 70 1.2E-47 T 19-04-2016 AMED_4494 4904ef154ab9863e64dafd03872e536c 296 PANTHER PTHR10992 86 290 1.2E-47 T 19-04-2016 AMED_4494 4904ef154ab9863e64dafd03872e536c 296 Gene3D G3DSA:3.40.50.1820 4 287 6.5E-69 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4494 4904ef154ab9863e64dafd03872e536c 296 SUPERFAMILY SSF53474 8 286 1.77E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2956 64168f96c3940157b35683b956efaed7 234 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 14 232 4.0E-55 T 19-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase AMED_2956 64168f96c3940157b35683b956efaed7 234 SUPERFAMILY SSF64438 3 232 6.41E-73 T 19-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMED_2956 64168f96c3940157b35683b956efaed7 234 Gene3D G3DSA:3.60.140.10 2 233 8.0E-82 T 19-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase AMED_2956 64168f96c3940157b35683b956efaed7 234 PANTHER PTHR30616 2 234 7.3E-78 T 19-04-2016 AMED_2956 64168f96c3940157b35683b956efaed7 234 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 8 231 2.8E-71 T 19-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 Pfam PF01614 Bacterial transcriptional regulator 128 246 2.0E-26 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 PANTHER PTHR30136:SF16 9 261 2.2E-94 T 19-04-2016 AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 SUPERFAMILY SSF55781 66 249 2.49E-44 T 19-04-2016 IPR029016 GAF domain-like AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 PANTHER PTHR30136 9 261 2.2E-94 T 19-04-2016 AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 Gene3D G3DSA:3.30.450.40 82 249 5.8E-49 T 19-04-2016 IPR029016 GAF domain-like AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 SMART SM00346 9 98 3.6E-24 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 Gene3D G3DSA:1.10.10.10 10 70 8.1E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 SUPERFAMILY SSF46785 11 79 1.69E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0390 b45107a5d3102a71abe47d67adaa456f 263 Pfam PF09339 IclR helix-turn-helix domain 12 61 1.2E-14 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 SUPERFAMILY SSF46689 3 62 4.0E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PANTHER PTHR30055 3 99 1.4E-18 T 19-04-2016 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 SUPERFAMILY SSF48498 69 192 2.11E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 94 117 1.6E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 128 147 1.6E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 20 43 1.6E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00400 Tetracycline repressor protein signature 74 93 1.6E-12 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PANTHER PTHR30055:SF36 3 99 1.4E-18 T 19-04-2016 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 Gene3D G3DSA:1.10.357.10 63 192 9.4E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 5.9E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 5.9E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 Gene3D G3DSA:1.10.10.60 2 61 1.2E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 54 4.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1248 44ddef27120ced4b5c284caef4df9591 194 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 74 187 6.2E-14 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_5936 6a07c396f0bd3973b167d7e276693732 183 SUPERFAMILY SSF54909 1 88 1.64E-13 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5936 6a07c396f0bd3973b167d7e276693732 183 PANTHER PTHR33606:SF3 1 143 8.6E-31 T 19-04-2016 AMED_5936 6a07c396f0bd3973b167d7e276693732 183 Pfam PF03795 YCII-related domain 1 87 7.5E-14 T 19-04-2016 IPR005545 YCII-related AMED_5936 6a07c396f0bd3973b167d7e276693732 183 PANTHER PTHR33606 1 143 8.6E-31 T 19-04-2016 AMED_5936 6a07c396f0bd3973b167d7e276693732 183 Gene3D G3DSA:3.30.70.1060 1 89 3.0E-17 T 19-04-2016 AMED_0521 e380317f3f8311af805221f22f29d753 182 Gene3D G3DSA:3.40.50.700 21 151 9.3E-35 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMED_0521 e380317f3f8311af805221f22f29d753 182 PANTHER PTHR11995:SF2 4 156 1.8E-87 T 19-04-2016 AMED_0521 e380317f3f8311af805221f22f29d753 182 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 152 4.3E-70 T 19-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 AMED_0521 e380317f3f8311af805221f22f29d753 182 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 43.412 T 19-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 AMED_0521 e380317f3f8311af805221f22f29d753 182 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 19-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 AMED_0521 e380317f3f8311af805221f22f29d753 182 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 146 3.5E-24 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMED_0521 e380317f3f8311af805221f22f29d753 182 PANTHER PTHR11995 4 156 1.8E-87 T 19-04-2016 AMED_0521 e380317f3f8311af805221f22f29d753 182 SUPERFAMILY SSF56770 9 155 5.49E-67 T 19-04-2016 AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 PANTHER PTHR22642:SF2 6 528 2.0E-114 T 19-04-2016 AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 Pfam PF07969 Amidohydrolase family 49 526 9.0E-85 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 PANTHER PTHR22642 6 528 2.0E-114 T 19-04-2016 AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 Gene3D G3DSA:2.30.40.10 5 101 2.0E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 SUPERFAMILY SSF51556 60 114 5.53E-32 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 SUPERFAMILY SSF51556 180 459 5.53E-32 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 SUPERFAMILY SSF51338 6 78 8.31E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_4734 7d2b5b55d795be249c36cbf256fbeeb3 531 Gene3D G3DSA:3.20.20.140 186 459 5.2E-31 T 19-04-2016 AMED_0109 989d756e9f4dfc44a5db25c6bbd06c09 294 SUPERFAMILY SSF54593 189 292 4.3E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0109 989d756e9f4dfc44a5db25c6bbd06c09 294 PANTHER PTHR34109 29 183 1.0E-22 T 19-04-2016 AMED_0109 989d756e9f4dfc44a5db25c6bbd06c09 294 SUPERFAMILY SSF54593 54 171 2.55E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0109 989d756e9f4dfc44a5db25c6bbd06c09 294 Gene3D G3DSA:3.10.180.10 51 171 2.0E-24 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0109 989d756e9f4dfc44a5db25c6bbd06c09 294 Gene3D G3DSA:3.10.180.10 189 291 1.2E-15 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0109 989d756e9f4dfc44a5db25c6bbd06c09 294 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 58 167 1.8E-7 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_3061 a36e2fe75a8ba35c82cf64e335f5eab7 288 PANTHER PTHR30565:SF2 2 214 6.4E-107 T 19-04-2016 AMED_3061 a36e2fe75a8ba35c82cf64e335f5eab7 288 Gene3D G3DSA:1.20.1260.10 2 195 1.7E-77 T 19-04-2016 IPR012347 Ferritin-related AMED_3061 a36e2fe75a8ba35c82cf64e335f5eab7 288 SUPERFAMILY SSF47240 2 270 1.62E-85 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_3061 a36e2fe75a8ba35c82cf64e335f5eab7 288 Gene3D G3DSA:3.30.1530.10 209 266 5.9E-7 T 19-04-2016 IPR027407 Manganese catalase, domain 2 AMED_3061 a36e2fe75a8ba35c82cf64e335f5eab7 288 PANTHER PTHR30565 2 214 6.4E-107 T 19-04-2016 AMED_3061 a36e2fe75a8ba35c82cf64e335f5eab7 288 Pfam PF05067 Manganese containing catalase 2 271 3.4E-91 T 19-04-2016 IPR007760 Manganese catalase AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 PANTHER PTHR10996 3 312 2.9E-120 T 19-04-2016 AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 221 237 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 Gene3D G3DSA:3.40.50.720 115 284 3.7E-64 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 192 214 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 SUPERFAMILY SSF51735 101 282 1.41E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 281 2.1E-58 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 SUPERFAMILY SSF52283 3 132 2.65E-32 T 19-04-2016 AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 Gene3D G3DSA:3.40.50.720 3 114 3.1E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1850 d24c479567fb7e298248201e23e8bbb4 314 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 312 1.5E-30 T 19-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 131 7.7E-15 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 Gene3D G3DSA:1.10.540.10 2 132 2.0E-24 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 PANTHER PTHR10909:SF195 2 420 1.7E-146 T 19-04-2016 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 SUPERFAMILY SSF47203 246 403 8.05E-40 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 PANTHER PTHR10909 2 420 1.7E-146 T 19-04-2016 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 398 3.9E-34 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 212 5.2E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 Gene3D G3DSA:2.40.110.10 135 237 2.0E-31 T 19-04-2016 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 Gene3D G3DSA:1.20.140.10 238 403 3.7E-40 T 19-04-2016 AMED_7171 1c2195c3cb89439ad5e5580f500e558b 439 SUPERFAMILY SSF56645 2 260 8.25E-62 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2591 314e9e8a39bd11c63be212f59974e311 651 Pfam PF02446 4-alpha-glucanotransferase 142 625 1.6E-113 T 19-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMED_2591 314e9e8a39bd11c63be212f59974e311 651 Gene3D G3DSA:3.20.20.80 136 631 1.3E-147 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2591 314e9e8a39bd11c63be212f59974e311 651 PANTHER PTHR32438 137 651 1.1E-135 T 19-04-2016 AMED_2591 314e9e8a39bd11c63be212f59974e311 651 SUPERFAMILY SSF51445 137 636 1.62E-133 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2591 314e9e8a39bd11c63be212f59974e311 651 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 107 637 1.6E-86 T 19-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMED_2591 314e9e8a39bd11c63be212f59974e311 651 PANTHER PTHR32438:SF5 137 651 1.1E-135 T 19-04-2016 AMED_5322 3dcc50ba475ed8f43e69a42c88e6f3f3 381 SUPERFAMILY SSF53756 3 365 2.27E-74 T 19-04-2016 AMED_5322 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Gene3D G3DSA:3.40.50.2000 185 341 2.8E-23 T 19-04-2016 AMED_5322 3dcc50ba475ed8f43e69a42c88e6f3f3 381 PANTHER PTHR12526:SF368 1 363 1.2E-151 T 19-04-2016 AMED_5322 3dcc50ba475ed8f43e69a42c88e6f3f3 381 PANTHER PTHR12526 1 363 1.2E-151 T 19-04-2016 AMED_5322 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Pfam PF13439 Glycosyltransferase Family 4 14 173 2.9E-26 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_5322 3dcc50ba475ed8f43e69a42c88e6f3f3 381 Pfam PF13692 Glycosyl transferases group 1 190 330 1.1E-27 T 19-04-2016 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 PANTHER PTHR11986 20 434 3.4E-82 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 PANTHER PTHR11986:SF85 20 434 3.4E-82 T 19-04-2016 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 Gene3D G3DSA:3.90.1150.10 333 433 1.8E-18 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 Gene3D G3DSA:3.90.1150.10 17 56 1.8E-18 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 SUPERFAMILY SSF53383 17 433 2.56E-88 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 243 281 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 Pfam PF00202 Aminotransferase class-III 19 427 5.8E-69 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0641 b6573fe7bcb3a46b6b59a2030fccf74b 434 Gene3D G3DSA:3.40.640.10 57 330 6.4E-59 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7668 ab65d29a962526882258c72641c9eaaa 137 Pfam PF09350 Domain of unknown function (DUF1992) 14 83 4.1E-15 T 19-04-2016 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 223 312 1.2E-13 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 Gene3D G3DSA:3.30.43.10 1 49 3.3E-14 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 SUPERFAMILY SSF56176 1 214 1.8E-54 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 SUPERFAMILY SSF55447 221 318 3.79E-24 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 SMART SM01092 221 319 3.4E-23 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 Gene3D G3DSA:3.30.465.10 54 108 1.3E-30 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 Gene3D G3DSA:3.30.465.10 152 213 1.3E-30 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 214 1.2E-43 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 PANTHER PTHR11908 157 317 1.0E-94 T 19-04-2016 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 PANTHER PTHR11908 1 114 1.0E-94 T 19-04-2016 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 Gene3D G3DSA:3.30.390.50 220 317 6.0E-31 T 19-04-2016 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 PANTHER PTHR11908:SF97 157 317 1.0E-94 T 19-04-2016 AMED_5757 400a74a5e3e772d1a158fe815c3180fe 323 PANTHER PTHR11908:SF97 1 114 1.0E-94 T 19-04-2016 AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 1.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 1.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 1.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PANTHER PTHR24322 144 176 1.6E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PANTHER PTHR24322 12 128 1.6E-46 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 1.5E-49 T 19-04-2016 AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 Gene3D G3DSA:3.40.50.720 1 248 3.6E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 SUPERFAMILY SSF51735 1 248 5.88E-74 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 8 248 2.2E-96 T 19-04-2016 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 1.1E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 1.1E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5954 cefd777da9a1d81836439b7cebaed85f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 1.1E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0447 758245546fd4530a1d6adf719b47368d 233 Pfam PF09335 SNARE associated Golgi protein 38 161 7.6E-15 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_0447 758245546fd4530a1d6adf719b47368d 233 PANTHER PTHR30353 19 211 1.2E-16 T 19-04-2016 IPR032818 DedA family AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 SUPERFAMILY SSF46689 11 81 3.04E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 PANTHER PTHR30055 1 127 2.1E-15 T 19-04-2016 AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 5.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 5.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 Gene3D G3DSA:1.10.357.10 13 179 2.0E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 PANTHER PTHR30055:SF91 1 127 2.1E-15 T 19-04-2016 AMED_0409 38da39e2c78d34503c13ed7bf35e03d5 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 9.8E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2742 d8845d565020ebf4d33a4e5de651fe08 151 PANTHER PTHR11078 16 140 7.5E-43 T 19-04-2016 IPR011605 NusB antitermination factor GO:0006353 AMED_2742 d8845d565020ebf4d33a4e5de651fe08 151 Pfam PF01029 NusB family 17 140 3.4E-33 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMED_2742 d8845d565020ebf4d33a4e5de651fe08 151 SUPERFAMILY SSF48013 15 140 3.79E-37 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMED_2742 d8845d565020ebf4d33a4e5de651fe08 151 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 14 145 21.493 T 19-04-2016 IPR011605 NusB antitermination factor GO:0006353 AMED_2742 d8845d565020ebf4d33a4e5de651fe08 151 Gene3D G3DSA:1.10.940.10 14 140 1.5E-41 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMED_2742 d8845d565020ebf4d33a4e5de651fe08 151 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 15 140 1.9E-38 T 19-04-2016 IPR011605 NusB antitermination factor GO:0006353 AMED_1164 469072410a24a2afab2ec10500c07788 234 Pfam PF07729 FCD domain 96 215 2.0E-22 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1164 469072410a24a2afab2ec10500c07788 234 PANTHER PTHR11751 91 109 2.8E-15 T 19-04-2016 AMED_1164 469072410a24a2afab2ec10500c07788 234 PANTHER PTHR11751 4 71 2.8E-15 T 19-04-2016 AMED_1164 469072410a24a2afab2ec10500c07788 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 64 6.2E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1164 469072410a24a2afab2ec10500c07788 234 SMART SM00345 6 64 4.0E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1164 469072410a24a2afab2ec10500c07788 234 SUPERFAMILY SSF46785 3 68 1.9E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1164 469072410a24a2afab2ec10500c07788 234 Gene3D G3DSA:1.10.10.10 3 74 5.4E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1164 469072410a24a2afab2ec10500c07788 234 SMART SM00895 93 217 3.4E-17 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1164 469072410a24a2afab2ec10500c07788 234 SUPERFAMILY SSF48008 93 222 4.45E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1164 469072410a24a2afab2ec10500c07788 234 Gene3D G3DSA:1.20.120.530 80 218 1.6E-25 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 Gene3D G3DSA:2.30.42.10 388 462 1.3E-15 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 SMART SM00228 386 457 4.4E-10 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 265 289 1.2E-49 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 328 345 1.2E-49 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 224 244 1.2E-49 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 200 212 1.2E-49 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 306 323 1.2E-49 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PRINTS PR00834 HtrA/DegQ protease family signature 415 427 1.2E-49 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PANTHER PTHR22939 27 463 3.9E-117 T 19-04-2016 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 Pfam PF13365 Trypsin-like peptidase domain 191 335 1.9E-32 T 19-04-2016 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 SUPERFAMILY SSF50494 166 381 4.51E-56 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 Gene3D G3DSA:2.40.10.10 266 387 9.7E-42 T 19-04-2016 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 Gene3D G3DSA:2.40.10.10 185 265 2.7E-29 T 19-04-2016 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 PANTHER PTHR22939:SF79 27 463 3.9E-117 T 19-04-2016 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 SUPERFAMILY SSF50156 357 456 4.99E-16 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_8329 6d0fd03cf7aeec07b367e2b20799fde5 471 Pfam PF13180 PDZ domain 387 455 1.3E-12 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMED_6881 76e034e88a5d060c491a53462482b802 166 Pfam PF05988 Bacterial protein of unknown function (DUF899) 12 140 1.5E-19 T 19-04-2016 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMED_3075 d38f63c8ee71335ad055308d82bed7b5 230 PANTHER PTHR34002:SF5 1 228 1.3E-49 T 19-04-2016 AMED_3075 d38f63c8ee71335ad055308d82bed7b5 230 Pfam PF01670 Glycosyl hydrolase family 12 77 227 2.0E-20 T 19-04-2016 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 AMED_3075 d38f63c8ee71335ad055308d82bed7b5 230 PANTHER PTHR34002 1 228 1.3E-49 T 19-04-2016 AMED_3075 d38f63c8ee71335ad055308d82bed7b5 230 Gene3D G3DSA:2.60.120.180 30 228 1.7E-54 T 19-04-2016 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3075 d38f63c8ee71335ad055308d82bed7b5 230 SUPERFAMILY SSF49899 30 228 4.98E-46 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 306 447 1.8E-51 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 SUPERFAMILY SSF110221 293 452 8.63E-46 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 SUPERFAMILY SSF49899 1 294 1.12E-85 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 Gene3D G3DSA:2.60.120.200 1 293 2.8E-115 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 PANTHER PTHR39447:SF2 1 453 3.0E-141 T 19-04-2016 AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 PANTHER PTHR39447 1 453 3.0E-141 T 19-04-2016 AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 Gene3D G3DSA:2.80.10.50 297 452 9.8E-43 T 19-04-2016 AMED_3530 ae6509dc095b8237e93d90a177d9bc69 453 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 1 292 2.4E-115 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_7110 c928b440657e541af5adaf4367f1bce8 180 Pfam PF13518 Helix-turn-helix domain 31 69 6.3E-6 T 19-04-2016 AMED_7110 c928b440657e541af5adaf4367f1bce8 180 Gene3D G3DSA:1.10.10.60 30 80 5.6E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7110 c928b440657e541af5adaf4367f1bce8 180 SUPERFAMILY SSF46689 29 126 1.38E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7110 c928b440657e541af5adaf4367f1bce8 180 SMART SM00530 106 163 0.005 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7110 c928b440657e541af5adaf4367f1bce8 180 Pfam PF13560 Helix-turn-helix domain 102 163 5.2E-7 T 19-04-2016 AMED_7110 c928b440657e541af5adaf4367f1bce8 180 Gene3D G3DSA:1.10.260.40 99 165 2.5E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5751 48c54d75ba4aaaf723fbc743d7dd50ea 408 PANTHER PTHR32507:SF12 4 371 1.6E-51 T 19-04-2016 AMED_5751 48c54d75ba4aaaf723fbc743d7dd50ea 408 PANTHER PTHR32507 4 371 1.6E-51 T 19-04-2016 AMED_5751 48c54d75ba4aaaf723fbc743d7dd50ea 408 Pfam PF00999 Sodium/hydrogen exchanger family 9 378 9.8E-42 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_7612 ed98703e4950c4f998c53c00ee100710 323 PANTHER PTHR33371:SF6 10 320 1.4E-99 T 19-04-2016 AMED_7612 ed98703e4950c4f998c53c00ee100710 323 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 11 302 3.7E-60 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7612 ed98703e4950c4f998c53c00ee100710 323 Pfam PF02470 MlaD protein 41 117 7.7E-15 T 19-04-2016 IPR003399 Mce/MlaD AMED_7612 ed98703e4950c4f998c53c00ee100710 323 PANTHER PTHR33371 10 320 1.4E-99 T 19-04-2016 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Gene3D G3DSA:1.10.8.50 143 282 5.5E-44 T 19-04-2016 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 PANTHER PTHR22993:SF15 1 285 4.0E-107 T 19-04-2016 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SUPERFAMILY SSF46946 141 230 3.39E-25 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SMART SM01232 141 233 9.0E-38 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Gene3D G3DSA:3.20.190.10 2 123 1.0E-39 T 19-04-2016 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Pfam PF06827 Zinc finger found in FPG and IleRS 256 283 1.0E-7 T 19-04-2016 IPR010663 Zinc finger, FPG/IleRS-type AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SUPERFAMILY SSF57716 233 282 7.7E-15 T 19-04-2016 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 141 228 1.1E-21 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 119 2.4E-36 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SUPERFAMILY SSF81624 2 150 8.5E-37 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 PANTHER PTHR22993 1 285 4.0E-107 T 19-04-2016 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 281 8.8E-87 T 19-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 282 40.584 T 19-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMED_1798 02b763e9ad7ac42f2e8dd0f3d9ed3303 289 SMART SM00898 2 121 5.0E-48 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMED_7524 60fa7d5f8667d2d459277467e4fb7e7b 209 PANTHER PTHR10108 9 181 5.9E-28 T 19-04-2016 AMED_7524 60fa7d5f8667d2d459277467e4fb7e7b 209 PANTHER PTHR10108:SF811 9 181 5.9E-28 T 19-04-2016 AMED_7524 60fa7d5f8667d2d459277467e4fb7e7b 209 Gene3D G3DSA:3.40.50.150 4 182 1.4E-35 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7524 60fa7d5f8667d2d459277467e4fb7e7b 209 Pfam PF13649 Methyltransferase domain 45 136 3.5E-19 T 19-04-2016 AMED_7524 60fa7d5f8667d2d459277467e4fb7e7b 209 SUPERFAMILY SSF53335 5 208 3.31E-35 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3655 e688af1af178c284f873978d699fd1b8 256 Pfam PF12730 ABC-2 family transporter protein 3 175 2.9E-6 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_1983 38b2dba3527fecb6c181d69abf1bd1f9 192 Pfam PF00005 ABC transporter 19 141 2.0E-15 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1983 38b2dba3527fecb6c181d69abf1bd1f9 192 SUPERFAMILY SSF52540 3 141 2.33E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1983 38b2dba3527fecb6c181d69abf1bd1f9 192 PANTHER PTHR24220 4 141 2.5E-60 T 19-04-2016 AMED_1983 38b2dba3527fecb6c181d69abf1bd1f9 192 PANTHER PTHR24220:SF438 4 141 2.5E-60 T 19-04-2016 AMED_1983 38b2dba3527fecb6c181d69abf1bd1f9 192 Gene3D G3DSA:3.40.50.300 3 141 4.2E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 SUPERFAMILY SSF55347 132 217 1.29E-28 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 SUPERFAMILY SSF55347 259 309 1.29E-28 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 126 1.5E-23 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 PANTHER PTHR22604:SF128 258 410 2.5E-141 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 SUPERFAMILY SSF51735 6 158 3.75E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 PANTHER PTHR22604:SF128 5 213 2.5E-141 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 139 216 2.2E-18 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 PANTHER PTHR22604 5 213 2.5E-141 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 PANTHER PTHR22604 258 410 2.5E-141 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 Gene3D G3DSA:3.30.360.10 342 401 1.4E-54 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 Gene3D G3DSA:3.30.360.10 260 308 1.4E-54 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 Gene3D G3DSA:3.30.360.10 144 216 1.4E-54 T 19-04-2016 AMED_4434 435b7d5bfc28362ba357714cdf7920bd 411 Gene3D G3DSA:3.40.50.720 6 143 2.0E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2038 f81e80bd05219afeada15088c17a6141 389 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 22 373 33.867 T 19-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMED_2038 f81e80bd05219afeada15088c17a6141 389 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 24 366 4.0E-131 T 19-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMED_2038 f81e80bd05219afeada15088c17a6141 389 Pfam PF04551 GcpE protein 27 367 2.4E-136 T 19-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMED_2038 f81e80bd05219afeada15088c17a6141 389 PANTHER PTHR30454 23 375 1.2E-199 T 19-04-2016 AMED_2038 f81e80bd05219afeada15088c17a6141 389 SUPERFAMILY SSF51717 52 225 1.88E-10 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_2038 f81e80bd05219afeada15088c17a6141 389 PIRSF PIRSF004640 18 378 4.7E-146 T 19-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMED_2038 f81e80bd05219afeada15088c17a6141 389 Gene3D G3DSA:3.20.20.70 20 141 2.0E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2038 f81e80bd05219afeada15088c17a6141 389 SUPERFAMILY SSF56014 282 369 3.92E-11 T 19-04-2016 AMED_1159 942c36083ef35e85ca926e3e9b02ae50 170 SUPERFAMILY SSF55961 6 165 7.95E-29 T 19-04-2016 AMED_1159 942c36083ef35e85ca926e3e9b02ae50 170 Gene3D G3DSA:3.30.530.20 6 165 2.3E-26 T 19-04-2016 IPR023393 START-like domain AMED_1159 942c36083ef35e85ca926e3e9b02ae50 170 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 161 1.9E-20 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 PANTHER PTHR32438 410 649 2.7E-202 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 PANTHER PTHR32438 299 392 2.7E-202 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 Gene3D G3DSA:2.130.10.140 60 500 8.3E-83 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 SUPERFAMILY SSF110296 52 457 1.26E-80 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 SUPERFAMILY SSF110296 465 780 4.71E-39 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 PANTHER PTHR32438:SF9 410 649 2.7E-202 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 PANTHER PTHR32438:SF9 299 392 2.7E-202 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 SUPERFAMILY SSF49384 810 917 1.19E-33 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 Gene3D G3DSA:2.60.40.290 815 918 2.0E-35 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 SMART SM00637 816 916 5.5E-45 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 Gene3D G3DSA:2.130.10.140 545 777 3.5E-42 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 PANTHER PTHR32438:SF9 44 282 2.7E-202 T 19-04-2016 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 Pfam PF00553 Cellulose binding domain 816 916 3.9E-33 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5179 4fe018db2ef03d3ca15d7787e19c30d0 919 PANTHER PTHR32438 44 282 2.7E-202 T 19-04-2016 AMED_5150 c451690243ce2ec6d01933cfe487bd0e 290 Gene3D G3DSA:2.30.140.10 5 52 7.0E-4 T 19-04-2016 AMED_5150 c451690243ce2ec6d01933cfe487bd0e 290 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 1 277 16.526 T 19-04-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 AMED_5150 c451690243ce2ec6d01933cfe487bd0e 290 Gene3D G3DSA:3.40.50.150 53 280 2.3E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5150 c451690243ce2ec6d01933cfe487bd0e 290 PANTHER PTHR11558 7 227 1.3E-28 T 19-04-2016 AMED_5150 c451690243ce2ec6d01933cfe487bd0e 290 Pfam PF01564 Spermine/spermidine synthase 15 207 2.8E-18 T 19-04-2016 AMED_5150 c451690243ce2ec6d01933cfe487bd0e 290 SUPERFAMILY SSF53335 4 270 1.27E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 140 156 - T 19-04-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 PANTHER PTHR10362 1 502 2.5E-210 T 19-04-2016 AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 PANTHER PTHR10362:SF7 1 502 2.5E-210 T 19-04-2016 AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 505 1.2E-198 T 19-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 Gene3D G3DSA:1.10.275.10 3 198 1.2E-67 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 Gene3D G3DSA:1.20.200.10 199 504 1.4E-117 T 19-04-2016 AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 Pfam PF00221 Aromatic amino acid lyase 12 472 2.5E-179 T 19-04-2016 IPR001106 Aromatic amino acid lyase AMED_1265 cc875bad2ac1b4a2c7b30fbebb13dc41 508 SUPERFAMILY SSF48557 3 501 7.85E-180 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_2042 77077f742d5583ecc900cc4e47be3af8 130 SUPERFAMILY SSF54593 7 125 2.55E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2042 77077f742d5583ecc900cc4e47be3af8 130 Gene3D G3DSA:3.10.180.10 6 126 6.1E-27 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2042 77077f742d5583ecc900cc4e47be3af8 130 PANTHER PTHR34109:SF3 5 126 5.0E-26 T 19-04-2016 AMED_2042 77077f742d5583ecc900cc4e47be3af8 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 122 5.8E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_2042 77077f742d5583ecc900cc4e47be3af8 130 PANTHER PTHR34109 5 126 5.0E-26 T 19-04-2016 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 Gene3D G3DSA:3.40.47.10 273 388 3.8E-54 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 Gene3D G3DSA:3.40.47.10 145 183 3.8E-54 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 ProSitePatterns PS00099 Thiolases active site. 370 383 - T 19-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 PIRSF PIRSF000429 1 390 4.8E-112 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 SUPERFAMILY SSF53901 267 388 5.6E-41 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 PANTHER PTHR18919:SF71 2 390 3.3E-160 T 19-04-2016 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 Pfam PF02803 Thiolase, C-terminal domain 267 388 3.7E-39 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 4 387 4.0E-117 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 ProSitePatterns PS00737 Thiolases signature 2. 335 351 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 SUPERFAMILY SSF53901 2 266 1.08E-59 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 Gene3D G3DSA:3.40.47.10 184 272 2.5E-57 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 Gene3D G3DSA:3.40.47.10 2 122 2.5E-57 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 Pfam PF00108 Thiolase, N-terminal domain 2 259 3.0E-56 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_3836 45b40d1a75479d2eb155a704fcb9ec08 390 PANTHER PTHR18919 2 390 3.3E-160 T 19-04-2016 AMED_2942 5b6a440613aed45dfe4dbe968c1978e6 173 Pfam PF00037 4Fe-4S binding domain 20 39 4.6E-6 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_2942 5b6a440613aed45dfe4dbe968c1978e6 173 Gene3D G3DSA:1.10.1060.10 14 136 1.3E-12 T 19-04-2016 AMED_2942 5b6a440613aed45dfe4dbe968c1978e6 173 SUPERFAMILY SSF54862 103 136 3.56E-9 T 19-04-2016 AMED_2942 5b6a440613aed45dfe4dbe968c1978e6 173 SUPERFAMILY SSF54862 19 53 3.56E-9 T 19-04-2016 AMED_2942 5b6a440613aed45dfe4dbe968c1978e6 173 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 24 35 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 Gene3D G3DSA:1.20.140.10 222 380 1.1E-54 T 19-04-2016 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 220 2.1E-25 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 380 9.0E-41 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 PANTHER PTHR10909:SF190 3 380 6.6E-195 T 19-04-2016 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 Gene3D G3DSA:2.40.110.10 123 221 1.4E-37 T 19-04-2016 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 SUPERFAMILY SSF47203 230 380 4.19E-45 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 PANTHER PTHR10909 3 380 6.6E-195 T 19-04-2016 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 SUPERFAMILY SSF56645 4 243 8.77E-74 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 Gene3D G3DSA:1.10.540.10 5 120 1.7E-26 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7193 0bc661c6f96e1b8933e469a9c7365197 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 3.1E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3320 018b4c2472fdb9ac7db5afc7f8abdc8e 124 SUPERFAMILY SSF54593 8 123 3.49E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3320 018b4c2472fdb9ac7db5afc7f8abdc8e 124 Gene3D G3DSA:3.10.180.10 11 122 2.5E-24 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3320 018b4c2472fdb9ac7db5afc7f8abdc8e 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 119 4.7E-9 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 SMART SM00382 30 223 2.8E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 PANTHER PTHR24220:SF336 5 252 4.2E-112 T 19-04-2016 AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 Pfam PF00005 ABC transporter 21 165 6.6E-34 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 PANTHER PTHR24220 5 252 4.2E-112 T 19-04-2016 AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 Gene3D G3DSA:3.40.50.300 2 239 1.2E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0071 f176ec6cf40ee24232518634bd20f2bb 257 SUPERFAMILY SSF52540 3 237 1.43E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 PANTHER PTHR11941:SF90 2 272 1.2E-125 T 19-04-2016 AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 Pfam PF00378 Enoyl-CoA hydratase/isomerase 23 274 2.2E-48 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 PANTHER PTHR11941 2 272 1.2E-125 T 19-04-2016 AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 115 135 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 SUPERFAMILY SSF52096 11 275 4.23E-77 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 Gene3D G3DSA:1.10.12.10 217 275 2.6E-16 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_6970 71ee0999aa55144c62a52e09ab06ddcb 275 Gene3D G3DSA:3.90.226.10 13 215 3.2E-60 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 SUPERFAMILY SSF51126 14 381 1.57E-70 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 Gene3D G3DSA:2.160.20.10 267 483 5.7E-101 T 19-04-2016 IPR012334 Pectin lyase fold AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 Gene3D G3DSA:2.160.20.10 15 227 5.7E-101 T 19-04-2016 IPR012334 Pectin lyase fold AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 Pfam PF12708 Pectate lyase superfamily protein 19 129 1.9E-16 T 19-04-2016 IPR024535 Pectate lyase superfamily protein AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 PANTHER PTHR31339:SF0 20 380 2.9E-70 T 19-04-2016 AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 SMART SM00710 204 226 88.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 SMART SM00710 159 181 23.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 SMART SM00710 182 203 680.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 SMART SM00710 280 300 5200.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 SMART SM00710 236 257 8700.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 Pfam PF13229 Right handed beta helix region 140 244 3.6E-6 T 19-04-2016 AMED_4217 2ca588fe8e06f9a1e223c96996b54e30 496 PANTHER PTHR31339 20 380 2.9E-70 T 19-04-2016 AMED_1594 4f19ab928e94a29970d7c05e8a2d9db8 345 PANTHER PTHR18964:SF118 90 215 1.1E-20 T 19-04-2016 AMED_1594 4f19ab928e94a29970d7c05e8a2d9db8 345 Gene3D G3DSA:2.60.120.10 4 221 1.1E-40 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1594 4f19ab928e94a29970d7c05e8a2d9db8 345 PANTHER PTHR18964 90 215 1.1E-20 T 19-04-2016 AMED_1594 4f19ab928e94a29970d7c05e8a2d9db8 345 Gene3D G3DSA:2.60.120.10 264 336 2.5E-14 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1594 4f19ab928e94a29970d7c05e8a2d9db8 345 SUPERFAMILY SSF51182 4 338 2.34E-51 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 Gene3D G3DSA:3.30.70.660 82 216 1.1E-33 T 19-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 PANTHER PTHR11142:SF0 5 221 1.6E-59 T 19-04-2016 AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 Gene3D G3DSA:3.30.70.580 4 80 5.6E-15 T 19-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 SUPERFAMILY SSF55120 3 224 1.08E-53 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 PIRSF PIRSF001430 1 235 3.8E-52 T 19-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 PANTHER PTHR11142 5 221 1.6E-59 T 19-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_0710 8f70c1d88519b4a18ef5e0a81192343e 238 Pfam PF01416 tRNA pseudouridine synthase 119 219 6.1E-22 T 19-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_6923 a624879f4218152894446d4c32d2b147 583 Pfam PF00733 Asparagine synthase 185 575 1.0E-31 T 19-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AMED_6923 a624879f4218152894446d4c32d2b147 583 Gene3D G3DSA:3.60.20.10 63 166 1.5E-8 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6923 a624879f4218152894446d4c32d2b147 583 SUPERFAMILY SSF52402 430 556 6.7E-28 T 19-04-2016 AMED_6923 a624879f4218152894446d4c32d2b147 583 SUPERFAMILY SSF52402 176 326 6.7E-28 T 19-04-2016 AMED_6923 a624879f4218152894446d4c32d2b147 583 SUPERFAMILY SSF56235 57 166 1.16E-9 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6923 a624879f4218152894446d4c32d2b147 583 PIRSF PIRSF001589 33 581 6.1E-36 T 19-04-2016 AMED_6923 a624879f4218152894446d4c32d2b147 583 Gene3D G3DSA:3.40.50.620 176 322 6.2E-27 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6923 a624879f4218152894446d4c32d2b147 583 Gene3D G3DSA:3.40.50.620 426 575 6.2E-27 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2480 b34410d04d19dab2519b3ff5c6a6c5af 176 Pfam PF13302 Acetyltransferase (GNAT) domain 7 145 5.1E-17 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2480 b34410d04d19dab2519b3ff5c6a6c5af 176 Gene3D G3DSA:3.40.630.30 7 172 7.8E-36 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2480 b34410d04d19dab2519b3ff5c6a6c5af 176 SUPERFAMILY SSF55729 7 169 1.15E-33 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2480 b34410d04d19dab2519b3ff5c6a6c5af 176 PANTHER PTHR13256 7 172 8.9E-28 T 19-04-2016 AMED_2480 b34410d04d19dab2519b3ff5c6a6c5af 176 PANTHER PTHR13256:SF43 7 172 8.9E-28 T 19-04-2016 AMED_6614 e8394177f23805166362cf81e21c700b 271 Pfam PF01255 Putative undecaprenyl diphosphate synthase 42 262 3.1E-72 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_6614 e8394177f23805166362cf81e21c700b 271 PANTHER PTHR10291 35 270 8.4E-116 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_6614 e8394177f23805166362cf81e21c700b 271 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 208 225 - T 19-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 AMED_6614 e8394177f23805166362cf81e21c700b 271 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 35 263 36.977 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_6614 e8394177f23805166362cf81e21c700b 271 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 35 262 3.0E-74 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_6614 e8394177f23805166362cf81e21c700b 271 SUPERFAMILY SSF64005 35 258 5.62E-82 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_6614 e8394177f23805166362cf81e21c700b 271 PANTHER PTHR10291:SF0 35 270 8.4E-116 T 19-04-2016 AMED_6614 e8394177f23805166362cf81e21c700b 271 Gene3D G3DSA:3.40.1180.10 31 268 1.3E-88 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 PANTHER PTHR18968:SF86 5 517 1.9E-233 T 19-04-2016 AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 377 514 4.1E-29 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 PANTHER PTHR18968 5 517 1.9E-233 T 19-04-2016 AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 SUPERFAMILY SSF52518 4 182 6.87E-37 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 1.0E-31 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 SUPERFAMILY SSF52518 337 518 1.54E-43 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 Gene3D G3DSA:3.40.50.970 2 183 5.6E-41 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7884 e88c16d9daee1d2c323d7819d8e372c5 520 Gene3D G3DSA:3.40.50.970 335 518 4.3E-47 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_6108 83c3f92020ba9215ae1df6b09b1334c9 320 Pfam PF03741 Integral membrane protein TerC family 69 272 1.7E-50 T 19-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 AMED_6108 83c3f92020ba9215ae1df6b09b1334c9 320 PANTHER PTHR30238:SF0 2 320 1.8E-145 T 19-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMED_6108 83c3f92020ba9215ae1df6b09b1334c9 320 PANTHER PTHR30238 2 320 1.8E-145 T 19-04-2016 AMED_6108 83c3f92020ba9215ae1df6b09b1334c9 320 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 4 311 4.0E-117 T 19-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMED_3181 9d9f86d06ee4f709ee403a3c2a742cec 258 Pfam PF13714 Phosphoenolpyruvate phosphomutase 9 244 8.0E-70 T 19-04-2016 AMED_3181 9d9f86d06ee4f709ee403a3c2a742cec 258 PANTHER PTHR21631:SF18 5 239 2.5E-58 T 19-04-2016 AMED_3181 9d9f86d06ee4f709ee403a3c2a742cec 258 PANTHER PTHR21631 5 239 2.5E-58 T 19-04-2016 AMED_3181 9d9f86d06ee4f709ee403a3c2a742cec 258 SUPERFAMILY SSF51621 4 246 6.73E-55 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_3181 9d9f86d06ee4f709ee403a3c2a742cec 258 Gene3D G3DSA:3.20.20.60 5 227 5.8E-62 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1424 03c0eae5fee811c02022fe81714ce203 106 Pfam PF02426 Muconolactone delta-isomerase 18 91 1.6E-6 T 19-04-2016 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.9E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.9E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.9E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.9E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PANTHER PTHR24322:SF631 9 139 2.5E-37 T 19-04-2016 AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PANTHER PTHR24322:SF631 156 188 2.5E-37 T 19-04-2016 AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 Pfam PF00106 short chain dehydrogenase 6 198 1.7E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 Gene3D G3DSA:3.40.50.720 7 221 3.3E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PANTHER PTHR24322 9 139 2.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 PANTHER PTHR24322 156 188 2.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 187 0.0058 T 19-04-2016 AMED_6978 244fe72f04c63cf58bba5e412c0c5981 250 SUPERFAMILY SSF51735 6 246 1.63E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8226 5322840515c447a33a3eb7b1beca35f8 393 Gene3D G3DSA:2.120.10.30 20 392 1.2E-75 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8226 5322840515c447a33a3eb7b1beca35f8 393 SUPERFAMILY SSF50952 26 382 3.53E-35 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_8226 5322840515c447a33a3eb7b1beca35f8 393 Pfam PF07995 Glucose / Sorbosone dehydrogenase 51 382 8.6E-75 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_8226 5322840515c447a33a3eb7b1beca35f8 393 PANTHER PTHR19328 42 269 8.7E-41 T 19-04-2016 AMED_2575 f4177a00e56198f7640613573469ace9 205 PIRSF PIRSF035170 13 199 1.7E-41 T 19-04-2016 IPR009218 Predicted HD phosphohydrolase AMED_2575 f4177a00e56198f7640613573469ace9 205 PANTHER PTHR21174 17 205 8.1E-29 T 19-04-2016 IPR009218 Predicted HD phosphohydrolase AMED_2575 f4177a00e56198f7640613573469ace9 205 Gene3D G3DSA:1.10.3210.10 24 133 9.3E-7 T 19-04-2016 IPR006674 HD domain AMED_2575 f4177a00e56198f7640613573469ace9 205 SUPERFAMILY SSF109604 17 185 1.49E-24 T 19-04-2016 AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 SUPERFAMILY SSF51306 24 132 2.49E-22 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 93 112 6.8E-9 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 70 82 6.8E-9 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 20 36 6.8E-9 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 Pfam PF00717 Peptidase S24-like 26 80 1.3E-9 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 PANTHER PTHR12383 4 129 7.9E-15 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 ProSitePatterns PS00761 Signal peptidases I signature 3. 98 111 - T 19-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMED_3939 222e9a7cd19f5e4cad29d640a7776392 135 Gene3D G3DSA:2.10.109.10 25 131 2.2E-18 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_3820 cdf54336a9c3859cc8480018bbda2092 214 SUPERFAMILY SSF46689 16 86 1.33E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3820 cdf54336a9c3859cc8480018bbda2092 214 SUPERFAMILY SSF48498 85 194 3.06E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3820 cdf54336a9c3859cc8480018bbda2092 214 PANTHER PTHR30055 2 198 1.0E-19 T 19-04-2016 AMED_3820 cdf54336a9c3859cc8480018bbda2092 214 Gene3D G3DSA:1.10.357.10 17 206 1.6E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3820 cdf54336a9c3859cc8480018bbda2092 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 3.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PANTHER PTHR19370:SF113 12 220 4.7E-41 T 19-04-2016 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 SUPERFAMILY SSF52343 96 203 1.05E-19 T 19-04-2016 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PANTHER PTHR19370 12 220 4.7E-41 T 19-04-2016 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 Gene3D G3DSA:3.40.50.80 105 197 1.9E-14 T 19-04-2016 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 247 255 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 109 128 6.6E-22 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 50 64 6.6E-22 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 74 88 6.6E-22 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 28 38 6.6E-22 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 PRINTS PR00409 Phthalate dioxygenase reductase family signature 38 50 6.6E-22 T 19-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 SUPERFAMILY SSF54292 195 291 1.97E-25 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 SUPERFAMILY SSF63380 6 98 4.54E-23 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 222 283 1.1E-11 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 Gene3D G3DSA:3.10.20.30 198 291 4.9E-24 T 19-04-2016 IPR012675 Beta-grasp domain AMED_5987 79d202632c7911be24cbc48a8d75dc4b 293 Gene3D G3DSA:2.40.30.10 6 99 5.1E-28 T 19-04-2016 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 SMART SM00421 151 208 1.4E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 PANTHER PTHR26402 11 214 5.9E-34 T 19-04-2016 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.4E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.4E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.4E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 SMART SM00448 11 121 6.3E-10 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 206 6.2E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 PANTHER PTHR26402:SF151 11 214 5.9E-34 T 19-04-2016 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 SUPERFAMILY SSF52172 11 138 1.31E-16 T 19-04-2016 IPR011006 CheY-like superfamily AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 Gene3D G3DSA:1.10.10.10 127 214 1.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 Gene3D G3DSA:3.40.50.2300 10 126 5.5E-19 T 19-04-2016 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 Pfam PF00072 Response regulator receiver domain 15 122 3.6E-12 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2249 c6aed6d55ed1db6665054530b91c330c 215 SUPERFAMILY SSF46894 145 214 1.02E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1204 5c6c66c78a9e8c3d2302dd1a8d757dad 276 PANTHER PTHR30193:SF5 7 270 1.6E-71 T 19-04-2016 AMED_1204 5c6c66c78a9e8c3d2302dd1a8d757dad 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 261 4.3E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1204 5c6c66c78a9e8c3d2302dd1a8d757dad 276 PANTHER PTHR30193 7 270 1.6E-71 T 19-04-2016 AMED_1204 5c6c66c78a9e8c3d2302dd1a8d757dad 276 SUPERFAMILY SSF161098 16 269 2.09E-43 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1204 5c6c66c78a9e8c3d2302dd1a8d757dad 276 Gene3D G3DSA:1.10.3720.10 16 269 4.7E-41 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4911 c9d9fbb1794aa6d462daf15b2e47ea99 299 SUPERFAMILY SSF52980 53 208 2.57E-8 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_4911 c9d9fbb1794aa6d462daf15b2e47ea99 299 Pfam PF12705 PD-(D/E)XK nuclease superfamily 26 272 7.5E-35 T 19-04-2016 AMED_7519 d882f7c573426bff971cd7691e794e17 400 SUPERFAMILY SSF54556 298 357 5.34E-14 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_7519 d882f7c573426bff971cd7691e794e17 400 SMART SM00636 32 386 3.5E-103 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_7519 d882f7c573426bff971cd7691e794e17 400 SUPERFAMILY SSF51445 28 296 4.74E-77 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7519 d882f7c573426bff971cd7691e794e17 400 SUPERFAMILY SSF51445 356 393 4.74E-77 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7519 d882f7c573426bff971cd7691e794e17 400 Gene3D G3DSA:3.20.20.80 363 396 1.8E-80 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7519 d882f7c573426bff971cd7691e794e17 400 Gene3D G3DSA:3.20.20.80 21 299 1.8E-80 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7519 d882f7c573426bff971cd7691e794e17 400 ProSitePatterns PS01095 Chitinases family 18 active site. 167 175 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_7519 d882f7c573426bff971cd7691e794e17 400 Pfam PF00704 Glycosyl hydrolases family 18 33 386 3.8E-69 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_7519 d882f7c573426bff971cd7691e794e17 400 PANTHER PTHR11177 110 391 6.6E-84 T 19-04-2016 AMED_7519 d882f7c573426bff971cd7691e794e17 400 PANTHER PTHR11177 4 86 6.6E-84 T 19-04-2016 AMED_7519 d882f7c573426bff971cd7691e794e17 400 Gene3D G3DSA:3.10.50.10 300 358 4.3E-24 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_7452 e93c4e41f07f4233dc28733c52bac41a 225 Gene3D G3DSA:3.40.50.300 29 123 3.2E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.5E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 7.5E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.5E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 7.5E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.5E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.5E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 SUPERFAMILY SSF51735 3 268 9.45E-71 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4121 7442102652efa900e0231452412d7b20 330 PANTHER PTHR24320 1 230 8.2E-46 T 19-04-2016 AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 6.3E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.3E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.3E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 Pfam PF00106 short chain dehydrogenase 8 202 1.4E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4121 7442102652efa900e0231452412d7b20 330 Gene3D G3DSA:3.40.50.720 7 257 1.3E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4121 7442102652efa900e0231452412d7b20 330 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 194 0.0011 T 19-04-2016 AMED_4121 7442102652efa900e0231452412d7b20 330 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2872 0c92e5d28130da5dc546a78324f1552c 187 PANTHER PTHR13256 16 154 1.6E-18 T 19-04-2016 AMED_2872 0c92e5d28130da5dc546a78324f1552c 187 SUPERFAMILY SSF55729 11 154 2.88E-29 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2872 0c92e5d28130da5dc546a78324f1552c 187 Gene3D G3DSA:3.40.630.30 5 154 3.2E-30 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2872 0c92e5d28130da5dc546a78324f1552c 187 Pfam PF13302 Acetyltransferase (GNAT) domain 46 152 2.6E-16 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 Pfam PF07690 Major Facilitator Superfamily 3 392 7.3E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 SUPERFAMILY SSF103473 231 402 8.89E-44 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 SUPERFAMILY SSF103473 2 181 8.89E-44 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 SUPERFAMILY SSF103473 437 466 8.89E-44 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 Gene3D G3DSA:1.20.1250.20 243 404 4.3E-8 T 19-04-2016 AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 Gene3D G3DSA:1.20.1250.20 438 457 4.3E-8 T 19-04-2016 AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 PANTHER PTHR23501 1 468 2.7E-79 T 19-04-2016 AMED_2535 ae76b4979e385e4695761be7d9e891d3 468 Gene3D G3DSA:1.20.1250.20 2 173 2.9E-21 T 19-04-2016 AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 PANTHER PTHR24220:SF392 6 388 1.2E-183 T 19-04-2016 AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 SUPERFAMILY SSF52540 246 495 1.51E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 PANTHER PTHR24220 6 388 1.2E-183 T 19-04-2016 AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 SUPERFAMILY SSF52540 4 231 3.15E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 Gene3D G3DSA:3.40.50.300 251 501 9.3E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 Pfam PF00005 ABC transporter 20 171 1.9E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 Pfam PF00005 ABC transporter 278 433 6.3E-17 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 SMART SM00382 286 481 1.1E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 SMART SM00382 29 219 1.2E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4406 3a5bbfc31fe309d2dd3a361473c589b3 506 Gene3D G3DSA:3.40.50.300 3 233 1.4E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 SUPERFAMILY SSF53300 322 516 1.38E-20 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 Pfam PF00092 von Willebrand factor type A domain 325 511 2.2E-10 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 Gene3D G3DSA:3.40.190.10 15 155 8.2E-6 T 19-04-2016 AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 Gene3D G3DSA:3.40.190.10 238 278 8.2E-6 T 19-04-2016 AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 Pfam PF13531 Bacterial extracellular solute-binding protein 51 276 9.4E-24 T 19-04-2016 AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 SMART SM00327 320 514 2.1E-13 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 SUPERFAMILY SSF53850 50 281 8.45E-14 T 19-04-2016 AMED_7539 d903211a8300c9c44232d2e2d606ede8 526 Gene3D G3DSA:3.40.50.410 325 514 3.3E-12 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 SUPERFAMILY SSF46785 1 84 1.68E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 PANTHER PTHR30346:SF6 1 191 2.9E-41 T 19-04-2016 AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 PANTHER PTHR30346 1 191 2.9E-41 T 19-04-2016 AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-21 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 Gene3D G3DSA:1.10.10.10 1 85 1.4E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3659 1ba77f6435e8d3ecf380b2166f93ea32 306 SUPERFAMILY SSF53850 101 281 7.42E-5 T 19-04-2016 AMED_3698 ffeb23f90499d97f5fc0f2326226a0b1 251 Gene3D G3DSA:3.40.50.150 4 190 6.2E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3698 ffeb23f90499d97f5fc0f2326226a0b1 251 Pfam PF13649 Methyltransferase domain 42 140 3.7E-19 T 19-04-2016 AMED_3698 ffeb23f90499d97f5fc0f2326226a0b1 251 SUPERFAMILY SSF53335 4 231 3.84E-33 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3698 ffeb23f90499d97f5fc0f2326226a0b1 251 PANTHER PTHR10108 208 231 2.2E-22 T 19-04-2016 AMED_3698 ffeb23f90499d97f5fc0f2326226a0b1 251 PANTHER PTHR10108 29 170 2.2E-22 T 19-04-2016 AMED_3182 7f3c6066c6f0f04b0750bca0ea850ec3 187 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 8 181 1.4E-14 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_3182 7f3c6066c6f0f04b0750bca0ea850ec3 187 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 9 128 3.0E-11 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_3182 7f3c6066c6f0f04b0750bca0ea850ec3 187 Gene3D G3DSA:1.20.120.450 18 60 3.8E-4 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_3182 7f3c6066c6f0f04b0750bca0ea850ec3 187 SUPERFAMILY SSF109854 6 131 1.28E-13 T 19-04-2016 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 Gene3D G3DSA:1.20.140.10 222 381 6.5E-65 T 19-04-2016 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 Gene3D G3DSA:1.10.540.10 3 119 4.1E-41 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 SUPERFAMILY SSF47203 233 381 4.83E-52 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 PANTHER PTHR10909 2 381 1.4E-145 T 19-04-2016 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 221 1.3E-18 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 Gene3D G3DSA:2.40.110.10 123 221 7.5E-34 T 19-04-2016 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 SUPERFAMILY SSF56645 2 246 3.27E-77 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 118 2.0E-35 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_7920 314b810c9deb5bf0ed04eabdec6e55d5 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 381 1.1E-49 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 Gene3D G3DSA:3.40.50.10540 8 133 2.4E-8 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 Gene3D G3DSA:3.40.50.10540 196 389 1.9E-63 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 Pfam PF02515 CoA-transferase family III 199 380 1.9E-42 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 SUPERFAMILY SSF89796 10 190 1.96E-26 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 PANTHER PTHR24023 261 332 5.4E-13 T 19-04-2016 AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 SUPERFAMILY SSF89796 197 428 1.12E-54 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2646 a187a81d6d1354f33224a11fd0e53b51 445 PANTHER PTHR24023:SF593 261 332 5.4E-13 T 19-04-2016 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 SUPERFAMILY SSF53155 4 81 1.18E-18 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 3 160 36.736 T 19-04-2016 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 127 133 - T 19-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 PANTHER PTHR10815:SF5 4 156 2.6E-57 T 19-04-2016 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 Gene3D G3DSA:1.10.10.10 76 157 1.3E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 78 157 5.8E-33 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 5 74 8.4E-6 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 77 156 2.0E-35 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 SUPERFAMILY SSF46767 76 157 1.14E-32 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_4916 5d9097a14219f817f78f2e26c40a9d71 161 PANTHER PTHR10815 4 156 2.6E-57 T 19-04-2016 AMED_6761 71872255510cb9d73bc09be2702b7d87 132 Pfam PF13577 SnoaL-like domain 1 115 1.3E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6761 71872255510cb9d73bc09be2702b7d87 132 Gene3D G3DSA:3.10.450.50 2 126 6.2E-23 T 19-04-2016 IPR032710 NTF2-like domain AMED_6761 71872255510cb9d73bc09be2702b7d87 132 SUPERFAMILY SSF54427 1 123 4.1E-24 T 19-04-2016 IPR032710 NTF2-like domain AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 SMART SM00382 26 204 1.7E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 PANTHER PTHR24220 3 224 8.8E-106 T 19-04-2016 AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 Pfam PF00005 ABC transporter 18 156 1.5E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 SUPERFAMILY SSF52540 2 223 2.38E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 Gene3D G3DSA:3.40.50.300 1 220 1.0E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9265 22a3b0e308d6e10c1561d0f461dee6d6 304 PANTHER PTHR24220:SF523 3 224 8.8E-106 T 19-04-2016 AMED_4970 602e48db9f627b649d482d1db0783b5f 209 Pfam PF12079 Protein of unknown function (DUF3558) 18 204 8.6E-30 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_6102 cb30b983754c9cff330adbf45811db87 325 Gene3D G3DSA:1.10.260.40 3 51 6.9E-24 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6102 cb30b983754c9cff330adbf45811db87 325 Gene3D G3DSA:3.40.50.2300 52 173 1.1E-43 T 19-04-2016 AMED_6102 cb30b983754c9cff330adbf45811db87 325 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.2E-17 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6102 cb30b983754c9cff330adbf45811db87 325 PANTHER PTHR30146:SF4 1 325 1.3E-101 T 19-04-2016 AMED_6102 cb30b983754c9cff330adbf45811db87 325 Gene3D G3DSA:3.40.50.2300 174 303 3.2E-41 T 19-04-2016 AMED_6102 cb30b983754c9cff330adbf45811db87 325 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.3E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6102 cb30b983754c9cff330adbf45811db87 325 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.3E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6102 cb30b983754c9cff330adbf45811db87 325 SUPERFAMILY SSF47413 2 59 8.59E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6102 cb30b983754c9cff330adbf45811db87 325 SUPERFAMILY SSF53822 62 323 2.36E-67 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_6102 cb30b983754c9cff330adbf45811db87 325 PANTHER PTHR30146 1 325 1.3E-101 T 19-04-2016 AMED_6102 cb30b983754c9cff330adbf45811db87 325 Pfam PF13377 Periplasmic binding protein-like domain 167 323 1.1E-31 T 19-04-2016 AMED_6102 cb30b983754c9cff330adbf45811db87 325 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_6102 cb30b983754c9cff330adbf45811db87 325 SMART SM00354 1 71 1.6E-26 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5110 f9771fce511b3c14394bb326d8587605 435 Gene3D G3DSA:1.10.630.10 49 422 2.1E-35 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5110 f9771fce511b3c14394bb326d8587605 435 Pfam PF00067 Cytochrome P450 269 410 8.4E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5110 f9771fce511b3c14394bb326d8587605 435 SUPERFAMILY SSF48264 54 430 7.73E-39 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5110 f9771fce511b3c14394bb326d8587605 435 PANTHER PTHR24305 261 435 2.1E-20 T 19-04-2016 AMED_1012 5fa700ed4728c8871f7ff5b217d9c4fb 358 SUPERFAMILY SSF53756 7 355 3.61E-64 T 19-04-2016 AMED_1012 5fa700ed4728c8871f7ff5b217d9c4fb 358 Pfam PF00534 Glycosyl transferases group 1 184 336 1.9E-26 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_1012 5fa700ed4728c8871f7ff5b217d9c4fb 358 PANTHER PTHR12526 63 355 2.0E-44 T 19-04-2016 AMED_1012 5fa700ed4728c8871f7ff5b217d9c4fb 358 Gene3D G3DSA:3.40.50.2000 181 336 4.4E-28 T 19-04-2016 AMED_1012 5fa700ed4728c8871f7ff5b217d9c4fb 358 Pfam PF13439 Glycosyltransferase Family 4 17 172 5.4E-10 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Gene3D G3DSA:1.20.140.10 223 384 2.0E-42 T 19-04-2016 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 241 381 8.6E-30 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 123 3.6E-17 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 PANTHER PTHR10909:SF280 5 388 6.4E-181 T 19-04-2016 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Gene3D G3DSA:2.40.110.10 128 222 1.1E-29 T 19-04-2016 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Gene3D G3DSA:1.10.540.10 12 127 2.0E-23 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 SUPERFAMILY SSF56645 3 233 3.93E-60 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 SUPERFAMILY SSF47203 238 386 1.61E-39 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 222 1.7E-21 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 PANTHER PTHR10909 5 388 6.4E-181 T 19-04-2016 AMED_6469 8dcaef5f9c4afcfb0393fe94c7e12ceb 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_5560 bf4bb9f758e630df727e662562795402 103 PANTHER PTHR33169:SF13 5 92 1.3E-17 T 19-04-2016 AMED_5560 bf4bb9f758e630df727e662562795402 103 Pfam PF03551 Transcriptional regulator PadR-like family 10 81 1.6E-13 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_5560 bf4bb9f758e630df727e662562795402 103 PANTHER PTHR33169 5 92 1.3E-17 T 19-04-2016 AMED_5560 bf4bb9f758e630df727e662562795402 103 SUPERFAMILY SSF46785 7 91 1.48E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5560 bf4bb9f758e630df727e662562795402 103 Gene3D G3DSA:1.10.10.10 2 92 7.7E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 Pfam PF00106 short chain dehydrogenase 6 189 1.6E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PANTHER PTHR24322 147 178 2.7E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PANTHER PTHR24322 7 131 2.7E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 1.8E-5 T 19-04-2016 AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 Gene3D G3DSA:3.40.50.720 5 255 9.5E-66 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 SUPERFAMILY SSF51735 5 254 3.12E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 3.4E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.4E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.4E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PANTHER PTHR24322:SF513 147 178 2.7E-45 T 19-04-2016 AMED_4486 bf0d1e39a1d3df2e26ad394ef7317e4d 276 PANTHER PTHR24322:SF513 7 131 2.7E-45 T 19-04-2016 AMED_3003 fdfd4f53c3e094902f38865538e90e0b 74 Pfam PF14013 MT0933-like antitoxin protein 17 59 3.1E-11 T 19-04-2016 IPR028037 Antitoxin Rv0909/MT0933 AMED_2505 c15af9cbb3463aa2f6ab1bada1cfd541 411 Gene3D G3DSA:3.40.50.1820 135 401 1.2E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2505 c15af9cbb3463aa2f6ab1bada1cfd541 411 PANTHER PTHR23024 31 403 4.2E-96 T 19-04-2016 AMED_2505 c15af9cbb3463aa2f6ab1bada1cfd541 411 PANTHER PTHR23024:SF161 31 403 4.2E-96 T 19-04-2016 AMED_2505 c15af9cbb3463aa2f6ab1bada1cfd541 411 SUPERFAMILY SSF53474 127 400 4.65E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2505 c15af9cbb3463aa2f6ab1bada1cfd541 411 Pfam PF07859 alpha/beta hydrolase fold 167 380 1.9E-27 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 6.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 6.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5883 140763afff0906bbff3674ac9daef456 239 PANTHER PTHR24322 150 180 1.5E-58 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PANTHER PTHR24322 6 134 1.5E-58 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.6E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 PANTHER PTHR24322:SF413 150 180 1.5E-58 T 19-04-2016 AMED_5883 140763afff0906bbff3674ac9daef456 239 PANTHER PTHR24322:SF413 6 134 1.5E-58 T 19-04-2016 AMED_5883 140763afff0906bbff3674ac9daef456 239 Pfam PF00106 short chain dehydrogenase 2 191 7.8E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5883 140763afff0906bbff3674ac9daef456 239 SUPERFAMILY SSF51735 2 226 2.86E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5883 140763afff0906bbff3674ac9daef456 239 Gene3D G3DSA:3.40.50.720 2 232 1.3E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0887 bb19ba36847611d953f20157038b9288 185 Pfam PF04542 Sigma-70 region 2 26 95 9.9E-14 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0887 bb19ba36847611d953f20157038b9288 185 Gene3D G3DSA:1.10.1740.10 5 114 1.2E-27 T 19-04-2016 AMED_0887 bb19ba36847611d953f20157038b9288 185 PANTHER PTHR30173 1 184 3.7E-43 T 19-04-2016 AMED_0887 bb19ba36847611d953f20157038b9288 185 PANTHER PTHR30173:SF6 1 184 3.7E-43 T 19-04-2016 AMED_0887 bb19ba36847611d953f20157038b9288 185 SUPERFAMILY SSF88659 120 183 2.62E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0887 bb19ba36847611d953f20157038b9288 185 SUPERFAMILY SSF88946 6 108 1.55E-23 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0887 bb19ba36847611d953f20157038b9288 185 Pfam PF08281 Sigma-70, region 4 126 178 6.3E-14 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0887 bb19ba36847611d953f20157038b9288 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 181 4.6E-25 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0887 bb19ba36847611d953f20157038b9288 185 Gene3D G3DSA:1.10.10.10 120 184 2.6E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 Gene3D G3DSA:3.30.300.30 435 533 2.1E-31 T 19-04-2016 AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 SUPERFAMILY SSF56801 16 532 1.44E-163 T 19-04-2016 AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 Gene3D G3DSA:3.40.50.980 201 347 2.7E-53 T 19-04-2016 AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 Gene3D G3DSA:2.30.38.10 355 429 1.2E-28 T 19-04-2016 AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 523 1.4E-16 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 Gene3D G3DSA:3.40.50.980 18 200 1.2E-42 T 19-04-2016 AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 Pfam PF00501 AMP-binding enzyme 23 438 3.8E-114 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_1463 14e381a6b1d5b4da95154e75ecead855 548 PANTHER PTHR24095 4 532 2.4E-204 T 19-04-2016 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 SUPERFAMILY SSF54292 3 88 3.33E-22 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 SUPERFAMILY SSF47741 85 150 1.7E-28 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 Gene3D G3DSA:3.10.20.30 3 75 2.9E-23 T 19-04-2016 IPR012675 Beta-grasp domain AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 55 8.0E-5 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 Gene3D G3DSA:1.10.150.120 76 150 1.1E-30 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 PANTHER PTHR11908 1 148 5.4E-25 T 19-04-2016 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 PANTHER PTHR11908:SF82 1 148 5.4E-25 T 19-04-2016 AMED_2993 e99d14b845d3d18b900aaef19b2b3974 152 Pfam PF01799 [2Fe-2S] binding domain 74 145 2.6E-26 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_0813 db989aa518118ac7744ab31d20585932 471 Pfam PF00817 impB/mucB/samB family 1 97 4.6E-5 T 19-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0813 db989aa518118ac7744ab31d20585932 471 SUPERFAMILY SSF56672 1 175 1.11E-24 T 19-04-2016 AMED_0813 db989aa518118ac7744ab31d20585932 471 Gene3D G3DSA:1.10.150.20 106 175 1.8E-6 T 19-04-2016 AMED_0813 db989aa518118ac7744ab31d20585932 471 PANTHER PTHR35369 1 423 2.1E-65 T 19-04-2016 AMED_0813 db989aa518118ac7744ab31d20585932 471 PANTHER PTHR35369:SF2 1 423 2.1E-65 T 19-04-2016 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 SMART SM00481 3 66 5.3E-15 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 Pfam PF02811 PHP domain 4 69 1.1E-6 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 SUPERFAMILY SSF89550 3 79 8.5E-42 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 SUPERFAMILY SSF89550 158 260 8.5E-42 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 PANTHER PTHR30007 1 252 1.2E-56 T 19-04-2016 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 Gene3D G3DSA:3.20.20.140 3 84 6.7E-35 T 19-04-2016 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 Gene3D G3DSA:3.20.20.140 150 256 6.7E-35 T 19-04-2016 AMED_7026 20c8877e6eed09c5486f6ba6959eeb09 272 PANTHER PTHR30007:SF4 1 252 1.2E-56 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 Pfam PF02274 Amidinotransferase 22 400 1.2E-85 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 PANTHER PTHR12737 154 289 6.7E-106 T 19-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PANTHER PTHR12737 309 403 6.7E-106 T 19-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PANTHER PTHR12737:SF13 309 403 6.7E-106 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 SUPERFAMILY SSF55909 8 403 1.53E-113 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 PANTHER PTHR12737 9 95 6.7E-106 T 19-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 Hamap MF_00242 Arginine deiminase [arcA]. 5 403 41.533 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 Gene3D G3DSA:3.75.10.10 7 71 1.2E-118 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 Gene3D G3DSA:3.75.10.10 154 403 1.2E-118 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 PIRSF PIRSF006356 3 403 2.3E-133 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PANTHER PTHR12737:SF13 154 289 6.7E-106 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 PANTHER PTHR12737:SF13 9 95 6.7E-106 T 19-04-2016 AMED_0148 25377137649210d5b139018624b5b795 403 PRINTS PR01466 Bacterial arginine deiminase signature 154 172 2.0E-47 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PRINTS PR01466 Bacterial arginine deiminase signature 182 197 2.0E-47 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PRINTS PR01466 Bacterial arginine deiminase signature 6 26 2.0E-47 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PRINTS PR01466 Bacterial arginine deiminase signature 339 356 2.0E-47 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PRINTS PR01466 Bacterial arginine deiminase signature 359 373 2.0E-47 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0148 25377137649210d5b139018624b5b795 403 PRINTS PR01466 Bacterial arginine deiminase signature 382 400 2.0E-47 T 19-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 Pfam PF01039 Carboxyl transferase domain 50 527 1.0E-153 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 PANTHER PTHR22855:SF35 13 537 0.0 T 19-04-2016 AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 SUPERFAMILY SSF52096 27 273 4.98E-72 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 PANTHER PTHR22855 13 537 0.0 T 19-04-2016 AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 SUPERFAMILY SSF52096 280 537 3.15E-89 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 Gene3D G3DSA:3.90.226.10 282 529 1.2E-97 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7922 9a63d19316c6e2501b78cc3bf1c6a0ca 537 Gene3D G3DSA:3.90.226.10 29 274 3.9E-81 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 Gene3D G3DSA:3.40.50.2300 2 121 3.2E-35 T 19-04-2016 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 SMART SM00448 2 114 1.2E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 SUPERFAMILY SSF46894 143 213 2.31E-23 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 207 2.0E-21 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 Pfam PF00072 Response regulator receiver domain 4 114 3.1E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 PANTHER PTHR26402 2 212 3.9E-100 T 19-04-2016 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 7.9E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 7.9E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 7.9E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 PANTHER PTHR26402:SF564 2 212 3.9E-100 T 19-04-2016 AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 Gene3D G3DSA:1.10.10.10 122 213 2.7E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 SUPERFAMILY SSF52172 2 134 2.7E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_9260 c325a80d8ceb03a8db5448ef25e606a7 218 SMART SM00421 150 207 1.2E-27 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 SUPERFAMILY SSF51905 195 417 1.4E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PANTHER PTHR23024:SF214 54 160 4.4E-44 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 167 1.7E-7 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 1.7E-7 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 198 223 1.7E-7 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.7E-7 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 Gene3D G3DSA:3.50.50.60 302 411 2.3E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 Gene3D G3DSA:3.50.50.60 13 239 2.4E-15 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PANTHER PTHR23024 54 160 4.4E-44 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 SUPERFAMILY SSF51905 8 230 1.58E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 7 342 4.6E-107 T 19-04-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 4.3E-7 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 4.3E-7 T 19-04-2016 AMED_5039 0325b4009ebbe58626c817776cb17b07 432 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 198 216 4.3E-7 T 19-04-2016 AMED_8873 abd26f116a21fcebb5d55f0616d75c45 350 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 116 132 - T 19-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 AMED_8873 abd26f116a21fcebb5d55f0616d75c45 350 SUPERFAMILY SSF53474 79 345 7.81E-77 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8873 abd26f116a21fcebb5d55f0616d75c45 350 Pfam PF07859 alpha/beta hydrolase fold 116 322 3.3E-75 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_8873 abd26f116a21fcebb5d55f0616d75c45 350 PANTHER PTHR23024 87 349 1.8E-86 T 19-04-2016 AMED_8873 abd26f116a21fcebb5d55f0616d75c45 350 PANTHER PTHR23024:SF24 87 349 1.8E-86 T 19-04-2016 AMED_8873 abd26f116a21fcebb5d55f0616d75c45 350 Gene3D G3DSA:3.40.50.1820 50 347 2.9E-100 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3287 de232937092d8b9ed3c920cb3b987144 458 SMART SM00637 365 455 3.0E-23 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 Pfam PF00553 Cellulose binding domain 369 450 4.1E-18 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 SUPERFAMILY SSF49384 360 454 3.21E-21 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 ProSitePatterns PS00591 Glycosyl hydrolases family 10 (GH10) active site. 262 272 - T 19-04-2016 IPR031158 Glycosyl hydrolases family 10, active site MetaCyc: PWY-6784 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 SUPERFAMILY SSF51445 45 336 3.25E-107 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3287 de232937092d8b9ed3c920cb3b987144 458 Gene3D G3DSA:2.60.40.290 364 451 8.5E-23 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 Gene3D G3DSA:3.20.20.80 44 343 1.1E-111 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 SMART SM00633 83 334 2.7E-126 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 PANTHER PTHR31490 44 335 3.5E-128 T 19-04-2016 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 PRINTS PR00134 Glycosyl hydrolase family 10 signature 156 167 9.0E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 PRINTS PR00134 Glycosyl hydrolase family 10 signature 201 212 9.0E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 PRINTS PR00134 Glycosyl hydrolase family 10 signature 230 242 9.0E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 PRINTS PR00134 Glycosyl hydrolase family 10 signature 114 126 9.0E-16 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3287 de232937092d8b9ed3c920cb3b987144 458 Pfam PF00331 Glycosyl hydrolase family 10 44 333 6.2E-104 T 19-04-2016 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 PANTHER PTHR24096:SF193 11 598 1.0E-203 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:3.40.50.980 334 397 1.6E-28 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:3.40.50.980 192 284 1.6E-28 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_2445 3010fda264866e05de86695dc22e5c3f 598 SUPERFAMILY SSF56801 17 289 3.66E-115 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 SUPERFAMILY SSF56801 337 596 3.66E-115 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 Pfam PF00501 AMP-binding enzyme 24 466 3.7E-100 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:3.40.50.980 20 191 2.4E-34 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:2.30.38.10 398 460 1.7E-20 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 PANTHER PTHR24096 11 598 1.0E-203 T 19-04-2016 AMED_2445 3010fda264866e05de86695dc22e5c3f 598 Gene3D G3DSA:3.30.300.30 464 586 2.1E-4 T 19-04-2016 AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 SUPERFAMILY SSF51735 117 278 8.78E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 PANTHER PTHR11695 15 307 1.6E-68 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 Gene3D G3DSA:3.40.50.720 151 241 5.0E-16 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 PANTHER PTHR11695:SF294 15 307 1.6E-68 T 19-04-2016 AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 Pfam PF13602 Zinc-binding dehydrogenase 187 307 2.6E-18 T 19-04-2016 AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 Gene3D G3DSA:3.90.180.10 1 150 7.3E-40 T 19-04-2016 IPR011032 GroES-like AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 88 5.3E-5 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 SMART SM00829 10 307 1.6E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3477 ec5dc59843bc9f0b9bf29417c45813c1 309 SUPERFAMILY SSF50129 1 149 2.83E-34 T 19-04-2016 IPR011032 GroES-like AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Gene3D G3DSA:3.50.50.60 4 169 5.6E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Gene3D G3DSA:3.50.50.60 254 338 5.6E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 316 332 1.7E-35 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 1.7E-35 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 266 281 1.7E-35 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.7E-35 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 297 1.7E-35 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PANTHER PTHR13789:SF90 4 415 4.0E-85 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 PANTHER PTHR13789 4 415 4.0E-85 T 19-04-2016 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 SUPERFAMILY SSF51905 4 164 5.41E-64 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 SUPERFAMILY SSF51905 262 378 5.41E-64 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5697 e0b44959c13dbf4e9c13e5bc51ace1d0 471 Pfam PF01494 FAD binding domain 4 329 2.5E-75 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 Gene3D G3DSA:3.40.190.10 146 316 8.5E-15 T 19-04-2016 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 Pfam PF13416 Bacterial extracellular solute-binding protein 53 351 1.7E-23 T 19-04-2016 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 PANTHER PTHR30061:SF28 4 393 1.3E-64 T 19-04-2016 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 PANTHER PTHR30061 4 393 1.3E-64 T 19-04-2016 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 SUPERFAMILY SSF53850 22 411 8.28E-38 T 19-04-2016 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 Gene3D G3DSA:3.40.190.10 317 346 9.9E-14 T 19-04-2016 AMED_5190 af4c671cfa52c896459b5cfce22ff4f3 423 Gene3D G3DSA:3.40.190.10 9 139 9.9E-14 T 19-04-2016 AMED_1588 ae1b07424932494f496fa90be060f950 251 Gene3D G3DSA:2.40.50.40 136 200 1.1E-14 T 19-04-2016 AMED_1588 ae1b07424932494f496fa90be060f950 251 Gene3D G3DSA:3.40.50.2300 3 122 9.4E-31 T 19-04-2016 AMED_1588 ae1b07424932494f496fa90be060f950 251 PANTHER PTHR26402 4 120 1.2E-31 T 19-04-2016 AMED_1588 ae1b07424932494f496fa90be060f950 251 Pfam PF00072 Response regulator receiver domain 6 115 2.5E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1588 ae1b07424932494f496fa90be060f950 251 SMART SM00850 142 238 4.6E-29 T 19-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 AMED_1588 ae1b07424932494f496fa90be060f950 251 SMART SM00448 4 115 3.5E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1588 ae1b07424932494f496fa90be060f950 251 SUPERFAMILY SSF52172 2 124 7.97E-31 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1588 ae1b07424932494f496fa90be060f950 251 Pfam PF04397 LytTr DNA-binding domain 143 237 1.1E-19 T 19-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 AMED_7251 f37659a3128c0230503bf0202d730db4 300 SUPERFAMILY SSF51658 27 289 1.38E-35 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_7251 f37659a3128c0230503bf0202d730db4 300 Pfam PF01261 Xylose isomerase-like TIM barrel 41 224 1.7E-18 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_7251 f37659a3128c0230503bf0202d730db4 300 Gene3D G3DSA:3.20.20.150 28 289 3.9E-48 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_7251 f37659a3128c0230503bf0202d730db4 300 PANTHER PTHR12110 7 288 4.7E-22 T 19-04-2016 AMED_6101 c34da82d221e75c910d2faf6f7d49158 287 PANTHER PTHR11019 201 278 1.9E-15 T 19-04-2016 AMED_6101 c34da82d221e75c910d2faf6f7d49158 287 Gene3D G3DSA:1.10.10.60 239 271 1.1E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6101 c34da82d221e75c910d2faf6f7d49158 287 SMART SM00342 188 270 3.7E-7 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6101 c34da82d221e75c910d2faf6f7d49158 287 Pfam PF12833 Helix-turn-helix domain 199 271 7.9E-14 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6101 c34da82d221e75c910d2faf6f7d49158 287 PANTHER PTHR11019:SF126 201 278 1.9E-15 T 19-04-2016 AMED_4426 d5e01ec3986a7fe5de9fb34d550b3277 417 PANTHER PTHR13878 6 417 6.1E-55 T 19-04-2016 AMED_4426 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:3.30.43.10 6 65 1.5E-8 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_4426 d5e01ec3986a7fe5de9fb34d550b3277 417 Pfam PF04030 D-arabinono-1,4-lactone oxidase 290 413 1.8E-12 T 19-04-2016 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 AMED_4426 d5e01ec3986a7fe5de9fb34d550b3277 417 Gene3D G3DSA:3.30.465.10 74 177 1.1E-20 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_4426 d5e01ec3986a7fe5de9fb34d550b3277 417 Pfam PF01565 FAD binding domain 17 148 3.5E-17 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_4426 d5e01ec3986a7fe5de9fb34d550b3277 417 SUPERFAMILY SSF56176 6 177 5.32E-30 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_7843 3a601a8ae5d7c99a4f9c9d15fccaaa5d 243 SUPERFAMILY SSF53335 11 159 7.98E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7843 3a601a8ae5d7c99a4f9c9d15fccaaa5d 243 Pfam PF08241 Methyltransferase domain 36 115 5.4E-12 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_7843 3a601a8ae5d7c99a4f9c9d15fccaaa5d 243 Gene3D G3DSA:3.40.50.150 4 122 3.8E-18 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 PANTHER PTHR33164 14 136 2.6E-21 T 19-04-2016 AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 SUPERFAMILY SSF46785 7 136 1.1E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 5.7E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 5.7E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 5.7E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 Gene3D G3DSA:1.10.10.10 3 136 9.0E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 Pfam PF13463 Winged helix DNA-binding domain 37 97 4.2E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7443 242c2c8313cfdf407692b8e2ea4c8580 138 SMART SM00347 24 124 2.5E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8424 5cc4fd1748e3517ff4c27efa924d7ccb 161 Pfam PF13673 Acetyltransferase (GNAT) domain 56 138 2.1E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8424 5cc4fd1748e3517ff4c27efa924d7ccb 161 SUPERFAMILY SSF55729 3 152 9.39E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8424 5cc4fd1748e3517ff4c27efa924d7ccb 161 Gene3D G3DSA:3.40.630.30 3 150 1.9E-24 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4047 e2aeace083b8221abf33e272f34eea58 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 81 12.359 T 19-04-2016 AMED_4047 e2aeace083b8221abf33e272f34eea58 81 SUPERFAMILY SSF81333 17 78 4.45E-15 T 19-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMED_4047 e2aeace083b8221abf33e272f34eea58 81 Gene3D G3DSA:1.20.20.10 17 77 4.3E-19 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_4047 e2aeace083b8221abf33e272f34eea58 81 PRINTS PR00124 ATP synthase C subunit signature 37 52 2.4E-13 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_4047 e2aeace083b8221abf33e272f34eea58 81 PRINTS PR00124 ATP synthase C subunit signature 54 79 2.4E-13 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_4047 e2aeace083b8221abf33e272f34eea58 81 PRINTS PR00124 ATP synthase C subunit signature 16 35 2.4E-13 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_4047 e2aeace083b8221abf33e272f34eea58 81 Pfam PF00137 ATP synthase subunit C 17 77 1.5E-10 T 19-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Pfam PF07478 D-ala D-ala ligase C-terminus 150 354 1.5E-65 T 19-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 PANTHER PTHR23132:SF8 3 359 1.9E-149 T 19-04-2016 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 SUPERFAMILY SSF56059 143 357 2.12E-51 T 19-04-2016 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.30.470.20 133 150 5.4E-49 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.30.470.20 222 356 5.4E-49 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 357 39.929 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Pfam PF01820 D-ala D-ala ligase N-terminus 6 132 4.6E-34 T 19-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 299 327 - T 19-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 PIRSF PIRSF039102 2 362 1.0E-106 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 110 121 - T 19-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 PANTHER PTHR23132 3 359 1.9E-149 T 19-04-2016 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.30.1490.20 165 221 1.5E-20 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 Gene3D G3DSA:3.40.50.20 3 132 6.0E-37 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_1742 068cd51935193049a3ca00e9276c64fa 364 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 356 1.4E-104 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_1742 068cd51935193049a3ca00e9276c64fa 364 SUPERFAMILY SSF52440 4 142 1.25E-35 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_4477 552f8393a90e06d644d21a6fe3c0ed79 153 SUPERFAMILY SSF55961 4 108 6.88E-12 T 19-04-2016 AMED_4477 552f8393a90e06d644d21a6fe3c0ed79 153 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 120 1.8E-9 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_4477 552f8393a90e06d644d21a6fe3c0ed79 153 Gene3D G3DSA:3.30.530.20 2 100 1.2E-7 T 19-04-2016 IPR023393 START-like domain AMED_0472 2ab3ad5d148a2d3aa0d7c8a531b2b256 300 Pfam PF02517 CAAX protease self-immunity 150 249 3.7E-10 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_0091 b4384bd8e21bb927d6eaaf0ef91b917f 295 SUPERFAMILY SSF56112 10 260 1.24E-31 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0091 b4384bd8e21bb927d6eaaf0ef91b917f 295 Gene3D G3DSA:3.90.1200.10 96 255 3.2E-17 T 19-04-2016 AMED_0091 b4384bd8e21bb927d6eaaf0ef91b917f 295 Pfam PF01636 Phosphotransferase enzyme family 35 237 3.0E-15 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 Gene3D G3DSA:1.10.357.10 4 191 1.4E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 2.0E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 SUPERFAMILY SSF46689 4 72 3.44E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 SUPERFAMILY SSF48498 81 157 4.58E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.3E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.3E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7640 3a997ea38ece7e8f52a58b62484096ce 229 PANTHER PTHR30055 1 223 7.2E-19 T 19-04-2016 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 52 74 3.4E-16 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 212 233 3.4E-16 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 255 269 3.4E-16 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 75 95 3.4E-16 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 Pfam PF00487 Fatty acid desaturase 53 269 2.1E-19 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 PANTHER PTHR11351:SF3 24 310 1.3E-119 T 19-04-2016 AMED_4516 6e5a03c4f22e26a4522116ab3f2c00be 310 PANTHER PTHR11351 24 310 1.3E-119 T 19-04-2016 AMED_3363 7acdae446800ceff863150f5cf24de74 363 PIRSF PIRSF005096 3 357 2.8E-124 T 19-04-2016 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317|UniPathway: UPA00242 AMED_3363 7acdae446800ceff863150f5cf24de74 363 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 184 193 - T 19-04-2016 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317|UniPathway: UPA00242 AMED_3363 7acdae446800ceff863150f5cf24de74 363 SUPERFAMILY SSF74650 9 353 1.38E-111 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_3363 7acdae446800ceff863150f5cf24de74 363 Pfam PF01263 Aldose 1-epimerase 21 352 6.7E-89 T 19-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMED_3363 7acdae446800ceff863150f5cf24de74 363 Gene3D G3DSA:2.70.98.10 12 358 7.1E-127 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_3363 7acdae446800ceff863150f5cf24de74 363 PANTHER PTHR10091 15 357 3.0E-151 T 19-04-2016 AMED_0057 094d737080f64530ec03f210562780f0 411 SUPERFAMILY SSF49879 287 408 3.83E-30 T 19-04-2016 IPR008984 SMAD/FHA domain GO:0005515 AMED_0057 094d737080f64530ec03f210562780f0 411 Gene3D G3DSA:2.60.200.20 314 408 3.5E-27 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_0057 094d737080f64530ec03f210562780f0 411 Pfam PF12401 Protein of unknown function (DUF2662) 5 118 4.9E-36 T 19-04-2016 IPR022128 Protein of unknown function DUF3662 AMED_0057 094d737080f64530ec03f210562780f0 411 SMART SM00240 337 387 3.3E-13 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_0057 094d737080f64530ec03f210562780f0 411 Pfam PF00498 FHA domain 339 401 2.1E-17 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 22 36 - T 19-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 SUPERFAMILY SSF51445 13 461 1.22E-154 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 TIGRFAM TIGR03356 BGL: beta-galactosidase 19 457 2.7E-179 T 19-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 369 377 4.5E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 435 447 4.5E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 411 428 4.5E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 390 401 4.5E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 300 314 4.5E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PANTHER PTHR10353:SF36 16 463 7.5E-185 T 19-04-2016 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 Pfam PF00232 Glycosyl hydrolase family 1 16 462 1.6E-154 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 Gene3D G3DSA:3.20.20.80 8 462 4.9E-157 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8369 ae1848e7ea17d321c1f39a42c7b40ba1 467 PANTHER PTHR10353 16 463 7.5E-185 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_3350 c1e1647c801ca53046960b0f51c793c8 291 SUPERFAMILY SSF51679 1 259 1.03E-56 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3350 c1e1647c801ca53046960b0f51c793c8 291 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 10 234 2.8E-92 T 19-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c AMED_3350 c1e1647c801ca53046960b0f51c793c8 291 Pfam PF00296 Luciferase-like monooxygenase 1 234 8.4E-44 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3350 c1e1647c801ca53046960b0f51c793c8 291 PANTHER PTHR30011 22 237 8.2E-49 T 19-04-2016 AMED_3350 c1e1647c801ca53046960b0f51c793c8 291 Gene3D G3DSA:3.20.20.30 1 244 3.9E-64 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 SUPERFAMILY SSF49363 53 152 1.19E-14 T 19-04-2016 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 Gene3D G3DSA:3.60.21.10 156 531 1.6E-67 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 Gene3D G3DSA:2.60.40.380 60 153 3.1E-12 T 19-04-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 SUPERFAMILY SSF56300 156 498 7.6E-45 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 PANTHER PTHR22953 463 530 7.3E-88 T 19-04-2016 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 PANTHER PTHR22953 196 439 7.3E-88 T 19-04-2016 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 Pfam PF00149 Calcineurin-like phosphoesterase 210 391 2.2E-13 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 PANTHER PTHR22953 54 174 7.3E-88 T 19-04-2016 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 PANTHER PTHR22953:SF0 54 174 7.3E-88 T 19-04-2016 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 PANTHER PTHR22953:SF0 463 530 7.3E-88 T 19-04-2016 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 Pfam PF16656 Purple acid Phosphatase, N-terminal domain 59 140 7.9E-11 T 19-04-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 AMED_5062 fde5046a5b7ba22ac798ef4264176818 533 PANTHER PTHR22953:SF0 196 439 7.3E-88 T 19-04-2016 AMED_9216 22a4dda9eedea8f470162436c06d7491 401 PANTHER PTHR11516 63 395 2.4E-111 T 19-04-2016 AMED_9216 22a4dda9eedea8f470162436c06d7491 401 SUPERFAMILY SSF52518 38 390 3.04E-95 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_9216 22a4dda9eedea8f470162436c06d7491 401 Pfam PF00676 Dehydrogenase E1 component 74 349 1.3E-72 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_9216 22a4dda9eedea8f470162436c06d7491 401 Gene3D G3DSA:3.40.50.970 34 387 3.7E-124 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_9216 22a4dda9eedea8f470162436c06d7491 401 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 41 387 8.6E-128 T 19-04-2016 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMED_0879 7d705e81f22d30cdcc0caa1ff8897193 189 Gene3D G3DSA:2.60.120.180 2 188 3.3E-32 T 19-04-2016 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_0879 7d705e81f22d30cdcc0caa1ff8897193 189 Pfam PF01670 Glycosyl hydrolase family 12 50 187 2.4E-8 T 19-04-2016 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 AMED_0879 7d705e81f22d30cdcc0caa1ff8897193 189 SUPERFAMILY SSF49899 19 187 4.52E-23 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 9.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 9.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 9.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 Pfam PF00672 HAMP domain 166 231 2.0E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 SUPERFAMILY SSF47384 220 298 8.04E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 299 1.3E-6 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 Gene3D G3DSA:3.30.565.10 311 461 6.3E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 SMART SM00387 351 461 3.7E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 460 3.0E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 SUPERFAMILY SSF55874 311 459 3.41E-28 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 PANTHER PTHR24423 178 463 3.6E-45 T 19-04-2016 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 Gene3D G3DSA:1.10.287.130 228 295 3.9E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 SMART SM00304 184 236 6.6E-6 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_4944 5c325310dd053edfc9c62ec273f2c933 464 SMART SM00388 237 300 5.8E-7 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 321 338 - T 19-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 135 151 1.5E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 159 178 1.5E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 244 260 1.5E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 321 339 1.5E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PRINTS PR00133 Glycosyl hydrolase family 3 signature 205 221 1.5E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PANTHER PTHR30620:SF38 106 650 1.4E-169 T 19-04-2016 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PANTHER PTHR30620:SF38 61 87 1.4E-169 T 19-04-2016 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 72 398 1.2E-74 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PANTHER PTHR30620 106 650 1.4E-169 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 PANTHER PTHR30620 61 87 1.4E-169 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 Gene3D G3DSA:3.20.20.300 60 411 1.3E-104 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 437 647 1.3E-27 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 Gene3D G3DSA:3.40.50.1700 426 647 5.5E-53 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 SUPERFAMILY SSF52279 437 646 1.02E-39 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_7574 01cf72a6b15d72db1e4f1e22875d2a98 862 SUPERFAMILY SSF51445 57 435 2.42E-100 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 467 1.5E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 SMART SM00100 14 136 2.4E-8 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 Pfam PF00027 Cyclic nucleotide-binding domain 33 119 3.8E-14 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 SUPERFAMILY SSF51206 6 131 4.32E-21 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PANTHER PTHR24423:SF555 7 40 1.1E-106 T 19-04-2016 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PANTHER PTHR24423:SF555 283 466 1.1E-106 T 19-04-2016 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PANTHER PTHR24423:SF555 109 182 1.1E-106 T 19-04-2016 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PANTHER PTHR24423 7 40 1.1E-106 T 19-04-2016 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PANTHER PTHR24423 283 466 1.1E-106 T 19-04-2016 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PANTHER PTHR24423 109 182 1.1E-106 T 19-04-2016 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 SUPERFAMILY SSF55874 311 467 3.14E-38 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 Gene3D G3DSA:2.60.120.10 7 133 7.1E-18 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 41 57 - T 19-04-2016 IPR018488 Cyclic nucleotide-binding, conserved site AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 426 4.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 4.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 4.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 4.1E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 Gene3D G3DSA:3.30.565.10 323 467 4.7E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1473 2bcfddc2fc2f5eb07679437101219001 473 SMART SM00387 361 469 6.7E-27 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 SUPERFAMILY SSF52540 101 291 1.29E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 PANTHER PTHR10799 146 592 1.3E-28 T 19-04-2016 AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 PANTHER PTHR10799:SF556 146 592 1.3E-28 T 19-04-2016 AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 Gene3D G3DSA:3.40.50.300 108 286 1.5E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 Pfam PF00176 SNF2 family N-terminal domain 162 350 2.4E-18 T 19-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 SUPERFAMILY SSF52540 232 273 4.79E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 SUPERFAMILY SSF52540 413 575 4.79E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9226 c5947ccaee96e587b24aee4d9723c300 608 SMART SM00487 118 297 1.4E-8 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_3900 b6406a55619f2b32fb2f9e4cad9e677d 604 Pfam PF00723 Glycosyl hydrolases family 15 230 596 4.5E-52 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_3900 b6406a55619f2b32fb2f9e4cad9e677d 604 SUPERFAMILY SSF48208 203 603 5.35E-94 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3900 b6406a55619f2b32fb2f9e4cad9e677d 604 PANTHER PTHR31616:SF0 6 603 2.0E-154 T 19-04-2016 AMED_3900 b6406a55619f2b32fb2f9e4cad9e677d 604 Gene3D G3DSA:1.50.10.10 224 603 1.3E-86 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_3900 b6406a55619f2b32fb2f9e4cad9e677d 604 PANTHER PTHR31616 6 603 2.0E-154 T 19-04-2016 AMED_6813 2a97386021dc2fe16803fd6048bf6454 269 SUPERFAMILY SSF56281 2 234 2.66E-47 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6813 2a97386021dc2fe16803fd6048bf6454 269 PANTHER PTHR11935 24 222 2.9E-25 T 19-04-2016 AMED_6813 2a97386021dc2fe16803fd6048bf6454 269 Pfam PF00753 Metallo-beta-lactamase superfamily 24 215 4.6E-15 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6813 2a97386021dc2fe16803fd6048bf6454 269 SMART SM00849 21 215 8.4E-18 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6813 2a97386021dc2fe16803fd6048bf6454 269 PANTHER PTHR11935:SF95 24 222 2.9E-25 T 19-04-2016 AMED_6813 2a97386021dc2fe16803fd6048bf6454 269 Gene3D G3DSA:3.60.15.10 4 234 1.0E-45 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6074 55cd469485aa83bd4823dba60c30d024 448 SUPERFAMILY SSF118215 19 408 5.23E-105 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PANTHER PTHR11958:SF49 11 443 1.8E-241 T 19-04-2016 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 151 173 2.3E-27 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 198 217 2.3E-27 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 299 325 2.3E-27 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 2.3E-27 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 2.3E-27 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PRINTS PR00173 Glutamate-aspartate symporter signature 334 353 2.3E-27 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 PANTHER PTHR11958 11 443 1.8E-241 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 Pfam PF00375 Sodium:dicarboxylate symporter family 19 408 2.4E-100 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 Gene3D G3DSA:1.10.3860.10 13 413 1.2E-108 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_6074 55cd469485aa83bd4823dba60c30d024 448 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 46 61 - T 19-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 PANTHER PTHR10996 31 317 4.4E-100 T 19-04-2016 AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 186 208 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 215 231 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 SUPERFAMILY SSF51735 99 291 4.41E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 144 171 - T 19-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 PANTHER PTHR10996:SF161 31 317 4.4E-100 T 19-04-2016 AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 Gene3D G3DSA:3.40.50.720 21 109 6.9E-18 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 316 3.3E-17 T 19-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 Gene3D G3DSA:3.40.50.720 110 292 1.3E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 SUPERFAMILY SSF52283 2 132 4.04E-28 T 19-04-2016 AMED_8290 1d1e685d7dd9eb0fc7c0d7f0e21702a6 317 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 289 1.1E-51 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_5038 fbbbd514883ecef61a79b6001623e697 161 SUPERFAMILY SSF109854 5 158 1.28E-34 T 19-04-2016 AMED_5038 fbbbd514883ecef61a79b6001623e697 161 Pfam PF04978 Protein of unknown function (DUF664) 16 159 3.8E-39 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_5038 fbbbd514883ecef61a79b6001623e697 161 Gene3D G3DSA:1.20.120.450 5 158 1.1E-32 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 SMART SM00421 787 844 1.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:1.10.10.10 784 849 9.9E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 SUPERFAMILY SSF52540 20 225 7.18E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 SUPERFAMILY SSF46894 774 849 7.48E-17 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 Pfam PF00196 Bacterial regulatory proteins, luxR family 790 844 7.9E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 Pfam PF02399 Origin of replication binding protein 39 62 1.5E-4 T 19-04-2016 IPR003450 Replication origin-binding protein GO:0003688|GO:0005524|GO:0006260 AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:3.40.50.300 42 194 0.001 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:1.25.40.10 477 576 2.8E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3909 f77a9e6b975c43a7da492d81ae60d4c2 850 Gene3D G3DSA:1.25.40.10 628 748 2.8E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 54 219 5.1E-21 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 SUPERFAMILY SSF49785 382 583 2.04E-29 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 SMART SM00939 330 578 1.6E-37 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 SUPERFAMILY SSF53474 22 354 7.39E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 49 315 1.9E-53 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 PANTHER PTHR11731:SF148 254 350 3.9E-62 T 19-04-2016 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 342 585 1.4E-29 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 Gene3D G3DSA:2.60.120.260 357 454 2.6E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 Gene3D G3DSA:2.60.120.260 501 581 2.6E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 PANTHER PTHR11731 34 236 3.9E-62 T 19-04-2016 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 PANTHER PTHR11731 254 350 3.9E-62 T 19-04-2016 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 PANTHER PTHR11731:SF148 34 236 3.9E-62 T 19-04-2016 AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 Gene3D G3DSA:3.40.50.1820 7 215 5.1E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6004 19885a6a3c9c8a76bc23bd5e612760f2 609 Gene3D G3DSA:3.40.50.1820 258 356 5.1E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 Pfam PF01047 MarR family 48 103 4.0E-14 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 SUPERFAMILY SSF46785 13 156 9.03E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 PANTHER PTHR33164 26 163 2.5E-25 T 19-04-2016 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 PANTHER PTHR33164:SF2 26 163 2.5E-25 T 19-04-2016 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 1.6E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 1.6E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 1.6E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 129 149 1.6E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 Gene3D G3DSA:1.10.10.10 5 155 9.4E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 78 112 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_9127 5bd720c4c3bb4129236bbfaf6662f6cb 176 SMART SM00347 39 139 5.3E-21 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3725 295e09c05c3fc4822df6628705291d45 287 SUPERFAMILY SSF47413 30 79 1.89E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3725 295e09c05c3fc4822df6628705291d45 287 PANTHER PTHR35010:SF2 2 287 4.0E-76 T 19-04-2016 AMED_3725 295e09c05c3fc4822df6628705291d45 287 PANTHER PTHR35010 2 287 4.0E-76 T 19-04-2016 AMED_3725 295e09c05c3fc4822df6628705291d45 287 SMART SM00530 6 82 4.8E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3725 295e09c05c3fc4822df6628705291d45 287 Pfam PF13560 Helix-turn-helix domain 30 85 2.4E-12 T 19-04-2016 AMED_3725 295e09c05c3fc4822df6628705291d45 287 Gene3D G3DSA:1.10.260.40 6 81 1.5E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 8.2E-25 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 Pfam PF00381 PTS HPr component phosphorylation site 3 83 1.1E-22 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 PRINTS PR00107 Phosphocarrier protein signature 54 71 7.0E-11 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 7.0E-11 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 PRINTS PR00107 Phosphocarrier protein signature 39 54 7.0E-11 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 Gene3D G3DSA:3.30.1340.10 1 85 7.9E-25 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 19-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 SUPERFAMILY SSF55594 1 87 6.28E-21 T 19-04-2016 IPR000032 Phosphocarrier HPr protein-like AMED_2724 4d9cecb93e3d648b9686b4217976835b 88 PANTHER PTHR33705 1 87 1.4E-21 T 19-04-2016 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 SUPERFAMILY SSF51905 449 488 2.41E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 SUPERFAMILY SSF51905 10 319 2.41E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 11 489 1.2E-142 T 19-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 459 479 - T 19-04-2016 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 Gene3D G3DSA:3.50.50.60 147 148 5.8E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 Gene3D G3DSA:3.50.50.60 219 353 5.8E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 Gene3D G3DSA:3.50.50.60 11 100 5.8E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 Pfam PF01593 Flavin containing amine oxidoreductase 18 487 3.1E-36 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 PANTHER PTHR10668 11 487 2.3E-116 T 19-04-2016 AMED_2323 6a63589aa906883e5e7ded89e14cf626 490 PANTHER PTHR10668:SF75 11 487 2.3E-116 T 19-04-2016 AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 PANTHER PTHR23501 4 466 1.2E-98 T 19-04-2016 AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 ProSitePatterns PS00216 Sugar transport proteins signature 1. 77 94 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 SUPERFAMILY SSF103473 9 207 1.31E-57 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 SUPERFAMILY SSF103473 259 466 1.31E-57 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 Pfam PF07690 Major Facilitator Superfamily 28 421 4.9E-42 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 Gene3D G3DSA:1.20.1250.20 271 467 3.3E-12 T 19-04-2016 AMED_5534 350f38f85b8a52082f1d6e23f0fef077 479 Gene3D G3DSA:1.20.1250.20 16 204 3.0E-29 T 19-04-2016 AMED_4468 57e79a2522b28e3b94aa3dfcb5a45e28 144 SUPERFAMILY SSF55961 3 139 4.92E-17 T 19-04-2016 AMED_4468 57e79a2522b28e3b94aa3dfcb5a45e28 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 2 140 2.1E-13 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_4468 57e79a2522b28e3b94aa3dfcb5a45e28 144 Gene3D G3DSA:3.30.530.20 3 141 1.5E-12 T 19-04-2016 IPR023393 START-like domain AMED_1967 e2be46ad001dd51c4b8f58ce3312f0c5 125 SUPERFAMILY SSF52980 17 110 2.68E-17 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_1967 e2be46ad001dd51c4b8f58ce3312f0c5 125 PANTHER PTHR34039 7 125 2.1E-32 T 19-04-2016 AMED_1967 e2be46ad001dd51c4b8f58ce3312f0c5 125 PANTHER PTHR34039:SF1 7 125 2.1E-32 T 19-04-2016 AMED_1967 e2be46ad001dd51c4b8f58ce3312f0c5 125 Gene3D G3DSA:3.40.1350.10 17 125 4.6E-31 T 19-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 AMED_1967 e2be46ad001dd51c4b8f58ce3312f0c5 125 Pfam PF02021 Uncharacterised protein family UPF0102 18 108 3.5E-25 T 19-04-2016 IPR003509 Uncharacterised protein family UPF0102 AMED_1967 e2be46ad001dd51c4b8f58ce3312f0c5 125 Hamap MF_00048 UPF0102 protein YraN [yraN]. 11 121 20.586 T 19-04-2016 IPR003509 Uncharacterised protein family UPF0102 AMED_4867 cd4cb112fbf1632ebe03eb281c2e5786 209 PANTHER PTHR10204:SF4 1 147 1.6E-28 T 19-04-2016 AMED_4867 cd4cb112fbf1632ebe03eb281c2e5786 209 SUPERFAMILY SSF52218 1 208 6.92E-37 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_4867 cd4cb112fbf1632ebe03eb281c2e5786 209 PANTHER PTHR10204 1 147 1.6E-28 T 19-04-2016 AMED_4867 cd4cb112fbf1632ebe03eb281c2e5786 209 Pfam PF02525 Flavodoxin-like fold 4 193 3.6E-35 T 19-04-2016 IPR003680 Flavodoxin-like fold AMED_4867 cd4cb112fbf1632ebe03eb281c2e5786 209 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 209 21.35 T 19-04-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMED_4867 cd4cb112fbf1632ebe03eb281c2e5786 209 Gene3D G3DSA:3.40.50.360 1 200 7.5E-41 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_3401 23fc4e62e93d94cdefddb20c7a9fe064 209 Gene3D G3DSA:1.10.357.10 15 207 9.4E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3401 23fc4e62e93d94cdefddb20c7a9fe064 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 6.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3401 23fc4e62e93d94cdefddb20c7a9fe064 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 50 73 6.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3401 23fc4e62e93d94cdefddb20c7a9fe064 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 75 1.7E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3401 23fc4e62e93d94cdefddb20c7a9fe064 209 SUPERFAMILY SSF46689 17 90 1.05E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3401 23fc4e62e93d94cdefddb20c7a9fe064 209 PANTHER PTHR30055 12 205 1.5E-16 T 19-04-2016 AMED_7715 4b2c310775db09174acdcf4110c4ea00 331 Gene3D G3DSA:3.60.70.12 2 319 5.9E-90 T 19-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_7715 4b2c310775db09174acdcf4110c4ea00 331 PANTHER PTHR36512:SF3 1 331 1.2E-115 T 19-04-2016 AMED_7715 4b2c310775db09174acdcf4110c4ea00 331 Pfam PF03576 Peptidase family S58 2 314 2.1E-74 T 19-04-2016 IPR005321 Peptidase S58, DmpA AMED_7715 4b2c310775db09174acdcf4110c4ea00 331 PANTHER PTHR36512 1 331 1.2E-115 T 19-04-2016 AMED_7715 4b2c310775db09174acdcf4110c4ea00 331 SUPERFAMILY SSF56266 2 323 1.07E-73 T 19-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 528 547 3.2E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 549 566 3.2E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 502 518 3.2E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 379 396 3.2E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 453 464 3.2E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 Gene3D G3DSA:3.40.50.720 3 275 3.1E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1827 12ec341381fae40897e8ec0911442118 659 PANTHER PTHR24322:SF57 528 559 2.9E-44 T 19-04-2016 AMED_1827 12ec341381fae40897e8ec0911442118 659 PANTHER PTHR24322:SF57 382 512 2.9E-44 T 19-04-2016 AMED_1827 12ec341381fae40897e8ec0911442118 659 PANTHER PTHR24322 528 559 2.9E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PANTHER PTHR24322 382 512 2.9E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 SUPERFAMILY SSF51735 2 277 1.99E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1827 12ec341381fae40897e8ec0911442118 659 SUPERFAMILY SSF51735 320 359 1.99E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1827 12ec341381fae40897e8ec0911442118 659 Gene3D G3DSA:3.40.50.720 374 595 2.1E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 528 547 6.1E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 508 516 6.1E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 453 464 6.1E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 SUPERFAMILY SSF51735 374 594 7.92E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1827 12ec341381fae40897e8ec0911442118 659 Pfam PF00106 short chain dehydrogenase 379 567 1.8E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1827 12ec341381fae40897e8ec0911442118 659 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 378 564 0.001 T 19-04-2016 AMED_1827 12ec341381fae40897e8ec0911442118 659 Pfam PF07993 Male sterility protein 6 230 4.2E-44 T 19-04-2016 IPR013120 Male sterility, NAD-binding Reactome: REACT_22258 AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 64 1.8E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 1.8E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 81 96 1.8E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 33 48 1.8E-11 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 Pfam PF12840 Helix-turn-helix domain 31 90 1.3E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 Gene3D G3DSA:1.10.10.10 14 112 8.3E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 SUPERFAMILY SSF46785 23 111 1.39E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 PANTHER PTHR33154 4 109 6.3E-16 T 19-04-2016 AMED_2980 eff21738090f6dab53dbdd4038876cc5 119 SMART SM00418 31 110 3.0E-16 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5980 297689fc1618ab1f18e5d137125fa3a2 229 Gene3D G3DSA:3.20.20.370 15 226 3.9E-53 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_5980 297689fc1618ab1f18e5d137125fa3a2 229 Pfam PF01522 Polysaccharide deacetylase 35 141 6.8E-26 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_5980 297689fc1618ab1f18e5d137125fa3a2 229 SUPERFAMILY SSF88713 29 226 2.22E-54 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_5980 297689fc1618ab1f18e5d137125fa3a2 229 PANTHER PTHR10587 38 225 4.0E-40 T 19-04-2016 AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 171 224 4.1E-14 T 19-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 38 126 1.2E-12 T 19-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 Pfam PF05050 Methyltransferase FkbM domain 41 243 5.1E-16 T 19-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 SUPERFAMILY SSF53335 17 123 3.16E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 SUPERFAMILY SSF53335 170 245 3.16E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 Gene3D G3DSA:3.40.50.150 35 122 9.7E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4124 532dd4a44653f9c3b56a3bcc71a37d46 265 Gene3D G3DSA:3.40.50.150 170 210 9.7E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 Pfam PF08402 TOBE domain 277 353 1.8E-8 T 19-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:3.40.50.300 4 236 5.0E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 Pfam PF00005 ABC transporter 22 163 2.2E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 PANTHER PTHR24220:SF151 5 251 7.1E-159 T 19-04-2016 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 PANTHER PTHR24220 5 251 7.1E-159 T 19-04-2016 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:2.40.50.100 241 281 8.7E-6 T 19-04-2016 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:2.40.50.100 347 360 8.7E-6 T 19-04-2016 AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 SUPERFAMILY SSF52540 6 244 2.16E-82 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 SMART SM00382 30 213 2.4E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 SUPERFAMILY SSF50331 238 361 3.59E-27 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_0740 167d07d9c3335ec97829bedfd15c8d7d 362 Gene3D G3DSA:2.40.50.140 282 345 1.5E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 PANTHER PTHR22769:SF33 1 173 1.1E-27 T 19-04-2016 AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 PANTHER PTHR22769 1 173 1.1E-27 T 19-04-2016 AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 SUPERFAMILY SSF46785 127 197 4.35E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 Gene3D G3DSA:1.10.10.10 134 197 2.4E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 Gene3D G3DSA:3.90.79.10 7 133 9.4E-28 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 Pfam PF00293 NUDIX domain 6 106 6.9E-11 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_2222 9b5d07dfab47700c47c3d7a3905a0443 210 SUPERFAMILY SSF55811 3 123 2.57E-28 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8834 92dad241ec453236d68810d2504254e5 417 Gene3D G3DSA:1.20.1250.20 30 203 5.6E-8 T 19-04-2016 AMED_8834 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 293 317 3.3E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8834 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 351 373 3.3E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8834 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 379 399 3.3E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8834 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 262 281 3.3E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8834 92dad241ec453236d68810d2504254e5 417 PRINTS PR01035 Tetracycline resistance protein signature 233 249 3.3E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8834 92dad241ec453236d68810d2504254e5 417 Pfam PF07690 Major Facilitator Superfamily 32 276 4.5E-11 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8834 92dad241ec453236d68810d2504254e5 417 PANTHER PTHR23542:SF1 14 400 5.8E-54 T 19-04-2016 AMED_8834 92dad241ec453236d68810d2504254e5 417 Gene3D G3DSA:1.20.1250.20 295 399 3.8E-7 T 19-04-2016 AMED_8834 92dad241ec453236d68810d2504254e5 417 PANTHER PTHR23542 14 400 5.8E-54 T 19-04-2016 AMED_8834 92dad241ec453236d68810d2504254e5 417 SUPERFAMILY SSF103473 21 400 9.55E-27 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6616 773031ea4c6986b33ba6d547d1e7c05f 169 Pfam PF04505 Interferon-induced transmembrane protein 90 154 2.5E-11 T 19-04-2016 IPR007593 CD225/Dispanin family GO:0009607|GO:0016021 AMED_5295 558b5e65fe4861ce96810c50a7300ae4 172 SUPERFAMILY SSF53271 10 167 1.42E-36 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_5295 558b5e65fe4861ce96810c50a7300ae4 172 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 6 172 30.204 T 19-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 AMED_5295 558b5e65fe4861ce96810c50a7300ae4 172 PANTHER PTHR32315 9 169 2.3E-50 T 19-04-2016 AMED_5295 558b5e65fe4861ce96810c50a7300ae4 172 Gene3D G3DSA:3.40.50.2020 9 166 3.3E-47 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_3086 913ecdbd2b9e4e6117b96ad94ca0a326 283 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 76 280 5.5E-67 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_3086 913ecdbd2b9e4e6117b96ad94ca0a326 283 PANTHER PTHR11820:SF71 1 280 4.7E-130 T 19-04-2016 AMED_3086 913ecdbd2b9e4e6117b96ad94ca0a326 283 Gene3D G3DSA:3.90.850.10 67 281 5.3E-81 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_3086 913ecdbd2b9e4e6117b96ad94ca0a326 283 PANTHER PTHR11820 1 280 4.7E-130 T 19-04-2016 AMED_3086 913ecdbd2b9e4e6117b96ad94ca0a326 283 SUPERFAMILY SSF56529 64 280 1.28E-70 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 SMART SM00342 175 258 7.7E-16 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 Gene3D G3DSA:1.10.10.60 214 257 2.0E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 Gene3D G3DSA:1.10.10.60 161 213 1.8E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 PANTHER PTHR11019:SF126 173 266 1.2E-25 T 19-04-2016 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 SUPERFAMILY SSF46689 211 259 6.27E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 Pfam PF12833 Helix-turn-helix domain 181 257 2.6E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_2041 3442915d8d24352bdb89e1e09e96d2a9 275 PANTHER PTHR11019 173 266 1.2E-25 T 19-04-2016 AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PANTHER PTHR33164 36 153 8.9E-21 T 19-04-2016 AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 SUPERFAMILY SSF46785 30 141 1.16E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 SMART SM00347 29 129 5.0E-18 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 Gene3D G3DSA:1.10.10.10 30 142 3.2E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 Pfam PF01047 MarR family 39 91 2.0E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4320 8f5f5c3ed4ea2f8f72ef9b052c99af87 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.4E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1257 74f538f5f4b1ef17f1030c918f8cbf5c 132 Pfam PF03928 Haem-degrading 2 123 1.1E-15 T 19-04-2016 IPR005624 Haem-degrading AMED_1257 74f538f5f4b1ef17f1030c918f8cbf5c 132 SUPERFAMILY SSF143744 2 126 3.66E-21 T 19-04-2016 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 SUPERFAMILY SSF88659 105 161 1.05E-7 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 Gene3D G3DSA:1.10.1740.10 5 99 2.2E-9 T 19-04-2016 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 PANTHER PTHR30173 4 377 3.7E-120 T 19-04-2016 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 Pfam PF04542 Sigma-70 region 2 9 73 4.6E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 PANTHER PTHR30173:SF7 4 377 3.7E-120 T 19-04-2016 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 Gene3D G3DSA:1.10.10.10 104 162 1.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 Pfam PF08281 Sigma-70, region 4 110 158 5.2E-8 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6877 52c54fc747b0bd1d4a95034188e6a222 414 SUPERFAMILY SSF88946 6 90 1.45E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 Gene3D G3DSA:3.20.20.80 173 517 1.4E-100 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 34 171 6.1E-21 T 19-04-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PANTHER PTHR22600:SF21 34 515 5.6E-136 T 19-04-2016 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 175 490 6.3E-77 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PANTHER PTHR22600 34 515 5.6E-136 T 19-04-2016 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 SUPERFAMILY SSF51445 175 518 2.44E-102 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 169 186 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 454 470 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 305 323 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 327 340 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 257 274 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 472 489 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 127 147 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 PRINTS PR00738 Glycosyl hydrolase family 20 signature 198 219 1.2E-46 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 Gene3D G3DSA:3.30.379.10 21 172 3.2E-29 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_5066 2a54dc96426a0277b324f31c8bd50be1 532 SUPERFAMILY SSF55545 29 174 7.98E-26 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 91 294 5.4E-20 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 Gene3D G3DSA:2.40.50.140 3 51 2.6E-9 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 PANTHER PTHR15184 51 318 2.1E-136 T 19-04-2016 AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 SMART SM00382 101 258 1.5E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 PANTHER PTHR15184:SF34 51 318 2.1E-136 T 19-04-2016 AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 Pfam PF07497 Rho termination factor, RNA-binding domain 4 50 5.4E-7 T 19-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 SUPERFAMILY SSF52540 68 302 1.14E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 347 148.226 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMED_5877 505070f93285abf7f07a7e524f78fbe2 353 Gene3D G3DSA:3.40.50.300 68 341 2.6E-80 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 ProSitePatterns PS00054 Ribosomal protein S11 signature. 103 125 - T 19-04-2016 IPR018102 Ribosomal S11, conserved site AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 PANTHER PTHR11759 16 135 1.5E-68 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 Pfam PF00411 Ribosomal protein S11 25 134 3.8E-49 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 16 132 2.1E-58 T 19-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 135 33.988 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 Gene3D G3DSA:3.30.420.80 12 135 9.5E-57 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 PIRSF PIRSF002131 4 135 4.8E-54 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMED_0706 6eed574830fa6538108ee38a92bb8f8c 135 SUPERFAMILY SSF53137 20 135 1.35E-49 T 19-04-2016 AMED_8455 a6278d0570d44274b78f91d49ac4ce37 272 Pfam PF01061 ABC-2 type transporter 23 229 5.4E-25 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_8455 a6278d0570d44274b78f91d49ac4ce37 272 PANTHER PTHR30294 23 270 5.2E-32 T 19-04-2016 AMED_8455 a6278d0570d44274b78f91d49ac4ce37 272 PIRSF PIRSF006648 13 267 1.5E-28 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6712 1e7ed65f63736e08f47a5989dd482267 1093 Pfam PF00149 Calcineurin-like phosphoesterase 760 917 2.3E-11 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_6712 1e7ed65f63736e08f47a5989dd482267 1093 Gene3D G3DSA:3.60.21.10 759 992 2.2E-24 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6712 1e7ed65f63736e08f47a5989dd482267 1093 Pfam PF09992 Phosphodiester glycosidase 226 396 3.5E-32 T 19-04-2016 IPR018711 Phosphodiester glycosidase AMED_6712 1e7ed65f63736e08f47a5989dd482267 1093 SUPERFAMILY SSF56300 758 995 9.12E-29 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6712 1e7ed65f63736e08f47a5989dd482267 1093 PANTHER PTHR40446:SF1 93 406 1.7E-27 T 19-04-2016 AMED_6712 1e7ed65f63736e08f47a5989dd482267 1093 PANTHER PTHR40446 93 406 1.7E-27 T 19-04-2016 AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 SUPERFAMILY SSF46689 6 77 3.8E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 2.5E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 ProSitePatterns PS01081 TetR-type HTH domain signature. 33 63 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 Gene3D G3DSA:1.10.357.10 6 197 3.3E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 PANTHER PTHR30055 2 209 1.5E-19 T 19-04-2016 AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 2.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1557 a6867b2ecf1b1770ad1e8639b90721a8 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 2.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2115 15559fbbd4d2dc94ae395cb7b6e67d99 154 Pfam PF00578 AhpC/TSA family 5 130 1.7E-39 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_2115 15559fbbd4d2dc94ae395cb7b6e67d99 154 PIRSF PIRSF000239 1 149 2.4E-26 T 19-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 AMED_2115 15559fbbd4d2dc94ae395cb7b6e67d99 154 Gene3D G3DSA:3.40.30.10 2 152 3.9E-49 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2115 15559fbbd4d2dc94ae395cb7b6e67d99 154 PANTHER PTHR10681 3 141 2.1E-49 T 19-04-2016 AMED_2115 15559fbbd4d2dc94ae395cb7b6e67d99 154 SUPERFAMILY SSF52833 1 152 7.6E-49 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 SUPERFAMILY SSF56317 42 304 3.92E-33 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 Pfam PF00795 Carbon-nitrogen hydrolase 70 293 1.8E-14 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 PANTHER PTHR23088 21 103 1.2E-13 T 19-04-2016 AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 PANTHER PTHR23088 122 294 1.2E-13 T 19-04-2016 AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 PANTHER PTHR23088:SF27 21 103 1.2E-13 T 19-04-2016 AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 PANTHER PTHR23088:SF27 122 294 1.2E-13 T 19-04-2016 AMED_5362 176c3226ceb1ca5d2c78af76f66d516f 330 Gene3D G3DSA:3.60.110.10 39 313 3.4E-33 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 PANTHER PTHR24095:SF137 15 435 2.9E-57 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 217 429 2.11E-41 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF47336 461 538 1.07E-7 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 717 946 1.67E-35 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00668 Condensation domain 718 818 1.8E-13 T 19-04-2016 IPR001242 Condensation domain AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00668 Condensation domain 545 695 1.9E-25 T 19-04-2016 IPR001242 Condensation domain AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00668 Condensation domain 12 300 2.8E-44 T 19-04-2016 IPR001242 Condensation domain AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 15 180 6.45E-36 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Gene3D G3DSA:1.10.1200.10 454 531 8.0E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF00550 Phosphopantetheine attachment site 469 508 1.3E-4 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF13745 HxxPF-repeated domain 842 926 1.1E-12 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 Pfam PF13745 HxxPF-repeated domain 324 404 5.2E-12 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 SUPERFAMILY SSF52777 546 702 8.89E-29 T 19-04-2016 AMED_3684 5d096ad57032e3ddda2664ffef9a28f1 953 PANTHER PTHR24095 15 435 2.9E-57 T 19-04-2016 AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 PANTHER PTHR13794 62 309 1.6E-52 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 Gene3D G3DSA:3.20.20.120 88 300 2.4E-52 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 Pfam PF13378 Enolase C-terminal domain-like 79 279 5.5E-36 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 PANTHER PTHR13794:SF8 62 309 1.6E-52 T 19-04-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 SMART SM00922 77 173 1.3E-23 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 1 279 22.129 T 19-04-2016 IPR010196 o-succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 Gene3D G3DSA:3.30.390.10 2 87 6.0E-42 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_8551 8bf144d70aacb941aa9daa6cbb52badc 309 SUPERFAMILY SSF51604 62 279 4.32E-52 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_0569 498a209dc3f28991f33d0ead47d2d535 403 Pfam PF13489 Methyltransferase domain 55 212 5.6E-13 T 19-04-2016 AMED_0569 498a209dc3f28991f33d0ead47d2d535 403 Pfam PF08484 C-methyltransferase C-terminal domain 217 395 8.2E-60 T 19-04-2016 IPR013691 C-methyltransferase KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 AMED_0569 498a209dc3f28991f33d0ead47d2d535 403 Pfam PF08421 Putative zinc binding domain 2 38 9.6E-9 T 19-04-2016 IPR013630 Methyltransferase putative zinc binding domain KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 AMED_0569 498a209dc3f28991f33d0ead47d2d535 403 Gene3D G3DSA:3.40.50.150 59 228 2.7E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0569 498a209dc3f28991f33d0ead47d2d535 403 SUPERFAMILY SSF53335 31 222 2.16E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 80 191 1.5E-19 T 19-04-2016 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 PANTHER PTHR11469 72 298 6.1E-30 T 19-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 330 375 3.7E-11 T 19-04-2016 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 192 300 6.3E-38 T 19-04-2016 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 Gene3D G3DSA:3.40.50.10490 444 526 2.5E-15 T 19-04-2016 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 SUPERFAMILY SSF53697 21 375 4.45E-77 T 19-04-2016 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 87 106 5.8E-7 T 19-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 191 209 5.8E-7 T 19-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 265 286 5.8E-7 T 19-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 Pfam PF00342 Phosphoglucose isomerase 83 287 7.5E-9 T 19-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 AMED_2807 b152d017029cbb3e74d8a52e0e054744 540 PANTHER PTHR11469:SF1 72 298 6.1E-30 T 19-04-2016 AMED_6269 24c5322577432fecfeaf0b87d4924784 854 Pfam PF01841 Transglutaminase-like superfamily 441 556 2.1E-24 T 19-04-2016 IPR002931 Transglutaminase-like AMED_6269 24c5322577432fecfeaf0b87d4924784 854 PANTHER PTHR33490 308 593 3.2E-46 T 19-04-2016 AMED_6269 24c5322577432fecfeaf0b87d4924784 854 Gene3D G3DSA:3.90.260.10 433 564 1.4E-25 T 19-04-2016 IPR002931 Transglutaminase-like AMED_6269 24c5322577432fecfeaf0b87d4924784 854 SMART SM00460 489 558 1.2E-19 T 19-04-2016 IPR002931 Transglutaminase-like AMED_6269 24c5322577432fecfeaf0b87d4924784 854 SUPERFAMILY SSF54001 422 565 7.57E-34 T 19-04-2016 AMED_6269 24c5322577432fecfeaf0b87d4924784 854 PANTHER PTHR33490:SF4 308 593 3.2E-46 T 19-04-2016 AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Pfam PF02515 CoA-transferase family III 1 382 1.0E-91 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Gene3D G3DSA:3.30.1540.10 237 315 1.1E-17 T 19-04-2016 AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Gene3D G3DSA:3.40.50.10540 316 404 8.0E-80 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 Gene3D G3DSA:3.40.50.10540 1 222 8.0E-80 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 PANTHER PTHR24023 1 392 5.4E-25 T 19-04-2016 AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 SUPERFAMILY SSF89796 1 403 2.35E-97 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7174 e61eb6b072b5b61323e6ba9e4aa1c80f 406 PANTHER PTHR24023:SF593 1 392 5.4E-25 T 19-04-2016 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 82 109 2.0E-55 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 349 374 2.0E-55 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 26 52 2.0E-55 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 397 418 2.0E-55 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 PRINTS PR00298 60kDa chaperonin signature 267 290 2.0E-55 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 PANTHER PTHR11353 1 521 1.1E-145 T 19-04-2016 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 521 3.9E-83 T 19-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 523 1.2E-199 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF54849 136 202 3.43E-16 T 19-04-2016 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF48592 408 519 6.58E-68 T 19-04-2016 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF48592 10 137 6.58E-68 T 19-04-2016 AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 SUPERFAMILY SSF52029 186 375 1.03E-60 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 Gene3D G3DSA:1.10.560.10 383 515 1.1E-32 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 Gene3D G3DSA:3.50.7.10 175 375 6.1E-69 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_4331 aca6d536f2bdfa2e566e70b92f3e3718 563 Gene3D G3DSA:1.10.560.10 3 174 9.0E-41 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_4591 909fad81aa2a4eac8db427da76228c23 741 SUPERFAMILY SSF48208 311 735 5.35E-48 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4591 909fad81aa2a4eac8db427da76228c23 741 Gene3D G3DSA:2.70.98.10 27 300 7.6E-82 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_4591 909fad81aa2a4eac8db427da76228c23 741 Pfam PF09137 Glucodextranase, domain N 35 300 1.1E-80 T 19-04-2016 IPR015220 Glucodextranase N KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMED_4591 909fad81aa2a4eac8db427da76228c23 741 Pfam PF00723 Glycosyl hydrolases family 15 435 720 6.4E-14 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_4591 909fad81aa2a4eac8db427da76228c23 741 Gene3D G3DSA:1.50.10.10 317 739 1.5E-97 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_4591 909fad81aa2a4eac8db427da76228c23 741 SUPERFAMILY SSF74650 26 303 9.89E-65 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 113 1.0E-35 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 Pfam PF02261 Aspartate decarboxylase 2 113 1.3E-50 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 2 117 2.7E-46 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 PANTHER PTHR21012 2 133 9.5E-67 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 130 71.77 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 SUPERFAMILY SSF50692 2 119 1.17E-47 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 PANTHER PTHR21012:SF0 2 133 9.5E-67 T 19-04-2016 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 Gene3D G3DSA:2.40.40.20 2 119 3.3E-54 T 19-04-2016 AMED_5033 a4910950ce77eaf1765e48fbb9934e16 137 PIRSF PIRSF006246 1 135 4.2E-51 T 19-04-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 AMED_7558 f07a835770da27da4662c9677d19e271 471 PANTHER PTHR11699 1 469 7.4E-250 T 19-04-2016 AMED_7558 f07a835770da27da4662c9677d19e271 471 PANTHER PTHR11699:SF164 1 469 7.4E-250 T 19-04-2016 AMED_7558 f07a835770da27da4662c9677d19e271 471 Gene3D G3DSA:3.40.605.10 2 243 3.4E-96 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_7558 f07a835770da27da4662c9677d19e271 471 SUPERFAMILY SSF53720 2 462 9.82E-166 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_7558 f07a835770da27da4662c9677d19e271 471 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 229 236 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_7558 f07a835770da27da4662c9677d19e271 471 Gene3D G3DSA:3.40.309.10 244 423 1.5E-68 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_7558 f07a835770da27da4662c9677d19e271 471 Pfam PF00171 Aldehyde dehydrogenase family 2 457 4.4E-175 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_7558 f07a835770da27da4662c9677d19e271 471 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 257 268 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 Pfam PF00795 Carbon-nitrogen hydrolase 5 252 3.5E-30 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 SUPERFAMILY SSF52402 289 552 2.96E-71 T 19-04-2016 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 36 51 - T 19-04-2016 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 SUPERFAMILY SSF56317 1 250 4.32E-61 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 PIRSF PIRSF006630 1 572 1.1E-196 T 19-04-2016 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|UniPathway: UPA00253 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 PANTHER PTHR23090 1 566 3.6E-151 T 19-04-2016 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 TIGRFAM TIGR00552 nadE: NAD+ synthetase 304 550 3.8E-55 T 19-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 Pfam PF02540 NAD synthase 297 544 1.7E-68 T 19-04-2016 IPR022310 NAD/GMP synthase AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 Gene3D G3DSA:3.60.110.10 2 249 4.3E-60 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_1215 496691a0dc85cd340c1dc3ff9d0acb54 573 Gene3D G3DSA:3.40.50.620 287 551 1.0E-73 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5532 1a90c1a764ffa8bf0bca9708d397a48e 179 Gene3D G3DSA:2.80.10.50 45 177 9.8E-27 T 19-04-2016 AMED_5532 1a90c1a764ffa8bf0bca9708d397a48e 179 SUPERFAMILY SSF50370 45 178 1.34E-35 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5532 1a90c1a764ffa8bf0bca9708d397a48e 179 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 79 164 3.3E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_5532 1a90c1a764ffa8bf0bca9708d397a48e 179 SMART SM00458 44 177 2.1E-4 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 Pfam PF04321 RmlD substrate binding domain 6 296 1.4E-101 T 19-04-2016 IPR029903 RmlD-like substrate binding domain AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 Gene3D G3DSA:3.90.25.10 228 282 6.3E-28 T 19-04-2016 AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 PANTHER PTHR10491 6 294 4.6E-75 T 19-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 6 295 7.4E-85 T 19-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 SUPERFAMILY SSF51735 6 295 1.78E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 Gene3D G3DSA:3.40.50.720 6 201 4.1E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1008 33f04b7074f5dfbbffca14456aee5857 301 PANTHER PTHR10491:SF4 6 294 4.6E-75 T 19-04-2016 AMED_5899 1e7c656a3dfecd89a6c57916a529f0cb 207 SUPERFAMILY SSF46689 19 96 2.36E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5899 1e7c656a3dfecd89a6c57916a529f0cb 207 Gene3D G3DSA:1.10.357.10 21 201 1.0E-14 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6719 b5cda677917618ba5f375ecd0ad53472 211 Pfam PF08241 Methyltransferase domain 25 118 1.6E-16 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_6719 b5cda677917618ba5f375ecd0ad53472 211 SUPERFAMILY SSF53335 4 137 1.17E-28 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6719 b5cda677917618ba5f375ecd0ad53472 211 PANTHER PTHR10108 12 119 2.2E-19 T 19-04-2016 AMED_6719 b5cda677917618ba5f375ecd0ad53472 211 Gene3D G3DSA:3.40.50.150 6 131 4.5E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2244 7035d499a6ec7aae94d1fb92f857b586 456 PIRSF PIRSF017804 1 456 3.2E-55 T 19-04-2016 IPR006707 Type VII secretion system membrane protein EccD AMED_2244 7035d499a6ec7aae94d1fb92f857b586 456 TIGRFAM TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD 12 456 6.9E-59 T 19-04-2016 IPR006707 Type VII secretion system membrane protein EccD AMED_2244 7035d499a6ec7aae94d1fb92f857b586 456 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 11 84 4.2E-20 T 19-04-2016 IPR024962 YukD-like AMED_8032 6858e6f91fc8298a6a0f703afad947a8 99 PANTHER PTHR37828 1 97 5.7E-23 T 19-04-2016 AMED_8032 6858e6f91fc8298a6a0f703afad947a8 99 Gene3D G3DSA:3.30.70.1060 5 82 5.3E-4 T 19-04-2016 AMED_8032 6858e6f91fc8298a6a0f703afad947a8 99 PANTHER PTHR37828:SF1 1 97 5.7E-23 T 19-04-2016 AMED_8032 6858e6f91fc8298a6a0f703afad947a8 99 Pfam PF03795 YCII-related domain 1 82 7.1E-10 T 19-04-2016 IPR005545 YCII-related AMED_8032 6858e6f91fc8298a6a0f703afad947a8 99 SUPERFAMILY SSF54909 1 84 4.56E-14 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5786 35a432cbb38da076a634f0a86a7be247 75 Pfam PF10935 Protein of unknown function (DUF2637) 16 65 2.1E-9 T 19-04-2016 IPR021235 Protein of unknown function DUF2637 AMED_4588 a92192a498eaf478fbd2c79f737ddc8d 125 Gene3D G3DSA:3.10.490.10 3 122 3.5E-15 T 19-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like AMED_4588 a92192a498eaf478fbd2c79f737ddc8d 125 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 69 9.8E-7 T 19-04-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like AMED_4588 a92192a498eaf478fbd2c79f737ddc8d 125 SUPERFAMILY SSF110857 3 70 1.96E-9 T 19-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 Gene3D G3DSA:3.50.30.50 6 249 3.4E-44 T 19-04-2016 AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 Pfam PF04199 Putative cyclase 9 175 4.4E-24 T 19-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 PANTHER PTHR31118:SF9 7 175 4.0E-38 T 19-04-2016 AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 PANTHER PTHR31118:SF9 191 250 4.0E-38 T 19-04-2016 AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 PANTHER PTHR31118 7 175 4.0E-38 T 19-04-2016 AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 PANTHER PTHR31118 191 250 4.0E-38 T 19-04-2016 AMED_3640 b547e6e8b5b9d2eb4a7eb2d9d41c58d0 250 SUPERFAMILY SSF102198 5 247 1.57E-40 T 19-04-2016 AMED_5834 df1da82ed10350957754f1290882d7eb 269 SUPERFAMILY SSF55136 120 268 5.41E-15 T 19-04-2016 IPR011256 Regulatory factor, effector binding domain AMED_5834 df1da82ed10350957754f1290882d7eb 269 SMART SM00871 119 269 8.1E-8 T 19-04-2016 IPR010499 Bacterial transcription activator, effector binding AMED_5834 df1da82ed10350957754f1290882d7eb 269 Gene3D G3DSA:3.20.80.10 123 268 8.4E-6 T 19-04-2016 IPR011256 Regulatory factor, effector binding domain AMED_5834 df1da82ed10350957754f1290882d7eb 269 Pfam PF06445 GyrI-like small molecule binding domain 120 267 7.0E-10 T 19-04-2016 IPR029442 GyrI-like small molecule binding domain AMED_5834 df1da82ed10350957754f1290882d7eb 269 PANTHER PTHR30204 2 268 1.0E-36 T 19-04-2016 AMED_5834 df1da82ed10350957754f1290882d7eb 269 Pfam PF13411 MerR HTH family regulatory protein 2 70 3.5E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_5834 df1da82ed10350957754f1290882d7eb 269 Gene3D G3DSA:1.10.1660.10 58 112 2.1E-7 T 19-04-2016 AMED_5834 df1da82ed10350957754f1290882d7eb 269 PANTHER PTHR30204:SF22 2 268 1.0E-36 T 19-04-2016 AMED_5834 df1da82ed10350957754f1290882d7eb 269 SUPERFAMILY SSF46955 2 104 4.76E-24 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_5834 df1da82ed10350957754f1290882d7eb 269 SMART SM00422 2 72 4.9E-17 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_5834 df1da82ed10350957754f1290882d7eb 269 Gene3D G3DSA:1.10.1660.10 2 57 1.4E-21 T 19-04-2016 AMED_0883 68528291bb6dbbd5ef60544e49cf2ab3 212 Pfam PF08044 Domain of unknown function (DUF1707) 9 61 2.1E-23 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_0883 68528291bb6dbbd5ef60544e49cf2ab3 212 PANTHER PTHR40763:SF1 7 202 1.3E-59 T 19-04-2016 AMED_0883 68528291bb6dbbd5ef60544e49cf2ab3 212 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 110 170 4.0E-8 T 19-04-2016 IPR024425 Cell wall-active antibiotics response 4TMS YvqF AMED_0883 68528291bb6dbbd5ef60544e49cf2ab3 212 PANTHER PTHR40763 7 202 1.3E-59 T 19-04-2016 AMED_7865 ccbbc17e1ae875c2d683796b8150766f 88 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 25 85 2.9E-11 T 19-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 AMED_7865 ccbbc17e1ae875c2d683796b8150766f 88 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 8 85 1.7E-22 T 19-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 AMED_4946 f1fd69f07217498b56b81f8261c20952 140 SUPERFAMILY SSF54637 9 138 2.07E-36 T 19-04-2016 IPR029069 HotDog domain AMED_4946 f1fd69f07217498b56b81f8261c20952 140 PANTHER PTHR31793:SF9 10 138 5.8E-27 T 19-04-2016 AMED_4946 f1fd69f07217498b56b81f8261c20952 140 Gene3D G3DSA:3.10.129.10 8 139 1.9E-35 T 19-04-2016 IPR029069 HotDog domain AMED_4946 f1fd69f07217498b56b81f8261c20952 140 PANTHER PTHR31793 10 138 5.8E-27 T 19-04-2016 AMED_4946 f1fd69f07217498b56b81f8261c20952 140 PIRSF PIRSF003230 3 140 3.6E-25 T 19-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMED_4946 f1fd69f07217498b56b81f8261c20952 140 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 12 123 1.0E-22 T 19-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMED_4946 f1fd69f07217498b56b81f8261c20952 140 Pfam PF03061 Thioesterase superfamily 23 107 6.8E-14 T 19-04-2016 IPR006683 Thioesterase domain AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 PANTHER PTHR21091:SF127 1 180 1.1E-46 T 19-04-2016 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 19-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 258 495 4.3E-85 T 19-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.40.1010.10 1 134 1.4E-35 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 101 133 - T 19-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 SUPERFAMILY SSF53790 1 236 1.57E-46 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 234 4.6E-62 T 19-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 PANTHER PTHR21091 1 180 1.1E-46 T 19-04-2016 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.40.1010.10 256 369 4.3E-28 T 19-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 SUPERFAMILY SSF53790 255 495 3.14E-53 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Gene3D G3DSA:3.30.950.10 370 480 3.8E-12 T 19-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 258 465 2.6E-38 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_7061 8ef5f0958bc8b0cdc4ff81122a971d2d 495 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 216 1.0E-45 T 19-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.0E-11 T 19-04-2016 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 112 133 1.0E-11 T 19-04-2016 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 90 110 1.0E-11 T 19-04-2016 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.0E-11 T 19-04-2016 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 PANTHER PTHR11751:SF301 9 387 1.7E-134 T 19-04-2016 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 SUPERFAMILY SSF53383 7 387 6.45E-106 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 Pfam PF00155 Aminotransferase class I and II 30 384 2.1E-66 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 Gene3D G3DSA:3.90.1150.10 255 388 5.2E-25 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 PANTHER PTHR11751 9 387 1.7E-134 T 19-04-2016 AMED_0419 72a5ce71e81b63a7656b71a78b90f75d 388 Gene3D G3DSA:3.40.640.10 44 254 2.1E-74 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2118 e69beddb034bc663601846e8c79a0327 345 Gene3D G3DSA:3.40.50.150 11 163 3.8E-64 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2118 e69beddb034bc663601846e8c79a0327 345 Gene3D G3DSA:3.40.50.150 218 256 3.8E-64 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2118 e69beddb034bc663601846e8c79a0327 345 Gene3D G3DSA:3.40.50.150 294 340 3.8E-64 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2118 e69beddb034bc663601846e8c79a0327 345 Pfam PF01555 DNA methylase 29 331 3.5E-40 T 19-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 28 42 3.4E-28 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 292 310 3.4E-28 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 66 86 3.4E-28 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 236 253 3.4E-28 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 315 335 3.4E-28 T 19-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PANTHER PTHR13370:SF4 218 249 2.7E-12 T 19-04-2016 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PANTHER PTHR13370:SF4 1 202 2.7E-12 T 19-04-2016 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PANTHER PTHR13370:SF4 286 336 2.7E-12 T 19-04-2016 AMED_2118 e69beddb034bc663601846e8c79a0327 345 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 33 38 - T 19-04-2016 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PANTHER PTHR13370 218 249 2.7E-12 T 19-04-2016 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PANTHER PTHR13370 1 202 2.7E-12 T 19-04-2016 AMED_2118 e69beddb034bc663601846e8c79a0327 345 PANTHER PTHR13370 286 336 2.7E-12 T 19-04-2016 AMED_2118 e69beddb034bc663601846e8c79a0327 345 SUPERFAMILY SSF53335 12 184 6.22E-47 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2118 e69beddb034bc663601846e8c79a0327 345 SUPERFAMILY SSF53335 215 256 6.22E-47 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2118 e69beddb034bc663601846e8c79a0327 345 SUPERFAMILY SSF53335 294 337 6.22E-47 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4633 620500a6d18be07bb0734b90a089fc93 337 SUPERFAMILY SSF101898 114 329 1.41E-14 T 19-04-2016 AMED_4633 620500a6d18be07bb0734b90a089fc93 337 SUPERFAMILY SSF101898 63 82 1.41E-14 T 19-04-2016 AMED_4633 620500a6d18be07bb0734b90a089fc93 337 Gene3D G3DSA:2.130.10.10 53 82 6.4E-15 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_4633 620500a6d18be07bb0734b90a089fc93 337 Gene3D G3DSA:2.130.10.10 124 327 6.4E-15 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_6656 4689974d868c56d4723570e6af012246 562 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 468 484 - T 19-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF56014 415 557 2.88E-35 T 19-04-2016 AMED_6656 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF55124 18 168 5.89E-37 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF55124 299 430 1.25E-18 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 PRINTS PR00397 Sirohaem Fe-binding site signature 468 486 1.0E-9 T 19-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 PRINTS PR00397 Sirohaem Fe-binding site signature 419 437 1.0E-9 T 19-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 419 555 1.2E-8 T 19-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 169 321 1.3E-38 T 19-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.30.413.10 416 559 1.8E-34 T 19-04-2016 AMED_6656 4689974d868c56d4723570e6af012246 562 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 342 407 9.0E-14 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 98 159 2.4E-18 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 PANTHER PTHR32439:SF0 19 562 1.8E-180 T 19-04-2016 AMED_6656 4689974d868c56d4723570e6af012246 562 SUPERFAMILY SSF56014 169 324 4.71E-45 T 19-04-2016 AMED_6656 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.90.480.10 98 166 5.9E-47 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.90.480.10 335 412 5.9E-47 T 19-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 AMED_6656 4689974d868c56d4723570e6af012246 562 Gene3D G3DSA:3.30.413.10 169 318 1.6E-40 T 19-04-2016 AMED_6656 4689974d868c56d4723570e6af012246 562 PANTHER PTHR32439 19 562 1.8E-180 T 19-04-2016 AMED_6571 4491aca29c6cf032d1d56bac81c25993 132 Pfam PF07498 Rho termination factor, N-terminal domain 95 122 2.9E-6 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMED_6571 4491aca29c6cf032d1d56bac81c25993 132 Pfam PF06150 ChaB 7 61 2.0E-17 T 19-04-2016 IPR009317 ChaB AMED_6571 4491aca29c6cf032d1d56bac81c25993 132 SUPERFAMILY SSF140376 3 62 1.44E-14 T 19-04-2016 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 SMART SM00448 1 120 2.4E-6 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 SUPERFAMILY SSF52172 2 153 1.11E-18 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.4E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.4E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.4E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 195 1.0E-10 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 Pfam PF00072 Response regulator receiver domain 3 100 2.9E-13 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 SMART SM00421 148 207 3.6E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 PANTHER PTHR26402 1 209 1.8E-95 T 19-04-2016 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 SUPERFAMILY SSF46894 132 196 5.1E-14 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 Gene3D G3DSA:1.10.10.10 149 213 5.5E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 Gene3D G3DSA:3.40.50.2300 2 148 1.0E-25 T 19-04-2016 AMED_0471 061555c70bde815e6bb72ab71efae0ae 223 PANTHER PTHR26402:SF582 1 209 1.8E-95 T 19-04-2016 AMED_2163 9176c1a5b4ea5fb2208486dfa209fc9c 311 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 2 231 9.5E-95 T 19-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c AMED_2163 9176c1a5b4ea5fb2208486dfa209fc9c 311 Gene3D G3DSA:3.20.20.30 8 310 4.8E-81 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2163 9176c1a5b4ea5fb2208486dfa209fc9c 311 PANTHER PTHR30011 4 275 4.1E-75 T 19-04-2016 AMED_2163 9176c1a5b4ea5fb2208486dfa209fc9c 311 SUPERFAMILY SSF51679 9 310 2.88E-73 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2163 9176c1a5b4ea5fb2208486dfa209fc9c 311 PANTHER PTHR30011:SF5 4 275 4.1E-75 T 19-04-2016 AMED_2163 9176c1a5b4ea5fb2208486dfa209fc9c 311 Pfam PF00296 Luciferase-like monooxygenase 8 248 9.7E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8854 078b0609e29436e702ca90f43283f186 576 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 13 36 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8854 078b0609e29436e702ca90f43283f186 576 Gene3D G3DSA:1.10.510.10 72 257 2.5E-40 T 19-04-2016 AMED_8854 078b0609e29436e702ca90f43283f186 576 SUPERFAMILY SSF56112 4 319 9.85E-69 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8854 078b0609e29436e702ca90f43283f186 576 Pfam PF00069 Protein kinase domain 7 215 1.8E-42 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8854 078b0609e29436e702ca90f43283f186 576 Gene3D G3DSA:3.30.200.20 5 71 2.6E-19 T 19-04-2016 AMED_8854 078b0609e29436e702ca90f43283f186 576 SMART SM00220 7 264 4.6E-53 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8854 078b0609e29436e702ca90f43283f186 576 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 125 137 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8854 078b0609e29436e702ca90f43283f186 576 PANTHER PTHR24362 3 343 1.0E-95 T 19-04-2016 AMED_8854 078b0609e29436e702ca90f43283f186 576 PANTHER PTHR24362:SF160 3 343 1.0E-95 T 19-04-2016 AMED_5014 feeaa18ca180c63cb3bb9f570ec61d5f 341 PANTHER PTHR30011:SF4 18 326 7.9E-120 T 19-04-2016 AMED_5014 feeaa18ca180c63cb3bb9f570ec61d5f 341 PANTHER PTHR30011 18 326 7.9E-120 T 19-04-2016 AMED_5014 feeaa18ca180c63cb3bb9f570ec61d5f 341 SUPERFAMILY SSF51679 2 328 7.59E-66 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5014 feeaa18ca180c63cb3bb9f570ec61d5f 341 Pfam PF00296 Luciferase-like monooxygenase 18 322 3.4E-74 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5014 feeaa18ca180c63cb3bb9f570ec61d5f 341 TIGRFAM TIGR03559 F420_Rv3520c: probable F420-dependent oxidoreductase, Rv3520c family 2 326 8.3E-145 T 19-04-2016 IPR019951 F420-dependent oxidoreductase-predicted, Rv3520c KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- AMED_5014 feeaa18ca180c63cb3bb9f570ec61d5f 341 Gene3D G3DSA:3.20.20.30 2 332 4.3E-74 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0194 b234aadd79d4600434fdd57f261c2cc7 333 Pfam PF12079 Protein of unknown function (DUF3558) 174 323 4.4E-11 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_0194 b234aadd79d4600434fdd57f261c2cc7 333 Pfam PF12079 Protein of unknown function (DUF3558) 16 166 4.4E-9 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 Gene3D G3DSA:3.40.50.2300 9 126 3.1E-22 T 19-04-2016 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 Pfam PF00072 Response regulator receiver domain 12 121 3.8E-14 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 3.8E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 3.8E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 3.8E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 Gene3D G3DSA:1.10.10.10 127 214 1.9E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 SUPERFAMILY SSF46894 151 214 6.46E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 PANTHER PTHR26402:SF151 10 214 1.8E-45 T 19-04-2016 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 PANTHER PTHR26402 10 214 1.8E-45 T 19-04-2016 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 4.1E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 SMART SM00448 10 121 7.2E-13 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 SUPERFAMILY SSF52172 9 136 1.31E-21 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5164 e95940c43297bdb0919a6b8a665d4946 215 SMART SM00421 151 208 2.1E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 PANTHER PTHR24220:SF358 675 905 3.6E-92 T 19-04-2016 AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 Gene3D G3DSA:3.40.50.300 670 902 9.1E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 SMART SM00382 698 881 3.1E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 SUPERFAMILY SSF52540 672 903 3.22E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 297 6.6E-22 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF02653 Branched-chain amino acid transport system / permease component 350 621 6.2E-26 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF00005 ABC transporter 690 833 7.2E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 882 904 3.9E-6 T 19-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMED_7155 3b3f32097a5dce7c56d2933da899f737 914 PANTHER PTHR24220 675 905 3.6E-92 T 19-04-2016 AMED_3411 e3589974ade7a7a394c120c6230a1c71 361 Pfam PF00652 Ricin-type beta-trefoil lectin domain 34 140 1.1E-12 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3411 e3589974ade7a7a394c120c6230a1c71 361 SUPERFAMILY SSF55486 187 346 2.3E-6 T 19-04-2016 AMED_3411 e3589974ade7a7a394c120c6230a1c71 361 SUPERFAMILY SSF50370 33 153 1.2E-22 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3411 e3589974ade7a7a394c120c6230a1c71 361 SMART SM00458 32 156 1.9E-5 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3411 e3589974ade7a7a394c120c6230a1c71 361 Gene3D G3DSA:3.40.390.10 283 345 1.7E-4 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_3411 e3589974ade7a7a394c120c6230a1c71 361 Gene3D G3DSA:2.80.10.50 33 138 5.9E-19 T 19-04-2016 AMED_6443 2190a3a53ea36296da064678c0743f68 195 Gene3D G3DSA:3.40.50.720 8 85 2.6E-4 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6443 2190a3a53ea36296da064678c0743f68 195 Pfam PF00196 Bacterial regulatory proteins, luxR family 124 179 6.3E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6443 2190a3a53ea36296da064678c0743f68 195 PANTHER PTHR26402:SF151 63 185 5.1E-30 T 19-04-2016 AMED_6443 2190a3a53ea36296da064678c0743f68 195 ProSitePatterns PS00622 LuxR-type HTH domain signature. 139 166 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6443 2190a3a53ea36296da064678c0743f68 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 167 9.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6443 2190a3a53ea36296da064678c0743f68 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 125 139 9.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6443 2190a3a53ea36296da064678c0743f68 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 155 9.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6443 2190a3a53ea36296da064678c0743f68 195 Gene3D G3DSA:1.10.10.10 86 183 1.9E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6443 2190a3a53ea36296da064678c0743f68 195 SMART SM00421 122 179 1.4E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6443 2190a3a53ea36296da064678c0743f68 195 PANTHER PTHR26402 63 185 5.1E-30 T 19-04-2016 AMED_6443 2190a3a53ea36296da064678c0743f68 195 SUPERFAMILY SSF46894 117 184 1.97E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1259 54f9209d42e666865e915f842cfebb1a 377 PANTHER PTHR24421:SF19 16 375 1.1E-73 T 19-04-2016 AMED_1259 54f9209d42e666865e915f842cfebb1a 377 Gene3D G3DSA:3.30.565.10 285 375 9.3E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1259 54f9209d42e666865e915f842cfebb1a 377 Gene3D G3DSA:3.30.565.10 224 244 9.3E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1259 54f9209d42e666865e915f842cfebb1a 377 Pfam PF07730 Histidine kinase 187 253 4.4E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_1259 54f9209d42e666865e915f842cfebb1a 377 Pfam PF13796 Putative sensor 20 133 1.4E-22 T 19-04-2016 IPR025828 Putative sensor domain AMED_1259 54f9209d42e666865e915f842cfebb1a 377 PANTHER PTHR24421 16 375 1.1E-73 T 19-04-2016 AMED_1259 54f9209d42e666865e915f842cfebb1a 377 SUPERFAMILY SSF55874 265 374 4.02E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 PANTHER PTHR10909:SF10 1 397 3.8E-151 T 19-04-2016 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 SUPERFAMILY SSF56645 9 251 8.51E-72 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 Gene3D G3DSA:1.20.140.10 229 396 5.8E-58 T 19-04-2016 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 PANTHER PTHR10909 1 397 3.8E-151 T 19-04-2016 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 228 5.6E-21 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 Gene3D G3DSA:2.40.110.10 126 228 2.2E-31 T 19-04-2016 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 122 2.3E-35 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 390 2.6E-46 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 Gene3D G3DSA:1.10.540.10 9 123 7.0E-41 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_1078 37a0ddd4b22126d614558f258d5c3cf6 398 SUPERFAMILY SSF47203 241 395 1.21E-53 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3633 79756e351694f399e5fd73900cad99a9 285 PANTHER PTHR24220 8 236 4.6E-79 T 19-04-2016 AMED_3633 79756e351694f399e5fd73900cad99a9 285 SMART SM00382 31 220 8.5E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3633 79756e351694f399e5fd73900cad99a9 285 PANTHER PTHR24220:SF414 8 236 4.6E-79 T 19-04-2016 AMED_3633 79756e351694f399e5fd73900cad99a9 285 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3633 79756e351694f399e5fd73900cad99a9 285 Pfam PF00005 ABC transporter 25 163 2.3E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3633 79756e351694f399e5fd73900cad99a9 285 Gene3D G3DSA:3.40.50.300 3 230 2.7E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3633 79756e351694f399e5fd73900cad99a9 285 SUPERFAMILY SSF52540 3 222 4.71E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0785 da449963bbca8392370d4779e0a7e4eb 65 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 1 63 1.0E-13 T 19-04-2016 AMED_0785 da449963bbca8392370d4779e0a7e4eb 65 SUPERFAMILY SSF51735 1 63 5.98E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0785 da449963bbca8392370d4779e0a7e4eb 65 Gene3D G3DSA:3.40.50.720 1 63 7.2E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 206 223 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 25 46 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 226 252 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 1 20 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 307 331 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 342 352 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00463 E-class P450 group I signature 352 375 1.3E-26 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 352 363 3.5E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 269 280 3.5E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 343 352 3.5E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PRINTS PR00385 P450 superfamily signature 217 234 3.5E-12 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 SUPERFAMILY SSF48264 4 403 3.54E-99 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 Gene3D G3DSA:1.10.630.10 4 403 1.5E-105 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PANTHER PTHR24291:SF46 4 391 2.4E-93 T 19-04-2016 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 PANTHER PTHR24291 4 391 2.4E-93 T 19-04-2016 AMED_8280 c7ab146f7a079cbbf86391b2d93246e3 403 Pfam PF00067 Cytochrome P450 4 369 6.2E-78 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 PANTHER PTHR32305 529 1314 3.4E-62 T 19-04-2016 AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 PANTHER PTHR32305:SF6 529 1314 3.4E-62 T 19-04-2016 AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 1120 1149 3.9E-7 T 19-04-2016 IPR031325 RHS repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 857 893 2.8E-6 T 19-04-2016 IPR031325 RHS repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 879 912 5.8E-5 T 19-04-2016 IPR031325 RHS repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 Pfam PF05593 RHS Repeat 820 852 1.6E-8 T 19-04-2016 IPR031325 RHS repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 PRINTS PR00394 RHS protein signature 1280 1299 5.9E-8 T 19-04-2016 IPR001826 RHS protein AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 PRINTS PR00394 RHS protein signature 1257 1277 5.9E-8 T 19-04-2016 IPR001826 RHS protein AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 978 1016 0.0011 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 898 936 6.3E-5 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1120 1154 2.4E-7 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 755 793 0.0012 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 817 855 4.3E-9 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 552 581 0.0014 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 857 892 1.7E-5 T 19-04-2016 IPR006530 YD repeat AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1242 1312 2.9E-20 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_5454 5c7f60cf7ff9ecf9498b48a751656e99 1605 SUPERFAMILY SSF140453 58 120 3.66E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 PANTHER PTHR10120 261 281 5.4E-91 T 19-04-2016 AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 PANTHER PTHR10120 6 245 5.4E-91 T 19-04-2016 AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 PANTHER PTHR10120:SF19 261 281 5.4E-91 T 19-04-2016 AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 PANTHER PTHR10120:SF19 6 245 5.4E-91 T 19-04-2016 AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 Gene3D G3DSA:3.30.2010.10 59 149 2.6E-30 T 19-04-2016 AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 Pfam PF01435 Peptidase family M48 68 278 6.2E-36 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_0573 0cd1752578fb4b5e963dee04bd28f283 283 Hamap MF_00188 Protease HtpX [htpX]. 7 278 26.929 T 19-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 Gene3D G3DSA:3.90.180.10 1 150 4.7E-42 T 19-04-2016 IPR011032 GroES-like AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 PANTHER PTHR11695:SF509 15 309 1.1E-71 T 19-04-2016 AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 SUPERFAMILY SSF51735 117 278 2.59E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 SMART SM00829 10 307 7.4E-14 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 PANTHER PTHR11695 15 309 1.1E-71 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 SUPERFAMILY SSF50129 1 149 1.83E-37 T 19-04-2016 IPR011032 GroES-like AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 89 6.7E-7 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 Gene3D G3DSA:3.40.50.720 151 241 4.1E-16 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3708 e40325a6cac5e24a987bfc839bd4b9f6 312 Pfam PF13602 Zinc-binding dehydrogenase 187 307 1.2E-18 T 19-04-2016 AMED_0337 a9fe15afd8833a54d91bc03fdbdf2983 137 Gene3D G3DSA:3.10.129.10 3 135 9.5E-44 T 19-04-2016 IPR029069 HotDog domain AMED_0337 a9fe15afd8833a54d91bc03fdbdf2983 137 PANTHER PTHR31793 2 135 1.3E-53 T 19-04-2016 AMED_0337 a9fe15afd8833a54d91bc03fdbdf2983 137 SUPERFAMILY SSF54637 3 135 7.28E-35 T 19-04-2016 IPR029069 HotDog domain AMED_0337 a9fe15afd8833a54d91bc03fdbdf2983 137 Pfam PF13279 Thioesterase-like superfamily 14 129 7.1E-11 T 19-04-2016 AMED_0337 a9fe15afd8833a54d91bc03fdbdf2983 137 PANTHER PTHR31793:SF7 2 135 1.3E-53 T 19-04-2016 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 SUPERFAMILY SSF52242 557 717 2.35E-58 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 382 407 - T 19-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 Gene3D G3DSA:3.40.50.280 558 718 2.0E-72 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 Gene3D G3DSA:3.20.20.240 39 505 1.1E-208 T 19-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 Pfam PF02310 B12 binding domain 594 706 9.2E-15 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 Pfam PF01642 Methylmalonyl-CoA mutase 40 552 1.1E-233 T 19-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 591 719 3.8E-62 T 19-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 SUPERFAMILY SSF51703 19 554 2.41E-220 T 19-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 39 559 2.5E-278 T 19-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 PANTHER PTHR23408 35 698 0.0 T 19-04-2016 AMED_0914 16c81c78d3584eaed5ac70474ddff000 722 PANTHER PTHR23408:SF1 35 698 0.0 T 19-04-2016 AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SUPERFAMILY SSF46785 19 89 1.4E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SUPERFAMILY SSF48008 90 225 1.26E-28 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SMART SM00345 27 85 6.9E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Pfam PF07729 FCD domain 95 215 3.5E-16 T 19-04-2016 IPR011711 GntR, C-terminal AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 PANTHER PTHR11751:SF3 18 111 1.9E-23 T 19-04-2016 AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 SMART SM00895 95 217 8.2E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Gene3D G3DSA:1.20.120.530 88 228 1.6E-36 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 85 1.5E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 PANTHER PTHR11751 18 111 1.9E-23 T 19-04-2016 AMED_8381 8b2be7f7a7f6cdca48a0e2d07be2c79d 240 Gene3D G3DSA:1.10.10.10 17 86 1.3E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4798 aaa8863e8b472570b40d936165e3abff 464 PIRSF PIRSF001495 27 452 8.4E-106 T 19-04-2016 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728|UniPathway: UPA00561 AMED_4798 aaa8863e8b472570b40d936165e3abff 464 SUPERFAMILY SSF51703 32 429 7.46E-116 T 19-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 AMED_4798 aaa8863e8b472570b40d936165e3abff 464 Gene3D G3DSA:3.20.20.240 33 392 7.1E-126 T 19-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 AMED_4798 aaa8863e8b472570b40d936165e3abff 464 Pfam PF06368 Methylaspartate mutase E chain (MutE) 37 424 1.6E-103 T 19-04-2016 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728|UniPathway: UPA00561 AMED_4798 aaa8863e8b472570b40d936165e3abff 464 Gene3D G3DSA:3.90.970.10 395 428 1.3E-5 T 19-04-2016 IPR014714 Glutamate mutase E subunit, C-terminal domain GO:0016866|GO:0019670|GO:0031419 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728|UniPathway: UPA00561 AMED_8672 8f1f1477f56a3236b5d0228fbf1a9abd 190 SUPERFAMILY SSF46785 12 106 1.25E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8672 8f1f1477f56a3236b5d0228fbf1a9abd 190 SMART SM00418 13 90 8.1E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_8672 8f1f1477f56a3236b5d0228fbf1a9abd 190 Pfam PF12840 Helix-turn-helix domain 13 69 3.4E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8672 8f1f1477f56a3236b5d0228fbf1a9abd 190 Gene3D G3DSA:1.10.10.10 8 83 4.6E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 Gene3D G3DSA:1.25.40.10 556 701 2.4E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 Pfam PF00069 Protein kinase domain 218 499 1.4E-38 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 SMART SM00220 218 506 2.4E-50 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 363 375 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 Gene3D G3DSA:1.10.510.10 338 502 9.7E-41 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 224 247 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 SUPERFAMILY SSF48452 558 693 2.4E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 Gene3D G3DSA:3.30.200.20 210 318 1.2E-18 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 PANTHER PTHR24362 275 548 1.8E-83 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 PANTHER PTHR24362 200 258 1.8E-83 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 PANTHER PTHR24362 712 741 1.8E-83 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 SUPERFAMILY SSF56112 209 504 6.47E-63 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 PANTHER PTHR24362:SF160 275 548 1.8E-83 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 PANTHER PTHR24362:SF160 200 258 1.8E-83 T 19-04-2016 AMED_8299 0825adcdf03f03c37c39892c0d31be5e 741 PANTHER PTHR24362:SF160 712 741 1.8E-83 T 19-04-2016 AMED_5699 d77c967a0b6954d9d2ff9b85e06273d2 126 SUPERFAMILY SSF54427 3 117 1.63E-21 T 19-04-2016 IPR032710 NTF2-like domain AMED_5699 d77c967a0b6954d9d2ff9b85e06273d2 126 Gene3D G3DSA:3.10.450.50 4 116 1.3E-19 T 19-04-2016 IPR032710 NTF2-like domain AMED_5699 d77c967a0b6954d9d2ff9b85e06273d2 126 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 5 75 1.1E-9 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_5699 d77c967a0b6954d9d2ff9b85e06273d2 126 Pfam PF12680 SnoaL-like domain 7 108 3.9E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_8718 e499b5a00c1cd17926acefa25cec892d 338 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 130 328 7.5E-18 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_8718 e499b5a00c1cd17926acefa25cec892d 338 SUPERFAMILY SSF56219 122 337 1.96E-25 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_8718 e499b5a00c1cd17926acefa25cec892d 338 Gene3D G3DSA:3.60.10.10 121 335 5.7E-4 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_6930 dd7fd6561aca925de7ace6fc681899b2 333 Gene3D G3DSA:3.40.50.720 2 243 7.1E-15 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6930 dd7fd6561aca925de7ace6fc681899b2 333 SUPERFAMILY SSF51735 280 328 1.91E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6930 dd7fd6561aca925de7ace6fc681899b2 333 SUPERFAMILY SSF51735 3 242 1.91E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6930 dd7fd6561aca925de7ace6fc681899b2 333 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 110 6.0E-6 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_6930 dd7fd6561aca925de7ace6fc681899b2 333 PANTHER PTHR32487:SF0 2 333 6.6E-101 T 19-04-2016 AMED_6930 dd7fd6561aca925de7ace6fc681899b2 333 PANTHER PTHR32487 2 333 6.6E-101 T 19-04-2016 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 PANTHER PTHR30328:SF3 2 194 2.4E-41 T 19-04-2016 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.8E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.8E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 Gene3D G3DSA:1.10.357.10 2 189 5.8E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 5.8E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 PANTHER PTHR30328 2 194 2.4E-41 T 19-04-2016 AMED_5136 41d206c072f8a38e8e7b3ff02885424b 196 SUPERFAMILY SSF46689 2 85 5.13E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5538 0af3ea13e9cd40135ac50010c593836e 167 PANTHER PTHR35176:SF4 9 165 6.4E-19 T 19-04-2016 AMED_5538 0af3ea13e9cd40135ac50010c593836e 167 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 100 8.6E-9 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_5538 0af3ea13e9cd40135ac50010c593836e 167 Gene3D G3DSA:2.30.110.10 18 166 1.1E-34 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5538 0af3ea13e9cd40135ac50010c593836e 167 SUPERFAMILY SSF50475 18 164 4.86E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5538 0af3ea13e9cd40135ac50010c593836e 167 PANTHER PTHR35176 9 165 6.4E-19 T 19-04-2016 AMED_5185 2eda3b1a67c432ccc19a7c3be81a5682 392 SMART SM00637 33 131 4.9E-45 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5185 2eda3b1a67c432ccc19a7c3be81a5682 392 Gene3D G3DSA:2.60.40.290 32 131 4.2E-35 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5185 2eda3b1a67c432ccc19a7c3be81a5682 392 Pfam PF00553 Cellulose binding domain 33 131 1.9E-29 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5185 2eda3b1a67c432ccc19a7c3be81a5682 392 ProSitePatterns PS00561 CBM2a (carbohydrate-binding type-2) domain signature. 78 91 - T 19-04-2016 IPR018366 Carbohydrate-binding type-2, conserved site GO:0004553|GO:0005975|GO:0030246 AMED_5185 2eda3b1a67c432ccc19a7c3be81a5682 392 SUPERFAMILY SSF49384 29 131 1.67E-29 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 Gene3D G3DSA:3.40.190.10 177 255 2.3E-18 T 19-04-2016 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.4E-22 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 Pfam PF03466 LysR substrate binding domain 88 263 2.7E-35 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 Gene3D G3DSA:3.40.190.10 91 176 8.1E-19 T 19-04-2016 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 Gene3D G3DSA:1.10.10.10 2 86 6.0E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.6E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.6E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.6E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 PANTHER PTHR30346 1 242 4.0E-62 T 19-04-2016 AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 SUPERFAMILY SSF46785 2 111 4.15E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7664 b22206374cf5b973c0d7c475a544f49b 304 SUPERFAMILY SSF53850 91 268 4.02E-32 T 19-04-2016 AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 PANTHER PTHR10992 5 249 4.3E-46 T 19-04-2016 AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 SUPERFAMILY SSF53474 5 246 4.09E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 Gene3D G3DSA:3.40.50.1820 5 246 8.7E-60 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 193 207 4.2E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 4.2E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 29 44 4.2E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 75 88 4.2E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7731 0cb4eb519e8df6b5a9713591a5a32daa 255 Pfam PF12697 Alpha/beta hydrolase family 6 242 4.2E-25 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8806 d1f7ec63c3f2089ea4776843a7e68ce3 355 Gene3D G3DSA:3.40.50.300 115 346 6.5E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8806 d1f7ec63c3f2089ea4776843a7e68ce3 355 PANTHER PTHR13696:SF64 60 348 6.1E-29 T 19-04-2016 AMED_8806 d1f7ec63c3f2089ea4776843a7e68ce3 355 TIGRFAM TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein 10 344 3.8E-83 T 19-04-2016 IPR022521 Conserved hypothetical protein CHP03815, CpaE-like AMED_8806 d1f7ec63c3f2089ea4776843a7e68ce3 355 SUPERFAMILY SSF52540 119 324 3.99E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8806 d1f7ec63c3f2089ea4776843a7e68ce3 355 PANTHER PTHR13696 60 348 6.1E-29 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Pfam PF00501 AMP-binding enzyme 28 442 4.4E-114 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Gene3D G3DSA:3.40.50.980 23 205 2.1E-41 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 527 9.6E-18 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Gene3D G3DSA:3.30.300.30 439 538 2.2E-32 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 PANTHER PTHR24095 8 536 1.0E-204 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Gene3D G3DSA:2.30.38.10 359 433 4.9E-28 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 Gene3D G3DSA:3.40.50.980 206 351 2.8E-53 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 SUPERFAMILY SSF56801 21 537 5.63E-167 T 19-04-2016 AMED_8494 61c4267454a7aeb9b9dc4ef2f0bd3825 552 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.4E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 248 4.5E-56 T 19-04-2016 AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PANTHER PTHR24321:SF6 1 249 2.0E-45 T 19-04-2016 AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PANTHER PTHR24321 1 249 2.0E-45 T 19-04-2016 AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 176 1.4E-4 T 19-04-2016 AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 Gene3D G3DSA:3.40.50.720 1 248 9.9E-73 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 SUPERFAMILY SSF51735 4 248 2.76E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.0E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.0E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.0E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.0E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.0E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7337 a36a0ec7c59b1f21843b2709e9a5d8cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.0E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4915 d481c5e70f5966464120aeb5080c1d1c 87 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 1 87 17.364 T 19-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 AMED_4915 d481c5e70f5966464120aeb5080c1d1c 87 SUPERFAMILY SSF101386 2 87 2.18E-20 T 19-04-2016 AMED_4915 d481c5e70f5966464120aeb5080c1d1c 87 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 12 85 4.2E-5 T 19-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 AMED_4915 d481c5e70f5966464120aeb5080c1d1c 87 PANTHER PTHR21256:SF15 2 87 1.8E-19 T 19-04-2016 AMED_4915 d481c5e70f5966464120aeb5080c1d1c 87 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 87 4.9E-21 T 19-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 AMED_4915 d481c5e70f5966464120aeb5080c1d1c 87 PANTHER PTHR21256 2 87 1.8E-19 T 19-04-2016 AMED_8646 4f6cf937b7caa280205285678f72b9c3 141 PANTHER PTHR35174 2 136 4.6E-57 T 19-04-2016 AMED_8646 4f6cf937b7caa280205285678f72b9c3 141 SUPERFAMILY SSF54909 1 118 1.53E-31 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8646 4f6cf937b7caa280205285678f72b9c3 141 PANTHER PTHR35174:SF1 2 136 4.6E-57 T 19-04-2016 AMED_8646 4f6cf937b7caa280205285678f72b9c3 141 Gene3D G3DSA:3.30.70.1060 1 118 5.0E-39 T 19-04-2016 AMED_8646 4f6cf937b7caa280205285678f72b9c3 141 Pfam PF03795 YCII-related domain 1 115 2.0E-24 T 19-04-2016 IPR005545 YCII-related AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 SUPERFAMILY SSF51011 366 506 2.19E-19 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 SUPERFAMILY SSF51445 17 382 6.33E-102 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 PANTHER PTHR31776:SF1 15 244 6.7E-173 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 PANTHER PTHR31776:SF1 268 298 6.7E-173 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 PANTHER PTHR31776:SF1 320 514 6.7E-173 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 PANTHER PTHR31776 15 244 6.7E-173 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 PANTHER PTHR31776 268 298 6.7E-173 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 PANTHER PTHR31776 320 514 6.7E-173 T 19-04-2016 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 290 500 1.6E-30 T 19-04-2016 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 SMART SM00813 290 500 1.5E-51 T 19-04-2016 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_7484 507cf485238b7df39a3d3a4a56fb84e0 514 Gene3D G3DSA:3.20.20.80 40 311 3.5E-28 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8568 58e41cb13517318090830607a79c9e41 192 Pfam PF01327 Polypeptide deformylase 4 156 1.2E-45 T 19-04-2016 IPR023635 Peptide deformylase AMED_8568 58e41cb13517318090830607a79c9e41 192 PANTHER PTHR10458 2 191 1.4E-60 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 SUPERFAMILY SSF56420 3 182 1.44E-54 T 19-04-2016 IPR023635 Peptide deformylase AMED_8568 58e41cb13517318090830607a79c9e41 192 Hamap MF_00163 Peptide deformylase [def]. 2 170 28.893 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 164 3.5E-40 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 Gene3D G3DSA:3.90.45.10 4 184 2.6E-63 T 19-04-2016 IPR023635 Peptide deformylase AMED_8568 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 33 62 3.6E-31 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 97 108 3.6E-31 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 128 157 3.6E-31 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 PRINTS PR01576 Peptide deformylase signature 109 127 3.6E-31 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_8568 58e41cb13517318090830607a79c9e41 192 PIRSF PIRSF004749 1 182 4.3E-45 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMED_3858 d092422f5b0ee27e262c41b3d35d6aab 460 Gene3D G3DSA:3.20.20.80 70 419 1.4E-47 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3858 d092422f5b0ee27e262c41b3d35d6aab 460 SUPERFAMILY SSF51445 50 418 5.03E-57 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3858 d092422f5b0ee27e262c41b3d35d6aab 460 PANTHER PTHR10353 96 413 8.6E-32 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_3858 d092422f5b0ee27e262c41b3d35d6aab 460 PANTHER PTHR10353:SF36 96 413 8.6E-32 T 19-04-2016 AMED_3858 d092422f5b0ee27e262c41b3d35d6aab 460 Pfam PF00232 Glycosyl hydrolase family 1 50 422 1.8E-40 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_1127 ff7195185abc9689ee25dacdef6586f0 220 Pfam PF13349 Putative adhesin 50 217 2.8E-11 T 19-04-2016 IPR025164 Putative adhesin AMED_4727 e9e9788f398f02bd3f3c490188017133 223 PANTHER PTHR11441 1 172 2.3E-19 T 19-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 AMED_4727 e9e9788f398f02bd3f3c490188017133 223 Gene3D G3DSA:3.40.50.300 7 117 1.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4727 e9e9788f398f02bd3f3c490188017133 223 SUPERFAMILY SSF52540 2 138 3.07E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4727 e9e9788f398f02bd3f3c490188017133 223 Pfam PF00265 Thymidine kinase 2 165 2.7E-21 T 19-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 AMED_4727 e9e9788f398f02bd3f3c490188017133 223 Gene3D G3DSA:3.40.50.300 166 207 1.2E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4727 e9e9788f398f02bd3f3c490188017133 223 PIRSF PIRSF035805 1 215 1.0E-34 T 19-04-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 SUPERFAMILY SSF161098 83 311 1.96E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 Gene3D G3DSA:1.10.3720.10 34 311 1.7E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 316 1.1E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 PANTHER PTHR32243 180 321 7.8E-73 T 19-04-2016 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 PANTHER PTHR32243 29 164 7.8E-73 T 19-04-2016 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 PANTHER PTHR32243:SF40 180 321 7.8E-73 T 19-04-2016 AMED_4363 3b9126938d8c73e3cc0cc9af4b78a153 328 PANTHER PTHR32243:SF40 29 164 7.8E-73 T 19-04-2016 AMED_8349 6c2b0af86d13e436cc317f19b724f677 275 Gene3D G3DSA:3.40.50.150 5 132 5.5E-9 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8349 6c2b0af86d13e436cc317f19b724f677 275 SUPERFAMILY SSF53335 13 128 1.26E-10 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 PANTHER PTHR21661:SF35 7 390 4.8E-74 T 19-04-2016 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 Pfam PF06441 Epoxide hydrolase N terminus 7 108 1.2E-33 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 350 372 5.2E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 184 197 5.2E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 125 140 5.2E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 PRINTS PR00412 Epoxide hydrolase signature 99 117 5.2E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 SUPERFAMILY SSF109854 381 513 2.08E-13 T 19-04-2016 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 385 507 4.1E-8 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 PANTHER PTHR21661 7 390 4.8E-74 T 19-04-2016 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 Gene3D G3DSA:3.40.50.1820 5 376 1.4E-118 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 387 562 6.7E-27 T 19-04-2016 IPR017520 Conserved hypothetical protein CHP03086 AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 385 543 9.6E-16 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_1348 1c90d4d1fd5d59e18f536220b94be086 568 SUPERFAMILY SSF53474 6 375 1.81E-76 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0828 1ab40e973670db28fe5f383772cb91fe 137 SUPERFAMILY SSF102462 4 136 3.82E-45 T 19-04-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AMED_0828 1ab40e973670db28fe5f383772cb91fe 137 Gene3D G3DSA:3.40.1490.10 4 137 1.2E-58 T 19-04-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AMED_0828 1ab40e973670db28fe5f383772cb91fe 137 Pfam PF09391 Protein of unknown function (DUF2000) 6 136 9.6E-43 T 19-04-2016 IPR018988 Protein of unknown function DUF2000 AMED_0986 17df8037ff95d7600be6c644938cbd38 172 Pfam PF04138 GtrA-like protein 24 154 3.8E-23 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 Pfam PF00005 ABC transporter 331 470 4.9E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 PANTHER PTHR24222 15 516 3.2E-92 T 19-04-2016 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 SMART SM00382 340 516 1.9E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 SUPERFAMILY SSF52540 311 518 2.33E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 Gene3D G3DSA:3.40.50.300 317 517 2.8E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 PANTHER PTHR24222:SF30 15 516 3.2E-92 T 19-04-2016 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 SUPERFAMILY SSF90123 4 301 4.19E-28 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 Gene3D G3DSA:1.20.1560.10 4 304 9.4E-18 T 19-04-2016 AMED_1051 d0e943519b83db3cae59d0cd656cf55d 530 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 9 500 5.1E-126 T 19-04-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 PANTHER PTHR11124 1 73 4.9E-41 T 19-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 PANTHER PTHR11124 92 222 4.9E-41 T 19-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 PANTHER PTHR11124:SF2 1 73 4.9E-41 T 19-04-2016 AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 PIRSF PIRSF000883 1 223 1.0E-42 T 19-04-2016 IPR011152 Phosphoesterase MJ0912 AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 PANTHER PTHR11124:SF2 92 222 4.9E-41 T 19-04-2016 AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 3 184 1.0E-22 T 19-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 Gene3D G3DSA:3.60.21.10 2 206 2.4E-46 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_2705 5033415578d4fd72e94a4fa71eada89a 242 SUPERFAMILY SSF56300 3 213 3.94E-42 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 SUPERFAMILY SSF54373 339 467 9.81E-42 T 19-04-2016 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 PANTHER PTHR10668 34 513 2.2E-51 T 19-04-2016 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.50.50.60 35 176 1.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.50.50.60 244 345 1.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.50.50.60 463 521 1.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 PANTHER PTHR10668:SF68 34 513 2.2E-51 T 19-04-2016 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.30.410.10 346 459 1.5E-73 T 19-04-2016 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 Gene3D G3DSA:3.30.410.10 177 234 1.5E-73 T 19-04-2016 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 SUPERFAMILY SSF51905 34 335 1.47E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 SUPERFAMILY SSF51905 464 521 1.47E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7505 bb80b5fb0c3039723c13e33f89684356 523 Pfam PF05199 GMC oxidoreductase 461 513 9.9E-12 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_4485 a1c492a0e252003e1dfb6d654eea1d16 330 Gene3D G3DSA:3.40.50.1820 46 328 1.6E-73 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4485 a1c492a0e252003e1dfb6d654eea1d16 330 PANTHER PTHR10907:SF56 36 258 1.7E-18 T 19-04-2016 AMED_4485 a1c492a0e252003e1dfb6d654eea1d16 330 Pfam PF00756 Putative esterase 62 321 6.1E-32 T 19-04-2016 IPR000801 Putative esterase AMED_4485 a1c492a0e252003e1dfb6d654eea1d16 330 SUPERFAMILY SSF53474 48 326 2.63E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4485 a1c492a0e252003e1dfb6d654eea1d16 330 PANTHER PTHR10907 36 258 1.7E-18 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 PANTHER PTHR24096 78 669 4.9E-142 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 ProSitePatterns PS00455 Putative AMP-binding domain signature. 332 343 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.40.50.980 361 486 1.4E-34 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Pfam PF00501 AMP-binding enzyme 182 575 3.2E-62 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 SUPERFAMILY SSF55961 6 102 1.78E-11 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.30.300.30 570 668 2.5E-33 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Pfam PF13193 AMP-binding enzyme C-terminal domain 585 659 3.8E-22 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:2.30.38.10 499 568 1.1E-12 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.40.50.980 181 345 4.5E-20 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 PANTHER PTHR24096:SF232 78 669 4.9E-142 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 SUPERFAMILY SSF56801 175 669 3.14E-123 T 19-04-2016 AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Gene3D G3DSA:3.30.530.20 6 132 4.3E-5 T 19-04-2016 IPR023393 START-like domain AMED_3099 d5412a366973e68c7171125ed8ad36c1 671 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 8 97 3.8E-6 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_1629 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 2.1E-46 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 328 344 2.1E-46 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 2.1E-46 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 2.1E-46 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 2.1E-46 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 2.1E-46 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.30.9.10 164 270 1.6E-9 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.30.9.10 325 362 1.6E-9 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 SUPERFAMILY SSF51905 10 173 4.43E-65 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1629 1513a80603765c00c7577e194ecc8209 483 SUPERFAMILY SSF51905 264 355 4.43E-65 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PANTHER PTHR13789 1 424 5.7E-149 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 PANTHER PTHR13789:SF90 1 424 5.7E-149 T 19-04-2016 AMED_1629 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.50.50.60 7 163 2.0E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1629 1513a80603765c00c7577e194ecc8209 483 Gene3D G3DSA:3.50.50.60 275 314 2.0E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1629 1513a80603765c00c7577e194ecc8209 483 Pfam PF01494 FAD binding domain 12 343 5.6E-87 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5807 27a52296d095a1bc2b2e826cfde63aad 343 SUPERFAMILY SSF52980 35 138 9.33E-9 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_5807 27a52296d095a1bc2b2e826cfde63aad 343 Gene3D G3DSA:3.40.1350.10 34 140 1.5E-9 T 19-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 AMED_5807 27a52296d095a1bc2b2e826cfde63aad 343 SUPERFAMILY SSF63829 201 317 3.27E-7 T 19-04-2016 AMED_5807 27a52296d095a1bc2b2e826cfde63aad 343 Gene3D G3DSA:2.120.10.30 199 319 7.0E-5 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_5807 27a52296d095a1bc2b2e826cfde63aad 343 Pfam PF04471 Restriction endonuclease 35 136 5.4E-7 T 19-04-2016 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 PANTHER PTHR24421 12 18 7.3E-33 T 19-04-2016 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 PANTHER PTHR24421 573 721 7.3E-33 T 19-04-2016 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 PANTHER PTHR24421 739 784 7.3E-33 T 19-04-2016 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 SUPERFAMILY SSF55874 657 783 2.55E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 Pfam PF07730 Histidine kinase 578 642 2.3E-13 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 Pfam PF07730 Histidine kinase 205 268 2.0E-9 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 PANTHER PTHR24421:SF22 12 18 7.3E-33 T 19-04-2016 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 PANTHER PTHR24421:SF22 573 721 7.3E-33 T 19-04-2016 AMED_6882 bbde66d83a59a8b2a3cc475ce55d18ea 784 PANTHER PTHR24421:SF22 739 784 7.3E-33 T 19-04-2016 AMED_4780 2a6fa9f9cd1561bf13fd415f260b5f9e 157 SUPERFAMILY SSF54427 4 140 4.59E-26 T 19-04-2016 IPR032710 NTF2-like domain AMED_4780 2a6fa9f9cd1561bf13fd415f260b5f9e 157 Gene3D G3DSA:3.10.450.50 6 141 3.5E-25 T 19-04-2016 IPR032710 NTF2-like domain AMED_4780 2a6fa9f9cd1561bf13fd415f260b5f9e 157 Pfam PF13577 SnoaL-like domain 6 135 4.6E-20 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 396 5.9E-78 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 PANTHER PTHR30290 25 475 1.0E-102 T 19-04-2016 AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 PIRSF PIRSF002741 1 483 3.5E-78 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 PANTHER PTHR30290:SF14 25 475 1.0E-102 T 19-04-2016 AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 Gene3D G3DSA:3.10.105.10 278 457 2.1E-39 T 19-04-2016 AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 SUPERFAMILY SSF53850 23 478 2.71E-108 T 19-04-2016 AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 Gene3D G3DSA:3.90.76.10 34 177 1.5E-33 T 19-04-2016 AMED_0067 1a57ebb72d85201b84ffb96cc394640c 489 Gene3D G3DSA:3.40.190.10 178 277 6.9E-36 T 19-04-2016 AMED_4961 546756ce5a802dc322b423349badb83c 325 SUPERFAMILY SSF53335 244 258 1.67E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4961 546756ce5a802dc322b423349badb83c 325 SUPERFAMILY SSF53335 285 310 1.67E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4961 546756ce5a802dc322b423349badb83c 325 SUPERFAMILY SSF53335 35 196 1.67E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4961 546756ce5a802dc322b423349badb83c 325 PANTHER PTHR30468:SF6 17 321 9.5E-87 T 19-04-2016 AMED_4961 546756ce5a802dc322b423349badb83c 325 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 19 319 6.0E-114 T 19-04-2016 IPR017804 Methyltransferase EgtD-like AMED_4961 546756ce5a802dc322b423349badb83c 325 Hamap MF_02037 Histidine N-alpha-methyltransferase [egtD]. 6 322 57.331 T 19-04-2016 IPR032888 Histidine N-alpha-methyltransferase, Actinobacteria-type GO:0008276|GO:0052699 KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550|UniPathway: UPA01014 AMED_4961 546756ce5a802dc322b423349badb83c 325 PIRSF PIRSF018005 1 323 4.0E-131 T 19-04-2016 IPR017804 Methyltransferase EgtD-like AMED_4961 546756ce5a802dc322b423349badb83c 325 Gene3D G3DSA:3.40.50.150 49 211 6.5E-7 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4961 546756ce5a802dc322b423349badb83c 325 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 193 317 1.7E-41 T 19-04-2016 IPR019257 Histidine-specific methyltransferase, SAM-dependent AMED_4961 546756ce5a802dc322b423349badb83c 325 PANTHER PTHR30468 17 321 9.5E-87 T 19-04-2016 AMED_4340 3ad14dae61effa12685d6cddda464cef 185 SUPERFAMILY SSF101874 12 183 1.7E-60 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_4340 3ad14dae61effa12685d6cddda464cef 185 Pfam PF04264 YceI-like domain 14 180 2.8E-49 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_4340 3ad14dae61effa12685d6cddda464cef 185 PANTHER PTHR34406 4 183 3.7E-61 T 19-04-2016 AMED_4340 3ad14dae61effa12685d6cddda464cef 185 PANTHER PTHR34406:SF1 4 183 3.7E-61 T 19-04-2016 AMED_4340 3ad14dae61effa12685d6cddda464cef 185 Gene3D G3DSA:2.40.128.110 12 183 1.8E-67 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_4340 3ad14dae61effa12685d6cddda464cef 185 SMART SM00867 13 182 5.5E-74 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_8233 cd80cfee31803647bb2900a2e96d030e 584 SUPERFAMILY SSF55073 406 555 3.37E-41 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_8233 cd80cfee31803647bb2900a2e96d030e 584 PANTHER PTHR10799 432 554 3.0E-20 T 19-04-2016 AMED_8233 cd80cfee31803647bb2900a2e96d030e 584 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 398 554 1.6E-40 T 19-04-2016 IPR000160 GGDEF domain AMED_8233 cd80cfee31803647bb2900a2e96d030e 584 SMART SM00267 390 556 5.2E-52 T 19-04-2016 IPR000160 GGDEF domain AMED_8233 cd80cfee31803647bb2900a2e96d030e 584 Gene3D G3DSA:3.30.70.270 403 558 1.1E-48 T 19-04-2016 AMED_8233 cd80cfee31803647bb2900a2e96d030e 584 Pfam PF00990 Diguanylate cyclase, GGDEF domain 401 552 2.0E-41 T 19-04-2016 IPR000160 GGDEF domain AMED_8554 ff9fac0496aed59807601246fb64174e 542 Gene3D G3DSA:1.10.560.10 6 186 8.3E-47 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_8554 ff9fac0496aed59807601246fb64174e 542 Hamap MF_00600 60 kDa chaperonin [groL]. 1 540 41.011 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_8554 ff9fac0496aed59807601246fb64174e 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 19-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 AMED_8554 ff9fac0496aed59807601246fb64174e 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 2.1E-246 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_8554 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF54849 137 201 6.64E-25 T 19-04-2016 AMED_8554 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF52029 184 374 3.29E-82 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_8554 ff9fac0496aed59807601246fb64174e 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 523 6.1E-93 T 19-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMED_8554 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF48592 6 133 1.45E-71 T 19-04-2016 AMED_8554 ff9fac0496aed59807601246fb64174e 542 SUPERFAMILY SSF48592 404 519 1.45E-71 T 19-04-2016 AMED_8554 ff9fac0496aed59807601246fb64174e 542 Gene3D G3DSA:1.10.560.10 367 516 4.1E-37 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMED_8554 ff9fac0496aed59807601246fb64174e 542 Gene3D G3DSA:3.50.7.10 187 366 2.0E-97 T 19-04-2016 IPR027409 GroEL-like apical domain AMED_8554 ff9fac0496aed59807601246fb64174e 542 PANTHER PTHR11353 5 540 3.1E-215 T 19-04-2016 AMED_8554 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 266 289 2.6E-70 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_8554 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 26 52 2.6E-70 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_8554 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 82 109 2.6E-70 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_8554 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 348 373 2.6E-70 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_8554 ff9fac0496aed59807601246fb64174e 542 PRINTS PR00298 60kDa chaperonin signature 396 417 2.6E-70 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMED_7873 4d02259395066e2bdeed12ad4ad28921 247 Pfam PF01177 Asp/Glu/Hydantoin racemase 60 222 1.5E-6 T 19-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7873 4d02259395066e2bdeed12ad4ad28921 247 PANTHER PTHR40267 1 246 1.1E-52 T 19-04-2016 AMED_7873 4d02259395066e2bdeed12ad4ad28921 247 PIRSF PIRSF015736 4 244 4.5E-55 T 19-04-2016 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AMED_6407 2f37e3f214f0380824fa6069e392c1c0 273 Gene3D G3DSA:3.30.460.10 11 68 1.8E-7 T 19-04-2016 AMED_6407 2f37e3f214f0380824fa6069e392c1c0 273 SUPERFAMILY SSF81301 30 63 6.95E-5 T 19-04-2016 AMED_5669 e6823e2a5a1b771da979ff782339a00e 713 PANTHER PTHR33908 21 285 9.1E-48 T 19-04-2016 AMED_5669 e6823e2a5a1b771da979ff782339a00e 713 PANTHER PTHR33908 318 499 9.1E-48 T 19-04-2016 AMED_5669 e6823e2a5a1b771da979ff782339a00e 713 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 81 243 1.8E-27 T 19-04-2016 AMED_5669 e6823e2a5a1b771da979ff782339a00e 713 PANTHER PTHR33908:SF3 21 285 9.1E-48 T 19-04-2016 AMED_5669 e6823e2a5a1b771da979ff782339a00e 713 PANTHER PTHR33908:SF3 318 499 9.1E-48 T 19-04-2016 AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 PANTHER PTHR30595:SF4 1 308 1.3E-43 T 19-04-2016 AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 Pfam PF13280 WYL domain 140 318 1.8E-39 T 19-04-2016 IPR026881 WYL domain AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 SUPERFAMILY SSF46785 3 57 7.03E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 Gene3D G3DSA:1.10.10.10 2 63 1.1E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 ProSitePatterns PS00894 DeoR-type HTH domain signature. 5 39 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 Pfam PF08279 HTH domain 9 58 4.6E-10 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_8887 53be0d71e4afbfdcda652e194ed38f49 323 PANTHER PTHR30595 1 308 1.3E-43 T 19-04-2016 AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 SUPERFAMILY SSF46785 28 95 1.2E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 SUPERFAMILY SSF48008 98 228 8.11E-20 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 PANTHER PTHR11751 25 117 9.4E-21 T 19-04-2016 AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 Gene3D G3DSA:1.20.120.530 94 231 6.7E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 Gene3D G3DSA:1.10.10.10 22 91 5.9E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 91 1.9E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 SMART SM00895 101 221 1.4E-16 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 Pfam PF07729 FCD domain 103 220 3.5E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7133 487bf3bef8ffb1713ea697618ecd6b40 236 SMART SM00345 33 91 1.1E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 PANTHER PTHR34135 66 256 1.6E-67 T 19-04-2016 AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 PANTHER PTHR34135:SF2 66 256 1.6E-67 T 19-04-2016 AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 ProSitePatterns PS00953 Glycosyl hydrolases family 25 active sites signature. 66 99 - T 19-04-2016 IPR008270 Glycoside hydrolase, family 25, active site GO:0003796|GO:0009253|GO:0016998 AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 SUPERFAMILY SSF51445 63 261 2.44E-63 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 Pfam PF01183 Glycosyl hydrolases family 25 66 248 5.9E-47 T 19-04-2016 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 SMART SM00641 62 171 4.4E-40 T 19-04-2016 IPR018077 Glycoside hydrolase, family 25 subgroup AMED_9042 15bb7cf4f6373c008d1afe7ed64edfee 266 Gene3D G3DSA:3.20.20.80 64 264 5.6E-71 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3731 3e194f808fa284b684b9f607da4fb968 161 PANTHER PTHR38011:SF1 6 136 2.3E-25 T 19-04-2016 AMED_3731 3e194f808fa284b684b9f607da4fb968 161 Gene3D G3DSA:3.40.430.10 1 134 5.4E-20 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_3731 3e194f808fa284b684b9f607da4fb968 161 PANTHER PTHR38011 6 136 2.3E-25 T 19-04-2016 AMED_3731 3e194f808fa284b684b9f607da4fb968 161 Pfam PF01872 RibD C-terminal domain 7 125 5.5E-13 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_3731 3e194f808fa284b684b9f607da4fb968 161 SUPERFAMILY SSF53597 10 134 3.71E-11 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7431 cdfd7519149b7e6f362be59f409224e9 240 SUPERFAMILY SSF53335 5 233 1.48E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7431 cdfd7519149b7e6f362be59f409224e9 240 Gene3D G3DSA:3.40.50.150 174 221 1.3E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7431 cdfd7519149b7e6f362be59f409224e9 240 Gene3D G3DSA:3.40.50.150 4 142 1.3E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7431 cdfd7519149b7e6f362be59f409224e9 240 Pfam PF13649 Methyltransferase domain 44 133 1.2E-12 T 19-04-2016 AMED_3230 606ab6cca41b9567df24865461269405 154 PANTHER PTHR11746:SF63 1 146 6.4E-27 T 19-04-2016 AMED_3230 606ab6cca41b9567df24865461269405 154 SUPERFAMILY SSF53335 2 140 4.8E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3230 606ab6cca41b9567df24865461269405 154 Gene3D G3DSA:3.40.50.150 2 144 6.1E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3230 606ab6cca41b9567df24865461269405 154 Pfam PF00891 O-methyltransferase 2 129 2.2E-24 T 19-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 AMED_3230 606ab6cca41b9567df24865461269405 154 PANTHER PTHR11746 1 146 6.4E-27 T 19-04-2016 AMED_3452 542efc62a28228218d4ad2237e3ef048 410 SUPERFAMILY SSF63825 137 335 6.54E-5 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 673 687 4.25E-7 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 423 438 4.25E-7 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 616 633 4.25E-7 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 210 229 4.25E-7 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00943 Copper-transporting ATPase signature 363 377 4.25E-7 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 159 741 8.9E-178 T 19-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 440 454 2.55E-25 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 596 2.55E-25 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 674 2.55E-25 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 658 2.55E-25 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 290 304 2.55E-25 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Pfam PF00122 E1-E2 ATPase 213 431 2.8E-62 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 ProSitePatterns PS01047 Heavy-metal-associated domain. 18 46 - T 19-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 442 448 - T 19-04-2016 IPR018303 P-type ATPase, phosphorylation site AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.40.50.1000 412 456 3.4E-53 T 19-04-2016 IPR023214 HAD-like domain AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.40.50.1000 567 707 3.4E-53 T 19-04-2016 IPR023214 HAD-like domain AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF81665 207 244 1.44E-11 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF81665 341 434 1.44E-11 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF81665 688 713 1.44E-11 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 205 742 3.5E-154 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF81653 245 340 1.83E-23 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:2.70.150.10 208 341 9.5E-26 T 19-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF56784 496 739 9.35E-60 T 19-04-2016 IPR023214 HAD-like domain AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF56784 438 458 9.35E-60 T 19-04-2016 IPR023214 HAD-like domain AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 SUPERFAMILY SSF55008 9 80 2.62E-19 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PANTHER PTHR24093:SF50 13 742 2.3E-239 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Pfam PF00403 Heavy-metal-associated domain 16 74 3.5E-12 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.30.70.100 10 77 5.5E-23 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Pfam PF00702 haloacid dehalogenase-like hydrolase 436 653 1.3E-45 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 PANTHER PTHR24093 13 742 2.3E-239 T 19-04-2016 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 Gene3D G3DSA:3.40.1110.10 457 566 3.3E-23 T 19-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 AMED_3510 5a1340244b6b6bc066f3b4cd89ffae31 755 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 214 720 4.7E-84 T 19-04-2016 IPR001757 P-type ATPase GO:0016021 AMED_2219 2616875e8af685efea7ab98ad9aa8b91 198 Pfam PF10821 Protein of unknown function (DUF2567) 57 194 1.5E-9 T 19-04-2016 IPR021213 Protein of unknown function DUF2567 AMED_9182 bfe03c1ac554353f5d020e038dd6c132 130 SUPERFAMILY SSF54427 4 118 1.36E-27 T 19-04-2016 IPR032710 NTF2-like domain AMED_9182 bfe03c1ac554353f5d020e038dd6c132 130 Pfam PF12680 SnoaL-like domain 10 114 2.2E-20 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_9182 bfe03c1ac554353f5d020e038dd6c132 130 Gene3D G3DSA:3.10.450.50 2 129 8.9E-36 T 19-04-2016 IPR032710 NTF2-like domain AMED_6136 e76fa77baebc45d538378dbadbaa2266 533 Pfam PF13365 Trypsin-like peptidase domain 23 171 9.2E-11 T 19-04-2016 AMED_6136 e76fa77baebc45d538378dbadbaa2266 533 SUPERFAMILY SSF50494 11 200 5.19E-13 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_6136 e76fa77baebc45d538378dbadbaa2266 533 Gene3D G3DSA:2.40.10.10 11 92 6.5E-6 T 19-04-2016 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 Gene3D G3DSA:3.40.50.1820 6 255 4.9E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PANTHER PTHR10992 200 256 2.6E-28 T 19-04-2016 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PANTHER PTHR10992 4 165 2.6E-28 T 19-04-2016 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PANTHER PTHR10992:SF771 200 256 2.6E-28 T 19-04-2016 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PANTHER PTHR10992:SF771 4 165 2.6E-28 T 19-04-2016 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 38 53 1.2E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 95 1.2E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 1.2E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 Pfam PF12697 Alpha/beta hydrolase family 15 251 1.6E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_9191 f1bad9e01b06144e4b02ba0902d13362 259 SUPERFAMILY SSF53474 4 256 5.5E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 Gene3D G3DSA:1.10.10.60 7 62 1.3E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 PANTHER PTHR30055:SF10 2 194 1.5E-36 T 19-04-2016 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 PANTHER PTHR30055 2 194 1.5E-36 T 19-04-2016 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 SUPERFAMILY SSF46689 6 78 1.56E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 Gene3D G3DSA:1.10.357.10 63 192 1.9E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 8.3E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 8.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 8.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2911 86cad3d339d418c6ca85d11a161504d0 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_2320 7084ee832f94b4345e76a5adb6eeebe7 173 SUPERFAMILY SSF160904 24 172 6.54E-29 T 19-04-2016 AMED_2320 7084ee832f94b4345e76a5adb6eeebe7 173 PANTHER PTHR35525 24 172 1.4E-35 T 19-04-2016 AMED_2320 7084ee832f94b4345e76a5adb6eeebe7 173 PANTHER PTHR35525:SF1 24 172 1.4E-35 T 19-04-2016 AMED_2320 7084ee832f94b4345e76a5adb6eeebe7 173 Pfam PF11706 CGNR zinc finger 134 172 2.3E-9 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_2320 7084ee832f94b4345e76a5adb6eeebe7 173 Gene3D G3DSA:1.10.3300.10 24 172 3.9E-34 T 19-04-2016 IPR023286 ABATE domain AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 84 95 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 335 344 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 186 208 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 131 147 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 344 355 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 267 278 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 313 328 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 285 312 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PRINTS PR00359 B-class P450 signature 148 163 2.9E-55 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 Pfam PF00067 Cytochrome P450 174 366 4.7E-25 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 SUPERFAMILY SSF48264 18 395 3.27E-89 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 PANTHER PTHR11712 27 395 1.5E-95 T 19-04-2016 AMED_5628 824b0ecd33c90dbeb1525276d0e76562 395 Gene3D G3DSA:1.10.630.10 7 395 5.9E-119 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 Gene3D G3DSA:3.30.1550.10 4 72 1.0E-17 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 PANTHER PTHR11661:SF7 5 141 1.0E-38 T 19-04-2016 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 Gene3D G3DSA:1.10.10.250 73 140 3.5E-27 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 11 67 1.4E-12 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 SMART SM00649 11 140 2.4E-50 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 SUPERFAMILY SSF54747 4 85 1.06E-14 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 PANTHER PTHR11661 5 141 1.0E-38 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 SUPERFAMILY SSF46906 70 139 6.67E-22 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 7 141 23.337 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 139 5.3E-22 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMED_8760 5a247f630e16d17f04712df4cd6ec984 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 38 74 9.0E-9 T 19-04-2016 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 Gene3D G3DSA:3.30.300.30 531 628 1.2E-11 T 19-04-2016 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 ProSitePatterns PS00455 Putative AMP-binding domain signature. 275 286 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 Gene3D G3DSA:3.40.50.980 282 439 9.9E-21 T 19-04-2016 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 PANTHER PTHR24095 5 657 2.3E-264 T 19-04-2016 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 SUPERFAMILY SSF56801 41 636 6.67E-125 T 19-04-2016 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 Pfam PF00501 AMP-binding enzyme 105 532 5.4E-52 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 42 97 4.5E-11 T 19-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 PANTHER PTHR24095:SF46 5 657 2.3E-264 T 19-04-2016 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 8 656 5.5E-239 T 19-04-2016 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16 AMED_0274 3f7c027b4441dad1f12e68ceac45c0fd 659 Gene3D G3DSA:3.40.50.980 105 281 4.6E-31 T 19-04-2016 AMED_9360 613fa2f2e3c36c68e4a461f9af5847cf 308 Gene3D G3DSA:3.40.50.300 46 298 1.2E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9360 613fa2f2e3c36c68e4a461f9af5847cf 308 PANTHER PTHR13696 18 307 8.1E-94 T 19-04-2016 AMED_9360 613fa2f2e3c36c68e4a461f9af5847cf 308 Pfam PF13614 AAA domain 45 223 1.7E-58 T 19-04-2016 IPR025669 AAA domain AMED_9360 613fa2f2e3c36c68e4a461f9af5847cf 308 PANTHER PTHR13696:SF52 18 307 8.1E-94 T 19-04-2016 AMED_9360 613fa2f2e3c36c68e4a461f9af5847cf 308 SUPERFAMILY SSF52540 45 299 1.04E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7328 c895c80818fb7d8e8e1870ba813df069 283 PANTHER PTHR14194:SF59 4 279 3.3E-97 T 19-04-2016 AMED_7328 c895c80818fb7d8e8e1870ba813df069 283 Pfam PF13460 NAD(P)H-binding 8 99 2.8E-6 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7328 c895c80818fb7d8e8e1870ba813df069 283 PANTHER PTHR14194 4 279 3.3E-97 T 19-04-2016 AMED_7328 c895c80818fb7d8e8e1870ba813df069 283 Gene3D G3DSA:3.40.50.720 4 211 1.5E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7328 c895c80818fb7d8e8e1870ba813df069 283 SUPERFAMILY SSF51735 4 242 7.46E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1917 a680528bb52d5c7aee80d031b8862650 162 SUPERFAMILY SSF46785 20 153 2.36E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1917 a680528bb52d5c7aee80d031b8862650 162 SMART SM00347 37 139 1.8E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1917 a680528bb52d5c7aee80d031b8862650 162 PANTHER PTHR33164 8 162 5.4E-16 T 19-04-2016 AMED_1917 a680528bb52d5c7aee80d031b8862650 162 Gene3D G3DSA:1.10.10.10 11 154 3.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1917 a680528bb52d5c7aee80d031b8862650 162 Pfam PF12802 MarR family 49 102 9.4E-8 T 19-04-2016 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 Gene3D G3DSA:3.40.190.10 374 408 1.2E-6 T 19-04-2016 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 Gene3D G3DSA:3.40.190.10 192 328 1.2E-6 T 19-04-2016 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 PANTHER PTHR30061:SF1 1 409 1.1E-51 T 19-04-2016 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 Pfam PF01547 Bacterial extracellular solute-binding protein 38 319 7.1E-25 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 SUPERFAMILY SSF53850 21 409 1.14E-52 T 19-04-2016 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 Gene3D G3DSA:3.40.190.10 20 191 7.0E-32 T 19-04-2016 AMED_4429 1f714a97d84e9fa746c1e8834f95abee 412 PANTHER PTHR30061 1 409 1.1E-51 T 19-04-2016 AMED_6341 87cefb45072edaaaccbd9a2b05618f38 168 Gene3D G3DSA:3.30.300.70 2 70 2.0E-20 T 19-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal AMED_6341 87cefb45072edaaaccbd9a2b05618f38 168 PANTHER PTHR33867:SF1 1 164 5.8E-27 T 19-04-2016 AMED_6341 87cefb45072edaaaccbd9a2b05618f38 168 PANTHER PTHR33867 1 164 5.8E-27 T 19-04-2016 AMED_6341 87cefb45072edaaaccbd9a2b05618f38 168 SUPERFAMILY SSF75420 3 73 3.27E-17 T 19-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal AMED_6341 87cefb45072edaaaccbd9a2b05618f38 168 Pfam PF02576 Putative ribosome maturation factor RimP 1 133 1.5E-27 T 19-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 AMED_6341 87cefb45072edaaaccbd9a2b05618f38 168 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 3 137 17.149 T 19-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 Pfam PF00067 Cytochrome P450 230 382 2.1E-23 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PANTHER PTHR24286:SF24 230 409 2.6E-21 T 19-04-2016 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 350 361 2.6E-6 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 146 161 2.6E-6 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 286 313 2.6E-6 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 269 280 2.6E-6 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PRINTS PR00359 B-class P450 signature 314 329 2.6E-6 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 Gene3D G3DSA:1.10.630.10 147 387 9.0E-34 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 PANTHER PTHR24286 230 409 2.6E-21 T 19-04-2016 AMED_5552 4aa8e5dae29616eecbfb43099f4c45ab 410 SUPERFAMILY SSF48264 6 389 1.3E-34 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3362 434c30329692b8c0e32f5e10e0dbadc7 238 Gene3D G3DSA:3.40.190.10 12 137 5.2E-15 T 19-04-2016 AMED_3362 434c30329692b8c0e32f5e10e0dbadc7 238 SUPERFAMILY SSF53850 31 226 2.92E-25 T 19-04-2016 AMED_3362 434c30329692b8c0e32f5e10e0dbadc7 238 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 220 1.1E-16 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_3362 434c30329692b8c0e32f5e10e0dbadc7 238 SMART SM00062 16 237 7.6E-14 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 SUPERFAMILY SSF46785 181 308 7.88E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 SUPERFAMILY SSF46785 13 146 1.65E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 PANTHER PTHR33204 1 172 4.9E-27 T 19-04-2016 AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 Gene3D G3DSA:1.10.10.10 11 110 3.4E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 PANTHER PTHR33204:SF10 1 172 4.9E-27 T 19-04-2016 AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 Gene3D G3DSA:1.10.10.10 182 268 1.3E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 Pfam PF01638 HxlR-like helix-turn-helix 186 269 5.3E-10 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6958 276fe5c56f1dc25647c72509c95e61a3 318 Pfam PF01638 HxlR-like helix-turn-helix 22 109 2.1E-14 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 Pfam PF00347 Ribosomal protein L6 11 83 1.2E-17 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 Pfam PF00347 Ribosomal protein L6 92 165 2.5E-19 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 PANTHER PTHR11655 1 179 2.0E-89 T 19-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 Gene3D G3DSA:3.90.930.12 2 83 4.4E-30 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 SUPERFAMILY SSF56053 84 178 3.8E-34 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 2.9E-73 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 Gene3D G3DSA:3.90.930.12 84 178 1.1E-37 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 SUPERFAMILY SSF56053 1 83 3.93E-25 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 38.175 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 PIRSF PIRSF002162 1 178 2.9E-48 T 19-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 PRINTS PR00059 Ribosomal protein L6 signature 142 163 2.4E-31 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 PRINTS PR00059 Ribosomal protein L6 signature 72 97 2.4E-31 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 PRINTS PR00059 Ribosomal protein L6 signature 100 116 2.4E-31 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 PANTHER PTHR11655:SF14 1 179 2.0E-89 T 19-04-2016 AMED_0692 223c270e17f0d2a91d960e47fda71fee 179 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 19-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 445 461 5.5E-26 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 492 511 5.5E-26 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 406 421 5.5E-26 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 642 663 5.5E-26 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 PRINTS PR00741 Glycosyl hydrolase family 29 signature 675 697 5.5E-26 T 19-04-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 Pfam PF16757 Alpha-L-fucosidase C-terminal domain 705 780 1.0E-6 T 19-04-2016 IPR031919 Alpha-L-fucosidase, C-terminal KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 Pfam PF01120 Alpha-L-fucosidase 346 689 1.5E-97 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 Gene3D G3DSA:3.20.20.80 345 692 2.4E-109 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 Gene3D G3DSA:2.60.40.1180 695 771 7.0E-6 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_5228 4b40497f144c3437bafc3a977083ce83 783 SUPERFAMILY SSF51445 346 692 9.26E-99 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5228 4b40497f144c3437bafc3a977083ce83 783 SMART SM00812 345 733 9.5E-129 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_5228 4b40497f144c3437bafc3a977083ce83 783 PANTHER PTHR10030 310 780 3.8E-94 T 19-04-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 Pfam PF12770 CHAT domain 914 1183 5.5E-46 T 19-04-2016 IPR024983 CHAT domain AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 Gene3D G3DSA:1.25.40.10 192 387 7.0E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 PANTHER PTHR19959 348 610 6.9E-16 T 19-04-2016 AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 SUPERFAMILY SSF48452 333 433 5.48E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 PANTHER PTHR19959:SF155 348 610 6.9E-16 T 19-04-2016 AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 PANTHER PTHR19959:SF155 150 294 6.9E-16 T 19-04-2016 AMED_2922 4e716b4b97856a30b87326faff773d0e 1184 PANTHER PTHR19959 150 294 6.9E-16 T 19-04-2016 AMED_0239 e85090b587341cbd70f329e24f9bc06f 271 PANTHER PTHR24220:SF476 33 242 3.2E-78 T 19-04-2016 AMED_0239 e85090b587341cbd70f329e24f9bc06f 271 SMART SM00382 56 229 1.3E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0239 e85090b587341cbd70f329e24f9bc06f 271 Pfam PF00005 ABC transporter 47 177 4.9E-20 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0239 e85090b587341cbd70f329e24f9bc06f 271 SUPERFAMILY SSF52540 45 243 1.09E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0239 e85090b587341cbd70f329e24f9bc06f 271 PANTHER PTHR24220 33 242 3.2E-78 T 19-04-2016 AMED_0239 e85090b587341cbd70f329e24f9bc06f 271 Gene3D G3DSA:3.40.50.300 44 243 6.0E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3395 7342bcef656a7cbe0e73d37fba31f591 202 PANTHER PTHR30055 6 196 3.1E-13 T 19-04-2016 AMED_3395 7342bcef656a7cbe0e73d37fba31f591 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 1.9E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3395 7342bcef656a7cbe0e73d37fba31f591 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3395 7342bcef656a7cbe0e73d37fba31f591 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3395 7342bcef656a7cbe0e73d37fba31f591 202 SUPERFAMILY SSF46689 12 76 1.15E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3395 7342bcef656a7cbe0e73d37fba31f591 202 Gene3D G3DSA:1.10.357.10 10 188 3.0E-21 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 PANTHER PTHR22762 9 664 3.9E-206 T 19-04-2016 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 SUPERFAMILY SSF74650 6 214 6.28E-29 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 SUPERFAMILY SSF51011 577 657 1.08E-22 T 19-04-2016 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 PANTHER PTHR22762:SF80 9 664 3.9E-206 T 19-04-2016 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 SUPERFAMILY SSF51445 216 575 3.61E-61 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 Gene3D G3DSA:3.20.20.70 247 313 3.2E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 Gene3D G3DSA:3.20.20.70 354 506 3.2E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4343 0701f7eaae57318aadfc1d5d75c0473f 667 Pfam PF01055 Glycosyl hydrolases family 31 208 660 1.2E-114 T 19-04-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 Pfam PF00561 alpha/beta hydrolase fold 23 267 1.3E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 PANTHER PTHR10992 2 281 7.5E-39 T 19-04-2016 AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 SUPERFAMILY SSF53474 8 280 6.7E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 6.4E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 6.4E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 6.4E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3020 4d38821ea8ec0e90531a2ed70a602fd2 281 Gene3D G3DSA:3.40.50.1820 6 281 8.9E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7316 a501eb851bb00003d64883f50306bbe9 75 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 1 61 1.5E-6 T 19-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 AMED_7316 a501eb851bb00003d64883f50306bbe9 75 Gene3D G3DSA:3.20.20.210 1 74 4.5E-19 T 19-04-2016 AMED_7316 a501eb851bb00003d64883f50306bbe9 75 PANTHER PTHR30519:SF3 1 74 1.3E-16 T 19-04-2016 AMED_7316 a501eb851bb00003d64883f50306bbe9 75 PANTHER PTHR30519 1 74 1.3E-16 T 19-04-2016 AMED_7316 a501eb851bb00003d64883f50306bbe9 75 SUPERFAMILY SSF51726 1 74 3.27E-14 T 19-04-2016 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 PANTHER PTHR22642:SF2 4 532 2.2E-137 T 19-04-2016 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:3.20.20.140 57 76 6.6E-37 T 19-04-2016 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:3.20.20.140 189 468 6.6E-37 T 19-04-2016 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 SUPERFAMILY SSF51338 3 55 1.13E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 SUPERFAMILY SSF51338 487 530 1.13E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:2.30.40.10 5 56 8.6E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:2.30.40.10 498 531 8.6E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 PANTHER PTHR22642 4 532 2.2E-137 T 19-04-2016 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 SUPERFAMILY SSF51556 183 488 2.36E-34 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 SUPERFAMILY SSF51556 54 111 2.36E-34 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 Pfam PF07969 Amidohydrolase family 45 528 7.9E-84 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_8397 1ebcb8165d4afe1c2c241c135406239a 533 Gene3D G3DSA:2.30.40.10 469 497 4.1E-5 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 PANTHER PTHR15680 4 117 5.8E-54 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 29.967 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 SUPERFAMILY SSF50104 1 115 1.0E-47 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 PRINTS PR00061 Ribosomal protein L19 signature 87 112 5.4E-42 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 PRINTS PR00061 Ribosomal protein L19 signature 33 62 5.4E-42 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 PRINTS PR00061 Ribosomal protein L19 signature 3 32 5.4E-42 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 Pfam PF01245 Ribosomal protein L19 4 112 2.3E-50 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 ProSitePatterns PS01015 Ribosomal protein L19 signature. 85 100 - T 19-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 PIRSF PIRSF002191 1 122 2.5E-51 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1963 30f7a376146bd572ebdf9c707b69fde2 122 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 112 2.3E-49 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_4603 bbbbb76ae6a362e2d6a684850471b123 369 PANTHER PTHR10314 21 368 1.9E-121 T 19-04-2016 AMED_4603 bbbbb76ae6a362e2d6a684850471b123 369 PANTHER PTHR10314:SF113 21 368 1.9E-121 T 19-04-2016 AMED_4603 bbbbb76ae6a362e2d6a684850471b123 369 SUPERFAMILY SSF53686 3 365 1.44E-76 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4603 bbbbb76ae6a362e2d6a684850471b123 369 Gene3D G3DSA:3.40.50.1100 132 366 6.4E-56 T 19-04-2016 AMED_4603 bbbbb76ae6a362e2d6a684850471b123 369 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 64 355 2.5E-60 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_0966 f4050d3c34112827363761e6182e4004 349 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 320 4.9E-65 T 19-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMED_0966 f4050d3c34112827363761e6182e4004 349 PANTHER PTHR22893 3 338 3.2E-119 T 19-04-2016 AMED_0966 f4050d3c34112827363761e6182e4004 349 SUPERFAMILY SSF51395 3 338 5.38E-96 T 19-04-2016 AMED_0966 f4050d3c34112827363761e6182e4004 349 Gene3D G3DSA:3.20.20.70 2 338 2.3E-100 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3700 949a8382e67d36f6fab42f5336dddd70 142 Pfam PF00872 Transposase, Mutator family 1 97 3.9E-24 T 19-04-2016 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMED_3700 949a8382e67d36f6fab42f5336dddd70 142 PANTHER PTHR33217 1 100 4.3E-26 T 19-04-2016 AMED_7622 7495f46d2f1fbc10db26367fce2c18d8 277 PANTHER PTHR30294 45 276 3.0E-33 T 19-04-2016 AMED_7622 7495f46d2f1fbc10db26367fce2c18d8 277 PANTHER PTHR30294:SF24 45 276 3.0E-33 T 19-04-2016 AMED_7622 7495f46d2f1fbc10db26367fce2c18d8 277 PIRSF PIRSF006648 4 277 3.8E-53 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_7622 7495f46d2f1fbc10db26367fce2c18d8 277 Pfam PF01061 ABC-2 type transporter 26 241 3.0E-30 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_4128 b0c9b0c24eb08cb1995b8c0e88a61cba 134 SUPERFAMILY SSF140376 3 62 2.75E-14 T 19-04-2016 AMED_4128 b0c9b0c24eb08cb1995b8c0e88a61cba 134 Pfam PF07498 Rho termination factor, N-terminal domain 95 122 3.7E-6 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMED_4128 b0c9b0c24eb08cb1995b8c0e88a61cba 134 Gene3D G3DSA:2.40.50.140 91 129 6.4E-4 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_4128 b0c9b0c24eb08cb1995b8c0e88a61cba 134 Pfam PF06150 ChaB 7 61 3.9E-16 T 19-04-2016 IPR009317 ChaB AMED_5841 6fcba5be374555883443cfbe6158cd31 366 Gene3D G3DSA:3.30.360.10 145 348 2.2E-24 T 19-04-2016 AMED_5841 6fcba5be374555883443cfbe6158cd31 366 PANTHER PTHR22604:SF105 5 355 1.6E-62 T 19-04-2016 AMED_5841 6fcba5be374555883443cfbe6158cd31 366 PANTHER PTHR22604 5 355 1.6E-62 T 19-04-2016 AMED_5841 6fcba5be374555883443cfbe6158cd31 366 Gene3D G3DSA:3.40.50.720 4 144 8.5E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5841 6fcba5be374555883443cfbe6158cd31 366 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 121 5.4E-17 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_5841 6fcba5be374555883443cfbe6158cd31 366 SUPERFAMILY SSF51735 3 154 7.55E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5841 6fcba5be374555883443cfbe6158cd31 366 SUPERFAMILY SSF55347 132 315 2.29E-29 T 19-04-2016 AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 Gene3D G3DSA:3.60.20.10 54 255 1.8E-48 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 Pfam PF00227 Proteasome subunit 52 236 8.2E-29 T 19-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 SUPERFAMILY SSF56235 17 265 3.05E-51 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 Hamap MF_02113_B Proteasome subunit beta [prcB]. 8 281 47.347 T 19-04-2016 IPR022483 Peptidase T1A, proteasome beta-subunit, actinobacteria GO:0004298|GO:0005839|GO:0010498 UniPathway: UPA00997 AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 TIGRFAM TIGR03690 20S_bact_beta: proteasome, beta subunit 50 275 7.4E-102 T 19-04-2016 IPR022483 Peptidase T1A, proteasome beta-subunit, actinobacteria GO:0004298|GO:0005839|GO:0010498 UniPathway: UPA00997 AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 PANTHER PTHR11599 7 280 1.6E-100 T 19-04-2016 AMED_4894 19174a1869eae7a6c3c90a059b0ada10 284 PANTHER PTHR11599:SF58 7 280 1.6E-100 T 19-04-2016 AMED_4278 354b89c9db50ac0d1c7adeac8062106d 296 Pfam PF00535 Glycosyl transferase family 2 5 104 6.5E-19 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_4278 354b89c9db50ac0d1c7adeac8062106d 296 SUPERFAMILY SSF53448 2 233 6.94E-40 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4278 354b89c9db50ac0d1c7adeac8062106d 296 Gene3D G3DSA:3.90.550.10 3 232 6.7E-32 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_4278 354b89c9db50ac0d1c7adeac8062106d 296 PANTHER PTHR22916 1 242 9.3E-37 T 19-04-2016 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 PANTHER PTHR26402 2 226 1.6E-94 T 19-04-2016 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 SUPERFAMILY SSF52172 4 177 2.13E-42 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 PANTHER PTHR26402:SF50 2 226 1.6E-94 T 19-04-2016 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 2.4E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Gene3D G3DSA:1.10.10.10 133 227 1.6E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 SMART SM00862 150 226 3.3E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Gene3D G3DSA:3.40.50.2300 3 124 1.8E-42 T 19-04-2016 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 Pfam PF00072 Response regulator receiver domain 4 112 5.6E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3014 b51fd40a55f71ec6ed3ecb66e30fa14a 229 SMART SM00448 2 112 1.4E-44 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0952 e12e52edbbe2efde22ba8951856c7541 187 PANTHER PTHR10204 4 177 7.9E-14 T 19-04-2016 AMED_0952 e12e52edbbe2efde22ba8951856c7541 187 Gene3D G3DSA:3.40.50.360 7 178 1.2E-18 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_0952 e12e52edbbe2efde22ba8951856c7541 187 SUPERFAMILY SSF52218 6 180 3.88E-25 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_0952 e12e52edbbe2efde22ba8951856c7541 187 Pfam PF03358 NADPH-dependent FMN reductase 7 149 2.6E-14 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_0952 e12e52edbbe2efde22ba8951856c7541 187 PANTHER PTHR10204:SF5 4 177 7.9E-14 T 19-04-2016 AMED_8473 3113cbf0a15846b30912c56a833166e0 268 SUPERFAMILY SSF75217 97 266 2.09E-38 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_8473 3113cbf0a15846b30912c56a833166e0 268 PANTHER PTHR12029 1 266 1.6E-87 T 19-04-2016 AMED_8473 3113cbf0a15846b30912c56a833166e0 268 PANTHER PTHR12029:SF52 1 266 1.6E-87 T 19-04-2016 AMED_8473 3113cbf0a15846b30912c56a833166e0 268 SUPERFAMILY SSF55315 4 105 1.37E-11 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_8473 3113cbf0a15846b30912c56a833166e0 268 Pfam PF00588 SpoU rRNA Methylase family 121 262 4.0E-29 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_8473 3113cbf0a15846b30912c56a833166e0 268 Gene3D G3DSA:3.40.1280.10 120 266 1.8E-45 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_8473 3113cbf0a15846b30912c56a833166e0 268 Gene3D G3DSA:3.30.1330.30 6 105 3.4E-10 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 PANTHER PTHR24023:SF593 248 426 2.8E-12 T 19-04-2016 AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 PANTHER PTHR24023 248 426 2.8E-12 T 19-04-2016 AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 SUPERFAMILY SSF89796 235 437 2.22E-47 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 Pfam PF02515 CoA-transferase family III 59 210 3.2E-6 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 Pfam PF02515 CoA-transferase family III 237 448 4.4E-38 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.40.50.10540 235 436 5.6E-53 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.40.50.10540 55 114 1.5E-8 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.40.50.10540 171 209 1.5E-8 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 Gene3D G3DSA:3.40.50.10540 471 486 5.6E-53 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3554 05434b8f156679e52c58fd3dff21fdfe 514 SUPERFAMILY SSF89796 51 229 6.41E-22 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 Gene3D G3DSA:3.30.390.10 7 180 1.4E-77 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 PANTHER PTHR13794:SF58 189 434 9.2E-175 T 19-04-2016 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 PANTHER PTHR13794:SF58 5 153 9.2E-175 T 19-04-2016 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 Pfam PF13378 Enolase C-terminal domain-like 204 417 1.4E-61 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 247 278 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 Gene3D G3DSA:3.20.20.120 184 428 3.2E-91 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 37 138 8.6E-11 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 PANTHER PTHR13794 189 434 9.2E-175 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 PANTHER PTHR13794 5 153 9.2E-175 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 SUPERFAMILY SSF51604 186 432 8.52E-73 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 SUPERFAMILY SSF54826 8 141 1.77E-34 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3087 c3c46807ea94367d8e93dc3057b9db2d 440 SMART SM00922 201 297 9.3E-30 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_8257 af86243e285585f78d05f6533544d261 318 PANTHER PTHR11695 15 318 9.8E-87 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8257 af86243e285585f78d05f6533544d261 318 SUPERFAMILY SSF51735 102 282 1.04E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8257 af86243e285585f78d05f6533544d261 318 SUPERFAMILY SSF50129 1 130 8.37E-31 T 19-04-2016 IPR011032 GroES-like AMED_8257 af86243e285585f78d05f6533544d261 318 Gene3D G3DSA:3.90.180.10 1 135 6.7E-36 T 19-04-2016 IPR011032 GroES-like AMED_8257 af86243e285585f78d05f6533544d261 318 Gene3D G3DSA:3.40.50.720 136 254 2.4E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8257 af86243e285585f78d05f6533544d261 318 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 68 8.8E-5 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_8257 af86243e285585f78d05f6533544d261 318 SMART SM00829 10 314 1.6E-31 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_8257 af86243e285585f78d05f6533544d261 318 Pfam PF00107 Zinc-binding dehydrogenase 141 259 1.1E-31 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_1136 780421af09448be03aa240a861319144 359 SUPERFAMILY SSF51735 142 287 5.91E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1136 780421af09448be03aa240a861319144 359 Pfam PF07885 Ion channel 47 126 4.6E-12 T 19-04-2016 IPR013099 Potassium channel domain AMED_1136 780421af09448be03aa240a861319144 359 PANTHER PTHR16254 19 308 2.4E-64 T 19-04-2016 AMED_1136 780421af09448be03aa240a861319144 359 Gene3D G3DSA:3.40.50.720 138 276 4.5E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1136 780421af09448be03aa240a861319144 359 PANTHER PTHR16254:SF21 19 308 2.4E-64 T 19-04-2016 AMED_1136 780421af09448be03aa240a861319144 359 SUPERFAMILY SSF81324 24 163 6.67E-19 T 19-04-2016 AMED_1136 780421af09448be03aa240a861319144 359 Gene3D G3DSA:1.10.287.70 41 130 3.7E-13 T 19-04-2016 AMED_1136 780421af09448be03aa240a861319144 359 Pfam PF02254 TrkA-N domain 147 264 1.1E-25 T 19-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 SUPERFAMILY SSF46689 8 77 2.41E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 PANTHER PTHR30055 2 186 6.5E-24 T 19-04-2016 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 Gene3D G3DSA:1.10.357.10 75 187 2.9E-21 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 Gene3D G3DSA:1.10.10.60 7 67 1.3E-24 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 SUPERFAMILY SSF48498 82 186 1.67E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 2.8E-20 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7022 89a868cf8e200a6b38e8571c0bb59200 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 1.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5097 bd6586e035ea3e984a6e0d0b9ea87846 324 PANTHER PTHR32196:SF21 12 309 1.3E-46 T 19-04-2016 AMED_5097 bd6586e035ea3e984a6e0d0b9ea87846 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 305 7.5E-42 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_5097 bd6586e035ea3e984a6e0d0b9ea87846 324 PANTHER PTHR32196 12 309 1.3E-46 T 19-04-2016 AMED_0765 58d8dad797e62ff941532882d4fdc36b 314 SUPERFAMILY SSF46955 13 78 3.48E-12 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_0765 58d8dad797e62ff941532882d4fdc36b 314 Pfam PF13411 MerR HTH family regulatory protein 15 77 1.8E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0765 58d8dad797e62ff941532882d4fdc36b 314 Gene3D G3DSA:1.10.1660.10 15 86 1.1E-12 T 19-04-2016 AMED_0765 58d8dad797e62ff941532882d4fdc36b 314 SMART SM00422 12 81 6.3E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1493 301f4de092d24ac924c434de5e0962e6 120 Gene3D G3DSA:1.10.10.10 5 119 4.5E-38 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1493 301f4de092d24ac924c434de5e0962e6 120 PANTHER PTHR33204:SF8 1 119 1.6E-36 T 19-04-2016 AMED_1493 301f4de092d24ac924c434de5e0962e6 120 SUPERFAMILY SSF46785 17 116 7.44E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1493 301f4de092d24ac924c434de5e0962e6 120 PANTHER PTHR33204 1 119 1.6E-36 T 19-04-2016 AMED_1493 301f4de092d24ac924c434de5e0962e6 120 Pfam PF01638 HxlR-like helix-turn-helix 23 110 7.8E-28 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 Gene3D G3DSA:3.90.1150.10 353 459 3.6E-27 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 SUPERFAMILY SSF53383 40 459 4.08E-101 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 67 397 6.7E-41 T 19-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 Gene3D G3DSA:3.40.640.10 84 352 6.7E-80 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 PANTHER PTHR11999:SF70 47 460 4.8E-100 T 19-04-2016 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 74 93 2.8E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 113 132 2.8E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 338 353 2.8E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 381 400 2.8E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_3016 e214b1dd297df64d354fb469d25d04d0 462 PANTHER PTHR11999 47 460 4.8E-100 T 19-04-2016 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 SUPERFAMILY SSF51338 367 427 1.36E-25 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 SUPERFAMILY SSF51338 3 50 1.36E-25 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 PANTHER PTHR11647:SF70 17 427 7.9E-168 T 19-04-2016 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 ProSitePatterns PS00483 Dihydroorotase signature 2. 301 312 - T 19-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 Hamap MF_00220_B Dihydroorotase [pyrC]. 2 425 41.47 T 19-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 Pfam PF01979 Amidohydrolase family 47 420 3.6E-19 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 Gene3D G3DSA:2.30.40.10 4 65 7.3E-19 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 SUPERFAMILY SSF51556 51 366 1.16E-92 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 17 425 3.3E-141 T 19-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 Gene3D G3DSA:3.20.20.140 66 407 2.1E-100 T 19-04-2016 AMED_2747 57567bbbfbed7c541c9662941b752b2d 428 PANTHER PTHR11647 17 427 7.9E-168 T 19-04-2016 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF17137 Domain of unknown function (DUF5110) 966 1028 9.4E-9 T 19-04-2016 IPR033403 Domain of unknown function DUF5110 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF01055 Glycosyl hydrolases family 31 497 946 1.6E-80 T 19-04-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:2.60.120.260 293 422 4.0E-21 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 Gene3D G3DSA:2.60.120.260 142 269 4.3E-26 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF49785 291 419 5.59E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF51011 861 942 4.53E-19 T 19-04-2016 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF51445 507 859 6.62E-37 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 PANTHER PTHR22762 428 771 7.3E-93 T 19-04-2016 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 PANTHER PTHR22762 792 1038 7.3E-93 T 19-04-2016 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 SUPERFAMILY SSF49785 142 269 4.37E-20 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF16990 Carbohydrate binding module (family 35) 142 268 3.5E-11 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 PANTHER PTHR22762:SF89 428 771 7.3E-93 T 19-04-2016 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 PANTHER PTHR22762:SF89 792 1038 7.3E-93 T 19-04-2016 AMED_4552 9ac756262868ebed4dea8ad872e1c10b 1072 Pfam PF03422 Carbohydrate binding module (family 6) 301 420 2.8E-9 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 SUPERFAMILY SSF50475 1 118 9.53E-24 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 Gene3D G3DSA:2.30.110.10 1 79 2.9E-24 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 PANTHER PTHR30466 1 78 8.9E-17 T 19-04-2016 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 Pfam PF01613 Flavin reductase like domain 2 71 1.6E-16 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 PANTHER PTHR30466:SF1 1 78 8.9E-17 T 19-04-2016 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 SMART SM00903 1 118 3.6E-17 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_7130 108fea692b92e33325761b8cd1f58fda 121 Gene3D G3DSA:2.30.110.10 80 118 2.6E-4 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2453 0451a9491dd5939ee8ee380fef331437 280 PANTHER PTHR22769 24 220 2.0E-17 T 19-04-2016 AMED_2453 0451a9491dd5939ee8ee380fef331437 280 SUPERFAMILY SSF55811 10 147 1.16E-28 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_2453 0451a9491dd5939ee8ee380fef331437 280 Gene3D G3DSA:3.90.79.10 24 148 2.5E-27 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_2453 0451a9491dd5939ee8ee380fef331437 280 Gene3D G3DSA:3.40.50.1010 216 270 1.1E-5 T 19-04-2016 IPR029060 PIN domain-like AMED_2453 0451a9491dd5939ee8ee380fef331437 280 Pfam PF00293 NUDIX domain 24 135 3.0E-17 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_3883 8d31896fa302f297348c413b963ffe73 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 62 3.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3883 8d31896fa302f297348c413b963ffe73 198 Gene3D G3DSA:1.10.10.60 12 60 1.1E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3883 8d31896fa302f297348c413b963ffe73 198 Gene3D G3DSA:1.10.357.10 61 193 1.2E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3883 8d31896fa302f297348c413b963ffe73 198 SUPERFAMILY SSF46689 12 77 2.79E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3883 8d31896fa302f297348c413b963ffe73 198 PANTHER PTHR30055 5 193 5.4E-18 T 19-04-2016 AMED_3883 8d31896fa302f297348c413b963ffe73 198 PANTHER PTHR30055:SF10 5 193 5.4E-18 T 19-04-2016 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 SUPERFAMILY SSF47203 221 375 6.12E-22 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 111 8.1E-22 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 PANTHER PTHR10909 3 378 2.8E-115 T 19-04-2016 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 Gene3D G3DSA:1.10.540.10 3 111 8.5E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 Gene3D G3DSA:1.20.140.10 211 379 7.9E-33 T 19-04-2016 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 Gene3D G3DSA:2.40.110.10 114 210 1.2E-33 T 19-04-2016 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 221 373 2.1E-24 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 116 209 2.1E-22 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 PANTHER PTHR10909:SF229 3 378 2.8E-115 T 19-04-2016 AMED_7165 5d0468fa894399ed1c216ad6983f95eb 386 SUPERFAMILY SSF56645 5 234 1.31E-69 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_0540 2d79a286f5402f20e32cdd1425d4cf45 354 Gene3D G3DSA:3.40.50.970 35 242 2.0E-82 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0540 2d79a286f5402f20e32cdd1425d4cf45 354 SUPERFAMILY SSF52518 24 250 4.47E-79 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0540 2d79a286f5402f20e32cdd1425d4cf45 354 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 70 217 6.2E-30 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_0540 2d79a286f5402f20e32cdd1425d4cf45 354 PANTHER PTHR18968:SF89 19 338 1.2E-121 T 19-04-2016 AMED_0540 2d79a286f5402f20e32cdd1425d4cf45 354 PANTHER PTHR18968 19 338 1.2E-121 T 19-04-2016 AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 Gene3D G3DSA:3.40.50.720 8 173 4.4E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 Pfam PF10727 Rossmann-like domain 3 123 6.9E-47 T 19-04-2016 IPR019665 Putative oxidoreductase/dehydrogenase, Rossmann-like domain AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 Gene3D G3DSA:1.10.1040.20 176 272 1.0E-31 T 19-04-2016 IPR018931 Domain of unknown function DUF2520 AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 SUPERFAMILY SSF51735 9 173 7.71E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 PANTHER PTHR40459:SF1 1 272 1.2E-76 T 19-04-2016 AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 PANTHER PTHR40459 1 272 1.2E-76 T 19-04-2016 AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 Pfam PF10728 Domain of unknown function (DUF2520) 146 269 4.4E-40 T 19-04-2016 IPR018931 Domain of unknown function DUF2520 AMED_8739 62dcc6b05739e3cae4f3f9a853968838 301 SUPERFAMILY SSF48179 176 272 1.77E-25 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_5853 3b6597ca5506af4a5931e2e761bcb432 131 PANTHER PTHR38445 1 121 3.9E-25 T 19-04-2016 AMED_5853 3b6597ca5506af4a5931e2e761bcb432 131 PANTHER PTHR38445:SF2 1 121 3.9E-25 T 19-04-2016 AMED_5853 3b6597ca5506af4a5931e2e761bcb432 131 SUPERFAMILY SSF46785 8 80 8.33E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5853 3b6597ca5506af4a5931e2e761bcb432 131 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 1.1E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5853 3b6597ca5506af4a5931e2e761bcb432 131 Gene3D G3DSA:1.10.10.10 6 78 7.4E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5853 3b6597ca5506af4a5931e2e761bcb432 131 SMART SM00345 18 77 5.6E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_3742 8183a3505a9cca49dcc2c2f85d0713ed 329 Gene3D G3DSA:1.10.3720.10 97 318 2.3E-11 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3742 8183a3505a9cca49dcc2c2f85d0713ed 329 SUPERFAMILY SSF161098 97 309 8.72E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3742 8183a3505a9cca49dcc2c2f85d0713ed 329 PANTHER PTHR30465:SF55 2 327 3.0E-111 T 19-04-2016 AMED_3742 8183a3505a9cca49dcc2c2f85d0713ed 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 326 1.0E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3742 8183a3505a9cca49dcc2c2f85d0713ed 329 PANTHER PTHR30465 2 327 3.0E-111 T 19-04-2016 AMED_2354 0dd8d52c98194853e79334171fb16b18 174 SUPERFAMILY SSF55729 16 173 5.66E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2354 0dd8d52c98194853e79334171fb16b18 174 Gene3D G3DSA:3.40.630.30 11 147 2.0E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2354 0dd8d52c98194853e79334171fb16b18 174 Pfam PF00583 Acetyltransferase (GNAT) family 59 141 3.2E-9 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8194 0009b4657292a603c9c378a152b1aba6 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 308 1.5E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8194 0009b4657292a603c9c378a152b1aba6 309 PANTHER PTHR30465:SF0 1 308 5.9E-95 T 19-04-2016 AMED_8194 0009b4657292a603c9c378a152b1aba6 309 SUPERFAMILY SSF161098 91 295 2.62E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8194 0009b4657292a603c9c378a152b1aba6 309 PANTHER PTHR30465 1 308 5.9E-95 T 19-04-2016 AMED_8194 0009b4657292a603c9c378a152b1aba6 309 Gene3D G3DSA:1.10.3720.10 91 305 1.2E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 PANTHER PTHR10242 65 252 3.2E-41 T 19-04-2016 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 PANTHER PTHR10242 271 459 3.2E-41 T 19-04-2016 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.10.60 145 191 6.8E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Pfam PF02805 Metal binding domain of Ada 15 78 2.4E-28 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 SMART SM00342 107 190 2.3E-19 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 SMART SM01009 209 324 3.4E-52 T 19-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Pfam PF06029 AlkA N-terminal domain 210 324 2.2E-36 T 19-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF55945 210 305 2.35E-27 T 19-04-2016 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 PANTHER PTHR10242:SF3 65 252 3.2E-41 T 19-04-2016 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 PANTHER PTHR10242:SF3 271 459 3.2E-41 T 19-04-2016 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Pfam PF12833 Helix-turn-helix domain 113 190 1.8E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:3.40.10.10 10 90 2.0E-33 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 144 186 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:3.30.310.20 209 324 1.6E-39 T 19-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.10.60 91 144 8.4E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.1670.10 417 459 3.9E-7 T 19-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF46689 144 191 3.32E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF48150 315 461 1.75E-17 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 Gene3D G3DSA:1.10.340.30 350 415 3.0E-9 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_8048 ff07f2a85a69e2cdfe4519eaa5b55229 479 SUPERFAMILY SSF57884 8 92 7.59E-31 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 Gene3D G3DSA:3.30.465.10 70 184 1.2E-6 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 Pfam PF01565 FAD binding domain 13 147 5.0E-17 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 PANTHER PTHR11748 5 494 2.4E-90 T 19-04-2016 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 SUPERFAMILY SSF56176 5 185 2.66E-32 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 Pfam PF08031 Berberine and berberine like 442 494 3.0E-17 T 19-04-2016 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 PANTHER PTHR11748:SF33 5 494 2.4E-90 T 19-04-2016 AMED_7341 a461b80e0418219b9dcff3d514fd094f 497 Gene3D G3DSA:3.30.43.10 17 68 6.5E-4 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 SUPERFAMILY SSF53901 176 323 1.32E-21 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 SUPERFAMILY SSF53901 18 118 1.32E-21 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 PIRSF PIRSF000429 1 374 1.9E-18 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 Gene3D G3DSA:3.40.47.10 212 283 8.1E-5 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 Gene3D G3DSA:3.40.47.10 16 111 6.7E-17 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 Gene3D G3DSA:3.40.47.10 189 211 6.7E-17 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 PANTHER PTHR18919 1 379 2.8E-75 T 19-04-2016 AMED_3867 8f08f65c4406509fe9e7af04f06bbc94 381 PANTHER PTHR18919:SF108 1 379 2.8E-75 T 19-04-2016 AMED_3108 f053c51e3038b21721e68ba75223f43e 385 Gene3D G3DSA:1.20.1250.20 9 179 2.7E-8 T 19-04-2016 AMED_3108 f053c51e3038b21721e68ba75223f43e 385 Gene3D G3DSA:1.20.1250.20 203 372 4.6E-4 T 19-04-2016 AMED_3108 f053c51e3038b21721e68ba75223f43e 385 SUPERFAMILY SSF103473 12 373 4.05E-17 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8404 839152796f5a326483c443f9c1d9ab31 405 SUPERFAMILY SSF56322 52 399 1.96E-88 T 19-04-2016 IPR005801 ADC synthase GO:0009058 AMED_8404 839152796f5a326483c443f9c1d9ab31 405 PANTHER PTHR11236 128 402 1.4E-121 T 19-04-2016 AMED_8404 839152796f5a326483c443f9c1d9ab31 405 PANTHER PTHR11236:SF21 128 402 1.4E-121 T 19-04-2016 AMED_8404 839152796f5a326483c443f9c1d9ab31 405 Pfam PF00425 chorismate binding enzyme 138 390 1.7E-72 T 19-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal AMED_8404 839152796f5a326483c443f9c1d9ab31 405 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 136 397 2.4E-84 T 19-04-2016 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AMED_8404 839152796f5a326483c443f9c1d9ab31 405 Gene3D G3DSA:3.60.120.10 117 400 1.5E-89 T 19-04-2016 IPR005801 ADC synthase GO:0009058 AMED_5734 66697b3a9a73ca813ab899ed7d61e329 146 Pfam PF03779 SPW repeat 84 129 3.6E-6 T 19-04-2016 IPR005530 SPW repeat AMED_2997 ba1b2581bc078956328625f6a2c29228 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 4.6E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2997 ba1b2581bc078956328625f6a2c29228 221 Gene3D G3DSA:1.10.357.10 2 187 2.0E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2997 ba1b2581bc078956328625f6a2c29228 221 SUPERFAMILY SSF46689 2 78 1.75E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2997 ba1b2581bc078956328625f6a2c29228 221 PANTHER PTHR30055 1 166 4.4E-21 T 19-04-2016 AMED_2997 ba1b2581bc078956328625f6a2c29228 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 5.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2997 ba1b2581bc078956328625f6a2c29228 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 5.5E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 PANTHER PTHR11751 12 98 1.2E-22 T 19-04-2016 AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 Gene3D G3DSA:1.20.120.530 77 213 1.7E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 SMART SM00345 14 72 5.3E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 Gene3D G3DSA:1.10.10.10 3 71 9.2E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 71 1.5E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 Pfam PF07729 FCD domain 83 204 1.9E-22 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 SMART SM00895 82 206 4.7E-20 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 SUPERFAMILY SSF48008 78 213 2.09E-24 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7555 015e8f1038b5ff12cb5286e33cd82516 215 SUPERFAMILY SSF46785 5 76 7.31E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4470 4e5e162d7ad2612a5c2adf17dba0e46d 542 PANTHER PTHR14202:SF1 148 190 1.5E-20 T 19-04-2016 AMED_4470 4e5e162d7ad2612a5c2adf17dba0e46d 542 PANTHER PTHR14202:SF1 16 132 1.5E-20 T 19-04-2016 AMED_4470 4e5e162d7ad2612a5c2adf17dba0e46d 542 PANTHER PTHR14202 258 479 1.5E-20 T 19-04-2016 AMED_4470 4e5e162d7ad2612a5c2adf17dba0e46d 542 PANTHER PTHR14202 16 132 1.5E-20 T 19-04-2016 AMED_4470 4e5e162d7ad2612a5c2adf17dba0e46d 542 PANTHER PTHR14202 148 190 1.5E-20 T 19-04-2016 AMED_4470 4e5e162d7ad2612a5c2adf17dba0e46d 542 PANTHER PTHR14202:SF1 258 479 1.5E-20 T 19-04-2016 AMED_3788 d17d0e7e1815f18b27f2497409fdf2ba 375 PANTHER PTHR30149:SF0 2 373 1.6E-198 T 19-04-2016 AMED_3788 d17d0e7e1815f18b27f2497409fdf2ba 375 PIRSF PIRSF005622 1 367 2.6E-159 T 19-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 AMED_3788 d17d0e7e1815f18b27f2497409fdf2ba 375 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 364 6.9E-151 T 19-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 AMED_3788 d17d0e7e1815f18b27f2497409fdf2ba 375 PANTHER PTHR30149 2 373 1.6E-198 T 19-04-2016 AMED_3788 d17d0e7e1815f18b27f2497409fdf2ba 375 Pfam PF01924 Hydrogenase formation hypA family 12 361 2.7E-155 T 19-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 217 297 2.2E-14 T 19-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PANTHER PTHR11557:SF0 1 304 3.2E-108 T 19-04-2016 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 Gene3D G3DSA:3.40.190.10 1 99 8.1E-35 T 19-04-2016 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 SUPERFAMILY SSF53850 1 205 5.55E-65 T 19-04-2016 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 2 297 9.8E-87 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PIRSF PIRSF001438 1 309 1.5E-103 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 113 130 4.1E-23 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 132 149 4.1E-23 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 65 84 4.1E-23 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PRINTS PR00151 Porphobilinogen deaminase signature 220 237 4.1E-23 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 2 201 4.9E-67 T 19-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 Gene3D G3DSA:3.30.160.40 211 303 4.0E-15 T 19-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 1 299 32.37 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 221 237 - T 19-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 PANTHER PTHR11557 1 304 3.2E-108 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 Gene3D G3DSA:3.40.190.10 100 188 7.2E-35 T 19-04-2016 AMED_0481 a5b36b1d41e56b1441f1d63ea541418a 309 SUPERFAMILY SSF54782 210 303 1.01E-13 T 19-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_8009 03afaf76ce7dcea1a09803eb79b3512b 508 PIRSF PIRSF006060 8 506 1.2E-87 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_8009 03afaf76ce7dcea1a09803eb79b3512b 508 PANTHER PTHR11785 23 220 1.4E-157 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_8009 03afaf76ce7dcea1a09803eb79b3512b 508 PANTHER PTHR11785 248 489 1.4E-157 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_8009 03afaf76ce7dcea1a09803eb79b3512b 508 PANTHER PTHR11785:SF342 23 220 1.4E-157 T 19-04-2016 AMED_8009 03afaf76ce7dcea1a09803eb79b3512b 508 PANTHER PTHR11785:SF342 248 489 1.4E-157 T 19-04-2016 AMED_8009 03afaf76ce7dcea1a09803eb79b3512b 508 Pfam PF13520 Amino acid permease 30 463 8.1E-50 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 SUPERFAMILY SSF56059 97 303 1.27E-43 T 19-04-2016 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.30.1490.20 108 182 5.1E-15 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.30.470.20 183 311 1.0E-39 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.30.470.20 86 104 1.0E-39 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 PANTHER PTHR23132 6 314 1.4E-67 T 19-04-2016 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 SUPERFAMILY SSF52440 5 97 6.91E-22 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 312 28.078 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Pfam PF01820 D-ala D-ala ligase N-terminus 6 86 3.4E-16 T 19-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Pfam PF07478 D-ala D-ala ligase C-terminus 104 308 2.8E-42 T 19-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 254 282 - T 19-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 Gene3D G3DSA:3.40.50.20 4 85 1.0E-21 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_9358 8eb09193c67a8046defdb86f2cd735af 314 PANTHER PTHR23132:SF0 6 314 1.4E-67 T 19-04-2016 AMED_3055 69c36de5a4acfd3491edacd9d9c9fec0 405 PANTHER PTHR21021:SF22 91 390 6.1E-42 T 19-04-2016 AMED_3055 69c36de5a4acfd3491edacd9d9c9fec0 405 PANTHER PTHR21021 91 390 6.1E-42 T 19-04-2016 AMED_3055 69c36de5a4acfd3491edacd9d9c9fec0 405 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 193 381 4.2E-29 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3055 69c36de5a4acfd3491edacd9d9c9fec0 405 SUPERFAMILY SSF81606 184 379 2.88E-10 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3055 69c36de5a4acfd3491edacd9d9c9fec0 405 SMART SM00331 166 381 2.0E-10 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3422 15e92cf11fdce12be6c6465a38f48f1e 402 Gene3D G3DSA:1.20.1250.20 16 184 6.4E-13 T 19-04-2016 AMED_3422 15e92cf11fdce12be6c6465a38f48f1e 402 Gene3D G3DSA:1.20.1250.20 211 388 2.5E-13 T 19-04-2016 AMED_3422 15e92cf11fdce12be6c6465a38f48f1e 402 PANTHER PTHR23513 9 399 5.8E-38 T 19-04-2016 AMED_3422 15e92cf11fdce12be6c6465a38f48f1e 402 SUPERFAMILY SSF103473 19 390 2.09E-34 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3422 15e92cf11fdce12be6c6465a38f48f1e 402 Pfam PF05977 Transmembrane secretion effector 25 386 1.6E-21 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_1277 de524b23c0ed08c26935ff19f898e911 524 Pfam PF07730 Histidine kinase 182 246 2.8E-10 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_1277 de524b23c0ed08c26935ff19f898e911 524 PANTHER PTHR24421:SF26 78 389 1.6E-77 T 19-04-2016 AMED_1277 de524b23c0ed08c26935ff19f898e911 524 PANTHER PTHR24421 78 389 1.6E-77 T 19-04-2016 AMED_1277 de524b23c0ed08c26935ff19f898e911 524 SUPERFAMILY SSF55874 280 373 3.01E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 SUPERFAMILY SSF53474 8 374 3.91E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 Gene3D G3DSA:3.40.50.1820 124 374 3.2E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 PANTHER PTHR17630:SF32 305 353 1.1E-30 T 19-04-2016 AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 Pfam PF00326 Prolyl oligopeptidase family 204 333 9.0E-9 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 Gene3D G3DSA:1.20.1440.110 37 118 7.6E-11 T 19-04-2016 AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 PANTHER PTHR17630 305 353 1.1E-30 T 19-04-2016 AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 PANTHER PTHR17630:SF32 2 259 1.1E-30 T 19-04-2016 AMED_5088 13f21e5d181dd35f0a0e431ebd6d5e96 376 PANTHER PTHR17630 2 259 1.1E-30 T 19-04-2016 AMED_5437 7de5f4367d692bdf8b5a3b7df3776c7f 107 SUPERFAMILY SSF54909 2 106 2.68E-39 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5437 7de5f4367d692bdf8b5a3b7df3776c7f 107 Gene3D G3DSA:3.30.70.1090 2 106 6.8E-43 T 19-04-2016 IPR006765 Polyketide synthesis cyclase GO:0030639 AMED_5437 7de5f4367d692bdf8b5a3b7df3776c7f 107 ProDom PD012644 CYCLASE POLYKETIDE II SYNTHESIS ORF SYNTHASE JADI BIOSYNTHESIS ANTIBIOTIC CYCLASE-LIKE 3 106 1.0E-30 T 19-04-2016 IPR006765 Polyketide synthesis cyclase GO:0030639 AMED_5437 7de5f4367d692bdf8b5a3b7df3776c7f 107 Pfam PF04673 Polyketide synthesis cyclase 3 104 1.4E-41 T 19-04-2016 IPR006765 Polyketide synthesis cyclase GO:0030639 AMED_3299 e6a641c4e4663f06a52852c80ca1f248 393 PANTHER PTHR37539:SF2 1 392 3.0E-149 T 19-04-2016 AMED_3299 e6a641c4e4663f06a52852c80ca1f248 393 PANTHER PTHR37539 1 392 3.0E-149 T 19-04-2016 AMED_3299 e6a641c4e4663f06a52852c80ca1f248 393 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 114 336 8.8E-19 T 19-04-2016 IPR018713 Domain of unknown function DUF2236 AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 174 7.3E-44 T 19-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 SUPERFAMILY SSF53335 2 175 9.87E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 Pfam PF03602 Conserved hypothetical protein 95 1 173 7.3E-49 T 19-04-2016 AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 PIRSF PIRSF004553 1 180 7.8E-53 T 19-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 PANTHER PTHR18895:SF60 17 173 8.9E-37 T 19-04-2016 AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 Gene3D G3DSA:3.40.50.150 1 178 1.7E-55 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 111 117 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMED_1788 b265a0e7a7c532a9cd5da8719c15f9bc 182 PANTHER PTHR18895 17 173 8.9E-37 T 19-04-2016 AMED_0075 cb340f74d49bec93c40815fb0382358a 403 PANTHER PTHR33055 6 164 1.2E-49 T 19-04-2016 AMED_0075 cb340f74d49bec93c40815fb0382358a 403 Pfam PF02371 Transposase IS116/IS110/IS902 family 271 356 7.4E-21 T 19-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMED_0075 cb340f74d49bec93c40815fb0382358a 403 PANTHER PTHR33055:SF3 210 391 1.2E-49 T 19-04-2016 AMED_0075 cb340f74d49bec93c40815fb0382358a 403 PANTHER PTHR33055:SF3 6 164 1.2E-49 T 19-04-2016 AMED_0075 cb340f74d49bec93c40815fb0382358a 403 PANTHER PTHR33055 210 391 1.2E-49 T 19-04-2016 AMED_0075 cb340f74d49bec93c40815fb0382358a 403 Pfam PF01548 Transposase 9 163 8.2E-50 T 19-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMED_5856 ab2234fd2e06a9a69dc0ea6b1282b63a 409 Pfam PF02720 Domain of unknown function (DUF222) 20 322 9.4E-39 T 19-04-2016 IPR003870 Domain of unknown function DUF222 AMED_5856 ab2234fd2e06a9a69dc0ea6b1282b63a 409 SMART SM00507 313 365 1.6E-11 T 19-04-2016 IPR003615 HNH nuclease AMED_5856 ab2234fd2e06a9a69dc0ea6b1282b63a 409 Pfam PF01844 HNH endonuclease 330 369 5.5E-6 T 19-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AMED_6482 efccad2d335c0d8e872c4aa0b0b1c029 552 SUPERFAMILY SSF49785 412 551 1.63E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6482 efccad2d335c0d8e872c4aa0b0b1c029 552 SMART SM00231 407 551 1.3E-6 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_6482 efccad2d335c0d8e872c4aa0b0b1c029 552 Pfam PF00754 F5/8 type C domain 425 546 2.1E-18 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_6482 efccad2d335c0d8e872c4aa0b0b1c029 552 Gene3D G3DSA:2.60.120.260 413 551 5.6E-26 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 PANTHER PTHR24423 361 547 7.9E-27 T 19-04-2016 AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 Gene3D G3DSA:3.30.565.10 456 564 6.4E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 SMART SM00304 270 339 4.4E-5 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 PANTHER PTHR24423 319 335 7.9E-27 T 19-04-2016 AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 562 2.8E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 SUPERFAMILY SSF55874 455 564 3.93E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 Pfam PF00672 HAMP domain 252 335 2.0E-12 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 SMART SM00387 452 567 5.7E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 PANTHER PTHR24423:SF468 319 335 7.9E-27 T 19-04-2016 AMED_7469 0219e7a9fe085e580bba7c230720ccbc 731 PANTHER PTHR24423:SF468 361 547 7.9E-27 T 19-04-2016 AMED_6747 eb62ce9a392d3ab1bd06650fc19529e8 614 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 69 224 7.0E-32 T 19-04-2016 AMED_6747 eb62ce9a392d3ab1bd06650fc19529e8 614 PANTHER PTHR33908:SF3 1 446 7.7E-68 T 19-04-2016 AMED_6747 eb62ce9a392d3ab1bd06650fc19529e8 614 PANTHER PTHR33908 1 446 7.7E-68 T 19-04-2016 AMED_1757 fc5eb14deb74f29da51ac4fecdd81db7 811 Pfam PF00656 Caspase domain 1 196 1.5E-9 T 19-04-2016 AMED_1757 fc5eb14deb74f29da51ac4fecdd81db7 811 Gene3D G3DSA:3.40.50.1460 4 78 7.2E-4 T 19-04-2016 IPR029030 Caspase-like domain AMED_1757 fc5eb14deb74f29da51ac4fecdd81db7 811 SUPERFAMILY SSF52129 1 196 1.33E-16 T 19-04-2016 IPR029030 Caspase-like domain AMED_1989 4128ac06afb42a558893769d10300279 2084 Gene3D G3DSA:3.90.182.10 1126 1292 2.3E-32 T 19-04-2016 IPR011658 PA14 domain AMED_1989 4128ac06afb42a558893769d10300279 2084 Gene3D G3DSA:3.90.182.10 601 856 2.5E-38 T 19-04-2016 IPR011658 PA14 domain AMED_1989 4128ac06afb42a558893769d10300279 2084 SUPERFAMILY SSF56988 608 785 2.48E-29 T 19-04-2016 AMED_1989 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1846 1912 1.6E-11 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_1989 4128ac06afb42a558893769d10300279 2084 SUPERFAMILY SSF56988 1127 1273 7.19E-23 T 19-04-2016 AMED_1989 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1685 1714 0.0027 T 19-04-2016 IPR006530 YD repeat AMED_1989 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1034 1062 0.001 T 19-04-2016 IPR006530 YD repeat AMED_1989 4128ac06afb42a558893769d10300279 2084 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1043 1082 2.1E-4 T 19-04-2016 IPR006530 YD repeat AMED_1989 4128ac06afb42a558893769d10300279 2084 Pfam PF07691 PA14 domain 1128 1261 2.5E-18 T 19-04-2016 IPR011658 PA14 domain AMED_1989 4128ac06afb42a558893769d10300279 2084 Pfam PF07691 PA14 domain 609 748 2.5E-18 T 19-04-2016 IPR011658 PA14 domain AMED_1989 4128ac06afb42a558893769d10300279 2084 SMART SM00758 607 751 1.7E-14 T 19-04-2016 IPR011658 PA14 domain AMED_1989 4128ac06afb42a558893769d10300279 2084 SMART SM00758 1126 1268 1.4E-20 T 19-04-2016 IPR011658 PA14 domain AMED_2235 cd2645582de119915375bd9bf212048b 225 Pfam PF00089 Trypsin 27 219 1.1E-22 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2235 cd2645582de119915375bd9bf212048b 225 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 172 184 1.1E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2235 cd2645582de119915375bd9bf212048b 225 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 95 109 1.1E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2235 cd2645582de119915375bd9bf212048b 225 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 51 66 1.1E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2235 cd2645582de119915375bd9bf212048b 225 Gene3D G3DSA:2.40.10.10 22 63 1.7E-11 T 19-04-2016 AMED_2235 cd2645582de119915375bd9bf212048b 225 Gene3D G3DSA:2.40.10.10 64 223 2.3E-26 T 19-04-2016 AMED_2235 cd2645582de119915375bd9bf212048b 225 SMART SM00020 21 219 2.9E-9 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2235 cd2645582de119915375bd9bf212048b 225 PANTHER PTHR24256:SF149 14 222 1.3E-16 T 19-04-2016 AMED_2235 cd2645582de119915375bd9bf212048b 225 PANTHER PTHR24256 14 222 1.3E-16 T 19-04-2016 AMED_2235 cd2645582de119915375bd9bf212048b 225 SUPERFAMILY SSF50494 6 224 1.18E-34 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_1574 1b181d5011559646c8e48728c57653d1 446 TIGRFAM TIGR01751 crot-CoA-red: crotonyl-CoA carboxylase/reductase 32 429 3.0E-185 T 19-04-2016 IPR010085 Crotonyl-CoA reductase GO:0043880 KEGG: 00650+1.3.1.86 AMED_1574 1b181d5011559646c8e48728c57653d1 446 SUPERFAMILY SSF50129 51 231 8.99E-28 T 19-04-2016 IPR011032 GroES-like AMED_1574 1b181d5011559646c8e48728c57653d1 446 Gene3D G3DSA:3.90.180.10 49 232 2.3E-31 T 19-04-2016 IPR011032 GroES-like AMED_1574 1b181d5011559646c8e48728c57653d1 446 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 116 191 1.6E-5 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1574 1b181d5011559646c8e48728c57653d1 446 Pfam PF00107 Zinc-binding dehydrogenase 237 381 1.3E-36 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695 108 146 5.6E-89 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695 292 428 5.6E-89 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695 55 90 5.6E-89 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695 164 275 5.6E-89 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1574 1b181d5011559646c8e48728c57653d1 446 Gene3D G3DSA:3.40.50.720 233 365 8.8E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695:SF294 108 146 5.6E-89 T 19-04-2016 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695:SF294 292 428 5.6E-89 T 19-04-2016 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695:SF294 55 90 5.6E-89 T 19-04-2016 AMED_1574 1b181d5011559646c8e48728c57653d1 446 PANTHER PTHR11695:SF294 164 275 5.6E-89 T 19-04-2016 AMED_1574 1b181d5011559646c8e48728c57653d1 446 SUPERFAMILY SSF51735 199 394 2.0E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1574 1b181d5011559646c8e48728c57653d1 446 SMART SM00829 50 416 3.8E-9 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4711 52b455f9fd2dfec99f6c7218e3d67088 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 4.4E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4711 52b455f9fd2dfec99f6c7218e3d67088 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.0E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4711 52b455f9fd2dfec99f6c7218e3d67088 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.0E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4711 52b455f9fd2dfec99f6c7218e3d67088 177 Gene3D G3DSA:1.10.357.10 3 130 4.4E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4711 52b455f9fd2dfec99f6c7218e3d67088 177 SUPERFAMILY SSF46689 3 74 9.48E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4711 52b455f9fd2dfec99f6c7218e3d67088 177 PANTHER PTHR30328 3 118 5.2E-21 T 19-04-2016 AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 SUPERFAMILY SSF53901 166 391 9.61E-15 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 17 52 4.0E-9 T 19-04-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 SUPERFAMILY SSF50249 2 125 7.37E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 Gene3D G3DSA:3.40.47.10 368 388 3.5E-9 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 Gene3D G3DSA:3.40.47.10 167 271 3.5E-9 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 PANTHER PTHR18919 159 546 2.5E-54 T 19-04-2016 AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 58 119 3.7E-14 T 19-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 PANTHER PTHR18919:SF108 159 546 2.5E-54 T 19-04-2016 AMED_7180 23cd14b65e6799bd78d0c1bc039a23fd 546 SUPERFAMILY SSF53901 425 535 9.36E-14 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1093 ada55aaef824de02eee404429e97e267 279 Gene3D G3DSA:3.90.1530.10 82 144 3.7E-6 T 19-04-2016 AMED_1093 ada55aaef824de02eee404429e97e267 279 Pfam PF02195 ParB-like nuclease domain 90 145 8.6E-5 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_1093 ada55aaef824de02eee404429e97e267 279 SUPERFAMILY SSF110849 85 144 6.8E-8 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_9002 ee433bf79362f53e778a9fca40f34602 221 PANTHER PTHR10010 1 213 3.3E-50 T 19-04-2016 AMED_9002 ee433bf79362f53e778a9fca40f34602 221 PANTHER PTHR10010:SF14 1 213 3.3E-50 T 19-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMED_9002 ee433bf79362f53e778a9fca40f34602 221 Gene3D G3DSA:1.20.58.220 117 212 1.6E-18 T 19-04-2016 AMED_9002 ee433bf79362f53e778a9fca40f34602 221 SUPERFAMILY SSF109755 2 214 5.23E-57 T 19-04-2016 AMED_9002 ee433bf79362f53e778a9fca40f34602 221 Pfam PF01895 PhoU domain 122 203 3.1E-11 T 19-04-2016 IPR026022 PhoU domain AMED_9002 ee433bf79362f53e778a9fca40f34602 221 Pfam PF01895 PhoU domain 18 103 7.1E-16 T 19-04-2016 IPR026022 PhoU domain AMED_9002 ee433bf79362f53e778a9fca40f34602 221 Gene3D G3DSA:1.20.58.220 1 106 2.5E-26 T 19-04-2016 AMED_9002 ee433bf79362f53e778a9fca40f34602 221 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 4 211 1.2E-55 T 19-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMED_9002 ee433bf79362f53e778a9fca40f34602 221 PIRSF PIRSF003107 1 215 1.1E-54 T 19-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMED_0587 1ebe0857ae29b5d083b1a7f01988d050 130 Gene3D G3DSA:3.10.129.10 1 128 7.2E-35 T 19-04-2016 IPR029069 HotDog domain AMED_0587 1ebe0857ae29b5d083b1a7f01988d050 130 PANTHER PTHR13078:SF52 1 126 7.3E-25 T 19-04-2016 AMED_0587 1ebe0857ae29b5d083b1a7f01988d050 130 PANTHER PTHR13078 1 126 7.3E-25 T 19-04-2016 AMED_0587 1ebe0857ae29b5d083b1a7f01988d050 130 PIRSF PIRSF018072 1 130 2.1E-50 T 19-04-2016 IPR016709 Uncharacterised protein family UPF0336 AMED_0587 1ebe0857ae29b5d083b1a7f01988d050 130 Pfam PF13452 N-terminal half of MaoC dehydratase 1 118 1.7E-31 T 19-04-2016 AMED_0587 1ebe0857ae29b5d083b1a7f01988d050 130 SUPERFAMILY SSF54637 1 128 1.45E-35 T 19-04-2016 IPR029069 HotDog domain AMED_8626 af1608fec6fb72cbe964ab4d0b797753 133 SMART SM00881 7 99 6.7E-26 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_8626 af1608fec6fb72cbe964ab4d0b797753 133 PANTHER PTHR33303 4 123 8.7E-42 T 19-04-2016 AMED_8626 af1608fec6fb72cbe964ab4d0b797753 133 Pfam PF13380 CoA binding domain 12 124 7.5E-40 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMED_8626 af1608fec6fb72cbe964ab4d0b797753 133 Gene3D G3DSA:3.40.50.720 4 127 7.9E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8626 af1608fec6fb72cbe964ab4d0b797753 133 SUPERFAMILY SSF51735 4 127 6.47E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 SMART SM00436 134 222 7.6E-43 T 19-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PANTHER PTHR11390:SF27 252 606 1.1E-261 T 19-04-2016 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 337 346 9.9E-36 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 528 542 9.9E-36 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 108 121 9.9E-36 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 416 432 9.9E-36 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 192 210 9.9E-36 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:3.40.50.140 20 164 4.3E-47 T 19-04-2016 IPR006171 Toprim domain AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 SMART SM00437 295 565 1.8E-119 T 19-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF01131 DNA topoisomerase 158 602 7.7E-121 T 19-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 SMART SM00493 20 134 7.3E-36 T 19-04-2016 IPR006171 Toprim domain AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PANTHER PTHR11390:SF27 19 228 1.1E-261 T 19-04-2016 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 707 780 7.3E-13 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 648 701 8.3E-9 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 785 838 1.2E-17 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF13368 Topoisomerase C-terminal repeat 852 904 7.9E-20 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 SUPERFAMILY SSF56712 20 606 3.4E-177 T 19-04-2016 IPR023405 DNA topoisomerase, type IA, core domain AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Hamap MF_00952 DNA topoisomerase 1 [topA]. 20 797 53.829 T 19-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PANTHER PTHR11390 19 228 1.1E-261 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 PANTHER PTHR11390 252 606 1.1E-261 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 22 678 1.7E-247 T 19-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Pfam PF01751 Toprim domain 22 143 3.2E-28 T 19-04-2016 IPR006171 Toprim domain AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:1.10.460.10 512 606 4.9E-49 T 19-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:1.10.460.10 165 212 4.9E-49 T 19-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 332 346 - T 19-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:2.70.20.10 364 511 6.7E-30 T 19-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMED_8794 4b4362c64b72a0043ae627d42038dc98 951 Gene3D G3DSA:2.70.20.10 215 361 1.3E-27 T 19-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 SMART SM00345 21 82 4.4E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 2.3E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 Gene3D G3DSA:1.20.120.530 98 231 2.6E-21 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 Gene3D G3DSA:1.10.10.10 14 84 6.5E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 SMART SM00895 103 224 6.0E-15 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 SUPERFAMILY SSF46785 11 85 1.35E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 PANTHER PTHR11751 19 119 3.5E-24 T 19-04-2016 AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 1.3E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 1.3E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 Pfam PF07729 FCD domain 104 223 2.7E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1821 8e70e7531d10b0c78a1b511626f0565b 234 SUPERFAMILY SSF48008 100 232 5.75E-23 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_2863 c81da40fd7294b978d5d06f9caf6d7b6 460 Pfam PF09594 Protein of unknown function (DUF2029) 169 417 1.7E-7 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 Gene3D G3DSA:3.40.50.2000 208 364 4.8E-5 T 19-04-2016 AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 PANTHER PTHR10859 426 591 1.6E-29 T 19-04-2016 AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 Gene3D G3DSA:3.90.550.10 443 674 3.2E-30 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 Pfam PF00535 Glycosyl transferase family 2 445 593 8.1E-23 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 SUPERFAMILY SSF53448 434 674 2.44E-35 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 SUPERFAMILY SSF53756 131 429 6.67E-21 T 19-04-2016 AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 SUPERFAMILY SSF53756 10 65 6.67E-21 T 19-04-2016 AMED_5107 bf026cf638ffbdce836d199d7f4e8b0e 857 Pfam PF00534 Glycosyl transferases group 1 237 408 2.6E-9 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_6536 7296ba902bf330662121f9cbda26730d 187 PANTHER PTHR34820 2 109 2.1E-26 T 19-04-2016 AMED_6536 7296ba902bf330662121f9cbda26730d 187 SUPERFAMILY SSF81296 26 120 4.9E-20 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_6536 7296ba902bf330662121f9cbda26730d 187 Gene3D G3DSA:2.60.40.1220 26 120 2.8E-23 T 19-04-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like AMED_6536 7296ba902bf330662121f9cbda26730d 187 PANTHER PTHR34820:SF2 2 109 2.1E-26 T 19-04-2016 AMED_6536 7296ba902bf330662121f9cbda26730d 187 Pfam PF04234 CopC domain 27 119 6.4E-21 T 19-04-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMED_0484 6954235837f16a6b7fbc7c73bc528849 268 Pfam PF12833 Helix-turn-helix domain 154 230 3.7E-13 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_0484 6954235837f16a6b7fbc7c73bc528849 268 SMART SM00342 148 231 1.2E-11 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_0484 6954235837f16a6b7fbc7c73bc528849 268 Gene3D G3DSA:1.10.10.60 134 186 1.8E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.20.20.70 386 738 4.2E-117 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 391 726 7.0E-61 T 19-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 SUPERFAMILY SSF51395 386 732 1.47E-111 T 19-04-2016 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 PANTHER PTHR22893 375 735 1.7E-218 T 19-04-2016 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 SUPERFAMILY SSF51905 2 147 1.27E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 SUPERFAMILY SSF51905 251 339 1.27E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 295 9.0E-7 T 19-04-2016 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 264 279 9.0E-7 T 19-04-2016 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 9.0E-7 T 19-04-2016 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 PANTHER PTHR22893:SF29 375 735 1.7E-218 T 19-04-2016 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 Pfam PF01494 FAD binding domain 128 323 9.0E-13 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.50.50.60 254 374 8.0E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.50.50.60 2 42 8.0E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8366 49f9bf5950be1fbbdd856f2061dd1a76 780 Gene3D G3DSA:3.50.50.60 96 163 8.0E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 21 208 5.6E-18 T 19-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 PANTHER PTHR10000 22 248 2.3E-51 T 19-04-2016 AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 Gene3D G3DSA:3.40.50.1000 93 242 1.5E-46 T 19-04-2016 IPR023214 HAD-like domain AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 SUPERFAMILY SSF56784 21 228 1.36E-26 T 19-04-2016 IPR023214 HAD-like domain AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 Pfam PF12710 haloacid dehalogenase-like hydrolase 22 207 3.2E-32 T 19-04-2016 AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 PANTHER PTHR10000:SF10 22 248 2.3E-51 T 19-04-2016 AMED_8807 3db22205cbf1ca54934e11add8a4d5b3 276 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 21 219 2.0E-57 T 19-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial AMED_1730 c601d30edd80aab04817d3d1e060aa01 239 PANTHER PTHR10434 14 234 3.4E-46 T 19-04-2016 AMED_1730 c601d30edd80aab04817d3d1e060aa01 239 Gene3D G3DSA:3.40.1130.10 37 227 6.3E-23 T 19-04-2016 AMED_1730 c601d30edd80aab04817d3d1e060aa01 239 SUPERFAMILY SSF69593 22 226 1.03E-42 T 19-04-2016 AMED_1730 c601d30edd80aab04817d3d1e060aa01 239 PANTHER PTHR10434:SF21 14 234 3.4E-46 T 19-04-2016 AMED_1730 c601d30edd80aab04817d3d1e060aa01 239 SMART SM00563 46 164 5.3E-27 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_1730 c601d30edd80aab04817d3d1e060aa01 239 Pfam PF01553 Acyltransferase 36 160 1.5E-22 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 SUPERFAMILY SSF46689 3 69 2.44E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 Gene3D G3DSA:1.10.357.10 3 167 1.7E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 1.7E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 PANTHER PTHR30328 1 184 9.7E-44 T 19-04-2016 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 PANTHER PTHR30328:SF4 1 184 9.7E-44 T 19-04-2016 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 5.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 5.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3990 ba058dfe6b8b58efffae552700762ae1 199 SUPERFAMILY SSF48498 77 168 8.9E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7742 db2a5f1be8c013aec02fccfe0ece55a7 279 Gene3D G3DSA:3.20.20.30 2 260 7.1E-56 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7742 db2a5f1be8c013aec02fccfe0ece55a7 279 SUPERFAMILY SSF51679 3 259 4.42E-54 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7742 db2a5f1be8c013aec02fccfe0ece55a7 279 PANTHER PTHR30011 15 195 2.6E-38 T 19-04-2016 AMED_7742 db2a5f1be8c013aec02fccfe0ece55a7 279 Pfam PF00296 Luciferase-like monooxygenase 15 213 2.9E-41 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4691 01c897070730e740aa90beb63c81b86c 115 SUPERFAMILY SSF46785 6 100 6.24E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4691 01c897070730e740aa90beb63c81b86c 115 Pfam PF12840 Helix-turn-helix domain 10 68 3.9E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4691 01c897070730e740aa90beb63c81b86c 115 Gene3D G3DSA:1.10.10.10 4 105 1.2E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4691 01c897070730e740aa90beb63c81b86c 115 PANTHER PTHR38600 2 111 4.4E-18 T 19-04-2016 AMED_4691 01c897070730e740aa90beb63c81b86c 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 7.7E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4691 01c897070730e740aa90beb63c81b86c 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 7.7E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4691 01c897070730e740aa90beb63c81b86c 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 7.7E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4691 01c897070730e740aa90beb63c81b86c 115 SMART SM00418 10 84 2.3E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4691 01c897070730e740aa90beb63c81b86c 115 PANTHER PTHR38600:SF1 2 111 4.4E-18 T 19-04-2016 AMED_5999 ccbd089ab1d1af00f5e0921756b7e0f3 234 Hamap MF_00238 Cytidylate kinase [cmk]. 1 223 29.539 T 19-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 AMED_5999 ccbd089ab1d1af00f5e0921756b7e0f3 234 Gene3D G3DSA:3.40.50.300 1 217 5.2E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5999 ccbd089ab1d1af00f5e0921756b7e0f3 234 TIGRFAM TIGR00017 cmk: cytidylate kinase 2 213 1.1E-64 T 19-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 AMED_5999 ccbd089ab1d1af00f5e0921756b7e0f3 234 SUPERFAMILY SSF52540 1 217 8.01E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5999 ccbd089ab1d1af00f5e0921756b7e0f3 234 PANTHER PTHR21299 1 231 8.3E-51 T 19-04-2016 AMED_5999 ccbd089ab1d1af00f5e0921756b7e0f3 234 Pfam PF02224 Cytidylate kinase 2 218 7.6E-70 T 19-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 AMED_9106 0350bb66113ee030b458155ae10a1a22 214 SUPERFAMILY SSF46689 8 81 8.48E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9106 0350bb66113ee030b458155ae10a1a22 214 PANTHER PTHR30328 6 196 5.2E-18 T 19-04-2016 AMED_9106 0350bb66113ee030b458155ae10a1a22 214 Gene3D G3DSA:1.10.357.10 5 202 9.1E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9106 0350bb66113ee030b458155ae10a1a22 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9106 0350bb66113ee030b458155ae10a1a22 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9106 0350bb66113ee030b458155ae10a1a22 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 5.3E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 94 314 2.3E-35 T 19-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 Gene3D G3DSA:3.40.710.10 91 332 5.1E-70 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 PANTHER PTHR21581:SF1 95 332 1.1E-63 T 19-04-2016 AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 SUPERFAMILY SSF56601 94 332 1.91E-53 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 SUPERFAMILY SSF56601 10 37 1.91E-53 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 PANTHER PTHR21581 95 332 1.1E-63 T 19-04-2016 AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 170 187 2.4E-7 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 196 209 2.4E-7 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMED_0845 39e60c78807a3b409d66556846e1fd2c 414 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 122 133 2.4E-7 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 PANTHER PTHR23501:SF7 1 421 1.1E-108 T 19-04-2016 AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 PANTHER PTHR23501 1 421 1.1E-108 T 19-04-2016 AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 SUPERFAMILY SSF103473 228 432 8.5E-59 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 SUPERFAMILY SSF103473 2 184 8.5E-59 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 Gene3D G3DSA:1.20.1250.20 2 186 7.3E-26 T 19-04-2016 AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 Gene3D G3DSA:1.20.1250.20 251 431 7.8E-18 T 19-04-2016 AMED_2963 36706c391216f298a6d6243b3f45e7e7 440 Pfam PF07690 Major Facilitator Superfamily 7 387 2.3E-48 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 292 310 2.2E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 116 132 2.2E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 140 159 2.2E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 222 238 2.2E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PRINTS PR00133 Glycosyl hydrolase family 3 signature 186 202 2.2E-21 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 SUPERFAMILY SSF52279 410 612 1.96E-49 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 410 612 3.9E-40 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 Gene3D G3DSA:3.20.20.300 35 388 3.0E-116 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PANTHER PTHR30620 3 71 6.9E-239 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PANTHER PTHR30620 90 614 6.9E-239 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 56 371 1.4E-73 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PANTHER PTHR30620:SF38 3 71 6.9E-239 T 19-04-2016 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 PANTHER PTHR30620:SF38 90 614 6.9E-239 T 19-04-2016 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 Gene3D G3DSA:3.40.50.1700 395 612 1.1E-61 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_0939 fd250fc85c85b6085d8ec6f8cf7246f7 617 SUPERFAMILY SSF51445 35 408 2.11E-113 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2527 74f5180fa9a4f5abddada1c2b553a48f 84 Pfam PF01713 Smr domain 5 82 6.3E-12 T 19-04-2016 IPR002625 Smr domain AMED_2527 74f5180fa9a4f5abddada1c2b553a48f 84 SUPERFAMILY SSF160443 3 81 1.26E-5 T 19-04-2016 IPR002625 Smr domain AMED_0638 32f0ace768928d83c44831de6da36aca 435 SUPERFAMILY SSF53383 40 432 1.21E-96 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0638 32f0ace768928d83c44831de6da36aca 435 PANTHER PTHR30244 277 435 2.8E-129 T 19-04-2016 AMED_0638 32f0ace768928d83c44831de6da36aca 435 PANTHER PTHR30244 26 249 2.8E-129 T 19-04-2016 AMED_0638 32f0ace768928d83c44831de6da36aca 435 Gene3D G3DSA:3.90.1150.10 305 429 3.6E-45 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0638 32f0ace768928d83c44831de6da36aca 435 PANTHER PTHR30244:SF11 277 435 2.8E-129 T 19-04-2016 AMED_0638 32f0ace768928d83c44831de6da36aca 435 PANTHER PTHR30244:SF11 26 249 2.8E-129 T 19-04-2016 AMED_0638 32f0ace768928d83c44831de6da36aca 435 PIRSF PIRSF000390 31 435 8.1E-97 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0638 32f0ace768928d83c44831de6da36aca 435 Gene3D G3DSA:3.40.640.10 42 304 3.4E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0638 32f0ace768928d83c44831de6da36aca 435 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 53 428 4.8E-90 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_5967 49f13b068d46d108f380ee7cf85143dc 122 SUPERFAMILY SSF54593 5 120 2.06E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5967 49f13b068d46d108f380ee7cf85143dc 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 116 2.1E-5 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_5967 49f13b068d46d108f380ee7cf85143dc 122 Gene3D G3DSA:3.10.180.10 5 120 3.1E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6770 562a59993000cad1081261df86450f78 486 SUPERFAMILY SSF51556 56 119 3.31E-32 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6770 562a59993000cad1081261df86450f78 486 SUPERFAMILY SSF51556 176 440 3.31E-32 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6770 562a59993000cad1081261df86450f78 486 Pfam PF07969 Amidohydrolase family 45 483 1.0E-53 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_6770 562a59993000cad1081261df86450f78 486 Gene3D G3DSA:2.30.40.10 5 85 2.2E-12 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6770 562a59993000cad1081261df86450f78 486 SUPERFAMILY SSF51338 443 484 5.46E-10 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6770 562a59993000cad1081261df86450f78 486 SUPERFAMILY SSF51338 18 57 5.46E-10 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6770 562a59993000cad1081261df86450f78 486 Gene3D G3DSA:3.20.20.140 178 414 5.1E-23 T 19-04-2016 AMED_6770 562a59993000cad1081261df86450f78 486 PANTHER PTHR22642:SF2 24 485 2.6E-86 T 19-04-2016 AMED_6770 562a59993000cad1081261df86450f78 486 PANTHER PTHR22642 24 485 2.6E-86 T 19-04-2016 AMED_7879 6da5b412d243c3153302cc501a7cbe2f 165 SUPERFAMILY SSF50891 6 151 4.55E-8 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_7879 6da5b412d243c3153302cc501a7cbe2f 165 Pfam PF12903 Protein of unknown function (DUF3830) 7 164 5.3E-66 T 19-04-2016 IPR024532 Protein of unknown function DUF3830 AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 PANTHER PTHR24220 3 216 1.4E-94 T 19-04-2016 AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 SMART SM00382 26 219 9.7E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 PANTHER PTHR24220:SF10 3 216 1.4E-94 T 19-04-2016 AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 Gene3D G3DSA:3.40.50.300 2 211 3.4E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 Pfam PF00005 ABC transporter 17 157 2.1E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4308 148ab27e46125f3b9e5020c9aaabc453 257 SUPERFAMILY SSF52540 2 208 5.99E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1263 f25d5d9004cda4abc86858500d1d7295 400 Gene3D G3DSA:1.20.1250.20 231 390 3.1E-7 T 19-04-2016 AMED_1263 f25d5d9004cda4abc86858500d1d7295 400 Gene3D G3DSA:1.20.1250.20 42 190 2.7E-8 T 19-04-2016 AMED_1263 f25d5d9004cda4abc86858500d1d7295 400 PANTHER PTHR23513 15 395 2.1E-41 T 19-04-2016 AMED_1263 f25d5d9004cda4abc86858500d1d7295 400 SUPERFAMILY SSF103473 16 394 1.57E-24 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0756 a86ab7e8990a396040b83c499f32e138 241 PANTHER PTHR10108 64 221 3.2E-45 T 19-04-2016 AMED_0756 a86ab7e8990a396040b83c499f32e138 241 PANTHER PTHR10108:SF911 64 221 3.2E-45 T 19-04-2016 AMED_0756 a86ab7e8990a396040b83c499f32e138 241 Gene3D G3DSA:3.40.50.150 63 225 1.7E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0756 a86ab7e8990a396040b83c499f32e138 241 SUPERFAMILY SSF53335 54 221 3.71E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0756 a86ab7e8990a396040b83c499f32e138 241 Pfam PF13847 Methyltransferase domain 66 214 1.8E-28 T 19-04-2016 IPR025714 Methyltransferase domain AMED_3694 bd5173438a81c9ca34f6204f05b3c9c5 373 Pfam PF07730 Histidine kinase 179 246 2.4E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_3694 bd5173438a81c9ca34f6204f05b3c9c5 373 PANTHER PTHR24421 56 359 9.0E-47 T 19-04-2016 AMED_3694 bd5173438a81c9ca34f6204f05b3c9c5 373 SUPERFAMILY SSF55874 258 359 3.01E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3694 bd5173438a81c9ca34f6204f05b3c9c5 373 PANTHER PTHR24421:SF26 56 359 9.0E-47 T 19-04-2016 AMED_5518 1e017c8ae7d8b1792dddb8eda8aeb103 210 PIRSF PIRSF000709 1 202 3.7E-5 T 19-04-2016 AMED_5518 1e017c8ae7d8b1792dddb8eda8aeb103 210 Gene3D G3DSA:3.40.50.1240 4 209 1.1E-38 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_5518 1e017c8ae7d8b1792dddb8eda8aeb103 210 PANTHER PTHR23029 12 209 1.5E-27 T 19-04-2016 AMED_5518 1e017c8ae7d8b1792dddb8eda8aeb103 210 SUPERFAMILY SSF53254 4 209 4.71E-38 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_5518 1e017c8ae7d8b1792dddb8eda8aeb103 210 SMART SM00855 4 161 1.8E-9 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_5518 1e017c8ae7d8b1792dddb8eda8aeb103 210 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 192 1.0E-34 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 79 4.5E-28 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 Gene3D G3DSA:3.30.1320.10 2 83 2.9E-29 T 19-04-2016 IPR023803 Ribosomal protein S16 domain AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 SUPERFAMILY SSF54565 2 94 5.23E-30 T 19-04-2016 IPR023803 Ribosomal protein S16 domain AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 21.617 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 PANTHER PTHR12919 2 140 4.9E-46 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 PANTHER PTHR12919:SF20 2 140 4.9E-46 T 19-04-2016 AMED_1958 b51ce4a3c5ae567119ccf30fd63eaefa 147 Pfam PF00886 Ribosomal protein S16 9 67 1.8E-20 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3266 ce0987761f3b51da5fd5a707c47d47e1 288 Pfam PF04909 Amidohydrolase 9 287 1.5E-60 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_3266 ce0987761f3b51da5fd5a707c47d47e1 288 SUPERFAMILY SSF51556 9 287 4.64E-65 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3266 ce0987761f3b51da5fd5a707c47d47e1 288 PANTHER PTHR20852:SF60 172 287 1.6E-45 T 19-04-2016 AMED_3266 ce0987761f3b51da5fd5a707c47d47e1 288 Gene3D G3DSA:3.20.20.140 9 287 2.0E-64 T 19-04-2016 AMED_3266 ce0987761f3b51da5fd5a707c47d47e1 288 PANTHER PTHR20852 172 287 1.6E-45 T 19-04-2016 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49785 886 1009 1.08E-25 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49303 653 753 2.01E-28 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.120.260 886 1010 3.7E-27 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Pfam PF03422 Carbohydrate binding module (family 6) 890 1008 5.8E-9 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49303 206 313 2.16E-23 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Pfam PF00703 Glycosyl hydrolases family 2 212 313 1.3E-10 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.120.260 45 199 1.4E-23 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:2.60.40.320 224 312 3.3E-11 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 PANTHER PTHR10066 48 854 3.0E-178 T 19-04-2016 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 PANTHER PTHR10066:SF66 48 854 3.0E-178 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:3.20.20.80 582 656 7.7E-29 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Gene3D G3DSA:3.20.20.80 313 538 7.7E-29 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49785 45 200 5.1E-38 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 88 169 1.8E-7 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF49303 756 873 7.19E-34 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6094 9c5516fd9ef5d8537e86aa4fa13f0d8b 1010 SUPERFAMILY SSF51445 310 651 5.63E-76 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8334 7ec559aa081a63a4db253cfc0a76f6f7 202 PANTHER PTHR30506:SF3 1 202 1.3E-72 T 19-04-2016 AMED_8334 7ec559aa081a63a4db253cfc0a76f6f7 202 PANTHER PTHR30506 1 202 1.3E-72 T 19-04-2016 AMED_8334 7ec559aa081a63a4db253cfc0a76f6f7 202 Pfam PF03458 UPF0126 domain 5 79 2.9E-22 T 19-04-2016 IPR005115 Uncharacterised domain UPF0126 AMED_8334 7ec559aa081a63a4db253cfc0a76f6f7 202 Pfam PF03458 UPF0126 domain 91 162 3.1E-18 T 19-04-2016 IPR005115 Uncharacterised domain UPF0126 AMED_3121 dbaf28205aa08118a9b9fd21e236b5f2 126 SUPERFAMILY SSF52091 9 120 1.9E-16 T 19-04-2016 IPR002645 STAS domain AMED_3121 dbaf28205aa08118a9b9fd21e236b5f2 126 PANTHER PTHR33495 1 122 2.9E-20 T 19-04-2016 AMED_3121 dbaf28205aa08118a9b9fd21e236b5f2 126 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 9 112 5.4E-16 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_3121 dbaf28205aa08118a9b9fd21e236b5f2 126 Gene3D G3DSA:3.30.750.24 10 118 7.4E-20 T 19-04-2016 IPR002645 STAS domain AMED_3121 dbaf28205aa08118a9b9fd21e236b5f2 126 PANTHER PTHR33495:SF2 1 122 2.9E-20 T 19-04-2016 AMED_3121 dbaf28205aa08118a9b9fd21e236b5f2 126 Pfam PF13466 STAS domain 24 102 9.9E-10 T 19-04-2016 IPR002645 STAS domain AMED_7936 949a3ae017c60ae70e2813d449c5b32c 518 Pfam PF13556 PucR C-terminal helix-turn-helix domain 456 512 6.5E-18 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_7936 949a3ae017c60ae70e2813d449c5b32c 518 PANTHER PTHR33744:SF3 42 508 2.9E-31 T 19-04-2016 AMED_7936 949a3ae017c60ae70e2813d449c5b32c 518 PANTHER PTHR33744 42 508 2.9E-31 T 19-04-2016 AMED_7623 9385fdc844cc80ca708f979500657a00 132 SUPERFAMILY SSF53756 18 131 1.75E-11 T 19-04-2016 AMED_7623 9385fdc844cc80ca708f979500657a00 132 Gene3D G3DSA:3.40.50.2000 59 103 1.2E-4 T 19-04-2016 AMED_5673 f70819ee6d1d9f19905a5c4ae292b177 143 SUPERFAMILY SSF46689 2 45 6.16E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5673 f70819ee6d1d9f19905a5c4ae292b177 143 ProSitePatterns PS01081 TetR-type HTH domain signature. 5 36 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_5673 f70819ee6d1d9f19905a5c4ae292b177 143 Gene3D G3DSA:1.10.357.10 3 71 4.0E-9 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5673 f70819ee6d1d9f19905a5c4ae292b177 143 Pfam PF00440 Bacterial regulatory proteins, tetR family 3 39 3.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 PANTHER PTHR11712 10 305 6.1E-15 T 19-04-2016 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 Gene3D G3DSA:3.40.47.10 10 237 6.0E-28 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 SUPERFAMILY SSF53901 10 230 4.14E-39 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 PANTHER PTHR11712:SF253 10 305 6.1E-15 T 19-04-2016 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 SUPERFAMILY SSF53901 215 337 1.84E-9 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 Gene3D G3DSA:3.40.47.10 260 334 4.4E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4043 5edd829aaad10855bf3509dec8be0858 369 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 229 4.2E-19 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_6069 26941fce9ca0df687202327302fa5e74 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 276 1.2E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6069 26941fce9ca0df687202327302fa5e74 282 PANTHER PTHR32243 1 282 4.9E-119 T 19-04-2016 AMED_6069 26941fce9ca0df687202327302fa5e74 282 Gene3D G3DSA:1.10.3720.10 5 270 1.1E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6069 26941fce9ca0df687202327302fa5e74 282 PANTHER PTHR32243:SF42 1 282 4.9E-119 T 19-04-2016 AMED_6069 26941fce9ca0df687202327302fa5e74 282 SUPERFAMILY SSF161098 5 282 1.31E-65 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 PANTHER PTHR33204 1 107 1.4E-31 T 19-04-2016 AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 PANTHER PTHR33204:SF9 1 107 1.4E-31 T 19-04-2016 AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 Pfam PF01638 HxlR-like helix-turn-helix 21 108 1.5E-21 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 Gene3D G3DSA:1.10.10.10 5 109 1.1E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 SUPERFAMILY SSF46785 8 120 3.0E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 Gene3D G3DSA:3.30.1050.10 126 217 2.2E-5 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_6876 8cf67ddcf7596fde221a9f4b94e24c41 232 SUPERFAMILY SSF55718 126 217 1.82E-8 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_2495 23f27d5b93254a2f9824144d1f0a01c9 216 Pfam PF05988 Bacterial protein of unknown function (DUF899) 5 216 2.9E-79 T 19-04-2016 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMED_2495 23f27d5b93254a2f9824144d1f0a01c9 216 Gene3D G3DSA:3.40.30.10 53 167 4.6E-4 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_3739 f87ec596cad5a084fa258b2ab7b6ae60 412 PANTHER PTHR15108 2 407 3.6E-50 T 19-04-2016 AMED_3739 f87ec596cad5a084fa258b2ab7b6ae60 412 SUPERFAMILY SSF48208 11 398 4.23E-107 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3739 f87ec596cad5a084fa258b2ab7b6ae60 412 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 35 388 1.2E-106 T 19-04-2016 AMED_3739 f87ec596cad5a084fa258b2ab7b6ae60 412 Gene3D G3DSA:1.50.10.10 13 392 7.6E-92 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 383 4.3E-113 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 SUPERFAMILY SSF53901 263 384 7.21E-39 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 Gene3D G3DSA:3.40.47.10 182 268 3.9E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 Gene3D G3DSA:3.40.47.10 5 124 3.9E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 SUPERFAMILY SSF53901 5 262 1.78E-59 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 PIRSF PIRSF000429 1 385 6.1E-112 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 PANTHER PTHR18919:SF71 1 385 5.7E-137 T 19-04-2016 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 Pfam PF00108 Thiolase, N-terminal domain 5 254 1.2E-56 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 Pfam PF02803 Thiolase, C-terminal domain 263 384 2.6E-40 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 PANTHER PTHR18919 1 385 5.7E-137 T 19-04-2016 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 Gene3D G3DSA:3.40.47.10 269 384 8.3E-50 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 Gene3D G3DSA:3.40.47.10 148 181 8.3E-50 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 ProSitePatterns PS00737 Thiolases signature 2. 331 347 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_2550 e269e31ec2380aa1643c3d07df33444c 385 ProSitePatterns PS00099 Thiolases active site. 366 379 - T 19-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AMED_3482 8cbe7bedc4891a38c6570d07540e7dda 317 Pfam PF00294 pfkB family carbohydrate kinase 19 290 1.6E-40 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_3482 8cbe7bedc4891a38c6570d07540e7dda 317 SUPERFAMILY SSF53613 4 291 1.31E-57 T 19-04-2016 IPR029056 Ribokinase-like AMED_3482 8cbe7bedc4891a38c6570d07540e7dda 317 PANTHER PTHR10584 5 289 1.0E-45 T 19-04-2016 AMED_3482 8cbe7bedc4891a38c6570d07540e7dda 317 Gene3D G3DSA:3.40.1190.20 4 299 8.3E-62 T 19-04-2016 IPR029056 Ribokinase-like AMED_3802 538e442bb68075ee32224cc1944bc736 312 PANTHER PTHR24320:SF72 57 155 1.0E-26 T 19-04-2016 AMED_3802 538e442bb68075ee32224cc1944bc736 312 PANTHER PTHR24320:SF72 173 306 1.0E-26 T 19-04-2016 AMED_3802 538e442bb68075ee32224cc1944bc736 312 Pfam PF00106 short chain dehydrogenase 6 148 3.0E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3802 538e442bb68075ee32224cc1944bc736 312 Gene3D G3DSA:3.40.50.720 184 240 9.5E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3802 538e442bb68075ee32224cc1944bc736 312 Gene3D G3DSA:3.40.50.720 5 152 9.5E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3802 538e442bb68075ee32224cc1944bc736 312 SUPERFAMILY SSF51735 1 273 4.83E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3802 538e442bb68075ee32224cc1944bc736 312 PANTHER PTHR24320 57 155 1.0E-26 T 19-04-2016 AMED_3802 538e442bb68075ee32224cc1944bc736 312 PANTHER PTHR24320 173 306 1.0E-26 T 19-04-2016 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 160 1.1E-20 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 Pfam PF08281 Sigma-70, region 4 104 157 8.0E-13 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 PANTHER PTHR30173 1 166 1.3E-27 T 19-04-2016 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 Gene3D G3DSA:1.10.10.10 103 164 1.6E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 SUPERFAMILY SSF88946 3 93 3.92E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 3 163 3.8E-49 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 Pfam PF04542 Sigma-70 region 2 15 79 5.7E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 SUPERFAMILY SSF88659 103 162 3.92E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9074 f13c91c33dafd247d6401d7a0e961885 169 Gene3D G3DSA:1.10.1740.10 3 81 1.3E-14 T 19-04-2016 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 Gene3D G3DSA:3.50.50.60 11 119 7.8E-22 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 PANTHER PTHR10632 12 442 5.9E-20 T 19-04-2016 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 SUPERFAMILY SSF51905 6 350 6.82E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 9.8E-9 T 19-04-2016 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 9.8E-9 T 19-04-2016 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 9.8E-9 T 19-04-2016 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 Gene3D G3DSA:3.50.50.60 120 349 2.7E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 341 7.6E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8186 6be8ed50a662fa35d308916a342682ab 444 PANTHER PTHR10632:SF8 12 442 5.9E-20 T 19-04-2016 AMED_6161 ccbfa39ac20705a87f08b050ae820fbf 148 SUPERFAMILY SSF140990 16 147 2.35E-7 T 19-04-2016 AMED_0192 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 Pfam PF00202 Aminotransferase class-III 25 422 8.4E-88 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0192 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 PANTHER PTHR11986:SF75 1 430 1.2E-160 T 19-04-2016 AMED_0192 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 Gene3D G3DSA:3.40.640.10 62 310 8.0E-72 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0192 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 Gene3D G3DSA:3.90.1150.10 311 424 1.4E-38 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0192 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 PANTHER PTHR11986 1 430 1.2E-160 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0192 fdcbfa4bd117b6c29bfa155e9ce6ac59 430 SUPERFAMILY SSF53383 13 422 1.4E-108 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_5393 6625699e6d1711cf8fba11b6ffff1fdd 293 SUPERFAMILY SSF53448 2 286 4.51E-81 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5393 6625699e6d1711cf8fba11b6ffff1fdd 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 1.1E-129 T 19-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 AMED_5393 6625699e6d1711cf8fba11b6ffff1fdd 293 PANTHER PTHR22572:SF105 2 263 1.8E-140 T 19-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 AMED_5393 6625699e6d1711cf8fba11b6ffff1fdd 293 PANTHER PTHR22572 2 263 1.8E-140 T 19-04-2016 AMED_5393 6625699e6d1711cf8fba11b6ffff1fdd 293 Gene3D G3DSA:3.90.550.10 2 255 3.7E-62 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5393 6625699e6d1711cf8fba11b6ffff1fdd 293 Pfam PF00483 Nucleotidyl transferase 2 237 5.0E-62 T 19-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 AMED_9181 32c441cf8f452604d32fa22c04e815ad 398 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 113 346 7.4E-39 T 19-04-2016 IPR018713 Domain of unknown function DUF2236 AMED_9181 32c441cf8f452604d32fa22c04e815ad 398 PANTHER PTHR37539 79 390 1.4E-37 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 PANTHER PTHR24423:SF468 406 421 8.8E-30 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 541 631 2.4E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 Pfam PF08376 Nitrate and nitrite sensing 80 318 3.0E-26 T 19-04-2016 IPR013587 Nitrate/nitrite sensing protein AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 Pfam PF00672 HAMP domain 339 421 1.9E-11 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 SUPERFAMILY SSF55874 523 648 1.29E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 SMART SM00304 358 426 0.0046 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 PANTHER PTHR24423:SF468 446 647 8.8E-30 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 PANTHER PTHR24423 25 30 8.8E-30 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 SMART SM00387 538 650 7.3E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 PANTHER PTHR24423 446 647 8.8E-30 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 PANTHER PTHR24423:SF468 25 30 8.8E-30 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 PANTHER PTHR24423 406 421 8.8E-30 T 19-04-2016 AMED_2491 501345a870ae47ed57fa0dc1dfa50d5d 1347 Gene3D G3DSA:3.30.565.10 516 649 3.5E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 SMART SM01193 4 134 3.3E-87 T 19-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 SMART SM01192 139 425 4.3E-205 T 19-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 363 380 1.8E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 107 123 1.8E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 311 322 1.8E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 161 174 1.8E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 37 51 1.8E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PRINTS PR00148 Enolase signature 334 348 1.8E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 Gene3D G3DSA:3.30.390.10 4 126 5.4E-53 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PIRSF PIRSF001400 1 424 7.9E-184 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 SUPERFAMILY SSF54826 3 138 8.31E-53 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 ProSitePatterns PS00164 Enolase signature. 334 347 - T 19-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 SUPERFAMILY SSF51604 140 422 4.08E-121 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 Pfam PF03952 Enolase, N-terminal domain 4 133 4.3E-58 T 19-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 PANTHER PTHR11902 1 421 2.9E-241 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 2.0E-201 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 422 1.9E-122 T 19-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 Gene3D G3DSA:3.20.20.120 128 423 1.4E-126 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8143 ee032dad62e22f03fe9b8eb0128c4fb0 427 Hamap MF_00318 Enolase [eno]. 2 411 43.97 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_1935 d0842aa425ee2a54930a6f73fc7bbfe5 139 PANTHER PTHR35908:SF1 45 139 7.0E-35 T 19-04-2016 AMED_1935 d0842aa425ee2a54930a6f73fc7bbfe5 139 SUPERFAMILY SSF54593 2 139 8.53E-8 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1935 d0842aa425ee2a54930a6f73fc7bbfe5 139 PANTHER PTHR35908 45 139 7.0E-35 T 19-04-2016 AMED_1935 d0842aa425ee2a54930a6f73fc7bbfe5 139 PANTHER PTHR35908 1 26 7.0E-35 T 19-04-2016 AMED_1935 d0842aa425ee2a54930a6f73fc7bbfe5 139 Gene3D G3DSA:3.10.180.10 1 138 8.5E-13 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1935 d0842aa425ee2a54930a6f73fc7bbfe5 139 PANTHER PTHR35908:SF1 1 26 7.0E-35 T 19-04-2016 AMED_6533 1701a895b6c7b966605da902f3ee456f 256 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6533 1701a895b6c7b966605da902f3ee456f 256 PANTHER PTHR24220:SF266 4 249 2.3E-87 T 19-04-2016 AMED_6533 1701a895b6c7b966605da902f3ee456f 256 SMART SM00382 27 212 2.5E-19 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6533 1701a895b6c7b966605da902f3ee456f 256 SUPERFAMILY SSF52540 3 226 1.33E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6533 1701a895b6c7b966605da902f3ee456f 256 Pfam PF00005 ABC transporter 19 167 3.8E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6533 1701a895b6c7b966605da902f3ee456f 256 Gene3D G3DSA:3.40.50.300 2 231 4.1E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6533 1701a895b6c7b966605da902f3ee456f 256 PANTHER PTHR24220 4 249 2.3E-87 T 19-04-2016 AMED_2067 3f73030d5c4b4414491de7b20b711ba7 188 Pfam PF05076 Suppressor of fused protein (SUFU) 39 184 3.7E-14 T 19-04-2016 IPR020941 Suppressor of fused-like domain AMED_6087 39fafede1c6e6cb7bcb18ab9fa8b9d25 260 PANTHER PTHR41913:SF1 1 260 3.7E-41 T 19-04-2016 AMED_6087 39fafede1c6e6cb7bcb18ab9fa8b9d25 260 Pfam PF07920 Protein of unknown function (DUF1684) 117 254 5.0E-42 T 19-04-2016 IPR012467 Protein of unknown function DUF1684 AMED_6087 39fafede1c6e6cb7bcb18ab9fa8b9d25 260 PANTHER PTHR41913 1 260 3.7E-41 T 19-04-2016 AMED_6945 4ce78a9cae86edad3e8693186e78813c 247 Pfam PF00795 Carbon-nitrogen hydrolase 15 226 2.1E-44 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_6945 4ce78a9cae86edad3e8693186e78813c 247 Gene3D G3DSA:3.60.110.10 17 244 2.9E-68 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_6945 4ce78a9cae86edad3e8693186e78813c 247 PANTHER PTHR23088:SF27 17 243 8.3E-61 T 19-04-2016 AMED_6945 4ce78a9cae86edad3e8693186e78813c 247 PANTHER PTHR23088 17 243 8.3E-61 T 19-04-2016 AMED_6945 4ce78a9cae86edad3e8693186e78813c 247 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 124 144 - T 19-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site AMED_6945 4ce78a9cae86edad3e8693186e78813c 247 SUPERFAMILY SSF56317 2 243 3.27E-64 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 Gene3D G3DSA:3.20.20.70 1 256 3.9E-88 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 SUPERFAMILY SSF51366 1 254 4.16E-78 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 PANTHER PTHR10314:SF4 1 51 1.6E-14 T 19-04-2016 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 PANTHER PTHR10314:SF4 74 142 1.6E-14 T 19-04-2016 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 242 1.5E-62 T 19-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 19-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 255 32.095 T 19-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 Pfam PF00290 Tryptophan synthase alpha chain 8 255 8.3E-70 T 19-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 PANTHER PTHR10314 1 51 1.6E-14 T 19-04-2016 AMED_2295 be3afe0e920c36c7fa30561d24fe51c6 263 PANTHER PTHR10314 74 142 1.6E-14 T 19-04-2016 AMED_9034 5e2d5b19b7f91569684304754daf538e 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 349 41.193 T 19-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9034 5e2d5b19b7f91569684304754daf538e 356 Gene3D G3DSA:3.90.650.10 173 341 7.1E-59 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9034 5e2d5b19b7f91569684304754daf538e 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 342 1.7E-29 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_9034 5e2d5b19b7f91569684304754daf538e 356 Gene3D G3DSA:3.30.1330.10 22 170 3.3E-52 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_9034 5e2d5b19b7f91569684304754daf538e 356 SUPERFAMILY SSF55326 7 170 6.98E-44 T 19-04-2016 AMED_9034 5e2d5b19b7f91569684304754daf538e 356 PANTHER PTHR10520 7 353 6.0E-159 T 19-04-2016 AMED_9034 5e2d5b19b7f91569684304754daf538e 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 337 2.0E-132 T 19-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMED_9034 5e2d5b19b7f91569684304754daf538e 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 62 165 4.9E-14 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMED_9034 5e2d5b19b7f91569684304754daf538e 356 SUPERFAMILY SSF56042 173 341 2.09E-50 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMED_1495 28d60802d875d6b5aaebc5567ded98b7 182 SUPERFAMILY SSF46689 4 68 4.46E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1495 28d60802d875d6b5aaebc5567ded98b7 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 46 1.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1495 28d60802d875d6b5aaebc5567ded98b7 182 Gene3D G3DSA:1.10.357.10 5 174 7.3E-17 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 3.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 3.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 3.8E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 SUPERFAMILY SSF46689 14 93 5.99E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 SUPERFAMILY SSF48498 88 200 1.36E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 Gene3D G3DSA:1.10.357.10 67 202 2.5E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 Gene3D G3DSA:1.10.10.60 16 66 1.1E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 PANTHER PTHR30055:SF75 5 200 8.7E-38 T 19-04-2016 AMED_2904 71aff4d02d09c5d651987e3eeb032f90 204 PANTHER PTHR30055 5 200 8.7E-38 T 19-04-2016 AMED_5383 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 PANTHER PTHR23517 17 419 1.4E-24 T 19-04-2016 AMED_5383 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 Gene3D G3DSA:1.20.1250.20 13 208 6.9E-24 T 19-04-2016 AMED_5383 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 Gene3D G3DSA:1.20.1250.20 231 414 9.4E-25 T 19-04-2016 AMED_5383 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 Pfam PF07690 Major Facilitator Superfamily 20 283 2.1E-23 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5383 3f46b45a06d52b9ddd9d9abb5c4fb79a 421 SUPERFAMILY SSF103473 13 414 2.49E-52 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1044 8a84fe3d5adc25b2997d6196bc1e03e4 461 Pfam PF00534 Glycosyl transferases group 1 278 432 2.6E-19 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_1044 8a84fe3d5adc25b2997d6196bc1e03e4 461 Gene3D G3DSA:3.40.50.2000 278 429 2.1E-15 T 19-04-2016 AMED_1044 8a84fe3d5adc25b2997d6196bc1e03e4 461 SUPERFAMILY SSF53756 101 436 7.07E-39 T 19-04-2016 AMED_1044 8a84fe3d5adc25b2997d6196bc1e03e4 461 PANTHER PTHR12526 107 430 1.5E-22 T 19-04-2016 AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 Gene3D G3DSA:3.30.1050.10 300 388 7.8E-14 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 SUPERFAMILY SSF55729 5 298 1.04E-47 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 Pfam PF13527 Acetyltransferase (GNAT) domain 5 130 6.5E-23 T 19-04-2016 AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 Gene3D G3DSA:3.40.630.30 142 283 5.4E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 PANTHER PTHR37817 52 400 1.5E-49 T 19-04-2016 AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 Pfam PF13530 Sterol carrier protein domain 178 395 2.1E-48 T 19-04-2016 IPR025559 Enhanced intracellular survival protein domain AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 Gene3D G3DSA:3.40.630.30 2 134 2.1E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 PANTHER PTHR37817:SF1 52 400 1.5E-49 T 19-04-2016 AMED_4876 51832ab26d2a08dd8c605a2980b9d596 400 SUPERFAMILY SSF55718 299 400 7.46E-17 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 291 1.6E-26 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 256 265 1.6E-26 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 45 64 1.6E-26 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 1.6E-26 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 45 52 - T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 PANTHER PTHR11405:SF1 3 305 2.3E-131 T 19-04-2016 AMED_6040 546b477a481225667de840b6294733f9 308 PANTHER PTHR11405 3 305 2.3E-131 T 19-04-2016 AMED_6040 546b477a481225667de840b6294733f9 308 Gene3D G3DSA:3.40.50.1370 137 290 2.0E-58 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 140 1.6E-49 T 19-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 3 303 1.3E-115 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6040 546b477a481225667de840b6294733f9 308 SUPERFAMILY SSF53671 2 304 3.27E-101 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 Gene3D G3DSA:3.40.50.1370 2 136 2.9E-53 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 282 293 3.74E-29 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 116 130 3.74E-29 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 43 57 3.74E-29 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 76 89 3.74E-29 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6040 546b477a481225667de840b6294733f9 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 220 230 3.74E-29 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6040 546b477a481225667de840b6294733f9 308 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 147 301 1.1E-52 T 19-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMED_6040 546b477a481225667de840b6294733f9 308 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 2 304 77.61 T 19-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMED_6800 97536486b6072b083444d0d620d1f384 296 SUPERFAMILY SSF51679 1 290 2.75E-53 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6800 97536486b6072b083444d0d620d1f384 296 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 23 271 9.8E-56 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_6800 97536486b6072b083444d0d620d1f384 296 PANTHER PTHR30011 6 243 1.8E-40 T 19-04-2016 AMED_6800 97536486b6072b083444d0d620d1f384 296 Gene3D G3DSA:3.20.20.30 1 277 6.8E-54 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6800 97536486b6072b083444d0d620d1f384 296 Pfam PF00296 Luciferase-like monooxygenase 1 251 6.2E-40 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5719 344cfbdf92163f997e41fed2e3c54452 153 PANTHER PTHR19271 1 93 7.2E-23 T 19-04-2016 AMED_5719 344cfbdf92163f997e41fed2e3c54452 153 PANTHER PTHR19271:SF7 1 93 7.2E-23 T 19-04-2016 AMED_4958 88a32a382b03730875866f7bd6287137 192 PANTHER PTHR30328:SF3 9 190 4.3E-31 T 19-04-2016 AMED_4958 88a32a382b03730875866f7bd6287137 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.3E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4958 88a32a382b03730875866f7bd6287137 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.3E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4958 88a32a382b03730875866f7bd6287137 192 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_4958 88a32a382b03730875866f7bd6287137 192 Gene3D G3DSA:1.10.357.10 7 189 1.1E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4958 88a32a382b03730875866f7bd6287137 192 SUPERFAMILY SSF46689 5 85 3.84E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4958 88a32a382b03730875866f7bd6287137 192 PANTHER PTHR30328 9 190 4.3E-31 T 19-04-2016 AMED_4958 88a32a382b03730875866f7bd6287137 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.9E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1964 1f357df0372439514e27f1b7e677196c 311 SUPERFAMILY SSF51306 65 117 1.41E-42 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_1964 1f357df0372439514e27f1b7e677196c 311 SUPERFAMILY SSF51306 149 257 1.41E-42 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMED_1964 1f357df0372439514e27f1b7e677196c 311 Pfam PF00717 Peptidase S24-like 73 119 3.5E-6 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMED_1964 1f357df0372439514e27f1b7e677196c 311 Gene3D G3DSA:2.10.109.10 62 116 2.5E-35 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_1964 1f357df0372439514e27f1b7e677196c 311 Gene3D G3DSA:2.10.109.10 148 164 2.5E-35 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_1964 1f357df0372439514e27f1b7e677196c 311 Gene3D G3DSA:2.10.109.10 205 260 2.5E-35 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMED_1964 1f357df0372439514e27f1b7e677196c 311 Pfam PF10502 Signal peptidase, peptidase S26 153 248 5.7E-6 T 19-04-2016 IPR019533 Peptidase S26 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 154 166 3.8E-18 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 205 224 3.8E-18 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 66 82 3.8E-18 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PANTHER PTHR12383 150 257 4.7E-58 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PANTHER PTHR12383 34 116 4.7E-58 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_1964 1f357df0372439514e27f1b7e677196c 311 ProSitePatterns PS00761 Signal peptidases I signature 3. 210 223 - T 19-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMED_1964 1f357df0372439514e27f1b7e677196c 311 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 52 250 7.3E-37 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PANTHER PTHR12383:SF14 150 257 4.7E-58 T 19-04-2016 AMED_1964 1f357df0372439514e27f1b7e677196c 311 PANTHER PTHR12383:SF14 34 116 4.7E-58 T 19-04-2016 AMED_8284 434e9f338bd34ec9d99dd9822ab518a4 281 Pfam PF13460 NAD(P)H-binding 12 181 7.1E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8284 434e9f338bd34ec9d99dd9822ab518a4 281 PANTHER PTHR14194 8 280 4.4E-51 T 19-04-2016 AMED_8284 434e9f338bd34ec9d99dd9822ab518a4 281 PANTHER PTHR14194:SF21 8 280 4.4E-51 T 19-04-2016 AMED_8284 434e9f338bd34ec9d99dd9822ab518a4 281 Gene3D G3DSA:3.40.50.720 4 213 4.2E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8284 434e9f338bd34ec9d99dd9822ab518a4 281 SUPERFAMILY SSF51735 4 272 1.21E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992:SF863 173 264 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 SUPERFAMILY SSF53474 173 244 2.16E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 SUPERFAMILY SSF53474 289 442 2.16E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 SUPERFAMILY SSF53474 71 134 2.16E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 Gene3D G3DSA:3.40.50.1820 52 136 5.2E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 Gene3D G3DSA:3.40.50.1820 175 456 5.2E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992 173 264 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 Pfam PF00561 alpha/beta hydrolase fold 94 444 1.0E-26 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992:SF863 350 459 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992 328 334 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992 350 459 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992:SF863 52 135 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992 52 135 3.2E-45 T 19-04-2016 AMED_3100 f5a52bc5883c8a67a4169613cb2da164 470 PANTHER PTHR10992:SF863 328 334 3.2E-45 T 19-04-2016 AMED_2588 ff3bef06778ae4848d37e728e6c7ef6c 454 Pfam PF00120 Glutamine synthetase, catalytic domain 116 437 3.1E-60 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2588 ff3bef06778ae4848d37e728e6c7ef6c 454 PANTHER PTHR20852 22 454 1.1E-88 T 19-04-2016 AMED_2588 ff3bef06778ae4848d37e728e6c7ef6c 454 PANTHER PTHR20852:SF16 22 454 1.1E-88 T 19-04-2016 AMED_2588 ff3bef06778ae4848d37e728e6c7ef6c 454 SMART SM01230 114 364 2.4E-55 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2588 ff3bef06778ae4848d37e728e6c7ef6c 454 SUPERFAMILY SSF55931 114 439 7.36E-67 T 19-04-2016 AMED_2588 ff3bef06778ae4848d37e728e6c7ef6c 454 Gene3D G3DSA:3.30.590.10 117 433 2.2E-66 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 Gene3D G3DSA:3.40.50.300 342 549 4.2E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 Pfam PF00005 ABC transporter 345 487 2.6E-13 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 SUPERFAMILY SSF52540 341 549 6.64E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 Gene3D G3DSA:1.20.1560.10 10 315 2.3E-52 T 19-04-2016 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 Pfam PF00664 ABC transporter transmembrane region 22 290 1.2E-28 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 PANTHER PTHR24221:SF161 9 552 7.7E-98 T 19-04-2016 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 SUPERFAMILY SSF90123 10 315 8.89E-55 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 PANTHER PTHR24221 9 552 7.7E-98 T 19-04-2016 AMED_5029 a7760d050cac0b1362a33ba2d31fb935 556 ProSitePatterns PS00211 ABC transporters family signature. 460 474 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6620 613bfbc6d8c082b177c0f091f617ba25 129 PANTHER PTHR14948 6 120 2.8E-15 T 19-04-2016 AMED_6620 613bfbc6d8c082b177c0f091f617ba25 129 Pfam PF04505 Interferon-induced transmembrane protein 44 110 1.1E-22 T 19-04-2016 IPR007593 CD225/Dispanin family GO:0009607|GO:0016021 AMED_0634 2d5659014371427c8babc68195ca7532 242 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 78 1.7E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0634 2d5659014371427c8babc68195ca7532 242 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 94 238 6.9E-14 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_0634 2d5659014371427c8babc68195ca7532 242 PANTHER PTHR30328 6 132 1.2E-30 T 19-04-2016 AMED_0634 2d5659014371427c8babc68195ca7532 242 SUPERFAMILY SSF46689 27 87 3.95E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0634 2d5659014371427c8babc68195ca7532 242 PANTHER PTHR30328:SF17 6 132 1.2E-30 T 19-04-2016 AMED_0634 2d5659014371427c8babc68195ca7532 242 SUPERFAMILY SSF48498 97 239 3.0E-26 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0634 2d5659014371427c8babc68195ca7532 242 Gene3D G3DSA:1.10.357.10 20 238 3.1E-52 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 Pfam PF13581 Histidine kinase-like ATPase domain 215 271 1.4E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 SUPERFAMILY SSF55781 8 92 4.91E-14 T 19-04-2016 IPR029016 GAF domain-like AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 Pfam PF13185 GAF domain 10 92 3.8E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 PANTHER PTHR24421 78 308 1.5E-31 T 19-04-2016 AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 SUPERFAMILY SSF55874 186 308 2.88E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 Pfam PF07730 Histidine kinase 109 175 2.0E-13 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 Gene3D G3DSA:3.30.565.10 218 308 4.0E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0166 4ff53de04791e72d5e7b6636349c796c 309 Gene3D G3DSA:3.30.450.40 8 102 4.3E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_8637 df6e6cb039ad42b07074b92996bc9b98 240 PANTHER PTHR21343:SF9 6 232 1.5E-59 T 19-04-2016 AMED_8637 df6e6cb039ad42b07074b92996bc9b98 240 Gene3D G3DSA:3.40.50.880 19 209 1.9E-20 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_8637 df6e6cb039ad42b07074b92996bc9b98 240 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 8 199 2.2E-34 T 19-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 AMED_8637 df6e6cb039ad42b07074b92996bc9b98 240 SUPERFAMILY SSF52317 28 211 2.21E-22 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_8637 df6e6cb039ad42b07074b92996bc9b98 240 PANTHER PTHR21343 6 232 1.5E-59 T 19-04-2016 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 PANTHER PTHR24421 77 409 2.4E-68 T 19-04-2016 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 PANTHER PTHR24421:SF24 77 409 2.4E-68 T 19-04-2016 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 Gene3D G3DSA:3.30.565.10 302 398 2.4E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 SUPERFAMILY SSF55874 282 397 1.22E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 378 2.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 397 2.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 354 2.5E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 398 6.7E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 PIRSF PIRSF037434 7 403 8.3E-93 T 19-04-2016 IPR017205 Signal transduction histidine kinase, ChrS AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 Pfam PF07730 Histidine kinase 197 264 1.4E-16 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5507 cff3a5e1f065d9b56f31ad6e019c30ad 409 SMART SM00387 304 400 2.5E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 PANTHER PTHR26402 1 229 5.6E-93 T 19-04-2016 AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 Pfam PF00072 Response regulator receiver domain 4 113 4.0E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 PANTHER PTHR26402:SF556 1 229 5.6E-93 T 19-04-2016 AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 Gene3D G3DSA:3.40.50.2300 2 121 8.9E-38 T 19-04-2016 AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 SUPERFAMILY SSF52172 2 184 5.58E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 5.4E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 Gene3D G3DSA:1.10.10.10 128 228 2.9E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 SMART SM00862 151 226 4.5E-26 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5601 9644f893f63c29c7399afd69eb7bd3e7 231 SMART SM00448 1 112 5.3E-39 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF52540 251 455 1.24E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 Pfam PF00486 Transcriptional regulatory protein, C terminal 21 71 5.2E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:1.25.40.10 673 954 2.4E-26 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 Pfam PF00931 NB-ARC domain 278 455 6.1E-10 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF48452 670 823 5.24E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF48452 802 957 7.59E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00862 10 91 4.1E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 Gene3D G3DSA:1.10.10.10 20 72 4.1E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF46894 13 71 4.82E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 716 749 110.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 876 909 35.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 756 789 200.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM00028 676 709 62.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SMART SM01043 98 238 3.6E-21 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 PANTHER PTHR35807 1 323 4.2E-40 T 19-04-2016 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 SUPERFAMILY SSF48452 93 256 9.74E-22 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5278 3f3e06f7bb075a25aa3e6b054f67995e 984 Pfam PF03704 Bacterial transcriptional activator domain 99 237 4.1E-20 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 PANTHER PTHR30055:SF19 3 200 1.9E-28 T 19-04-2016 AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 9.6E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 SUPERFAMILY SSF48498 86 191 8.09E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 3.6E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 3.6E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 SUPERFAMILY SSF46689 8 90 5.49E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 PANTHER PTHR30055 3 200 1.9E-28 T 19-04-2016 AMED_0877 fc70d1b885b13c1b60bacaf62b78f8df 212 Gene3D G3DSA:1.10.357.10 9 203 1.7E-45 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 Gene3D G3DSA:1.10.10.60 215 265 9.6E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 Gene3D G3DSA:1.10.10.60 266 312 2.6E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 PANTHER PTHR11019 65 317 7.9E-74 T 19-04-2016 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 Pfam PF01965 DJ-1/PfpI family 2 170 2.8E-23 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_4738 28129aefc645e7cb2c78004250d23d22 336 SMART SM00342 226 309 1.1E-16 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 SUPERFAMILY SSF46689 209 257 1.43E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 Gene3D G3DSA:3.40.50.880 1 214 8.0E-56 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_4738 28129aefc645e7cb2c78004250d23d22 336 PANTHER PTHR11019:SF58 65 317 7.9E-74 T 19-04-2016 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 SUPERFAMILY SSF46689 263 310 3.32E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 Pfam PF12833 Helix-turn-helix domain 232 310 1.5E-16 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4738 28129aefc645e7cb2c78004250d23d22 336 SUPERFAMILY SSF52317 1 191 9.35E-48 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5326 b7dc56aa93fd803f48ada7be129f41b8 180 PANTHER PTHR23089:SF16 1 180 1.6E-85 T 19-04-2016 AMED_5326 b7dc56aa93fd803f48ada7be129f41b8 180 PANTHER PTHR23089 1 180 1.6E-85 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_5326 b7dc56aa93fd803f48ada7be129f41b8 180 SUPERFAMILY SSF54197 20 171 7.89E-43 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_5326 b7dc56aa93fd803f48ada7be129f41b8 180 Gene3D G3DSA:3.30.428.10 39 180 4.1E-39 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_5326 b7dc56aa93fd803f48ada7be129f41b8 180 Pfam PF01230 HIT domain 60 148 8.6E-13 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_4823 c9d35688a9d50a964cb49b02af99da44 251 Gene3D G3DSA:3.60.15.10 3 207 1.1E-46 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4823 c9d35688a9d50a964cb49b02af99da44 251 PANTHER PTHR15032 2 204 1.4E-46 T 19-04-2016 AMED_4823 c9d35688a9d50a964cb49b02af99da44 251 SMART SM00849 11 203 0.0062 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4823 c9d35688a9d50a964cb49b02af99da44 251 Pfam PF12706 Beta-lactamase superfamily domain 23 204 9.7E-27 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_4823 c9d35688a9d50a964cb49b02af99da44 251 SUPERFAMILY SSF56281 5 207 5.77E-30 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1632 0fab96d857b9541773088a4131a6074e 251 PANTHER PTHR23416 87 241 1.5E-35 T 19-04-2016 AMED_1632 0fab96d857b9541773088a4131a6074e 251 SUPERFAMILY SSF51161 36 224 5.54E-33 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_1632 0fab96d857b9541773088a4131a6074e 251 PANTHER PTHR23416:SF23 87 241 1.5E-35 T 19-04-2016 AMED_1632 0fab96d857b9541773088a4131a6074e 251 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 166 200 1.2E-6 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_1632 0fab96d857b9541773088a4131a6074e 251 Gene3D G3DSA:2.160.10.10 60 246 8.8E-36 T 19-04-2016 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 SUPERFAMILY SSF54826 4 136 8.05E-51 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 SMART SM01192 139 423 3.5E-215 T 19-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 Hamap MF_00318 Enolase [eno]. 2 409 45.57 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 SMART SM01193 4 134 9.7E-84 T 19-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 Gene3D G3DSA:3.30.390.10 4 125 3.8E-52 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PIRSF PIRSF001400 1 422 7.6E-191 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 Gene3D G3DSA:3.20.20.120 129 421 2.5E-132 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 418 3.4E-129 T 19-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 Pfam PF03952 Enolase, N-terminal domain 4 134 7.0E-56 T 19-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 SUPERFAMILY SSF51604 138 420 6.93E-128 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 422 5.0E-204 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 332 346 5.0E-49 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 161 174 5.0E-49 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 361 378 5.0E-49 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 309 320 5.0E-49 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 37 51 5.0E-49 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PRINTS PR00148 Enolase signature 107 123 5.0E-49 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 PANTHER PTHR11902 4 428 3.1E-259 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_8200 8795e52cb0a24a0cab34ae09a55077fc 428 ProSitePatterns PS00164 Enolase signature. 332 345 - T 19-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 PANTHER PTHR13878:SF63 4 429 1.3E-112 T 19-04-2016 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 Pfam PF04030 D-arabinono-1,4-lactone oxidase 174 427 6.0E-75 T 19-04-2016 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 Gene3D G3DSA:3.30.43.10 3 70 7.0E-18 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 Pfam PF01565 FAD binding domain 15 150 4.6E-26 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 TIGRFAM TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase 4 429 1.6E-120 T 19-04-2016 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 PIRSF PIRSF000136 1 431 1.9E-117 T 19-04-2016 IPR010031 L-gulonolactone/D-arabinono-1,4-lactone oxidase GO:0016899|GO:0055114 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 15 48 - T 19-04-2016 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 Gene3D G3DSA:3.30.465.10 71 180 5.5E-32 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 SUPERFAMILY SSF56176 2 180 4.07E-47 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_0083 38604fde3466d08fa0bd99eae012849a 431 PANTHER PTHR13878 4 429 1.3E-112 T 19-04-2016 AMED_1893 4f538876465fec1871d0e4f44f455b4a 553 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 5 552 2.1E-194 T 19-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMED_1893 4f538876465fec1871d0e4f44f455b4a 553 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 4 553 31.578 T 19-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMED_1893 4f538876465fec1871d0e4f44f455b4a 553 PANTHER PTHR30607 4 553 1.8E-251 T 19-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMED_1893 4f538876465fec1871d0e4f44f455b4a 553 Pfam PF03814 Potassium-transporting ATPase A subunit 13 552 2.9E-215 T 19-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMED_1893 4f538876465fec1871d0e4f44f455b4a 553 PIRSF PIRSF001294 3 553 2.9E-206 T 19-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 Gene3D G3DSA:1.10.357.10 57 185 4.7E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 PANTHER PTHR30055:SF33 4 186 3.6E-44 T 19-04-2016 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 SUPERFAMILY SSF46689 5 68 9.45E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 Gene3D G3DSA:1.10.10.60 4 56 2.0E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 6.1E-18 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.1E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 SUPERFAMILY SSF48498 82 185 1.04E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7925 546fbeebd8ecfb02279a10b31d4c57fd 187 PANTHER PTHR30055 4 186 3.6E-44 T 19-04-2016 AMED_0468 838de102a83a528f64e30d8bc671d513 347 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 236 1.2E-19 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_0468 838de102a83a528f64e30d8bc671d513 347 Gene3D G3DSA:3.90.25.10 200 315 1.7E-4 T 19-04-2016 AMED_0468 838de102a83a528f64e30d8bc671d513 347 PANTHER PTHR10366:SF5 275 342 4.0E-98 T 19-04-2016 AMED_0468 838de102a83a528f64e30d8bc671d513 347 PANTHER PTHR10366:SF5 5 258 4.0E-98 T 19-04-2016 AMED_0468 838de102a83a528f64e30d8bc671d513 347 SUPERFAMILY SSF51735 4 316 3.9E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0468 838de102a83a528f64e30d8bc671d513 347 Gene3D G3DSA:3.40.50.720 6 191 5.2E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0468 838de102a83a528f64e30d8bc671d513 347 PANTHER PTHR10366 275 342 4.0E-98 T 19-04-2016 AMED_0468 838de102a83a528f64e30d8bc671d513 347 PANTHER PTHR10366 5 258 4.0E-98 T 19-04-2016 AMED_7354 42125804d6f519be17b64ba32ebe8ef9 205 SUPERFAMILY SSF48498 92 201 1.31E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7354 42125804d6f519be17b64ba32ebe8ef9 205 SUPERFAMILY SSF46689 14 89 6.14E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7354 42125804d6f519be17b64ba32ebe8ef9 205 PANTHER PTHR30055 15 198 1.7E-23 T 19-04-2016 AMED_7354 42125804d6f519be17b64ba32ebe8ef9 205 Gene3D G3DSA:1.10.357.10 15 201 1.2E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7354 42125804d6f519be17b64ba32ebe8ef9 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 3.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2616 f40563d2f06776c6ed310ecbf06390f6 187 Gene3D G3DSA:1.20.120.450 4 48 2.9E-5 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_2616 f40563d2f06776c6ed310ecbf06390f6 187 SUPERFAMILY SSF109854 4 130 7.32E-21 T 19-04-2016 AMED_2616 f40563d2f06776c6ed310ecbf06390f6 187 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 10 182 2.5E-42 T 19-04-2016 IPR017520 Conserved hypothetical protein CHP03086 AMED_2616 f40563d2f06776c6ed310ecbf06390f6 187 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 11 124 8.0E-13 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_2616 f40563d2f06776c6ed310ecbf06390f6 187 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 10 182 6.7E-24 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_1566 1a5a425f018509425289a548776a89ce 285 PANTHER PTHR30458 1 285 1.7E-101 T 19-04-2016 AMED_1566 1a5a425f018509425289a548776a89ce 285 SUPERFAMILY SSF47240 44 279 9.73E-60 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_1566 1a5a425f018509425289a548776a89ce 285 Gene3D G3DSA:1.20.1260.10 43 285 4.4E-79 T 19-04-2016 IPR012347 Ferritin-related AMED_1566 1a5a425f018509425289a548776a89ce 285 PANTHER PTHR30458:SF1 1 285 1.7E-101 T 19-04-2016 AMED_1566 1a5a425f018509425289a548776a89ce 285 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 51 285 8.6E-67 T 19-04-2016 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 UniPathway: UPA00930 AMED_1566 1a5a425f018509425289a548776a89ce 285 Pfam PF05138 Phenylacetic acid catabolic protein 43 285 1.9E-75 T 19-04-2016 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 UniPathway: UPA00930 AMED_4820 064e45e35fe3a858e3920c54dcd8825b 275 Pfam PF04672 S-adenosyl methyltransferase 9 272 4.4E-81 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_4820 064e45e35fe3a858e3920c54dcd8825b 275 SUPERFAMILY SSF53335 20 249 1.31E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4820 064e45e35fe3a858e3920c54dcd8825b 275 PIRSF PIRSF017393 1 273 2.3E-88 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_4820 064e45e35fe3a858e3920c54dcd8825b 275 Gene3D G3DSA:3.40.50.150 4 272 3.8E-99 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6512 4dde3f85774c3b1c83b21944865417c5 290 PANTHER PTHR14194:SF73 1 281 2.9E-87 T 19-04-2016 AMED_6512 4dde3f85774c3b1c83b21944865417c5 290 PANTHER PTHR14194 1 281 2.9E-87 T 19-04-2016 AMED_6512 4dde3f85774c3b1c83b21944865417c5 290 Gene3D G3DSA:3.40.50.720 2 217 1.2E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6512 4dde3f85774c3b1c83b21944865417c5 290 Pfam PF13460 NAD(P)H-binding 8 184 4.1E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6512 4dde3f85774c3b1c83b21944865417c5 290 SUPERFAMILY SSF51735 5 257 3.47E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2687 66560d7e936da69d73cea63a89e6be86 699 Gene3D G3DSA:3.40.50.1820 448 691 7.3E-77 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2687 66560d7e936da69d73cea63a89e6be86 699 Pfam PF00326 Prolyl oligopeptidase family 493 691 3.7E-48 T 19-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 SUPERFAMILY SSF53474 443 689 1.5E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2687 66560d7e936da69d73cea63a89e6be86 699 PANTHER PTHR11731 19 43 7.6E-115 T 19-04-2016 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 PANTHER PTHR11731 83 699 7.6E-115 T 19-04-2016 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 SUPERFAMILY SSF82171 106 388 1.7E-32 T 19-04-2016 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 PANTHER PTHR11731:SF110 19 43 7.6E-115 T 19-04-2016 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 PANTHER PTHR11731:SF110 83 699 7.6E-115 T 19-04-2016 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 Gene3D G3DSA:2.140.10.30 22 404 9.6E-60 T 19-04-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 AMED_2687 66560d7e936da69d73cea63a89e6be86 699 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 110 394 3.5E-36 T 19-04-2016 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 SMART SM00382 404 590 2.6E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2866 a054df79f20b0864b06bef46c3486df0 623 Pfam PF00664 ABC transporter transmembrane region 41 311 2.9E-39 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 Gene3D G3DSA:3.40.50.300 360 610 9.6E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2866 a054df79f20b0864b06bef46c3486df0 623 SUPERFAMILY SSF52540 380 615 1.59E-83 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2866 a054df79f20b0864b06bef46c3486df0 623 Pfam PF00005 ABC transporter 395 544 4.1E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 SUPERFAMILY SSF90123 27 345 1.96E-74 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 ProSitePatterns PS00211 ABC transporters family signature. 516 530 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 PANTHER PTHR24221 390 623 6.5E-208 T 19-04-2016 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 PANTHER PTHR24221 22 370 6.5E-208 T 19-04-2016 AMED_2866 a054df79f20b0864b06bef46c3486df0 623 Gene3D G3DSA:1.20.1560.10 27 345 2.7E-73 T 19-04-2016 AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 280 412 1.7E-9 T 19-04-2016 IPR010645 Uncharacterised MFS-type transporter YbfB AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 SUPERFAMILY SSF103473 16 415 6.54E-50 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 PANTHER PTHR23528 24 419 3.8E-45 T 19-04-2016 AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 Pfam PF07690 Major Facilitator Superfamily 55 277 1.9E-20 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 PANTHER PTHR23528:SF1 24 419 3.8E-45 T 19-04-2016 AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 Gene3D G3DSA:1.20.1250.20 235 416 2.2E-23 T 19-04-2016 AMED_0087 6755b3f04ff83b8c2ab867f2618a74e8 419 Gene3D G3DSA:1.20.1250.20 26 206 3.9E-22 T 19-04-2016 AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 125 2.9E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 224 2.9E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 241 261 2.9E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 176 2.9E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 39 56 2.9E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 205 2.9E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 38 223 0.0068 T 19-04-2016 AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 44 276 6.4E-66 T 19-04-2016 AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 SUPERFAMILY SSF51735 37 277 3.4E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PANTHER PTHR24322:SF105 42 170 6.0E-56 T 19-04-2016 AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PANTHER PTHR24322:SF105 186 218 6.0E-56 T 19-04-2016 AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 8.2E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 205 8.2E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 8.2E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PANTHER PTHR24322 42 170 6.0E-56 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 PANTHER PTHR24322 186 218 6.0E-56 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3058 d4d9ef0033ab8a5baeeec305e658c145 280 Gene3D G3DSA:3.40.50.720 33 276 2.1E-84 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2486 8d1559c5538a8f2aa1795e76dcf45e55 113 PANTHER PTHR40077 11 110 1.7E-20 T 19-04-2016 AMED_2486 8d1559c5538a8f2aa1795e76dcf45e55 113 Pfam PF12823 Domain of unknown function (DUF3817) 19 104 4.0E-26 T 19-04-2016 IPR023845 Domain of unknown function DUF3817, transmembrane AMED_2486 8d1559c5538a8f2aa1795e76dcf45e55 113 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 21 103 4.3E-30 T 19-04-2016 IPR023845 Domain of unknown function DUF3817, transmembrane AMED_0831 74c6d5c90872cbe7ddb46bee3be1cd38 126 Pfam PF09969 Uncharacterized conserved protein (DUF2203) 3 119 2.3E-32 T 19-04-2016 IPR018699 Protein of unknown function DUF2203 AMED_0831 74c6d5c90872cbe7ddb46bee3be1cd38 126 PIRSF PIRSF016498 1 123 3.2E-21 T 19-04-2016 IPR018699 Protein of unknown function DUF2203 AMED_1031 2277bafa3e57870b98d067b0d25590de 327 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 121 160 1.1E-20 T 19-04-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMED_1031 2277bafa3e57870b98d067b0d25590de 327 Gene3D G3DSA:3.30.60.70 121 160 1.1E-7 T 19-04-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMED_1031 2277bafa3e57870b98d067b0d25590de 327 SUPERFAMILY SSF51161 91 300 1.83E-36 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_1031 2277bafa3e57870b98d067b0d25590de 327 Gene3D G3DSA:2.160.10.10 162 323 1.7E-30 T 19-04-2016 AMED_1031 2277bafa3e57870b98d067b0d25590de 327 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 10 324 43.229 T 19-04-2016 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMED_1031 2277bafa3e57870b98d067b0d25590de 327 TIGRFAM TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 12 326 1.6E-155 T 19-04-2016 IPR019875 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, actinobacteria KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMED_1031 2277bafa3e57870b98d067b0d25590de 327 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 242 274 1.0E-12 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_0884 ba86d2962af82b5c579cba6d0cd316fc 140 Gene3D G3DSA:3.90.190.10 48 139 1.2E-15 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_0884 ba86d2962af82b5c579cba6d0cd316fc 140 SUPERFAMILY SSF52799 47 138 1.09E-16 T 19-04-2016 IPR029021 Protein-tyrosine phosphatase-like AMED_0884 ba86d2962af82b5c579cba6d0cd316fc 140 Pfam PF00102 Protein-tyrosine phosphatase 46 110 7.6E-6 T 19-04-2016 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 Pfam PF07687 Peptidase dimerisation domain 193 282 2.8E-10 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 Gene3D G3DSA:3.30.70.360 187 303 4.7E-39 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 SUPERFAMILY SSF55031 192 302 2.69E-30 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 Pfam PF01546 Peptidase family M20/M25/M40 74 390 3.6E-35 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 Gene3D G3DSA:3.40.630.10 304 394 8.9E-87 T 19-04-2016 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 Gene3D G3DSA:3.40.630.10 3 184 8.9E-87 T 19-04-2016 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 PANTHER PTHR11014:SF63 1 398 5.0E-125 T 19-04-2016 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 PIRSF PIRSF005962 2 397 1.4E-108 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 PANTHER PTHR11014 1 398 5.0E-125 T 19-04-2016 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 SUPERFAMILY SSF53187 4 203 8.68E-71 T 19-04-2016 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 SUPERFAMILY SSF53187 304 394 8.68E-71 T 19-04-2016 AMED_2546 5ea09f46d8119f194071a88790ecc2a4 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 379 4.8E-95 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_1303 b50a8cdb67c979201edac078beb2ad0e 475 PANTHER PTHR22935 12 336 4.1E-66 T 19-04-2016 AMED_1303 b50a8cdb67c979201edac078beb2ad0e 475 SUPERFAMILY SSF56601 19 323 7.57E-76 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_1303 b50a8cdb67c979201edac078beb2ad0e 475 Gene3D G3DSA:3.40.710.10 9 331 2.5E-72 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_1303 b50a8cdb67c979201edac078beb2ad0e 475 Pfam PF00144 Beta-lactamase 21 318 9.2E-60 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 Pfam PF00589 Phage integrase family 147 333 8.2E-6 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 SUPERFAMILY SSF56349 215 340 2.0E-37 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 SUPERFAMILY SSF56349 10 174 2.0E-37 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 Gene3D G3DSA:1.10.150.130 9 105 3.7E-11 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 Gene3D G3DSA:1.10.443.10 215 340 4.6E-19 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 Gene3D G3DSA:1.10.443.10 141 173 4.6E-19 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_5331 be48cc6c4aa1bd92df0afb4ee541f4e7 388 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 10 44 3.0E-6 T 19-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMED_3953 ca587b1bda94548c93e3a21bd0b70284 307 PANTHER PTHR30193:SF6 2 302 8.8E-64 T 19-04-2016 AMED_3953 ca587b1bda94548c93e3a21bd0b70284 307 Gene3D G3DSA:1.10.3720.10 75 302 2.6E-44 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3953 ca587b1bda94548c93e3a21bd0b70284 307 PANTHER PTHR30193 2 302 8.8E-64 T 19-04-2016 AMED_3953 ca587b1bda94548c93e3a21bd0b70284 307 SUPERFAMILY SSF161098 69 292 1.31E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3953 ca587b1bda94548c93e3a21bd0b70284 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 293 1.5E-10 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 PANTHER PTHR10937 1 347 1.1E-90 T 19-04-2016 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 Gene3D G3DSA:3.40.50.10490 185 346 5.9E-34 T 19-04-2016 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 SUPERFAMILY SSF53697 10 346 3.39E-67 T 19-04-2016 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 PANTHER PTHR10937:SF8 1 347 1.1E-90 T 19-04-2016 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 Gene3D G3DSA:3.40.50.10490 11 184 1.3E-28 T 19-04-2016 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 Pfam PF01380 SIS domain 208 290 3.6E-12 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_8584 8ec54a96a6ac14e66854dd8a4dec5f43 348 Pfam PF01380 SIS domain 48 168 9.2E-15 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 SMART SM00895 73 196 1.6E-9 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 SMART SM00345 5 63 1.7E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 PANTHER PTHR11751 2 89 1.2E-19 T 19-04-2016 AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 SUPERFAMILY SSF48008 70 195 2.12E-15 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 63 1.4E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 Gene3D G3DSA:1.20.120.530 69 192 1.9E-15 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 Gene3D G3DSA:1.10.10.10 1 64 1.6E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 Pfam PF07729 FCD domain 76 191 6.5E-16 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6058 22c4388eb902d3b52f0980f7693e5386 201 SUPERFAMILY SSF46785 3 67 3.9E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0306 946ed8b57de4a8d8bfbb97ca711c2e1e 249 Pfam PF01522 Polysaccharide deacetylase 68 188 1.8E-21 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_0306 946ed8b57de4a8d8bfbb97ca711c2e1e 249 PANTHER PTHR10587 69 246 3.3E-14 T 19-04-2016 AMED_0306 946ed8b57de4a8d8bfbb97ca711c2e1e 249 SUPERFAMILY SSF88713 62 248 5.44E-32 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_0306 946ed8b57de4a8d8bfbb97ca711c2e1e 249 Gene3D G3DSA:3.20.20.370 53 248 2.5E-30 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_4949 1f924b90b8fec1ecc4b2203f18dcb58a 326 SMART SM00327 88 272 5.2E-21 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4949 1f924b90b8fec1ecc4b2203f18dcb58a 326 Gene3D G3DSA:3.40.50.410 86 290 6.1E-22 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4949 1f924b90b8fec1ecc4b2203f18dcb58a 326 PANTHER PTHR10579 78 271 4.8E-23 T 19-04-2016 AMED_4949 1f924b90b8fec1ecc4b2203f18dcb58a 326 Pfam PF07584 Aerotolerance regulator N-terminal 4 78 1.9E-9 T 19-04-2016 IPR024163 Aerotolerance regulator, N-terminal AMED_4949 1f924b90b8fec1ecc4b2203f18dcb58a 326 SUPERFAMILY SSF53300 85 288 6.68E-30 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4949 1f924b90b8fec1ecc4b2203f18dcb58a 326 Pfam PF13519 von Willebrand factor type A domain 91 203 2.4E-18 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_3259 84a510044387851375a93e4f36e188e0 250 Pfam PF13419 Haloacid dehalogenase-like hydrolase 36 214 2.1E-28 T 19-04-2016 IPR023214 HAD-like domain AMED_3259 84a510044387851375a93e4f36e188e0 250 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 161 213 1.8E-7 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_3259 84a510044387851375a93e4f36e188e0 250 PANTHER PTHR18901:SF14 35 246 1.3E-46 T 19-04-2016 AMED_3259 84a510044387851375a93e4f36e188e0 250 SUPERFAMILY SSF56784 34 244 2.85E-49 T 19-04-2016 IPR023214 HAD-like domain AMED_3259 84a510044387851375a93e4f36e188e0 250 Gene3D G3DSA:3.40.50.1000 118 241 2.1E-36 T 19-04-2016 IPR023214 HAD-like domain AMED_3259 84a510044387851375a93e4f36e188e0 250 Gene3D G3DSA:3.40.50.1000 33 47 2.1E-36 T 19-04-2016 IPR023214 HAD-like domain AMED_3259 84a510044387851375a93e4f36e188e0 250 PANTHER PTHR18901 35 246 1.3E-46 T 19-04-2016 AMED_3259 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 158 174 3.3E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_3259 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 33 44 3.3E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_3259 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 176 196 3.3E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_3259 84a510044387851375a93e4f36e188e0 250 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 127 140 3.3E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_3259 84a510044387851375a93e4f36e188e0 250 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 208 7.2E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 PANTHER PTHR30173:SF13 3 186 2.0E-30 T 19-04-2016 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 SUPERFAMILY SSF88659 125 187 1.7E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 PANTHER PTHR30173 3 186 2.0E-30 T 19-04-2016 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 Pfam PF13490 Putative zinc-finger 201 235 7.2E-7 T 19-04-2016 IPR027383 Putative zinc-finger AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 Gene3D G3DSA:1.10.10.10 131 187 5.4E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 Pfam PF04542 Sigma-70 region 2 31 99 4.4E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 187 4.7E-20 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 SUPERFAMILY SSF88946 8 103 2.88E-17 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0988 5481004b6bf7bd10f3079fa1d297cb0d 705 Gene3D G3DSA:1.10.1740.10 8 105 1.1E-18 T 19-04-2016 AMED_3410 957f938cefb0dc9e3f8936b5aff18699 626 PANTHER PTHR31151:SF1 32 622 1.1E-175 T 19-04-2016 AMED_3410 957f938cefb0dc9e3f8936b5aff18699 626 SUPERFAMILY SSF48208 60 409 9.87E-27 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3410 957f938cefb0dc9e3f8936b5aff18699 626 PANTHER PTHR31151 32 622 1.1E-175 T 19-04-2016 AMED_3410 957f938cefb0dc9e3f8936b5aff18699 626 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 37 538 4.3E-131 T 19-04-2016 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 AMED_3410 957f938cefb0dc9e3f8936b5aff18699 626 Gene3D G3DSA:1.50.10.10 138 225 2.9E-8 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 SUPERFAMILY SSF48498 77 190 3.19E-24 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6701 4314be7241ff79257cd0742eb54010d7 199 PANTHER PTHR30055:SF40 2 177 7.8E-28 T 19-04-2016 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 Gene3D G3DSA:1.10.10.60 9 57 2.9E-22 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 63 1.7E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 SUPERFAMILY SSF46689 9 71 1.55E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 PANTHER PTHR30055 2 177 7.8E-28 T 19-04-2016 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 Pfam PF16859 Bacterial transcriptional repressor C-terminal 76 187 2.7E-29 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6701 4314be7241ff79257cd0742eb54010d7 199 Gene3D G3DSA:1.10.357.10 58 188 1.3E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.0E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6701 4314be7241ff79257cd0742eb54010d7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.0E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2014 458042d454ea6e77bf6e238b888bd6f3 292 Pfam PF01435 Peptidase family M48 88 288 1.3E-19 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_2014 458042d454ea6e77bf6e238b888bd6f3 292 Gene3D G3DSA:3.30.2010.10 73 155 5.3E-13 T 19-04-2016 AMED_2686 a1571bd43402c32c10075a48946691d1 283 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 45 256 2.4E-68 T 19-04-2016 IPR022488 Polyphosphate kinase-2-related AMED_2686 a1571bd43402c32c10075a48946691d1 283 Gene3D G3DSA:3.40.50.300 32 276 9.8E-91 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2686 a1571bd43402c32c10075a48946691d1 283 PANTHER PTHR34383 32 274 5.1E-98 T 19-04-2016 AMED_2686 a1571bd43402c32c10075a48946691d1 283 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 32 272 1.2E-97 T 19-04-2016 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 AMED_2686 a1571bd43402c32c10075a48946691d1 283 SUPERFAMILY SSF52540 67 243 2.13E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1959 cb63323da4eacd4c6f66d7f34e3471b4 79 Gene3D G3DSA:3.30.300.120 9 61 1.8E-5 T 19-04-2016 AMED_1959 cb63323da4eacd4c6f66d7f34e3471b4 79 Hamap MF_00088 UPF0109 protein . 4 75 20.513 T 19-04-2016 IPR020627 Uncharacterised protein family UPF0109 AMED_1959 cb63323da4eacd4c6f66d7f34e3471b4 79 PANTHER PTHR34654 2 79 1.0E-24 T 19-04-2016 AMED_1959 cb63323da4eacd4c6f66d7f34e3471b4 79 Pfam PF13083 KH domain 6 66 9.2E-19 T 19-04-2016 AMED_1959 cb63323da4eacd4c6f66d7f34e3471b4 79 SUPERFAMILY SSF54814 18 63 4.05E-8 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Gene3D G3DSA:3.40.50.720 1 208 1.8E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 SUPERFAMILY SSF51735 1 272 7.23E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 PANTHER PTHR11092 1 316 3.4E-67 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 PANTHER PTHR11092:SF0 1 316 3.4E-67 T 19-04-2016 AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 225 1.2E-10 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Gene3D G3DSA:3.90.25.10 209 258 4.6E-5 T 19-04-2016 AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 Pfam PF08338 Domain of unknown function (DUF1731) 276 310 3.4E-10 T 19-04-2016 IPR013549 Domain of unknown function DUF1731 AMED_4458 51e2b030a15bc9ff0b1ee1e5a3b0717f 324 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 304 7.8E-62 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 395 469 5.9E-13 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:2.30.38.10 308 379 4.8E-25 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Pfam PF00501 AMP-binding enzyme 11 387 2.6E-78 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:3.30.300.30 381 481 8.6E-30 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 PANTHER PTHR24095:SF137 3 549 1.2E-140 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:3.40.50.980 162 307 1.2E-25 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 139 150 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:3.40.50.980 3 161 2.8E-36 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 SUPERFAMILY SSF56801 3 481 8.24E-127 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 30 411 1.3E-106 T 19-04-2016 IPR010071 Amino acid adenylation domain AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 SUPERFAMILY SSF47336 486 549 2.45E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 PANTHER PTHR24095 3 549 1.2E-140 T 19-04-2016 AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Gene3D G3DSA:1.10.1200.10 487 550 3.7E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 Pfam PF00550 Phosphopantetheine attachment site 487 549 1.9E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 PRINTS PR00154 AMP-binding signature 134 145 7.0E-5 T 19-04-2016 IPR020459 AMP-binding AMED_5394 bd762d17b67802c0108cdb6f33af690c 558 PRINTS PR00154 AMP-binding signature 146 154 7.0E-5 T 19-04-2016 IPR020459 AMP-binding AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 29 146 3.0E-30 T 19-04-2016 IPR021131 Ribosomal protein L18e/L15P AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 PANTHER PTHR12934 1 147 2.7E-55 T 19-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 Gene3D G3DSA:3.100.10.10 34 147 2.8E-31 T 19-04-2016 AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 5 145 8.5E-42 T 19-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 6 148 19.273 T 19-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 SUPERFAMILY SSF52080 9 147 1.96E-37 T 19-04-2016 IPR021131 Ribosomal protein L18e/L15P AMED_0696 cc4070f9af1887e08005583e1a046fa6 148 ProSitePatterns PS00475 Ribosomal protein L15 signature. 111 142 - T 19-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3894 1cd03e84de111a01224609372bd85c6e 372 Gene3D G3DSA:3.30.420.40 215 338 1.5E-19 T 19-04-2016 AMED_3894 1cd03e84de111a01224609372bd85c6e 372 Gene3D G3DSA:3.30.420.40 84 214 1.1E-17 T 19-04-2016 AMED_3894 1cd03e84de111a01224609372bd85c6e 372 Pfam PF13412 Winged helix-turn-helix DNA-binding 18 59 4.8E-7 T 19-04-2016 AMED_3894 1cd03e84de111a01224609372bd85c6e 372 Gene3D G3DSA:1.10.10.10 14 81 3.7E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3894 1cd03e84de111a01224609372bd85c6e 372 Pfam PF00480 ROK family 98 356 1.5E-21 T 19-04-2016 IPR000600 ROK family AMED_3894 1cd03e84de111a01224609372bd85c6e 372 SUPERFAMILY SSF53067 86 360 6.22E-31 T 19-04-2016 AMED_3894 1cd03e84de111a01224609372bd85c6e 372 SUPERFAMILY SSF46785 15 81 2.61E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3894 1cd03e84de111a01224609372bd85c6e 372 PANTHER PTHR18964:SF108 64 364 7.1E-26 T 19-04-2016 AMED_3894 1cd03e84de111a01224609372bd85c6e 372 PANTHER PTHR18964 64 364 7.1E-26 T 19-04-2016 AMED_6792 c4462a01aa3cd5432450bb0a0b6cb003 399 Gene3D G3DSA:1.25.40.10 172 278 8.5E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6792 c4462a01aa3cd5432450bb0a0b6cb003 399 Gene3D G3DSA:1.25.40.10 324 376 8.5E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6792 c4462a01aa3cd5432450bb0a0b6cb003 399 SUPERFAMILY SSF47413 3 71 2.28E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6792 c4462a01aa3cd5432450bb0a0b6cb003 399 SMART SM00530 12 67 1.8E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_6792 c4462a01aa3cd5432450bb0a0b6cb003 399 Pfam PF13560 Helix-turn-helix domain 9 68 2.1E-12 T 19-04-2016 AMED_6792 c4462a01aa3cd5432450bb0a0b6cb003 399 Gene3D G3DSA:1.10.260.40 2 75 5.4E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8574 accc69c871f251e6e1292ed8e63708c6 272 Pfam PF08543 Phosphomethylpyrimidine kinase 12 261 2.8E-79 T 19-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 AMED_8574 accc69c871f251e6e1292ed8e63708c6 272 SUPERFAMILY SSF53613 1 268 2.34E-74 T 19-04-2016 IPR029056 Ribokinase-like AMED_8574 accc69c871f251e6e1292ed8e63708c6 272 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 263 7.8E-79 T 19-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMED_8574 accc69c871f251e6e1292ed8e63708c6 272 PANTHER PTHR20858 2 267 1.5E-95 T 19-04-2016 AMED_8574 accc69c871f251e6e1292ed8e63708c6 272 PANTHER PTHR20858:SF17 2 267 1.5E-95 T 19-04-2016 AMED_8574 accc69c871f251e6e1292ed8e63708c6 272 Gene3D G3DSA:3.40.1190.20 3 263 3.3E-88 T 19-04-2016 IPR029056 Ribokinase-like AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 PIRSF PIRSF001363 1 525 6.0E-228 T 19-04-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 ProSitePatterns PS00510 Malate synthase signature. 261 276 - T 19-04-2016 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 Pfam PF01274 Malate synthase 7 524 3.1E-186 T 19-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 Gene3D G3DSA:1.20.1220.12 410 518 6.9E-26 T 19-04-2016 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 PANTHER PTHR21631 1 524 6.9E-254 T 19-04-2016 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 Gene3D G3DSA:3.20.20.360 67 405 1.2E-117 T 19-04-2016 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 PANTHER PTHR21631:SF1 1 524 6.9E-254 T 19-04-2016 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 SUPERFAMILY SSF51645 7 524 3.01E-177 T 19-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1911 ba5c9f96c448fbf7e05217478d970bd7 525 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 18 524 4.4E-229 T 19-04-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 PANTHER PTHR36453 3 369 1.2E-77 T 19-04-2016 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 PANTHER PTHR36453 390 592 1.2E-77 T 19-04-2016 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 SMART SM00060 678 761 0.015 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 SMART SM00060 780 866 2.0E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 PANTHER PTHR36453:SF1 3 369 1.2E-77 T 19-04-2016 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 PANTHER PTHR36453:SF1 390 592 1.2E-77 T 19-04-2016 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 SUPERFAMILY SSF49265 693 875 3.54E-24 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Pfam PF13229 Right handed beta helix region 392 591 3.3E-6 T 19-04-2016 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 SUPERFAMILY SSF51126 354 616 1.33E-21 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 SUPERFAMILY SSF51126 40 130 1.33E-21 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.60.40.10 776 876 5.5E-12 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Pfam PF00041 Fibronectin type III domain 791 867 5.6E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Pfam PF00041 Fibronectin type III domain 692 764 1.8E-6 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.160.20.10 411 602 8.3E-15 T 19-04-2016 IPR012334 Pectin lyase fold AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.160.20.10 33 128 8.3E-15 T 19-04-2016 IPR012334 Pectin lyase fold AMED_1486 0fda77a9ea7de04d9638620506831bb6 878 Gene3D G3DSA:2.60.40.10 680 771 3.5E-11 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2598 11aaa731a829c7c3181b44a78b8cae56 459 Pfam PF01636 Phosphotransferase enzyme family 215 368 7.8E-9 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_2598 11aaa731a829c7c3181b44a78b8cae56 459 Gene3D G3DSA:3.90.1200.10 244 413 1.3E-5 T 19-04-2016 AMED_2598 11aaa731a829c7c3181b44a78b8cae56 459 SUPERFAMILY SSF56112 133 426 3.06E-19 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2151 f67c0a53fb6c34bb4ff4d3d3da869d33 476 ProSitePatterns PS00218 Amino acid permeases signature. 54 84 - T 19-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMED_2151 f67c0a53fb6c34bb4ff4d3d3da869d33 476 PANTHER PTHR11785 15 469 2.6E-259 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2151 f67c0a53fb6c34bb4ff4d3d3da869d33 476 PANTHER PTHR11785:SF25 15 469 2.6E-259 T 19-04-2016 AMED_2151 f67c0a53fb6c34bb4ff4d3d3da869d33 476 PIRSF PIRSF006060 11 474 5.2E-57 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2151 f67c0a53fb6c34bb4ff4d3d3da869d33 476 Pfam PF00324 Amino acid permease 29 467 1.6E-103 T 19-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AMED_2611 45c44b779dd6c2493af58b2a774625a3 240 Pfam PF11361 Protein of unknown function (DUF3159) 24 208 1.6E-66 T 19-04-2016 IPR016566 Uncharacterised conserved protein UCP010219 AMED_2611 45c44b779dd6c2493af58b2a774625a3 240 PIRSF PIRSF010219 2 222 8.2E-74 T 19-04-2016 IPR016566 Uncharacterised conserved protein UCP010219 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PANTHER PTHR10992:SF817 182 281 1.4E-71 T 19-04-2016 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 3.5E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.5E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.5E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 3.5E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PANTHER PTHR10992 7 139 1.4E-71 T 19-04-2016 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PANTHER PTHR10992 182 281 1.4E-71 T 19-04-2016 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 SUPERFAMILY SSF53474 11 280 1.45E-64 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 Pfam PF12697 Alpha/beta hydrolase family 31 273 1.2E-26 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 Gene3D G3DSA:3.40.50.1820 15 280 8.2E-65 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1805 2b9409aa034d6c957249e4c650574b7c 320 PANTHER PTHR10992:SF817 7 139 1.4E-71 T 19-04-2016 AMED_4837 e37f8c77cb7faaccfeb375ef187779bb 148 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 9 141 2.3E-22 T 19-04-2016 IPR011747 Conserved hypothetical protein CHP02241 AMED_4837 e37f8c77cb7faaccfeb375ef187779bb 148 PANTHER PTHR38009 1 145 1.1E-23 T 19-04-2016 AMED_4837 e37f8c77cb7faaccfeb375ef187779bb 148 Pfam PF06841 T4-like virus tail tube protein gp19 12 141 2.5E-27 T 19-04-2016 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 AMED_4837 e37f8c77cb7faaccfeb375ef187779bb 148 PANTHER PTHR38009:SF1 1 145 1.1E-23 T 19-04-2016 AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 Gene3D G3DSA:3.40.50.10170 4 149 1.5E-37 T 19-04-2016 AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 5 277 1.7E-70 T 19-04-2016 IPR003797 DegV AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 Pfam PF02645 Uncharacterised protein, DegV family COG1307 4 278 2.5E-68 T 19-04-2016 IPR003797 DegV AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 SUPERFAMILY SSF82549 4 278 3.14E-63 T 19-04-2016 AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 Gene3D G3DSA:3.30.1180.10 153 278 8.1E-34 T 19-04-2016 AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 PANTHER PTHR33434:SF2 1 279 6.5E-53 T 19-04-2016 AMED_1652 6e1410fb50cad7108e74ac67ef661f3c 281 PANTHER PTHR33434 1 279 6.5E-53 T 19-04-2016 AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 Gene3D G3DSA:3.40.50.1820 117 396 4.3E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 PANTHER PTHR17630:SF54 326 349 2.9E-44 T 19-04-2016 AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 PANTHER PTHR17630:SF54 5 255 2.9E-44 T 19-04-2016 AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 SUPERFAMILY SSF53474 12 254 1.89E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 SUPERFAMILY SSF53474 289 396 1.89E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 Pfam PF12697 Alpha/beta hydrolase family 142 359 7.6E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 Gene3D G3DSA:1.20.1440.110 9 112 3.7E-29 T 19-04-2016 AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 PANTHER PTHR17630 326 349 2.9E-44 T 19-04-2016 AMED_7766 ebe21f116803e707887e2c8861c4cdc0 396 PANTHER PTHR17630 5 255 2.9E-44 T 19-04-2016 AMED_1502 63a8d7f744317a34facad8daf865c694 255 PANTHER PTHR24220:SF447 7 254 1.5E-126 T 19-04-2016 AMED_1502 63a8d7f744317a34facad8daf865c694 255 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1502 63a8d7f744317a34facad8daf865c694 255 Pfam PF00005 ABC transporter 23 179 1.1E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1502 63a8d7f744317a34facad8daf865c694 255 PIRSF PIRSF039085 2 255 4.9E-116 T 19-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMED_1502 63a8d7f744317a34facad8daf865c694 255 Gene3D G3DSA:3.40.50.300 4 250 1.8E-80 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1502 63a8d7f744317a34facad8daf865c694 255 SUPERFAMILY SSF52540 5 249 2.85E-77 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1502 63a8d7f744317a34facad8daf865c694 255 SMART SM00382 30 227 4.1E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1502 63a8d7f744317a34facad8daf865c694 255 PANTHER PTHR24220 7 254 1.5E-126 T 19-04-2016 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF49899 630 830 7.26E-41 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF49303 233 322 3.17E-11 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 PANTHER PTHR10066 12 592 8.5E-236 T 19-04-2016 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:2.60.120.200 630 829 9.0E-38 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:2.60.40.320 222 319 3.5E-17 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 PANTHER PTHR10066:SF44 12 592 8.5E-236 T 19-04-2016 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF49785 59 229 1.34E-44 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:3.20.20.80 320 602 5.2E-47 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 672 823 1.3E-29 T 19-04-2016 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Gene3D G3DSA:2.60.120.260 59 221 2.1E-52 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF00703 Glycosyl hydrolases family 2 224 321 6.4E-9 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 366 478 4.1E-5 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 103 225 4.9E-12 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 SUPERFAMILY SSF51445 318 602 6.73E-62 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1306 6cd6a8687f204832a78dc4c6567c842d 831 SMART SM00560 689 821 8.0E-16 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 269 284 2.6E-44 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 336 2.6E-44 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 320 2.6E-44 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 300 2.6E-44 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 2.6E-44 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.6E-44 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 SUPERFAMILY SSF51905 5 171 3.6E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 SUPERFAMILY SSF51905 256 356 3.6E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.30.9.10 162 262 3.0E-10 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.30.9.10 317 338 3.0E-10 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PANTHER PTHR13789:SF90 1 356 4.9E-91 T 19-04-2016 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 Pfam PF01494 FAD binding domain 5 334 5.1E-81 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.50.50.60 2 161 1.7E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 Gene3D G3DSA:3.50.50.60 267 306 1.7E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1623 5e54af5b50e48f67d7b981d02c8d652b 481 PANTHER PTHR13789 1 356 4.9E-91 T 19-04-2016 AMED_2327 d55df268e9e04bd726d0e5e4e6f722eb 565 Pfam PF05960 Bacterial protein of unknown function (DUF885) 28 561 1.8E-154 T 19-04-2016 IPR010281 Protein of unknown function DUF885 AMED_2327 d55df268e9e04bd726d0e5e4e6f722eb 565 PANTHER PTHR33361 15 561 7.9E-80 T 19-04-2016 AMED_2327 d55df268e9e04bd726d0e5e4e6f722eb 565 PANTHER PTHR33361:SF6 15 561 7.9E-80 T 19-04-2016 AMED_0360 8fcbcd2a35eb39a96b6a06230af9badf 157 PANTHER PTHR10302 4 102 1.4E-21 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_0360 8fcbcd2a35eb39a96b6a06230af9badf 157 Gene3D G3DSA:2.40.50.140 3 105 1.3E-31 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0360 8fcbcd2a35eb39a96b6a06230af9badf 157 SUPERFAMILY SSF50249 4 157 2.86E-36 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0360 8fcbcd2a35eb39a96b6a06230af9badf 157 Hamap MF_00984 Single-stranded DNA-binding protein. 1 110 23.507 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_0360 8fcbcd2a35eb39a96b6a06230af9badf 157 Pfam PF00436 Single-strand binding protein family 3 103 3.8E-24 T 19-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 AMED_0360 8fcbcd2a35eb39a96b6a06230af9badf 157 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 112 1.2E-24 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_3707 bb65114344f852c0c66aa340a36251ae 308 PANTHER PTHR22911 8 301 6.6E-33 T 19-04-2016 AMED_3707 bb65114344f852c0c66aa340a36251ae 308 SUPERFAMILY SSF103481 42 149 4.32E-8 T 19-04-2016 AMED_3707 bb65114344f852c0c66aa340a36251ae 308 SUPERFAMILY SSF103481 194 294 2.48E-12 T 19-04-2016 AMED_3707 bb65114344f852c0c66aa340a36251ae 308 Pfam PF00892 EamA-like transporter family 157 289 4.0E-19 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_3707 bb65114344f852c0c66aa340a36251ae 308 Pfam PF00892 EamA-like transporter family 8 146 3.2E-13 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_7096 736774546052553d5c640a06874ec508 450 SUPERFAMILY SSF52540 65 385 4.71E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7096 736774546052553d5c640a06874ec508 450 PANTHER PTHR30258:SF3 13 392 1.6E-52 T 19-04-2016 AMED_7096 736774546052553d5c640a06874ec508 450 Gene3D G3DSA:3.30.450.90 80 179 8.4E-10 T 19-04-2016 AMED_7096 736774546052553d5c640a06874ec508 450 Gene3D G3DSA:3.40.50.300 187 405 8.4E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7096 736774546052553d5c640a06874ec508 450 Pfam PF00437 Type II/IV secretion system protein 86 371 4.3E-36 T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMED_7096 736774546052553d5c640a06874ec508 450 PANTHER PTHR30258 13 392 1.6E-52 T 19-04-2016 AMED_2494 b81b2f0af8e9d5600baa31bf0af03294 187 Pfam PF03029 Conserved hypothetical ATP binding protein 8 175 7.1E-27 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_2494 b81b2f0af8e9d5600baa31bf0af03294 187 PANTHER PTHR11711 5 173 1.7E-58 T 19-04-2016 AMED_2494 b81b2f0af8e9d5600baa31bf0af03294 187 Gene3D G3DSA:3.40.50.300 3 176 1.2E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2494 b81b2f0af8e9d5600baa31bf0af03294 187 SUPERFAMILY SSF52540 1 163 1.48E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2494 b81b2f0af8e9d5600baa31bf0af03294 187 PANTHER PTHR11711:SF117 5 173 1.7E-58 T 19-04-2016 AMED_4050 43a5fc9d2949a7aad17bdc8c6440f550 190 PANTHER PTHR30319:SF1 2 185 8.4E-22 T 19-04-2016 AMED_4050 43a5fc9d2949a7aad17bdc8c6440f550 190 Pfam PF08223 PaaX-like protein C-terminal domain 17 172 3.0E-34 T 19-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 AMED_4050 43a5fc9d2949a7aad17bdc8c6440f550 190 PANTHER PTHR30319 2 185 8.4E-22 T 19-04-2016 AMED_4724 98c90826d41baa61f21491494763376c 263 Gene3D G3DSA:3.20.20.190 13 259 9.2E-66 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_4724 98c90826d41baa61f21491494763376c 263 PANTHER PTHR23344 13 254 9.8E-54 T 19-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 AMED_4724 98c90826d41baa61f21491494763376c 263 PANTHER PTHR23344:SF10 13 254 9.8E-54 T 19-04-2016 AMED_4724 98c90826d41baa61f21491494763376c 263 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 18 245 7.7E-34 T 19-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMED_4724 98c90826d41baa61f21491494763376c 263 SUPERFAMILY SSF51695 12 251 4.97E-56 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_7263 270169ba044423964a8a8614df7a65d6 269 Gene3D G3DSA:3.40.50.1820 3 253 1.4E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7263 270169ba044423964a8a8614df7a65d6 269 SUPERFAMILY SSF53474 3 251 1.25E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7263 270169ba044423964a8a8614df7a65d6 269 PANTHER PTHR10992:SF818 4 252 5.1E-40 T 19-04-2016 AMED_7263 270169ba044423964a8a8614df7a65d6 269 PANTHER PTHR10992 4 252 5.1E-40 T 19-04-2016 AMED_7263 270169ba044423964a8a8614df7a65d6 269 Pfam PF00561 alpha/beta hydrolase fold 15 126 3.2E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7263 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 4.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7263 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 4.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7263 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 197 211 4.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7263 270169ba044423964a8a8614df7a65d6 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 4.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 Gene3D G3DSA:1.10.1740.10 6 90 8.3E-19 T 19-04-2016 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 SUPERFAMILY SSF88659 95 150 4.11E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 Pfam PF08281 Sigma-70, region 4 96 147 5.1E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 Pfam PF04542 Sigma-70 region 2 10 75 1.7E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 PANTHER PTHR30173 6 150 7.7E-28 T 19-04-2016 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 149 2.6E-18 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 SUPERFAMILY SSF88946 6 83 3.85E-17 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4232 2e4099dd2e350551a2fe9dd46aa23035 158 Gene3D G3DSA:1.10.10.10 96 151 2.3E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2322 a78bbd50d4457701adf38b59c3694150 308 SUPERFAMILY SSF48576 17 293 3.31E-76 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_2322 a78bbd50d4457701adf38b59c3694150 308 PANTHER PTHR31480 9 308 3.5E-90 T 19-04-2016 AMED_2322 a78bbd50d4457701adf38b59c3694150 308 Pfam PF00494 Squalene/phytoene synthase 27 282 9.4E-69 T 19-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 AMED_2322 a78bbd50d4457701adf38b59c3694150 308 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 169 194 - T 19-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 AMED_2322 a78bbd50d4457701adf38b59c3694150 308 Gene3D G3DSA:1.10.600.10 13 292 1.4E-83 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_2322 a78bbd50d4457701adf38b59c3694150 308 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 137 152 - T 19-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 AMED_9258 8e7e92adda3ef79443b5df01d6b66122 518 SUPERFAMILY SSF52540 44 244 1.25E-24 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9258 8e7e92adda3ef79443b5df01d6b66122 518 Gene3D G3DSA:3.40.50.300 46 260 1.1E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9258 8e7e92adda3ef79443b5df01d6b66122 518 Pfam PF00350 Dynamin family 49 203 2.5E-12 T 19-04-2016 IPR022812 Dynamin superfamily AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 PANTHER PTHR10739:SF26 308 449 3.3E-35 T 19-04-2016 AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 Pfam PF00294 pfkB family carbohydrate kinase 4 292 7.7E-21 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 Pfam PF01467 Cytidylyltransferase-like 326 420 8.8E-14 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 PANTHER PTHR10739 308 449 3.3E-35 T 19-04-2016 AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 SUPERFAMILY SSF53613 4 289 4.05E-33 T 19-04-2016 IPR029056 Ribokinase-like AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 SUPERFAMILY SSF52374 323 449 3.38E-21 T 19-04-2016 AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 Gene3D G3DSA:3.40.1190.20 3 292 1.3E-40 T 19-04-2016 IPR029056 Ribokinase-like AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 Gene3D G3DSA:3.40.50.620 323 442 2.1E-31 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4272 e2e3d8a14e11d63e9f06d8b8385af121 455 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 324 382 1.7E-14 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 91 188 9.4E-8 T 19-04-2016 IPR023214 HAD-like domain AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 Gene3D G3DSA:3.40.50.1000 1 210 4.9E-28 T 19-04-2016 IPR023214 HAD-like domain AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PANTHER PTHR12725:SF62 6 219 2.3E-33 T 19-04-2016 AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 SUPERFAMILY SSF56784 1 215 1.45E-37 T 19-04-2016 IPR023214 HAD-like domain AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PANTHER PTHR12725 6 219 2.3E-33 T 19-04-2016 AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 102 115 7.2E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 7.2E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_4620 6e4c1fa2ca2a3cdce08a27ef24f96c80 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 177 190 7.2E-9 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 1 185 7.5E-54 T 19-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 PANTHER PTHR12039 1 186 1.6E-48 T 19-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 SUPERFAMILY SSF52374 1 188 2.0E-51 T 19-04-2016 AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 Pfam PF01467 Cytidylyltransferase-like 2 159 4.2E-28 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 Gene3D G3DSA:3.40.50.620 1 188 1.2E-64 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 186 26.919 T 19-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 AMED_6695 7fc48e3438aa882f23c00a9b8caff6d7 189 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 2 62 3.3E-9 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMED_8269 419dca65648ad8ffca3334c69a860644 325 PANTHER PTHR30543:SF1 1 194 1.3E-51 T 19-04-2016 AMED_8269 419dca65648ad8ffca3334c69a860644 325 SUPERFAMILY SSF52218 1 170 6.04E-36 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_8269 419dca65648ad8ffca3334c69a860644 325 Gene3D G3DSA:3.40.50.360 3 180 3.6E-46 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_8269 419dca65648ad8ffca3334c69a860644 325 Pfam PF03358 NADPH-dependent FMN reductase 3 143 6.4E-34 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_8269 419dca65648ad8ffca3334c69a860644 325 Gene3D G3DSA:3.10.450.50 188 309 3.6E-22 T 19-04-2016 IPR032710 NTF2-like domain AMED_8269 419dca65648ad8ffca3334c69a860644 325 SUPERFAMILY SSF54427 186 313 5.23E-23 T 19-04-2016 IPR032710 NTF2-like domain AMED_8269 419dca65648ad8ffca3334c69a860644 325 PANTHER PTHR30543 1 194 1.3E-51 T 19-04-2016 AMED_8269 419dca65648ad8ffca3334c69a860644 325 Pfam PF13474 SnoaL-like domain 191 312 4.7E-18 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_9275 80292a7f185079983b61d149df6a3258 435 PANTHER PTHR11271:SF7 5 435 1.6E-125 T 19-04-2016 AMED_9275 80292a7f185079983b61d149df6a3258 435 SUPERFAMILY SSF51338 22 77 1.03E-5 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_9275 80292a7f185079983b61d149df6a3258 435 PANTHER PTHR11271 5 435 1.6E-125 T 19-04-2016 AMED_9275 80292a7f185079983b61d149df6a3258 435 Gene3D G3DSA:3.20.20.140 61 363 3.8E-89 T 19-04-2016 AMED_9275 80292a7f185079983b61d149df6a3258 435 SUPERFAMILY SSF51338 317 434 6.14E-21 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_9275 80292a7f185079983b61d149df6a3258 435 Pfam PF01979 Amidohydrolase family 55 408 2.5E-59 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_9275 80292a7f185079983b61d149df6a3258 435 SUPERFAMILY SSF51556 58 354 1.0E-84 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_9275 80292a7f185079983b61d149df6a3258 435 Gene3D G3DSA:2.30.40.10 24 60 7.2E-6 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_9275 80292a7f185079983b61d149df6a3258 435 Gene3D G3DSA:2.30.40.10 364 410 7.2E-6 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_0313 2b7f1808139eb78fe82fe6779417bc86 309 SUPERFAMILY SSF52151 24 231 3.92E-32 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0313 2b7f1808139eb78fe82fe6779417bc86 309 PANTHER PTHR14226:SF32 20 241 7.6E-30 T 19-04-2016 AMED_0313 2b7f1808139eb78fe82fe6779417bc86 309 PANTHER PTHR14226 20 241 7.6E-30 T 19-04-2016 AMED_0313 2b7f1808139eb78fe82fe6779417bc86 309 Pfam PF01734 Patatin-like phospholipase 29 199 2.5E-17 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 185 321 6.0E-40 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 Gene3D G3DSA:3.40.50.970 341 543 7.3E-54 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 Gene3D G3DSA:3.40.50.970 2 172 4.9E-69 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 Gene3D G3DSA:3.40.50.1220 179 340 5.0E-55 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 533 3.1E-33 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 PANTHER PTHR18968:SF14 1 554 7.4E-242 T 19-04-2016 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47|UniPathway: UPA00864 AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 SUPERFAMILY SSF52518 2 169 2.47E-57 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 SUPERFAMILY SSF52518 357 542 1.07E-46 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 166 1.9E-60 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 PANTHER PTHR18968 1 554 7.4E-242 T 19-04-2016 AMED_4582 39536995f63c6a38df542754c3fd2ae2 556 SUPERFAMILY SSF52467 149 350 3.09E-53 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 SMART SM00346 12 99 1.7E-21 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 Gene3D G3DSA:1.10.10.10 10 83 3.5E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 SUPERFAMILY SSF46785 12 81 1.98E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 Pfam PF01614 Bacterial transcriptional regulator 127 247 4.6E-29 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 Pfam PF09339 IclR helix-turn-helix domain 14 64 2.3E-18 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 SUPERFAMILY SSF55781 69 251 1.63E-47 T 19-04-2016 IPR029016 GAF domain-like AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 PANTHER PTHR30136:SF3 3 251 1.5E-80 T 19-04-2016 AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 PANTHER PTHR30136 3 251 1.5E-80 T 19-04-2016 AMED_1910 70a325bd1dfd061375187ec5ba6e87da 257 Gene3D G3DSA:3.30.450.40 84 251 4.3E-58 T 19-04-2016 IPR029016 GAF domain-like AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 PANTHER PTHR33164 23 156 4.2E-24 T 19-04-2016 AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 SMART SM00347 32 132 1.5E-14 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 SUPERFAMILY SSF46785 8 146 5.38E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 6.6E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 6.6E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 6.6E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 Pfam PF12802 MarR family 38 96 2.0E-13 T 19-04-2016 AMED_9157 9bf9622c7979c019a76bdd7b5eb95a32 161 Gene3D G3DSA:1.10.10.10 8 147 3.8E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1620 41b3b0529aca08b098800dfd434fcdac 231 Pfam PF10067 Predicted membrane protein (DUF2306) 57 215 3.2E-34 T 19-04-2016 IPR018750 Protein of unknown function DUF2306, membrane AMED_3318 197df0b653ca03cee0c58deefa41c145 392 Pfam PF02839 Carbohydrate binding domain 347 386 1.4E-9 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_3318 197df0b653ca03cee0c58deefa41c145 392 SMART SM00495 347 389 6.1E-10 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_3318 197df0b653ca03cee0c58deefa41c145 392 Gene3D G3DSA:2.60.120.200 44 278 4.5E-14 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3318 197df0b653ca03cee0c58deefa41c145 392 Gene3D G3DSA:2.10.10.20 343 392 1.4E-16 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_3318 197df0b653ca03cee0c58deefa41c145 392 SUPERFAMILY SSF51055 343 392 2.75E-13 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_3318 197df0b653ca03cee0c58deefa41c145 392 SUPERFAMILY SSF49899 41 278 1.43E-13 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 Gene3D G3DSA:3.40.50.720 2 231 5.9E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 PANTHER PTHR24322 8 183 7.4E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 SUPERFAMILY SSF51735 1 218 1.32E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4888 aa409ebc94f0c1457ddee5200e9adb06 233 Pfam PF00106 short chain dehydrogenase 5 195 8.3E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5473 80f5846b044610130f70b364112b15fc 196 Pfam PF00072 Response regulator receiver domain 3 99 1.6E-19 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5473 80f5846b044610130f70b364112b15fc 196 SMART SM00448 1 99 3.4E-11 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5473 80f5846b044610130f70b364112b15fc 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 188 5.0E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5473 80f5846b044610130f70b364112b15fc 196 Gene3D G3DSA:1.10.10.10 132 191 7.4E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5473 80f5846b044610130f70b364112b15fc 196 SMART SM00421 131 188 2.1E-22 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5473 80f5846b044610130f70b364112b15fc 196 SUPERFAMILY SSF52172 4 154 5.41E-23 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5473 80f5846b044610130f70b364112b15fc 196 PANTHER PTHR26402:SF151 1 190 5.7E-50 T 19-04-2016 AMED_5473 80f5846b044610130f70b364112b15fc 196 Gene3D G3DSA:3.40.50.2300 2 131 1.3E-26 T 19-04-2016 AMED_5473 80f5846b044610130f70b364112b15fc 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 148 175 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5473 80f5846b044610130f70b364112b15fc 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 164 1.5E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5473 80f5846b044610130f70b364112b15fc 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 134 148 1.5E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5473 80f5846b044610130f70b364112b15fc 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 176 1.5E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5473 80f5846b044610130f70b364112b15fc 196 PANTHER PTHR26402 1 190 5.7E-50 T 19-04-2016 AMED_6215 ec880cf89057f0049c161ff56042f26a 231 Pfam PF12697 Alpha/beta hydrolase family 6 224 4.3E-14 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6215 ec880cf89057f0049c161ff56042f26a 231 Gene3D G3DSA:3.40.50.1820 3 228 2.0E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6215 ec880cf89057f0049c161ff56042f26a 231 SUPERFAMILY SSF53474 4 227 1.75E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6215 ec880cf89057f0049c161ff56042f26a 231 PANTHER PTHR10992:SF832 2 226 2.2E-13 T 19-04-2016 AMED_6215 ec880cf89057f0049c161ff56042f26a 231 PANTHER PTHR10992 2 226 2.2E-13 T 19-04-2016 AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 PANTHER PTHR11601 42 427 3.7E-105 T 19-04-2016 AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 Gene3D G3DSA:3.40.640.10 55 292 1.2E-62 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 SUPERFAMILY SSF53383 40 420 1.48E-81 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 PANTHER PTHR11601:SF40 42 427 3.7E-105 T 19-04-2016 AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 Pfam PF00266 Aminotransferase class-V 44 411 9.1E-78 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 Gene3D G3DSA:3.90.1150.10 293 417 4.9E-12 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2968 4f478b1d27676f7e3c28342ed887ba1c 447 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 225 244 - T 19-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMED_3711 7d57322b8ce7505442855fc7c24244f6 167 PANTHER PTHR33164:SF1 1 160 3.3E-28 T 19-04-2016 AMED_3711 7d57322b8ce7505442855fc7c24244f6 167 SUPERFAMILY SSF46785 6 150 9.6E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3711 7d57322b8ce7505442855fc7c24244f6 167 PANTHER PTHR33164 1 160 3.3E-28 T 19-04-2016 AMED_3711 7d57322b8ce7505442855fc7c24244f6 167 Gene3D G3DSA:1.10.10.10 2 151 5.8E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3711 7d57322b8ce7505442855fc7c24244f6 167 SMART SM00347 33 136 2.3E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3711 7d57322b8ce7505442855fc7c24244f6 167 Pfam PF12802 MarR family 39 99 3.5E-10 T 19-04-2016 AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 313 3.9E-20 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 Gene3D G3DSA:3.40.50.970 341 527 4.6E-41 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 SUPERFAMILY SSF52518 354 528 1.21E-40 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 Gene3D G3DSA:3.40.50.970 2 170 6.0E-39 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 PANTHER PTHR18968 1 503 7.6E-81 T 19-04-2016 AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 166 1.6E-40 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 Gene3D G3DSA:3.40.50.1220 179 325 3.6E-28 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 378 520 5.8E-23 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 SUPERFAMILY SSF52518 2 172 1.11E-36 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_5855 c498413bd099cdde4efdc95ed9a27fff 539 SUPERFAMILY SSF52467 150 331 2.07E-29 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_0550 b2cd79afab37e35e0167dca24d00dc15 651 Pfam PF02706 Chain length determinant protein 14 138 4.7E-11 T 19-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 Pfam PF01547 Bacterial extracellular solute-binding protein 55 349 3.2E-36 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 PANTHER PTHR30061:SF24 16 438 9.8E-61 T 19-04-2016 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 Gene3D G3DSA:3.40.190.10 45 158 2.0E-17 T 19-04-2016 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 Gene3D G3DSA:3.40.190.10 337 373 2.0E-17 T 19-04-2016 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 PANTHER PTHR30061 16 438 9.8E-61 T 19-04-2016 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 SUPERFAMILY SSF53850 32 435 1.58E-67 T 19-04-2016 AMED_3317 76ca8f183fc69e730673bef35f8d4ff8 438 Gene3D G3DSA:3.40.190.10 160 336 2.3E-27 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 PIRSF PIRSF002741 9 534 2.8E-64 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 SUPERFAMILY SSF53850 45 541 7.41E-90 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 Gene3D G3DSA:3.40.190.10 216 329 7.7E-26 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 PANTHER PTHR30290 1 538 1.9E-97 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 Gene3D G3DSA:3.10.105.10 330 513 6.9E-42 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 Gene3D G3DSA:3.90.76.10 59 215 7.4E-25 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 PANTHER PTHR30290:SF10 1 538 1.9E-97 T 19-04-2016 AMED_8195 f1188215ec3b8e9f8ac0b971c1247de8 546 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 93 466 2.0E-56 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 SUPERFAMILY SSF56645 10 201 1.57E-34 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 PANTHER PTHR10909:SF275 12 372 4.2E-110 T 19-04-2016 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 81 5.9E-5 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 Gene3D G3DSA:2.40.110.10 109 194 7.6E-29 T 19-04-2016 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 SUPERFAMILY SSF47203 221 365 2.74E-17 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 PIRSF PIRSF016578 1 387 2.2E-137 T 19-04-2016 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 Gene3D G3DSA:1.20.140.10 195 382 1.6E-52 T 19-04-2016 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 233 365 6.6E-39 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 PANTHER PTHR10909 12 372 4.2E-110 T 19-04-2016 AMED_2522 033d5ec8570987fb3024b9c422cd2166 387 Gene3D G3DSA:1.10.540.10 3 107 2.0E-37 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_8896 f4747a2929d8f51b68aa0b3370ab2e4b 118 Pfam PF03795 YCII-related domain 2 111 1.7E-19 T 19-04-2016 IPR005545 YCII-related AMED_8896 f4747a2929d8f51b68aa0b3370ab2e4b 118 PANTHER PTHR35174 2 111 4.8E-21 T 19-04-2016 AMED_8896 f4747a2929d8f51b68aa0b3370ab2e4b 118 Gene3D G3DSA:3.30.70.1060 2 113 5.7E-32 T 19-04-2016 AMED_8896 f4747a2929d8f51b68aa0b3370ab2e4b 118 SUPERFAMILY SSF54909 2 112 1.77E-22 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5901 ff64cb60553cfccb25ae85f550103796 64 Pfam PF05331 Protein of unknown function (DUF742) 2 64 1.4E-19 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_5901 ff64cb60553cfccb25ae85f550103796 64 PANTHER PTHR36221 2 64 1.0E-16 T 19-04-2016 AMED_0930 2e092ca39734b178fcac1905ec763063 176 SUPERFAMILY SSF55729 12 158 4.15E-29 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0930 2e092ca39734b178fcac1905ec763063 176 PANTHER PTHR13256:SF21 2 157 3.9E-23 T 19-04-2016 AMED_0930 2e092ca39734b178fcac1905ec763063 176 Gene3D G3DSA:3.40.630.30 3 157 1.0E-31 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0930 2e092ca39734b178fcac1905ec763063 176 Pfam PF13302 Acetyltransferase (GNAT) domain 22 154 1.5E-21 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_0930 2e092ca39734b178fcac1905ec763063 176 PANTHER PTHR13256 2 157 3.9E-23 T 19-04-2016 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 PANTHER PTHR10584:SF166 3 306 1.8E-48 T 19-04-2016 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 SUPERFAMILY SSF53613 8 303 3.43E-57 T 19-04-2016 IPR029056 Ribokinase-like AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 43 67 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 PANTHER PTHR10584 3 306 1.8E-48 T 19-04-2016 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 179 194 2.2E-11 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 11 32 2.2E-11 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 38 57 2.2E-11 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 PRINTS PR00990 Ribokinase signature 223 234 2.2E-11 T 19-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 Pfam PF00294 pfkB family carbohydrate kinase 8 295 9.5E-48 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_4190 1dc7d85d10003f14726c9b50d63fa6b7 316 Gene3D G3DSA:3.40.1190.20 9 307 4.7E-62 T 19-04-2016 IPR029056 Ribokinase-like AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF52540 1004 1246 1.87E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:3.40.50.300 350 574 3.0E-73 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:3.40.50.300 1012 1242 2.4E-73 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF90123 679 992 3.53E-69 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00005 ABC transporter 367 515 3.4E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00005 ABC transporter 1030 1178 5.7E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00664 ABC transporter transmembrane region 36 303 3.0E-34 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Pfam PF00664 ABC transporter transmembrane region 696 964 3.3E-35 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 PANTHER PTHR24221 481 1247 1.5E-231 T 19-04-2016 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:1.20.1560.10 22 338 1.7E-60 T 19-04-2016 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 Gene3D G3DSA:1.20.1560.10 682 996 8.1E-72 T 19-04-2016 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF52540 340 582 3.37E-83 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 SUPERFAMILY SSF90123 22 338 9.94E-66 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 SMART SM00382 1038 1224 1.1E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7946 5c25edda8e80638d3f95612a678ab82b 1248 SMART SM00382 375 561 2.6E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1096 ff21e7239a49200c1594613d2311b66a 360 Gene3D G3DSA:1.20.58.340 284 360 2.9E-27 T 19-04-2016 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 Gene3D G3DSA:3.30.460.20 30 170 3.0E-43 T 19-04-2016 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 PANTHER PTHR21535:SF33 51 360 1.2E-64 T 19-04-2016 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 PANTHER PTHR21535 51 360 1.2E-64 T 19-04-2016 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 SUPERFAMILY SSF144083 295 357 2.35E-20 T 19-04-2016 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 54 360 3.5E-65 T 19-04-2016 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 Gene3D G3DSA:1.20.58.340 171 282 3.2E-38 T 19-04-2016 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 Pfam PF01544 CorA-like Mg2+ transporter protein 62 356 6.1E-67 T 19-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMED_1096 ff21e7239a49200c1594613d2311b66a 360 SUPERFAMILY SSF143865 30 293 7.72E-70 T 19-04-2016 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 SMART SM00060 161 235 2.4E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 SMART SM00060 255 326 2.8E-12 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.60.40.10 160 245 4.9E-19 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.60.40.10 253 334 1.8E-21 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 PANTHER PTHR19328 366 576 3.1E-51 T 19-04-2016 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Pfam PF00041 Fibronectin type III domain 256 332 3.2E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.60.120.260 21 157 9.4E-30 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 SUPERFAMILY SSF49265 160 339 6.45E-27 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Pfam PF00754 F5/8 type C domain 32 138 7.0E-22 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Gene3D G3DSA:2.120.10.30 355 678 1.5E-76 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 SUPERFAMILY SSF50952 356 661 8.24E-33 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 SUPERFAMILY SSF49785 23 153 5.81E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1337 a47957039f61d4f2c057186bd5ae393c 680 Pfam PF07995 Glucose / Sorbosone dehydrogenase 365 658 9.5E-59 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_1692 a7febc397ee40aa2272d88b2eb375bc5 298 Pfam PF00296 Luciferase-like monooxygenase 17 273 1.1E-12 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1692 a7febc397ee40aa2272d88b2eb375bc5 298 SUPERFAMILY SSF51679 25 298 3.2E-30 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1692 a7febc397ee40aa2272d88b2eb375bc5 298 Gene3D G3DSA:3.20.20.30 25 298 5.2E-23 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1692 a7febc397ee40aa2272d88b2eb375bc5 298 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 12 297 2.5E-70 T 19-04-2016 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted AMED_2662 e33ae90a97f64bb91d0275a04bd82480 309 SUPERFAMILY SSF51730 35 303 5.1E-72 T 19-04-2016 IPR029041 FAD-linked oxidoreductase-like AMED_2662 e33ae90a97f64bb91d0275a04bd82480 309 Gene3D G3DSA:3.20.20.220 34 303 1.2E-72 T 19-04-2016 IPR029041 FAD-linked oxidoreductase-like AMED_2662 e33ae90a97f64bb91d0275a04bd82480 309 PIRSF PIRSF000196 1 309 5.7E-115 T 19-04-2016 IPR008219 Proline dehydrogenase GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 AMED_2662 e33ae90a97f64bb91d0275a04bd82480 309 Pfam PF01619 Proline dehydrogenase 43 300 1.0E-36 T 19-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 AMED_7963 53743655ec7dceb0f9d602bd33d39182 158 Gene3D G3DSA:3.30.530.20 8 128 3.2E-9 T 19-04-2016 IPR023393 START-like domain AMED_7963 53743655ec7dceb0f9d602bd33d39182 158 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 7 133 1.8E-13 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_7963 53743655ec7dceb0f9d602bd33d39182 158 SUPERFAMILY SSF55961 4 132 6.52E-37 T 19-04-2016 AMED_8487 e7d94eff9e3a6431ebc2f17fd94b9507 626 Pfam PF07690 Major Facilitator Superfamily 211 557 8.4E-14 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_8487 e7d94eff9e3a6431ebc2f17fd94b9507 626 Gene3D G3DSA:1.20.1250.20 219 382 3.0E-9 T 19-04-2016 AMED_8487 e7d94eff9e3a6431ebc2f17fd94b9507 626 Gene3D G3DSA:1.20.1250.20 424 589 1.7E-6 T 19-04-2016 AMED_8487 e7d94eff9e3a6431ebc2f17fd94b9507 626 SUPERFAMILY SSF103473 205 591 1.02E-22 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7591 9128ae3aa89a2f62a6c96504424b03ca 140 Gene3D G3DSA:3.30.565.10 23 135 2.0E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7591 9128ae3aa89a2f62a6c96504424b03ca 140 SUPERFAMILY SSF55874 41 133 8.43E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7591 9128ae3aa89a2f62a6c96504424b03ca 140 Pfam PF13581 Histidine kinase-like ATPase domain 15 133 1.6E-20 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 Gene3D G3DSA:1.10.10.60 3 53 7.0E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 Gene3D G3DSA:1.10.357.10 54 186 6.5E-42 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 2.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 2.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 53 2.4E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 SUPERFAMILY SSF48498 74 186 1.63E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 SUPERFAMILY SSF46689 4 79 1.4E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8400 cf2a0eb8c6ae6cdf6dd50f11f89b1745 211 PANTHER PTHR30055 3 186 6.7E-28 T 19-04-2016 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 8.4E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 8.4E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 8.4E-6 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 Pfam PF03466 LysR substrate binding domain 115 297 1.1E-8 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_5094 01e00a1972744cee2c31e32bc0332451 314 SUPERFAMILY SSF53850 90 295 1.48E-23 T 19-04-2016 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:3.40.190.10 173 267 1.0E-14 T 19-04-2016 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 SUPERFAMILY SSF46785 3 84 8.94E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5094 01e00a1972744cee2c31e32bc0332451 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 4.3E-16 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:1.10.10.10 2 84 1.4E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5094 01e00a1972744cee2c31e32bc0332451 314 PANTHER PTHR30118 1 307 2.7E-73 T 19-04-2016 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:3.40.190.10 90 172 1.5E-17 T 19-04-2016 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 Gene3D G3DSA:3.40.190.10 273 299 1.5E-17 T 19-04-2016 AMED_5094 01e00a1972744cee2c31e32bc0332451 314 PANTHER PTHR30118:SF4 1 307 2.7E-73 T 19-04-2016 AMED_3071 f27550c664b06b86c6b4f4d20351ec1d 415 Pfam PF13416 Bacterial extracellular solute-binding protein 58 357 5.4E-44 T 19-04-2016 AMED_3071 f27550c664b06b86c6b4f4d20351ec1d 415 SUPERFAMILY SSF53850 43 410 1.19E-52 T 19-04-2016 AMED_3071 f27550c664b06b86c6b4f4d20351ec1d 415 PANTHER PTHR30061 1 409 6.3E-43 T 19-04-2016 AMED_3071 f27550c664b06b86c6b4f4d20351ec1d 415 Gene3D G3DSA:3.40.190.10 44 162 8.4E-16 T 19-04-2016 AMED_3071 f27550c664b06b86c6b4f4d20351ec1d 415 Gene3D G3DSA:3.40.190.10 163 348 9.8E-30 T 19-04-2016 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 Pfam PF12802 MarR family 50 112 1.2E-16 T 19-04-2016 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 4.3E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 4.3E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 4.3E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 4.3E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 SUPERFAMILY SSF46785 12 163 2.99E-37 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 PANTHER PTHR33164 1 162 1.7E-36 T 19-04-2016 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 PANTHER PTHR33164:SF4 1 162 1.7E-36 T 19-04-2016 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 SMART SM00347 45 148 3.6E-26 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1366 c1eddf7584eca48387c482b47ad1231f 167 Gene3D G3DSA:1.10.10.10 11 163 2.1E-41 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1672 4a0df4a501ce51992659cd5d03e3796d 99 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 23.961 T 19-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMED_1672 4a0df4a501ce51992659cd5d03e3796d 99 SUPERFAMILY SSF141000 4 94 2.62E-28 T 19-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMED_1672 4a0df4a501ce51992659cd5d03e3796d 99 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 21 91 2.1E-17 T 19-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMED_1672 4a0df4a501ce51992659cd5d03e3796d 99 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 5.4E-25 T 19-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMED_1672 4a0df4a501ce51992659cd5d03e3796d 99 PANTHER PTHR15004 4 98 2.8E-28 T 19-04-2016 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 SUPERFAMILY SSF64288 58 229 1.38E-20 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 2.7E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 2.7E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 69 1.5E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 Gene3D G3DSA:1.10.10.10 6 64 3.4E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 SMART SM00866 88 224 3.8E-9 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 SUPERFAMILY SSF46785 5 73 4.34E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 SMART SM00345 10 69 5.1E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 Gene3D G3DSA:3.40.1410.10 65 229 1.3E-17 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 Pfam PF07702 UTRA domain 94 224 1.4E-14 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 PANTHER PTHR11751 112 136 1.5E-16 T 19-04-2016 AMED_8992 4be7eaac0c9aa2a64a486a9e40a1c8c6 232 PANTHER PTHR11751 4 71 1.5E-16 T 19-04-2016 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 Gene3D G3DSA:1.10.357.10 27 206 2.4E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 83 5.6E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 59 82 3.2E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 51 3.2E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 50 80 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_4868 a3d63a056e390df48e04626296cf2aac 210 PANTHER PTHR30055 21 135 2.9E-38 T 19-04-2016 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 PANTHER PTHR30055:SF37 21 135 2.9E-38 T 19-04-2016 AMED_4868 a3d63a056e390df48e04626296cf2aac 210 SUPERFAMILY SSF46689 28 97 3.13E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 PANTHER PTHR22769 39 156 3.3E-25 T 19-04-2016 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 PANTHER PTHR22769:SF42 39 156 3.3E-25 T 19-04-2016 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 ProSitePatterns PS00893 Nudix box signature. 58 79 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 Gene3D G3DSA:3.90.79.10 17 156 3.2E-36 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 Pfam PF00293 NUDIX domain 24 136 4.7E-17 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 SUPERFAMILY SSF55811 20 160 5.69E-27 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_0371 65940372ad788f3c717c8057d2b158ba 174 PRINTS PR00502 NUDIX hydrolase family signature 67 82 1.2E-6 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_0371 65940372ad788f3c717c8057d2b158ba 174 PRINTS PR00502 NUDIX hydrolase family signature 53 67 1.2E-6 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 Pfam PF01494 FAD binding domain 2 335 1.8E-80 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PANTHER PTHR13789:SF90 1 346 9.9E-89 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 270 285 1.4E-45 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 303 321 1.4E-45 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 321 337 1.4E-45 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 142 157 1.4E-45 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 301 1.4E-45 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.4E-45 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 PANTHER PTHR13789 1 346 9.9E-89 T 19-04-2016 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 Gene3D G3DSA:3.50.50.60 1 168 1.7E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 Gene3D G3DSA:3.50.50.60 258 339 1.7E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 SUPERFAMILY SSF51905 257 344 2.74E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2918 2ed7de6c6b00e3fe65f17f843298fff2 479 SUPERFAMILY SSF51905 2 163 2.74E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7673 72fdc2f249608f4fee62a8acb35d034f 172 SMART SM00506 2 136 6.7E-45 T 19-04-2016 IPR002589 Macro domain AMED_7673 72fdc2f249608f4fee62a8acb35d034f 172 PANTHER PTHR11106 2 167 1.1E-65 T 19-04-2016 AMED_7673 72fdc2f249608f4fee62a8acb35d034f 172 Gene3D G3DSA:3.40.220.10 2 166 1.3E-56 T 19-04-2016 AMED_7673 72fdc2f249608f4fee62a8acb35d034f 172 Pfam PF01661 Macro domain 19 136 6.6E-40 T 19-04-2016 IPR002589 Macro domain AMED_7673 72fdc2f249608f4fee62a8acb35d034f 172 SUPERFAMILY SSF52949 1 167 8.92E-52 T 19-04-2016 AMED_5413 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 Pfam PF06722 Protein of unknown function (DUF1205) 175 273 5.7E-15 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5413 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 Gene3D G3DSA:3.40.50.2000 239 364 1.3E-18 T 19-04-2016 AMED_5413 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 Gene3D G3DSA:3.40.50.2000 2 141 7.7E-32 T 19-04-2016 AMED_5413 8d6dbb303b50a9d3ca024b1ae5ebc51b 386 SUPERFAMILY SSF53756 2 383 2.66E-64 T 19-04-2016 AMED_7954 61919af3d92142689f8c9b818085329e 326 SUPERFAMILY SSF51679 9 319 9.57E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7954 61919af3d92142689f8c9b818085329e 326 Gene3D G3DSA:3.20.20.30 8 320 2.7E-53 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7954 61919af3d92142689f8c9b818085329e 326 PANTHER PTHR30011:SF5 18 208 2.8E-22 T 19-04-2016 AMED_7954 61919af3d92142689f8c9b818085329e 326 PANTHER PTHR30011 18 208 2.8E-22 T 19-04-2016 AMED_7954 61919af3d92142689f8c9b818085329e 326 Pfam PF00296 Luciferase-like monooxygenase 10 296 3.5E-41 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 ProSitePatterns PS00737 Thiolases signature 2. 349 365 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 Pfam PF02803 Thiolase, C-terminal domain 281 402 4.5E-46 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 PANTHER PTHR18919:SF12 2 229 3.5E-234 T 19-04-2016 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 19-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 PIRSF PIRSF000429 2 403 4.3E-111 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 PANTHER PTHR18919:SF12 251 403 3.5E-234 T 19-04-2016 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 Gene3D G3DSA:3.40.47.10 186 286 2.7E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 Gene3D G3DSA:3.40.47.10 5 127 2.7E-56 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 Pfam PF00108 Thiolase, N-terminal domain 6 229 1.3E-46 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 Gene3D G3DSA:3.40.47.10 148 185 2.7E-58 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 Gene3D G3DSA:3.40.47.10 287 402 2.7E-58 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 SUPERFAMILY SSF53901 281 402 4.49E-44 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 401 7.7E-131 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 PANTHER PTHR18919 251 403 3.5E-234 T 19-04-2016 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 SUPERFAMILY SSF53901 3 274 6.48E-66 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7894 e7d0686d5c59466d5894b2a6e7cb2b77 403 PANTHER PTHR18919 2 229 3.5E-234 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 PANTHER PTHR11615:SF114 286 778 2.7E-271 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 PANTHER PTHR11615:SF114 1 268 2.7E-271 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 SUPERFAMILY SSF53706 60 645 7.33E-145 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 24 767 8.8E-296 T 19-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 Pfam PF01568 Molydopterin dinucleotide binding domain 654 759 1.4E-10 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 PANTHER PTHR11615 286 778 2.7E-271 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 PANTHER PTHR11615 1 268 2.7E-271 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 Gene3D G3DSA:3.40.228.10 199 405 2.6E-59 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 Gene3D G3DSA:3.40.50.740 125 198 6.5E-54 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 Gene3D G3DSA:3.40.50.740 406 639 6.5E-54 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 Pfam PF00384 Molybdopterin oxidoreductase 125 504 1.3E-28 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 Gene3D G3DSA:2.40.40.20 652 771 2.5E-11 T 19-04-2016 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 PIRSF PIRSF000144 3 772 0.0 T 19-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AMED_6728 839d134976030bd8b01efd68f2a235b3 779 SUPERFAMILY SSF50692 650 771 6.78E-18 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_7955 46d741db77a6534fb41f4e6b43361747 201 PANTHER PTHR30086 3 201 9.7E-58 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7955 46d741db77a6534fb41f4e6b43361747 201 PIRSF PIRSF006324 2 201 6.5E-55 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_7955 46d741db77a6534fb41f4e6b43361747 201 PANTHER PTHR30086:SF3 3 201 9.7E-58 T 19-04-2016 AMED_7955 46d741db77a6534fb41f4e6b43361747 201 Pfam PF01810 LysE type translocator 17 200 8.8E-36 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.1E-46 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 9.7E-35 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 19-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 3.7E-21 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 3.7E-21 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 3.7E-21 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 SMART SM01403 7 101 2.2E-55 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 SUPERFAMILY SSF54999 5 100 8.5E-37 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 Gene3D G3DSA:3.30.70.600 4 100 9.2E-43 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 PANTHER PTHR11700 1 101 5.2E-51 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMED_0676 6d877a40c8fd3c99a09fef450c8d1dd2 101 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 101 24.603 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 Pfam PF00561 alpha/beta hydrolase fold 17 246 6.7E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 234 256 3.4E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 81 94 3.4E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 67 80 3.4E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 PRINTS PR00412 Epoxide hydrolase signature 201 217 3.4E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 SUPERFAMILY SSF53474 14 257 1.01E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 Gene3D G3DSA:3.40.50.1820 15 258 5.2E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 PANTHER PTHR10992 196 259 1.7E-32 T 19-04-2016 AMED_3969 4eedc6a8ac618749b32f571d575b15bf 261 PANTHER PTHR10992 14 175 1.7E-32 T 19-04-2016 AMED_6699 2f09e6afaba55ace22685e1be612570a 128 PANTHER PTHR35176 1 128 1.3E-12 T 19-04-2016 AMED_6699 2f09e6afaba55ace22685e1be612570a 128 SUPERFAMILY SSF50475 3 125 2.68E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6699 2f09e6afaba55ace22685e1be612570a 128 PANTHER PTHR35176:SF3 1 128 1.3E-12 T 19-04-2016 AMED_6699 2f09e6afaba55ace22685e1be612570a 128 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 8 127 9.3E-28 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_6699 2f09e6afaba55ace22685e1be612570a 128 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 6 82 7.9E-11 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_6699 2f09e6afaba55ace22685e1be612570a 128 Gene3D G3DSA:2.30.110.10 5 127 3.1E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 Gene3D G3DSA:3.30.70.260 325 387 1.4E-5 T 19-04-2016 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 PANTHER PTHR10314 2 356 9.8E-141 T 19-04-2016 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 SUPERFAMILY SSF53686 5 311 1.28E-89 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 Gene3D G3DSA:3.40.50.1100 71 319 2.3E-73 T 19-04-2016 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 44 57 - T 19-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 SUPERFAMILY SSF55021 328 384 1.34E-5 T 19-04-2016 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 23 399 1.7E-125 T 19-04-2016 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00052 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 PANTHER PTHR10314:SF17 2 356 9.8E-141 T 19-04-2016 AMED_8101 3d6548c5f19a50a9933a7f2399d0b1fc 400 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 304 1.8E-78 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8667 c44d8747eed0089fc14184533394d093 288 Pfam PF12697 Alpha/beta hydrolase family 43 244 2.5E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8667 c44d8747eed0089fc14184533394d093 288 SUPERFAMILY SSF53474 3 258 6.23E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8667 c44d8747eed0089fc14184533394d093 288 Gene3D G3DSA:3.40.50.1820 3 235 4.8E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 SUPERFAMILY SSF51735 1 144 2.08E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Gene3D G3DSA:3.40.50.720 1 144 2.8E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 5.6E-10 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 59 69 5.6E-10 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 48 58 5.6E-10 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 72 86 5.6E-10 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 5.6E-10 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 SUPERFAMILY SSF116726 133 216 1.44E-14 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Pfam PF02080 TrkA-C domain 149 213 2.0E-14 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Pfam PF02254 TrkA-N domain 3 118 4.4E-27 T 19-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 Gene3D G3DSA:3.30.70.1450 145 208 1.2E-10 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2612 d9c3c5fb1f2b3827adfe237e2ea2a07e 218 PANTHER PTHR16254 1 159 9.2E-26 T 19-04-2016 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 Gene3D G3DSA:1.10.357.10 6 196 3.7E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 8.5E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 PANTHER PTHR30055 7 80 1.5E-12 T 19-04-2016 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 PANTHER PTHR30055:SF72 7 80 1.5E-12 T 19-04-2016 AMED_2707 808eabcadb053f6516c61671fd9d5792 231 SUPERFAMILY SSF46689 3 74 2.49E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0781 a03e95f641a95e70da8c5f8c63a388de 181 Pfam PF12867 DinB superfamily 12 170 6.2E-18 T 19-04-2016 IPR024775 DinB-like domain AMED_0781 a03e95f641a95e70da8c5f8c63a388de 181 Gene3D G3DSA:1.20.120.450 110 177 9.0E-5 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_0781 a03e95f641a95e70da8c5f8c63a388de 181 SUPERFAMILY SSF109854 67 178 9.31E-15 T 19-04-2016 AMED_0781 a03e95f641a95e70da8c5f8c63a388de 181 SUPERFAMILY SSF109854 7 44 5.95E-5 T 19-04-2016 AMED_3604 f730631b78ed18b7aa98dd8e16a7a074 316 Gene3D G3DSA:3.40.50.1820 4 311 3.8E-75 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3604 f730631b78ed18b7aa98dd8e16a7a074 316 PANTHER PTHR23024:SF119 87 316 1.9E-66 T 19-04-2016 AMED_3604 f730631b78ed18b7aa98dd8e16a7a074 316 Pfam PF07859 alpha/beta hydrolase fold 87 293 1.5E-57 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_3604 f730631b78ed18b7aa98dd8e16a7a074 316 SUPERFAMILY SSF53474 39 313 1.25E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3604 f730631b78ed18b7aa98dd8e16a7a074 316 PANTHER PTHR23024 87 316 1.9E-66 T 19-04-2016 AMED_0548 10aaa0f70536cbd9059ebe33de5673ea 358 PANTHER PTHR12526 34 353 1.4E-42 T 19-04-2016 AMED_0548 10aaa0f70536cbd9059ebe33de5673ea 358 Pfam PF13579 Glycosyl transferase 4-like domain 1 150 9.5E-12 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_0548 10aaa0f70536cbd9059ebe33de5673ea 358 SUPERFAMILY SSF53756 18 356 2.83E-50 T 19-04-2016 AMED_0548 10aaa0f70536cbd9059ebe33de5673ea 358 Gene3D G3DSA:3.40.50.2000 165 331 4.4E-10 T 19-04-2016 AMED_0548 10aaa0f70536cbd9059ebe33de5673ea 358 Pfam PF13692 Glycosyl transferases group 1 176 320 1.3E-22 T 19-04-2016 AMED_1790 f5371e3ffd410672619dd0ed2cf0fd67 230 SUPERFAMILY SSF53933 45 135 7.94E-32 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_1790 f5371e3ffd410672619dd0ed2cf0fd67 230 Pfam PF00545 ribonuclease 172 225 3.6E-7 T 19-04-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 AMED_1790 f5371e3ffd410672619dd0ed2cf0fd67 230 Pfam PF00545 ribonuclease 53 132 4.3E-27 T 19-04-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 AMED_1790 f5371e3ffd410672619dd0ed2cf0fd67 230 Gene3D G3DSA:3.10.450.30 46 135 2.7E-36 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_1790 f5371e3ffd410672619dd0ed2cf0fd67 230 Gene3D G3DSA:3.10.450.30 150 227 1.3E-14 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_1790 f5371e3ffd410672619dd0ed2cf0fd67 230 SUPERFAMILY SSF53933 153 227 1.11E-12 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_2770 189615acf48e5baf626e974570c39f6d 399 SUPERFAMILY SSF55874 281 383 1.55E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2770 189615acf48e5baf626e974570c39f6d 399 Pfam PF07730 Histidine kinase 203 267 9.8E-16 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2770 189615acf48e5baf626e974570c39f6d 399 PANTHER PTHR24421 151 397 8.7E-58 T 19-04-2016 AMED_2770 189615acf48e5baf626e974570c39f6d 399 PANTHER PTHR24421:SF26 151 397 8.7E-58 T 19-04-2016 AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1187 1216 0.001 T 19-04-2016 IPR006530 YD repeat AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1220 1250 2.9E-5 T 19-04-2016 IPR006530 YD repeat AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1569 1604 3.4E-4 T 19-04-2016 IPR006530 YD repeat AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 Gene3D G3DSA:2.170.16.10 1885 2035 1.0E-20 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 PANTHER PTHR11219 1336 1797 6.3E-43 T 19-04-2016 AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 Pfam PF07591 Pretoxin HINT domain 1895 2029 1.1E-14 T 19-04-2016 AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 Pfam PF05593 RHS Repeat 1549 1585 4.6E-6 T 19-04-2016 IPR031325 RHS repeat AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 SUPERFAMILY SSF51294 1883 2027 1.37E-14 T 19-04-2016 IPR028992 Hedgehog/Intein (Hint) domain AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1672 1751 1.3E-16 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 SMART SM00306 1885 1986 0.0043 T 19-04-2016 IPR003587 Hint domain N-terminal AMED_7349 db5073217f6aa69f9a28770a844cd718 2192 PANTHER PTHR11219:SF46 1336 1797 6.3E-43 T 19-04-2016 AMED_5221 8c7d82714d91c132db868a30cc007dce 83 Pfam PF14019 Protein of unknown function (DUF4235) 6 82 3.9E-26 T 19-04-2016 IPR025329 Protein of unknown function DUF4235 AMED_5256 633495ab0fb181b5f04ef2622da879ae 203 PANTHER PTHR21327 7 203 3.2E-81 T 19-04-2016 AMED_5256 633495ab0fb181b5f04ef2622da879ae 203 SUPERFAMILY SSF142695 18 173 9.02E-53 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_5256 633495ab0fb181b5f04ef2622da879ae 203 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 198 35.888 T 19-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_5256 633495ab0fb181b5f04ef2622da879ae 203 Pfam PF00925 GTP cyclohydrolase II 22 172 3.7E-56 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_4082 de41685894207c9622d660d86b80ca42 295 SUPERFAMILY SSF46955 16 82 5.95E-12 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4082 de41685894207c9622d660d86b80ca42 295 SUPERFAMILY SSF52242 175 262 1.02E-9 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4082 de41685894207c9622d660d86b80ca42 295 SMART SM00422 16 85 3.4E-7 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4082 de41685894207c9622d660d86b80ca42 295 Pfam PF13411 MerR HTH family regulatory protein 17 74 2.5E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4082 de41685894207c9622d660d86b80ca42 295 Gene3D G3DSA:1.10.1660.10 17 83 3.2E-11 T 19-04-2016 AMED_4082 de41685894207c9622d660d86b80ca42 295 Gene3D G3DSA:3.40.50.280 181 252 5.4E-5 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 212 9.4E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 200 9.4E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 184 9.4E-14 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PANTHER PTHR26402:SF564 3 133 4.1E-86 T 19-04-2016 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PANTHER PTHR26402:SF564 153 229 4.1E-86 T 19-04-2016 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 Gene3D G3DSA:1.10.10.10 130 227 1.7E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 Gene3D G3DSA:3.40.50.2300 3 129 2.1E-36 T 19-04-2016 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 SMART SM00421 167 224 1.6E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PANTHER PTHR26402 3 133 4.1E-86 T 19-04-2016 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 PANTHER PTHR26402 153 229 4.1E-86 T 19-04-2016 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 Pfam PF00196 Bacterial regulatory proteins, luxR family 169 224 3.8E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 SMART SM00448 3 115 2.3E-29 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 SUPERFAMILY SSF46894 162 226 1.46E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 SUPERFAMILY SSF52172 3 133 1.18E-31 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3552 eab817efd98a2bf2a1bb473dc96e8843 234 Pfam PF00072 Response regulator receiver domain 5 116 7.8E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 PIRSF PIRSF039085 1 254 4.5E-124 T 19-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 PANTHER PTHR24220:SF327 6 254 5.8E-136 T 19-04-2016 AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 SUPERFAMILY SSF52540 5 248 2.92E-79 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 Gene3D G3DSA:3.40.50.300 3 249 4.7E-83 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 Pfam PF00005 ABC transporter 20 178 1.1E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 PANTHER PTHR24220 6 254 5.8E-136 T 19-04-2016 AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_9207 9828555e3022bf1252e0f8b310b265aa 257 SMART SM00382 29 226 6.7E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3198 91e3aca2c0f290b179592ce28febf869 361 SUPERFAMILY SSF47413 27 73 1.63E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 Gene3D G3DSA:3.40.50.2300 101 191 8.4E-12 T 19-04-2016 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 Pfam PF13377 Periplasmic binding protein-like domain 192 351 7.1E-20 T 19-04-2016 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 PANTHER PTHR30146:SF48 27 355 6.2E-46 T 19-04-2016 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 Gene3D G3DSA:1.10.260.40 27 73 6.8E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 Pfam PF00356 Bacterial regulatory proteins, lacI family 29 72 4.4E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 SMART SM00354 27 94 9.6E-12 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 PANTHER PTHR30146 27 355 6.2E-46 T 19-04-2016 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 ProSitePatterns PS00356 LacI-type HTH domain signature. 30 48 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 Gene3D G3DSA:3.40.50.2300 192 352 4.4E-18 T 19-04-2016 AMED_3198 91e3aca2c0f290b179592ce28febf869 361 SUPERFAMILY SSF53822 99 342 1.35E-27 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_8925 7fa00c60148a470e60b4fccc6c0360d6 262 SMART SM00382 31 210 1.2E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8925 7fa00c60148a470e60b4fccc6c0360d6 262 Gene3D G3DSA:3.40.50.300 2 218 4.0E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8925 7fa00c60148a470e60b4fccc6c0360d6 262 PANTHER PTHR24220 4 217 5.3E-90 T 19-04-2016 AMED_8925 7fa00c60148a470e60b4fccc6c0360d6 262 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8925 7fa00c60148a470e60b4fccc6c0360d6 262 SUPERFAMILY SSF52540 3 230 1.04E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8925 7fa00c60148a470e60b4fccc6c0360d6 262 Pfam PF00005 ABC transporter 22 161 1.2E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1825 56bcf6fe4befb7f4a54b76994227637f 182 Pfam PF01494 FAD binding domain 88 142 3.5E-7 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1825 56bcf6fe4befb7f4a54b76994227637f 182 SUPERFAMILY SSF51905 77 156 1.77E-14 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1825 56bcf6fe4befb7f4a54b76994227637f 182 PANTHER PTHR13789 9 180 1.7E-38 T 19-04-2016 AMED_1825 56bcf6fe4befb7f4a54b76994227637f 182 PANTHER PTHR13789:SF174 9 180 1.7E-38 T 19-04-2016 AMED_1825 56bcf6fe4befb7f4a54b76994227637f 182 Gene3D G3DSA:3.50.50.60 81 154 2.5E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5377 07cf361d4070777da936392516e140ef 182 Pfam PF16859 Bacterial transcriptional repressor C-terminal 73 174 2.3E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5377 07cf361d4070777da936392516e140ef 182 SUPERFAMILY SSF46689 2 54 2.38E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5377 07cf361d4070777da936392516e140ef 182 PANTHER PTHR30055 2 172 6.5E-18 T 19-04-2016 AMED_5377 07cf361d4070777da936392516e140ef 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 2.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5377 07cf361d4070777da936392516e140ef 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 2.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5377 07cf361d4070777da936392516e140ef 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 51 2.2E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5377 07cf361d4070777da936392516e140ef 182 Gene3D G3DSA:1.10.10.60 2 50 3.1E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5377 07cf361d4070777da936392516e140ef 182 SUPERFAMILY SSF48498 68 174 4.15E-15 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5377 07cf361d4070777da936392516e140ef 182 Gene3D G3DSA:1.10.357.10 51 174 3.4E-16 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 Pfam PF02225 PA domain 116 203 1.2E-15 T 19-04-2016 IPR003137 PA domain AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 Pfam PF04389 Peptidase family M28 226 442 4.8E-43 T 19-04-2016 IPR007484 Peptidase M28 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 SUPERFAMILY SSF52025 105 196 9.29E-17 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 PANTHER PTHR12147 415 456 3.8E-122 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 PANTHER PTHR12147:SF19 37 397 3.8E-122 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 PANTHER PTHR12147:SF19 415 456 3.8E-122 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 Gene3D G3DSA:3.40.630.10 225 451 4.2E-68 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 Gene3D G3DSA:3.40.630.10 23 87 4.2E-68 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 SUPERFAMILY SSF53187 23 76 1.45E-62 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 SUPERFAMILY SSF53187 210 451 1.45E-62 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 PANTHER PTHR12147 37 397 3.8E-122 T 19-04-2016 AMED_0244 df0a1b4f720a9bc900efb8316e70f6fa 493 Gene3D G3DSA:3.50.30.30 95 215 1.3E-29 T 19-04-2016 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 SUPERFAMILY SSF88659 114 175 9.38E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 PANTHER PTHR30173:SF2 1 175 3.6E-71 T 19-04-2016 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 Pfam PF04542 Sigma-70 region 2 29 93 2.9E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 Gene3D G3DSA:1.10.1740.10 7 116 2.5E-23 T 19-04-2016 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 49 80 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 Pfam PF08281 Sigma-70, region 4 121 173 3.6E-16 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 SUPERFAMILY SSF88946 6 112 3.18E-21 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 Gene3D G3DSA:1.10.10.10 118 174 8.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 175 1.8E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2991 1729e255abc4b0a34309d62ca379d93e 183 PANTHER PTHR30173 1 175 3.6E-71 T 19-04-2016 AMED_1353 967d27a6d6c397d40f09c03179c7cb2e 215 Pfam PF01694 Rhomboid family 56 195 1.9E-25 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_1353 967d27a6d6c397d40f09c03179c7cb2e 215 SUPERFAMILY SSF144091 19 197 9.29E-28 T 19-04-2016 AMED_1353 967d27a6d6c397d40f09c03179c7cb2e 215 PANTHER PTHR22936:SF11 12 203 1.6E-30 T 19-04-2016 AMED_1353 967d27a6d6c397d40f09c03179c7cb2e 215 Gene3D G3DSA:1.20.1540.10 22 193 1.4E-20 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_1353 967d27a6d6c397d40f09c03179c7cb2e 215 PANTHER PTHR22936 12 203 1.6E-30 T 19-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 AMED_2071 fe122c9c391302e8ac72880333cf729f 244 PANTHER PTHR10245 7 243 1.0E-33 T 19-04-2016 AMED_2071 fe122c9c391302e8ac72880333cf729f 244 PANTHER PTHR10245:SF7 7 243 1.0E-33 T 19-04-2016 AMED_6666 f22510b6fe4aabd0a96b6d5b3925af36 255 PANTHER PTHR11941:SF86 4 251 3.0E-78 T 19-04-2016 AMED_6666 f22510b6fe4aabd0a96b6d5b3925af36 255 PANTHER PTHR11941 4 251 3.0E-78 T 19-04-2016 AMED_6666 f22510b6fe4aabd0a96b6d5b3925af36 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 251 4.6E-45 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_6666 f22510b6fe4aabd0a96b6d5b3925af36 255 Gene3D G3DSA:3.90.226.10 3 251 1.4E-67 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6666 f22510b6fe4aabd0a96b6d5b3925af36 255 SUPERFAMILY SSF52096 3 253 1.3E-68 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 SUPERFAMILY SSF56059 3 229 1.77E-66 T 19-04-2016 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 Pfam PF00549 CoA-ligase 256 378 4.1E-12 T 19-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 249 273 - T 19-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 Gene3D G3DSA:3.40.50.261 232 385 6.0E-52 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 PIRSF PIRSF001554 1 388 6.9E-137 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 SUPERFAMILY SSF52210 231 385 6.28E-41 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 PANTHER PTHR11815 2 389 2.2E-166 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 Gene3D G3DSA:3.30.470.20 88 230 3.0E-49 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 39.755 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 2 385 2.6E-122 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 Gene3D G3DSA:3.30.1490.20 22 87 7.7E-19 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_0802 669e684ec97c9f8884e7d6562df25c97 389 Pfam PF08442 ATP-grasp domain 2 194 8.1E-69 T 19-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMED_2463 04cc225edeb9dd8734a2ff762e933f10 478 Gene3D G3DSA:1.10.275.10 2 176 1.9E-39 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_2463 04cc225edeb9dd8734a2ff762e933f10 478 PANTHER PTHR10362:SF7 1 474 3.7E-85 T 19-04-2016 AMED_2463 04cc225edeb9dd8734a2ff762e933f10 478 SUPERFAMILY SSF48557 2 473 1.18E-117 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_2463 04cc225edeb9dd8734a2ff762e933f10 478 PANTHER PTHR10362 1 474 3.7E-85 T 19-04-2016 AMED_2463 04cc225edeb9dd8734a2ff762e933f10 478 Gene3D G3DSA:1.20.200.10 182 474 2.2E-75 T 19-04-2016 AMED_2463 04cc225edeb9dd8734a2ff762e933f10 478 Pfam PF00221 Aromatic amino acid lyase 9 434 1.4E-114 T 19-04-2016 IPR001106 Aromatic amino acid lyase AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 379 2.2E-17 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 SUPERFAMILY SSF47203 241 383 6.77E-19 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 PANTHER PTHR10909:SF305 134 382 6.0E-39 T 19-04-2016 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 SUPERFAMILY SSF56645 34 234 7.98E-30 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 PANTHER PTHR10909 134 382 6.0E-39 T 19-04-2016 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 Gene3D G3DSA:2.40.110.10 134 226 1.8E-24 T 19-04-2016 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 Gene3D G3DSA:1.20.140.10 227 382 2.2E-24 T 19-04-2016 AMED_3625 388e7ea380a17e7bd34f4bf3440dfe6d 399 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 225 3.5E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_5638 217f83e6a51d35c16d8d742eabf753f3 223 PANTHER PTHR19278 64 189 2.0E-14 T 19-04-2016 AMED_5638 217f83e6a51d35c16d8d742eabf753f3 223 Pfam PF00156 Phosphoribosyl transferase domain 62 154 3.6E-12 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_5638 217f83e6a51d35c16d8d742eabf753f3 223 Gene3D G3DSA:3.40.50.2020 42 195 7.1E-28 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_5638 217f83e6a51d35c16d8d742eabf753f3 223 SUPERFAMILY SSF53271 40 193 3.41E-26 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_3403 3a01990f394d89e210cb7326a7f50cb8 114 Gene3D G3DSA:3.10.180.10 6 111 3.6E-15 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3403 3a01990f394d89e210cb7326a7f50cb8 114 SUPERFAMILY SSF54593 5 112 9.02E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 5.2E-17 T 19-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 Gene3D G3DSA:1.20.1050.10 151 200 7.3E-6 T 19-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 Gene3D G3DSA:3.40.30.10 2 93 5.7E-21 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 PANTHER PTHR11260 1 201 1.1E-30 T 19-04-2016 AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 SUPERFAMILY SSF52833 2 88 4.84E-17 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 PANTHER PTHR11260:SF256 1 201 1.1E-30 T 19-04-2016 AMED_7275 e208dae2e00a654f7ed4e0ed3aec9639 215 SUPERFAMILY SSF47616 73 200 3.55E-11 T 19-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 SMART SM00421 281 338 1.5E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 Pfam PF00196 Bacterial regulatory proteins, luxR family 284 336 7.6E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 ProSitePatterns PS00622 LuxR-type HTH domain signature. 298 325 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 Gene3D G3DSA:1.10.10.10 283 338 2.2E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 SUPERFAMILY SSF46894 275 338 8.84E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 284 298 6.7E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 298 314 6.7E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5289 b15364fa9e8d8aabed65110786ecbbf2 340 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 314 326 6.7E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_6326 19a87aeaf2a023f51be20e1f9f7becf0 440 PANTHER PTHR23512 2 393 3.8E-39 T 19-04-2016 AMED_6326 19a87aeaf2a023f51be20e1f9f7becf0 440 Pfam PF07690 Major Facilitator Superfamily 21 296 1.2E-26 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6326 19a87aeaf2a023f51be20e1f9f7becf0 440 PANTHER PTHR23512:SF1 2 393 3.8E-39 T 19-04-2016 AMED_6326 19a87aeaf2a023f51be20e1f9f7becf0 440 SUPERFAMILY SSF103473 8 406 4.71E-53 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6326 19a87aeaf2a023f51be20e1f9f7becf0 440 Gene3D G3DSA:1.20.1250.20 11 195 3.7E-28 T 19-04-2016 AMED_6326 19a87aeaf2a023f51be20e1f9f7becf0 440 Gene3D G3DSA:1.20.1250.20 213 406 6.7E-12 T 19-04-2016 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 TIGRFAM TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase 3 412 7.9E-196 T 19-04-2016 IPR012773 Ectoine biosynthetic protein GO:0019491|GO:0030170|GO:0047307 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|UniPathway: UPA00067 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 PANTHER PTHR11986:SF61 1 412 1.1E-207 T 19-04-2016 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 2 416 6.1E-142 T 19-04-2016 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|UniPathway: UPA00067 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 Gene3D G3DSA:3.40.640.10 55 311 1.6E-61 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 SUPERFAMILY SSF53383 9 411 4.81E-104 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 Gene3D G3DSA:3.90.1150.10 13 54 1.9E-29 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 Gene3D G3DSA:3.90.1150.10 317 413 1.9E-29 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 PANTHER PTHR11986 1 412 1.1E-207 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 Pfam PF00202 Aminotransferase class-III 19 409 4.6E-73 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_8596 26e0575932e84674a8447f7bbdfc92f8 417 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 232 268 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_1396 59181f63633a3a731b80f07ed681751d 194 SUPERFAMILY SSF55729 1 150 1.98E-20 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1396 59181f63633a3a731b80f07ed681751d 194 PANTHER PTHR13256 38 173 1.7E-15 T 19-04-2016 AMED_1396 59181f63633a3a731b80f07ed681751d 194 Pfam PF13302 Acetyltransferase (GNAT) domain 25 126 1.3E-12 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1396 59181f63633a3a731b80f07ed681751d 194 Gene3D G3DSA:3.40.630.30 19 150 1.5E-20 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2304 50ac063ba51abf1c2c1f0e65b3d42c4b 371 PANTHER PTHR30589 3 299 1.9E-107 T 19-04-2016 AMED_2304 50ac063ba51abf1c2c1f0e65b3d42c4b 371 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 143 155 - T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMED_2304 50ac063ba51abf1c2c1f0e65b3d42c4b 371 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 6 272 1.6E-46 T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMED_2304 50ac063ba51abf1c2c1f0e65b3d42c4b 371 PANTHER PTHR30589:SF0 3 299 1.9E-107 T 19-04-2016 AMED_2304 50ac063ba51abf1c2c1f0e65b3d42c4b 371 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 16 274 2.8E-67 T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMED_2304 50ac063ba51abf1c2c1f0e65b3d42c4b 371 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 11 280 15.657 T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 PANTHER PTHR11731 226 288 2.2E-25 T 19-04-2016 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 Gene3D G3DSA:3.40.50.1820 13 162 2.4E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 Gene3D G3DSA:3.40.50.1820 231 335 2.4E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 PANTHER PTHR11731:SF151 1 179 2.2E-25 T 19-04-2016 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 PANTHER PTHR11731:SF151 226 288 2.2E-25 T 19-04-2016 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 SUPERFAMILY SSF53474 15 338 1.8E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 320 530 6.4E-38 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 28 534 6.5E-98 T 19-04-2016 IPR005674 CocE/Serine esterase GO:0016787 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 Gene3D G3DSA:2.60.120.260 336 535 4.5E-71 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 PANTHER PTHR11731 1 179 2.2E-25 T 19-04-2016 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 SMART SM00939 304 531 2.2E-67 T 19-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 32 289 1.7E-43 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMED_3394 28423ed1fcbee9cd38f8dd57830e772f 538 SUPERFAMILY SSF49785 332 535 5.53E-61 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 SMART SM00382 276 411 1.4E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 SUPERFAMILY SSF52540 79 223 7.53E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 PANTHER PTHR23077 150 519 3.0E-128 T 19-04-2016 AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 280 408 1.7E-24 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 Gene3D G3DSA:3.40.50.300 244 456 1.3E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 SUPERFAMILY SSF52540 243 480 9.53E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8498 711d4c0ae92fabe1c8a57d6e2f9a2e27 539 PANTHER PTHR23077:SF75 150 519 3.0E-128 T 19-04-2016 AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 Pfam PF00005 ABC transporter 21 163 8.3E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 Pfam PF08402 TOBE domain 276 345 1.4E-9 T 19-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 SUPERFAMILY SSF52540 6 245 2.99E-85 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 PANTHER PTHR24220 7 337 1.4E-126 T 19-04-2016 AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 Gene3D G3DSA:3.40.50.300 5 236 1.7E-79 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 PANTHER PTHR24220:SF151 7 337 1.4E-126 T 19-04-2016 AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 SUPERFAMILY SSF50331 240 346 1.7E-15 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 Gene3D G3DSA:2.40.50.140 279 337 2.1E-6 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8972 c94b1033bef63ca7cfff922d4c25c0e9 347 SMART SM00382 30 213 1.6E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 Gene3D G3DSA:1.20.1250.20 19 204 1.4E-25 T 19-04-2016 AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 ProSitePatterns PS00216 Sugar transport proteins signature 1. 75 91 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 PANTHER PTHR23501 1 479 3.4E-118 T 19-04-2016 AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 SUPERFAMILY SSF103473 12 202 6.93E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 SUPERFAMILY SSF103473 255 464 6.93E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 Gene3D G3DSA:1.20.1250.20 277 467 4.2E-16 T 19-04-2016 AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 Pfam PF07690 Major Facilitator Superfamily 26 417 4.7E-48 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7544 01f7fbd822f349e9720a5b091de125ed 485 PANTHER PTHR23501:SF76 1 479 3.4E-118 T 19-04-2016 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 PANTHER PTHR30173 8 312 1.8E-88 T 19-04-2016 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 Gene3D G3DSA:3.10.450.50 184 306 1.9E-12 T 19-04-2016 IPR032710 NTF2-like domain AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 PANTHER PTHR30173:SF11 8 312 1.8E-88 T 19-04-2016 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 173 1.3E-15 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 Gene3D G3DSA:1.10.10.10 115 174 8.3E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 Gene3D G3DSA:1.10.1740.10 8 81 3.3E-13 T 19-04-2016 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 Pfam PF12680 SnoaL-like domain 191 296 1.6E-7 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 Pfam PF04542 Sigma-70 region 2 16 80 7.1E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 SUPERFAMILY SSF88946 9 95 7.46E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 SUPERFAMILY SSF54427 184 306 1.06E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 SUPERFAMILY SSF88659 117 174 9.72E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6588 41057377e85cadb5e47cd5ba55408e0d 317 Pfam PF08281 Sigma-70, region 4 120 172 4.0E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 SMART SM00382 51 232 2.4E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 Pfam PF00005 ABC transporter 42 181 5.5E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 SUPERFAMILY SSF52540 24 247 4.79E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 PANTHER PTHR24220:SF454 24 246 1.1E-90 T 19-04-2016 AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 Gene3D G3DSA:3.40.50.300 22 229 1.2E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 PANTHER PTHR24220 24 246 1.1E-90 T 19-04-2016 AMED_5076 1a7f0b25cf40ee4ad58a7367a49dca29 275 Gene3D G3DSA:3.40.50.300 230 257 5.2E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4104 a2fbab2f7bf2d1746dca51c5fc383f09 254 Pfam PF08787 Alginate lyase 36 253 7.4E-59 T 19-04-2016 IPR014895 Alginate lyase 2 AMED_4104 a2fbab2f7bf2d1746dca51c5fc383f09 254 Gene3D G3DSA:2.60.120.200 27 254 8.8E-64 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4104 a2fbab2f7bf2d1746dca51c5fc383f09 254 SUPERFAMILY SSF49899 36 254 4.35E-58 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_0649 d51529671dcd1822ea26a8c43489b250 424 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 365 374 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 259 276 1.6E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 372 383 1.6E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 294 305 1.6E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00385 P450 superfamily signature 363 372 1.6E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PANTHER PTHR11712 14 407 1.8E-82 T 19-04-2016 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 Pfam PF00067 Cytochrome P450 294 393 1.2E-16 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 SUPERFAMILY SSF48264 14 423 2.75E-91 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 339 354 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 212 234 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 372 383 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 177 192 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 294 305 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 363 372 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 110 121 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 160 176 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 PRINTS PR00359 B-class P450 signature 311 338 1.5E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_0649 d51529671dcd1822ea26a8c43489b250 424 Gene3D G3DSA:1.10.630.10 8 423 9.0E-114 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5286 32647a1a9664730d6f827992f7e28e40 192 Gene3D G3DSA:3.40.50.300 13 116 8.8E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5286 32647a1a9664730d6f827992f7e28e40 192 SUPERFAMILY SSF52540 13 185 3.39E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8623 18e14354598f3f7523d54047697fdeff 268 Gene3D G3DSA:3.90.850.10 4 259 2.9E-85 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_8623 18e14354598f3f7523d54047697fdeff 268 SUPERFAMILY SSF56529 4 259 8.24E-77 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_8623 18e14354598f3f7523d54047697fdeff 268 PANTHER PTHR30143 6 265 1.3E-82 T 19-04-2016 AMED_8623 18e14354598f3f7523d54047697fdeff 268 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 83 257 1.8E-9 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 SUPERFAMILY SSF55653 58 148 3.27E-20 T 19-04-2016 IPR020069 Ribosomal protein L9, C-terminal AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 Gene3D G3DSA:3.10.430.100 62 150 8.1E-24 T 19-04-2016 IPR020069 Ribosomal protein L9, C-terminal AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 TIGRFAM TIGR00158 L9: ribosomal protein bL9 3 150 1.5E-32 T 19-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 SUPERFAMILY SSF55658 3 57 1.74E-16 T 19-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 Gene3D G3DSA:3.40.5.10 3 50 2.6E-21 T 19-04-2016 IPR020070 Ribosomal protein L9, N-terminal AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 ProSitePatterns PS00651 Ribosomal protein L9 signature. 14 41 - T 19-04-2016 IPR020070 Ribosomal protein L9, N-terminal AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 Pfam PF03948 Ribosomal protein L9, C-terminal domain 65 150 1.4E-22 T 19-04-2016 IPR020069 Ribosomal protein L9, C-terminal AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 PANTHER PTHR21368 3 150 2.9E-35 T 19-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 2 151 24.031 T 19-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9299 d02c0fcdf879d37f40200feeb4e65d23 154 Pfam PF01281 Ribosomal protein L9, N-terminal domain 3 47 6.9E-20 T 19-04-2016 IPR020070 Ribosomal protein L9, N-terminal AMED_5208 0760ff63227284ce4a0c77f67d106010 242 SUPERFAMILY SSF55781 31 180 1.57E-17 T 19-04-2016 IPR029016 GAF domain-like AMED_5208 0760ff63227284ce4a0c77f67d106010 242 PIRSF PIRSF036625 3 242 1.4E-52 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_5208 0760ff63227284ce4a0c77f67d106010 242 Pfam PF03861 ANTAR domain 182 234 1.0E-21 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5208 0760ff63227284ce4a0c77f67d106010 242 Gene3D G3DSA:1.10.10.10 184 238 8.3E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5208 0760ff63227284ce4a0c77f67d106010 242 SMART SM01012 180 235 5.1E-24 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5208 0760ff63227284ce4a0c77f67d106010 242 Pfam PF13185 GAF domain 30 163 1.1E-13 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5208 0760ff63227284ce4a0c77f67d106010 242 Gene3D G3DSA:3.30.450.40 22 183 3.4E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_5208 0760ff63227284ce4a0c77f67d106010 242 SMART SM00065 31 178 4.5E-5 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 64 87 3.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 57 3.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 Gene3D G3DSA:1.10.357.10 27 220 4.4E-37 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 PANTHER PTHR30055:SF18 27 256 3.6E-31 T 19-04-2016 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 SUPERFAMILY SSF46689 30 111 1.99E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 Pfam PF00440 Bacterial regulatory proteins, tetR family 45 89 1.6E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 PANTHER PTHR30055 27 256 3.6E-31 T 19-04-2016 AMED_1113 63cc7f95eb224de2fbb04f60347550f0 256 SUPERFAMILY SSF48498 113 222 2.22E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 SUPERFAMILY SSF53474 127 295 8.11E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 Gene3D G3DSA:3.40.50.1820 9 293 2.0E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 PANTHER PTHR11731:SF134 30 294 4.5E-89 T 19-04-2016 AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 SUPERFAMILY SSF53474 24 106 8.78E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 PANTHER PTHR11731 30 294 4.5E-89 T 19-04-2016 AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 45 252 3.2E-46 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_3738 026c9aa1f417ce4d959720b4db9ebd07 301 Pfam PF10503 Esterase PHB depolymerase 47 246 6.1E-25 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 SUPERFAMILY SSF52540 3 240 4.17E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 SMART SM00382 28 214 1.9E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 Pfam PF00005 ABC transporter 20 164 6.0E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 PANTHER PTHR24220 4 243 4.9E-139 T 19-04-2016 AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 Gene3D G3DSA:3.40.50.300 2 237 9.6E-77 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7959 1a82d530c6c00137ead8c1d5eed30ad0 361 PANTHER PTHR24220:SF350 4 243 4.9E-139 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 PANTHER PTHR31299:SF0 3 324 1.4E-28 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 Gene3D G3DSA:3.30.1870.10 40 105 8.3E-6 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 PANTHER PTHR31299 3 324 1.4E-28 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 Gene3D G3DSA:3.40.1660.10 243 324 1.1E-19 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 Gene3D G3DSA:3.40.1660.10 4 39 1.1E-19 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 SUPERFAMILY SSF159501 5 360 2.12E-56 T 19-04-2016 AMED_1756 7addc3ef0c1982f6ef9711202403422d 371 Pfam PF05139 Erythromycin esterase 38 327 1.3E-37 T 19-04-2016 IPR007815 Erythromycin esterase GO:0046677 AMED_3319 d0173069fca95f8760b94a543ff98192 315 PANTHER PTHR10314 3 308 1.4E-55 T 19-04-2016 AMED_3319 d0173069fca95f8760b94a543ff98192 315 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 302 1.6E-64 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_3319 d0173069fca95f8760b94a543ff98192 315 PANTHER PTHR10314:SF17 3 308 1.4E-55 T 19-04-2016 AMED_3319 d0173069fca95f8760b94a543ff98192 315 Gene3D G3DSA:3.40.50.1100 70 312 6.5E-55 T 19-04-2016 AMED_3319 d0173069fca95f8760b94a543ff98192 315 SUPERFAMILY SSF53686 8 310 1.57E-70 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 PANTHER PTHR10108 24 180 4.1E-14 T 19-04-2016 AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 PANTHER PTHR10108 202 238 4.1E-14 T 19-04-2016 AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 SUPERFAMILY SSF53335 35 253 1.45E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 PANTHER PTHR10108:SF779 24 180 4.1E-14 T 19-04-2016 AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 PANTHER PTHR10108:SF779 202 238 4.1E-14 T 19-04-2016 AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 Gene3D G3DSA:3.40.50.150 47 251 1.1E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1237 1812eee753bc8b21bbd893f047d4e872 293 Pfam PF08241 Methyltransferase domain 52 155 8.8E-13 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_8353 eed1e6bc616a0162906fac5fd567254c 256 Pfam PF01066 CDP-alcohol phosphatidyltransferase 60 124 9.0E-11 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_8353 eed1e6bc616a0162906fac5fd567254c 256 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 102 124 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 Gene3D G3DSA:1.10.3720.10 203 333 1.4E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 Gene3D G3DSA:1.10.3720.10 93 167 1.4E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 PANTHER PTHR30465:SF24 194 337 1.9E-91 T 19-04-2016 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 PANTHER PTHR30465:SF24 1 173 1.9E-91 T 19-04-2016 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 PANTHER PTHR30465 194 337 1.9E-91 T 19-04-2016 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 PANTHER PTHR30465 1 173 1.9E-91 T 19-04-2016 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 336 2.7E-39 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 SUPERFAMILY SSF161098 200 319 8.94E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8025 b883307a034795adecf9e98b1d2602bf 338 SUPERFAMILY SSF161098 94 164 8.94E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 Pfam PF02735 Ku70/Ku80 beta-barrel domain 11 189 5.5E-40 T 19-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 PANTHER PTHR41251 1 286 6.3E-85 T 19-04-2016 AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 1 254 32.848 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 TIGRFAM TIGR02772 Ku_bact: Ku protein 1 257 4.3E-90 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 Gene3D G3DSA:2.40.290.10 3 177 1.3E-14 T 19-04-2016 IPR016194 SPOC-like, C-terminal domain AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 PANTHER PTHR41251:SF1 1 286 6.3E-85 T 19-04-2016 AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 SMART SM00559 52 180 4.0E-32 T 19-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 PIRSF PIRSF006493 1 285 8.2E-92 T 19-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMED_5266 ffdd23f5d418010259d943a91fcd5d58 288 SUPERFAMILY SSF100939 1 259 6.67E-57 T 19-04-2016 IPR016194 SPOC-like, C-terminal domain AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SUPERFAMILY SSF52047 279 566 1.69E-30 T 19-04-2016 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 510 525 0.4 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 531 552 0.03 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 363 383 0.024 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Pfam PF13516 Leucine Rich repeat 477 497 0.015 T 19-04-2016 IPR001611 Leucine-rich repeat GO:0005515 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 PANTHER PTHR24106 362 552 4.9E-16 T 19-04-2016 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Gene3D G3DSA:3.80.10.10 113 157 4.2E-40 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 Gene3D G3DSA:3.80.10.10 278 566 4.2E-40 T 19-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 476 503 4.3 T 19-04-2016 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 504 526 78.0 T 19-04-2016 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 530 557 2.9 T 19-04-2016 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 428 452 140.0 T 19-04-2016 AMED_5837 61bb654e76b8e13ad0f7f33d12ce4ad9 684 SMART SM00368 361 388 0.094 T 19-04-2016 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Pfam PF01129 NAD:arginine ADP-ribosyltransferase 9 176 4.6E-7 T 19-04-2016 IPR000768 NAD:arginine ADP-ribosyltransferase, ART GO:0003956|GO:0006471 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Pfam PF15644 Papain fold toxin 1, glutamine deamidase 343 432 3.4E-6 T 19-04-2016 IPR028908 Tox-PL domain AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Pfam PF15644 Papain fold toxin 1, glutamine deamidase 823 925 2.8E-19 T 19-04-2016 IPR028908 Tox-PL domain AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 SMART SM00954 1140 1247 0.0052 T 19-04-2016 IPR007685 RelA/SpoT GO:0015969 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 SUPERFAMILY SSF56399 16 178 2.49E-14 T 19-04-2016 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 SUPERFAMILY SSF81301 1103 1244 4.09E-15 T 19-04-2016 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Gene3D G3DSA:3.90.176.10 25 177 3.8E-13 T 19-04-2016 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Gene3D G3DSA:3.90.176.10 528 686 6.3E-6 T 19-04-2016 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Pfam PF04607 Region found in RelA / SpoT proteins 1159 1242 2.8E-6 T 19-04-2016 IPR007685 RelA/SpoT GO:0015969 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 SUPERFAMILY SSF56399 527 687 3.12E-7 T 19-04-2016 AMED_9338 4648a63dabb57f7abd04cf0aef0d4d3d 1295 Gene3D G3DSA:3.30.460.10 1129 1226 6.1E-9 T 19-04-2016 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 SUPERFAMILY SSF51445 5 289 4.63E-85 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 SUPERFAMILY SSF52279 310 378 3.27E-51 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 SUPERFAMILY SSF52279 562 717 3.27E-51 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PANTHER PTHR30620 5 373 7.7E-242 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PANTHER PTHR30620 544 828 7.7E-242 T 19-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF14310 Fibronectin type III-like domain 748 809 2.4E-8 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 109 125 6.4E-32 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 210 228 6.4E-32 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 140 156 6.4E-32 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 34 50 6.4E-32 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PRINTS PR00133 Glycosyl hydrolase family 3 signature 63 82 6.4E-32 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PANTHER PTHR30620:SF18 5 373 7.7E-242 T 19-04-2016 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 PANTHER PTHR30620:SF18 544 828 7.7E-242 T 19-04-2016 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:3.20.20.300 5 287 7.4E-91 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 57 276 8.1E-48 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF07691 PA14 domain 450 525 1.4E-7 T 19-04-2016 IPR011658 PA14 domain AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 SMART SM01217 748 814 4.5E-7 T 19-04-2016 IPR026891 Fibronectin type III-like domain AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 311 714 9.6E-59 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 210 227 - T 19-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:3.40.50.1700 562 716 1.2E-69 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_8614 3d1ddf54a92118d73141df8f03bae821 829 Gene3D G3DSA:3.40.50.1700 299 378 1.2E-69 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_3240 632db64d67c25edb5636b69161145500 373 Gene3D G3DSA:1.10.600.10 58 372 4.4E-63 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_3240 632db64d67c25edb5636b69161145500 373 SUPERFAMILY SSF48576 76 373 1.09E-31 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_4682 aa3b45ee3b35301f37564b0ab3ba8b10 191 Pfam PF01872 RibD C-terminal domain 6 180 7.6E-14 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_4682 aa3b45ee3b35301f37564b0ab3ba8b10 191 Gene3D G3DSA:3.40.430.10 8 187 1.5E-15 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_4682 aa3b45ee3b35301f37564b0ab3ba8b10 191 PANTHER PTHR38011:SF2 3 190 7.0E-25 T 19-04-2016 AMED_4682 aa3b45ee3b35301f37564b0ab3ba8b10 191 SUPERFAMILY SSF53597 6 188 2.57E-20 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_4682 aa3b45ee3b35301f37564b0ab3ba8b10 191 PANTHER PTHR38011 3 190 7.0E-25 T 19-04-2016 AMED_3031 cb8f685bd749e3d7cf35202a40c9d267 146 Pfam PF12802 MarR family 32 89 5.6E-12 T 19-04-2016 AMED_3031 cb8f685bd749e3d7cf35202a40c9d267 146 SUPERFAMILY SSF46785 3 137 1.8E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3031 cb8f685bd749e3d7cf35202a40c9d267 146 Gene3D G3DSA:1.10.10.10 2 136 4.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3031 cb8f685bd749e3d7cf35202a40c9d267 146 PANTHER PTHR33164 1 138 1.7E-14 T 19-04-2016 AMED_3031 cb8f685bd749e3d7cf35202a40c9d267 146 SMART SM00347 25 125 1.4E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3669 c985032e720bbf073a19927f03459374 135 SUPERFAMILY SSF53474 3 121 1.85E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3669 c985032e720bbf073a19927f03459374 135 PANTHER PTHR10992 4 131 1.1E-12 T 19-04-2016 AMED_3669 c985032e720bbf073a19927f03459374 135 Gene3D G3DSA:3.40.50.1820 4 129 1.7E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3669 c985032e720bbf073a19927f03459374 135 Pfam PF00561 alpha/beta hydrolase fold 4 112 5.4E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 SMART SM00382 36 180 5.0E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 PANTHER PTHR11669 392 432 3.8E-148 T 19-04-2016 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 Gene3D G3DSA:3.40.50.300 14 167 2.5E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 Gene3D G3DSA:1.10.8.60 168 244 1.5E-17 T 19-04-2016 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 4 361 4.3E-113 T 19-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 SUPERFAMILY SSF48019 246 362 2.47E-22 T 19-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 237 363 3.2E-17 T 19-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 SUPERFAMILY SSF52540 32 221 8.93E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 Pfam PF13177 DNA polymerase III, delta subunit 19 177 1.3E-39 T 19-04-2016 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 PANTHER PTHR11669:SF0 392 432 3.8E-148 T 19-04-2016 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 PANTHER PTHR11669:SF0 3 376 3.8E-148 T 19-04-2016 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 Gene3D G3DSA:1.20.272.10 245 363 1.4E-16 T 19-04-2016 AMED_8918 f858702842f1dd4994404bb1cedf5d01 730 PANTHER PTHR11669 3 376 3.8E-148 T 19-04-2016 AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 Gene3D G3DSA:3.60.21.10 321 509 2.2E-48 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 Gene3D G3DSA:3.60.21.10 93 179 2.2E-48 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 Gene3D G3DSA:3.60.21.10 239 254 2.2E-48 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 SUPERFAMILY SSF56300 239 266 1.46E-29 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 SUPERFAMILY SSF56300 94 179 1.46E-29 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 SUPERFAMILY SSF56300 337 509 1.46E-29 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8410 5647f093832bf004bf17b6ddf5f47918 575 TIGRFAM TIGR03767 P_acnes_RR: metallophosphoesterase, PPA1498 family 58 573 9.7E-207 T 19-04-2016 IPR022506 Metallophosphoesterase, PPA1498 AMED_3923 2a7959f95e29f3d182ac855e8815efb3 274 PANTHER PTHR30304 2 268 1.1E-64 T 19-04-2016 AMED_3923 2a7959f95e29f3d182ac855e8815efb3 274 Gene3D G3DSA:3.20.20.70 3 272 4.5E-81 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3923 2a7959f95e29f3d182ac855e8815efb3 274 SUPERFAMILY SSF51569 2 271 7.91E-75 T 19-04-2016 AMED_3923 2a7959f95e29f3d182ac855e8815efb3 274 PIRSF PIRSF001359 1 273 5.2E-69 T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_3923 2a7959f95e29f3d182ac855e8815efb3 274 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 272 2.4E-76 T 19-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 SUPERFAMILY SSF53955 48 270 2.0E-64 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 SUPERFAMILY SSF56601 287 503 6.57E-59 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 SUPERFAMILY SSF56601 536 714 6.57E-59 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 SUPERFAMILY SSF56601 228 250 6.57E-59 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 Pfam PF00912 Transglycosylase 60 246 1.0E-57 T 19-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 Pfam PF00905 Penicillin binding protein transpeptidase domain 356 418 3.4E-5 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 Pfam PF00905 Penicillin binding protein transpeptidase domain 456 637 7.1E-12 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 Gene3D G3DSA:3.40.710.10 536 713 3.6E-68 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 Gene3D G3DSA:3.40.710.10 288 503 3.6E-68 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 PANTHER PTHR32282:SF0 683 717 6.4E-116 T 19-04-2016 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 PANTHER PTHR32282 683 717 6.4E-116 T 19-04-2016 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 Gene3D G3DSA:1.10.3810.10 61 261 1.7E-64 T 19-04-2016 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 PANTHER PTHR32282 10 662 6.4E-116 T 19-04-2016 AMED_8853 45a9b1ac4ea85beacede1c0e81153342 722 PANTHER PTHR32282:SF0 10 662 6.4E-116 T 19-04-2016 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 PANTHER PTHR11880 1 92 1.7E-54 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 Pfam PF00203 Ribosomal protein S19 3 83 9.4E-37 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 PIRSF PIRSF002144 1 93 3.4E-30 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.024 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 19-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 8.6E-24 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 8.6E-24 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 8.6E-24 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 Gene3D G3DSA:3.30.860.10 1 92 2.1E-41 T 19-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 1.5E-47 T 19-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMED_0681 a7ff01950cb4f7218f12e6fde7d71e19 93 SUPERFAMILY SSF54570 3 83 7.46E-35 T 19-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 Gene3D G3DSA:1.20.1250.20 7 193 4.8E-32 T 19-04-2016 AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 PANTHER PTHR23501:SF37 5 481 8.8E-146 T 19-04-2016 AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 SUPERFAMILY SSF103473 4 196 3.53E-65 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 SUPERFAMILY SSF103473 245 413 3.53E-65 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 SUPERFAMILY SSF103473 443 470 3.53E-65 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 Pfam PF07690 Major Facilitator Superfamily 20 404 3.4E-45 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 PANTHER PTHR23501 5 481 8.8E-146 T 19-04-2016 AMED_2139 2abf42cf8bb605d6e75f00f3af657dc4 481 Gene3D G3DSA:1.20.1250.20 254 465 2.7E-14 T 19-04-2016 AMED_7363 c936fc040ee232e28bf260da3cf50d49 372 SUPERFAMILY SSF161098 95 353 2.62E-36 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7363 c936fc040ee232e28bf260da3cf50d49 372 PANTHER PTHR30425:SF0 84 367 1.3E-77 T 19-04-2016 AMED_7363 c936fc040ee232e28bf260da3cf50d49 372 Gene3D G3DSA:1.10.3720.10 86 363 4.5E-39 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7363 c936fc040ee232e28bf260da3cf50d49 372 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 86 359 3.1E-69 T 19-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMED_7363 c936fc040ee232e28bf260da3cf50d49 372 PANTHER PTHR30425 84 367 1.3E-77 T 19-04-2016 AMED_7363 c936fc040ee232e28bf260da3cf50d49 372 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 159 358 2.3E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 PANTHER PTHR30173 3 348 2.5E-140 T 19-04-2016 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 Gene3D G3DSA:1.10.10.10 93 149 1.4E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2667 7b8599e47415034c9747fdc19c67e606 380 SUPERFAMILY SSF88946 3 82 7.46E-12 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 Pfam PF08281 Sigma-70, region 4 99 149 1.2E-7 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 SUPERFAMILY SSF88659 92 150 1.96E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 Pfam PF04542 Sigma-70 region 2 5 69 1.2E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 Gene3D G3DSA:1.10.1740.10 3 86 6.0E-12 T 19-04-2016 AMED_2667 7b8599e47415034c9747fdc19c67e606 380 PANTHER PTHR30173:SF15 3 348 2.5E-140 T 19-04-2016 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 Pfam PF01252 Signal peptidase (SPase) II 86 227 1.5E-29 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 ProSitePatterns PS00855 Signal peptidases II signature. 169 181 - T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 166 181 1.7E-15 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 124 132 1.7E-15 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 209 225 1.7E-15 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 PANTHER PTHR33695:SF1 56 242 1.3E-46 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 PANTHER PTHR33695 56 242 1.3E-46 T 19-04-2016 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 TIGRFAM TIGR00077 lspA: signal peptidase II 78 230 2.7E-29 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_2970 018fd7ef17a1b4d083612edd35e64a1f 260 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 77 234 14.963 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMED_5763 72d734fb9a4a705980464814bf758552 148 PANTHER PTHR35010:SF2 3 125 1.1E-36 T 19-04-2016 AMED_5763 72d734fb9a4a705980464814bf758552 148 Gene3D G3DSA:1.10.260.40 5 85 8.5E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5763 72d734fb9a4a705980464814bf758552 148 SUPERFAMILY SSF47413 35 84 8.73E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5763 72d734fb9a4a705980464814bf758552 148 PANTHER PTHR35010 3 125 1.1E-36 T 19-04-2016 AMED_5763 72d734fb9a4a705980464814bf758552 148 SMART SM00530 13 86 2.0E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5763 72d734fb9a4a705980464814bf758552 148 Pfam PF13560 Helix-turn-helix domain 9 89 4.7E-21 T 19-04-2016 AMED_3999 6eead6af474606c67d69dd0830a83451 562 SUPERFAMILY SSF55781 9 189 2.84E-28 T 19-04-2016 IPR029016 GAF domain-like AMED_3999 6eead6af474606c67d69dd0830a83451 562 Gene3D G3DSA:3.30.450.40 8 185 3.2E-31 T 19-04-2016 IPR029016 GAF domain-like AMED_3999 6eead6af474606c67d69dd0830a83451 562 Pfam PF13185 GAF domain 28 169 1.3E-14 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_3999 6eead6af474606c67d69dd0830a83451 562 SMART SM00065 28 178 3.4E-24 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_3999 6eead6af474606c67d69dd0830a83451 562 Pfam PF13556 PucR C-terminal helix-turn-helix domain 497 553 4.0E-13 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_3999 6eead6af474606c67d69dd0830a83451 562 PANTHER PTHR33744 287 562 1.7E-17 T 19-04-2016 AMED_3999 6eead6af474606c67d69dd0830a83451 562 PANTHER PTHR33744:SF4 287 562 1.7E-17 T 19-04-2016 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 PANTHER PTHR11904:SF9 4 258 4.7E-96 T 19-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 PIRSF PIRSF000477 1 259 7.9E-93 T 19-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 74 115 - T 19-04-2016 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 TIGRFAM TIGR01698 PUNP: purine nucleotide phosphorylase 20 256 2.6E-100 T 19-04-2016 IPR011269 Putative purine nucleotide phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 Gene3D G3DSA:3.40.50.1580 4 257 2.9E-95 T 19-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 PANTHER PTHR11904 4 258 4.7E-96 T 19-04-2016 IPR001369 PNP/MTAP phosphorylase AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 20 256 3.8E-81 T 19-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 Pfam PF01048 Phosphorylase superfamily 20 256 3.7E-44 T 19-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMED_0908 a32b7b9e733a5f9d8b9b486300f87e85 259 SUPERFAMILY SSF53167 4 256 2.23E-83 T 19-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMED_8389 3778556866bb7a1d208c2cc4dae5e4ee 193 Gene3D G3DSA:1.10.10.10 6 80 7.3E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8389 3778556866bb7a1d208c2cc4dae5e4ee 193 Pfam PF12840 Helix-turn-helix domain 20 71 2.3E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8389 3778556866bb7a1d208c2cc4dae5e4ee 193 SUPERFAMILY SSF46785 14 106 1.07E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8389 3778556866bb7a1d208c2cc4dae5e4ee 193 SMART SM00418 17 104 6.4E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0811 15f4b0ef59e8aa706a9455f538c62580 151 SUPERFAMILY SSF109604 3 99 3.05E-9 T 19-04-2016 AMED_0811 15f4b0ef59e8aa706a9455f538c62580 151 Gene3D G3DSA:1.10.3210.10 28 109 1.9E-7 T 19-04-2016 IPR006674 HD domain AMED_0811 15f4b0ef59e8aa706a9455f538c62580 151 Pfam PF01966 HD domain 23 98 4.3E-5 T 19-04-2016 IPR006674 HD domain AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 SUPERFAMILY SSF46785 7 86 2.55E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 6.2E-10 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 14 29 6.2E-10 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 6.2E-10 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 Gene3D G3DSA:1.10.10.10 3 83 6.3E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 Pfam PF01022 Bacterial regulatory protein, arsR family 19 65 3.1E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 SMART SM00418 12 91 1.1E-20 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_0757 ce51964afc2efff2a9c552e24a99e117 110 PANTHER PTHR33154 1 103 2.4E-20 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 PANTHER PTHR24220:SF350 13 289 5.4E-144 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 PANTHER PTHR24220:SF350 366 386 5.4E-144 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 PANTHER PTHR24220 366 386 5.4E-144 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 SUPERFAMILY SSF52540 12 251 4.34E-74 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 SUPERFAMILY SSF54631 261 377 6.39E-9 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 SMART SM00382 38 225 5.1E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 Gene3D G3DSA:3.40.50.300 5 249 9.4E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 PANTHER PTHR24220 13 289 5.4E-144 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 Gene3D G3DSA:3.10.580.10 254 381 2.2E-9 T 19-04-2016 AMED_0097 c1155795fd3f9c7284345aad26f3ea33 388 Pfam PF00005 ABC transporter 30 175 2.7E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1131 f4f5122305f22b0559c4d31fa3cba0c1 269 SUPERFAMILY SSF69618 6 266 1.96E-51 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_1131 f4f5122305f22b0559c4d31fa3cba0c1 269 Gene3D G3DSA:3.40.50.10090 134 265 1.2E-32 T 19-04-2016 AMED_1131 f4f5122305f22b0559c4d31fa3cba0c1 269 Gene3D G3DSA:3.40.50.10090 3 132 2.2E-25 T 19-04-2016 AMED_1131 f4f5122305f22b0559c4d31fa3cba0c1 269 PANTHER PTHR40082 1 262 2.5E-27 T 19-04-2016 AMED_1131 f4f5122305f22b0559c4d31fa3cba0c1 269 Pfam PF02602 Uroporphyrinogen-III synthase HemD 19 259 6.0E-37 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 Pfam PF12833 Helix-turn-helix domain 230 308 1.9E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 SUPERFAMILY SSF46689 208 258 1.16E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 Pfam PF01965 DJ-1/PfpI family 52 169 2.7E-16 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 SUPERFAMILY SSF46689 261 310 1.5E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 303 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 PANTHER PTHR11019:SF68 11 311 6.5E-109 T 19-04-2016 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 SMART SM00342 224 307 8.9E-29 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 Gene3D G3DSA:1.10.10.60 264 311 3.8E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 Gene3D G3DSA:3.40.50.880 11 213 5.0E-48 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 SUPERFAMILY SSF52317 8 190 1.14E-45 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 PANTHER PTHR11019 11 311 6.5E-109 T 19-04-2016 AMED_7695 8148fb45c4a771275d9e81baa9fbc9f1 312 Gene3D G3DSA:1.10.10.60 214 263 2.4E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9124 e70b03773fbc64c5a8a715e51e205f33 85 PANTHER PTHR35377 1 85 6.8E-15 T 19-04-2016 AMED_9124 e70b03773fbc64c5a8a715e51e205f33 85 PANTHER PTHR35377:SF3 1 85 6.8E-15 T 19-04-2016 AMED_9124 e70b03773fbc64c5a8a715e51e205f33 85 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 2 37 6.4E-8 T 19-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMED_4677 e30f96b2e6ad6305db21145afeffcfdf 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 115 8.6E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_4677 e30f96b2e6ad6305db21145afeffcfdf 128 Gene3D G3DSA:3.10.180.10 8 120 9.4E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4677 e30f96b2e6ad6305db21145afeffcfdf 128 SUPERFAMILY SSF54593 1 123 6.58E-26 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4677 e30f96b2e6ad6305db21145afeffcfdf 128 PANTHER PTHR36437 1 122 1.5E-20 T 19-04-2016 AMED_1065 dc934b05695098b3394033541ea9eafa 360 PANTHER PTHR30298 1 360 2.0E-30 T 19-04-2016 AMED_1065 dc934b05695098b3394033541ea9eafa 360 Pfam PF01609 Transposase DDE domain 97 326 1.5E-15 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_1065 dc934b05695098b3394033541ea9eafa 360 Pfam PF13808 DDE_Tnp_1-associated 1 80 5.4E-14 T 19-04-2016 IPR032806 H repeat-associated protein, N-terminal AMED_0226 547307441645398f18878995dfb69b10 316 PANTHER PTHR11048:SF5 31 316 1.4E-62 T 19-04-2016 AMED_0226 547307441645398f18878995dfb69b10 316 Pfam PF01040 UbiA prenyltransferase family 66 280 3.7E-17 T 19-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 AMED_0226 547307441645398f18878995dfb69b10 316 PANTHER PTHR11048 31 316 1.4E-62 T 19-04-2016 AMED_3709 080dc58743efbb2ca09f6d9797d1c015 316 Pfam PF07859 alpha/beta hydrolase fold 86 292 8.9E-59 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_3709 080dc58743efbb2ca09f6d9797d1c015 316 SUPERFAMILY SSF53474 43 314 5.22E-64 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3709 080dc58743efbb2ca09f6d9797d1c015 316 Gene3D G3DSA:3.40.50.1820 5 314 2.3E-78 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3709 080dc58743efbb2ca09f6d9797d1c015 316 PANTHER PTHR23024 65 316 9.1E-62 T 19-04-2016 AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 Pfam PF02515 CoA-transferase family III 6 350 9.9E-78 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 PANTHER PTHR24023:SF591 27 366 1.2E-110 T 19-04-2016 AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 Gene3D G3DSA:3.40.50.10540 3 208 2.8E-98 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 Gene3D G3DSA:3.40.50.10540 294 377 2.8E-98 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 SUPERFAMILY SSF89796 4 377 3.01E-114 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 PANTHER PTHR24023 27 366 1.2E-110 T 19-04-2016 AMED_2479 f8ec061e8cdc50a002ed2205a7a6d25a 378 Gene3D G3DSA:3.30.1540.10 223 293 9.1E-6 T 19-04-2016 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 PRINTS PR00419 Adrenodoxin reductase family signature 10 32 7.5E-6 T 19-04-2016 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 PRINTS PR00419 Adrenodoxin reductase family signature 33 46 7.5E-6 T 19-04-2016 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 SUPERFAMILY SSF51905 10 319 7.2E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 SUPERFAMILY SSF51905 448 486 7.2E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 PANTHER PTHR10668:SF75 11 486 3.5E-118 T 19-04-2016 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 11 489 1.2E-149 T 19-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 Gene3D G3DSA:3.50.50.60 129 130 4.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 Gene3D G3DSA:3.50.50.60 218 301 4.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 Gene3D G3DSA:3.50.50.60 425 489 4.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 Gene3D G3DSA:3.50.50.60 10 64 4.7E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 PANTHER PTHR10668 11 486 3.5E-118 T 19-04-2016 AMED_4075 5734ee0891778fd1650d589ccf07887b 491 Pfam PF01593 Flavin containing amine oxidoreductase 18 486 1.6E-42 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 Pfam PF00652 Ricin-type beta-trefoil lectin domain 41 163 2.3E-31 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF49265 171 270 4.43E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SMART SM00060 174 248 8.7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SMART SM00060 269 349 1.0E-4 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF49265 262 360 9.9E-11 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.80.10.50 35 164 9.6E-42 T 19-04-2016 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.60.40.10 172 258 3.5E-13 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.60.40.10 267 359 2.1E-16 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 PANTHER PTHR19328 370 605 1.4E-61 T 19-04-2016 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF50370 41 164 7.64E-42 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 Gene3D G3DSA:2.120.10.30 369 691 1.3E-83 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 Pfam PF07995 Glucose / Sorbosone dehydrogenase 378 673 2.2E-66 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SMART SM00458 37 166 1.5E-33 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_7822 6ca5de4e785daedbd1fd409333f8bf58 694 SUPERFAMILY SSF50952 370 674 1.14E-36 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_5397 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 89 106 1.5E-14 T 19-04-2016 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 AMED_5397 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 35 54 1.5E-14 T 19-04-2016 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 AMED_5397 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 114 130 1.5E-14 T 19-04-2016 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 AMED_5397 41778deaa91f453560327d487813870d 149 PRINTS PR01885 Macromomycin family signature 58 73 1.5E-14 T 19-04-2016 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 AMED_5397 41778deaa91f453560327d487813870d 149 ProDom PD012709 ANTIBIOTIC DNA-BINDING DIRECT ANTIMICROBIAL SEQUENCING 3D-STRUCTURE PRECURSOR SIGNAL APOPROTEIN NEOCARZINOSTATIN 48 147 6.0E-7 T 19-04-2016 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 AMED_5397 41778deaa91f453560327d487813870d 149 SUPERFAMILY SSF49319 35 149 7.33E-22 T 19-04-2016 IPR027273 Neocarzinostatin-like AMED_5397 41778deaa91f453560327d487813870d 149 Gene3D G3DSA:2.60.40.230 34 149 1.9E-33 T 19-04-2016 IPR027273 Neocarzinostatin-like AMED_5397 41778deaa91f453560327d487813870d 149 Pfam PF00960 Neocarzinostatin family 38 148 4.4E-41 T 19-04-2016 IPR002186 Neocarzinostatin family GO:0003677|GO:0006952 AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 PANTHER PTHR24220:SF308 15 390 1.6E-107 T 19-04-2016 AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 Pfam PF00005 ABC transporter 282 436 2.3E-20 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 Pfam PF00005 ABC transporter 29 178 1.3E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 PANTHER PTHR24220 15 390 1.6E-107 T 19-04-2016 AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 Gene3D G3DSA:3.40.50.300 13 239 1.1E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 SUPERFAMILY SSF52540 13 236 3.59E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 Gene3D G3DSA:3.40.50.300 281 488 1.1E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 SUPERFAMILY SSF52540 281 487 9.75E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 SMART SM00382 290 483 1.3 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1837 838da90e5bc4d5135b10be02c68ff7ff 507 SMART SM00382 38 234 5.3E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0187 91431605b4816febbd07d49e122d7207 342 Pfam PF13845 Septum formation 68 284 2.0E-73 T 19-04-2016 IPR026004 Septum formation-related domain AMED_1822 3516fea85658a0e2f5e895451268ab71 130 PANTHER PTHR32282 26 119 4.1E-13 T 19-04-2016 AMED_1822 3516fea85658a0e2f5e895451268ab71 130 Gene3D G3DSA:3.40.710.10 42 125 1.0E-17 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_1822 3516fea85658a0e2f5e895451268ab71 130 PANTHER PTHR32282:SF8 26 119 4.1E-13 T 19-04-2016 AMED_1822 3516fea85658a0e2f5e895451268ab71 130 SUPERFAMILY SSF56601 2 123 7.7E-19 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3273 32e568ea09e7cee82458d8bd35ae4af0 533 SUPERFAMILY SSF50939 72 437 3.73E-21 T 19-04-2016 IPR011040 Sialidases AMED_3273 32e568ea09e7cee82458d8bd35ae4af0 533 Gene3D G3DSA:2.120.10.10 75 438 9.0E-27 T 19-04-2016 IPR011040 Sialidases AMED_1691 a7adf0524fd7eb9e3204febc42703e03 274 Pfam PF00296 Luciferase-like monooxygenase 12 93 1.3E-14 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1691 a7adf0524fd7eb9e3204febc42703e03 274 Pfam PF00296 Luciferase-like monooxygenase 117 253 7.8E-5 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1691 a7adf0524fd7eb9e3204febc42703e03 274 Gene3D G3DSA:3.20.20.30 1 271 2.5E-25 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1691 a7adf0524fd7eb9e3204febc42703e03 274 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 3 265 3.9E-84 T 19-04-2016 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted AMED_1691 a7adf0524fd7eb9e3204febc42703e03 274 SUPERFAMILY SSF51679 1 271 1.77E-35 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4698 32d556a4d4bf83a3ed318467fecc5745 150 Pfam PF08592 Domain of unknown function (DUF1772) 18 144 3.3E-16 T 19-04-2016 IPR013901 Protein of unknown function DUF1772 AMED_5043 45e93a75adc264700019e5ae2b43819b 423 SUPERFAMILY SSF53850 17 423 8.01E-58 T 19-04-2016 AMED_5043 45e93a75adc264700019e5ae2b43819b 423 Gene3D G3DSA:3.40.190.10 316 353 9.9E-15 T 19-04-2016 AMED_5043 45e93a75adc264700019e5ae2b43819b 423 Gene3D G3DSA:3.40.190.10 1 132 9.9E-15 T 19-04-2016 AMED_5043 45e93a75adc264700019e5ae2b43819b 423 PANTHER PTHR30061 4 411 1.6E-46 T 19-04-2016 AMED_5043 45e93a75adc264700019e5ae2b43819b 423 Gene3D G3DSA:3.40.190.10 141 315 7.3E-36 T 19-04-2016 AMED_5043 45e93a75adc264700019e5ae2b43819b 423 Pfam PF13416 Bacterial extracellular solute-binding protein 50 353 4.1E-26 T 19-04-2016 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 PANTHER PTHR10366 230 383 4.9E-148 T 19-04-2016 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 PANTHER PTHR10366 2 213 4.9E-148 T 19-04-2016 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 SUPERFAMILY SSF51735 1 364 4.69E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 PANTHER PTHR10366:SF337 230 383 4.9E-148 T 19-04-2016 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 PANTHER PTHR10366:SF337 2 213 4.9E-148 T 19-04-2016 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 291 2.1E-25 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 Gene3D G3DSA:3.90.25.10 214 370 4.6E-28 T 19-04-2016 AMED_4980 a9b8e3a11644d0d2db84b3d904eb28a4 384 Gene3D G3DSA:3.40.50.720 1 213 3.8E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6960 2172ddf858e35d1b52245f8eabaa7868 309 Gene3D G3DSA:3.60.15.10 31 298 1.7E-27 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6960 2172ddf858e35d1b52245f8eabaa7868 309 Pfam PF13483 Beta-lactamase superfamily domain 37 243 4.2E-12 T 19-04-2016 AMED_6960 2172ddf858e35d1b52245f8eabaa7868 309 SMART SM00849 41 264 1.9E-10 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6960 2172ddf858e35d1b52245f8eabaa7868 309 PANTHER PTHR15032 32 168 9.6E-14 T 19-04-2016 AMED_6960 2172ddf858e35d1b52245f8eabaa7868 309 SUPERFAMILY SSF56281 201 274 6.29E-23 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6960 2172ddf858e35d1b52245f8eabaa7868 309 SUPERFAMILY SSF56281 32 171 6.29E-23 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 PANTHER PTHR11895:SF55 4 423 2.6E-107 T 19-04-2016 AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 Pfam PF01425 Amidase 321 405 3.5E-7 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 Pfam PF01425 Amidase 23 296 4.7E-73 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 Gene3D G3DSA:3.90.1300.10 305 422 3.1E-16 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 Gene3D G3DSA:3.90.1300.10 6 287 1.3E-87 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 SUPERFAMILY SSF75304 5 412 9.03E-103 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_5833 eff9badbb239ec840c0ea7658635ba75 432 PANTHER PTHR11895 4 423 2.6E-107 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0851 95201c38ff8d0835bc12c5d04af39969 137 SUPERFAMILY SSF81343 9 132 1.9E-32 T 19-04-2016 AMED_0851 95201c38ff8d0835bc12c5d04af39969 137 Gene3D G3DSA:1.20.950.10 6 134 2.1E-40 T 19-04-2016 AMED_0851 95201c38ff8d0835bc12c5d04af39969 137 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 13 117 1.0E-14 T 19-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 AMED_1128 10ce40926e21b1570b35eef719f82914 367 Pfam PF06224 Winged helix DNA-binding domain 38 354 5.0E-33 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_1128 10ce40926e21b1570b35eef719f82914 367 PANTHER PTHR38479:SF2 1 354 5.3E-14 T 19-04-2016 AMED_1128 10ce40926e21b1570b35eef719f82914 367 PANTHER PTHR38479 1 354 5.3E-14 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 PANTHER PTHR30478 2 377 4.1E-118 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 SUPERFAMILY SSF55979 250 375 1.23E-31 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 250 359 1.8E-32 T 19-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0002 014b741a9312e34d350e747f968ead7a 377 Gene3D G3DSA:3.10.150.10 1 122 1.2E-28 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 Gene3D G3DSA:3.10.150.10 129 252 6.9E-29 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 375 1.3E-96 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0002 014b741a9312e34d350e747f968ead7a 377 PIRSF PIRSF000804 1 376 1.5E-98 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0002 014b741a9312e34d350e747f968ead7a 377 SUPERFAMILY SSF55979 133 249 2.22E-20 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 122 3.1E-32 T 19-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0002 014b741a9312e34d350e747f968ead7a 377 SMART SM00480 17 371 1.2E-117 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0002 014b741a9312e34d350e747f968ead7a 377 Gene3D G3DSA:3.10.150.10 254 376 1.4E-42 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 SUPERFAMILY SSF55979 1 122 1.04E-21 T 19-04-2016 AMED_0002 014b741a9312e34d350e747f968ead7a 377 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 247 5.5E-30 T 19-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_2287 30140b59e8f2d3792837047d4258d74b 277 Gene3D G3DSA:1.10.260.40 11 67 4.6E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2287 30140b59e8f2d3792837047d4258d74b 277 SMART SM00530 16 71 2.1E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2287 30140b59e8f2d3792837047d4258d74b 277 Pfam PF01381 Helix-turn-helix 17 66 3.8E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2287 30140b59e8f2d3792837047d4258d74b 277 SUPERFAMILY SSF47413 12 67 6.44E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2287 30140b59e8f2d3792837047d4258d74b 277 PANTHER PTHR10245:SF20 11 274 5.5E-29 T 19-04-2016 AMED_2287 30140b59e8f2d3792837047d4258d74b 277 PANTHER PTHR10245 11 274 5.5E-29 T 19-04-2016 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 Pfam PF00834 Ribulose-phosphate 3 epimerase family 2 201 2.9E-74 T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 Gene3D G3DSA:3.20.20.70 2 218 2.9E-84 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 134 156 - T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 1 214 2.5E-78 T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 32 46 - T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 PIRSF PIRSF001461 1 222 3.6E-87 T 19-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 SUPERFAMILY SSF51366 1 216 1.41E-63 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_2771 eb32b5d34042db1cf0bf1643428fd32d 223 PANTHER PTHR11749 1 222 1.8E-103 T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 Gene3D G3DSA:3.30.1540.10 235 319 3.9E-24 T 19-04-2016 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 TIGRFAM TIGR03253 oxalate_frc: formyl-CoA transferase 3 409 4.1E-196 T 19-04-2016 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0008152|GO:0033608 MetaCyc: PWY-6695|UniPathway: UPA00540 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 PANTHER PTHR24023:SF593 238 396 2.3E-30 T 19-04-2016 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 PANTHER PTHR24023:SF593 59 212 2.3E-30 T 19-04-2016 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 Gene3D G3DSA:3.40.50.10540 320 409 2.9E-106 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 Gene3D G3DSA:3.40.50.10540 3 215 2.9E-106 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 Hamap MF_00742 Formyl-CoA:oxalate CoA-transferase [frc]. 1 409 62.97 T 19-04-2016 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0008152|GO:0033608 MetaCyc: PWY-6695|UniPathway: UPA00540 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 SUPERFAMILY SSF89796 3 409 2.09E-121 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 Pfam PF02515 CoA-transferase family III 5 386 8.6E-103 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 PANTHER PTHR24023 238 396 2.3E-30 T 19-04-2016 AMED_4572 7b4e9b193ae50f4c73d894874a917ee4 409 PANTHER PTHR24023 59 212 2.3E-30 T 19-04-2016 AMED_4831 a9704599ce74fae65c4a526e50ec1c79 179 Pfam PF09684 Phage tail protein (Tail_P2_I) 35 165 2.9E-13 T 19-04-2016 IPR006521 Tail protein I AMED_4831 a9704599ce74fae65c4a526e50ec1c79 179 TIGRFAM TIGR02242 tail_TIGR02242: phage tail protein domain 17 119 2.6E-29 T 19-04-2016 IPR011748 Uncharacterised protein family, phage tail-like AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 Gene3D G3DSA:3.90.226.10 19 135 3.1E-39 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 Gene3D G3DSA:3.90.226.10 203 235 3.1E-39 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 Pfam PF01343 Peptidase family S49 93 236 9.7E-35 T 19-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 PANTHER PTHR30341:SF1 1 237 6.4E-79 T 19-04-2016 AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 PANTHER PTHR30341 1 237 6.4E-79 T 19-04-2016 AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 SUPERFAMILY SSF52096 170 230 1.03E-38 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0132 3a5b9e732eeccb35c6cd4a5824a5c16e 281 SUPERFAMILY SSF52096 15 139 1.03E-38 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 TIGRFAM TIGR03446 mycothiol_Mca: mycothiol conjugate amidase Mca 15 297 2.4E-154 T 19-04-2016 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 KEGG: 00311+3.5.1.11 AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 PANTHER PTHR12993:SF12 14 304 1.5E-132 T 19-04-2016 AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 Pfam PF02585 GlcNAc-PI de-N-acetylase 18 163 1.6E-28 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 SUPERFAMILY SSF102588 14 297 3.01E-80 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 Gene3D G3DSA:3.40.50.10320 13 297 1.7E-94 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 PANTHER PTHR12993 14 304 1.5E-132 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_8090 8adf9eb529f38c199fddea18ffd120bd 306 Hamap MF_01482 Mycothiol S-conjugate amidase [mca]. 15 298 65.315 T 19-04-2016 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 KEGG: 00311+3.5.1.11 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 Pfam PF01424 R3H domain 125 183 1.6E-14 T 19-04-2016 IPR001374 R3H domain GO:0003676 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 SUPERFAMILY SSF82708 139 183 1.92E-10 T 19-04-2016 IPR001374 R3H domain GO:0003676 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 Gene3D G3DSA:3.30.300.120 38 115 1.4E-21 T 19-04-2016 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 SMART SM00393 105 184 9.6E-25 T 19-04-2016 IPR001374 R3H domain GO:0003676 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 PANTHER PTHR20953 35 183 2.2E-57 T 19-04-2016 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 Gene3D G3DSA:3.30.1370.50 116 184 5.3E-26 T 19-04-2016 IPR001374 R3H domain GO:0003676 AMED_9363 e8d9a9b12a9759a9c987a42f7be3f81e 185 PANTHER PTHR20953:SF0 35 183 2.2E-57 T 19-04-2016 AMED_3951 9040910ef695a4f35581107f96c92ec5 391 PANTHER PTHR13794 6 377 2.4E-84 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_3951 9040910ef695a4f35581107f96c92ec5 391 Pfam PF13378 Enolase C-terminal domain-like 142 349 1.6E-42 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3951 9040910ef695a4f35581107f96c92ec5 391 SMART SM00922 137 239 3.3E-13 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_3951 9040910ef695a4f35581107f96c92ec5 391 PANTHER PTHR13794:SF58 6 377 2.4E-84 T 19-04-2016 AMED_3951 9040910ef695a4f35581107f96c92ec5 391 SUPERFAMILY SSF51604 106 353 8.12E-49 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3951 9040910ef695a4f35581107f96c92ec5 391 Gene3D G3DSA:3.20.20.120 122 347 1.8E-55 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3951 9040910ef695a4f35581107f96c92ec5 391 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 32 118 2.9E-8 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_3951 9040910ef695a4f35581107f96c92ec5 391 Gene3D G3DSA:3.30.390.10 1 121 1.8E-29 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3951 9040910ef695a4f35581107f96c92ec5 391 SUPERFAMILY SSF54826 1 122 4.04E-23 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3194 589f8879b517d79c374067a2d5d3948e 438 Gene3D G3DSA:3.40.190.10 165 338 3.3E-39 T 19-04-2016 AMED_3194 589f8879b517d79c374067a2d5d3948e 438 Pfam PF13416 Bacterial extracellular solute-binding protein 54 345 2.4E-29 T 19-04-2016 AMED_3194 589f8879b517d79c374067a2d5d3948e 438 PANTHER PTHR30061 11 437 1.6E-58 T 19-04-2016 AMED_3194 589f8879b517d79c374067a2d5d3948e 438 Gene3D G3DSA:3.40.190.10 43 164 3.6E-18 T 19-04-2016 AMED_3194 589f8879b517d79c374067a2d5d3948e 438 SUPERFAMILY SSF53850 42 420 5.07E-66 T 19-04-2016 AMED_5298 25f410fc729808eec31fd070bc021ad4 131 Pfam PF02699 Preprotein translocase subunit 4 78 6.9E-21 T 19-04-2016 IPR003849 Preprotein translocase YajC AMED_5298 25f410fc729808eec31fd070bc021ad4 131 PANTHER PTHR33909 4 105 3.2E-21 T 19-04-2016 AMED_5298 25f410fc729808eec31fd070bc021ad4 131 PANTHER PTHR33909:SF1 4 105 3.2E-21 T 19-04-2016 AMED_5298 25f410fc729808eec31fd070bc021ad4 131 SMART SM01323 2 81 1.5E-24 T 19-04-2016 IPR003849 Preprotein translocase YajC AMED_5298 25f410fc729808eec31fd070bc021ad4 131 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 4 81 6.1E-19 T 19-04-2016 IPR003849 Preprotein translocase YajC AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 SUPERFAMILY SSF50129 1 150 3.93E-26 T 19-04-2016 IPR011032 GroES-like AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 SMART SM00829 10 309 3.2E-10 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 PANTHER PTHR11695:SF605 15 311 7.2E-63 T 19-04-2016 AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 SUPERFAMILY SSF51735 114 256 2.04E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 PANTHER PTHR11695 15 311 7.2E-63 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 Gene3D G3DSA:3.40.50.720 145 251 5.6E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 Gene3D G3DSA:3.90.180.10 1 144 2.3E-26 T 19-04-2016 IPR011032 GroES-like AMED_7938 064dc7dfef8fe68f75175305cdd01dac 311 Pfam PF13602 Zinc-binding dehydrogenase 183 308 1.6E-19 T 19-04-2016 AMED_8291 774c0eb0c7e0871a2379e1f045f269b5 329 SUPERFAMILY SSF53686 51 315 9.95E-41 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8291 774c0eb0c7e0871a2379e1f045f269b5 329 PANTHER PTHR10314 52 311 4.9E-31 T 19-04-2016 AMED_8291 774c0eb0c7e0871a2379e1f045f269b5 329 Gene3D G3DSA:3.40.50.1100 51 150 5.2E-16 T 19-04-2016 AMED_8291 774c0eb0c7e0871a2379e1f045f269b5 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 52 296 8.2E-28 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8291 774c0eb0c7e0871a2379e1f045f269b5 329 Gene3D G3DSA:3.40.50.1100 151 316 7.4E-25 T 19-04-2016 AMED_8291 774c0eb0c7e0871a2379e1f045f269b5 329 PANTHER PTHR10314:SF35 52 311 4.9E-31 T 19-04-2016 AMED_2685 b87ee576b0c905c591231cf1b62a12df 155 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 135 1.3E-11 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_2685 b87ee576b0c905c591231cf1b62a12df 155 Gene3D G3DSA:3.30.530.20 2 147 1.3E-13 T 19-04-2016 IPR023393 START-like domain AMED_2685 b87ee576b0c905c591231cf1b62a12df 155 SUPERFAMILY SSF55961 4 151 1.14E-36 T 19-04-2016 AMED_4534 333cdb9b03b668ad6559aa20d92ff5e6 287 Gene3D G3DSA:3.40.630.30 133 260 7.5E-13 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4534 333cdb9b03b668ad6559aa20d92ff5e6 287 SUPERFAMILY SSF55729 84 260 3.95E-15 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4534 333cdb9b03b668ad6559aa20d92ff5e6 287 Pfam PF00583 Acetyltransferase (GNAT) family 186 260 3.6E-6 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_4161 336e3b033dba80ea366940d83dc3a9e0 294 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 211 1.1E-15 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_4161 336e3b033dba80ea366940d83dc3a9e0 294 PANTHER PTHR10366 2 288 9.5E-88 T 19-04-2016 AMED_4161 336e3b033dba80ea366940d83dc3a9e0 294 PANTHER PTHR10366:SF475 2 288 9.5E-88 T 19-04-2016 AMED_4161 336e3b033dba80ea366940d83dc3a9e0 294 Gene3D G3DSA:3.40.50.720 1 281 1.8E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4161 336e3b033dba80ea366940d83dc3a9e0 294 SUPERFAMILY SSF51735 1 281 1.99E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 Pfam PF01614 Bacterial transcriptional regulator 139 254 5.3E-11 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 Gene3D G3DSA:1.10.10.10 21 90 2.0E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 Gene3D G3DSA:3.30.450.40 91 249 4.0E-35 T 19-04-2016 IPR029016 GAF domain-like AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 Pfam PF09339 IclR helix-turn-helix domain 27 72 1.7E-7 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 SMART SM00346 22 111 8.1E-7 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 SUPERFAMILY SSF55781 95 256 2.22E-33 T 19-04-2016 IPR029016 GAF domain-like AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 SUPERFAMILY SSF46785 24 92 2.07E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7848 946ad0b90e894902ddeb879e73f05de1 261 PANTHER PTHR30136 17 256 7.8E-36 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 949 1096 4.3E-15 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1166 1308 1.2E-18 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1617 1757 1.2E-14 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1828 1967 1.0E-15 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 1379 1533 6.4E-10 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SMART SM00560 742 875 9.1E-9 T 19-04-2016 IPR006558 LamG-like jellyroll fold AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 922 1101 6.2E-30 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1145 1313 1.9E-34 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 890 1101 1.9E-31 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1557 1762 1.27E-35 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1149 1311 9.1E-30 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 727 878 1.8E-27 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 932 1099 9.9E-27 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1812 1969 1.4E-20 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1600 1759 1.5E-29 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 1364 1535 9.2E-21 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 676 880 8.13E-36 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1110 1312 1.16E-30 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1772 1971 4.01E-27 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 PANTHER PTHR35889 673 1145 5.5E-12 T 19-04-2016 AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 SUPERFAMILY SSF49899 1319 1542 2.11E-27 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1550 1763 5.2E-40 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1772 1970 1.8E-31 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 1319 1541 2.5E-30 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3800 6493cb1c682602af006976b5f9ce7ebb 2230 Gene3D G3DSA:2.60.120.200 680 881 3.0E-33 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 SUPERFAMILY SSF53474 2 374 3.91E-91 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PANTHER PTHR21661:SF35 1 374 2.2E-99 T 19-04-2016 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 Gene3D G3DSA:3.40.50.1820 2 375 1.0E-130 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PANTHER PTHR21661 1 374 2.2E-99 T 19-04-2016 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 350 372 4.2E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 126 141 4.2E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 171 184 4.2E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PRINTS PR00412 Epoxide hydrolase signature 97 115 4.2E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 PIRSF PIRSF001112 1 375 2.5E-117 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_4336 0807738f8d3eec1f856832c1cc9fa023 376 Pfam PF06441 Epoxide hydrolase N terminus 2 106 6.5E-35 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 Gene3D G3DSA:1.10.260.40 1 53 7.2E-23 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 SUPERFAMILY SSF47413 1 61 1.78E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 Gene3D G3DSA:3.40.50.2300 163 292 7.0E-31 T 19-04-2016 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 PANTHER PTHR30146 3 314 2.0E-84 T 19-04-2016 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 5.2E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 PANTHER PTHR30146:SF45 3 314 2.0E-84 T 19-04-2016 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 SUPERFAMILY SSF53822 64 313 4.35E-42 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 SMART SM00354 3 73 8.8E-21 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 Gene3D G3DSA:3.40.50.2300 54 162 2.4E-13 T 19-04-2016 AMED_5189 9f42f50d2b4710e0eccc0d358080c5c4 316 Pfam PF13377 Periplasmic binding protein-like domain 160 311 4.0E-29 T 19-04-2016 AMED_0591 7fd01e19407c2aaa056af4fb3d1780d1 116 PANTHER PTHR38445 1 113 5.8E-16 T 19-04-2016 AMED_0591 7fd01e19407c2aaa056af4fb3d1780d1 116 Gene3D G3DSA:1.10.10.10 4 76 1.3E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0591 7fd01e19407c2aaa056af4fb3d1780d1 116 SMART SM00345 17 76 7.4E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0591 7fd01e19407c2aaa056af4fb3d1780d1 116 PANTHER PTHR38445:SF2 1 113 5.8E-16 T 19-04-2016 AMED_0591 7fd01e19407c2aaa056af4fb3d1780d1 116 SUPERFAMILY SSF46785 5 86 9.42E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0591 7fd01e19407c2aaa056af4fb3d1780d1 116 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 7.0E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2908 39c23f7a41f8846b2e17caecf7af66a8 1013 SUPERFAMILY SSF52540 298 447 7.53E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2908 39c23f7a41f8846b2e17caecf7af66a8 1013 Gene3D G3DSA:3.40.50.300 322 447 5.0E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8347 62c75c0e5caf5517154926c852f7e777 203 PANTHER PTHR21327 2 194 1.3E-89 T 19-04-2016 AMED_8347 62c75c0e5caf5517154926c852f7e777 203 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 195 36.873 T 19-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_8347 62c75c0e5caf5517154926c852f7e777 203 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 3 193 2.1E-65 T 19-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_8347 62c75c0e5caf5517154926c852f7e777 203 SUPERFAMILY SSF142695 2 171 2.48E-56 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_8347 62c75c0e5caf5517154926c852f7e777 203 Pfam PF00925 GTP cyclohydrolase II 3 169 1.9E-62 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_1138 1cac8c12f310ae0ff991d7a479116be4 340 Pfam PF04228 Putative neutral zinc metallopeptidase 149 332 7.8E-15 T 19-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMED_0896 b7efded000deff46dffd16b061d5ec24 215 Gene3D G3DSA:1.10.10.10 122 212 1.1E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0896 b7efded000deff46dffd16b061d5ec24 215 SMART SM00448 1 110 1.8E-33 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 Pfam PF00486 Transcriptional regulatory protein, C terminal 143 212 2.3E-14 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 SUPERFAMILY SSF52172 1 116 6.12E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0896 b7efded000deff46dffd16b061d5ec24 215 PANTHER PTHR26402:SF316 1 212 2.0E-62 T 19-04-2016 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 Pfam PF00072 Response regulator receiver domain 1 110 5.1E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 SMART SM00862 143 212 4.5E-17 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 SUPERFAMILY SSF46894 125 212 2.01E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 PANTHER PTHR26402 1 212 2.0E-62 T 19-04-2016 AMED_0896 b7efded000deff46dffd16b061d5ec24 215 Gene3D G3DSA:3.40.50.2300 1 116 3.3E-33 T 19-04-2016 AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 Pfam PF00582 Universal stress protein family 9 143 6.6E-24 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 SUPERFAMILY SSF52402 8 150 9.21E-30 T 19-04-2016 AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 Gene3D G3DSA:3.40.50.620 3 144 6.7E-30 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 PANTHER PTHR31964:SF42 8 161 2.3E-21 T 19-04-2016 AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 PRINTS PR01438 Universal stress protein signature 121 143 1.4E-13 T 19-04-2016 IPR006015 Universal stress protein A AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 PRINTS PR01438 Universal stress protein signature 6 24 1.4E-13 T 19-04-2016 IPR006015 Universal stress protein A AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 PRINTS PR01438 Universal stress protein signature 103 115 1.4E-13 T 19-04-2016 IPR006015 Universal stress protein A AMED_5462 56ecaf3fff49a5d090a634ac315aaa87 170 PANTHER PTHR31964 8 161 2.3E-21 T 19-04-2016 AMED_4634 43cc8dc4378d268bc85ec336e5664c1d 307 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 121 138 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_4634 43cc8dc4378d268bc85ec336e5664c1d 307 SUPERFAMILY SSF51430 2 294 9.69E-84 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4634 43cc8dc4378d268bc85ec336e5664c1d 307 Pfam PF00248 Aldo/keto reductase family 1 292 4.5E-64 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4634 43cc8dc4378d268bc85ec336e5664c1d 307 PANTHER PTHR11732 1 307 2.5E-90 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_4634 43cc8dc4378d268bc85ec336e5664c1d 307 Gene3D G3DSA:3.20.20.100 2 296 3.8E-87 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4721 8ff8892702fdd381cc47fd84bc27043d 146 SUPERFAMILY SSF55961 11 135 6.11E-31 T 19-04-2016 AMED_4721 8ff8892702fdd381cc47fd84bc27043d 146 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 129 4.6E-13 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_4721 8ff8892702fdd381cc47fd84bc27043d 146 Gene3D G3DSA:3.30.530.20 11 138 3.9E-33 T 19-04-2016 IPR023393 START-like domain AMED_6953 3d0be3038493a3053d0db96a8d7ecd32 172 SUPERFAMILY SSF50475 36 164 6.55E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6953 3d0be3038493a3053d0db96a8d7ecd32 172 Gene3D G3DSA:2.30.110.10 17 170 9.4E-30 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6953 3d0be3038493a3053d0db96a8d7ecd32 172 PANTHER PTHR35176:SF4 12 118 6.8E-21 T 19-04-2016 AMED_6953 3d0be3038493a3053d0db96a8d7ecd32 172 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 36 107 7.1E-13 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_6953 3d0be3038493a3053d0db96a8d7ecd32 172 PANTHER PTHR35176 12 118 6.8E-21 T 19-04-2016 AMED_2112 7065a5c533b452d48454211937413999 403 Pfam PF01070 FMN-dependent dehydrogenase 43 400 9.2E-126 T 19-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 AMED_2112 7065a5c533b452d48454211937413999 403 Gene3D G3DSA:3.20.20.70 34 400 1.0E-126 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2112 7065a5c533b452d48454211937413999 403 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 298 304 - T 19-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 AMED_2112 7065a5c533b452d48454211937413999 403 PANTHER PTHR10578:SF65 17 399 3.5E-132 T 19-04-2016 AMED_2112 7065a5c533b452d48454211937413999 403 SUPERFAMILY SSF51395 33 399 6.28E-95 T 19-04-2016 AMED_2112 7065a5c533b452d48454211937413999 403 PANTHER PTHR10578 17 399 3.5E-132 T 19-04-2016 AMED_2112 7065a5c533b452d48454211937413999 403 PIRSF PIRSF000138 19 403 1.5E-124 T 19-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 AMED_1444 832cb68ffb758778b1e206d3cb12e4bd 130 Pfam PF14435 SUKH-4 immunity protein 15 125 1.4E-12 T 19-04-2016 IPR025851 SUKH-4 immunity protein AMED_7389 0bded5464ec1d69083708d40bf7beb4d 118 Pfam PF03861 ANTAR domain 33 86 2.8E-19 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_7389 0bded5464ec1d69083708d40bf7beb4d 118 SMART SM01012 31 86 1.2E-19 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_7389 0bded5464ec1d69083708d40bf7beb4d 118 Gene3D G3DSA:1.10.10.10 33 89 8.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7389 0bded5464ec1d69083708d40bf7beb4d 118 SUPERFAMILY SSF52172 32 86 2.34E-6 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4419 4de38a92b91e4c4491bef3be1cef28a9 189 Gene3D G3DSA:1.10.357.10 10 186 3.6E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4419 4de38a92b91e4c4491bef3be1cef28a9 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 2.7E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4419 4de38a92b91e4c4491bef3be1cef28a9 189 PANTHER PTHR30055 1 142 4.5E-15 T 19-04-2016 AMED_4419 4de38a92b91e4c4491bef3be1cef28a9 189 SUPERFAMILY SSF46689 10 83 2.21E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8268 b3908246230893957a5eb8b490292d23 457 Pfam PF01546 Peptidase family M20/M25/M40 86 440 5.6E-20 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_8268 b3908246230893957a5eb8b490292d23 457 SUPERFAMILY SSF53187 12 200 2.23E-45 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 SUPERFAMILY SSF53187 364 449 2.23E-45 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 Pfam PF07687 Peptidase dimerisation domain 215 348 1.3E-8 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_8268 b3908246230893957a5eb8b490292d23 457 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 121 160 - T 19-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMED_8268 b3908246230893957a5eb8b490292d23 457 PANTHER PTHR11014:SF72 12 267 5.3E-93 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 PANTHER PTHR11014:SF72 283 454 5.3E-93 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 PANTHER PTHR11014 12 267 5.3E-93 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 PANTHER PTHR11014 283 454 5.3E-93 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 Gene3D G3DSA:3.30.70.360 210 359 2.2E-31 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_8268 b3908246230893957a5eb8b490292d23 457 Gene3D G3DSA:3.40.630.10 15 209 2.2E-47 T 19-04-2016 AMED_8268 b3908246230893957a5eb8b490292d23 457 Gene3D G3DSA:3.40.630.10 389 450 2.2E-47 T 19-04-2016 AMED_5803 ae765e037abfad858cd3e7b6e6811fcd 1728 PANTHER PTHR32387 206 412 1.6E-17 T 19-04-2016 AMED_5803 ae765e037abfad858cd3e7b6e6811fcd 1728 PANTHER PTHR32387 53 189 1.6E-17 T 19-04-2016 AMED_5803 ae765e037abfad858cd3e7b6e6811fcd 1728 SUPERFAMILY SSF55874 42 149 3.36E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5803 ae765e037abfad858cd3e7b6e6811fcd 1728 Gene3D G3DSA:3.30.565.10 39 239 1.7E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5803 ae765e037abfad858cd3e7b6e6811fcd 1728 Pfam PF13020 Domain of unknown function (DUF3883) 1614 1695 4.7E-7 T 19-04-2016 IPR024975 Domain of unknown function DUF3883 AMED_0898 35f572b3eee7600fb3b89bb565e292db 424 SUPERFAMILY SSF48371 162 310 1.04E-6 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_0898 35f572b3eee7600fb3b89bb565e292db 424 SUPERFAMILY SSF48371 46 73 1.04E-6 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_0898 35f572b3eee7600fb3b89bb565e292db 424 Gene3D G3DSA:1.25.10.10 34 89 4.1E-8 T 19-04-2016 IPR011989 Armadillo-like helical AMED_0898 35f572b3eee7600fb3b89bb565e292db 424 Gene3D G3DSA:1.25.10.10 125 310 4.1E-8 T 19-04-2016 IPR011989 Armadillo-like helical AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Gene3D G3DSA:3.40.50.980 184 334 2.0E-19 T 19-04-2016 AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Gene3D G3DSA:3.30.300.30 425 526 1.1E-31 T 19-04-2016 AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Pfam PF00501 AMP-binding enzyme 29 430 9.0E-73 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 SUPERFAMILY SSF56801 29 529 1.57E-130 T 19-04-2016 AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Gene3D G3DSA:3.40.50.980 30 183 3.6E-37 T 19-04-2016 AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Gene3D G3DSA:2.30.38.10 342 420 6.5E-13 T 19-04-2016 AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 Pfam PF13193 AMP-binding enzyme C-terminal domain 439 517 3.2E-24 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_5340 aca4d3f37aed493ea9e3b8e0fcbee2f2 532 PANTHER PTHR24095 31 526 2.5E-139 T 19-04-2016 AMED_2020 c113d54949ed6ac58eeb9f4f88b306d4 206 SUPERFAMILY SSF52096 6 203 3.66E-41 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2020 c113d54949ed6ac58eeb9f4f88b306d4 206 Gene3D G3DSA:3.90.226.10 6 182 2.6E-37 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2020 c113d54949ed6ac58eeb9f4f88b306d4 206 Pfam PF00378 Enoyl-CoA hydratase/isomerase 32 200 2.8E-27 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_2020 c113d54949ed6ac58eeb9f4f88b306d4 206 PANTHER PTHR11941 6 204 3.2E-67 T 19-04-2016 AMED_2020 c113d54949ed6ac58eeb9f4f88b306d4 206 PANTHER PTHR11941:SF75 6 204 3.2E-67 T 19-04-2016 AMED_8518 28192e7b45c4255960c35292304c52dc 215 Gene3D G3DSA:3.10.350.10 168 212 1.9E-10 T 19-04-2016 IPR018392 LysM domain AMED_8518 28192e7b45c4255960c35292304c52dc 215 Pfam PF01476 LysM domain 168 212 1.1E-8 T 19-04-2016 IPR018392 LysM domain AMED_8518 28192e7b45c4255960c35292304c52dc 215 SUPERFAMILY SSF53955 38 115 4.5E-31 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_8518 28192e7b45c4255960c35292304c52dc 215 SMART SM00257 167 215 1.1E-8 T 19-04-2016 IPR018392 LysM domain AMED_8518 28192e7b45c4255960c35292304c52dc 215 SUPERFAMILY SSF54106 168 212 2.22E-5 T 19-04-2016 IPR018392 LysM domain AMED_8518 28192e7b45c4255960c35292304c52dc 215 Pfam PF06737 Transglycosylase-like domain 39 110 3.5E-33 T 19-04-2016 IPR010618 Transglycosylase-like AMED_8518 28192e7b45c4255960c35292304c52dc 215 Gene3D G3DSA:1.10.530.10 18 114 1.6E-39 T 19-04-2016 AMED_3631 1a319bc337022c20e8a0c4f63b6383f2 312 Gene3D G3DSA:3.40.47.10 169 311 1.1E-20 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3631 1a319bc337022c20e8a0c4f63b6383f2 312 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 222 312 2.2E-16 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_3631 1a319bc337022c20e8a0c4f63b6383f2 312 SUPERFAMILY SSF53901 12 311 9.52E-24 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3631 1a319bc337022c20e8a0c4f63b6383f2 312 Gene3D G3DSA:3.40.47.10 4 168 1.9E-11 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_6602 303804f1893cc71d009dc579f8efbbef 246 PANTHER PTHR30294:SF6 9 246 1.5E-43 T 19-04-2016 AMED_6602 303804f1893cc71d009dc579f8efbbef 246 Pfam PF01061 ABC-2 type transporter 8 207 1.8E-15 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_6602 303804f1893cc71d009dc579f8efbbef 246 PIRSF PIRSF006648 2 244 6.5E-19 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6602 303804f1893cc71d009dc579f8efbbef 246 PANTHER PTHR30294 9 246 1.5E-43 T 19-04-2016 AMED_5608 82076694cbf9b9fad95ab62f07a48985 830 SUPERFAMILY SSF48452 520 721 1.97E-9 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5608 82076694cbf9b9fad95ab62f07a48985 830 Gene3D G3DSA:1.25.40.10 508 724 9.0E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PRINTS PR00069 Aldo-keto reductase signature 137 154 3.38E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PRINTS PR00069 Aldo-keto reductase signature 106 124 3.38E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PRINTS PR00069 Aldo-keto reductase signature 40 64 3.38E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 Gene3D G3DSA:3.20.20.100 1 315 2.8E-99 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 SUPERFAMILY SSF51430 1 315 5.11E-97 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 PANTHER PTHR11732 1 315 3.8E-130 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_2185 57b0ec1f25c862b6b2e0d79c17e9ba55 329 Pfam PF00248 Aldo/keto reductase family 15 314 4.5E-75 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_8112 6456e92246f2eb6a18cdaf8c3499eaca 277 SUPERFAMILY SSF63817 128 264 1.18E-10 T 19-04-2016 IPR023365 Sortase domain AMED_8112 6456e92246f2eb6a18cdaf8c3499eaca 277 Gene3D G3DSA:2.40.260.10 178 256 1.6E-4 T 19-04-2016 IPR023365 Sortase domain AMED_8112 6456e92246f2eb6a18cdaf8c3499eaca 277 Pfam PF04203 Sortase family 169 274 6.4E-7 T 19-04-2016 IPR005754 Sortase family AMED_6890 70082e100f8a14bdada4addc88207abb 230 PANTHER PTHR33204:SF9 1 159 1.2E-31 T 19-04-2016 AMED_6890 70082e100f8a14bdada4addc88207abb 230 PANTHER PTHR33204 1 159 1.2E-31 T 19-04-2016 AMED_6890 70082e100f8a14bdada4addc88207abb 230 Gene3D G3DSA:3.30.1050.10 130 214 2.0E-6 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_6890 70082e100f8a14bdada4addc88207abb 230 Pfam PF01638 HxlR-like helix-turn-helix 20 105 8.2E-23 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6890 70082e100f8a14bdada4addc88207abb 230 SUPERFAMILY SSF55718 123 216 8.48E-10 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_6890 70082e100f8a14bdada4addc88207abb 230 SUPERFAMILY SSF46785 7 119 1.06E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6890 70082e100f8a14bdada4addc88207abb 230 Gene3D G3DSA:1.10.10.10 5 106 1.7E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1213 4c23a068333dae800acf520bba303245 175 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 85 165 3.2E-23 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_1213 4c23a068333dae800acf520bba303245 175 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 85 166 2.5E-28 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_1213 4c23a068333dae800acf520bba303245 175 PANTHER PTHR10815 3 168 3.3E-65 T 19-04-2016 AMED_1213 4c23a068333dae800acf520bba303245 175 PANTHER PTHR10815:SF7 3 168 3.3E-65 T 19-04-2016 AMED_1213 4c23a068333dae800acf520bba303245 175 SUPERFAMILY SSF46767 84 167 1.57E-25 T 19-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 AMED_1213 4c23a068333dae800acf520bba303245 175 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 134 140 - T 19-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 AMED_1213 4c23a068333dae800acf520bba303245 175 Gene3D G3DSA:3.30.160.70 2 79 6.7E-6 T 19-04-2016 AMED_1213 4c23a068333dae800acf520bba303245 175 SUPERFAMILY SSF53155 2 80 8.63E-11 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_1213 4c23a068333dae800acf520bba303245 175 Gene3D G3DSA:1.10.10.10 84 169 1.5E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2334 37c3fbb0adba7313e52f19b2dba19057 353 Pfam PF00583 Acetyltransferase (GNAT) family 262 322 1.3E-6 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2334 37c3fbb0adba7313e52f19b2dba19057 353 Gene3D G3DSA:3.30.70.260 20 53 8.4E-4 T 19-04-2016 AMED_2334 37c3fbb0adba7313e52f19b2dba19057 353 SUPERFAMILY SSF55021 14 60 9.92E-6 T 19-04-2016 AMED_2334 37c3fbb0adba7313e52f19b2dba19057 353 SUPERFAMILY SSF55729 205 334 1.15E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2334 37c3fbb0adba7313e52f19b2dba19057 353 Gene3D G3DSA:3.40.630.30 201 338 4.8E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 7.6E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 7.6E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 201 215 7.6E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 7.6E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 Gene3D G3DSA:3.40.50.1820 2 256 5.2E-66 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 SUPERFAMILY SSF53474 2 256 1.45E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PANTHER PTHR10992:SF771 1 257 4.1E-57 T 19-04-2016 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 Pfam PF00561 alpha/beta hydrolase fold 15 243 6.1E-26 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PANTHER PTHR10992 1 257 4.1E-57 T 19-04-2016 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 199 215 1.4E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 232 254 1.4E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 40 55 1.4E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6900 90ec2ebcb1a5ec34cb75a6542dcc5d34 262 PRINTS PR00412 Epoxide hydrolase signature 20 38 1.4E-12 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5026 d58038f21889517516a81d05449b1251 191 Gene3D G3DSA:3.30.70.380 86 182 5.7E-9 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_5026 d58038f21889517516a81d05449b1251 191 PANTHER PTHR11538 14 180 1.4E-14 T 19-04-2016 AMED_5026 d58038f21889517516a81d05449b1251 191 SUPERFAMILY SSF55681 12 63 1.09E-10 T 19-04-2016 AMED_5026 d58038f21889517516a81d05449b1251 191 Pfam PF03147 Ferredoxin-fold anticodon binding domain 83 182 6.2E-8 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_5026 d58038f21889517516a81d05449b1251 191 SUPERFAMILY SSF54991 78 182 6.41E-10 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_5026 d58038f21889517516a81d05449b1251 191 Gene3D G3DSA:3.30.930.10 4 73 4.5E-17 T 19-04-2016 AMED_5026 d58038f21889517516a81d05449b1251 191 Pfam PF01409 tRNA synthetases class II core domain (F) 10 65 1.3E-14 T 19-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMED_5026 d58038f21889517516a81d05449b1251 191 SMART SM00896 83 183 1.2E-6 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMED_8970 1517157f95f4d054267411ac62f58e49 275 SUPERFAMILY SSF161098 7 263 2.62E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8970 1517157f95f4d054267411ac62f58e49 275 Gene3D G3DSA:1.10.3720.10 7 258 1.1E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8970 1517157f95f4d054267411ac62f58e49 275 PANTHER PTHR32243:SF4 1 273 2.3E-42 T 19-04-2016 AMED_8970 1517157f95f4d054267411ac62f58e49 275 PANTHER PTHR32243 1 273 2.3E-42 T 19-04-2016 AMED_8970 1517157f95f4d054267411ac62f58e49 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 260 4.0E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 345 485 1.1E-24 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 171 336 5.9E-59 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 Gene3D G3DSA:3.20.20.80 168 518 5.1E-106 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 SUPERFAMILY SSF51445 170 514 1.16E-107 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 193 214 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 164 181 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 322 335 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 300 318 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 467 484 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 449 465 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 252 269 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PRINTS PR00738 Glycosyl hydrolase family 20 signature 122 142 7.9E-47 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PANTHER PTHR22600:SF21 36 517 1.3E-146 T 19-04-2016 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 PANTHER PTHR22600 36 517 1.3E-146 T 19-04-2016 AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 SUPERFAMILY SSF55545 29 169 7.33E-27 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 Gene3D G3DSA:3.30.379.10 23 167 7.0E-33 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_8265 e259e1bd73f294c88f6d40be759d60c6 521 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 37 167 5.5E-22 T 19-04-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_3428 fcbb086858880f755e0ff6cc7e351dea 208 SUPERFAMILY SSF51197 31 203 3.57E-39 T 19-04-2016 AMED_3428 fcbb086858880f755e0ff6cc7e351dea 208 Gene3D G3DSA:2.60.120.590 92 203 4.3E-16 T 19-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMED_3428 fcbb086858880f755e0ff6cc7e351dea 208 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 83 203 1.0E-13 T 19-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMED_3428 fcbb086858880f755e0ff6cc7e351dea 208 PANTHER PTHR31212 34 205 2.5E-54 T 19-04-2016 IPR032854 Alkylated DNA repair protein alkB homologue 3 GO:0006281|GO:0006307|GO:0035552|GO:0051213 KEGG: 00260+1.14.11.-|KEGG: 00361+1.14.11.-|KEGG: 00904+1.14.11.- AMED_3428 fcbb086858880f755e0ff6cc7e351dea 208 PANTHER PTHR31212:SF4 34 205 2.5E-54 T 19-04-2016 AMED_5145 22b01f713e68081a13a39843075b8dea 114 Gene3D G3DSA:3.30.750.24 12 101 7.0E-10 T 19-04-2016 IPR002645 STAS domain AMED_5145 22b01f713e68081a13a39843075b8dea 114 SUPERFAMILY SSF52091 12 101 1.92E-9 T 19-04-2016 IPR002645 STAS domain AMED_1021 15fc044e874ebace743928f9fbedbc64 181 SUPERFAMILY SSF55811 28 162 2.71E-19 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_1021 15fc044e874ebace743928f9fbedbc64 181 Gene3D G3DSA:3.90.79.10 47 172 6.8E-17 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_1021 15fc044e874ebace743928f9fbedbc64 181 Pfam PF00293 NUDIX domain 47 162 9.7E-10 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_2201 153bda785053d92a0cf763f6fec71844 272 SUPERFAMILY SSF46626 139 228 2.44E-28 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMED_2201 153bda785053d92a0cf763f6fec71844 272 PANTHER PTHR33751:SF1 30 236 3.3E-49 T 19-04-2016 AMED_2201 153bda785053d92a0cf763f6fec71844 272 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 153 226 2.0E-13 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMED_2201 153bda785053d92a0cf763f6fec71844 272 Pfam PF00034 Cytochrome c 61 133 1.7E-7 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMED_2201 153bda785053d92a0cf763f6fec71844 272 SUPERFAMILY SSF46626 25 138 3.53E-18 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMED_2201 153bda785053d92a0cf763f6fec71844 272 PANTHER PTHR33751 30 236 3.3E-49 T 19-04-2016 AMED_2201 153bda785053d92a0cf763f6fec71844 272 PIRSF PIRSF000007 1 272 2.1E-115 T 19-04-2016 IPR009152 Ubiquinol-cytochrome-c reductase, cytochrome c subunit GO:0005506|GO:0009055|GO:0016021|GO:0020037 AMED_2201 153bda785053d92a0cf763f6fec71844 272 Gene3D G3DSA:1.10.760.10 55 139 6.0E-20 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMED_2201 153bda785053d92a0cf763f6fec71844 272 Gene3D G3DSA:1.10.760.10 153 233 1.7E-19 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMED_4095 f64081b6d49d1b8b688762b2c29bc824 162 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 26 158 4.9E-24 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_4095 f64081b6d49d1b8b688762b2c29bc824 162 SUPERFAMILY SSF55961 14 160 8.62E-44 T 19-04-2016 AMED_4095 f64081b6d49d1b8b688762b2c29bc824 162 Gene3D G3DSA:3.30.530.20 8 161 1.8E-41 T 19-04-2016 IPR023393 START-like domain AMED_4095 f64081b6d49d1b8b688762b2c29bc824 162 PANTHER PTHR36929 1 162 1.1E-25 T 19-04-2016 AMED_4095 f64081b6d49d1b8b688762b2c29bc824 162 PANTHER PTHR36929:SF1 1 162 1.1E-25 T 19-04-2016 AMED_8493 86af0680388da29f6dd18180dc085a6c 322 SUPERFAMILY SSF47240 23 283 4.65E-50 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_8493 86af0680388da29f6dd18180dc085a6c 322 PANTHER PTHR23409:SF22 20 322 7.0E-33 T 19-04-2016 AMED_8493 86af0680388da29f6dd18180dc085a6c 322 PANTHER PTHR23409 20 322 7.0E-33 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMED_8493 86af0680388da29f6dd18180dc085a6c 322 Gene3D G3DSA:1.10.620.20 28 285 1.1E-44 T 19-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 AMED_8493 86af0680388da29f6dd18180dc085a6c 322 Pfam PF00268 Ribonucleotide reductase, small chain 32 280 4.4E-12 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMED_7244 775f92283eb7b955273b9e5323704c80 212 SUPERFAMILY SSF51735 1 208 1.88E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7244 775f92283eb7b955273b9e5323704c80 212 Pfam PF13460 NAD(P)H-binding 7 200 7.3E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7244 775f92283eb7b955273b9e5323704c80 212 PANTHER PTHR15020 1 206 7.0E-41 T 19-04-2016 AMED_7244 775f92283eb7b955273b9e5323704c80 212 Gene3D G3DSA:3.40.50.720 1 211 8.1E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3463 bac3074c3d56b77981d1557e261dd3c3 326 SUPERFAMILY SSF161098 105 305 9.16E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3463 bac3074c3d56b77981d1557e261dd3c3 326 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 320 1.2E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3463 bac3074c3d56b77981d1557e261dd3c3 326 Gene3D G3DSA:1.10.3720.10 102 316 6.8E-14 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3463 bac3074c3d56b77981d1557e261dd3c3 326 PANTHER PTHR30465 1 325 1.4E-89 T 19-04-2016 AMED_3463 bac3074c3d56b77981d1557e261dd3c3 326 PANTHER PTHR30465:SF0 1 325 1.4E-89 T 19-04-2016 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 Gene3D G3DSA:3.30.465.10 108 228 1.4E-45 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 Pfam PF02913 FAD linked oxidases, C-terminal domain 228 468 3.5E-60 T 19-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 Gene3D G3DSA:1.10.45.10 430 469 1.2E-12 T 19-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 Pfam PF01565 FAD binding domain 52 190 4.2E-43 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 PANTHER PTHR11748 13 470 1.6E-152 T 19-04-2016 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 Gene3D G3DSA:3.30.43.10 4 106 4.4E-29 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 PANTHER PTHR11748:SF78 13 470 1.6E-152 T 19-04-2016 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 SUPERFAMILY SSF56176 14 228 2.34E-76 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_9125 ad3394744e3368ba0d2ae79eda343bf8 473 SUPERFAMILY SSF55103 232 470 1.14E-58 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_0410 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 PANTHER PTHR11895 11 454 3.2E-158 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0410 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 SUPERFAMILY SSF75304 7 445 1.44E-111 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0410 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 PANTHER PTHR11895:SF103 11 454 3.2E-158 T 19-04-2016 AMED_0410 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 Gene3D G3DSA:3.90.1300.10 10 452 8.6E-114 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0410 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 ProSitePatterns PS00571 Amidases signature. 153 184 - T 19-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0410 7f1d5dbb8784c653f0fdc4e3a15c93e5 458 Pfam PF01425 Amidase 27 436 3.8E-95 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 SUPERFAMILY SSF56801 13 452 4.45E-91 T 19-04-2016 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 ProSitePatterns PS00455 Putative AMP-binding domain signature. 130 141 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7501 25a82cdecff8242d61787f7e7350e912 454 Pfam PF13193 AMP-binding enzyme C-terminal domain 370 442 2.9E-14 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7501 25a82cdecff8242d61787f7e7350e912 454 Gene3D G3DSA:2.30.38.10 293 348 1.5E-12 T 19-04-2016 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 Gene3D G3DSA:3.40.50.980 16 145 1.0E-5 T 19-04-2016 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 Gene3D G3DSA:3.30.300.30 361 451 1.2E-20 T 19-04-2016 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 PANTHER PTHR24096 29 449 4.5E-81 T 19-04-2016 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 Gene3D G3DSA:3.40.50.980 160 280 2.0E-28 T 19-04-2016 AMED_7501 25a82cdecff8242d61787f7e7350e912 454 Pfam PF00501 AMP-binding enzyme 17 358 2.3E-46 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 PANTHER PTHR23501:SF11 6 375 3.1E-81 T 19-04-2016 AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 Pfam PF07690 Major Facilitator Superfamily 14 226 5.4E-23 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 SUPERFAMILY SSF103473 5 379 1.31E-50 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 PANTHER PTHR23501 6 375 3.1E-81 T 19-04-2016 AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 Gene3D G3DSA:1.20.1250.20 214 378 5.1E-14 T 19-04-2016 AMED_1064 5f77bffb455db9a9af3312a3c559f2bc 410 Gene3D G3DSA:1.20.1250.20 10 186 6.2E-23 T 19-04-2016 AMED_0562 ca1b5b45ac39a2f601ade36b408e00d0 394 PANTHER PTHR36836 2 390 2.3E-166 T 19-04-2016 AMED_0562 ca1b5b45ac39a2f601ade36b408e00d0 394 PANTHER PTHR36836:SF2 2 390 2.3E-166 T 19-04-2016 AMED_0562 ca1b5b45ac39a2f601ade36b408e00d0 394 Pfam PF04230 Polysaccharide pyruvyl transferase 17 321 9.2E-19 T 19-04-2016 IPR007345 Polysaccharide pyruvyl transferase AMED_4968 8ce729186158b67aa16a0384efbe6af6 242 Pfam PF14011 EspG family 5 235 3.7E-48 T 19-04-2016 IPR025734 EspG family AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 Pfam PF06580 Histidine kinase 194 272 3.4E-25 T 19-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 PANTHER PTHR34220 17 389 5.3E-66 T 19-04-2016 AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 291 390 3.7E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 Gene3D G3DSA:3.30.565.10 249 389 2.3E-14 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 SMART SM00387 283 390 5.9E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 SUPERFAMILY SSF55874 249 389 6.02E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0131 55ecf14a8f8df24d8ccb17348c70421a 441 PANTHER PTHR34220:SF3 17 389 5.3E-66 T 19-04-2016 AMED_9246 b7fe398a98f82a664bb412c7b2ddec7e 90 SUPERFAMILY SSF47413 10 77 5.32E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9246 b7fe398a98f82a664bb412c7b2ddec7e 90 PANTHER PTHR10245 1 74 3.1E-18 T 19-04-2016 AMED_9246 b7fe398a98f82a664bb412c7b2ddec7e 90 Gene3D G3DSA:1.10.260.40 8 74 1.7E-26 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9246 b7fe398a98f82a664bb412c7b2ddec7e 90 Pfam PF13560 Helix-turn-helix domain 16 76 3.8E-13 T 19-04-2016 AMED_9246 b7fe398a98f82a664bb412c7b2ddec7e 90 SMART SM00530 20 74 3.1E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_9246 b7fe398a98f82a664bb412c7b2ddec7e 90 PANTHER PTHR10245:SF59 1 74 3.1E-18 T 19-04-2016 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 PANTHER PTHR30173:SF3 56 243 4.7E-64 T 19-04-2016 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 Gene3D G3DSA:1.10.1740.10 69 179 4.0E-19 T 19-04-2016 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 81 242 5.5E-25 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 SUPERFAMILY SSF88659 171 244 2.8E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 PANTHER PTHR30173 56 243 4.7E-64 T 19-04-2016 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 Gene3D G3DSA:1.10.10.10 184 245 1.1E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 Pfam PF04542 Sigma-70 region 2 85 157 4.1E-12 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 SUPERFAMILY SSF88946 69 172 9.1E-18 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6376 dc5dd07445e09db1edafceeb7e058882 248 Pfam PF08281 Sigma-70, region 4 187 239 1.4E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6661 7aea7b8b2978efea748b3fe1e48fca03 245 Gene3D G3DSA:3.40.50.1400 4 120 6.5E-26 T 19-04-2016 AMED_6661 7aea7b8b2978efea748b3fe1e48fca03 245 Gene3D G3DSA:3.40.50.1400 126 237 1.9E-20 T 19-04-2016 AMED_6661 7aea7b8b2978efea748b3fe1e48fca03 245 PANTHER PTHR33542 5 245 7.1E-46 T 19-04-2016 AMED_6661 7aea7b8b2978efea748b3fe1e48fca03 245 Pfam PF01903 CbiX 10 112 2.4E-22 T 19-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 AMED_6661 7aea7b8b2978efea748b3fe1e48fca03 245 Pfam PF01903 CbiX 134 230 5.6E-13 T 19-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 AMED_6661 7aea7b8b2978efea748b3fe1e48fca03 245 SUPERFAMILY SSF53800 4 236 1.31E-38 T 19-04-2016 AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 Pfam PF03308 ArgK protein 23 283 6.4E-97 T 19-04-2016 AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 PANTHER PTHR23408:SF3 6 316 2.2E-98 T 19-04-2016 AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 PANTHER PTHR23408 6 316 2.2E-98 T 19-04-2016 AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 SMART SM00382 49 291 3.1E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 17 315 2.4E-103 T 19-04-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 Gene3D G3DSA:3.40.50.300 64 253 3.4E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 SUPERFAMILY SSF52540 5 316 6.75E-80 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1579 518a6c09b4f6ef4d03cd5b8b25ff77c5 321 Gene3D G3DSA:3.40.50.300 8 63 3.1E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3929 00d131540c55e7f58dbec5f646579de4 330 Gene3D G3DSA:3.90.180.10 5 152 2.8E-39 T 19-04-2016 IPR011032 GroES-like AMED_3929 00d131540c55e7f58dbec5f646579de4 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 93 4.7E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3929 00d131540c55e7f58dbec5f646579de4 330 Pfam PF00107 Zinc-binding dehydrogenase 158 274 1.0E-26 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3929 00d131540c55e7f58dbec5f646579de4 330 SMART SM00829 17 328 5.9E-49 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3929 00d131540c55e7f58dbec5f646579de4 330 Gene3D G3DSA:3.40.50.720 153 268 1.2E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3929 00d131540c55e7f58dbec5f646579de4 330 PANTHER PTHR11695 21 326 1.6E-79 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3929 00d131540c55e7f58dbec5f646579de4 330 SUPERFAMILY SSF51735 120 295 1.07E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3929 00d131540c55e7f58dbec5f646579de4 330 SUPERFAMILY SSF50129 6 155 1.28E-33 T 19-04-2016 IPR011032 GroES-like AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 SUPERFAMILY SSF53223 1 107 8.63E-23 T 19-04-2016 AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 PANTHER PTHR21089:SF6 1 252 8.3E-63 T 19-04-2016 AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 Gene3D G3DSA:3.40.192.10 3 115 5.5E-25 T 19-04-2016 AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 PANTHER PTHR21089 1 252 8.3E-63 T 19-04-2016 AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 SUPERFAMILY SSF51735 109 252 2.25E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 Gene3D G3DSA:3.40.50.720 116 245 6.6E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0626 b2412f15eee67bc0403565e8d0e71b40 263 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 94 2.0E-13 T 19-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_0553 37fce12cfd99aadecba51b8f93d775a8 710 Gene3D G3DSA:1.50.10.110 91 336 1.3E-7 T 19-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 AMED_0553 37fce12cfd99aadecba51b8f93d775a8 710 SUPERFAMILY SSF48230 115 345 1.46E-25 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_0553 37fce12cfd99aadecba51b8f93d775a8 710 PANTHER PTHR39210 1 583 2.6E-100 T 19-04-2016 AMED_0553 37fce12cfd99aadecba51b8f93d775a8 710 Pfam PF16889 Heparinase II/III N-terminus 127 328 7.8E-13 T 19-04-2016 IPR031680 Heparin-sulfate lyase, N-terminal MetaCyc: PWY-7651 AMED_0553 37fce12cfd99aadecba51b8f93d775a8 710 Pfam PF07940 Heparinase II/III-like protein 402 695 8.2E-46 T 19-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.10.580.10 327 454 2.8E-19 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 SUPERFAMILY SSF54631 325 455 3.16E-15 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.40.50.1100 43 147 1.7E-38 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 PANTHER PTHR10314 4 352 4.5E-226 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 SUPERFAMILY SSF53686 2 317 6.94E-96 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Pfam PF00571 CBS domain 406 454 6.6E-4 T 19-04-2016 IPR000644 CBS domain AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Pfam PF00571 CBS domain 344 391 1.2E-4 T 19-04-2016 IPR000644 CBS domain AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 SMART SM00116 339 392 0.029 T 19-04-2016 IPR000644 CBS domain AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 SMART SM00116 409 454 0.35 T 19-04-2016 IPR000644 CBS domain AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 PANTHER PTHR10314:SF104 4 352 4.5E-226 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 19-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.40.50.1100 153 313 6.2E-68 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Gene3D G3DSA:3.40.50.1100 3 42 6.2E-68 T 19-04-2016 AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 296 3.5E-69 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8107 558ac4627b58121bc62f08cdcf5ec1e7 456 TIGRFAM TIGR01137 cysta_beta: cystathionine beta-synthase 4 454 3.6E-199 T 19-04-2016 IPR005857 Cystathionine beta-synthase GO:0004122|GO:0005737|GO:0019343 KEGG: 00260+4.2.1.22|KEGG: 00270+4.2.1.22|MetaCyc: PWY-801|UniPathway: UPA00136 AMED_6542 2d02c341e128360c402ea60bb0cd4ec9 258 SUPERFAMILY SSF55781 38 175 8.59E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_6542 2d02c341e128360c402ea60bb0cd4ec9 258 SMART SM01012 165 243 5.1E-6 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6542 2d02c341e128360c402ea60bb0cd4ec9 258 Gene3D G3DSA:3.30.450.40 38 174 6.2E-9 T 19-04-2016 IPR029016 GAF domain-like AMED_6542 2d02c341e128360c402ea60bb0cd4ec9 258 Pfam PF03861 ANTAR domain 201 243 4.7E-6 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6542 2d02c341e128360c402ea60bb0cd4ec9 258 Gene3D G3DSA:1.10.10.10 201 245 6.2E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6542 2d02c341e128360c402ea60bb0cd4ec9 258 Pfam PF13185 GAF domain 38 174 2.7E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 Pfam PF05729 NACHT domain 282 444 2.6E-9 T 19-04-2016 AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 Pfam PF13646 HEAT repeats 982 1071 1.8E-7 T 19-04-2016 AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 Gene3D G3DSA:1.25.10.10 893 1074 4.2E-15 T 19-04-2016 IPR011989 Armadillo-like helical AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 SUPERFAMILY SSF52540 240 441 4.04E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 Gene3D G3DSA:3.40.50.300 275 387 1.0E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 Gene3D G3DSA:3.40.50.300 427 450 1.0E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0020 8fae5ea1c3a04cbcd2d2730f41766f1f 1133 SUPERFAMILY SSF48371 805 1099 2.17E-18 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_5526 53c03e503066009d990a9bfab2997d13 150 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 142 2.7E-8 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_5526 53c03e503066009d990a9bfab2997d13 150 Gene3D G3DSA:3.10.180.10 4 144 2.3E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5526 53c03e503066009d990a9bfab2997d13 150 SUPERFAMILY SSF54593 4 146 3.36E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 Gene3D G3DSA:3.20.20.140 12 355 9.5E-97 T 19-04-2016 AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 PANTHER PTHR11409 8 357 2.4E-95 T 19-04-2016 AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 SUPERFAMILY SSF51556 12 354 3.7E-67 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 PANTHER PTHR11409:SF43 8 357 2.4E-95 T 19-04-2016 AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 Hamap MF_00540 Adenosine deaminase [add]. 11 356 51.324 T 19-04-2016 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 Pfam PF00962 Adenosine/AMP deaminase 16 353 2.3E-85 T 19-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 AMED_0862 d078a697323f6e004ecd82ce15f8b68c 364 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 17 354 9.5E-76 T 19-04-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.8E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.8E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.8E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.8E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.8E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PANTHER PTHR24322 155 191 4.2E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PANTHER PTHR24322 12 139 4.2E-49 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 191 2.2E-5 T 19-04-2016 AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 SUPERFAMILY SSF51735 6 243 3.1E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 3.1E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.1E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 244 1.9E-64 T 19-04-2016 AMED_5430 5900493cecc4b73edf52f32ffa52cb65 244 Gene3D G3DSA:3.40.50.720 2 243 2.7E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Pfam PF13193 AMP-binding enzyme C-terminal domain 428 501 2.1E-19 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:2.30.38.10 337 409 5.7E-22 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Pfam PF00501 AMP-binding enzyme 18 419 1.8E-67 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 SUPERFAMILY SSF56801 6 516 6.28E-107 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 PANTHER PTHR24096 11 501 5.2E-86 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:3.30.300.30 416 512 4.6E-25 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 PANTHER PTHR24096:SF232 11 501 5.2E-86 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:3.40.50.980 159 191 2.2E-22 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:3.40.50.980 10 123 2.2E-22 T 19-04-2016 AMED_3866 a91b6796fa49ba0679e8579789f50980 529 Gene3D G3DSA:3.40.50.980 192 327 1.9E-16 T 19-04-2016 AMED_1041 d12b32d9896e642b6b4d12eba1503c47 261 PANTHER PTHR31223:SF1 37 255 1.6E-94 T 19-04-2016 AMED_1041 d12b32d9896e642b6b4d12eba1503c47 261 PANTHER PTHR31223 37 255 1.6E-94 T 19-04-2016 AMED_1041 d12b32d9896e642b6b4d12eba1503c47 261 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 78 252 2.0E-43 T 19-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMED_1041 d12b32d9896e642b6b4d12eba1503c47 261 Pfam PF03641 Possible lysine decarboxylase 120 248 7.4E-33 T 19-04-2016 IPR031100 LOG family AMED_1041 d12b32d9896e642b6b4d12eba1503c47 261 SUPERFAMILY SSF102405 48 250 3.21E-63 T 19-04-2016 AMED_1041 d12b32d9896e642b6b4d12eba1503c47 261 Gene3D G3DSA:3.40.50.450 57 259 2.6E-67 T 19-04-2016 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00825 Beta-ketoacyl synthase 38 460 2.8E-204 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF55048 678 743 6.67E-13 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.47.10 297 461 3.8E-67 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00823 Phosphopantetheine attachment site 1618 1690 6.2E-32 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1334 1509 2.3E-43 T 19-04-2016 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 197 213 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.366.10 544 674 5.5E-75 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.366.10 743 861 5.5E-75 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 410 494 2.8E-11 T 19-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF14765 Polyketide synthase dehydratase 911 1181 2.0E-59 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00826 911 1070 3.9E-81 T 19-04-2016 IPR020807 Polyketide synthase, dehydratase domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF53901 34 406 5.24E-102 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 PANTHER PTHR11712 36 1699 0.0 T 19-04-2016 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.50.720 1333 1508 4.1E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF00698 Acyl transferase domain 555 867 6.6E-84 T 19-04-2016 IPR014043 Acyl transferase AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF00550 Phosphopantetheine attachment site 1620 1686 5.9E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 292 407 7.4E-46 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF47336 1612 1696 7.2E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 557 848 4.5E-120 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF51735 1330 1562 2.02E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF52151 744 838 1.36E-68 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF52151 553 679 1.36E-68 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.40.47.10 38 296 1.1E-88 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SUPERFAMILY SSF51735 1189 1321 1.58E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:1.10.1200.10 1617 1691 1.3E-22 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF08659 KR domain 1334 1507 1.2E-46 T 19-04-2016 IPR013968 Polyketide synthase, ketoreductase domain AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 PANTHER PTHR11712:SF242 36 1699 0.0 T 19-04-2016 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1645 1660 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 SMART SM01294 1619 1686 4.8E-5 T 19-04-2016 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Gene3D G3DSA:3.30.70.250 678 742 3.6E-8 T 19-04-2016 AMED_0619 1d69d447fcd651e2e265eb70fcd3101f 1763 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 36 284 7.3E-89 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4253 045b635f32b1d3aee084acd7f8899a3f 178 SUPERFAMILY SSF81296 31 125 1.75E-20 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_4253 045b635f32b1d3aee084acd7f8899a3f 178 PANTHER PTHR34820 7 173 2.0E-13 T 19-04-2016 AMED_4253 045b635f32b1d3aee084acd7f8899a3f 178 Gene3D G3DSA:2.60.40.1220 31 126 1.2E-24 T 19-04-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like AMED_4253 045b635f32b1d3aee084acd7f8899a3f 178 Pfam PF04234 CopC domain 32 125 3.6E-24 T 19-04-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMED_0104 fa94137dcecb5643cf575872cce22b60 252 Pfam PF00106 short chain dehydrogenase 7 201 3.2E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PANTHER PTHR24322 158 189 6.6E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PANTHER PTHR24322 10 142 6.6E-50 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 Gene3D G3DSA:3.40.50.720 2 248 1.2E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0104 fa94137dcecb5643cf575872cce22b60 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 193 5.1E-4 T 19-04-2016 AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 6.3E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 6.3E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 6.3E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PANTHER PTHR24322:SF356 158 189 6.6E-50 T 19-04-2016 AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PANTHER PTHR24322:SF356 10 142 6.6E-50 T 19-04-2016 AMED_0104 fa94137dcecb5643cf575872cce22b60 252 SUPERFAMILY SSF51735 7 248 6.02E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0104 fa94137dcecb5643cf575872cce22b60 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0104 fa94137dcecb5643cf575872cce22b60 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 PANTHER PTHR11647 1 454 3.2E-197 T 19-04-2016 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 SUPERFAMILY SSF51338 358 454 3.24E-33 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 Pfam PF01979 Amidohydrolase family 49 435 1.3E-29 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 SUPERFAMILY SSF51338 1 65 1.83E-11 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 Gene3D G3DSA:2.30.40.10 3 67 2.1E-29 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 Gene3D G3DSA:3.20.20.140 68 374 2.2E-120 T 19-04-2016 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 Gene3D G3DSA:2.30.40.10 375 449 2.5E-13 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 453 3.4E-178 T 19-04-2016 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: REACT_18266 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 PANTHER PTHR11647:SF1 1 454 3.2E-197 T 19-04-2016 AMED_6645 a2485dadc1c8b79833c1fc9a7288a9ba 460 SUPERFAMILY SSF51556 53 381 6.81E-108 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 PANTHER PTHR22754 26 504 5.8E-134 T 19-04-2016 AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 Gene3D G3DSA:3.40.50.980 27 169 6.0E-24 T 19-04-2016 AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 Pfam PF00501 AMP-binding enzyme 28 410 2.1E-61 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 SUPERFAMILY SSF56801 26 507 1.44E-94 T 19-04-2016 AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 Gene3D G3DSA:3.40.50.980 170 333 1.3E-25 T 19-04-2016 AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 Gene3D G3DSA:2.30.38.10 335 402 9.6E-11 T 19-04-2016 AMED_0730 26c06ce7476ca1c908feae8e00d9cf8f 512 Gene3D G3DSA:3.30.300.30 403 503 9.5E-12 T 19-04-2016 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 PANTHER PTHR22845:SF4 105 472 6.0E-41 T 19-04-2016 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 PANTHER PTHR22845 105 472 6.0E-41 T 19-04-2016 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 Gene3D G3DSA:3.40.50.300 129 183 8.2E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 Gene3D G3DSA:1.25.40.10 623 789 2.2E-23 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SUPERFAMILY SSF48452 559 584 1.29E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SUPERFAMILY SSF48452 631 785 1.29E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SUPERFAMILY SSF52540 115 376 1.53E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 Pfam PF00931 NB-ARC domain 229 380 2.7E-6 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SMART SM00028 555 588 240.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SMART SM00028 635 668 0.081 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SMART SM00028 675 708 1.6 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SMART SM00028 715 748 56.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SMART SM00028 755 788 24.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 SMART SM00028 595 628 150.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 Gene3D G3DSA:1.25.40.10 541 622 7.8E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 Pfam PF13424 Tetratricopeptide repeat 635 707 8.9E-15 T 19-04-2016 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 PRINTS PR00364 Disease resistance protein signature 226 240 5.3E-6 T 19-04-2016 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 PRINTS PR00364 Disease resistance protein signature 311 325 5.3E-6 T 19-04-2016 AMED_8149 d6ae994ec5521fc6b76aa63526f9f612 808 PRINTS PR00364 Disease resistance protein signature 144 159 5.3E-6 T 19-04-2016 AMED_5977 e8a3de0096af8ca5bdff09359769350b 268 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 164 8.9E-21 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_5977 e8a3de0096af8ca5bdff09359769350b 268 PANTHER PTHR10366:SF476 5 171 5.2E-40 T 19-04-2016 AMED_5977 e8a3de0096af8ca5bdff09359769350b 268 SUPERFAMILY SSF51735 1 221 7.32E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5977 e8a3de0096af8ca5bdff09359769350b 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 123 151 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_5977 e8a3de0096af8ca5bdff09359769350b 268 PANTHER PTHR10366 5 171 5.2E-40 T 19-04-2016 AMED_5977 e8a3de0096af8ca5bdff09359769350b 268 Gene3D G3DSA:3.40.50.720 2 221 5.7E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5069 e4161f0f2706fc3beb90dfe818d01ba6 444 PANTHER PTHR12110 43 298 5.0E-21 T 19-04-2016 AMED_5069 e4161f0f2706fc3beb90dfe818d01ba6 444 SUPERFAMILY SSF51658 55 329 1.04E-29 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5069 e4161f0f2706fc3beb90dfe818d01ba6 444 Gene3D G3DSA:3.20.20.150 60 235 2.0E-26 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5069 e4161f0f2706fc3beb90dfe818d01ba6 444 Pfam PF01261 Xylose isomerase-like TIM barrel 65 232 6.0E-19 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5069 e4161f0f2706fc3beb90dfe818d01ba6 444 PANTHER PTHR12110:SF21 43 298 5.0E-21 T 19-04-2016 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 SMART SM00342 23 106 1.1E-24 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 SUPERFAMILY SSF46689 7 56 1.03E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 SUPERFAMILY SSF46689 59 108 6.72E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 Pfam PF12833 Helix-turn-helix domain 29 107 2.1E-19 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 90 106 7.8E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 75 90 7.8E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 Gene3D G3DSA:1.10.10.60 7 60 7.6E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 Gene3D G3DSA:1.10.10.60 61 108 2.4E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6885 6ad476e05cd7816bcc46fb076dbbb81b 250 PANTHER PTHR11019 9 114 3.4E-26 T 19-04-2016 AMED_2895 971f636dac25de7e7a4fb30f1fd2e62e 316 Gene3D G3DSA:3.20.20.80 37 292 6.6E-14 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2895 971f636dac25de7e7a4fb30f1fd2e62e 316 PANTHER PTHR11177:SF203 59 290 3.4E-30 T 19-04-2016 AMED_2895 971f636dac25de7e7a4fb30f1fd2e62e 316 Pfam PF00704 Glycosyl hydrolases family 18 37 237 3.3E-11 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_2895 971f636dac25de7e7a4fb30f1fd2e62e 316 SUPERFAMILY SSF51445 36 294 2.03E-20 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2895 971f636dac25de7e7a4fb30f1fd2e62e 316 PANTHER PTHR11177 59 290 3.4E-30 T 19-04-2016 AMED_2344 b61185a95eae27683bf46d3777be74d2 175 Gene3D G3DSA:1.10.10.10 14 59 3.5E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2344 b61185a95eae27683bf46d3777be74d2 175 Gene3D G3DSA:1.10.10.10 61 104 3.2E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2344 b61185a95eae27683bf46d3777be74d2 175 Hamap MF_01114 Regulatory protein RecX [recX]. 3 162 15.184 T 19-04-2016 IPR003783 Regulatory protein RecX GO:0006282 AMED_2344 b61185a95eae27683bf46d3777be74d2 175 PANTHER PTHR33602:SF1 9 165 2.1E-30 T 19-04-2016 AMED_2344 b61185a95eae27683bf46d3777be74d2 175 PANTHER PTHR33602 9 165 2.1E-30 T 19-04-2016 AMED_2344 b61185a95eae27683bf46d3777be74d2 175 Pfam PF02631 RecX family 37 157 5.4E-27 T 19-04-2016 IPR003783 Regulatory protein RecX GO:0006282 AMED_7291 1f5b9dd7b03a66efb31d266263126ed7 370 PANTHER PTHR33375 49 148 1.5E-12 T 19-04-2016 AMED_7291 1f5b9dd7b03a66efb31d266263126ed7 370 Pfam PF02195 ParB-like nuclease domain 48 133 2.6E-10 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_7291 1f5b9dd7b03a66efb31d266263126ed7 370 PANTHER PTHR33375:SF1 49 148 1.5E-12 T 19-04-2016 AMED_7291 1f5b9dd7b03a66efb31d266263126ed7 370 SMART SM00470 31 134 1.9E-7 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_7291 1f5b9dd7b03a66efb31d266263126ed7 370 SUPERFAMILY SSF110849 47 136 5.06E-11 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_7291 1f5b9dd7b03a66efb31d266263126ed7 370 Gene3D G3DSA:3.90.1530.10 47 139 9.1E-12 T 19-04-2016 AMED_1308 66958b05168b8df7a6b1312c49da76d9 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 307 2.2E-41 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_1308 66958b05168b8df7a6b1312c49da76d9 316 PANTHER PTHR32196 3 316 1.2E-69 T 19-04-2016 AMED_1308 66958b05168b8df7a6b1312c49da76d9 316 PANTHER PTHR32196:SF21 3 316 1.2E-69 T 19-04-2016 AMED_7694 aecd1832fc39ea1b666502147eabb0b1 346 PANTHER PTHR12286 1 199 1.6E-18 T 19-04-2016 AMED_7694 aecd1832fc39ea1b666502147eabb0b1 346 Gene3D G3DSA:3.40.50.720 3 130 1.3E-15 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7694 aecd1832fc39ea1b666502147eabb0b1 346 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 92 8.8E-10 T 19-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMED_7694 aecd1832fc39ea1b666502147eabb0b1 346 SUPERFAMILY SSF51735 1 99 2.89E-16 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 Pfam PF01266 FAD dependent oxidoreductase 22 371 1.1E-47 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 26 43 - T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 SUPERFAMILY SSF51905 18 260 8.21E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 SUPERFAMILY SSF51905 334 393 8.21E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 399 522 1.9E-28 T 19-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PANTHER PTHR11985 2 546 7.6E-208 T 19-04-2016 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 Gene3D G3DSA:3.50.50.60 17 255 3.0E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 SUPERFAMILY SSF54373 249 341 1.22E-6 T 19-04-2016 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 50 62 6.0E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 44 6.0E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 365 377 6.0E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 335 341 6.0E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 21 33 6.0E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 6.0E-32 T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 PANTHER PTHR11985:SF1 2 546 7.6E-208 T 19-04-2016 AMED_4415 17786ea50ead1effa4b1510f54fb3c80 562 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 370 380 - T 19-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 Gene3D G3DSA:3.30.465.10 100 217 2.1E-21 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 PANTHER PTHR11748 23 472 1.5E-131 T 19-04-2016 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 471 2.7E-33 T 19-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 Pfam PF01565 FAD binding domain 39 176 2.1E-34 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 PANTHER PTHR11748:SF3 23 472 1.5E-131 T 19-04-2016 IPR025650 Alkyldihydroxyacetonephosphate synthase GO:0008609|GO:0008610 KEGG: 00565+2.5.1.26|UniPathway: UPA00781 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 SUPERFAMILY SSF55103 194 471 7.85E-34 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 SUPERFAMILY SSF56176 2 217 2.76E-47 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 Gene3D G3DSA:1.10.45.10 433 471 2.0E-8 T 19-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMED_8417 c6d3daa4d78c49d2ec53be2a21ebd192 472 Gene3D G3DSA:3.30.43.10 1 95 4.7E-15 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_0491 63d2d526a885d76daa3359581473e864 400 PANTHER PTHR30572 1 400 2.3E-99 T 19-04-2016 AMED_0491 63d2d526a885d76daa3359581473e864 400 Pfam PF12704 MacB-like periplasmic core domain 21 241 8.1E-35 T 19-04-2016 IPR025857 MacB-like periplasmic core domain AMED_0491 63d2d526a885d76daa3359581473e864 400 PANTHER PTHR30572:SF7 1 400 2.3E-99 T 19-04-2016 AMED_0491 63d2d526a885d76daa3359581473e864 400 Pfam PF02687 FtsX-like permease family 283 393 8.5E-18 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 SUPERFAMILY SSF51703 2 490 3.14E-153 T 19-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 Pfam PF02310 B12 binding domain 528 631 1.8E-16 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 2 494 7.0E-134 T 19-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 PANTHER PTHR23408:SF15 1 632 6.2E-293 T 19-04-2016 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 SUPERFAMILY SSF52242 504 653 7.33E-48 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 Gene3D G3DSA:3.20.20.240 2 490 2.0E-176 T 19-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 526 653 2.4E-38 T 19-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 PANTHER PTHR23408 1 632 6.2E-293 T 19-04-2016 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 Gene3D G3DSA:3.40.50.280 505 651 1.1E-50 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_7761 7c76ad3f1f60e196aba5b1028b50f5a7 659 Pfam PF01642 Methylmalonyl-CoA mutase 2 488 2.1E-127 T 19-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 AMED_2285 cf483f4c9b2fb2e10b040dbf0bf2d69e 120 Pfam PF06993 Protein of unknown function (DUF1304) 10 117 4.1E-43 T 19-04-2016 IPR009732 Protein of unknown function DUF1304 AMED_2285 cf483f4c9b2fb2e10b040dbf0bf2d69e 120 PANTHER PTHR38446 2 119 6.8E-30 T 19-04-2016 AMED_2285 cf483f4c9b2fb2e10b040dbf0bf2d69e 120 PANTHER PTHR38446:SF1 2 119 6.8E-30 T 19-04-2016 AMED_3948 30c53db7060b22d7961a73ffdc9ede06 257 SUPERFAMILY SSF109854 6 149 6.93E-20 T 19-04-2016 AMED_3948 30c53db7060b22d7961a73ffdc9ede06 257 Gene3D G3DSA:1.20.120.450 7 147 1.8E-11 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_3948 30c53db7060b22d7961a73ffdc9ede06 257 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 12 146 1.4E-13 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_3948 30c53db7060b22d7961a73ffdc9ede06 257 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 12 230 2.4E-24 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_1328 739738cdb445ee27fa570570b35b48d2 207 Gene3D G3DSA:3.40.50.150 30 198 8.0E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1328 739738cdb445ee27fa570570b35b48d2 207 Pfam PF13649 Methyltransferase domain 51 141 6.5E-17 T 19-04-2016 AMED_1328 739738cdb445ee27fa570570b35b48d2 207 SUPERFAMILY SSF53335 12 186 1.09E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1328 739738cdb445ee27fa570570b35b48d2 207 PANTHER PTHR10108 10 178 4.8E-17 T 19-04-2016 AMED_1328 739738cdb445ee27fa570570b35b48d2 207 PANTHER PTHR10108:SF705 10 178 4.8E-17 T 19-04-2016 AMED_6759 5d8f1db4087b7b7ffabc48b61ec5ca31 607 PANTHER PTHR33908 302 459 5.9E-60 T 19-04-2016 AMED_6759 5d8f1db4087b7b7ffabc48b61ec5ca31 607 PANTHER PTHR33908 12 285 5.9E-60 T 19-04-2016 AMED_6759 5d8f1db4087b7b7ffabc48b61ec5ca31 607 PANTHER PTHR33908:SF3 302 459 5.9E-60 T 19-04-2016 AMED_6759 5d8f1db4087b7b7ffabc48b61ec5ca31 607 PANTHER PTHR33908:SF3 12 285 5.9E-60 T 19-04-2016 AMED_6759 5d8f1db4087b7b7ffabc48b61ec5ca31 607 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 84 239 1.6E-33 T 19-04-2016 AMED_9149 0c7214f786d9ab64639c15f49538ee9d 187 PANTHER PTHR19278 6 184 5.2E-46 T 19-04-2016 AMED_9149 0c7214f786d9ab64639c15f49538ee9d 187 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 24 178 2.7E-34 T 19-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_9149 0c7214f786d9ab64639c15f49538ee9d 187 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 187 23.463 T 19-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 AMED_9149 0c7214f786d9ab64639c15f49538ee9d 187 SUPERFAMILY SSF53271 16 183 3.02E-31 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_9149 0c7214f786d9ab64639c15f49538ee9d 187 Pfam PF00156 Phosphoribosyl transferase domain 100 166 4.2E-10 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_9149 0c7214f786d9ab64639c15f49538ee9d 187 Gene3D G3DSA:3.40.50.2020 14 184 3.7E-45 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_3537 4f0a3e19716774e71aa4928b5eed1667 628 SUPERFAMILY SSF50939 114 422 2.28E-10 T 19-04-2016 IPR011040 Sialidases AMED_3537 4f0a3e19716774e71aa4928b5eed1667 628 SUPERFAMILY SSF50939 461 527 2.28E-10 T 19-04-2016 IPR011040 Sialidases AMED_3537 4f0a3e19716774e71aa4928b5eed1667 628 Gene3D G3DSA:2.120.10.10 121 387 9.5E-12 T 19-04-2016 IPR011040 Sialidases AMED_9008 73ac8ac0ceded310c5ef5c59c43de279 262 SMART SM00862 150 224 3.3E-28 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_9008 73ac8ac0ceded310c5ef5c59c43de279 262 Gene3D G3DSA:1.10.10.10 129 227 7.2E-37 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9008 73ac8ac0ceded310c5ef5c59c43de279 262 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 224 1.1E-28 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_9008 73ac8ac0ceded310c5ef5c59c43de279 262 SUPERFAMILY SSF46894 130 225 1.08E-29 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_9008 73ac8ac0ceded310c5ef5c59c43de279 262 PANTHER PTHR26402:SF506 37 235 1.6E-60 T 19-04-2016 AMED_9008 73ac8ac0ceded310c5ef5c59c43de279 262 PANTHER PTHR26402 37 235 1.6E-60 T 19-04-2016 AMED_9350 dc4671537aa8ba96cfbe5e4386b8c9ab 531 Gene3D G3DSA:2.60.120.260 402 511 7.1E-4 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_9350 dc4671537aa8ba96cfbe5e4386b8c9ab 531 SUPERFAMILY SSF56112 32 251 1.53E-8 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_5945 edf4fc2de793402f8179fcc7913225fa 326 SUPERFAMILY SSF69304 81 314 2.62E-14 T 19-04-2016 AMED_5945 edf4fc2de793402f8179fcc7913225fa 326 Pfam PF07676 WD40-like Beta Propeller Repeat 229 244 0.018 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_5945 edf4fc2de793402f8179fcc7913225fa 326 Gene3D G3DSA:2.120.10.60 101 234 2.3E-6 T 19-04-2016 AMED_5945 edf4fc2de793402f8179fcc7913225fa 326 Gene3D G3DSA:2.120.10.30 235 314 6.2E-13 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 Gene3D G3DSA:3.90.226.10 16 273 8.8E-78 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 SUPERFAMILY SSF52096 24 274 5.48E-77 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 SUPERFAMILY SSF52096 261 545 5.46E-90 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 PANTHER PTHR22855 17 545 0.0 T 19-04-2016 AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 Gene3D G3DSA:3.90.226.10 292 545 1.8E-99 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 PANTHER PTHR22855:SF14 17 545 0.0 T 19-04-2016 AMED_0946 25c7fab73b680904ab1cd7dcbd8339f1 545 Pfam PF01039 Carboxyl transferase domain 46 543 1.2E-202 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_8995 59ff25949cf51e8f39bfe64f4d510ad7 477 PANTHER PTHR31806 6 474 3.5E-54 T 19-04-2016 AMED_8995 59ff25949cf51e8f39bfe64f4d510ad7 477 PIRSF PIRSF002744 1 476 5.2E-106 T 19-04-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 AMED_8995 59ff25949cf51e8f39bfe64f4d510ad7 477 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 17 418 2.4E-36 T 19-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AMED_5998 bcaf79faec3ccc0cfd0451d56e75c4ff 186 Pfam PF01553 Acyltransferase 1 119 1.5E-15 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_5998 bcaf79faec3ccc0cfd0451d56e75c4ff 186 PANTHER PTHR10434 1 177 1.2E-31 T 19-04-2016 AMED_5998 bcaf79faec3ccc0cfd0451d56e75c4ff 186 Gene3D G3DSA:3.40.1130.10 4 125 2.7E-14 T 19-04-2016 AMED_5998 bcaf79faec3ccc0cfd0451d56e75c4ff 186 SUPERFAMILY SSF69593 2 175 7.72E-28 T 19-04-2016 AMED_5998 bcaf79faec3ccc0cfd0451d56e75c4ff 186 PANTHER PTHR10434:SF21 1 177 1.2E-31 T 19-04-2016 AMED_5998 bcaf79faec3ccc0cfd0451d56e75c4ff 186 SMART SM00563 13 123 1.4E-20 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 2.8E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 2.8E-8 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 SMART SM00895 112 229 4.2E-10 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1200 a0aef61f43db8031d4f12623d042e409 244 Gene3D G3DSA:1.20.120.530 106 236 4.7E-18 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1200 a0aef61f43db8031d4f12623d042e409 244 PANTHER PTHR11751 130 153 2.8E-16 T 19-04-2016 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 PANTHER PTHR11751 24 90 2.8E-16 T 19-04-2016 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 SMART SM00345 26 87 1.9E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 SUPERFAMILY SSF46785 14 91 1.4E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1200 a0aef61f43db8031d4f12623d042e409 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 82 4.7E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1200 a0aef61f43db8031d4f12623d042e409 244 Gene3D G3DSA:1.10.10.10 24 92 1.2E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1200 a0aef61f43db8031d4f12623d042e409 244 SUPERFAMILY SSF48008 108 236 1.02E-17 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_1200 a0aef61f43db8031d4f12623d042e409 244 Pfam PF07729 FCD domain 118 228 6.0E-18 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6382 f3571f0c5f543ca93d8ef5c22892f608 152 SUPERFAMILY SSF46689 25 146 7.77E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6382 f3571f0c5f543ca93d8ef5c22892f608 152 Pfam PF13565 Homeodomain-like domain 65 144 5.4E-11 T 19-04-2016 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 PANTHER PTHR30328:SF18 3 186 9.2E-32 T 19-04-2016 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 Gene3D G3DSA:1.10.357.10 61 183 2.8E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 Gene3D G3DSA:1.10.10.60 6 60 1.6E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 SUPERFAMILY SSF46689 3 76 3.39E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.4E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.4E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 6.2E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 PANTHER PTHR30328 3 186 9.2E-32 T 19-04-2016 AMED_6420 a9fb4bb4fc1e657a4e706a1d156251a4 194 SUPERFAMILY SSF48498 79 180 1.08E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5013 e87843a55919992bb263b922175dbc19 437 PANTHER PTHR11328 4 427 4.5E-54 T 19-04-2016 AMED_5013 e87843a55919992bb263b922175dbc19 437 Pfam PF13347 MFS/sugar transport protein 12 427 8.7E-74 T 19-04-2016 AMED_5013 e87843a55919992bb263b922175dbc19 437 Gene3D G3DSA:1.20.1250.20 226 432 1.8E-18 T 19-04-2016 AMED_5013 e87843a55919992bb263b922175dbc19 437 Gene3D G3DSA:1.20.1250.20 11 203 1.9E-10 T 19-04-2016 AMED_5013 e87843a55919992bb263b922175dbc19 437 SUPERFAMILY SSF103473 8 432 9.81E-35 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5013 e87843a55919992bb263b922175dbc19 437 PANTHER PTHR11328:SF24 4 427 4.5E-54 T 19-04-2016 AMED_1977 16df57fb1d6230e2cd2e32bd6341c5b5 487 Pfam PF01148 Cytidylyltransferase family 230 483 3.3E-53 T 19-04-2016 AMED_1977 16df57fb1d6230e2cd2e32bd6341c5b5 487 PANTHER PTHR13773 204 485 1.5E-70 T 19-04-2016 AMED_1977 16df57fb1d6230e2cd2e32bd6341c5b5 487 PANTHER PTHR13773:SF0 204 485 1.5E-70 T 19-04-2016 AMED_1977 16df57fb1d6230e2cd2e32bd6341c5b5 487 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 442 468 - T 19-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 AMED_0998 156997a64c6b6298a4627485cda74bfe 205 Gene3D G3DSA:3.40.50.1820 6 202 5.7E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0998 156997a64c6b6298a4627485cda74bfe 205 PANTHER PTHR17630 7 205 1.0E-26 T 19-04-2016 AMED_0998 156997a64c6b6298a4627485cda74bfe 205 PANTHER PTHR17630:SF49 7 205 1.0E-26 T 19-04-2016 AMED_0998 156997a64c6b6298a4627485cda74bfe 205 SUPERFAMILY SSF53474 126 201 1.01E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0998 156997a64c6b6298a4627485cda74bfe 205 SUPERFAMILY SSF53474 5 40 1.01E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 PANTHER PTHR30055 3 203 5.2E-23 T 19-04-2016 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 Gene3D G3DSA:1.10.10.60 11 67 2.6E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 Gene3D G3DSA:1.10.357.10 68 205 2.2E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 SUPERFAMILY SSF48498 83 199 8.36E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 149 203 6.6E-18 T 19-04-2016 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.8E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.8E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 SUPERFAMILY SSF46689 8 74 1.45E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3704 c3c336522d0b7ad3b15ebbcd81b393c3 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 3.6E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 PIRSF PIRSF000521 4 450 1.4E-23 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 PANTHER PTHR11986 7 455 2.0E-126 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 Gene3D G3DSA:3.40.640.10 75 346 2.8E-76 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 260 297 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 SUPERFAMILY SSF53383 33 448 5.76E-110 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 Pfam PF00202 Aminotransferase class-III 32 446 1.9E-91 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 Gene3D G3DSA:3.90.1150.10 348 450 2.0E-31 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_6836 f8a7e26d0b8ee1ba472795489b0e2b43 458 Gene3D G3DSA:3.90.1150.10 16 73 2.0E-31 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 Gene3D G3DSA:3.40.50.1100 106 183 3.0E-22 T 19-04-2016 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 Gene3D G3DSA:3.40.50.1100 184 399 1.7E-97 T 19-04-2016 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 385 1.4E-50 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 PIRSF PIRSF001413 1 401 1.4E-155 T 19-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 14 396 8.0E-183 T 19-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 19-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 PANTHER PTHR10314:SF3 14 393 4.0E-222 T 19-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 PANTHER PTHR10314 14 393 4.0E-222 T 19-04-2016 AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 SUPERFAMILY SSF53686 10 397 2.62E-144 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_2294 dc1d1e78e4379480a34e4247788964c4 403 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 9 398 51.003 T 19-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 PANTHER PTHR23264 7 365 2.6E-125 T 19-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 SUPERFAMILY SSF52540 119 365 2.74E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 PANTHER PTHR23264:SF19 7 365 2.6E-125 T 19-04-2016 AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 Gene3D G3DSA:3.40.50.300 113 364 3.3E-83 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 Hamap MF_02040 Iron-sulfur cluster carrier protein. 100 366 33.05 T 19-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 120 365 6.6E-87 T 19-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 SUPERFAMILY SSF117916 12 102 6.21E-23 T 19-04-2016 AMED_1071 670bbc02be0dbaff780252e743eb24f3 384 Pfam PF01883 Domain of unknown function DUF59 14 86 1.5E-17 T 19-04-2016 IPR002744 Domain of unknown function DUF59 AMED_3155 7837afdbbf3b7b1e835ebd6e2065c874 1253 Gene3D G3DSA:3.40.366.10 33 166 1.0E-18 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3155 7837afdbbf3b7b1e835ebd6e2065c874 1253 Gene3D G3DSA:3.40.366.10 270 364 1.0E-18 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_3155 7837afdbbf3b7b1e835ebd6e2065c874 1253 SUPERFAMILY SSF52151 35 172 1.54E-20 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_3155 7837afdbbf3b7b1e835ebd6e2065c874 1253 SUPERFAMILY SSF52151 272 370 1.54E-20 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_7722 560faf9deb062942479d9e93801eeb8b 195 PIRSF PIRSF016661 13 193 5.4E-39 T 19-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AMED_7722 560faf9deb062942479d9e93801eeb8b 195 Pfam PF02632 BioY family 48 186 6.8E-36 T 19-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AMED_7722 560faf9deb062942479d9e93801eeb8b 195 PANTHER PTHR34295:SF1 12 194 7.8E-55 T 19-04-2016 AMED_7722 560faf9deb062942479d9e93801eeb8b 195 PANTHER PTHR34295 12 194 7.8E-55 T 19-04-2016 AMED_2794 ee1e751970f340507f80dc39d5e2a399 160 Pfam PF13474 SnoaL-like domain 30 145 2.9E-11 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_2794 ee1e751970f340507f80dc39d5e2a399 160 SUPERFAMILY SSF54427 28 144 5.18E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_2794 ee1e751970f340507f80dc39d5e2a399 160 Gene3D G3DSA:3.10.450.50 26 146 7.1E-14 T 19-04-2016 IPR032710 NTF2-like domain AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 SMART SM00487 28 245 3.0E-35 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 SMART SM00490 336 442 2.4E-13 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031:SF122 29 215 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 Gene3D G3DSA:3.40.50.300 315 471 8.3E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 Gene3D G3DSA:3.40.50.300 18 231 3.3E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031:SF122 1037 1061 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 Pfam PF00271 Helicase conserved C-terminal domain 321 442 3.0E-13 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 Pfam PF08494 DEAD/H associated 705 898 3.2E-74 T 19-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 SMART SM00382 45 429 0.0042 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 SUPERFAMILY SSF52540 373 446 1.32E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 SUPERFAMILY SSF52540 42 218 1.32E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 SUPERFAMILY SSF52540 297 344 1.32E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 Pfam PF00270 DEAD/DEAH box helicase 33 216 9.1E-24 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031 291 348 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031:SF122 377 459 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031:SF122 479 506 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031 29 215 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031 1037 1061 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031:SF122 291 348 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031 377 459 2.6E-60 T 19-04-2016 AMED_2336 913399f603064e636b26fc0fe8cfae38 1561 PANTHER PTHR24031 479 506 2.6E-60 T 19-04-2016 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 SUPERFAMILY SSF101904 509 823 5.49E-101 T 19-04-2016 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 721 768 1.0E-10 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 564 608 2.5E-11 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 668 717 1.6E-10 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 514 561 3.7E-12 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 621 663 3.7E-10 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 771 812 1.1E-9 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 7 819 28.134 T 19-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 14 817 0.0 T 19-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:3.90.199.10 344 408 2.1E-112 T 19-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:3.90.199.10 36 245 2.1E-112 T 19-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:3.30.1360.40 246 343 2.9E-35 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 PANTHER PTHR10169:SF48 12 785 0.0 T 19-04-2016 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Gene3D G3DSA:2.120.10.90 506 816 9.4E-118 T 19-04-2016 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 SMART SM00434 17 475 1.3E-271 T 19-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 PANTHER PTHR10169 12 785 0.0 T 19-04-2016 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 SUPERFAMILY SSF56719 36 498 1.57E-170 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMED_0007 4252632d0f6e3882b71a23798b40f8de 845 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 38 482 2.8E-148 T 19-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMED_9080 b761b24a70e512749fecf48646045600 378 SUPERFAMILY SSF53955 261 364 1.49E-17 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_9080 b761b24a70e512749fecf48646045600 378 Gene3D G3DSA:1.10.287.1060 26 111 4.6E-8 T 19-04-2016 AMED_9080 b761b24a70e512749fecf48646045600 378 PANTHER PTHR21525 292 378 2.8E-25 T 19-04-2016 AMED_9080 b761b24a70e512749fecf48646045600 378 PANTHER PTHR21525:SF8 292 378 2.8E-25 T 19-04-2016 AMED_9080 b761b24a70e512749fecf48646045600 378 Pfam PF06013 Proteins of 100 residues with WXG 26 107 6.8E-11 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_9080 b761b24a70e512749fecf48646045600 378 SUPERFAMILY SSF140453 26 112 1.83E-10 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_9080 b761b24a70e512749fecf48646045600 378 Pfam PF01464 Transglycosylase SLT domain 289 362 8.6E-14 T 19-04-2016 IPR008258 Transglycosylase SLT domain 1 AMED_9080 b761b24a70e512749fecf48646045600 378 Gene3D G3DSA:1.10.530.10 266 353 3.4E-11 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PANTHER PTHR13789:SF219 5 353 1.6E-78 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 Gene3D G3DSA:3.50.50.60 109 193 3.9E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 Gene3D G3DSA:3.50.50.60 6 71 3.9E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 Gene3D G3DSA:3.50.50.60 284 362 3.9E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PANTHER PTHR13789 5 353 1.6E-78 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 Pfam PF01494 FAD binding domain 6 362 2.7E-101 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 6.1E-45 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 167 182 6.1E-45 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 327 6.1E-45 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 347 363 6.1E-45 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 347 6.1E-45 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 311 6.1E-45 T 19-04-2016 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 SUPERFAMILY SSF51905 6 188 3.76E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5441 63570acca7267c75f7b0f8174b2b622a 531 SUPERFAMILY SSF51905 283 377 3.76E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5364 e58995895a52f3e9fb6d244428706863 497 SUPERFAMILY SSF75005 48 344 6.14E-34 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_5364 e58995895a52f3e9fb6d244428706863 497 PANTHER PTHR22925:SF3 34 326 7.5E-34 T 19-04-2016 AMED_5364 e58995895a52f3e9fb6d244428706863 497 PANTHER PTHR22925 34 326 7.5E-34 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_5364 e58995895a52f3e9fb6d244428706863 497 Pfam PF04616 Glycosyl hydrolases family 43 58 271 5.3E-16 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_5364 e58995895a52f3e9fb6d244428706863 497 Gene3D G3DSA:2.115.10.20 57 298 4.7E-24 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_6067 3b8cf27fb7de03ae5499396c5901f2b4 424 SUPERFAMILY SSF53850 14 423 1.35E-77 T 19-04-2016 AMED_6067 3b8cf27fb7de03ae5499396c5901f2b4 424 Pfam PF01547 Bacterial extracellular solute-binding protein 50 339 5.7E-36 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_6067 3b8cf27fb7de03ae5499396c5901f2b4 424 PANTHER PTHR30061:SF1 7 423 8.2E-70 T 19-04-2016 AMED_6067 3b8cf27fb7de03ae5499396c5901f2b4 424 Gene3D G3DSA:3.40.190.10 33 165 8.2E-18 T 19-04-2016 AMED_6067 3b8cf27fb7de03ae5499396c5901f2b4 424 PANTHER PTHR30061 7 423 8.2E-70 T 19-04-2016 AMED_6067 3b8cf27fb7de03ae5499396c5901f2b4 424 Gene3D G3DSA:3.40.190.10 166 355 1.6E-47 T 19-04-2016 AMED_5930 0f782725b2e65c9c36ff9400ac24796d 267 PANTHER PTHR30294 8 263 2.5E-81 T 19-04-2016 AMED_5930 0f782725b2e65c9c36ff9400ac24796d 267 PANTHER PTHR30294:SF24 8 263 2.5E-81 T 19-04-2016 AMED_5930 0f782725b2e65c9c36ff9400ac24796d 267 Pfam PF01061 ABC-2 type transporter 13 221 2.9E-34 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_5930 0f782725b2e65c9c36ff9400ac24796d 267 PIRSF PIRSF006648 3 266 4.6E-72 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_1316 71511ebbb0326af452bb19090d03de32 290 SUPERFAMILY SSF56112 17 254 2.83E-31 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1316 71511ebbb0326af452bb19090d03de32 290 Pfam PF01636 Phosphotransferase enzyme family 19 247 5.1E-25 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_1316 71511ebbb0326af452bb19090d03de32 290 PANTHER PTHR21310 12 215 3.5E-17 T 19-04-2016 AMED_1316 71511ebbb0326af452bb19090d03de32 290 Gene3D G3DSA:3.90.1200.10 88 252 5.6E-19 T 19-04-2016 AMED_1316 71511ebbb0326af452bb19090d03de32 290 PANTHER PTHR21310:SF3 12 215 3.5E-17 T 19-04-2016 AMED_0643 edfe36963234429a9d0318a4a1bfe585 294 Gene3D G3DSA:3.20.20.30 6 290 2.8E-51 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0643 edfe36963234429a9d0318a4a1bfe585 294 PANTHER PTHR30011 21 171 5.5E-26 T 19-04-2016 AMED_0643 edfe36963234429a9d0318a4a1bfe585 294 TIGRFAM TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family 8 291 2.9E-101 T 19-04-2016 IPR019923 Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted AMED_0643 edfe36963234429a9d0318a4a1bfe585 294 Pfam PF00296 Luciferase-like monooxygenase 8 266 1.5E-28 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0643 edfe36963234429a9d0318a4a1bfe585 294 SUPERFAMILY SSF51679 7 291 2.49E-48 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0643 edfe36963234429a9d0318a4a1bfe585 294 PANTHER PTHR30011:SF5 21 171 5.5E-26 T 19-04-2016 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 Gene3D G3DSA:3.50.50.60 6 162 4.7E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 Gene3D G3DSA:3.50.50.60 205 299 4.7E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 Gene3D G3DSA:3.50.50.60 429 498 4.7E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 Gene3D G3DSA:3.50.50.60 379 392 4.7E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 PANTHER PTHR11552 6 45 3.7E-47 T 19-04-2016 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 PANTHER PTHR11552 84 500 3.7E-47 T 19-04-2016 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 PANTHER PTHR11552:SF133 6 45 3.7E-47 T 19-04-2016 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 PANTHER PTHR11552:SF133 84 500 3.7E-47 T 19-04-2016 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 SUPERFAMILY SSF51905 110 301 1.42E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 SUPERFAMILY SSF51905 5 46 1.42E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 SUPERFAMILY SSF51905 435 499 1.42E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 Pfam PF05199 GMC oxidoreductase 379 491 2.0E-19 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 Pfam PF00732 GMC oxidoreductase 210 297 4.6E-7 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_5392 4490c16c8c48451539accb3b6705ecb7 505 SUPERFAMILY SSF54373 259 439 3.45E-12 T 19-04-2016 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 7.9E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 7.9E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 PANTHER PTHR30055 1 179 4.6E-29 T 19-04-2016 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 Gene3D G3DSA:1.10.10.60 6 65 3.5E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 SUPERFAMILY SSF46689 5 76 3.44E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 PANTHER PTHR30055:SF54 1 179 4.6E-29 T 19-04-2016 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 61 1.8E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0139 1f30fbd70e7542832f191cbe45aae02b 196 Gene3D G3DSA:1.10.357.10 78 192 2.2E-8 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 Gene3D G3DSA:3.40.50.270 2 149 2.1E-48 T 19-04-2016 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 SUPERFAMILY SSF52788 2 149 3.79E-44 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 146 1.8E-39 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 120 135 2.0E-21 T 19-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 2.0E-21 T 19-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 79 94 2.0E-21 T 19-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 2.0E-21 T 19-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 PANTHER PTHR11717 3 147 3.4E-48 T 19-04-2016 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 PANTHER PTHR11717:SF7 3 147 3.4E-48 T 19-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMED_1169 6a2b123768aa45a6e363be4b09c2b689 153 SMART SM00226 2 148 1.0E-52 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 PANTHER PTHR12029:SF31 1 150 2.5E-60 T 19-04-2016 AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 PIRSF PIRSF029256 1 153 9.1E-59 T 19-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 PANTHER PTHR12029 1 150 2.5E-60 T 19-04-2016 AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 31.625 T 19-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 Gene3D G3DSA:3.40.1280.10 2 151 2.5E-57 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 Pfam PF00588 SpoU rRNA Methylase family 3 142 1.1E-27 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_4947 0d0eafc3750aa932e6ed3765db856380 155 SUPERFAMILY SSF75217 2 150 4.51E-40 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_8476 f67a36502155836c8d1201dd95c03c78 219 Pfam PF01126 Heme oxygenase 9 209 7.2E-49 T 19-04-2016 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 Gene3D G3DSA:1.20.910.10 4 210 7.3E-61 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PIRSF PIRSF000343 1 218 1.6E-60 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PANTHER PTHR10720 5 210 6.9E-56 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 SUPERFAMILY SSF48613 9 211 8.75E-55 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 9 34 2.4E-23 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 69 94 2.4E-23 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 121 142 2.4E-23 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 44 69 2.4E-23 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 195 213 2.4E-23 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_8476 f67a36502155836c8d1201dd95c03c78 219 PRINTS PR00088 Haem oxygenase signature 163 184 2.4E-23 T 19-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 AMED_5986 7cc5e7e9160cfe2313c7f04f1a29a65f 192 Gene3D G3DSA:2.30.110.10 12 138 5.4E-24 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5986 7cc5e7e9160cfe2313c7f04f1a29a65f 192 SUPERFAMILY SSF50475 30 155 6.55E-18 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5986 7cc5e7e9160cfe2313c7f04f1a29a65f 192 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 21 113 6.2E-15 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_5986 7cc5e7e9160cfe2313c7f04f1a29a65f 192 PANTHER PTHR30212 6 171 2.3E-44 T 19-04-2016 AMED_5986 7cc5e7e9160cfe2313c7f04f1a29a65f 192 PANTHER PTHR30212:SF4 6 171 2.3E-44 T 19-04-2016 AMED_5986 7cc5e7e9160cfe2313c7f04f1a29a65f 192 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 2 188 7.7E-69 T 19-04-2016 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 19-04-2016 IPR018038 Ribosomal protein L30, conserved site AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 2.5E-17 T 19-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 PIRSF PIRSF002211 1 60 1.1E-27 T 19-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 4.9E-23 T 19-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 PANTHER PTHR15892 1 60 2.1E-23 T 19-04-2016 AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 PANTHER PTHR15892:SF2 1 60 2.1E-23 T 19-04-2016 AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 20.263 T 19-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 SUPERFAMILY SSF55129 1 59 7.33E-21 T 19-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMED_0695 0360d639fd0ed4a3b397575a0e07c65d 61 Gene3D G3DSA:3.30.1390.20 1 59 5.2E-27 T 19-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PANTHER PTHR10353 6 438 1.5E-184 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 343 351 6.4E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 278 292 6.4E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 409 421 6.4E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 385 402 6.4E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PRINTS PR00131 Glycosyl hydrolase family 1 signature 364 375 6.4E-21 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 TIGRFAM TIGR03356 BGL: beta-galactosidase 6 431 7.5E-168 T 19-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 Gene3D G3DSA:3.20.20.80 6 437 6.4E-152 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 Pfam PF00232 Glycosyl hydrolase family 1 5 437 2.6E-143 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 19-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 SUPERFAMILY SSF51445 6 437 1.07E-155 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_0086 7dc3fc5d182704b2c5cf29fb412d37a5 438 PANTHER PTHR10353:SF36 6 438 1.5E-184 T 19-04-2016 AMED_5243 beec006b746a8efc6831fd2d3e406af8 186 Pfam PF01613 Flavin reductase like domain 15 154 3.6E-8 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_5243 beec006b746a8efc6831fd2d3e406af8 186 Gene3D G3DSA:2.30.110.10 1 159 8.9E-32 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_5243 beec006b746a8efc6831fd2d3e406af8 186 SUPERFAMILY SSF50475 11 159 7.85E-23 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 Gene3D G3DSA:3.40.220.10 21 175 6.2E-33 T 19-04-2016 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PANTHER PTHR11963 17 498 4.3E-172 T 19-04-2016 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 343 350 - T 19-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PRINTS PR00481 Cytosol aminopeptidase signature 280 301 1.0E-46 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PRINTS PR00481 Cytosol aminopeptidase signature 339 359 1.0E-46 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PRINTS PR00481 Cytosol aminopeptidase signature 367 382 1.0E-46 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PRINTS PR00481 Cytosol aminopeptidase signature 258 275 1.0E-46 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PRINTS PR00481 Cytosol aminopeptidase signature 317 338 1.0E-46 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 SUPERFAMILY SSF53187 177 494 4.39E-105 T 19-04-2016 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 PANTHER PTHR11963:SF13 17 498 4.3E-172 T 19-04-2016 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 183 488 5.4E-109 T 19-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 Gene3D G3DSA:3.40.630.10 176 495 1.2E-123 T 19-04-2016 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 SUPERFAMILY SSF52949 22 162 7.65E-27 T 19-04-2016 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 29 146 7.0E-24 T 19-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMED_2175 b757b5621271c5da01a43f8eb8768cef 499 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 9 497 33.569 T 19-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMED_9296 79b39513e92abac784df8ddff234f918 101 ProSitePatterns PS01048 Ribosomal protein S6 signature. 38 47 - T 19-04-2016 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_9296 79b39513e92abac784df8ddff234f918 101 Gene3D G3DSA:3.30.70.60 1 89 8.8E-28 T 19-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMED_9296 79b39513e92abac784df8ddff234f918 101 PANTHER PTHR21011 1 97 9.9E-23 T 19-04-2016 AMED_9296 79b39513e92abac784df8ddff234f918 101 SUPERFAMILY SSF54995 1 88 4.71E-26 T 19-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_9296 79b39513e92abac784df8ddff234f918 101 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 89 15.281 T 19-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_9296 79b39513e92abac784df8ddff234f918 101 Pfam PF01250 Ribosomal protein S6 1 86 6.3E-24 T 19-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_9296 79b39513e92abac784df8ddff234f918 101 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 88 7.5E-21 T 19-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMED_7125 3b6b839622975edebef684d5875f9edf 254 PANTHER PTHR11941 11 254 4.4E-72 T 19-04-2016 AMED_7125 3b6b839622975edebef684d5875f9edf 254 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_7125 3b6b839622975edebef684d5875f9edf 254 PANTHER PTHR11941:SF93 11 254 4.4E-72 T 19-04-2016 AMED_7125 3b6b839622975edebef684d5875f9edf 254 Gene3D G3DSA:1.10.12.10 199 246 7.6E-10 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_7125 3b6b839622975edebef684d5875f9edf 254 SUPERFAMILY SSF52096 9 251 3.78E-65 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7125 3b6b839622975edebef684d5875f9edf 254 Gene3D G3DSA:3.90.226.10 11 198 8.3E-58 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7125 3b6b839622975edebef684d5875f9edf 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 249 8.8E-52 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 Pfam PF04542 Sigma-70 region 2 35 103 8.7E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 SUPERFAMILY SSF88946 15 105 2.08E-21 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 Gene3D G3DSA:1.10.1740.10 15 123 8.4E-25 T 19-04-2016 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 Pfam PF08281 Sigma-70, region 4 136 187 5.2E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 PANTHER PTHR30173 6 196 4.3E-39 T 19-04-2016 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 SUPERFAMILY SSF88659 127 192 7.66E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 PANTHER PTHR30173:SF6 6 196 4.3E-39 T 19-04-2016 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 189 4.7E-21 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3660 583be74cc0d8866baf767887f6dcbd07 204 Gene3D G3DSA:1.10.10.10 128 193 1.5E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:2.40.50.140 285 331 8.4E-9 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:2.40.50.100 240 284 7.3E-10 T 19-04-2016 AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:2.40.50.100 375 389 7.3E-10 T 19-04-2016 AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 PANTHER PTHR24220 5 288 7.9E-154 T 19-04-2016 AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 Pfam PF00005 ABC transporter 21 162 4.1E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 Gene3D G3DSA:3.40.50.300 4 235 4.3E-75 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 PANTHER PTHR24220:SF151 5 288 7.9E-154 T 19-04-2016 AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 SUPERFAMILY SSF52540 4 244 1.46E-82 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 SUPERFAMILY SSF50331 237 389 2.72E-19 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_1083 7b23e2e3ec7043a5926b14fec949a652 393 SMART SM00382 29 220 2.2E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2250 41b79725163b338198e21a9cafab4f35 264 PANTHER PTHR23088 2 263 1.5E-65 T 19-04-2016 AMED_2250 41b79725163b338198e21a9cafab4f35 264 PANTHER PTHR23088:SF27 2 263 1.5E-65 T 19-04-2016 AMED_2250 41b79725163b338198e21a9cafab4f35 264 SUPERFAMILY SSF56317 3 261 8.63E-64 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_2250 41b79725163b338198e21a9cafab4f35 264 Pfam PF00795 Carbon-nitrogen hydrolase 3 251 6.9E-37 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_2250 41b79725163b338198e21a9cafab4f35 264 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 139 159 - T 19-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site AMED_2250 41b79725163b338198e21a9cafab4f35 264 Gene3D G3DSA:3.60.110.10 3 263 3.3E-66 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_4687 22985d1067b5dd1a0c466915c1439ddf 160 Gene3D G3DSA:3.40.50.1820 4 57 2.5E-9 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4687 22985d1067b5dd1a0c466915c1439ddf 160 Gene3D G3DSA:3.40.50.1820 60 153 1.3E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4687 22985d1067b5dd1a0c466915c1439ddf 160 SUPERFAMILY SSF53474 15 153 5.48E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8967 bba645a0fb4249ac234c6041f8f6577c 207 PANTHER PTHR38011 2 196 2.8E-62 T 19-04-2016 AMED_8967 bba645a0fb4249ac234c6041f8f6577c 207 Pfam PF01872 RibD C-terminal domain 4 186 6.1E-27 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_8967 bba645a0fb4249ac234c6041f8f6577c 207 SUPERFAMILY SSF53597 4 190 4.19E-29 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_8967 bba645a0fb4249ac234c6041f8f6577c 207 Gene3D G3DSA:3.40.430.10 4 185 3.8E-27 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_8967 bba645a0fb4249ac234c6041f8f6577c 207 PANTHER PTHR38011:SF2 2 196 2.8E-62 T 19-04-2016 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 SUPERFAMILY SSF48179 158 281 4.08E-32 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 Gene3D G3DSA:1.10.1040.10 158 284 1.8E-35 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 PIRSF PIRSF000103 1 285 1.1E-68 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 153 6.9E-31 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 159 279 1.4E-29 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 PANTHER PTHR22981 1 284 5.0E-78 T 19-04-2016 AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 Gene3D G3DSA:3.40.50.720 1 156 7.5E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3839 b1bacacd461a26d305d5d19c409a3a38 285 SUPERFAMILY SSF51735 1 156 4.22E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8899 4a08e50153eb169728be2b32abdf248f 331 PANTHER PTHR24220:SF535 5 306 8.6E-143 T 19-04-2016 AMED_8899 4a08e50153eb169728be2b32abdf248f 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 299 1.1E-17 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8899 4a08e50153eb169728be2b32abdf248f 331 SUPERFAMILY SSF52540 33 312 4.5E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8899 4a08e50153eb169728be2b32abdf248f 331 PANTHER PTHR24220 5 306 8.6E-143 T 19-04-2016 AMED_8899 4a08e50153eb169728be2b32abdf248f 331 Pfam PF00005 ABC transporter 25 182 3.4E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8899 4a08e50153eb169728be2b32abdf248f 331 SMART SM00382 33 231 5.0E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8899 4a08e50153eb169728be2b32abdf248f 331 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8899 4a08e50153eb169728be2b32abdf248f 331 Gene3D G3DSA:3.40.50.300 2 256 5.8E-73 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8899 4a08e50153eb169728be2b32abdf248f 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 317 4.6E-21 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 Pfam PF01047 MarR family 42 97 1.6E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 SUPERFAMILY SSF46785 14 147 1.52E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4641 2533329a69fb65b49c3db7465130d79b 150 PANTHER PTHR33164 16 147 8.3E-23 T 19-04-2016 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 1.4E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 123 143 1.4E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 1.4E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 1.4E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4641 2533329a69fb65b49c3db7465130d79b 150 Gene3D G3DSA:1.10.10.10 15 148 2.0E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4641 2533329a69fb65b49c3db7465130d79b 150 SMART SM00347 33 133 9.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7235 5abea87936fcf8e13e634c7bc8ffd592 204 PANTHER PTHR24096:SF193 1 182 1.9E-61 T 19-04-2016 AMED_7235 5abea87936fcf8e13e634c7bc8ffd592 204 Gene3D G3DSA:3.30.300.30 46 169 1.1E-4 T 19-04-2016 AMED_7235 5abea87936fcf8e13e634c7bc8ffd592 204 Pfam PF00501 AMP-binding enzyme 1 48 4.2E-15 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7235 5abea87936fcf8e13e634c7bc8ffd592 204 PANTHER PTHR24096 1 182 1.9E-61 T 19-04-2016 AMED_7235 5abea87936fcf8e13e634c7bc8ffd592 204 Gene3D G3DSA:2.30.38.10 1 42 4.3E-13 T 19-04-2016 AMED_7235 5abea87936fcf8e13e634c7bc8ffd592 204 SUPERFAMILY SSF56801 1 178 3.01E-32 T 19-04-2016 AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 SUPERFAMILY SSF53474 124 301 2.44E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 PANTHER PTHR11731:SF134 24 295 1.7E-58 T 19-04-2016 AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 PANTHER PTHR11731 24 295 1.7E-58 T 19-04-2016 AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 SUPERFAMILY SSF53474 22 121 6.84E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 Pfam PF10503 Esterase PHB depolymerase 40 178 9.0E-23 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 39 254 8.5E-47 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_4051 723a4f9cde34dd2201abb07f7e53681a 303 Gene3D G3DSA:3.40.50.1820 6 299 2.4E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6947 a2b0696de951240272bfab2f99c82efd 221 PANTHER PTHR30055 3 184 3.1E-18 T 19-04-2016 AMED_6947 a2b0696de951240272bfab2f99c82efd 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 2.9E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6947 a2b0696de951240272bfab2f99c82efd 221 SUPERFAMILY SSF46689 7 80 2.57E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6947 a2b0696de951240272bfab2f99c82efd 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 4.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6947 a2b0696de951240272bfab2f99c82efd 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 4.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6947 a2b0696de951240272bfab2f99c82efd 221 Gene3D G3DSA:1.10.357.10 1 180 2.4E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 PANTHER PTHR11695 15 297 3.2E-49 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 Gene3D G3DSA:3.40.50.720 138 216 3.4E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 Gene3D G3DSA:3.90.180.10 1 137 7.5E-31 T 19-04-2016 IPR011032 GroES-like AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 SUPERFAMILY SSF50129 1 142 3.96E-28 T 19-04-2016 IPR011032 GroES-like AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 SUPERFAMILY SSF51735 106 292 3.82E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 Pfam PF13602 Zinc-binding dehydrogenase 191 293 2.3E-8 T 19-04-2016 AMED_3597 05ed31d3705556ba4eeb3f5514c746cc 299 SMART SM00829 10 293 4.2E-11 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 PIRSF PIRSF000412 2 417 2.2E-154 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 Gene3D G3DSA:3.40.640.10 38 285 1.4E-104 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 223 239 - T 19-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 PANTHER PTHR11680 1 420 3.3E-232 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 Pfam PF00464 Serine hydroxymethyltransferase 9 387 1.2E-159 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 SUPERFAMILY SSF53383 4 415 5.44E-170 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 8 415 50.246 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_7554 89437f62408bd52b445f13e2b234e1e4 420 Gene3D G3DSA:3.90.1150.10 286 416 2.8E-46 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 SUPERFAMILY SSF53850 89 320 2.48E-25 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 SUPERFAMILY SSF46785 2 111 1.01E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 PANTHER PTHR30346 1 254 3.2E-72 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 Gene3D G3DSA:3.40.190.10 179 253 4.5E-22 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 Gene3D G3DSA:3.40.190.10 90 178 1.0E-10 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.8E-18 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 PANTHER PTHR30346:SF2 1 254 3.2E-72 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 PANTHER PTHR30346:SF2 274 322 3.2E-72 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 Pfam PF03466 LysR substrate binding domain 87 252 2.0E-26 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 PANTHER PTHR30346 274 322 3.2E-72 T 19-04-2016 AMED_8892 d74cd7ab14f020ed67738f40f66cebce 322 Gene3D G3DSA:1.10.10.10 2 86 1.6E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9134 3982eb7310737a9b87867b8238652cb9 211 SUPERFAMILY SSF52540 18 205 3.38E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9134 3982eb7310737a9b87867b8238652cb9 211 PANTHER PTHR10285 19 202 2.8E-50 T 19-04-2016 AMED_9134 3982eb7310737a9b87867b8238652cb9 211 Gene3D G3DSA:3.40.50.300 9 203 3.0E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9134 3982eb7310737a9b87867b8238652cb9 211 PANTHER PTHR10285:SF81 19 202 2.8E-50 T 19-04-2016 AMED_6906 d5e1a154e949e742005e07a1528770db 284 Gene3D G3DSA:2.60.120.620 34 249 2.5E-4 T 19-04-2016 AMED_6906 d5e1a154e949e742005e07a1528770db 284 SUPERFAMILY SSF51197 34 250 3.57E-9 T 19-04-2016 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 SUPERFAMILY SSF103473 7 412 4.97E-57 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 Gene3D G3DSA:1.20.1250.20 238 415 4.7E-16 T 19-04-2016 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 Gene3D G3DSA:1.20.1250.20 9 209 9.2E-23 T 19-04-2016 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 ProSitePatterns PS00216 Sugar transport proteins signature 1. 284 300 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 PANTHER PTHR23508:SF19 1 420 2.5E-198 T 19-04-2016 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 Pfam PF07690 Major Facilitator Superfamily 237 407 2.1E-9 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 Pfam PF00083 Sugar (and other) transporter 10 210 7.0E-19 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_4358 7270017e7a1f78c8b4412a68c145225b 433 PANTHER PTHR23508 1 420 2.5E-198 T 19-04-2016 AMED_5203 26b074fe6829fc9a407a6d2272964efb 287 PANTHER PTHR10459 116 272 1.4E-23 T 19-04-2016 AMED_5203 26b074fe6829fc9a407a6d2272964efb 287 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 1 246 1.4E-78 T 19-04-2016 IPR014145 DNA ligase D, polymerase domain AMED_5203 26b074fe6829fc9a407a6d2272964efb 287 PANTHER PTHR10459:SF44 116 272 1.4E-23 T 19-04-2016 AMED_5539 a427901ce306be890e8c798c8e2abad2 304 Pfam PF00535 Glycosyl transferase family 2 8 137 1.4E-25 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_5539 a427901ce306be890e8c798c8e2abad2 304 Gene3D G3DSA:3.90.550.10 6 262 7.4E-47 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5539 a427901ce306be890e8c798c8e2abad2 304 SUPERFAMILY SSF53448 5 246 1.55E-49 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5539 a427901ce306be890e8c798c8e2abad2 304 Pfam PF02709 N-terminal domain of galactosyltransferase 180 229 2.2E-5 T 19-04-2016 IPR027791 Galactosyltransferase, C-terminal UniPathway: UPA00378 AMED_5539 a427901ce306be890e8c798c8e2abad2 304 PANTHER PTHR22916 1 146 6.9E-42 T 19-04-2016 AMED_5539 a427901ce306be890e8c798c8e2abad2 304 PANTHER PTHR22916 176 286 6.9E-42 T 19-04-2016 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Gene3D G3DSA:3.20.20.80 89 419 1.4E-77 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Gene3D G3DSA:3.20.20.80 462 496 1.4E-77 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Pfam PF00128 Alpha amylase, catalytic domain 105 189 7.1E-12 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Gene3D G3DSA:2.60.40.10 1 72 8.2E-23 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PIRSF PIRSF006337 1 566 1.3E-221 T 19-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 SUPERFAMILY SSF51445 69 496 2.48E-108 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 SUPERFAMILY SSF81296 2 73 2.2E-14 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 Pfam PF11941 Domain of unknown function (DUF3459) 482 565 1.7E-16 T 19-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PANTHER PTHR10357:SF110 1 294 2.8E-101 T 19-04-2016 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PANTHER PTHR10357:SF110 315 447 2.8E-101 T 19-04-2016 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PANTHER PTHR10357:SF110 475 530 2.8E-101 T 19-04-2016 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PANTHER PTHR10357 1 294 2.8E-101 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PANTHER PTHR10357 315 447 2.8E-101 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 PANTHER PTHR10357 475 530 2.8E-101 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 SMART SM00642 94 440 2.6E-9 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2594 198c3651ba59cf3a0370eaa6d4a4eb9b 570 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 1 535 1.4E-222 T 19-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 Pfam PF03841 L-seryl-tRNA selenium transferase 71 411 1.6E-100 T 19-04-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 427 178.169 T 19-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 PANTHER PTHR32328:SF0 1 425 5.3E-117 T 19-04-2016 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 6 424 3.9E-128 T 19-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 SUPERFAMILY SSF53383 67 422 4.94E-35 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 PANTHER PTHR32328 1 425 5.3E-117 T 19-04-2016 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 Pfam PF12390 Selenocysteine synthase N terminal 5 44 3.5E-10 T 19-04-2016 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 AMED_5117 103e5c0dee467d5e0dfc7b86e10fb49f 427 Gene3D G3DSA:3.40.640.10 69 303 1.5E-25 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0984 c5a380bbfa174d35d9f017820744611b 282 Gene3D G3DSA:3.40.50.720 2 211 1.3E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0984 c5a380bbfa174d35d9f017820744611b 282 PANTHER PTHR14194 1 278 3.0E-56 T 19-04-2016 AMED_0984 c5a380bbfa174d35d9f017820744611b 282 SUPERFAMILY SSF51735 2 234 1.63E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0984 c5a380bbfa174d35d9f017820744611b 282 Pfam PF13460 NAD(P)H-binding 6 176 2.6E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4908 64fc9f62017633bec079a77877c24e17 267 PANTHER PTHR14136 174 244 2.3E-14 T 19-04-2016 AMED_4908 64fc9f62017633bec079a77877c24e17 267 Pfam PF00805 Pentapeptide repeats (8 copies) 196 232 1.3E-10 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_4908 64fc9f62017633bec079a77877c24e17 267 SUPERFAMILY SSF141571 176 250 1.96E-19 T 19-04-2016 AMED_2355 a011fbe426697abd96d9d6e8332d65d0 61 Pfam PF04149 Domain of unknown function (DUF397) 7 61 1.4E-17 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_0247 772a4fc79c902a43560e8f55da1571d6 272 PANTHER PTHR14226 76 212 3.8E-20 T 19-04-2016 AMED_0247 772a4fc79c902a43560e8f55da1571d6 272 PANTHER PTHR14226 1 59 3.8E-20 T 19-04-2016 AMED_0247 772a4fc79c902a43560e8f55da1571d6 272 SUPERFAMILY SSF52151 1 203 4.19E-29 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_0247 772a4fc79c902a43560e8f55da1571d6 272 Gene3D G3DSA:3.40.1090.10 2 185 1.9E-10 T 19-04-2016 AMED_0247 772a4fc79c902a43560e8f55da1571d6 272 Pfam PF01734 Patatin-like phospholipase 1 190 7.2E-14 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMED_0094 d83cd7c04a89a282353262a251a2e3e7 255 Pfam PF07987 Domain of unkown function (DUF1775) 30 181 1.8E-44 T 19-04-2016 IPR012533 GLE1, N-terminal, bacteria AMED_1770 fa221365bcf8e0a4a14a6460031dd64c 298 PANTHER PTHR22870 45 262 6.9E-27 T 19-04-2016 AMED_1770 fa221365bcf8e0a4a14a6460031dd64c 298 Gene3D G3DSA:2.130.10.30 24 265 4.0E-50 T 19-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II AMED_1770 fa221365bcf8e0a4a14a6460031dd64c 298 SUPERFAMILY SSF50985 24 268 3.49E-40 T 19-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II AMED_1770 fa221365bcf8e0a4a14a6460031dd64c 298 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 198 226 1.2E-7 T 19-04-2016 AMED_1770 fa221365bcf8e0a4a14a6460031dd64c 298 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 159 187 6.7E-6 T 19-04-2016 AMED_8984 b76b9089a35684ec92334908b1889a54 129 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 10 83 2.6E-14 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8984 b76b9089a35684ec92334908b1889a54 129 TIGRFAM TIGR03667 Rv3369: PPOX class probable F420-dependent enzyme, Rv3369 family 10 125 2.8E-40 T 19-04-2016 IPR019966 F420-dependent enzyme, PPOX class, family Rv3369, probable AMED_8984 b76b9089a35684ec92334908b1889a54 129 SUPERFAMILY SSF50475 11 127 1.39E-21 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8984 b76b9089a35684ec92334908b1889a54 129 Gene3D G3DSA:2.30.110.10 12 128 1.3E-22 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2572 44a7ac90422957373bf38e20f6bb496c 104 Pfam PF11298 Protein of unknown function (DUF3099) 12 80 6.7E-31 T 19-04-2016 IPR021449 Protein of unknown function DUF3099 AMED_2543 4d3f7176f2eef4f622146ba4f460dbc3 468 PANTHER PTHR32208:SF28 312 461 6.5E-24 T 19-04-2016 AMED_2543 4d3f7176f2eef4f622146ba4f460dbc3 468 PANTHER PTHR32208 312 461 6.5E-24 T 19-04-2016 AMED_2543 4d3f7176f2eef4f622146ba4f460dbc3 468 Pfam PF09362 Domain of unknown function (DUF1996) 311 446 7.5E-20 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 3.3E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 3.3E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 3.3E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 SUPERFAMILY SSF51735 15 259 1.64E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 255 5.8E-55 T 19-04-2016 AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PANTHER PTHR24322 19 149 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PANTHER PTHR24322 165 201 6.2E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 Gene3D G3DSA:3.40.50.720 15 260 4.0E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.1E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 1.1E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.1E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.1E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 1.1E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4261 0413bcd9aeef1a8741c46c98b126548b 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.1E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3309 f4efb40c1d4229ab1132a6504bad54f3 161 Gene3D G3DSA:3.30.450.30 24 146 2.1E-24 T 19-04-2016 AMED_3309 f4efb40c1d4229ab1132a6504bad54f3 161 SUPERFAMILY SSF103196 25 150 3.66E-31 T 19-04-2016 AMED_3309 f4efb40c1d4229ab1132a6504bad54f3 161 PANTHER PTHR36222 21 153 1.1E-43 T 19-04-2016 AMED_3309 f4efb40c1d4229ab1132a6504bad54f3 161 SMART SM00960 33 123 4.0E-26 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_3309 f4efb40c1d4229ab1132a6504bad54f3 161 Pfam PF03259 Roadblock/LC7 domain 33 123 1.3E-20 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 184 3.5E-14 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 Gene3D G3DSA:1.10.10.10 134 186 5.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 SUPERFAMILY SSF88946 36 119 1.02E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 PANTHER PTHR30173 37 183 1.9E-19 T 19-04-2016 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 SUPERFAMILY SSF88659 130 183 3.55E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 PANTHER PTHR30173:SF13 37 183 1.9E-19 T 19-04-2016 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 Pfam PF08281 Sigma-70, region 4 135 182 1.8E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 Gene3D G3DSA:1.10.1740.10 34 104 6.3E-11 T 19-04-2016 AMED_3760 a629e54cc91379cb78202be04b4b1f77 193 Pfam PF04542 Sigma-70 region 2 40 103 8.4E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2016 828cdff832934dcfaa496e9a6bfdc683 74 PANTHER PTHR10245:SF26 9 72 1.6E-19 T 19-04-2016 AMED_2016 828cdff832934dcfaa496e9a6bfdc683 74 Gene3D G3DSA:1.10.260.40 8 71 1.8E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2016 828cdff832934dcfaa496e9a6bfdc683 74 PANTHER PTHR10245 9 72 1.6E-19 T 19-04-2016 AMED_2016 828cdff832934dcfaa496e9a6bfdc683 74 SUPERFAMILY SSF47413 7 72 1.35E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2016 828cdff832934dcfaa496e9a6bfdc683 74 Pfam PF01381 Helix-turn-helix 21 66 7.5E-15 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2016 828cdff832934dcfaa496e9a6bfdc683 74 SMART SM00530 10 66 2.4E-13 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5070 46826d6aa8bd36ecdc5a42041c8bfc73 346 SUPERFAMILY SSF51658 60 310 3.59E-31 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5070 46826d6aa8bd36ecdc5a42041c8bfc73 346 Pfam PF01261 Xylose isomerase-like TIM barrel 70 237 1.7E-18 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5070 46826d6aa8bd36ecdc5a42041c8bfc73 346 PANTHER PTHR12110 62 303 1.3E-25 T 19-04-2016 AMED_5070 46826d6aa8bd36ecdc5a42041c8bfc73 346 Gene3D G3DSA:3.20.20.150 63 308 8.4E-30 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_3871 2795bf87788958b2c391e669cdaca511 383 Gene3D G3DSA:1.10.540.10 2 119 5.6E-25 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3871 2795bf87788958b2c391e669cdaca511 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 108 1.4E-20 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3871 2795bf87788958b2c391e669cdaca511 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 218 2.7E-18 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3871 2795bf87788958b2c391e669cdaca511 383 PANTHER PTHR10909 1 378 5.1E-100 T 19-04-2016 AMED_3871 2795bf87788958b2c391e669cdaca511 383 Gene3D G3DSA:1.20.140.10 219 378 6.7E-53 T 19-04-2016 AMED_3871 2795bf87788958b2c391e669cdaca511 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 378 1.3E-40 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3871 2795bf87788958b2c391e669cdaca511 383 Gene3D G3DSA:2.40.110.10 122 218 2.8E-29 T 19-04-2016 AMED_3871 2795bf87788958b2c391e669cdaca511 383 SUPERFAMILY SSF47203 229 378 1.93E-41 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3871 2795bf87788958b2c391e669cdaca511 383 SUPERFAMILY SSF56645 2 240 1.7E-60 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3871 2795bf87788958b2c391e669cdaca511 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 19-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 201 6.3E-11 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 PANTHER PTHR10909 10 374 5.5E-99 T 19-04-2016 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 371 2.3E-28 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 PANTHER PTHR10909:SF302 10 374 5.5E-99 T 19-04-2016 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 124 2.1E-20 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 Gene3D G3DSA:1.20.140.10 219 374 1.0E-36 T 19-04-2016 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 SUPERFAMILY SSF56645 10 227 2.62E-44 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 Gene3D G3DSA:1.10.540.10 10 126 1.1E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 Gene3D G3DSA:2.40.110.10 128 218 3.4E-15 T 19-04-2016 AMED_3864 e8399976a307ff05c0df7bcdb8999600 379 SUPERFAMILY SSF47203 230 376 3.54E-37 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 SUPERFAMILY SSF55021 81 161 1.65E-25 T 19-04-2016 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 Pfam PF10369 Small subunit of acetolactate synthase 85 158 2.4E-27 T 19-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 4 74 2.0E-31 T 19-04-2016 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 4 158 5.4E-63 T 19-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 SUPERFAMILY SSF55021 4 76 9.6E-24 T 19-04-2016 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 Pfam PF01842 ACT domain 4 69 1.3E-17 T 19-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 PANTHER PTHR30239 4 164 8.0E-89 T 19-04-2016 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 Gene3D G3DSA:3.30.70.1150 84 163 5.0E-30 T 19-04-2016 AMED_1686 5ededab2ef22da9da5b32a793448a4e8 168 Gene3D G3DSA:3.30.70.260 1 79 1.4E-36 T 19-04-2016 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 SMART SM00357 3 67 1.0E-28 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 SUPERFAMILY SSF50249 1 66 3.21E-25 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 19-04-2016 IPR019844 Cold-shock conserved site AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PANTHER PTHR11544 1 67 1.6E-34 T 19-04-2016 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 Gene3D G3DSA:2.40.50.140 1 66 3.5E-31 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PIRSF PIRSF002599 1 67 4.5E-25 T 19-04-2016 IPR012156 Cold shock, CspA GO:0003676 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.9E-30 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PRINTS PR00050 Cold shock protein signature 4 19 4.9E-18 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PRINTS PR00050 Cold shock protein signature 25 34 4.9E-18 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_4517 63a26e2f666a6c0b6ba5bb9da94e6b31 67 PRINTS PR00050 Cold shock protein signature 40 58 4.9E-18 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_1981 74e6c63fcaf3c04227163b003a26c041 178 SUPERFAMILY SSF81345 12 173 7.72E-47 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_1981 74e6c63fcaf3c04227163b003a26c041 178 PANTHER PTHR30472:SF31 13 178 2.7E-79 T 19-04-2016 AMED_1981 74e6c63fcaf3c04227163b003a26c041 178 PANTHER PTHR30472 13 178 2.7E-79 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_1981 74e6c63fcaf3c04227163b003a26c041 178 Gene3D G3DSA:1.10.3470.10 11 174 8.3E-58 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_1981 74e6c63fcaf3c04227163b003a26c041 178 Pfam PF01032 FecCD transport family 11 172 7.1E-51 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_2852 d76515bf4b4d7236173e8e132c3edbee 209 SUPERFAMILY SSF46689 17 80 4.89E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2852 d76515bf4b4d7236173e8e132c3edbee 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 57 9.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2852 d76515bf4b4d7236173e8e132c3edbee 209 PANTHER PTHR30055 12 208 3.4E-12 T 19-04-2016 AMED_2852 d76515bf4b4d7236173e8e132c3edbee 209 Gene3D G3DSA:1.10.357.10 17 196 2.3E-17 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SUPERFAMILY SSF52172 2 179 7.54E-16 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PANTHER PTHR26402:SF582 1 209 1.1E-87 T 19-04-2016 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Gene3D G3DSA:1.10.10.10 150 214 4.0E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SUPERFAMILY SSF46894 132 204 1.29E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 3.7E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 3.7E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 3.7E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 PANTHER PTHR26402 1 209 1.1E-87 T 19-04-2016 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SMART SM00421 148 210 1.6E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 SMART SM00448 1 120 1.7E-6 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 196 1.8E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Gene3D G3DSA:3.40.50.2300 2 149 2.9E-22 T 19-04-2016 AMED_4025 e92a0dc24e79e46f9ef1c0dbb8d5ad86 214 Pfam PF00072 Response regulator receiver domain 3 108 7.4E-11 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0855 d58e29b858b3443516150ce519753f1a 380 Pfam PF02608 Basic membrane protein 76 347 2.8E-48 T 19-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 AMED_0855 d58e29b858b3443516150ce519753f1a 380 PANTHER PTHR34296:SF2 1 379 1.2E-99 T 19-04-2016 AMED_0855 d58e29b858b3443516150ce519753f1a 380 Gene3D G3DSA:3.40.50.2300 179 347 1.3E-44 T 19-04-2016 AMED_0855 d58e29b858b3443516150ce519753f1a 380 PANTHER PTHR34296 1 379 1.2E-99 T 19-04-2016 AMED_0855 d58e29b858b3443516150ce519753f1a 380 SUPERFAMILY SSF53822 86 292 4.63E-7 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_0759 479bcd7d949a9c067e76dd76b2a0c1cb 354 PANTHER PTHR10361:SF31 1 348 1.4E-157 T 19-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMED_0759 479bcd7d949a9c067e76dd76b2a0c1cb 354 PIRSF PIRSF005508 1 353 2.2E-134 T 19-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMED_0759 479bcd7d949a9c067e76dd76b2a0c1cb 354 Pfam PF01758 Sodium Bile acid symporter family 54 250 9.9E-59 T 19-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMED_0759 479bcd7d949a9c067e76dd76b2a0c1cb 354 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 9 337 1.6E-130 T 19-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 AMED_0759 479bcd7d949a9c067e76dd76b2a0c1cb 354 PANTHER PTHR10361 1 348 1.4E-157 T 19-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AMED_2709 a3aa325ec2ed67a234f80a3acde1e368 125 PANTHER PTHR35908:SF2 3 121 4.4E-36 T 19-04-2016 AMED_2709 a3aa325ec2ed67a234f80a3acde1e368 125 SUPERFAMILY SSF54593 8 121 5.64E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2709 a3aa325ec2ed67a234f80a3acde1e368 125 PANTHER PTHR35908 3 121 4.4E-36 T 19-04-2016 AMED_2709 a3aa325ec2ed67a234f80a3acde1e368 125 Gene3D G3DSA:3.10.180.10 7 122 3.8E-13 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0678 312c582b4837a92e1c755434fd0e4899 229 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 208 32.68 T 19-04-2016 IPR013005 50S ribosomal protein uL4 AMED_0678 312c582b4837a92e1c755434fd0e4899 229 PANTHER PTHR10746 10 199 3.8E-76 T 19-04-2016 IPR013005 50S ribosomal protein uL4 AMED_0678 312c582b4837a92e1c755434fd0e4899 229 SUPERFAMILY SSF52166 1 204 2.35E-73 T 19-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AMED_0678 312c582b4837a92e1c755434fd0e4899 229 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 202 6.2E-71 T 19-04-2016 IPR013005 50S ribosomal protein uL4 AMED_0678 312c582b4837a92e1c755434fd0e4899 229 Gene3D G3DSA:3.40.1370.10 58 203 2.4E-52 T 19-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AMED_0678 312c582b4837a92e1c755434fd0e4899 229 Pfam PF00573 Ribosomal protein L4/L1 family 17 203 1.4E-62 T 19-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMED_5186 96ceffb8c6e90faa8581687374f91670 331 PANTHER PTHR11732 14 329 9.0E-173 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_5186 96ceffb8c6e90faa8581687374f91670 331 Pfam PF00248 Aldo/keto reductase family 29 328 1.6E-66 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5186 96ceffb8c6e90faa8581687374f91670 331 PANTHER PTHR11732:SF191 14 329 9.0E-173 T 19-04-2016 AMED_5186 96ceffb8c6e90faa8581687374f91670 331 Gene3D G3DSA:3.20.20.100 14 329 3.8E-87 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5186 96ceffb8c6e90faa8581687374f91670 331 SUPERFAMILY SSF51430 14 328 4.98E-91 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 SMART SM00020 45 264 6.8E-70 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 73 88 4.7E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 129 143 4.7E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 218 230 4.7E-9 T 19-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 Gene3D G3DSA:2.40.10.10 46 80 5.3E-12 T 19-04-2016 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 Pfam PF00089 Trypsin 46 262 6.9E-54 T 19-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 Gene3D G3DSA:2.40.10.10 81 267 1.1E-51 T 19-04-2016 AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 219 230 - T 19-04-2016 IPR033116 Serine proteases, trypsin family, serine active site AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 SUPERFAMILY SSF50494 12 265 1.0E-64 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_2055 66e2317f15ba24a0c0f6e20a0e4cb87f 274 PANTHER PTHR24276 3 260 2.9E-70 T 19-04-2016 AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 Gene3D G3DSA:3.40.50.980 24 135 5.7E-9 T 19-04-2016 AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 Gene3D G3DSA:3.40.50.980 136 289 5.6E-28 T 19-04-2016 AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 SUPERFAMILY SSF56801 15 462 1.7E-73 T 19-04-2016 AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 PANTHER PTHR24096 122 389 1.5E-46 T 19-04-2016 AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 ProSitePatterns PS00455 Putative AMP-binding domain signature. 126 137 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 Pfam PF00501 AMP-binding enzyme 14 373 3.8E-50 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0212 08e98a30b0da492bedcf08f57c3ea23f 464 Gene3D G3DSA:2.30.38.10 292 367 3.6E-14 T 19-04-2016 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 PANTHER PTHR30055 8 167 5.0E-29 T 19-04-2016 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 9.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 9.2E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 SUPERFAMILY SSF48498 86 179 2.98E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 PANTHER PTHR30055:SF47 8 167 5.0E-29 T 19-04-2016 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 66 1.9E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 Gene3D G3DSA:1.10.357.10 12 187 4.5E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6797 90d55b3f0d7e2944451efe0d04622bf3 200 SUPERFAMILY SSF46689 12 81 2.92E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7215 874083b8a401d8374bb0701dabe99e2b 68 PANTHER PTHR23023 6 63 3.2E-14 T 19-04-2016 AMED_7215 874083b8a401d8374bb0701dabe99e2b 68 PANTHER PTHR23023:SF122 6 63 3.2E-14 T 19-04-2016 AMED_7215 874083b8a401d8374bb0701dabe99e2b 68 Gene3D G3DSA:3.50.50.60 7 65 6.2E-13 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7215 874083b8a401d8374bb0701dabe99e2b 68 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 59 3.9E-5 T 19-04-2016 AMED_7215 874083b8a401d8374bb0701dabe99e2b 68 SUPERFAMILY SSF51905 1 66 3.31E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0220 5c743d2c09d9bb7fb18fe9e79ab3b908 242 PANTHER PTHR10434 1 240 4.1E-102 T 19-04-2016 AMED_0220 5c743d2c09d9bb7fb18fe9e79ab3b908 242 SUPERFAMILY SSF69593 19 209 3.66E-37 T 19-04-2016 AMED_0220 5c743d2c09d9bb7fb18fe9e79ab3b908 242 Gene3D G3DSA:3.40.1130.10 25 183 4.1E-22 T 19-04-2016 AMED_0220 5c743d2c09d9bb7fb18fe9e79ab3b908 242 PANTHER PTHR10434:SF4 1 240 4.1E-102 T 19-04-2016 AMED_0220 5c743d2c09d9bb7fb18fe9e79ab3b908 242 Pfam PF01553 Acyltransferase 23 149 2.2E-27 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_0220 5c743d2c09d9bb7fb18fe9e79ab3b908 242 SMART SM00563 38 152 3.3E-34 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 375 384 9.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 273 290 9.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 308 319 9.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00385 P450 superfamily signature 384 395 9.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 167 183 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 375 384 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 184 199 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 227 249 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 121 132 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 308 319 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 325 352 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 384 395 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 PRINTS PR00359 B-class P450 signature 353 368 3.2E-42 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3355 3830113d887ae9479244e92021be8b03 434 Gene3D G3DSA:1.10.630.10 44 433 2.0E-102 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 PANTHER PTHR11712 110 434 4.6E-90 T 19-04-2016 AMED_3355 3830113d887ae9479244e92021be8b03 434 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 377 386 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 SUPERFAMILY SSF48264 48 432 5.11E-82 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3355 3830113d887ae9479244e92021be8b03 434 Pfam PF00067 Cytochrome P450 227 405 4.4E-21 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3838 0f4b85e2e9e4b31dcb409ac94c847967 276 SUPERFAMILY SSF56281 31 246 2.57E-32 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3838 0f4b85e2e9e4b31dcb409ac94c847967 276 Pfam PF00753 Metallo-beta-lactamase superfamily 44 222 3.1E-19 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3838 0f4b85e2e9e4b31dcb409ac94c847967 276 Gene3D G3DSA:3.60.15.10 41 245 6.0E-32 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3838 0f4b85e2e9e4b31dcb409ac94c847967 276 PANTHER PTHR23200 8 271 3.6E-38 T 19-04-2016 AMED_3838 0f4b85e2e9e4b31dcb409ac94c847967 276 SMART SM00849 40 242 3.9E-13 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_3838 0f4b85e2e9e4b31dcb409ac94c847967 276 PANTHER PTHR23200:SF40 8 271 3.6E-38 T 19-04-2016 AMED_0505 22af3b0584a30b5cdd1012e7fce9df67 360 Gene3D G3DSA:3.40.50.1100 50 145 9.6E-23 T 19-04-2016 AMED_0505 22af3b0584a30b5cdd1012e7fce9df67 360 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 33 318 7.0E-50 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_0505 22af3b0584a30b5cdd1012e7fce9df67 360 Gene3D G3DSA:3.40.50.1100 146 338 2.6E-38 T 19-04-2016 AMED_0505 22af3b0584a30b5cdd1012e7fce9df67 360 SUPERFAMILY SSF53686 26 338 9.82E-70 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_0505 22af3b0584a30b5cdd1012e7fce9df67 360 PANTHER PTHR10314 6 350 7.8E-171 T 19-04-2016 AMED_0505 22af3b0584a30b5cdd1012e7fce9df67 360 PANTHER PTHR10314:SF126 6 350 7.8E-171 T 19-04-2016 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 PANTHER PTHR30328:SF28 1 218 5.5E-48 T 19-04-2016 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 PANTHER PTHR30328 1 218 5.5E-48 T 19-04-2016 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 Gene3D G3DSA:1.10.357.10 8 205 2.5E-41 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 1.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 1.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 1.2E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9231 a709fbd130f9123b58cdf9af5ed3eee6 218 SUPERFAMILY SSF46689 11 92 1.28E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5811 a4b1716729c5d3571add1885caa947b6 198 Pfam PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) 38 174 4.4E-29 T 19-04-2016 IPR013382 CRISPR-associated protein Cse2 AMED_5811 a4b1716729c5d3571add1885caa947b6 198 TIGRFAM TIGR02548 casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2 35 175 3.5E-24 T 19-04-2016 IPR013382 CRISPR-associated protein Cse2 AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 Gene3D G3DSA:3.90.180.10 2 166 6.6E-46 T 19-04-2016 IPR011032 GroES-like AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 Pfam PF00107 Zinc-binding dehydrogenase 173 304 5.5E-24 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 Gene3D G3DSA:3.40.50.720 167 290 6.8E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 PANTHER PTHR11695:SF526 10 333 2.7E-102 T 19-04-2016 AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 56 70 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 SUPERFAMILY SSF51735 137 306 3.11E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 PANTHER PTHR11695 10 333 2.7E-102 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 SUPERFAMILY SSF50129 11 164 4.07E-42 T 19-04-2016 IPR011032 GroES-like AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 SMART SM00829 1 345 0.0054 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_8391 7fdeff3ae172d80fe6aecc0ce5add409 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 23 127 6.2E-28 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_0818 00f32260aa0074fb065c714b57094cda 1006 Pfam PF14021 Protein of unknown function (DUF4237) 912 996 1.7E-25 T 19-04-2016 IPR025331 Protein of unknown function DUF4237 AMED_0818 00f32260aa0074fb065c714b57094cda 1006 SUPERFAMILY SSF160424 14 145 2.62E-16 T 19-04-2016 IPR006728 Protein of unknown function DUF600 AMED_0818 00f32260aa0074fb065c714b57094cda 1006 PANTHER PTHR42059:SF1 913 1002 1.7E-17 T 19-04-2016 AMED_0818 00f32260aa0074fb065c714b57094cda 1006 PANTHER PTHR42059 913 1002 1.7E-17 T 19-04-2016 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Pfam PF02885 Glycosyl transferase family, helical bundle domain 11 72 1.6E-20 T 19-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Gene3D G3DSA:3.40.1030.10 78 344 8.4E-104 T 19-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 13 342 5.8E-115 T 19-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 PANTHER PTHR11922:SF5 25 40 8.2E-97 T 19-04-2016 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 PANTHER PTHR11922:SF5 67 344 8.2E-97 T 19-04-2016 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 PANTHER PTHR11922 25 40 8.2E-97 T 19-04-2016 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 PANTHER PTHR11922 67 344 8.2E-97 T 19-04-2016 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Pfam PF00591 Glycosyl transferase family, a/b domain 80 333 6.2E-86 T 19-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 SUPERFAMILY SSF47648 9 75 3.14E-19 T 19-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Gene3D G3DSA:1.20.970.10 11 76 3.0E-26 T 19-04-2016 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 SUPERFAMILY SSF52418 80 343 1.1E-82 T 19-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 AMED_2197 eeb9a8d98babc73cd4cf52e048bdfdd7 344 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 11 343 35.577 T 19-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 AMED_2883 dbe1596c45495b4918e8fa18fcf13531 1028 Gene3D G3DSA:3.40.50.300 139 273 5.9E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2883 dbe1596c45495b4918e8fa18fcf13531 1028 Gene3D G3DSA:1.25.10.10 768 907 1.1E-8 T 19-04-2016 IPR011989 Armadillo-like helical AMED_2883 dbe1596c45495b4918e8fa18fcf13531 1028 SUPERFAMILY SSF52540 137 323 1.31E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2883 dbe1596c45495b4918e8fa18fcf13531 1028 SUPERFAMILY SSF48371 751 916 1.98E-7 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_2883 dbe1596c45495b4918e8fa18fcf13531 1028 SUPERFAMILY SSF48431 564 720 3.4E-5 T 19-04-2016 IPR011030 Vitellinogen, superhelical GO:0005319|GO:0006869 Reactome: REACT_22258 AMED_2883 dbe1596c45495b4918e8fa18fcf13531 1028 SUPERFAMILY SSF48431 789 859 3.4E-5 T 19-04-2016 IPR011030 Vitellinogen, superhelical GO:0005319|GO:0006869 Reactome: REACT_22258 AMED_8073 1959aba214807938f643d60dcb624645 922 SUPERFAMILY SSF69304 311 567 1.44E-38 T 19-04-2016 AMED_8073 1959aba214807938f643d60dcb624645 922 SUPERFAMILY SSF51338 583 644 6.05E-9 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8073 1959aba214807938f643d60dcb624645 922 Gene3D G3DSA:2.120.10.30 37 225 5.0E-49 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8073 1959aba214807938f643d60dcb624645 922 Gene3D G3DSA:2.120.10.30 502 568 2.4E-5 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8073 1959aba214807938f643d60dcb624645 922 Pfam PF01979 Amidohydrolase family 630 922 1.1E-7 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_8073 1959aba214807938f643d60dcb624645 922 Gene3D G3DSA:3.20.20.140 651 922 1.4E-42 T 19-04-2016 AMED_8073 1959aba214807938f643d60dcb624645 922 Pfam PF07676 WD40-like Beta Propeller Repeat 349 375 3.2E-4 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_8073 1959aba214807938f643d60dcb624645 922 Pfam PF07676 WD40-like Beta Propeller Repeat 115 148 8.4E-10 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_8073 1959aba214807938f643d60dcb624645 922 Pfam PF07676 WD40-like Beta Propeller Repeat 161 183 8.6E-4 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_8073 1959aba214807938f643d60dcb624645 922 Pfam PF07676 WD40-like Beta Propeller Repeat 488 507 7.7E-4 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_8073 1959aba214807938f643d60dcb624645 922 Pfam PF07676 WD40-like Beta Propeller Repeat 71 106 6.2E-10 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_8073 1959aba214807938f643d60dcb624645 922 Gene3D G3DSA:2.130.10.10 238 501 6.8E-49 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_8073 1959aba214807938f643d60dcb624645 922 SUPERFAMILY SSF51556 632 821 2.3E-39 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8073 1959aba214807938f643d60dcb624645 922 SUPERFAMILY SSF51556 862 922 2.3E-39 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8073 1959aba214807938f643d60dcb624645 922 SUPERFAMILY SSF69304 39 220 1.11E-35 T 19-04-2016 AMED_8073 1959aba214807938f643d60dcb624645 922 PANTHER PTHR36842 45 386 6.7E-18 T 19-04-2016 AMED_8073 1959aba214807938f643d60dcb624645 922 Gene3D G3DSA:2.30.40.10 588 650 2.0E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3609 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 SUPERFAMILY SSF46689 7 83 6.48E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3609 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 SUPERFAMILY SSF48498 85 185 2.29E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3609 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 PANTHER PTHR30055 1 184 1.9E-34 T 19-04-2016 AMED_3609 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 65 1.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3609 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 Gene3D G3DSA:1.10.357.10 6 185 9.8E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3609 e06cd0ec8b56f3cf82dc4d8e67e29b3c 185 PANTHER PTHR30055:SF19 1 184 1.9E-34 T 19-04-2016 AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 SUPERFAMILY SSF53092 12 149 1.74E-24 T 19-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 PANTHER PTHR10804:SF86 95 377 3.5E-75 T 19-04-2016 AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 Pfam PF01321 Creatinase/Prolidase N-terminal domain 19 151 4.8E-16 T 19-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 SUPERFAMILY SSF55920 150 378 6.54E-71 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 308 320 - T 19-04-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 Pfam PF00557 Metallopeptidase family M24 159 362 1.6E-59 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 Gene3D G3DSA:3.40.350.10 12 149 1.1E-22 T 19-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 PANTHER PTHR10804 95 377 3.5E-75 T 19-04-2016 AMED_4873 eee34434a6b2998bc9ddd43c6a51dfcd 380 Gene3D G3DSA:3.90.230.10 152 378 5.4E-71 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMED_5036 9c352c9ee29d21f6bab0dcb75716dc72 352 SUPERFAMILY SSF81345 23 344 7.45E-68 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_5036 9c352c9ee29d21f6bab0dcb75716dc72 352 Gene3D G3DSA:1.10.3470.10 27 347 5.4E-87 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_5036 9c352c9ee29d21f6bab0dcb75716dc72 352 PANTHER PTHR30472:SF24 8 350 1.9E-110 T 19-04-2016 AMED_5036 9c352c9ee29d21f6bab0dcb75716dc72 352 PANTHER PTHR30472 8 350 1.9E-110 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_5036 9c352c9ee29d21f6bab0dcb75716dc72 352 Pfam PF01032 FecCD transport family 39 344 2.2E-79 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_8664 64fe56bc0254b67153780e30b30c8c69 322 Gene3D G3DSA:3.40.1660.10 228 257 2.4E-5 T 19-04-2016 AMED_8664 64fe56bc0254b67153780e30b30c8c69 322 Gene3D G3DSA:3.40.1660.10 8 36 2.4E-5 T 19-04-2016 AMED_8664 64fe56bc0254b67153780e30b30c8c69 322 SUPERFAMILY SSF159501 8 321 1.02E-47 T 19-04-2016 AMED_8664 64fe56bc0254b67153780e30b30c8c69 322 Pfam PF05139 Erythromycin esterase 36 283 4.9E-32 T 19-04-2016 IPR007815 Erythromycin esterase GO:0046677 AMED_8664 64fe56bc0254b67153780e30b30c8c69 322 Gene3D G3DSA:3.30.1870.10 58 90 1.7E-4 T 19-04-2016 AMED_8664 64fe56bc0254b67153780e30b30c8c69 322 PANTHER PTHR31299 8 259 2.5E-15 T 19-04-2016 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 Gene3D G3DSA:1.10.630.10 189 416 8.2E-114 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 Gene3D G3DSA:1.10.630.10 14 157 8.2E-114 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PANTHER PTHR24286:SF42 10 183 6.9E-81 T 19-04-2016 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PANTHER PTHR24286 10 183 6.9E-81 T 19-04-2016 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PANTHER PTHR24286:SF42 203 415 6.9E-81 T 19-04-2016 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 SUPERFAMILY SSF48264 182 412 4.58E-86 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 SUPERFAMILY SSF48264 10 148 4.58E-86 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 360 369 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 358 367 3.8E-35 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 337 352 3.8E-35 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 309 336 3.8E-35 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 292 303 3.8E-35 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 77 88 3.8E-35 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PRINTS PR00359 B-class P450 signature 367 378 3.8E-35 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 Pfam PF00067 Cytochrome P450 241 396 5.1E-22 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2027 e7fc9469944261cdf3e59d8655d25861 417 PANTHER PTHR24286 203 415 6.9E-81 T 19-04-2016 AMED_2820 4b1c970e202406fe53055efb94757262 286 SUPERFAMILY SSF56059 88 280 3.35E-13 T 19-04-2016 AMED_2820 4b1c970e202406fe53055efb94757262 286 PANTHER PTHR39217 12 286 2.9E-49 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 Pfam PF00561 alpha/beta hydrolase fold 78 433 1.9E-26 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 PANTHER PTHR10992 176 270 3.1E-40 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 PANTHER PTHR10992 7 128 3.1E-40 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 PANTHER PTHR10992 336 450 3.1E-40 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 Gene3D G3DSA:3.40.50.1820 45 129 2.6E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 Gene3D G3DSA:3.40.50.1820 174 449 2.6E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 PANTHER PTHR10992:SF863 176 270 3.1E-40 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 PANTHER PTHR10992:SF863 7 128 3.1E-40 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 PANTHER PTHR10992:SF863 336 450 3.1E-40 T 19-04-2016 AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 SUPERFAMILY SSF53474 176 276 1.04E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 SUPERFAMILY SSF53474 351 448 1.04E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2310 daa8ec3dd2b9c28a18383d33d9857963 464 SUPERFAMILY SSF53474 72 130 1.04E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 SMART SM00382 25 243 6.7E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 PANTHER PTHR24220 2 263 2.4E-67 T 19-04-2016 AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 SUPERFAMILY SSF52540 3 215 6.88E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 PANTHER PTHR24220:SF523 2 263 2.4E-67 T 19-04-2016 AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 ProSitePatterns PS00211 ABC transporters family signature. 124 138 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 Gene3D G3DSA:3.40.50.300 1 218 1.5E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1393 8a434fd87b8a0f3a42049130ed42db62 298 Pfam PF00005 ABC transporter 16 152 1.1E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 PANTHER PTHR32305 554 733 1.5E-78 T 19-04-2016 AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 PANTHER PTHR32305 767 1354 1.5E-78 T 19-04-2016 AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 643 680 1.6E-5 T 19-04-2016 IPR031325 RHS repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 1134 1170 1.0E-11 T 19-04-2016 IPR031325 RHS repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 898 931 4.2E-5 T 19-04-2016 IPR031325 RHS repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 579 613 2.1E-5 T 19-04-2016 IPR031325 RHS repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 1155 1184 7.9E-8 T 19-04-2016 IPR031325 RHS repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF05593 RHS Repeat 861 893 5.4E-8 T 19-04-2016 IPR031325 RHS repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1120 1154 3.1E-5 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 877 906 3.9E-6 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1155 1185 7.4E-8 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 558 593 1.1E-8 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 644 684 8.6E-9 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 898 935 6.0E-4 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 835 876 2.3E-8 T 19-04-2016 IPR006530 YD repeat AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 Pfam PF03527 RHS protein 1245 1274 1.1E-8 T 19-04-2016 IPR001826 RHS protein AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 SUPERFAMILY SSF140453 85 147 9.42E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 PANTHER PTHR32305:SF6 767 1354 1.5E-78 T 19-04-2016 AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1284 1349 1.5E-21 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_5234 e6c103121a1e119acb71c8ab8258364e 1619 PANTHER PTHR32305:SF6 554 733 1.5E-78 T 19-04-2016 AMED_0412 707d49752b0f526bcc82944d529026fe 342 Gene3D G3DSA:3.40.50.1100 42 129 9.7E-6 T 19-04-2016 AMED_0412 707d49752b0f526bcc82944d529026fe 342 PANTHER PTHR10314 13 326 2.7E-69 T 19-04-2016 AMED_0412 707d49752b0f526bcc82944d529026fe 342 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 324 6.8E-52 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_0412 707d49752b0f526bcc82944d529026fe 342 SUPERFAMILY SSF53686 15 334 3.43E-71 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_0412 707d49752b0f526bcc82944d529026fe 342 Gene3D G3DSA:3.40.50.1100 130 335 9.8E-52 T 19-04-2016 AMED_0412 707d49752b0f526bcc82944d529026fe 342 PIRSF PIRSF006278 9 341 2.4E-80 T 19-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase AMED_0412 707d49752b0f526bcc82944d529026fe 342 PANTHER PTHR10314:SF105 13 326 2.7E-69 T 19-04-2016 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PANTHER PTHR10992 3 162 2.7E-104 T 19-04-2016 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PANTHER PTHR10992 196 305 2.7E-104 T 19-04-2016 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 Gene3D G3DSA:3.40.50.1820 2 305 4.1E-88 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PRINTS PR00412 Epoxide hydrolase signature 29 47 2.8E-27 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PRINTS PR00412 Epoxide hydrolase signature 280 302 2.8E-27 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PRINTS PR00412 Epoxide hydrolase signature 109 122 2.8E-27 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PRINTS PR00412 Epoxide hydrolase signature 95 108 2.8E-27 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PRINTS PR00412 Epoxide hydrolase signature 49 64 2.8E-27 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 Pfam PF12697 Alpha/beta hydrolase family 25 296 9.3E-24 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 SUPERFAMILY SSF53474 3 305 2.51E-78 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PANTHER PTHR10992:SF305 3 162 2.7E-104 T 19-04-2016 AMED_3397 293168d7abf24c8ea061605f1b4737ad 306 PANTHER PTHR10992:SF305 196 305 2.7E-104 T 19-04-2016 AMED_3141 12820efdbf91ebb62d6f50d10dc774be 341 PANTHER PTHR21310 31 250 5.9E-20 T 19-04-2016 AMED_3141 12820efdbf91ebb62d6f50d10dc774be 341 Gene3D G3DSA:3.90.1200.10 110 291 9.3E-36 T 19-04-2016 AMED_3141 12820efdbf91ebb62d6f50d10dc774be 341 PANTHER PTHR21310:SF14 31 250 5.9E-20 T 19-04-2016 AMED_3141 12820efdbf91ebb62d6f50d10dc774be 341 SUPERFAMILY SSF56112 7 312 2.55E-58 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_3141 12820efdbf91ebb62d6f50d10dc774be 341 Pfam PF01636 Phosphotransferase enzyme family 34 249 9.9E-50 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_4062 b6b4134e281e0206924df97329efe078 343 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 8 115 2.4E-11 T 19-04-2016 IPR010033 HAD-superfamily phosphatase, subfamily IIIC AMED_4062 b6b4134e281e0206924df97329efe078 343 SUPERFAMILY SSF55729 170 316 1.7E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4062 b6b4134e281e0206924df97329efe078 343 SUPERFAMILY SSF56784 6 116 3.53E-13 T 19-04-2016 IPR023214 HAD-like domain AMED_4062 b6b4134e281e0206924df97329efe078 343 TIGRFAM TIGR01686 FkbH: FkbH domain 6 313 2.8E-68 T 19-04-2016 IPR010037 FkbH domain AMED_4062 b6b4134e281e0206924df97329efe078 343 Gene3D G3DSA:3.40.630.30 182 291 1.2E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4062 b6b4134e281e0206924df97329efe078 343 Gene3D G3DSA:3.40.50.1000 6 131 1.0E-17 T 19-04-2016 IPR023214 HAD-like domain AMED_4428 bfb02b5c2d655d0d093f8507f9b2aa61 390 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 127 6.1E-11 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_4428 bfb02b5c2d655d0d093f8507f9b2aa61 390 Gene3D G3DSA:3.40.50.720 3 144 2.4E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4428 bfb02b5c2d655d0d093f8507f9b2aa61 390 PANTHER PTHR22604 3 325 2.4E-24 T 19-04-2016 AMED_4428 bfb02b5c2d655d0d093f8507f9b2aa61 390 SUPERFAMILY SSF51735 3 155 2.4E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4428 bfb02b5c2d655d0d093f8507f9b2aa61 390 Gene3D G3DSA:3.30.360.10 145 325 1.1E-12 T 19-04-2016 AMED_4428 bfb02b5c2d655d0d093f8507f9b2aa61 390 SUPERFAMILY SSF55347 132 282 2.83E-15 T 19-04-2016 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 SUPERFAMILY SSF48264 7 423 1.17E-93 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 375 384 5.0E-10 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 250 267 5.0E-10 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 299 310 5.0E-10 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00385 P450 superfamily signature 384 395 5.0E-10 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 Gene3D G3DSA:1.10.630.10 7 431 6.3E-98 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PANTHER PTHR24286 10 441 8.8E-84 T 19-04-2016 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 Pfam PF00067 Cytochrome P450 8 420 3.5E-65 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 384 407 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 338 362 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 239 256 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 374 384 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 259 285 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 30 49 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 PRINTS PR00463 E-class P450 group I signature 298 316 9.4E-22 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_7819 f3ecb1df42131d3b16b8152763da01e7 441 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 377 386 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_4928 b4e33a1fa1f945df035dd6ad365d6676 158 Pfam PF12802 MarR family 34 92 2.8E-11 T 19-04-2016 AMED_4928 b4e33a1fa1f945df035dd6ad365d6676 158 Gene3D G3DSA:1.10.10.10 10 136 1.2E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4928 b4e33a1fa1f945df035dd6ad365d6676 158 SMART SM00347 28 128 2.7E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4928 b4e33a1fa1f945df035dd6ad365d6676 158 PANTHER PTHR33164 3 152 3.3E-14 T 19-04-2016 AMED_4928 b4e33a1fa1f945df035dd6ad365d6676 158 SUPERFAMILY SSF46785 15 136 7.18E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 Gene3D G3DSA:3.40.50.1110 178 382 1.1E-22 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 181 376 3.5E-20 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 SUPERFAMILY SSF52266 179 386 2.83E-35 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 PANTHER PTHR30383:SF3 278 387 4.8E-76 T 19-04-2016 AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 PANTHER PTHR30383:SF3 32 257 4.8E-76 T 19-04-2016 AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 PANTHER PTHR30383 278 387 4.8E-76 T 19-04-2016 AMED_8150 8fdd03f2c9b1d1f37920a28f8e642b62 388 PANTHER PTHR30383 32 257 4.8E-76 T 19-04-2016 AMED_9010 5601fde2783d6daaeb1422507be10c96 141 Pfam PF00085 Thioredoxin 48 124 5.5E-7 T 19-04-2016 IPR013766 Thioredoxin domain GO:0045454 AMED_9010 5601fde2783d6daaeb1422507be10c96 141 SUPERFAMILY SSF52833 49 135 2.28E-14 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_9010 5601fde2783d6daaeb1422507be10c96 141 Gene3D G3DSA:3.40.30.10 49 133 1.0E-11 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 PANTHER PTHR24320 10 314 1.1E-92 T 19-04-2016 AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 3.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 240 260 3.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 3.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 220 3.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 Gene3D G3DSA:3.40.50.720 27 266 2.7E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 Pfam PF00106 short chain dehydrogenase 30 224 5.6E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5933 d75ef08d1ca0fb4a073e78c7579eaf77 321 SUPERFAMILY SSF51735 27 277 1.11E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7050 086e92eae6bf171d349189493548bcc7 118 SUPERFAMILY SSF54593 2 117 1.88E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7050 086e92eae6bf171d349189493548bcc7 118 PANTHER PTHR33993 4 114 5.2E-18 T 19-04-2016 AMED_7050 086e92eae6bf171d349189493548bcc7 118 Gene3D G3DSA:3.10.180.10 7 117 1.1E-26 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7050 086e92eae6bf171d349189493548bcc7 118 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 111 6.1E-9 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_7862 eb4b483266d05fca722acc4bdf9e70dc 454 PANTHER PTHR31650:SF3 1 454 4.6E-170 T 19-04-2016 AMED_7862 eb4b483266d05fca722acc4bdf9e70dc 454 Pfam PF06974 Protein of unknown function (DUF1298) 304 449 2.0E-35 T 19-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_7862 eb4b483266d05fca722acc4bdf9e70dc 454 PANTHER PTHR31650 1 454 4.6E-170 T 19-04-2016 AMED_7862 eb4b483266d05fca722acc4bdf9e70dc 454 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 7 262 2.5E-78 T 19-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_7862 eb4b483266d05fca722acc4bdf9e70dc 454 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 7 452 4.8E-146 T 19-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_7862 eb4b483266d05fca722acc4bdf9e70dc 454 SUPERFAMILY SSF52777 51 149 5.34E-6 T 19-04-2016 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 SMART SM00354 4 74 3.3E-20 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 SUPERFAMILY SSF47413 6 60 8.81E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 Gene3D G3DSA:1.10.260.40 5 53 1.0E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 51 5.2E-13 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 Gene3D G3DSA:3.40.50.2300 54 176 1.6E-42 T 19-04-2016 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 Pfam PF13377 Periplasmic binding protein-like domain 171 334 7.9E-36 T 19-04-2016 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 PANTHER PTHR30146 4 337 1.3E-105 T 19-04-2016 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 Gene3D G3DSA:3.40.50.2300 177 306 3.0E-45 T 19-04-2016 AMED_7415 be8ffae81857b4bee70bda3eef64b8fb 352 SUPERFAMILY SSF53822 63 338 5.3E-69 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 7.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 PANTHER PTHR30055:SF8 13 175 6.8E-22 T 19-04-2016 AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 PANTHER PTHR30055 13 175 6.8E-22 T 19-04-2016 AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 Gene3D G3DSA:1.10.357.10 8 187 3.5E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 SUPERFAMILY SSF46689 8 76 1.9E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.3E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6743 550ba92a4f9709050676e22e3fb23d6e 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.3E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 1.6E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 7.2E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 7.2E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 SUPERFAMILY SSF46689 4 73 3.3E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 SUPERFAMILY SSF48498 77 187 3.04E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 PANTHER PTHR30055 3 184 3.4E-19 T 19-04-2016 AMED_0301 6b96c065cca589b0e6efe883f79019e6 187 Gene3D G3DSA:1.10.357.10 3 187 3.5E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1965 e177dc7a75a2cd2d492e05ea42f8b327 280 Pfam PF01351 Ribonuclease HII 23 202 3.2E-34 T 19-04-2016 IPR024567 Ribonuclease HII/HIII domain AMED_1965 e177dc7a75a2cd2d492e05ea42f8b327 280 Gene3D G3DSA:3.30.420.10 22 163 1.5E-35 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1965 e177dc7a75a2cd2d492e05ea42f8b327 280 SUPERFAMILY SSF53098 16 206 6.37E-56 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1965 e177dc7a75a2cd2d492e05ea42f8b327 280 PANTHER PTHR10954 22 206 1.5E-55 T 19-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 AMED_1965 e177dc7a75a2cd2d492e05ea42f8b327 280 Hamap MF_00052_B Ribonuclease HII [rnhB]. 21 202 33.63 T 19-04-2016 IPR022898 Ribonuclease HII GO:0004523 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 Pfam PF07702 UTRA domain 103 240 9.9E-36 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 SMART SM00866 102 240 1.8E-40 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 SMART SM00345 24 82 6.8E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 PANTHER PTHR11751 19 85 1.3E-21 T 19-04-2016 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 PANTHER PTHR11751 131 154 1.3E-21 T 19-04-2016 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 PANTHER PTHR11751:SF333 19 85 1.3E-21 T 19-04-2016 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 PANTHER PTHR11751:SF333 131 154 1.3E-21 T 19-04-2016 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 SUPERFAMILY SSF64288 70 248 1.16E-49 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_2726 afc228204d614a443615e9b5633ac2d2 262 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 81 9.6E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 1.9E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 1.9E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2726 afc228204d614a443615e9b5633ac2d2 262 SUPERFAMILY SSF46785 16 91 7.28E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2726 afc228204d614a443615e9b5633ac2d2 262 Gene3D G3DSA:1.10.10.10 16 78 4.2E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2726 afc228204d614a443615e9b5633ac2d2 262 Gene3D G3DSA:3.40.1410.10 79 247 1.0E-46 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_1835 e84918be3709cd7b20106019816c461b 261 SUPERFAMILY SSF51735 6 250 3.59E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1835 e84918be3709cd7b20106019816c461b 261 PANTHER PTHR24321 2 251 1.8E-59 T 19-04-2016 AMED_1835 e84918be3709cd7b20106019816c461b 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_1835 e84918be3709cd7b20106019816c461b 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 249 2.5E-66 T 19-04-2016 AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 3.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.0E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.2E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.2E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.2E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1835 e84918be3709cd7b20106019816c461b 261 PANTHER PTHR24321:SF6 2 251 1.8E-59 T 19-04-2016 AMED_1835 e84918be3709cd7b20106019816c461b 261 Gene3D G3DSA:3.40.50.720 3 250 1.8E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7914 56a9793952df803f34f31b2e47eaca72 281 Pfam PF00106 short chain dehydrogenase 6 191 6.3E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 2.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 2.4E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PANTHER PTHR24322 149 180 6.1E-47 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PANTHER PTHR24322 10 133 6.1E-47 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 Gene3D G3DSA:3.40.50.720 4 217 1.6E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7914 56a9793952df803f34f31b2e47eaca72 281 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 181 0.0011 T 19-04-2016 AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.0E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.0E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.0E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.0E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.0E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.0E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7914 56a9793952df803f34f31b2e47eaca72 281 SUPERFAMILY SSF51735 1 246 4.53E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 SUPERFAMILY SSF47973 1 149 6.67E-57 T 19-04-2016 IPR023798 Ribosomal protein S7 domain AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 19-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.1E-59 T 19-04-2016 IPR023798 Ribosomal protein S7 domain AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 34.744 T 19-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.2E-64 T 19-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 Gene3D G3DSA:1.10.455.10 8 156 4.8E-61 T 19-04-2016 IPR023798 Ribosomal protein S7 domain AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 PIRSF PIRSF002122 5 156 1.2E-55 T 19-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMED_0673 88a056b4de17569ee256fa8c9779dca8 156 PANTHER PTHR11205 1 156 1.2E-87 T 19-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMED_2333 36d8cce8bee97a6bcc005ae13a09527e 243 PANTHER PTHR35908 1 130 5.3E-37 T 19-04-2016 AMED_2333 36d8cce8bee97a6bcc005ae13a09527e 243 Gene3D G3DSA:3.10.180.10 134 241 1.8E-5 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2333 36d8cce8bee97a6bcc005ae13a09527e 243 SUPERFAMILY SSF54593 1 124 5.49E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2333 36d8cce8bee97a6bcc005ae13a09527e 243 PANTHER PTHR35908:SF1 1 130 5.3E-37 T 19-04-2016 AMED_2333 36d8cce8bee97a6bcc005ae13a09527e 243 SUPERFAMILY SSF54593 134 242 3.38E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2333 36d8cce8bee97a6bcc005ae13a09527e 243 Gene3D G3DSA:3.10.180.10 2 121 3.6E-9 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 Pfam PF13463 Winged helix DNA-binding domain 42 105 2.8E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 SUPERFAMILY SSF46785 21 144 1.57E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 PANTHER PTHR33164 52 155 3.5E-13 T 19-04-2016 AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 Gene3D G3DSA:1.10.10.10 13 144 3.6E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 SMART SM00347 33 132 4.5E-4 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 2.3E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 2.3E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 2.3E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5081 56a1daad1a3c89ee408d591ca051da32 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 2.3E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 SUPERFAMILY SSF52172 1 152 2.85E-29 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Pfam PF09339 IclR helix-turn-helix domain 160 199 7.5E-7 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 SMART SM00448 2 110 1.2E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 PANTHER PTHR26402:SF434 2 204 1.7E-47 T 19-04-2016 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 SUPERFAMILY SSF46785 152 218 1.59E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Gene3D G3DSA:3.40.50.2300 1 122 6.5E-25 T 19-04-2016 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 PIRSF PIRSF006171 1 219 4.0E-70 T 19-04-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 PANTHER PTHR26402 2 204 1.7E-47 T 19-04-2016 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Pfam PF00072 Response regulator receiver domain 5 110 2.6E-18 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0255 57e27d4d7f527e9c6db77bc1bcc4f6e3 219 Gene3D G3DSA:1.10.10.10 160 199 5.7E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4935 6fad9e60aad3b62aeda1635e3a4a6561 262 ProDom PD040491 SCO1799 RV1486C/MT1533 MB1522C CGL1536 ML1804 MAV321 92 247 6.0E-10 T 19-04-2016 AMED_3258 29e8c1a5796a0b135afd618bb25168af 205 Gene3D G3DSA:3.40.50.150 6 169 6.9E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3258 29e8c1a5796a0b135afd618bb25168af 205 PANTHER PTHR10108:SF714 5 194 1.1E-37 T 19-04-2016 AMED_3258 29e8c1a5796a0b135afd618bb25168af 205 Pfam PF08241 Methyltransferase domain 46 140 5.5E-24 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_3258 29e8c1a5796a0b135afd618bb25168af 205 PANTHER PTHR10108 5 194 1.1E-37 T 19-04-2016 AMED_3258 29e8c1a5796a0b135afd618bb25168af 205 SUPERFAMILY SSF53335 5 191 1.01E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7045 f6248d4e84591cb4bbb423871938b701 344 PANTHER PTHR34308:SF1 3 305 1.3E-92 T 19-04-2016 AMED_7045 f6248d4e84591cb4bbb423871938b701 344 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 303 91.607 T 19-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 AMED_7045 f6248d4e84591cb4bbb423871938b701 344 Pfam PF03186 CobD/Cbib protein 2 278 8.4E-90 T 19-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 AMED_7045 f6248d4e84591cb4bbb423871938b701 344 PANTHER PTHR34308 3 305 1.3E-92 T 19-04-2016 AMED_7045 f6248d4e84591cb4bbb423871938b701 344 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 5 268 4.3E-55 T 19-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 AMED_5358 27b1c9808a8a3db6310e9b3ae869c8e3 218 SUPERFAMILY SSF46689 14 98 2.18E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5358 27b1c9808a8a3db6310e9b3ae869c8e3 218 PANTHER PTHR30055 9 197 5.4E-23 T 19-04-2016 AMED_5358 27b1c9808a8a3db6310e9b3ae869c8e3 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 1.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5358 27b1c9808a8a3db6310e9b3ae869c8e3 218 Gene3D G3DSA:1.10.357.10 14 203 5.6E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7247 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 PANTHER PTHR23508 1 402 5.9E-129 T 19-04-2016 AMED_7247 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 PANTHER PTHR23508:SF1 1 402 5.9E-129 T 19-04-2016 AMED_7247 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 SUPERFAMILY SSF103473 2 403 8.5E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7247 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 Gene3D G3DSA:1.20.1250.20 29 202 7.3E-19 T 19-04-2016 AMED_7247 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 Gene3D G3DSA:1.20.1250.20 227 402 8.4E-18 T 19-04-2016 AMED_7247 59ab38d1a4831bd0d5b5ac8d5d5994d3 424 Pfam PF07690 Major Facilitator Superfamily 33 343 1.5E-25 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0125 b89ed0e3552a8ee53c4db9bda7a77283 226 Gene3D G3DSA:3.40.50.1820 3 221 3.4E-32 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0125 b89ed0e3552a8ee53c4db9bda7a77283 226 Pfam PF12697 Alpha/beta hydrolase family 3 216 1.9E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0125 b89ed0e3552a8ee53c4db9bda7a77283 226 PANTHER PTHR37017 3 216 4.4E-12 T 19-04-2016 AMED_0125 b89ed0e3552a8ee53c4db9bda7a77283 226 SUPERFAMILY SSF53474 3 220 4.24E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8037 f92bbf35d30fc4671ab8bd17e0b405ec 365 Pfam PF03888 MucB/RseB N-terminal domain 86 236 4.8E-5 T 19-04-2016 IPR033434 MucB/RseB, N-terminal AMED_8037 f92bbf35d30fc4671ab8bd17e0b405ec 365 SUPERFAMILY SSF89392 96 253 7.06E-14 T 19-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMED_8037 f92bbf35d30fc4671ab8bd17e0b405ec 365 Gene3D G3DSA:2.50.20.10 95 252 1.2E-17 T 19-04-2016 AMED_8037 f92bbf35d30fc4671ab8bd17e0b405ec 365 PANTHER PTHR37507 110 251 9.5E-13 T 19-04-2016 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 6 286 39.557 T 19-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 27 285 1.6E-40 T 19-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 SUPERFAMILY SSF53335 12 283 9.83E-45 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 Pfam PF05175 Methyltransferase small domain 109 198 8.6E-11 T 19-04-2016 IPR007848 Methyltransferase small domain GO:0008168 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 191 197 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 Gene3D G3DSA:3.40.50.150 90 286 7.7E-53 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 PANTHER PTHR18895 9 286 8.4E-70 T 19-04-2016 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 28 282 1.1E-64 T 19-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 Gene3D G3DSA:1.10.8.10 9 78 5.4E-15 T 19-04-2016 AMED_7786 f5d2574ba39aff24257cbbc893f1a052 288 PANTHER PTHR18895:SF64 9 286 8.4E-70 T 19-04-2016 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 Gene3D G3DSA:3.30.200.20 19 93 3.3E-22 T 19-04-2016 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 PANTHER PTHR24362:SF160 1 281 6.2E-84 T 19-04-2016 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 SMART SM00220 26 277 3.0E-60 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 Gene3D G3DSA:1.10.510.10 94 275 3.8E-48 T 19-04-2016 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 SUPERFAMILY SSF56112 9 282 5.8E-69 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 PANTHER PTHR24362 1 281 6.2E-84 T 19-04-2016 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 Pfam PF00069 Protein kinase domain 29 273 5.8E-49 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 32 55 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_6301 6d2ad84767cc25073f718976d2ac2004 493 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 146 158 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8393 ed502d432ec72032a698508bd594070f 272 PANTHER PTHR30011 3 197 1.0E-11 T 19-04-2016 AMED_8393 ed502d432ec72032a698508bd594070f 272 Gene3D G3DSA:3.20.20.30 2 262 2.8E-27 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8393 ed502d432ec72032a698508bd594070f 272 Pfam PF00296 Luciferase-like monooxygenase 12 119 1.4E-15 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8393 ed502d432ec72032a698508bd594070f 272 Pfam PF00296 Luciferase-like monooxygenase 135 202 8.0E-5 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8393 ed502d432ec72032a698508bd594070f 272 SUPERFAMILY SSF51679 3 257 1.15E-29 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 SUPERFAMILY SSF52402 152 291 1.17E-32 T 19-04-2016 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 PRINTS PR01438 Universal stress protein signature 267 289 8.9E-17 T 19-04-2016 IPR006015 Universal stress protein A AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 PRINTS PR01438 Universal stress protein signature 249 261 8.9E-17 T 19-04-2016 IPR006015 Universal stress protein A AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 PRINTS PR01438 Universal stress protein signature 6 24 8.9E-17 T 19-04-2016 IPR006015 Universal stress protein A AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 PANTHER PTHR31964 153 294 6.3E-26 T 19-04-2016 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 Pfam PF00582 Universal stress protein family 153 289 3.5E-27 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 Pfam PF00582 Universal stress protein family 8 144 1.4E-13 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 Gene3D G3DSA:3.40.50.620 8 139 2.4E-18 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 SUPERFAMILY SSF52402 8 147 1.93E-17 T 19-04-2016 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 PANTHER PTHR31964:SF42 153 294 6.3E-26 T 19-04-2016 AMED_5483 3bc2184c17f398ae569abd1e83d0469a 294 Gene3D G3DSA:3.40.50.620 140 289 3.2E-40 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_7641 1abe10516a1d18bc187396ae11a2473c 273 Gene3D G3DSA:3.20.20.30 14 99 1.5E-12 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7641 1abe10516a1d18bc187396ae11a2473c 273 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 8 272 8.0E-97 T 19-04-2016 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted AMED_7641 1abe10516a1d18bc187396ae11a2473c 273 Gene3D G3DSA:3.20.20.30 125 266 1.1E-10 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7641 1abe10516a1d18bc187396ae11a2473c 273 SUPERFAMILY SSF51679 13 271 2.86E-32 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7641 1abe10516a1d18bc187396ae11a2473c 273 Pfam PF00296 Luciferase-like monooxygenase 14 104 7.0E-10 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 PANTHER PTHR21294 1 244 9.3E-97 T 19-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 SUPERFAMILY SSF52402 3 255 6.98E-75 T 19-04-2016 AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 Gene3D G3DSA:3.40.50.620 3 260 1.2E-90 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 Pfam PF01012 Electron transfer flavoprotein domain 26 209 2.2E-51 T 19-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 PANTHER PTHR21294:SF0 1 244 9.3E-97 T 19-04-2016 AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 PIRSF PIRSF000090 2 261 5.1E-86 T 19-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 AMED_1653 7fc8b0752d63fc541a55dd35e35175aa 261 SMART SM00893 24 214 5.1E-58 T 19-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 Gene3D G3DSA:3.30.300.30 445 555 9.8E-16 T 19-04-2016 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 SUPERFAMILY SSF56801 12 559 1.96E-105 T 19-04-2016 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 Pfam PF00501 AMP-binding enzyme 19 453 1.4E-80 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 Gene3D G3DSA:3.40.50.980 12 173 5.0E-30 T 19-04-2016 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 Gene3D G3DSA:3.40.50.980 174 337 1.8E-30 T 19-04-2016 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 Gene3D G3DSA:2.30.38.10 370 443 1.3E-18 T 19-04-2016 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 PANTHER PTHR22754:SF26 14 558 2.2E-177 T 19-04-2016 AMED_4483 f59a62db09f7503ac39d628c5919c7b4 573 PANTHER PTHR22754 14 558 2.2E-177 T 19-04-2016 AMED_6393 09561d00b087527951efeb3d99385198 93 Gene3D G3DSA:2.60.40.10 26 79 1.0E-5 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_6393 09561d00b087527951efeb3d99385198 93 SUPERFAMILY SSF81296 22 85 1.26E-11 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.0E-24 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 Pfam PF03466 LysR substrate binding domain 88 291 1.2E-48 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 Gene3D G3DSA:1.10.10.10 1 86 2.0E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.7E-11 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.7E-11 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.7E-11 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 PANTHER PTHR30346 1 294 2.6E-78 T 19-04-2016 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 SUPERFAMILY SSF46785 1 85 9.37E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 Gene3D G3DSA:3.40.190.10 177 258 9.0E-21 T 19-04-2016 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 Gene3D G3DSA:3.40.190.10 90 176 1.3E-21 T 19-04-2016 AMED_8356 70edd5cebd79ab3450a57e86c32f2100 294 SUPERFAMILY SSF53850 89 293 3.95E-47 T 19-04-2016 AMED_6802 6be07b336b9cc66ff81431f529a0138d 265 Gene3D G3DSA:3.40.50.720 2 199 1.9E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6802 6be07b336b9cc66ff81431f529a0138d 265 Pfam PF13460 NAD(P)H-binding 6 164 1.0E-12 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6802 6be07b336b9cc66ff81431f529a0138d 265 PANTHER PTHR14194:SF21 1 265 5.6E-72 T 19-04-2016 AMED_6802 6be07b336b9cc66ff81431f529a0138d 265 SUPERFAMILY SSF51735 2 258 5.14E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6802 6be07b336b9cc66ff81431f529a0138d 265 PANTHER PTHR14194 1 265 5.6E-72 T 19-04-2016 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 SUPERFAMILY SSF53474 60 334 8.51E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 PANTHER PTHR10992 59 334 6.3E-37 T 19-04-2016 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 Pfam PF00561 alpha/beta hydrolase fold 86 183 2.1E-17 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 PANTHER PTHR10992:SF842 59 334 6.3E-37 T 19-04-2016 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 PRINTS PR00412 Epoxide hydrolase signature 309 331 9.9E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 PRINTS PR00412 Epoxide hydrolase signature 91 109 9.9E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 PRINTS PR00412 Epoxide hydrolase signature 168 181 9.9E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3672 078042a92d7f1786cf4f9c2f6b89ae99 339 Gene3D G3DSA:3.40.50.1820 60 336 1.0E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2330 16b904c454a5f37f4acf59d7cf44c747 170 PANTHER PTHR30411 8 155 3.6E-21 T 19-04-2016 AMED_2330 16b904c454a5f37f4acf59d7cf44c747 170 PANTHER PTHR30411:SF1 8 155 3.6E-21 T 19-04-2016 AMED_2330 16b904c454a5f37f4acf59d7cf44c747 170 Pfam PF04073 Aminoacyl-tRNA editing domain 34 151 6.7E-25 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_2330 16b904c454a5f37f4acf59d7cf44c747 170 Gene3D G3DSA:3.90.960.10 8 160 7.8E-36 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_2330 16b904c454a5f37f4acf59d7cf44c747 170 SUPERFAMILY SSF55826 22 158 1.44E-28 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_1663 b52701a101be57f1912da607a88e4240 150 Gene3D G3DSA:3.40.630.30 3 149 1.2E-43 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1663 b52701a101be57f1912da607a88e4240 150 Pfam PF00583 Acetyltransferase (GNAT) family 60 140 5.3E-14 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1663 b52701a101be57f1912da607a88e4240 150 SUPERFAMILY SSF55729 3 144 7.93E-29 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1663 b52701a101be57f1912da607a88e4240 150 PANTHER PTHR23091 3 141 6.1E-19 T 19-04-2016 AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 PRINTS PR00502 NUDIX hydrolase family signature 51 66 3.2E-9 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 PRINTS PR00502 NUDIX hydrolase family signature 37 51 3.2E-9 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 SUPERFAMILY SSF55811 7 125 1.34E-34 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 Pfam PF00293 NUDIX domain 10 116 1.6E-19 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 PANTHER PTHR22769 9 124 1.1E-27 T 19-04-2016 AMED_1099 4e28f5ef21dcb95ac81ebf586bdb0fea 137 Gene3D G3DSA:3.90.79.10 8 130 1.2E-31 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_0039 3043c836f9d85a556f4acdde775d8f2b 352 Pfam PF04203 Sortase family 156 330 1.8E-26 T 19-04-2016 IPR005754 Sortase family AMED_0039 3043c836f9d85a556f4acdde775d8f2b 352 SUPERFAMILY SSF63817 134 238 1.02E-21 T 19-04-2016 IPR023365 Sortase domain AMED_0039 3043c836f9d85a556f4acdde775d8f2b 352 PANTHER PTHR33393 91 235 3.1E-13 T 19-04-2016 AMED_0039 3043c836f9d85a556f4acdde775d8f2b 352 Gene3D G3DSA:2.40.260.10 285 333 1.1E-21 T 19-04-2016 IPR023365 Sortase domain AMED_0039 3043c836f9d85a556f4acdde775d8f2b 352 Gene3D G3DSA:2.40.260.10 150 244 1.1E-21 T 19-04-2016 IPR023365 Sortase domain AMED_0039 3043c836f9d85a556f4acdde775d8f2b 352 PANTHER PTHR33393:SF3 91 235 3.1E-13 T 19-04-2016 AMED_9001 fb96bee5f8ed17fb420b188d5aab6a23 475 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 186 351 2.5E-43 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_9001 fb96bee5f8ed17fb420b188d5aab6a23 475 PANTHER PTHR33392:SF7 34 223 1.6E-83 T 19-04-2016 AMED_9001 fb96bee5f8ed17fb420b188d5aab6a23 475 PANTHER PTHR33392:SF7 240 437 1.6E-83 T 19-04-2016 AMED_9001 fb96bee5f8ed17fb420b188d5aab6a23 475 PANTHER PTHR33392 34 223 1.6E-83 T 19-04-2016 AMED_9001 fb96bee5f8ed17fb420b188d5aab6a23 475 PANTHER PTHR33392 240 437 1.6E-83 T 19-04-2016 AMED_9001 fb96bee5f8ed17fb420b188d5aab6a23 475 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 185 351 1.9E-49 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_4096 76493ee514f960275e00e8303ecebd7a 119 SUPERFAMILY SSF46785 2 104 4.0E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4096 76493ee514f960275e00e8303ecebd7a 119 PANTHER PTHR38600 2 117 4.9E-15 T 19-04-2016 AMED_4096 76493ee514f960275e00e8303ecebd7a 119 Gene3D G3DSA:1.10.10.10 3 107 3.8E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4096 76493ee514f960275e00e8303ecebd7a 119 PANTHER PTHR38600:SF1 2 117 4.9E-15 T 19-04-2016 AMED_4096 76493ee514f960275e00e8303ecebd7a 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 1.1E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4096 76493ee514f960275e00e8303ecebd7a 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 1.1E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4096 76493ee514f960275e00e8303ecebd7a 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 1.1E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4096 76493ee514f960275e00e8303ecebd7a 119 Pfam PF12840 Helix-turn-helix domain 10 65 9.5E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4096 76493ee514f960275e00e8303ecebd7a 119 SMART SM00418 10 87 1.2E-17 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_8435 0b56a7121422661930f516ab2a6845a5 512 SMART SM00944 3 135 1.5E-17 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_8435 0b56a7121422661930f516ab2a6845a5 512 Pfam PF09286 Pro-kumamolisin, activation domain 9 134 7.5E-8 T 19-04-2016 IPR015366 Peptidase S53, propeptide GO:0008236 AMED_8435 0b56a7121422661930f516ab2a6845a5 512 PANTHER PTHR14218 6 508 6.7E-52 T 19-04-2016 AMED_8435 0b56a7121422661930f516ab2a6845a5 512 PANTHER PTHR14218:SF15 6 508 6.7E-52 T 19-04-2016 AMED_8435 0b56a7121422661930f516ab2a6845a5 512 SUPERFAMILY SSF54897 3 147 2.04E-26 T 19-04-2016 IPR009020 Proteinase inhibitor, propeptide AMED_8435 0b56a7121422661930f516ab2a6845a5 512 SUPERFAMILY SSF52743 154 506 2.23E-63 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8435 0b56a7121422661930f516ab2a6845a5 512 Gene3D G3DSA:3.40.50.200 153 507 9.6E-97 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2221 5533f2a29e0c18ef3b71acf8e5d9062c 241 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 18 213 4.8E-25 T 19-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 AMED_2221 5533f2a29e0c18ef3b71acf8e5d9062c 241 SMART SM00464 17 213 2.1E-20 T 19-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 AMED_2221 5533f2a29e0c18ef3b71acf8e5d9062c 241 PANTHER PTHR23327 13 154 6.5E-22 T 19-04-2016 AMED_2221 5533f2a29e0c18ef3b71acf8e5d9062c 241 PANTHER PTHR23327:SF0 13 154 6.5E-22 T 19-04-2016 AMED_2221 5533f2a29e0c18ef3b71acf8e5d9062c 241 SUPERFAMILY SSF88697 18 212 1.09E-38 T 19-04-2016 IPR015947 PUA-like domain AMED_6988 c5c21f88762cedd3fec83efa36ac0331 386 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 6 134 1.4E-14 T 19-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMED_6988 c5c21f88762cedd3fec83efa36ac0331 386 SUPERFAMILY SSF51735 6 169 2.61E-15 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6988 c5c21f88762cedd3fec83efa36ac0331 386 PANTHER PTHR12286 1 384 3.8E-118 T 19-04-2016 AMED_6988 c5c21f88762cedd3fec83efa36ac0331 386 Gene3D G3DSA:3.40.50.720 6 164 1.5E-18 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6988 c5c21f88762cedd3fec83efa36ac0331 386 PANTHER PTHR12286:SF4 1 384 3.8E-118 T 19-04-2016 AMED_5578 f9d60e69a01ba00b74e539736f2132a1 218 PANTHER PTHR31299 1 208 4.2E-44 T 19-04-2016 AMED_5578 f9d60e69a01ba00b74e539736f2132a1 218 Gene3D G3DSA:3.40.50.2020 2 201 2.2E-25 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_5578 f9d60e69a01ba00b74e539736f2132a1 218 Pfam PF00156 Phosphoribosyl transferase domain 13 188 3.6E-16 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_5578 f9d60e69a01ba00b74e539736f2132a1 218 SUPERFAMILY SSF53271 1 208 5.58E-38 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_9366 510f0818e77ff93c1562754789944cb8 47 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 4 47 15.315 T 19-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9366 510f0818e77ff93c1562754789944cb8 47 Pfam PF00468 Ribosomal protein L34 5 47 3.1E-19 T 19-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9366 510f0818e77ff93c1562754789944cb8 47 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 5 47 3.6E-18 T 19-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9366 510f0818e77ff93c1562754789944cb8 47 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 5 25 3.0E-5 T 19-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9366 510f0818e77ff93c1562754789944cb8 47 PANTHER PTHR14503 5 47 1.2E-14 T 19-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_9366 510f0818e77ff93c1562754789944cb8 47 ProSitePatterns PS00784 Ribosomal protein L34 signature. 5 24 - T 19-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_4022 34a092c923c478e26ddade4ece8e2b56 308 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 219 307 8.0E-13 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_4022 34a092c923c478e26ddade4ece8e2b56 308 SUPERFAMILY SSF53901 156 308 6.29E-19 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4022 34a092c923c478e26ddade4ece8e2b56 308 Gene3D G3DSA:3.40.47.10 4 165 1.6E-7 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4022 34a092c923c478e26ddade4ece8e2b56 308 Gene3D G3DSA:3.40.47.10 166 307 4.7E-18 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4022 34a092c923c478e26ddade4ece8e2b56 308 SUPERFAMILY SSF53901 3 173 2.79E-8 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1787 f4f80d9fe8dc945a15870da845986418 704 PANTHER PTHR11070:SF25 425 701 5.5E-127 T 19-04-2016 AMED_1787 f4f80d9fe8dc945a15870da845986418 704 PANTHER PTHR11070 89 353 5.5E-127 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1787 f4f80d9fe8dc945a15870da845986418 704 SUPERFAMILY SSF52540 315 399 1.35E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1787 f4f80d9fe8dc945a15870da845986418 704 SUPERFAMILY SSF52540 468 699 1.35E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1787 f4f80d9fe8dc945a15870da845986418 704 SUPERFAMILY SSF52540 183 261 1.35E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1787 f4f80d9fe8dc945a15870da845986418 704 Pfam PF13245 Part of AAA domain 199 266 1.7E-13 T 19-04-2016 AMED_1787 f4f80d9fe8dc945a15870da845986418 704 Gene3D G3DSA:3.40.50.300 182 291 1.7E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1787 f4f80d9fe8dc945a15870da845986418 704 Gene3D G3DSA:3.40.50.300 466 560 1.7E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1787 f4f80d9fe8dc945a15870da845986418 704 PANTHER PTHR11070:SF25 89 353 5.5E-127 T 19-04-2016 AMED_1787 f4f80d9fe8dc945a15870da845986418 704 PANTHER PTHR11070 425 701 5.5E-127 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_1787 f4f80d9fe8dc945a15870da845986418 704 Gene3D G3DSA:3.40.50.300 561 696 1.4E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1787 f4f80d9fe8dc945a15870da845986418 704 Pfam PF13538 UvrD-like helicase C-terminal domain 653 693 6.9E-9 T 19-04-2016 IPR027785 UvrD-like helicase C-terminal domain AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Gene3D G3DSA:1.10.1670.10 430 481 5.0E-15 T 19-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Gene3D G3DSA:3.30.310.20 199 313 4.7E-34 T 19-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SUPERFAMILY SSF55945 198 294 2.98E-25 T 19-04-2016 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Pfam PF02805 Metal binding domain of Ada 8 71 9.4E-28 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 137 179 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SMART SM00478 323 478 1.8E-23 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 PANTHER PTHR10242:SF3 54 241 1.2E-103 T 19-04-2016 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 PANTHER PTHR10242:SF3 260 485 1.2E-103 T 19-04-2016 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Pfam PF12833 Helix-turn-helix domain 106 185 4.3E-16 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SUPERFAMILY SSF57884 3 82 2.62E-30 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SMART SM00342 100 183 1.1E-14 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Gene3D G3DSA:1.10.340.30 316 429 8.6E-33 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SUPERFAMILY SSF48150 304 475 1.54E-38 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Gene3D G3DSA:1.10.10.60 136 186 1.3E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 PANTHER PTHR10242 54 241 1.2E-103 T 19-04-2016 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 PANTHER PTHR10242 260 485 1.2E-103 T 19-04-2016 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SMART SM01009 198 313 1.1E-44 T 19-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Pfam PF06029 AlkA N-terminal domain 198 313 1.2E-29 T 19-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 Gene3D G3DSA:3.40.10.10 3 82 5.1E-33 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_4917 a3075fc005d65691d2dad5e1b6d3e1ee 487 SUPERFAMILY SSF46689 137 186 8.06E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PANTHER PTHR24322 9 177 9.1E-31 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 237 1.7E-40 T 19-04-2016 AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 3.8E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.8E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.8E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.8E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 3.8E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 3.8E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 Gene3D G3DSA:3.40.50.720 3 240 3.9E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8228 64ad75d8a508f1430c62268cf086be57 242 SUPERFAMILY SSF51735 4 240 3.17E-55 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.8E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.8E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_8228 64ad75d8a508f1430c62268cf086be57 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.8E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4276 4033106d7a3a4fafaa4196a5f767f9d9 285 Pfam PF04230 Polysaccharide pyruvyl transferase 182 222 1.8E-9 T 19-04-2016 IPR007345 Polysaccharide pyruvyl transferase AMED_5096 a66d6e015e85030720198453ffe0ea23 250 PANTHER PTHR24220:SF575 7 246 1.5E-70 T 19-04-2016 AMED_5096 a66d6e015e85030720198453ffe0ea23 250 Pfam PF00005 ABC transporter 21 172 3.5E-29 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5096 a66d6e015e85030720198453ffe0ea23 250 SUPERFAMILY SSF52540 5 231 1.05E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5096 a66d6e015e85030720198453ffe0ea23 250 Gene3D G3DSA:3.40.50.300 3 232 4.7E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5096 a66d6e015e85030720198453ffe0ea23 250 PANTHER PTHR24220 7 246 1.5E-70 T 19-04-2016 AMED_5096 a66d6e015e85030720198453ffe0ea23 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5096 a66d6e015e85030720198453ffe0ea23 250 SMART SM00382 30 221 3.2E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0376 88478e5d2e2b28ff538f918807068ae6 220 SUPERFAMILY SSF55729 99 193 5.67E-10 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0376 88478e5d2e2b28ff538f918807068ae6 220 Gene3D G3DSA:3.40.630.30 83 193 1.6E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4795 6cc4a662addc59d790642363a7a39c92 332 PANTHER PTHR10314:SF109 30 307 5.2E-67 T 19-04-2016 AMED_4795 6cc4a662addc59d790642363a7a39c92 332 TIGRFAM TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA 9 307 2.1E-110 T 19-04-2016 IPR023927 2,3-diaminopropionate biosynthesis protein SbnA AMED_4795 6cc4a662addc59d790642363a7a39c92 332 PANTHER PTHR10314 30 307 5.2E-67 T 19-04-2016 AMED_4795 6cc4a662addc59d790642363a7a39c92 332 Gene3D G3DSA:3.40.50.1100 137 306 4.2E-45 T 19-04-2016 AMED_4795 6cc4a662addc59d790642363a7a39c92 332 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 289 4.4E-49 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4795 6cc4a662addc59d790642363a7a39c92 332 SUPERFAMILY SSF53686 23 308 1.96E-67 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4795 6cc4a662addc59d790642363a7a39c92 332 Gene3D G3DSA:3.40.50.1100 35 136 3.9E-22 T 19-04-2016 AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 51 136 3.1E-5 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 Gene3D G3DSA:3.30.360.10 152 372 2.1E-39 T 19-04-2016 AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 PANTHER PTHR22604:SF139 52 379 8.8E-145 T 19-04-2016 AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 150 234 1.5E-4 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 Gene3D G3DSA:3.40.50.720 50 151 3.7E-18 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 SUPERFAMILY SSF51735 50 171 1.36E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 PANTHER PTHR22604 52 379 8.8E-145 T 19-04-2016 AMED_1679 f223ddb22be1045e29354a00f8b6d792 380 SUPERFAMILY SSF55347 144 343 3.01E-32 T 19-04-2016 AMED_1301 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 Pfam PF03358 NADPH-dependent FMN reductase 1 150 8.2E-34 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_1301 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 PANTHER PTHR30543 1 176 1.3E-64 T 19-04-2016 AMED_1301 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 TIGRFAM TIGR04037 LLM_duo_CE1759: LLM-partnered FMN reductase, CE1759 family 3 191 1.2E-78 T 19-04-2016 IPR023932 Uncharacterised protein family, CE1759 AMED_1301 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 Gene3D G3DSA:3.40.50.360 1 173 8.5E-33 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_1301 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 SUPERFAMILY SSF52218 1 158 4.51E-26 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_1301 64f8e798fbcec3d0c1d2d6142e1e0b2f 195 PANTHER PTHR30543:SF8 1 176 1.3E-64 T 19-04-2016 AMED_7978 fd81501ff132e2a0c152a7d0fca55d2e 252 PANTHER PTHR13604 2 243 1.3E-73 T 19-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_7978 fd81501ff132e2a0c152a7d0fca55d2e 252 Gene3D G3DSA:3.90.1680.10 1 237 9.2E-71 T 19-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_7978 fd81501ff132e2a0c152a7d0fca55d2e 252 SUPERFAMILY SSF143081 2 238 3.4E-66 T 19-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_7978 fd81501ff132e2a0c152a7d0fca55d2e 252 Pfam PF02586 SOS response associated peptidase (SRAP) 1 227 1.3E-68 T 19-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 SMART SM00857 101 253 7.2E-44 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 Pfam PF00239 Resolvase, N terminal domain 101 252 7.7E-32 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 PANTHER PTHR30461 101 545 5.5E-46 T 19-04-2016 AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 Pfam PF07508 Recombinase 280 371 5.9E-8 T 19-04-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 SUPERFAMILY SSF53041 101 251 1.31E-29 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 PANTHER PTHR30461:SF3 101 545 5.5E-46 T 19-04-2016 AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 Pfam PF13408 Recombinase zinc beta ribbon domain 386 444 1.6E-8 T 19-04-2016 IPR025827 Recombinase zinc beta ribbon domain AMED_2116 7c5e516786e1f5686026c16bafadcb2f 644 Gene3D G3DSA:3.40.50.1390 101 232 5.1E-26 T 19-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMED_8221 ceec66d93f371d74bf84d9bde1471d8c 257 PANTHER PTHR10245:SF17 1 184 1.1E-37 T 19-04-2016 AMED_8221 ceec66d93f371d74bf84d9bde1471d8c 257 Gene3D G3DSA:1.10.260.40 3 58 1.9E-11 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8221 ceec66d93f371d74bf84d9bde1471d8c 257 PANTHER PTHR10245 1 184 1.1E-37 T 19-04-2016 AMED_8221 ceec66d93f371d74bf84d9bde1471d8c 257 SMART SM00530 6 61 3.8E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8221 ceec66d93f371d74bf84d9bde1471d8c 257 Pfam PF13560 Helix-turn-helix domain 3 63 7.9E-9 T 19-04-2016 AMED_8221 ceec66d93f371d74bf84d9bde1471d8c 257 SUPERFAMILY SSF47413 2 60 8.31E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0515 d465a12835ace7ff7eb7b91b98a9357b 367 PANTHER PTHR12526 2 364 1.7E-39 T 19-04-2016 AMED_0515 d465a12835ace7ff7eb7b91b98a9357b 367 Pfam PF00534 Glycosyl transferases group 1 200 349 1.7E-26 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_0515 d465a12835ace7ff7eb7b91b98a9357b 367 Gene3D G3DSA:3.40.50.2000 169 349 5.6E-24 T 19-04-2016 AMED_0515 d465a12835ace7ff7eb7b91b98a9357b 367 Pfam PF13579 Glycosyl transferase 4-like domain 15 175 2.4E-15 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_0515 d465a12835ace7ff7eb7b91b98a9357b 367 SUPERFAMILY SSF53756 4 363 5.14E-61 T 19-04-2016 AMED_8408 2a7ef6e3d6e022c2984fbdfc40a22e24 298 PANTHER PTHR30193:SF6 1 293 1.6E-66 T 19-04-2016 AMED_8408 2a7ef6e3d6e022c2984fbdfc40a22e24 298 PANTHER PTHR30193 1 293 1.6E-66 T 19-04-2016 AMED_8408 2a7ef6e3d6e022c2984fbdfc40a22e24 298 SUPERFAMILY SSF161098 4 295 4.19E-41 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8408 2a7ef6e3d6e022c2984fbdfc40a22e24 298 Gene3D G3DSA:1.10.3720.10 57 293 1.1E-46 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8408 2a7ef6e3d6e022c2984fbdfc40a22e24 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 289 3.0E-6 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3688 ce794465591161bc91992e9c2c92c572 143 SMART SM00900 64 141 1.6E-13 T 19-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 AMED_3688 ce794465591161bc91992e9c2c92c572 143 Pfam PF04205 FMN-binding domain 66 138 4.4E-9 T 19-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 PANTHER PTHR30411:SF0 6 156 6.6E-60 T 19-04-2016 AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 Pfam PF04073 Aminoacyl-tRNA editing domain 36 148 1.0E-26 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 PANTHER PTHR30411 6 156 6.6E-60 T 19-04-2016 AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 Gene3D G3DSA:3.90.960.10 5 156 1.8E-58 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 PIRSF PIRSF006181 1 158 1.4E-49 T 19-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 SUPERFAMILY SSF55826 6 156 1.12E-43 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_7976 5f7981e828ed898fbd934e2fb99a3633 158 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 6 156 1.1E-51 T 19-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMED_0872 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 PANTHER PTHR30406:SF2 1 309 2.9E-95 T 19-04-2016 AMED_0872 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 Gene3D G3DSA:1.10.3720.10 27 295 2.1E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0872 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 SUPERFAMILY SSF161098 72 292 7.59E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0872 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 299 2.4E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0872 fe3c6834a5a4d14a42bc1c3ea50ca65b 310 PANTHER PTHR30406 1 309 2.9E-95 T 19-04-2016 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 61 2.8E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 SUPERFAMILY SSF46689 6 76 2.72E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 PANTHER PTHR30055 1 175 2.0E-19 T 19-04-2016 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 Gene3D G3DSA:1.10.357.10 6 184 2.2E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 4.8E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 4.8E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 SUPERFAMILY SSF48498 81 186 6.23E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5708 bcdc73cad29bbc7749355b903f6df331 196 PANTHER PTHR30055:SF47 1 175 2.0E-19 T 19-04-2016 AMED_2725 30708b5d995e0bf9112d3584afab875e 410 Pfam PF02378 Phosphotransferase system, EIIC 24 327 5.9E-69 T 19-04-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AMED_2725 30708b5d995e0bf9112d3584afab875e 410 PANTHER PTHR30009:SF4 16 401 7.1E-132 T 19-04-2016 AMED_2725 30708b5d995e0bf9112d3584afab875e 410 PANTHER PTHR30009 16 401 7.1E-132 T 19-04-2016 AMED_8049 888e4fc95a529ce85582a274401e421f 63 Pfam PF08410 Domain of unknown function (DUF1737) 11 56 8.0E-22 T 19-04-2016 IPR013619 Domain of unknown function DUF1737 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 Pfam PF02602 Uroporphyrinogen-III synthase HemD 21 262 8.5E-37 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 SMART SM00862 294 363 1.8E-14 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 Gene3D G3DSA:1.10.10.10 273 365 1.2E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 PANTHER PTHR40082 1 279 2.8E-28 T 19-04-2016 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 Pfam PF00486 Transcriptional regulatory protein, C terminal 301 363 2.0E-11 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 SUPERFAMILY SSF69618 9 268 1.57E-53 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 Gene3D G3DSA:3.40.50.10090 6 134 2.5E-29 T 19-04-2016 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 Gene3D G3DSA:3.40.50.10090 137 269 6.5E-30 T 19-04-2016 AMED_1126 43c496299e10ae48f93e8dc17d3437ea 367 SUPERFAMILY SSF46894 273 365 1.13E-13 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 SUPERFAMILY SSF51735 109 272 5.37E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 SUPERFAMILY SSF50129 4 137 5.63E-36 T 19-04-2016 IPR011032 GroES-like AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 SMART SM00829 11 320 6.2E-22 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 92 3.7E-9 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 138 159 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 PANTHER PTHR11695 16 322 2.6E-118 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 Pfam PF00107 Zinc-binding dehydrogenase 149 253 6.1E-30 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 Gene3D G3DSA:3.40.50.720 145 250 8.1E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 Gene3D G3DSA:3.90.180.10 3 144 5.4E-39 T 19-04-2016 IPR011032 GroES-like AMED_2818 8ab90d699020f80aa48ec652a9844a82 322 PANTHER PTHR11695:SF605 16 322 2.6E-118 T 19-04-2016 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 Gene3D G3DSA:1.10.357.10 78 220 7.2E-52 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 SUPERFAMILY SSF48498 82 220 7.34E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 PANTHER PTHR30055:SF90 1 102 3.7E-20 T 19-04-2016 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 3.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 Gene3D G3DSA:1.10.10.60 3 71 1.2E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 PANTHER PTHR30055 1 102 3.7E-20 T 19-04-2016 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 82 220 5.3E-6 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_2376 830322306bc9d2a377ca5de0e66331bb 221 SUPERFAMILY SSF46689 7 72 3.54E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1721 dc8dda376d2cc951ca6ba92a1809a7b0 235 Gene3D G3DSA:3.60.15.10 3 221 2.1E-32 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1721 dc8dda376d2cc951ca6ba92a1809a7b0 235 Pfam PF00753 Metallo-beta-lactamase superfamily 19 197 5.7E-17 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1721 dc8dda376d2cc951ca6ba92a1809a7b0 235 PANTHER PTHR11935 9 221 1.8E-19 T 19-04-2016 AMED_1721 dc8dda376d2cc951ca6ba92a1809a7b0 235 PANTHER PTHR11935:SF95 9 221 1.8E-19 T 19-04-2016 AMED_1721 dc8dda376d2cc951ca6ba92a1809a7b0 235 SMART SM00849 18 197 3.7E-11 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1721 dc8dda376d2cc951ca6ba92a1809a7b0 235 SUPERFAMILY SSF56281 4 220 4.06E-32 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8761 231fb3c0bf347b791cbe6b04d10152ac 172 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 121 1.4E-7 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_8761 231fb3c0bf347b791cbe6b04d10152ac 172 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 44 4.9E-5 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_8761 231fb3c0bf347b791cbe6b04d10152ac 172 Gene3D G3DSA:2.160.10.10 6 166 1.3E-43 T 19-04-2016 AMED_8761 231fb3c0bf347b791cbe6b04d10152ac 172 PANTHER PTHR13061 6 171 9.5E-56 T 19-04-2016 AMED_8761 231fb3c0bf347b791cbe6b04d10152ac 172 SUPERFAMILY SSF51161 1 166 1.21E-43 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_7002 b424c2e36e4e70281845c00b4cfd1e51 225 Pfam PF01738 Dienelactone hydrolase family 13 222 1.1E-46 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_7002 b424c2e36e4e70281845c00b4cfd1e51 225 Gene3D G3DSA:3.40.50.1820 11 223 2.3E-46 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7002 b424c2e36e4e70281845c00b4cfd1e51 225 SUPERFAMILY SSF53474 13 223 1.95E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7002 b424c2e36e4e70281845c00b4cfd1e51 225 PANTHER PTHR17630 15 223 2.7E-38 T 19-04-2016 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 PANTHER PTHR11908 1 282 2.3E-85 T 19-04-2016 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 SUPERFAMILY SSF56176 2 174 9.54E-58 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 PANTHER PTHR11908:SF68 1 282 2.3E-85 T 19-04-2016 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 SUPERFAMILY SSF55447 177 283 2.09E-27 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 174 1.3E-52 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 Gene3D G3DSA:3.30.390.50 178 283 2.3E-29 T 19-04-2016 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 Gene3D G3DSA:3.30.465.10 58 174 2.4E-38 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 SMART SM01092 180 281 4.4E-29 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 Gene3D G3DSA:3.30.43.10 2 54 4.2E-23 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_1872 218ba926c896f566d6f4e0c3326eaf3a 284 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 280 5.4E-21 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_1633 23559c7bcc2239827361eb675a275859 189 PANTHER PTHR11079:SF10 94 181 4.9E-23 T 19-04-2016 AMED_1633 23559c7bcc2239827361eb675a275859 189 Pfam PF08719 Domain of unknown function (DUF1768) 40 186 2.3E-51 T 19-04-2016 IPR012816 Conserved hypothetical protein CHP02464 AMED_1633 23559c7bcc2239827361eb675a275859 189 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 27 185 2.2E-48 T 19-04-2016 IPR012816 Conserved hypothetical protein CHP02464 AMED_1633 23559c7bcc2239827361eb675a275859 189 PANTHER PTHR11079 94 181 4.9E-23 T 19-04-2016 AMED_1633 23559c7bcc2239827361eb675a275859 189 SUPERFAMILY SSF143990 18 187 5.89E-52 T 19-04-2016 AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PANTHER PTHR24322 10 130 9.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PANTHER PTHR24322 146 178 9.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 Gene3D G3DSA:3.40.50.720 2 241 4.3E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 177 0.0012 T 19-04-2016 AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.1E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.1E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.1E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.1E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.1E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 241 1.2E-51 T 19-04-2016 AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 SUPERFAMILY SSF51735 4 241 2.7E-66 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 2.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 2.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0957 7727d8803c24414b19ebf6d9100ce509 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_9093 4aa3aeff7093efd6429384158486664e 243 SUPERFAMILY SSF142695 1 164 1.24E-35 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_9093 4aa3aeff7093efd6429384158486664e 243 PANTHER PTHR21327:SF6 1 217 2.1E-49 T 19-04-2016 AMED_9093 4aa3aeff7093efd6429384158486664e 243 PANTHER PTHR21327 1 217 2.1E-49 T 19-04-2016 AMED_9093 4aa3aeff7093efd6429384158486664e 243 Pfam PF00925 GTP cyclohydrolase II 4 162 7.8E-42 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 Pfam PF00553 Cellulose binding domain 530 616 3.8E-22 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 SUPERFAMILY SSF49384 525 619 2.65E-27 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 SMART SM00637 530 622 3.4E-31 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 SUPERFAMILY SSF51445 34 117 4.95E-22 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7833 13a7d9726b525f4400f29319a828ef32 625 SUPERFAMILY SSF51445 155 405 4.95E-22 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7833 13a7d9726b525f4400f29319a828ef32 625 Gene3D G3DSA:3.20.20.80 166 379 1.9E-8 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 Gene3D G3DSA:2.60.40.290 528 621 2.1E-28 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 Pfam PF12891 Glycoside hydrolase family 44 74 307 2.6E-70 T 19-04-2016 IPR024745 Glycoside hydrolase, family 44 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_7833 13a7d9726b525f4400f29319a828ef32 625 Gene3D G3DSA:2.60.40.1180 429 524 3.0E-5 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_3513 440dfa4f841f91224a14adce74e0e181 196 PANTHER PTHR36933:SF1 36 195 5.8E-33 T 19-04-2016 AMED_3513 440dfa4f841f91224a14adce74e0e181 196 Gene3D G3DSA:1.20.1260.10 38 194 2.8E-58 T 19-04-2016 IPR012347 Ferritin-related AMED_3513 440dfa4f841f91224a14adce74e0e181 196 PANTHER PTHR36933 36 195 5.8E-33 T 19-04-2016 AMED_3513 440dfa4f841f91224a14adce74e0e181 196 Pfam PF03713 Domain of unknown function (DUF305) 46 193 1.7E-54 T 19-04-2016 IPR005183 Domain of unknown function DUF305 AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 SMART SM00880 223 486 3.7E-59 T 19-04-2016 IPR007899 CHAD domain AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 Pfam PF05235 CHAD domain 223 453 1.4E-46 T 19-04-2016 IPR007899 CHAD domain AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 PANTHER PTHR39339 2 497 7.6E-54 T 19-04-2016 AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 PANTHER PTHR39339:SF1 2 497 7.6E-54 T 19-04-2016 AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 SMART SM01118 7 206 1.6E-10 T 19-04-2016 IPR023577 CYTH domain AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 Pfam PF01928 CYTH domain 9 198 3.8E-9 T 19-04-2016 IPR023577 CYTH domain AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 SUPERFAMILY SSF55154 7 209 4.14E-36 T 19-04-2016 IPR033469 CYTH-like domain AMED_5214 789075dbf0d036b8b5a7d180a9a83adf 505 Gene3D G3DSA:2.40.320.10 6 210 3.8E-45 T 19-04-2016 IPR023577 CYTH domain AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PANTHER PTHR11712 11 391 1.9E-74 T 19-04-2016 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 90 101 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 193 215 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 140 156 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 293 320 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 321 336 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 157 172 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 351 362 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 342 351 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00359 B-class P450 signature 275 286 5.2E-48 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 Gene3D G3DSA:1.10.630.10 10 394 2.0E-106 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 Pfam PF00067 Cytochrome P450 276 372 1.7E-17 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00385 P450 superfamily signature 351 362 1.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00385 P450 superfamily signature 275 286 1.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 PRINTS PR00385 P450 superfamily signature 239 256 1.0E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_4238 6f7da5b75c45169a33259ec4e386d1a6 408 SUPERFAMILY SSF48264 11 391 5.76E-82 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2013 a7c68b18c4802a8ef1dcb4a512a41828 271 PANTHER PTHR14194 3 271 2.8E-63 T 19-04-2016 AMED_2013 a7c68b18c4802a8ef1dcb4a512a41828 271 PANTHER PTHR14194:SF21 3 271 2.8E-63 T 19-04-2016 AMED_2013 a7c68b18c4802a8ef1dcb4a512a41828 271 SUPERFAMILY SSF51735 3 264 2.36E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2013 a7c68b18c4802a8ef1dcb4a512a41828 271 Pfam PF13460 NAD(P)H-binding 6 167 6.9E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2013 a7c68b18c4802a8ef1dcb4a512a41828 271 Gene3D G3DSA:3.40.50.720 2 203 7.4E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 SMART SM00478 37 189 7.7E-39 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 PANTHER PTHR10359 8 209 2.3E-59 T 19-04-2016 AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 Gene3D G3DSA:1.10.340.30 19 120 9.9E-35 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 Gene3D G3DSA:1.10.1670.10 121 216 1.1E-34 T 19-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 Pfam PF00633 Helix-hairpin-helix motif 98 126 7.0E-7 T 19-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 SUPERFAMILY SSF48150 5 217 4.08E-63 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 33 146 2.1E-14 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMED_8702 bf3dd47135bd62237bc67e4e7090cba7 291 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 191 207 2.0E-4 T 19-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 AMED_6454 e5cae686fa76048b1d2f9d8231f527f0 91 SUPERFAMILY SSF54593 13 79 1.29E-6 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6454 e5cae686fa76048b1d2f9d8231f527f0 91 Gene3D G3DSA:3.10.180.10 30 80 2.0E-4 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8005 c1a81014a2a750965dc9d825eaf394f8 95 Gene3D G3DSA:1.10.1220.10 3 45 2.0E-8 T 19-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMED_8005 c1a81014a2a750965dc9d825eaf394f8 95 SUPERFAMILY SSF47598 2 46 8.53E-11 T 19-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 AMED_8005 c1a81014a2a750965dc9d825eaf394f8 95 Pfam PF05534 HicB family 4 35 1.4E-7 T 19-04-2016 IPR008651 Uncharacterised protein family HicB AMED_2425 615044ae6f401ce23f65977aec225085 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 3.1E-64 T 19-04-2016 AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.4E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2425 615044ae6f401ce23f65977aec225085 252 Gene3D G3DSA:3.40.50.720 1 246 2.9E-83 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2425 615044ae6f401ce23f65977aec225085 252 PANTHER PTHR24321:SF6 1 246 1.1E-52 T 19-04-2016 AMED_2425 615044ae6f401ce23f65977aec225085 252 PANTHER PTHR24321 1 246 1.1E-52 T 19-04-2016 AMED_2425 615044ae6f401ce23f65977aec225085 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_2425 615044ae6f401ce23f65977aec225085 252 SUPERFAMILY SSF51735 4 246 6.08E-78 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4338 f0595f83cd9dc52811569656694ff465 327 Gene3D G3DSA:1.20.1050.10 150 266 4.5E-23 T 19-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like AMED_4338 f0595f83cd9dc52811569656694ff465 327 Gene3D G3DSA:3.40.30.10 17 149 9.3E-12 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4338 f0595f83cd9dc52811569656694ff465 327 Pfam PF13409 Glutathione S-transferase, N-terminal domain 40 128 8.0E-8 T 19-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMED_4338 f0595f83cd9dc52811569656694ff465 327 PANTHER PTHR32419:SF6 1 320 1.5E-130 T 19-04-2016 AMED_4338 f0595f83cd9dc52811569656694ff465 327 PANTHER PTHR32419 1 320 1.5E-130 T 19-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 AMED_4338 f0595f83cd9dc52811569656694ff465 327 SUPERFAMILY SSF52833 17 89 4.25E-5 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_4338 f0595f83cd9dc52811569656694ff465 327 SUPERFAMILY SSF47616 154 320 1.81E-34 T 19-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like AMED_4338 f0595f83cd9dc52811569656694ff465 327 Pfam PF13410 Glutathione S-transferase, C-terminal domain 181 250 2.7E-12 T 19-04-2016 AMED_4338 f0595f83cd9dc52811569656694ff465 327 PIRSF PIRSF015753 1 301 2.1E-106 T 19-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 AMED_3897 547d1f620319b9f458b26a765deb7944 316 Pfam PF01546 Peptidase family M20/M25/M40 86 210 5.3E-25 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_3897 547d1f620319b9f458b26a765deb7944 316 Gene3D G3DSA:3.30.70.360 208 306 1.3E-18 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_3897 547d1f620319b9f458b26a765deb7944 316 PANTHER PTHR11014 6 298 6.2E-75 T 19-04-2016 AMED_3897 547d1f620319b9f458b26a765deb7944 316 PANTHER PTHR11014:SF15 6 298 6.2E-75 T 19-04-2016 AMED_3897 547d1f620319b9f458b26a765deb7944 316 SUPERFAMILY SSF53187 4 234 2.86E-43 T 19-04-2016 AMED_3897 547d1f620319b9f458b26a765deb7944 316 Gene3D G3DSA:3.40.630.10 11 207 4.8E-50 T 19-04-2016 AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 Gene3D G3DSA:3.30.450.40 17 182 1.5E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 PIRSF PIRSF036625 6 243 1.1E-56 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 Pfam PF03861 ANTAR domain 182 233 3.6E-18 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 Pfam PF13185 GAF domain 33 165 9.9E-15 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 SMART SM01012 179 234 3.1E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 SMART SM00065 31 177 2.4E-8 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 SUPERFAMILY SSF55781 33 180 9.81E-22 T 19-04-2016 IPR029016 GAF domain-like AMED_5893 a5b99c6755d3a9036edeed73d94525f4 243 Gene3D G3DSA:1.10.10.10 183 238 7.8E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3275 c4e03b7ed78da25742e9e6168f9da82a 311 Gene3D G3DSA:3.40.50.720 8 301 5.2E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3275 c4e03b7ed78da25742e9e6168f9da82a 311 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 207 4.1E-9 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_3275 c4e03b7ed78da25742e9e6168f9da82a 311 SUPERFAMILY SSF51735 7 307 1.87E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8920 973faa5e640b2cb30ed4ad43de3e0036 274 SUPERFAMILY SSF53335 21 229 1.66E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8920 973faa5e640b2cb30ed4ad43de3e0036 274 PANTHER PTHR12176:SF22 12 238 5.6E-54 T 19-04-2016 AMED_8920 973faa5e640b2cb30ed4ad43de3e0036 274 Gene3D G3DSA:3.40.50.150 8 261 1.8E-56 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8920 973faa5e640b2cb30ed4ad43de3e0036 274 PANTHER PTHR12176 12 238 5.6E-54 T 19-04-2016 AMED_8121 6f2e5d8201c2ad9b1947fcd348b27866 274 PANTHER PTHR32243:SF31 2 271 1.2E-92 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_8121 6f2e5d8201c2ad9b1947fcd348b27866 274 PANTHER PTHR32243 2 271 1.2E-92 T 19-04-2016 AMED_8121 6f2e5d8201c2ad9b1947fcd348b27866 274 Gene3D G3DSA:1.10.3720.10 4 261 5.6E-50 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8121 6f2e5d8201c2ad9b1947fcd348b27866 274 SUPERFAMILY SSF161098 4 272 1.27E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8121 6f2e5d8201c2ad9b1947fcd348b27866 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 268 4.1E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2314 199a73b029c705bd050256ac82888fe6 416 PANTHER PTHR31650 1 416 4.4E-66 T 19-04-2016 AMED_2314 199a73b029c705bd050256ac82888fe6 416 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 1 415 1.8E-101 T 19-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_2314 199a73b029c705bd050256ac82888fe6 416 Pfam PF06974 Protein of unknown function (DUF1298) 267 408 4.2E-22 T 19-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_2314 199a73b029c705bd050256ac82888fe6 416 SUPERFAMILY SSF52777 186 395 4.0E-5 T 19-04-2016 AMED_2314 199a73b029c705bd050256ac82888fe6 416 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 1 225 4.9E-38 T 19-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_2314 199a73b029c705bd050256ac82888fe6 416 SUPERFAMILY SSF52777 6 156 6.34E-12 T 19-04-2016 AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.30 898 995 2.3E-17 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF00092 von Willebrand factor type A domain 503 660 1.1E-8 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 SUPERFAMILY SSF82171 905 989 1.69E-10 T 19-04-2016 AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 PANTHER PTHR32161 214 276 2.1E-12 T 19-04-2016 AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 PANTHER PTHR32161 111 186 2.1E-12 T 19-04-2016 AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:3.40.50.410 503 632 1.1E-16 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 382 411 0.037 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 113 147 4.2E-6 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 155 191 9.4E-11 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 245 275 9.7E-5 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Pfam PF07676 WD40-like Beta Propeller Repeat 331 356 1.6E-4 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 SMART SM00327 501 698 3.9E-7 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.60 98 270 1.7E-39 T 19-04-2016 AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 Gene3D G3DSA:2.120.10.60 296 456 3.1E-20 T 19-04-2016 AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 SUPERFAMILY SSF53300 503 662 1.63E-19 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_4829 6fe26e42c815eae7a75f8f07b664c156 1342 SUPERFAMILY SSF82171 101 459 2.98E-42 T 19-04-2016 AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 Gene3D G3DSA:3.40.50.1000 2 14 1.2E-38 T 19-04-2016 IPR023214 HAD-like domain AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 Gene3D G3DSA:3.40.50.1000 87 209 1.2E-38 T 19-04-2016 IPR023214 HAD-like domain AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 2.7E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 124 140 2.7E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 162 2.7E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 180 1.3E-21 T 19-04-2016 IPR023214 HAD-like domain AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 SUPERFAMILY SSF56784 1 209 1.76E-50 T 19-04-2016 IPR023214 HAD-like domain AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 Gene3D G3DSA:1.10.150.240 15 78 2.3E-4 T 19-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 47 179 4.0E-16 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9281 028f4d419c18bbb91c8a0ee1a29c27a8 212 PANTHER PTHR18901 1 205 6.9E-48 T 19-04-2016 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 Gene3D G3DSA:3.20.20.140 11 272 3.4E-84 T 19-04-2016 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 Pfam PF01026 TatD related DNase 20 270 1.9E-69 T 19-04-2016 IPR001130 TatD family GO:0016788 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 PIRSF PIRSF005902 11 275 4.8E-73 T 19-04-2016 IPR001130 TatD family GO:0016788 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 SUPERFAMILY SSF51556 19 272 9.03E-78 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 19 271 1.7E-78 T 19-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 143 153 - T 19-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 PANTHER PTHR10060:SF20 11 274 1.6E-109 T 19-04-2016 AMED_8250 0c9f2e3afd546b6e2a4c10b46ab1ca7d 278 PANTHER PTHR10060 11 274 1.6E-109 T 19-04-2016 IPR001130 TatD family GO:0016788 AMED_4234 4039fcb8969541a052beae58d2ba7d7a 166 SUPERFAMILY SSF141523 61 165 4.45E-19 T 19-04-2016 AMED_4234 4039fcb8969541a052beae58d2ba7d7a 166 Gene3D G3DSA:2.40.440.10 60 165 1.5E-12 T 19-04-2016 AMED_4234 4039fcb8969541a052beae58d2ba7d7a 166 Pfam PF03734 L,D-transpeptidase catalytic domain 62 165 1.3E-14 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_4234 4039fcb8969541a052beae58d2ba7d7a 166 PANTHER PTHR30582:SF2 63 165 1.1E-13 T 19-04-2016 AMED_4234 4039fcb8969541a052beae58d2ba7d7a 166 PANTHER PTHR30582 63 165 1.1E-13 T 19-04-2016 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 PIRSF PIRSF002599 1 68 1.6E-22 T 19-04-2016 IPR012156 Cold shock, CspA GO:0003676 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 19-04-2016 IPR019844 Cold-shock conserved site AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 4.7E-28 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 SUPERFAMILY SSF50249 2 66 8.0E-23 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 PRINTS PR00050 Cold shock protein signature 24 33 8.6E-18 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 PRINTS PR00050 Cold shock protein signature 4 19 8.6E-18 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 PRINTS PR00050 Cold shock protein signature 39 57 8.6E-18 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 SMART SM00357 3 67 1.2E-28 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 PANTHER PTHR11544 4 67 9.5E-29 T 19-04-2016 AMED_8556 b06811dc5c49d714e9931d6347b5dea2 68 Gene3D G3DSA:2.40.50.140 3 65 3.4E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2871 122e8ced10872516f391a0b62d56c665 400 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 165 312 1.4E-39 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_2871 122e8ced10872516f391a0b62d56c665 400 PANTHER PTHR33392 17 393 4.7E-78 T 19-04-2016 AMED_2871 122e8ced10872516f391a0b62d56c665 400 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 165 312 4.2E-43 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_2871 122e8ced10872516f391a0b62d56c665 400 PANTHER PTHR33392:SF6 17 393 4.7E-78 T 19-04-2016 AMED_8581 bfbc2b7c91d05de936a49263dd7c6aa7 316 SUPERFAMILY SSF53686 5 310 2.49E-88 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8581 bfbc2b7c91d05de936a49263dd7c6aa7 316 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 33 302 1.4E-78 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_8581 bfbc2b7c91d05de936a49263dd7c6aa7 316 Gene3D G3DSA:3.40.50.1100 68 314 7.3E-74 T 19-04-2016 AMED_8581 bfbc2b7c91d05de936a49263dd7c6aa7 316 PANTHER PTHR10314:SF36 1 314 2.1E-106 T 19-04-2016 AMED_8581 bfbc2b7c91d05de936a49263dd7c6aa7 316 PANTHER PTHR10314 1 314 2.1E-106 T 19-04-2016 AMED_2873 45bfa1cc45fbf8e71f0acce1dbac6e42 153 Pfam PF00578 AhpC/TSA family 4 127 7.6E-34 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_2873 45bfa1cc45fbf8e71f0acce1dbac6e42 153 SUPERFAMILY SSF52833 3 148 1.7E-45 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2873 45bfa1cc45fbf8e71f0acce1dbac6e42 153 PANTHER PTHR10681:SF72 1 147 1.4E-61 T 19-04-2016 AMED_2873 45bfa1cc45fbf8e71f0acce1dbac6e42 153 PIRSF PIRSF000239 1 152 6.2E-21 T 19-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 AMED_2873 45bfa1cc45fbf8e71f0acce1dbac6e42 153 Gene3D G3DSA:3.40.30.10 3 148 5.8E-42 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2873 45bfa1cc45fbf8e71f0acce1dbac6e42 153 PANTHER PTHR10681 1 147 1.4E-61 T 19-04-2016 AMED_6720 e2b8b8ade12db1fcb7bf6786e1e418a7 289 PANTHER PTHR37981:SF3 13 258 1.4E-28 T 19-04-2016 AMED_6720 e2b8b8ade12db1fcb7bf6786e1e418a7 289 PANTHER PTHR37981 13 258 1.4E-28 T 19-04-2016 AMED_6720 e2b8b8ade12db1fcb7bf6786e1e418a7 289 SUPERFAMILY SSF52266 29 289 2.66E-59 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6720 e2b8b8ade12db1fcb7bf6786e1e418a7 289 Gene3D G3DSA:3.40.50.1110 26 288 1.4E-73 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6720 e2b8b8ade12db1fcb7bf6786e1e418a7 289 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 277 8.0E-26 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_1918 3b48cdd2be7d535925c089bdda6fc62e 440 PANTHER PTHR33744 1 438 4.7E-35 T 19-04-2016 AMED_1918 3b48cdd2be7d535925c089bdda6fc62e 440 PANTHER PTHR33744:SF3 1 438 4.7E-35 T 19-04-2016 AMED_1918 3b48cdd2be7d535925c089bdda6fc62e 440 Pfam PF13556 PucR C-terminal helix-turn-helix domain 380 438 2.6E-22 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_1918 3b48cdd2be7d535925c089bdda6fc62e 440 Gene3D G3DSA:1.10.10.60 382 414 1.3E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1918 3b48cdd2be7d535925c089bdda6fc62e 440 Pfam PF07905 Purine catabolism regulatory protein-like family 7 120 2.1E-24 T 19-04-2016 IPR012914 Purine catabolism PurC-like domain AMED_3676 0baf7f4e9896a46064d0942bf3859d6a 363 PANTHER PTHR34983 17 334 1.9E-64 T 19-04-2016 AMED_3676 0baf7f4e9896a46064d0942bf3859d6a 363 Gene3D G3DSA:3.20.20.80 48 338 1.8E-80 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3676 0baf7f4e9896a46064d0942bf3859d6a 363 Pfam PF07745 Glycosyl hydrolase family 53 63 336 1.4E-57 T 19-04-2016 IPR011683 Glycosyl hydrolase family 53 GO:0015926 AMED_3676 0baf7f4e9896a46064d0942bf3859d6a 363 SUPERFAMILY SSF51445 59 334 5.66E-58 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 Pfam PF03861 ANTAR domain 184 236 1.4E-19 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 SMART SM00065 29 180 6.9E-9 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 Pfam PF13185 GAF domain 33 170 7.9E-11 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 SUPERFAMILY SSF52172 164 236 1.14E-10 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 SMART SM01012 182 237 6.4E-22 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 PIRSF PIRSF036625 2 246 1.2E-48 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 SUPERFAMILY SSF55781 36 181 3.93E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 Gene3D G3DSA:1.10.10.10 186 239 8.0E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4196 3263e3a904c0a4a097061aa723d4813e 248 Gene3D G3DSA:3.30.450.40 20 185 1.6E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_2353 43f7fc59172debc639bc740d41e4a072 250 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 105 1.2E-27 T 19-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 Gene3D G3DSA:3.10.20.30 4 103 1.8E-30 T 19-04-2016 IPR012675 Beta-grasp domain AMED_2353 43f7fc59172debc639bc740d41e4a072 250 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 14 219 2.5E-43 T 19-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 SUPERFAMILY SSF46548 124 228 3.31E-18 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 Pfam PF13183 4Fe-4S dicluster domain 140 216 4.0E-14 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_2353 43f7fc59172debc639bc740d41e4a072 250 PANTHER PTHR11921 7 241 2.4E-178 T 19-04-2016 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 Gene3D G3DSA:1.10.1060.10 113 235 1.9E-19 T 19-04-2016 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 53 61 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 PANTHER PTHR11921:SF10 7 241 2.4E-178 T 19-04-2016 AMED_2353 43f7fc59172debc639bc740d41e4a072 250 SUPERFAMILY SSF54292 2 103 5.11E-24 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 SUPERFAMILY SSF47203 231 381 2.44E-13 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 Gene3D G3DSA:1.10.540.10 7 122 7.7E-26 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 Gene3D G3DSA:1.20.140.10 221 385 2.5E-22 T 19-04-2016 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 SUPERFAMILY SSF56645 4 244 5.5E-68 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 Gene3D G3DSA:2.40.110.10 125 220 6.4E-33 T 19-04-2016 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 121 1.1E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 212 2.9E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 377 5.1E-16 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 PANTHER PTHR10909:SF293 2 385 9.7E-196 T 19-04-2016 AMED_2510 cd11a6faed89867c8580a2a43f54a8f6 387 PANTHER PTHR10909 2 385 9.7E-196 T 19-04-2016 AMED_2043 94865d1cc76821cda62c1b7512bb0ead 68 Pfam PF13783 Domain of unknown function (DUF4177) 4 66 5.0E-19 T 19-04-2016 IPR025234 Protein of unknown function DUF4177 AMED_4244 5784694e58ca023b90708003faabb5a1 457 Pfam PF00069 Protein kinase domain 12 264 7.4E-48 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_4244 5784694e58ca023b90708003faabb5a1 457 SMART SM00637 358 454 1.1E-33 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4244 5784694e58ca023b90708003faabb5a1 457 Gene3D G3DSA:3.30.200.20 4 81 6.6E-24 T 19-04-2016 AMED_4244 5784694e58ca023b90708003faabb5a1 457 PANTHER PTHR24362 5 308 3.5E-81 T 19-04-2016 AMED_4244 5784694e58ca023b90708003faabb5a1 457 SUPERFAMILY SSF49384 354 441 4.95E-27 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_4244 5784694e58ca023b90708003faabb5a1 457 Gene3D G3DSA:2.60.40.290 357 448 1.8E-29 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_4244 5784694e58ca023b90708003faabb5a1 457 SUPERFAMILY SSF56112 8 346 1.24E-73 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_4244 5784694e58ca023b90708003faabb5a1 457 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 18 41 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_4244 5784694e58ca023b90708003faabb5a1 457 Gene3D G3DSA:1.10.510.10 82 264 1.8E-48 T 19-04-2016 AMED_4244 5784694e58ca023b90708003faabb5a1 457 PANTHER PTHR24362:SF160 5 308 3.5E-81 T 19-04-2016 AMED_4244 5784694e58ca023b90708003faabb5a1 457 Pfam PF00553 Cellulose binding domain 358 452 4.2E-24 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4244 5784694e58ca023b90708003faabb5a1 457 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 135 147 - T 19-04-2016 IPR008266 Tyrosine-protein kinase, active site GO:0004672|GO:0006468 AMED_6446 14f7776dd8f414fedfb29c257027a893 193 Gene3D G3DSA:1.25.40.10 78 150 2.3E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6446 14f7776dd8f414fedfb29c257027a893 193 SUPERFAMILY SSF48452 26 184 4.87E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6446 14f7776dd8f414fedfb29c257027a893 193 Pfam PF03704 Bacterial transcriptional activator domain 30 172 1.7E-36 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6446 14f7776dd8f414fedfb29c257027a893 193 SMART SM01043 30 172 1.3E-39 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6446 14f7776dd8f414fedfb29c257027a893 193 PANTHER PTHR35807 1 186 4.9E-32 T 19-04-2016 AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 PANTHER PTHR11751 18 389 4.4E-163 T 19-04-2016 AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 SUPERFAMILY SSF53383 14 388 3.06E-94 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 Gene3D G3DSA:3.40.640.10 51 255 1.1E-55 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 Pfam PF00155 Aminotransferase class I and II 37 383 5.9E-54 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 PANTHER PTHR11751:SF401 18 389 4.4E-163 T 19-04-2016 AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 19-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 AMED_9079 23eb7ce29935483026755f5d2b19a2f8 393 Gene3D G3DSA:3.90.1150.10 256 387 3.1E-31 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PIRSF PIRSF000114 1 337 1.1E-100 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 Gene3D G3DSA:3.40.50.720 4 187 9.4E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 164 3.7E-54 T 19-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 SUPERFAMILY SSF51735 5 184 4.32E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 324 1.2E-49 T 19-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 SUPERFAMILY SSF48179 183 336 8.84E-52 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PANTHER PTHR11728 1 338 7.7E-146 T 19-04-2016 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 1.0E-46 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 1.0E-46 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 1.0E-46 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 1.0E-46 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 137 157 1.0E-46 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 1.0E-46 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 Gene3D G3DSA:1.10.1040.10 188 331 6.8E-54 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_1731 a1268202569cac4a56f4c7d56b03dbb8 338 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 327 36.835 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMED_4432 c2afa0cba74c3bf05bc4db610bf6eef2 205 Pfam PF04854 Protein of unknown function, DUF624 25 92 5.7E-6 T 19-04-2016 IPR006938 Protein of unknown function DUF624 AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 Pfam PF13458 Periplasmic binding protein 45 400 2.6E-59 T 19-04-2016 IPR028081 Leucine-binding protein domain AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 Gene3D G3DSA:3.40.50.2300 168 277 6.7E-18 T 19-04-2016 AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 SUPERFAMILY SSF53822 45 401 5.89E-60 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 PANTHER PTHR30483:SF11 39 368 3.8E-65 T 19-04-2016 AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 PANTHER PTHR30483 39 368 3.8E-65 T 19-04-2016 AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 Gene3D G3DSA:3.40.50.2300 319 387 8.8E-33 T 19-04-2016 AMED_1381 0f65b9b700af33cdd768526cb216efc5 437 Gene3D G3DSA:3.40.50.2300 40 167 8.8E-33 T 19-04-2016 AMED_3599 845395ef477210c5e2f766a15325bc63 388 Gene3D G3DSA:3.40.50.720 174 281 2.4E-4 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3599 845395ef477210c5e2f766a15325bc63 388 PANTHER PTHR10160:SF20 9 368 2.4E-15 T 19-04-2016 AMED_3599 845395ef477210c5e2f766a15325bc63 388 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 12 126 3.0E-14 T 19-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMED_3599 845395ef477210c5e2f766a15325bc63 388 SUPERFAMILY SSF51735 144 318 3.33E-15 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3599 845395ef477210c5e2f766a15325bc63 388 Gene3D G3DSA:3.40.50.1770 10 173 2.4E-22 T 19-04-2016 AMED_3599 845395ef477210c5e2f766a15325bc63 388 SUPERFAMILY SSF52283 8 179 2.21E-28 T 19-04-2016 AMED_3599 845395ef477210c5e2f766a15325bc63 388 PANTHER PTHR10160 9 368 2.4E-15 T 19-04-2016 AMED_3599 845395ef477210c5e2f766a15325bc63 388 SMART SM01002 147 312 5.1E-17 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_3599 845395ef477210c5e2f766a15325bc63 388 SMART SM01003 8 144 2.0E-20 T 19-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMED_3599 845395ef477210c5e2f766a15325bc63 388 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 237 365 2.5E-10 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_2210 5677af009f8e976576077415b10f8d50 387 Gene3D G3DSA:3.40.50.2000 170 358 1.1E-34 T 19-04-2016 AMED_2210 5677af009f8e976576077415b10f8d50 387 SUPERFAMILY SSF53756 7 378 4.54E-76 T 19-04-2016 AMED_2210 5677af009f8e976576077415b10f8d50 387 PANTHER PTHR12526:SF353 5 380 1.3E-116 T 19-04-2016 AMED_2210 5677af009f8e976576077415b10f8d50 387 Pfam PF13439 Glycosyltransferase Family 4 17 176 9.5E-12 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_2210 5677af009f8e976576077415b10f8d50 387 Pfam PF00534 Glycosyl transferases group 1 186 360 1.4E-38 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_2210 5677af009f8e976576077415b10f8d50 387 PANTHER PTHR12526 5 380 1.3E-116 T 19-04-2016 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 156 32.816 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 PANTHER PTHR11609:SF5 3 163 7.2E-89 T 19-04-2016 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 Gene3D G3DSA:3.40.50.7700 2 161 1.0E-73 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 SMART SM01001 3 152 4.2E-97 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 Pfam PF00731 AIR carboxylase 4 149 1.1E-65 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 PANTHER PTHR11609 3 163 7.2E-89 T 19-04-2016 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 SUPERFAMILY SSF52255 4 161 5.49E-66 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 PIRSF PIRSF001338 1 163 2.9E-69 T 19-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_0993 45ef338b0420c94f6646f6ef2fa7f128 165 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 4.0E-65 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_4298 e41b718998006db991d151a3521f24bd 331 Gene3D G3DSA:1.20.910.10 119 326 5.2E-54 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_4298 e41b718998006db991d151a3521f24bd 331 SMART SM01236 167 272 4.6E-32 T 19-04-2016 AMED_4298 e41b718998006db991d151a3521f24bd 331 Pfam PF14518 Iron-containing redox enzyme 135 306 7.1E-44 T 19-04-2016 IPR028201 PqqC-like protein AMED_4298 e41b718998006db991d151a3521f24bd 331 SUPERFAMILY SSF48613 131 307 1.31E-10 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 SUPERFAMILY SSF49785 32 157 2.34E-34 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 Gene3D G3DSA:2.60.120.260 165 304 1.2E-28 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 Gene3D G3DSA:2.60.120.260 30 164 3.6E-36 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 SUPERFAMILY SSF49785 166 300 9.22E-27 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 Pfam PF00722 Glycosyl hydrolases family 16 356 565 1.9E-33 T 19-04-2016 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 Pfam PF00754 F5/8 type C domain 40 152 3.3E-28 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 Pfam PF00754 F5/8 type C domain 176 294 1.2E-21 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 Gene3D G3DSA:2.60.120.200 311 568 1.7E-74 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 PANTHER PTHR10963 320 568 2.2E-51 T 19-04-2016 AMED_5252 25e82833b7db0a64a5168ccefa45a075 568 SUPERFAMILY SSF49899 309 568 3.27E-70 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_0032 8c0d6252e0e602587681cb55014c0c4f 115 Gene3D G3DSA:3.40.1000.10 1 115 3.4E-45 T 19-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich AMED_0032 8c0d6252e0e602587681cb55014c0c4f 115 Pfam PF09449 Domain of unknown function (DUF2020) 1 115 9.3E-36 T 19-04-2016 IPR018567 Domain of unknown function DUF2020 AMED_0032 8c0d6252e0e602587681cb55014c0c4f 115 SUPERFAMILY SSF55724 1 115 5.75E-43 T 19-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 SUPERFAMILY SSF51905 309 531 2.2E-13 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PANTHER PTHR23023:SF1 8 221 6.2E-135 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PANTHER PTHR23023 255 506 6.2E-135 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 Gene3D G3DSA:3.50.50.60 185 259 5.5E-5 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 14 216 6.1E-11 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 3.5E-5 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 3.5E-5 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 3.5E-5 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PANTHER PTHR23023:SF1 255 506 6.2E-135 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 SUPERFAMILY SSF51905 8 242 2.16E-49 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 PANTHER PTHR23023 8 221 6.2E-135 T 19-04-2016 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 Gene3D G3DSA:3.50.50.60 424 514 2.4E-67 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7139 72440804bb3dc307b2c394a1d72d2d48 533 Gene3D G3DSA:3.50.50.60 4 184 2.4E-67 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 PIRSF PIRSF001235 5 398 5.6E-107 T 19-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 Gene3D G3DSA:3.30.70.360 221 317 1.0E-24 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 Pfam PF01546 Peptidase family M20/M25/M40 71 394 2.2E-24 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 SUPERFAMILY SSF55031 209 315 4.88E-17 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 Gene3D G3DSA:3.40.630.10 339 397 2.2E-89 T 19-04-2016 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 Gene3D G3DSA:3.40.630.10 7 220 2.2E-89 T 19-04-2016 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 8 393 7.1E-77 T 19-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 PANTHER PTHR32494 7 398 9.3E-111 T 19-04-2016 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 SUPERFAMILY SSF53187 327 397 2.62E-65 T 19-04-2016 AMED_1267 3f5de630e10ebc8619f715bf55c50d3f 398 SUPERFAMILY SSF53187 6 216 2.62E-65 T 19-04-2016 AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 32 133 3.6E-5 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 SMART SM00922 167 261 5.0E-22 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 SUPERFAMILY SSF54826 1 133 2.3E-20 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 PANTHER PTHR13794 1 407 1.9E-162 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 Gene3D G3DSA:3.30.390.10 1 136 4.2E-29 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 PANTHER PTHR13794:SF56 1 407 1.9E-162 T 19-04-2016 AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 Pfam PF13378 Enolase C-terminal domain-like 171 381 2.6E-48 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 Gene3D G3DSA:3.20.20.120 137 375 2.0E-65 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5973 cd8aeeb86d18185c4a1f18b965d7a195 418 SUPERFAMILY SSF51604 133 390 3.54E-68 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 PANTHER PTHR22939:SF106 51 378 2.4E-68 T 19-04-2016 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 PANTHER PTHR22939 51 378 2.4E-68 T 19-04-2016 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 Pfam PF02674 Colicin V production protein 4 145 8.4E-15 T 19-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 Gene3D G3DSA:2.40.10.10 279 377 1.4E-14 T 19-04-2016 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 245 265 1.2E-9 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 324 341 1.2E-9 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 284 308 1.2E-9 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 PRINTS PR00834 HtrA/DegQ protease family signature 225 237 1.2E-9 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 Gene3D G3DSA:2.40.10.10 187 278 4.4E-16 T 19-04-2016 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 Pfam PF13365 Trypsin-like peptidase domain 217 353 1.9E-22 T 19-04-2016 AMED_8827 c9f9c829494994aa6fc8c270c1e45d80 394 SUPERFAMILY SSF50494 191 373 1.54E-34 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00412 Epoxide hydrolase signature 45 60 5.8E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00412 Epoxide hydrolase signature 100 113 5.8E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00412 Epoxide hydrolase signature 254 276 5.8E-7 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 SUPERFAMILY SSF53474 4 277 3.08E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PANTHER PTHR10992 4 158 1.5E-43 T 19-04-2016 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PANTHER PTHR10992 189 277 1.5E-43 T 19-04-2016 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 Gene3D G3DSA:3.40.50.1820 4 277 1.0E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 Pfam PF00561 alpha/beta hydrolase fold 20 266 3.5E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 3.3E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 86 99 3.3E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5288 82510c3ca5800eaa5e1b7bf24ca13ae6 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 3.3E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 PANTHER PTHR24023:SF593 58 384 5.0E-45 T 19-04-2016 AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 PANTHER PTHR24023 58 384 5.0E-45 T 19-04-2016 AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 Pfam PF02515 CoA-transferase family III 8 374 7.3E-137 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 Gene3D G3DSA:3.30.1540.10 225 306 5.7E-33 T 19-04-2016 AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 SUPERFAMILY SSF89796 6 392 8.63E-149 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 Gene3D G3DSA:3.40.50.10540 307 391 6.4E-125 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7853 fab67d10463ce1d83584caa5a93ed8ae 393 Gene3D G3DSA:3.40.50.10540 6 219 6.4E-125 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 39 70 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 Pfam PF16859 Bacterial transcriptional repressor C-terminal 95 181 1.6E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 6.6E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 SUPERFAMILY SSF46689 18 82 1.12E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 PANTHER PTHR30055 9 189 3.2E-21 T 19-04-2016 AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 SUPERFAMILY SSF48498 94 201 1.09E-8 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3336 57bb726bcee4ae13245a1599b96b9d90 213 Gene3D G3DSA:1.10.357.10 10 185 6.8E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 102 2.0E-28 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 Gene3D G3DSA:3.30.160.100 1 101 1.1E-27 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 99 7.0E-20 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 170 224 8.4E-22 T 19-04-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 PANTHER PTHR33231 131 226 2.4E-46 T 19-04-2016 AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 PANTHER PTHR33231 1 109 2.4E-46 T 19-04-2016 AMED_7989 fa5838b04c0ad40b5d6e462b6ae02b82 228 SUPERFAMILY SSF69754 1 106 6.02E-24 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_3764 c987b11cab713cefa25c0246a3e90c7a 137 SUPERFAMILY SSF50685 23 136 1.15E-23 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_3764 c987b11cab713cefa25c0246a3e90c7a 137 PANTHER PTHR34586 32 135 5.8E-29 T 19-04-2016 AMED_3764 c987b11cab713cefa25c0246a3e90c7a 137 Gene3D G3DSA:2.40.40.10 37 135 4.2E-19 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_3764 c987b11cab713cefa25c0246a3e90c7a 137 PANTHER PTHR34586:SF3 32 135 5.8E-29 T 19-04-2016 AMED_3764 c987b11cab713cefa25c0246a3e90c7a 137 Pfam PF03330 Lytic transglycolase 36 132 1.5E-20 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 SUPERFAMILY SSF51905 21 241 2.99E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 SUPERFAMILY SSF51905 331 391 2.99E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 Pfam PF01266 FAD dependent oxidoreductase 22 367 4.6E-58 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 PANTHER PTHR13847 16 387 1.8E-51 T 19-04-2016 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 11 395 1.0E-187 T 19-04-2016 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.50.50.60 12 98 5.6E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.50.50.60 162 240 5.6E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.50.50.60 331 389 5.6E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.30.9.10 241 328 8.3E-16 T 19-04-2016 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 Gene3D G3DSA:3.30.9.10 102 161 8.3E-16 T 19-04-2016 AMED_7553 0a9bdfa8d7604f3ba93089843bb9ba56 403 SUPERFAMILY SSF54373 249 326 6.15E-7 T 19-04-2016 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 Gene3D G3DSA:2.60.40.1180 592 703 6.3E-18 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF51445 152 474 6.53E-127 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF51445 503 579 6.53E-127 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 13 702 4.3E-260 T 19-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 PANTHER PTHR10357 1 583 4.7E-274 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 PANTHER PTHR10357 601 703 4.7E-274 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF81296 13 110 1.26E-35 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 SUPERFAMILY SSF51011 592 703 1.15E-14 T 19-04-2016 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 Gene3D G3DSA:2.60.40.10 13 161 1.1E-46 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 PANTHER PTHR10357:SF74 1 583 4.7E-274 T 19-04-2016 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 PANTHER PTHR10357:SF74 601 703 4.7E-274 T 19-04-2016 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 Pfam PF00128 Alpha amylase, catalytic domain 195 279 1.9E-6 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 SMART SM00642 165 572 7.7E-7 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 17 103 2.5E-18 T 19-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 AMED_2595 e891169f3cfcb2e7bdf9d04753de641e 715 Gene3D G3DSA:3.20.20.80 162 580 4.7E-113 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5137 ce6973d53a82090acbbc49bc3c23e7be 180 PANTHER PTHR38011:SF2 1 157 2.7E-29 T 19-04-2016 AMED_5137 ce6973d53a82090acbbc49bc3c23e7be 180 Gene3D G3DSA:3.40.430.10 2 161 7.1E-20 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_5137 ce6973d53a82090acbbc49bc3c23e7be 180 SUPERFAMILY SSF53597 3 165 5.63E-20 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_5137 ce6973d53a82090acbbc49bc3c23e7be 180 Pfam PF01872 RibD C-terminal domain 3 168 3.6E-17 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_5137 ce6973d53a82090acbbc49bc3c23e7be 180 PANTHER PTHR38011 1 157 2.7E-29 T 19-04-2016 AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 274 4.3E-85 T 19-04-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 PANTHER PTHR39193 1 287 3.2E-84 T 19-04-2016 AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 Gene3D G3DSA:2.60.120.10 19 119 1.1E-28 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 PIRSF PIRSF036628 1 279 2.2E-84 T 19-04-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 SUPERFAMILY SSF51182 18 257 1.35E-56 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 PANTHER PTHR39193:SF1 1 287 3.2E-84 T 19-04-2016 AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 Gene3D G3DSA:2.60.120.10 120 279 3.4E-61 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_1882 b8fc54c313a470889ef6e98c57fb91e5 296 Pfam PF04962 KduI/IolB family 18 273 8.8E-83 T 19-04-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 AMED_3001 d51f737f2aab890e1d08099d32ebb58a 455 Pfam PF05762 VWA domain containing CoxE-like protein 227 447 2.8E-49 T 19-04-2016 IPR008912 Uncharacterised protein family CoxE-like AMED_3001 d51f737f2aab890e1d08099d32ebb58a 455 PANTHER PTHR39338:SF2 4 455 1.1E-113 T 19-04-2016 AMED_3001 d51f737f2aab890e1d08099d32ebb58a 455 PIRSF PIRSF010256 1 455 1.8E-112 T 19-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 AMED_3001 d51f737f2aab890e1d08099d32ebb58a 455 PANTHER PTHR39338 4 455 1.1E-113 T 19-04-2016 AMED_3001 d51f737f2aab890e1d08099d32ebb58a 455 SUPERFAMILY SSF53300 283 414 9.45E-6 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_8443 f497a7aa359ba091d40015e59da86240 236 Gene3D G3DSA:1.10.357.10 11 204 2.7E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8443 f497a7aa359ba091d40015e59da86240 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 65 1.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8443 f497a7aa359ba091d40015e59da86240 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 9.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8443 f497a7aa359ba091d40015e59da86240 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 9.0E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8443 f497a7aa359ba091d40015e59da86240 236 PANTHER PTHR30055:SF65 4 206 6.0E-33 T 19-04-2016 AMED_8443 f497a7aa359ba091d40015e59da86240 236 SUPERFAMILY SSF46689 11 85 1.9E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8443 f497a7aa359ba091d40015e59da86240 236 PANTHER PTHR30055 4 206 6.0E-33 T 19-04-2016 AMED_8443 f497a7aa359ba091d40015e59da86240 236 SUPERFAMILY SSF48498 90 203 1.34E-10 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7747 546ac9f152724479b9152d8d8acc05b0 209 SMART SM01120 32 206 3.8E-73 T 19-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 AMED_7747 546ac9f152724479b9152d8d8acc05b0 209 PANTHER PTHR28629 8 209 4.2E-68 T 19-04-2016 AMED_7747 546ac9f152724479b9152d8d8acc05b0 209 SUPERFAMILY SSF101473 4 207 6.15E-52 T 19-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 AMED_7747 546ac9f152724479b9152d8d8acc05b0 209 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 11 205 4.1E-68 T 19-04-2016 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00563+2.7.-.- AMED_7747 546ac9f152724479b9152d8d8acc05b0 209 Pfam PF02734 DAK2 domain 32 205 1.0E-53 T 19-04-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 91 8.5E-10 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 SMART SM00829 13 310 2.7E-14 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 PANTHER PTHR11695:SF294 18 311 1.0E-61 T 19-04-2016 AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Gene3D G3DSA:3.40.50.720 154 237 2.9E-12 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Gene3D G3DSA:3.90.180.10 2 153 3.5E-44 T 19-04-2016 IPR011032 GroES-like AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 Pfam PF13602 Zinc-binding dehydrogenase 199 310 3.2E-11 T 19-04-2016 AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 SUPERFAMILY SSF51735 120 241 1.44E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 PANTHER PTHR11695 18 311 1.0E-61 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1425 63d2bd59fa7aa5cd4df6b0bf61a8fc34 313 SUPERFAMILY SSF50129 4 153 5.02E-39 T 19-04-2016 IPR011032 GroES-like AMED_8979 1152f81dfa4487d962a9243397e339bb 158 SUPERFAMILY SSF54909 71 153 1.52E-12 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8979 1152f81dfa4487d962a9243397e339bb 158 Gene3D G3DSA:3.30.70.920 73 145 5.7E-16 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8979 1152f81dfa4487d962a9243397e339bb 158 SMART SM00344 10 115 4.2E-28 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 SUPERFAMILY SSF46785 9 60 6.98E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8979 1152f81dfa4487d962a9243397e339bb 158 PANTHER PTHR30154 3 153 1.4E-36 T 19-04-2016 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 Pfam PF13404 AsnC-type helix-turn-helix domain 10 50 6.3E-17 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 Pfam PF01037 Lrp/AsnC ligand binding domain 75 145 2.8E-10 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_8979 1152f81dfa4487d962a9243397e339bb 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 37 1.5E-11 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 10 26 1.5E-11 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 56 1.5E-11 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 PANTHER PTHR30154:SF2 3 153 1.4E-36 T 19-04-2016 AMED_8979 1152f81dfa4487d962a9243397e339bb 158 Gene3D G3DSA:1.10.10.10 11 56 9.7E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3458 acf7fc91a180987b4cc3160d427f53d3 294 Gene3D G3DSA:3.40.630.30 29 140 2.0E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3458 acf7fc91a180987b4cc3160d427f53d3 294 SUPERFAMILY SSF55729 32 167 2.09E-9 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3458 acf7fc91a180987b4cc3160d427f53d3 294 PANTHER PTHR41700 19 288 1.0E-41 T 19-04-2016 AMED_6031 32c165aed21599e1493aa2e6886eb059 208 SUPERFAMILY SSF48452 137 176 1.1E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6031 32c165aed21599e1493aa2e6886eb059 208 SUPERFAMILY SSF48452 19 95 1.1E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6031 32c165aed21599e1493aa2e6886eb059 208 Gene3D G3DSA:1.25.40.10 20 178 5.0E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 SMART SM00833 227 318 4.4E-12 T 19-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 181 1.3E-43 T 19-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 PANTHER PTHR13748:SF10 4 332 1.1E-91 T 19-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 SUPERFAMILY SSF90002 228 318 6.8E-15 T 19-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 228 318 6.1E-19 T 19-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 Gene3D G3DSA:3.30.1220.10 214 319 1.4E-16 T 19-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 Gene3D G3DSA:3.40.50.300 4 196 2.3E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 SUPERFAMILY SSF52540 4 189 1.14E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4153 6a333c64c4c4c56e411e5470d00cf1a8 341 PANTHER PTHR13748 4 332 1.1E-91 T 19-04-2016 AMED_8764 d0b92a7b1b2ca6c795818dcf30a02e23 151 PIRSF PIRSF006092 6 151 8.2E-16 T 19-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMED_8764 d0b92a7b1b2ca6c795818dcf30a02e23 151 SUPERFAMILY SSF54534 83 147 7.98E-10 T 19-04-2016 AMED_8764 d0b92a7b1b2ca6c795818dcf30a02e23 151 Gene3D G3DSA:3.10.50.30 84 149 1.8E-12 T 19-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMED_8764 d0b92a7b1b2ca6c795818dcf30a02e23 151 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 147 4.4E-12 T 19-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMED_7593 28a4ccc93f36d5b2390a593a615acffa 146 Gene3D G3DSA:3.40.50.2300 7 133 3.6E-33 T 19-04-2016 AMED_7593 28a4ccc93f36d5b2390a593a615acffa 146 PANTHER PTHR26402 8 133 2.9E-31 T 19-04-2016 AMED_7593 28a4ccc93f36d5b2390a593a615acffa 146 SUPERFAMILY SSF52172 7 136 3.42E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7593 28a4ccc93f36d5b2390a593a615acffa 146 SMART SM00448 8 130 2.7E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7593 28a4ccc93f36d5b2390a593a615acffa 146 Pfam PF00072 Response regulator receiver domain 10 130 7.8E-20 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_6106 b95da01e8919453e3d3ea86b8a4d1dfe 110 Gene3D G3DSA:3.30.70.1060 28 97 2.3E-8 T 19-04-2016 AMED_6106 b95da01e8919453e3d3ea86b8a4d1dfe 110 Pfam PF03795 YCII-related domain 25 98 7.8E-5 T 19-04-2016 IPR005545 YCII-related AMED_6106 b95da01e8919453e3d3ea86b8a4d1dfe 110 SUPERFAMILY SSF54909 30 100 5.36E-6 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4861 03b94465fa78529e529311ffc2952b61 222 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4861 03b94465fa78529e529311ffc2952b61 222 PANTHER PTHR24220 5 217 7.0E-61 T 19-04-2016 AMED_4861 03b94465fa78529e529311ffc2952b61 222 Pfam PF00005 ABC transporter 23 169 2.3E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4861 03b94465fa78529e529311ffc2952b61 222 SUPERFAMILY SSF52540 9 219 5.45E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4861 03b94465fa78529e529311ffc2952b61 222 Gene3D G3DSA:3.40.50.300 9 217 1.3E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4861 03b94465fa78529e529311ffc2952b61 222 SMART SM00382 32 216 2.3E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1476 4964eda7d30cd9294df89ae463d21b77 375 Pfam PF05816 Toxic anion resistance protein (TelA) 53 368 1.5E-74 T 19-04-2016 IPR008863 Toxic anion resistance AMED_1476 4964eda7d30cd9294df89ae463d21b77 375 PANTHER PTHR38432:SF1 25 375 3.4E-56 T 19-04-2016 AMED_1476 4964eda7d30cd9294df89ae463d21b77 375 PANTHER PTHR38432 25 375 3.4E-56 T 19-04-2016 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 SUPERFAMILY SSF46689 3 73 8.48E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 Gene3D G3DSA:1.10.357.10 3 182 1.5E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 3.6E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 PANTHER PTHR30055:SF37 1 179 1.7E-24 T 19-04-2016 AMED_9222 5bbe41ba7048e981af900c44287e86e1 183 PANTHER PTHR30055 1 179 1.7E-24 T 19-04-2016 AMED_0722 75bf295e16506391b20993de4e87a032 108 Gene3D G3DSA:1.10.287.1060 6 100 6.0E-30 T 19-04-2016 AMED_0722 75bf295e16506391b20993de4e87a032 108 Pfam PF06013 Proteins of 100 residues with WXG 8 91 1.7E-14 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0722 75bf295e16506391b20993de4e87a032 108 SUPERFAMILY SSF140453 7 98 2.62E-16 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0722 75bf295e16506391b20993de4e87a032 108 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 8 94 1.1E-15 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_2924 c09a991d51dd7bf4890530de52f41aba 396 PANTHER PTHR10992 1 223 3.8E-28 T 19-04-2016 AMED_2924 c09a991d51dd7bf4890530de52f41aba 396 SUPERFAMILY SSF53474 10 218 4.34E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2924 c09a991d51dd7bf4890530de52f41aba 396 Gene3D G3DSA:3.40.50.1820 13 219 9.9E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2924 c09a991d51dd7bf4890530de52f41aba 396 Pfam PF12697 Alpha/beta hydrolase family 24 248 1.4E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PANTHER PTHR10587:SF81 36 121 2.1E-38 T 19-04-2016 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 SUPERFAMILY SSF49899 34 220 8.34E-78 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 ProSitePatterns PS00777 Glycosyl hydrolases family 11 (GH11) active site signature 2. 205 216 - T 19-04-2016 IPR033119 Glycoside hydrolase family 11, active site 2 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 141 147 6.7E-18 T 19-04-2016 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 105 114 6.7E-18 T 19-04-2016 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 189 197 6.7E-18 T 19-04-2016 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 161 166 6.7E-18 T 19-04-2016 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 115 125 6.7E-18 T 19-04-2016 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PRINTS PR00911 Glycosyl hydrolase family 11 signature 166 175 6.7E-18 T 19-04-2016 IPR001137 Glycoside hydrolase family 11 GO:0004553|GO:0005975 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 PANTHER PTHR10587 36 121 2.1E-38 T 19-04-2016 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 ProSitePatterns PS00776 Glycosyl hydrolases family 11 (GH11) active site signature 1. 115 125 - T 19-04-2016 IPR018208 Glycoside hydrolase family 11, active site 1 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 Pfam PF00457 Glycosyl hydrolases family 11 43 218 1.6E-76 T 19-04-2016 IPR033123 Glycosyl hydrolases family 11 (GH11) domain MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_1391 28dc64a82a656ba821173ed0b26b6e7f 221 Gene3D G3DSA:2.60.120.180 32 220 1.5E-82 T 19-04-2016 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6784|UniPathway: UPA00114 AMED_3128 f5d5258b17869f961385b40721ca87ab 181 PANTHER PTHR38011 2 150 2.2E-12 T 19-04-2016 AMED_3128 f5d5258b17869f961385b40721ca87ab 181 Pfam PF01872 RibD C-terminal domain 3 153 8.0E-15 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_3128 f5d5258b17869f961385b40721ca87ab 181 SUPERFAMILY SSF53597 4 153 3.93E-22 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_3128 f5d5258b17869f961385b40721ca87ab 181 Gene3D G3DSA:3.40.430.10 3 153 2.6E-23 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 PANTHER PTHR30136 2 264 6.5E-56 T 19-04-2016 AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 SUPERFAMILY SSF55781 68 255 2.03E-45 T 19-04-2016 IPR029016 GAF domain-like AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 SUPERFAMILY SSF46785 15 78 7.26E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 Pfam PF01614 Bacterial transcriptional regulator 134 249 8.0E-27 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 Gene3D G3DSA:3.30.450.40 85 255 1.8E-51 T 19-04-2016 IPR029016 GAF domain-like AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 SMART SM00346 12 100 2.3E-9 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 Pfam PF09339 IclR helix-turn-helix domain 20 63 3.2E-10 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_5556 caa2b28af4ed9ceabc2133362e06bdfa 264 Gene3D G3DSA:1.10.10.10 3 71 3.5E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6993 b492c859fb6c0193ee3c9183474dc4f8 167 PANTHER PTHR11124 1 138 6.1E-33 T 19-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 AMED_6993 b492c859fb6c0193ee3c9183474dc4f8 167 SUPERFAMILY SSF56300 1 163 1.43E-33 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6993 b492c859fb6c0193ee3c9183474dc4f8 167 Gene3D G3DSA:3.60.21.10 1 155 1.0E-30 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6993 b492c859fb6c0193ee3c9183474dc4f8 167 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 156 1.7E-27 T 19-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 AMED_6993 b492c859fb6c0193ee3c9183474dc4f8 167 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 147 3.9E-27 T 19-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type AMED_0222 9c8112c1353899df26c7cdc9198c7df8 293 PANTHER PTHR30011:SF14 20 234 5.4E-45 T 19-04-2016 AMED_0222 9c8112c1353899df26c7cdc9198c7df8 293 SUPERFAMILY SSF51679 20 292 8.51E-51 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0222 9c8112c1353899df26c7cdc9198c7df8 293 Pfam PF00296 Luciferase-like monooxygenase 21 219 9.0E-45 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0222 9c8112c1353899df26c7cdc9198c7df8 293 Gene3D G3DSA:3.20.20.30 1 292 7.4E-57 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0222 9c8112c1353899df26c7cdc9198c7df8 293 PANTHER PTHR30011 20 234 5.4E-45 T 19-04-2016 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 Pfam PF01175 Urocanase 5 539 1.9E-255 T 19-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 PANTHER PTHR12216:SF3 3 548 0.0 T 19-04-2016 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 SUPERFAMILY SSF111326 2 547 1.44E-249 T 19-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 PIRSF PIRSF001423 1 550 7.7E-280 T 19-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 Gene3D G3DSA:3.40.1770.10 3 134 8.2E-153 T 19-04-2016 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 Gene3D G3DSA:3.40.1770.10 352 546 8.2E-153 T 19-04-2016 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 Hamap MF_00577 Urocanate hydratase [hutU]. 1 548 50.303 T 19-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 PANTHER PTHR12216 3 548 0.0 T 19-04-2016 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 ProSitePatterns PS01233 Urocanase signature. 434 449 - T 19-04-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 TIGRFAM TIGR01228 hutU: urocanate hydratase 4 546 2.2E-279 T 19-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 AMED_1266 700d64da8a5005b3d7d90d1b57d86ff8 550 Gene3D G3DSA:3.40.50.10730 135 341 1.6E-85 T 19-04-2016 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 149 234 1.3E-10 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 PANTHER PTHR22604:SF123 6 380 6.3E-93 T 19-04-2016 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 PANTHER PTHR22604 6 380 6.3E-93 T 19-04-2016 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 SUPERFAMILY SSF51735 5 169 7.13E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 SUPERFAMILY SSF55347 143 306 7.52E-37 T 19-04-2016 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 Gene3D G3DSA:3.40.50.720 6 157 4.3E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 128 7.9E-25 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 Gene3D G3DSA:3.30.360.10 329 372 2.0E-47 T 19-04-2016 AMED_3978 8eab0d85168f9e4726015861f0d86ee2 381 Gene3D G3DSA:3.30.360.10 158 283 2.0E-47 T 19-04-2016 AMED_7498 a83dbfd58e0567486c897c415ad0f6ff 226 Pfam PF10099 Anti-sigma-K factor rskA 58 221 5.4E-27 T 19-04-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 AMED_7498 a83dbfd58e0567486c897c415ad0f6ff 226 PANTHER PTHR37461:SF1 1 225 3.2E-26 T 19-04-2016 AMED_7498 a83dbfd58e0567486c897c415ad0f6ff 226 PANTHER PTHR37461 1 225 3.2E-26 T 19-04-2016 AMED_7498 a83dbfd58e0567486c897c415ad0f6ff 226 Pfam PF13490 Putative zinc-finger 10 36 9.5E-6 T 19-04-2016 IPR027383 Putative zinc-finger AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 Gene3D G3DSA:3.40.50.2300 5 122 4.1E-34 T 19-04-2016 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 SMART SM00448 5 118 8.2E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 2.2E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 PANTHER PTHR26402 5 212 2.7E-72 T 19-04-2016 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 SUPERFAMILY SSF52172 4 135 3.98E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 SUPERFAMILY SSF46894 141 212 1.94E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 Pfam PF00072 Response regulator receiver domain 7 118 9.4E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 PANTHER PTHR26402:SF151 5 212 2.7E-72 T 19-04-2016 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 Gene3D G3DSA:1.10.10.10 123 213 3.2E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 SMART SM00421 150 207 3.0E-24 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4826 778ffbd58dbb7a8a905293e4d65536b4 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 207 1.8E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 PANTHER PTHR31650:SF8 1 463 7.2E-119 T 19-04-2016 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 5 466 3.4E-135 T 19-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 SUPERFAMILY SSF52777 28 147 7.34E-6 T 19-04-2016 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 Pfam PF06974 Protein of unknown function (DUF1298) 318 464 2.3E-23 T 19-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 5 270 1.8E-73 T 19-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 SUPERFAMILY SSF52777 243 446 6.56E-5 T 19-04-2016 AMED_7983 32320aef2231a76a3ad470ff72f72413 468 PANTHER PTHR31650 1 463 7.2E-119 T 19-04-2016 AMED_1194 279b00994cc8553dc454cefeb97ecf6e 258 SUPERFAMILY SSF53807 17 253 5.1E-30 T 19-04-2016 AMED_1194 279b00994cc8553dc454cefeb97ecf6e 258 PANTHER PTHR30535:SF6 6 254 6.7E-74 T 19-04-2016 AMED_1194 279b00994cc8553dc454cefeb97ecf6e 258 Gene3D G3DSA:3.40.50.1980 148 252 2.1E-10 T 19-04-2016 AMED_1194 279b00994cc8553dc454cefeb97ecf6e 258 PANTHER PTHR30535 6 254 6.7E-74 T 19-04-2016 AMED_1194 279b00994cc8553dc454cefeb97ecf6e 258 Gene3D G3DSA:3.40.50.1980 18 118 5.9E-17 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 SUPERFAMILY SSF53850 28 310 1.26E-45 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 Gene3D G3DSA:3.40.190.10 30 110 7.7E-29 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 Gene3D G3DSA:3.40.190.10 242 310 7.7E-29 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 5 310 5.6E-54 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMED_4945 7255b97479625ecc268088aed5bf7816 314 Gene3D G3DSA:3.40.190.10 116 241 4.6E-24 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 PANTHER PTHR30024:SF5 4 310 1.1E-34 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 PANTHER PTHR30024 4 310 1.1E-34 T 19-04-2016 AMED_4945 7255b97479625ecc268088aed5bf7816 314 Pfam PF16868 NMT1-like family 34 310 4.8E-44 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMED_5407 b527d2991f492c8a90718569f03f0ed1 253 Gene3D G3DSA:3.40.50.720 20 224 2.7E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5407 b527d2991f492c8a90718569f03f0ed1 253 PANTHER PTHR10366 52 205 2.2E-15 T 19-04-2016 AMED_5407 b527d2991f492c8a90718569f03f0ed1 253 Pfam PF01370 NAD dependent epimerase/dehydratase family 20 177 8.3E-14 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_5407 b527d2991f492c8a90718569f03f0ed1 253 SUPERFAMILY SSF51735 21 223 9.51E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 Gene3D G3DSA:1.10.260.40 1 55 2.7E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 PANTHER PTHR30146 1 332 1.8E-99 T 19-04-2016 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 SUPERFAMILY SSF47413 1 56 4.78E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 Gene3D G3DSA:3.40.50.2300 166 331 1.1E-52 T 19-04-2016 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 Pfam PF13377 Periplasmic binding protein-like domain 165 329 4.9E-39 T 19-04-2016 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 SUPERFAMILY SSF53822 59 331 9.42E-67 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 Gene3D G3DSA:3.40.50.2300 56 165 2.0E-30 T 19-04-2016 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 SMART SM00354 1 68 1.3E-12 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 5.6E-14 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_5777 b614ee2710015e1f0e98a9c0d93c3294 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 1 19 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 SMART SM00448 1 109 1.5E-23 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 Gene3D G3DSA:3.40.50.2300 1 121 1.2E-28 T 19-04-2016 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 SMART SM00862 142 214 1.2E-19 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 Pfam PF00072 Response regulator receiver domain 1 109 5.5E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 PANTHER PTHR26402 1 217 1.6E-73 T 19-04-2016 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 PANTHER PTHR26402:SF511 1 217 1.6E-73 T 19-04-2016 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 214 6.4E-18 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8286 222f87121ca006a506e86fbeab57aa51 222 SUPERFAMILY SSF52172 1 166 3.17E-32 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8286 222f87121ca006a506e86fbeab57aa51 222 Gene3D G3DSA:1.10.10.10 122 215 2.3E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3242 61982be98713d7367afc5c7ce7c5d7a6 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 263 1.3E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3242 61982be98713d7367afc5c7ce7c5d7a6 276 Gene3D G3DSA:1.10.3720.10 4 261 6.1E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3242 61982be98713d7367afc5c7ce7c5d7a6 276 PANTHER PTHR32243 4 274 1.7E-87 T 19-04-2016 AMED_3242 61982be98713d7367afc5c7ce7c5d7a6 276 SUPERFAMILY SSF161098 4 270 5.7E-62 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3242 61982be98713d7367afc5c7ce7c5d7a6 276 PANTHER PTHR32243:SF31 4 274 1.7E-87 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 Gene3D G3DSA:3.50.50.60 111 194 6.6E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 Gene3D G3DSA:3.50.50.60 281 361 6.6E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 Gene3D G3DSA:3.50.50.60 4 70 6.6E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 Pfam PF01494 FAD binding domain 5 357 1.2E-87 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PANTHER PTHR13789 2 351 8.5E-64 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PANTHER PTHR13789:SF219 2 351 8.5E-64 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 360 3.9E-38 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 3.9E-38 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 3.9E-38 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 344 3.9E-38 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.9E-38 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 324 3.9E-38 T 19-04-2016 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 SUPERFAMILY SSF51905 280 361 2.59E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3754 47e470fe6857312338554b5d216d2c1b 517 SUPERFAMILY SSF51905 5 189 2.59E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8884 56d62ffc3cc8e3c302357c0f75bc0f17 191 Gene3D G3DSA:3.40.109.10 6 189 1.0E-38 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_8884 56d62ffc3cc8e3c302357c0f75bc0f17 191 PANTHER PTHR23026 3 190 1.3E-21 T 19-04-2016 AMED_8884 56d62ffc3cc8e3c302357c0f75bc0f17 191 SUPERFAMILY SSF55469 4 189 4.19E-37 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_8884 56d62ffc3cc8e3c302357c0f75bc0f17 191 Pfam PF00881 Nitroreductase family 71 151 6.8E-6 T 19-04-2016 IPR029479 Nitroreductase AMED_8884 56d62ffc3cc8e3c302357c0f75bc0f17 191 Pfam PF00881 Nitroreductase family 11 53 1.6E-9 T 19-04-2016 IPR029479 Nitroreductase AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 Gene3D G3DSA:3.20.20.80 61 264 5.2E-66 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 Pfam PF01183 Glycosyl hydrolases family 25 64 247 1.4E-43 T 19-04-2016 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 PANTHER PTHR34135:SF2 31 255 2.0E-57 T 19-04-2016 AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 SMART SM00641 60 169 4.6E-36 T 19-04-2016 IPR018077 Glycoside hydrolase, family 25 subgroup AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 PANTHER PTHR34135 31 255 2.0E-57 T 19-04-2016 AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 SUPERFAMILY SSF51445 60 263 2.88E-60 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_5105 673ba2030a1bd0c867565efd9e4d36a6 265 ProSitePatterns PS00953 Glycosyl hydrolases family 25 active sites signature. 64 97 - T 19-04-2016 IPR008270 Glycoside hydrolase, family 25, active site GO:0003796|GO:0009253|GO:0016998 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Pfam PF00694 Aconitase C-terminal domain 730 860 1.0E-43 T 19-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 367 381 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 470 481 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 169 177 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 145 158 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 198 211 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 532 545 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 212 227 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 288 301 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PRINTS PR00415 Aconitase family signature 274 287 2.5E-41 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.30.499.10 30 244 2.6E-77 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.40.1060.10 245 362 1.5E-35 T 19-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.30.499.10 458 614 3.8E-64 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.30.499.10 363 388 3.8E-64 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670:SF1 14 388 0.0 T 19-04-2016 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670:SF1 792 937 0.0 T 19-04-2016 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 SUPERFAMILY SSF52016 670 934 2.75E-81 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670:SF1 706 751 0.0 T 19-04-2016 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670:SF1 455 690 0.0 T 19-04-2016 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Pfam PF00330 Aconitase family (aconitate hydratase) 71 601 2.3E-176 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670 706 751 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670 455 690 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 SUPERFAMILY SSF53732 440 666 7.98E-222 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 SUPERFAMILY SSF53732 8 401 7.98E-222 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 ProSitePatterns PS01244 Aconitase family signature 2. 532 545 - T 19-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670 792 937 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 PANTHER PTHR11670 14 388 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 Gene3D G3DSA:3.20.19.10 676 934 9.3E-77 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_4955 2037b79e3f0a0cefcee27897de137b03 937 ProSitePatterns PS00450 Aconitase family signature 1. 466 482 - T 19-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PIRSF PIRSF001112 1 400 7.0E-132 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PANTHER PTHR21661 1 400 3.3E-112 T 19-04-2016 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 SUPERFAMILY SSF53474 5 397 9.78E-92 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 Pfam PF06441 Epoxide hydrolase N terminus 12 117 3.2E-34 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PANTHER PTHR21661:SF35 1 400 3.3E-112 T 19-04-2016 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 Gene3D G3DSA:3.40.50.1820 5 399 1.2E-125 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 137 152 1.7E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 373 395 1.7E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 341 357 1.7E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5636 5cdc108695491ead3b48f4a39e80be0c 400 PRINTS PR00412 Epoxide hydrolase signature 108 126 1.7E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_4902 1969edcc4c8f43760fc6886918954583 293 SUPERFAMILY SSF51679 13 293 3.97E-32 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4902 1969edcc4c8f43760fc6886918954583 293 Gene3D G3DSA:3.20.20.30 17 293 2.6E-22 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4902 1969edcc4c8f43760fc6886918954583 293 TIGRFAM TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family 9 290 3.2E-87 T 19-04-2016 IPR019922 Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted AMED_4902 1969edcc4c8f43760fc6886918954583 293 Pfam PF00296 Luciferase-like monooxygenase 27 265 1.7E-12 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 6.5E-26 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 Gene3D G3DSA:1.10.10.10 126 224 5.5E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 Pfam PF00072 Response regulator receiver domain 7 116 1.3E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 PANTHER PTHR26402 5 227 1.5E-107 T 19-04-2016 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 Gene3D G3DSA:3.40.50.2300 3 125 2.0E-41 T 19-04-2016 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 PANTHER PTHR26402:SF50 5 227 1.5E-107 T 19-04-2016 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 SMART SM00862 148 224 1.1E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 SUPERFAMILY SSF52172 5 181 9.53E-45 T 19-04-2016 IPR011006 CheY-like superfamily AMED_7993 71c42958dbfe2eb39890b9a5bef28a18 227 SMART SM00448 5 115 2.6E-46 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_7059 1acd6f427eb32417b1eccd47475dc211 219 PANTHER PTHR23026 4 210 1.0E-36 T 19-04-2016 AMED_7059 1acd6f427eb32417b1eccd47475dc211 219 Pfam PF00881 Nitroreductase family 9 175 3.1E-31 T 19-04-2016 IPR029479 Nitroreductase AMED_7059 1acd6f427eb32417b1eccd47475dc211 219 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 3 200 7.3E-68 T 19-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 AMED_7059 1acd6f427eb32417b1eccd47475dc211 219 SUPERFAMILY SSF55469 2 206 2.75E-49 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_7059 1acd6f427eb32417b1eccd47475dc211 219 Gene3D G3DSA:3.40.109.10 3 206 1.5E-48 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 PANTHER PTHR11808:SF12 3 241 3.3E-232 T 19-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 PANTHER PTHR11808:SF12 271 432 3.3E-232 T 19-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 427 1.3E-198 T 19-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 Gene3D G3DSA:3.40.640.10 8 292 3.2E-120 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 Gene3D G3DSA:3.90.1150.10 294 430 7.6E-48 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 427 7.4E-141 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 PANTHER PTHR11808 3 241 3.3E-232 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 PANTHER PTHR11808 271 432 3.3E-232 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 SUPERFAMILY SSF53383 7 427 1.5E-120 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7929 1e1a6de502e0d7a4e66fe82d9c6d9723 434 PIRSF PIRSF001434 1 431 2.5E-129 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMED_2265 2f1f3bf6f6262d7fa6f44b8380891524 196 Pfam PF07978 NIPSNAP 26 122 1.3E-17 T 19-04-2016 IPR012577 NIPSNAP AMED_2265 2f1f3bf6f6262d7fa6f44b8380891524 196 SUPERFAMILY SSF54909 20 121 5.01E-20 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2265 2f1f3bf6f6262d7fa6f44b8380891524 196 Gene3D G3DSA:3.30.70.900 17 121 2.5E-10 T 19-04-2016 AMED_3054 0cad0ac6c5ce346a8fce99c489b67ef0 141 SMART SM00347 16 116 1.0E-20 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3054 0cad0ac6c5ce346a8fce99c489b67ef0 141 PANTHER PTHR33164 23 140 8.8E-25 T 19-04-2016 AMED_3054 0cad0ac6c5ce346a8fce99c489b67ef0 141 SUPERFAMILY SSF46785 15 131 2.59E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3054 0cad0ac6c5ce346a8fce99c489b67ef0 141 Gene3D G3DSA:1.10.10.10 13 129 5.1E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3054 0cad0ac6c5ce346a8fce99c489b67ef0 141 PANTHER PTHR33164:SF10 23 140 8.8E-25 T 19-04-2016 AMED_3054 0cad0ac6c5ce346a8fce99c489b67ef0 141 Pfam PF01047 MarR family 23 80 9.1E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7491 dd7e046221eb9bc7fa9dc032b80e1658 199 SUPERFAMILY SSF46689 5 62 2.64E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7491 dd7e046221eb9bc7fa9dc032b80e1658 199 Gene3D G3DSA:1.10.357.10 21 192 5.4E-8 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5678 54b3e5aaa89eab2f8384223eab2aba0d 208 Pfam PF13546 DDE superfamily endonuclease 36 166 3.1E-18 T 19-04-2016 AMED_6024 48fee023942cd6882274988cf23a9cbc 330 Gene3D G3DSA:3.40.50.720 150 244 5.3E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6024 48fee023942cd6882274988cf23a9cbc 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 84 1.4E-4 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6024 48fee023942cd6882274988cf23a9cbc 330 SMART SM00829 10 320 6.6E-11 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6024 48fee023942cd6882274988cf23a9cbc 330 SUPERFAMILY SSF50129 1 147 1.49E-31 T 19-04-2016 IPR011032 GroES-like AMED_6024 48fee023942cd6882274988cf23a9cbc 330 Pfam PF13602 Zinc-binding dehydrogenase 187 320 5.2E-15 T 19-04-2016 AMED_6024 48fee023942cd6882274988cf23a9cbc 330 PANTHER PTHR11695 15 320 1.4E-61 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6024 48fee023942cd6882274988cf23a9cbc 330 SUPERFAMILY SSF51735 115 255 1.72E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6024 48fee023942cd6882274988cf23a9cbc 330 Gene3D G3DSA:3.90.180.10 1 149 3.4E-31 T 19-04-2016 IPR011032 GroES-like AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 PANTHER PTHR30061:SF14 1 419 4.3E-97 T 19-04-2016 AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 SUPERFAMILY SSF53850 36 417 9.78E-64 T 19-04-2016 AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 PANTHER PTHR30061 1 419 4.3E-97 T 19-04-2016 AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Gene3D G3DSA:3.40.190.10 146 311 1.6E-34 T 19-04-2016 AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Gene3D G3DSA:3.40.190.10 37 145 2.4E-31 T 19-04-2016 AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Gene3D G3DSA:3.40.190.10 312 350 2.4E-31 T 19-04-2016 AMED_5369 ac5d8e7ba3fc2cb9339fdd46fc44d5b7 435 Pfam PF01547 Bacterial extracellular solute-binding protein 46 326 3.6E-40 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_1352 f6b2eec2c8eeffd8f2babfadc8ae9c78 48 Gene3D G3DSA:1.10.10.10 2 35 8.3E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1352 f6b2eec2c8eeffd8f2babfadc8ae9c78 48 Pfam PF00196 Bacterial regulatory proteins, luxR family 2 30 2.1E-7 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1352 f6b2eec2c8eeffd8f2babfadc8ae9c78 48 SUPERFAMILY SSF46894 2 35 2.82E-9 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 Pfam PF00561 alpha/beta hydrolase fold 48 279 9.1E-24 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 SUPERFAMILY SSF53474 22 291 3.22E-57 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 Gene3D G3DSA:3.40.50.1820 23 291 4.6E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PANTHER PTHR10992 22 293 2.0E-41 T 19-04-2016 AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 237 251 3.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 129 142 3.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 71 86 3.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5705 a155840d3f1c8c4b4bd12a5e8285e9d7 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 3.0E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1467 c41cf7ab73818279d412fa1cbb5a2009 372 Gene3D G3DSA:1.10.443.10 182 340 4.5E-17 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_1467 c41cf7ab73818279d412fa1cbb5a2009 372 Pfam PF00589 Phage integrase family 195 339 1.1E-5 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_1467 c41cf7ab73818279d412fa1cbb5a2009 372 SUPERFAMILY SSF56349 60 341 4.12E-34 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_1467 c41cf7ab73818279d412fa1cbb5a2009 372 Gene3D G3DSA:1.10.150.130 60 153 1.4E-9 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 PANTHER PTHR23117 1 175 7.1E-74 T 19-04-2016 AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 PANTHER PTHR23117:SF13 1 175 7.1E-74 T 19-04-2016 AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 SMART SM00072 1 166 8.7E-48 T 19-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 Pfam PF00625 Guanylate kinase 14 163 6.3E-38 T 19-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 Gene3D G3DSA:3.40.50.300 67 167 5.4E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 2 163 6.3E-58 T 19-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 ProSitePatterns PS00856 Guanylate kinase-like signature. 19 36 - T 19-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 Gene3D G3DSA:3.30.63.10 14 66 8.5E-29 T 19-04-2016 AMED_2755 9cd227f540097fd39ad81c6e251189f0 175 SUPERFAMILY SSF52540 2 166 2.3E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 PANTHER PTHR11496:SF62 231 300 9.5E-141 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 PANTHER PTHR11496 231 300 9.5E-141 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 184 212 - T 19-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 Pfam PF00465 Iron-containing alcohol dehydrogenase 17 415 2.1E-103 T 19-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 Gene3D G3DSA:1.20.1090.10 196 422 7.6E-56 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 Gene3D G3DSA:3.40.50.1970 16 195 9.8E-48 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 PANTHER PTHR11496:SF62 316 426 9.5E-141 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 PANTHER PTHR11496:SF62 5 215 9.5E-141 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 PANTHER PTHR11496 5 215 9.5E-141 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 PANTHER PTHR11496 316 426 9.5E-141 T 19-04-2016 AMED_0338 246226b3a2d4424ae9601ea41883dfbb 426 SUPERFAMILY SSF56796 14 422 1.57E-97 T 19-04-2016 AMED_5160 af7d9f227ddb8d3dc1b1c784ef39f624 129 Pfam PF13466 STAS domain 37 114 5.4E-13 T 19-04-2016 IPR002645 STAS domain AMED_5160 af7d9f227ddb8d3dc1b1c784ef39f624 129 SUPERFAMILY SSF52091 33 116 1.08E-11 T 19-04-2016 IPR002645 STAS domain AMED_5160 af7d9f227ddb8d3dc1b1c784ef39f624 129 Gene3D G3DSA:3.30.750.24 32 116 3.8E-13 T 19-04-2016 IPR002645 STAS domain AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 PANTHER PTHR11550 1 507 5.5E-291 T 19-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 TIGRFAM TIGR00337 PyrG: CTP synthase 2 502 2.0E-213 T 19-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Gene3D G3DSA:3.40.50.880 256 506 5.8E-91 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Gene3D G3DSA:3.40.50.300 1 253 7.1E-111 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 SUPERFAMILY SSF52317 259 506 2.37E-75 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Pfam PF00117 Glutamine amidotransferase class-I 270 502 1.5E-50 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 SUPERFAMILY SSF52540 1 235 2.02E-101 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6014 daf38ff1e0b27f3437bcfe2d63adf8b1 524 Pfam PF06418 CTP synthase N-terminus 1 235 2.6E-104 T 19-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Gene3D G3DSA:3.20.20.80 163 420 2.1E-13 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 SMART SM00060 546 616 9.9E-11 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 SUPERFAMILY SSF51445 53 139 3.85E-22 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 SUPERFAMILY SSF51445 181 420 3.85E-22 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 SUPERFAMILY SSF49265 541 632 1.23E-15 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Pfam PF12891 Glycoside hydrolase family 44 88 323 3.0E-80 T 19-04-2016 IPR024745 Glycoside hydrolase, family 44 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Pfam PF00041 Fibronectin type III domain 547 620 2.3E-6 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Gene3D G3DSA:2.60.40.290 635 727 1.7E-21 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 SMART SM00637 636 730 9.3E-12 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Gene3D G3DSA:2.60.40.1180 443 538 1.1E-7 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 SUPERFAMILY SSF49384 633 728 3.07E-20 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Gene3D G3DSA:2.60.40.10 548 626 4.5E-20 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7825 5e3cc2cc2dc274fb9559cab8f3ad12a5 733 Pfam PF00553 Cellulose binding domain 636 729 7.9E-16 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5142 8601a1d0f1f83fa08e7c633671817a89 388 Pfam PF06271 RDD family 211 358 2.9E-11 T 19-04-2016 IPR010432 RDD AMED_5142 8601a1d0f1f83fa08e7c633671817a89 388 Pfam PF04892 VanZ like family 49 187 5.3E-19 T 19-04-2016 IPR006976 VanZ-like AMED_5142 8601a1d0f1f83fa08e7c633671817a89 388 PANTHER PTHR36834:SF1 2 235 1.9E-37 T 19-04-2016 AMED_5142 8601a1d0f1f83fa08e7c633671817a89 388 PANTHER PTHR36834 2 235 1.9E-37 T 19-04-2016 AMED_4364 f608783543f7c5f21d9437103bd13688 276 PANTHER PTHR32243 1 276 5.6E-117 T 19-04-2016 AMED_4364 f608783543f7c5f21d9437103bd13688 276 Gene3D G3DSA:1.10.3720.10 4 263 2.4E-67 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4364 f608783543f7c5f21d9437103bd13688 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 261 2.1E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4364 f608783543f7c5f21d9437103bd13688 276 PANTHER PTHR32243:SF42 1 276 5.6E-117 T 19-04-2016 AMED_4364 f608783543f7c5f21d9437103bd13688 276 SUPERFAMILY SSF161098 2 276 1.87E-74 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9094 36505aef7e3fde0a5b28170c98fc0471 413 SUPERFAMILY SSF103473 4 395 1.7E-70 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9094 36505aef7e3fde0a5b28170c98fc0471 413 Pfam PF07690 Major Facilitator Superfamily 14 320 7.4E-31 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9094 36505aef7e3fde0a5b28170c98fc0471 413 PANTHER PTHR23508:SF15 8 413 1.2E-83 T 19-04-2016 AMED_9094 36505aef7e3fde0a5b28170c98fc0471 413 Gene3D G3DSA:1.20.1250.20 6 189 5.8E-29 T 19-04-2016 AMED_9094 36505aef7e3fde0a5b28170c98fc0471 413 Gene3D G3DSA:1.20.1250.20 215 401 4.7E-20 T 19-04-2016 AMED_9094 36505aef7e3fde0a5b28170c98fc0471 413 PANTHER PTHR23508 8 413 1.2E-83 T 19-04-2016 AMED_6790 08f759752f956540e329d5bb4fdbea88 323 SUPERFAMILY SSF56059 130 323 2.7E-18 T 19-04-2016 AMED_6790 08f759752f956540e329d5bb4fdbea88 323 PANTHER PTHR21621 117 318 6.5E-16 T 19-04-2016 AMED_6790 08f759752f956540e329d5bb4fdbea88 323 TIGRFAM TIGR04187 GRASP_SAV_5884: ATP-grasp ribosomal peptide maturase, SAV_5884 family 9 318 2.5E-115 T 19-04-2016 IPR026449 ATP-grasp ribosomal peptide maturase, SAV_5884 family AMED_6790 08f759752f956540e329d5bb4fdbea88 323 Pfam PF08443 RimK-like ATP-grasp domain 138 317 1.7E-4 T 19-04-2016 IPR013651 ATP-grasp fold, RimK-type AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 SUPERFAMILY SSF53822 60 322 8.95E-59 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 47 9.8E-18 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 SUPERFAMILY SSF47413 1 58 5.2E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 2 12 1.7E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 1.7E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 SMART SM00354 1 70 5.8E-27 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 Gene3D G3DSA:3.40.50.2300 53 168 2.7E-36 T 19-04-2016 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 Gene3D G3DSA:1.10.260.40 1 52 1.3E-23 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 PANTHER PTHR30146 1 322 2.1E-98 T 19-04-2016 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 Gene3D G3DSA:3.40.50.2300 169 301 3.5E-42 T 19-04-2016 AMED_4598 45bcebc1300544f3ea1d3d9951f962c0 323 Pfam PF13377 Periplasmic binding protein-like domain 164 322 3.6E-31 T 19-04-2016 AMED_6451 aac7c43f28b2361947e77169e4d68e95 247 PANTHER PTHR30011 8 172 1.7E-26 T 19-04-2016 AMED_6451 aac7c43f28b2361947e77169e4d68e95 247 PANTHER PTHR30011:SF5 8 172 1.7E-26 T 19-04-2016 AMED_6451 aac7c43f28b2361947e77169e4d68e95 247 SUPERFAMILY SSF51679 10 237 2.5E-36 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6451 aac7c43f28b2361947e77169e4d68e95 247 Gene3D G3DSA:3.20.20.30 7 236 3.1E-37 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6451 aac7c43f28b2361947e77169e4d68e95 247 Pfam PF00296 Luciferase-like monooxygenase 6 176 8.0E-27 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6335 c6714cba43ea7f8f1b7a03c235187f85 273 Gene3D G3DSA:3.40.50.1820 45 272 2.7E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6335 c6714cba43ea7f8f1b7a03c235187f85 273 Pfam PF00756 Putative esterase 54 265 2.2E-9 T 19-04-2016 IPR000801 Putative esterase AMED_6335 c6714cba43ea7f8f1b7a03c235187f85 273 SUPERFAMILY SSF53474 37 272 4.99E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 PANTHER PTHR13789:SF251 1 369 2.8E-104 T 19-04-2016 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 SUPERFAMILY SSF51905 265 347 1.1E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 SUPERFAMILY SSF51905 1 164 1.1E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 PANTHER PTHR13789 1 369 2.8E-104 T 19-04-2016 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 Pfam PF01494 FAD binding domain 1 337 7.2E-19 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 Gene3D G3DSA:3.50.50.60 266 340 8.5E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 Gene3D G3DSA:3.50.50.60 2 169 8.5E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 9.8E-8 T 19-04-2016 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 9.8E-8 T 19-04-2016 AMED_4862 98a722d87ea15c94bf8ba12d83897df5 394 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 9.8E-8 T 19-04-2016 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 302 31.54 T 19-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 SUPERFAMILY SSF53328 1 206 1.44E-54 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 Gene3D G3DSA:3.10.25.10 208 307 1.5E-28 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 SUPERFAMILY SSF50486 206 307 1.81E-24 T 19-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 Gene3D G3DSA:3.40.50.170 1 205 3.8E-57 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 Pfam PF02911 Formyl transferase, C-terminal domain 204 299 8.1E-21 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 Pfam PF00551 Formyl transferase 2 179 1.5E-30 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 300 1.0E-66 T 19-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMED_2764 24e4c76d4f2e864651fa260dc658b493 308 PANTHER PTHR11138 1 307 2.7E-92 T 19-04-2016 AMED_3241 bf7b32634d8507d49a601d37d859563a 283 Pfam PF08241 Methyltransferase domain 93 189 4.1E-13 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_3241 bf7b32634d8507d49a601d37d859563a 283 SUPERFAMILY SSF53335 13 255 1.12E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3241 bf7b32634d8507d49a601d37d859563a 283 Gene3D G3DSA:3.40.50.150 9 251 2.0E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3241 bf7b32634d8507d49a601d37d859563a 283 PANTHER PTHR10108 76 252 1.0E-22 T 19-04-2016 AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 Gene3D G3DSA:3.40.50.970 1 172 3.9E-52 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 SUPERFAMILY SSF52467 150 321 5.64E-36 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 SUPERFAMILY SSF52518 1 174 2.55E-44 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 514 1.4E-26 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 SUPERFAMILY SSF52518 349 517 1.73E-40 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 Gene3D G3DSA:3.40.50.970 361 517 1.5E-40 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 Gene3D G3DSA:3.40.50.1220 179 360 3.3E-39 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 184 315 1.1E-29 T 19-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 165 1.9E-50 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_7860 c8cd416c5907652f0a5dbe4d3e0a861f 531 PANTHER PTHR18968 1 515 5.2E-114 T 19-04-2016 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 42 388 1.3E-35 T 19-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 332 347 1.1E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 69 88 1.1E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 43 62 1.1E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 90 108 1.1E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 109 128 1.1E-5 T 19-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 Gene3D G3DSA:3.40.640.10 80 346 4.5E-78 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 PANTHER PTHR11999 12 447 1.0E-65 T 19-04-2016 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 SUPERFAMILY SSF53383 3 447 8.55E-104 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 Gene3D G3DSA:3.90.1150.10 347 448 6.0E-16 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_7521 fda3a6b88f7ce5322b2b7549d4dc6826 461 Gene3D G3DSA:1.20.1340.10 6 76 2.7E-5 T 19-04-2016 AMED_3173 ecbc289854e32ce5d8955649852d07a1 152 Gene3D G3DSA:3.40.30.10 2 137 1.5E-24 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_3173 ecbc289854e32ce5d8955649852d07a1 152 Pfam PF00578 AhpC/TSA family 5 125 1.2E-18 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_3173 ecbc289854e32ce5d8955649852d07a1 152 PANTHER PTHR10681 1 139 4.5E-18 T 19-04-2016 AMED_3173 ecbc289854e32ce5d8955649852d07a1 152 SUPERFAMILY SSF52833 2 148 4.71E-25 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2628 7314bef37da5564f67d86e91c4bb5c78 511 Gene3D G3DSA:3.20.20.140 42 147 3.9E-11 T 19-04-2016 AMED_2628 7314bef37da5564f67d86e91c4bb5c78 511 SMART SM00481 45 120 2.1E-6 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_2628 7314bef37da5564f67d86e91c4bb5c78 511 SUPERFAMILY SSF89550 271 291 2.55E-19 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_2628 7314bef37da5564f67d86e91c4bb5c78 511 SUPERFAMILY SSF89550 41 129 2.55E-19 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_2628 7314bef37da5564f67d86e91c4bb5c78 511 SUPERFAMILY SSF89550 164 221 2.55E-19 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_2628 7314bef37da5564f67d86e91c4bb5c78 511 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 29 4.7E-5 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 SUPERFAMILY SSF53850 90 295 5.07E-36 T 19-04-2016 AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 Gene3D G3DSA:3.40.190.10 93 177 2.1E-13 T 19-04-2016 AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 PANTHER PTHR30346 2 295 1.3E-52 T 19-04-2016 AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 Gene3D G3DSA:1.10.10.10 4 84 1.4E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 Pfam PF03466 LysR substrate binding domain 89 294 1.5E-38 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 66 5.6E-16 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 SUPERFAMILY SSF46785 4 113 7.0E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7240 da9e9b90033375390ffd60f17fb2750b 303 Gene3D G3DSA:3.40.190.10 178 264 1.6E-25 T 19-04-2016 AMED_3652 ef60ff20fe1a741c5786d27092a917d0 190 PANTHER PTHR30055 2 186 1.1E-15 T 19-04-2016 AMED_3652 ef60ff20fe1a741c5786d27092a917d0 190 Gene3D G3DSA:1.10.357.10 2 184 2.6E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3652 ef60ff20fe1a741c5786d27092a917d0 190 PANTHER PTHR30055:SF47 2 186 1.1E-15 T 19-04-2016 AMED_3652 ef60ff20fe1a741c5786d27092a917d0 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 4.8E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3652 ef60ff20fe1a741c5786d27092a917d0 190 SUPERFAMILY SSF46689 4 71 1.9E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3652 ef60ff20fe1a741c5786d27092a917d0 190 SUPERFAMILY SSF48498 75 183 6.43E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3435 2b0367a4d963ef5d1702e9e2f220020a 293 Pfam PF00296 Luciferase-like monooxygenase 3 221 6.0E-39 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3435 2b0367a4d963ef5d1702e9e2f220020a 293 TIGRFAM TIGR03854 F420_MSMEG_3544: probable F420-dependent oxidoreductase, MSMEG_3544 family 5 293 1.4E-124 T 19-04-2016 IPR022402 F420-dependent oxidoreductase-predicted, MSMEG3544 AMED_3435 2b0367a4d963ef5d1702e9e2f220020a 293 Gene3D G3DSA:3.20.20.30 11 290 1.8E-57 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3435 2b0367a4d963ef5d1702e9e2f220020a 293 PANTHER PTHR30011 16 220 1.3E-32 T 19-04-2016 AMED_3435 2b0367a4d963ef5d1702e9e2f220020a 293 SUPERFAMILY SSF51679 4 291 5.15E-49 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 93 703 8.2E-185 T 19-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PANTHER PTHR11573 37 266 0.0 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PANTHER PTHR11573 289 937 0.0 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Gene3D G3DSA:3.20.70.20 539 585 2.5E-99 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Gene3D G3DSA:3.20.70.20 652 697 2.5E-99 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Gene3D G3DSA:3.20.70.20 68 480 2.5E-99 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Pfam PF02867 Ribonucleotide reductase, barrel domain 158 693 1.2E-141 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 360 371 1.0E-12 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 394 417 1.0E-12 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 566 1.0E-12 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 233 252 1.0E-12 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PRINTS PR01183 Ribonucleotide reductase large chain signature 432 454 1.0E-12 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 SUPERFAMILY SSF51998 158 589 1.34E-131 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 SUPERFAMILY SSF51998 623 697 1.34E-131 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 54 137 3.3E-19 T 19-04-2016 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PANTHER PTHR11573:SF18 37 266 0.0 T 19-04-2016 AMED_2394 3ebfc66d2db5cb2d80bd7e547a9e8591 937 PANTHER PTHR11573:SF18 289 937 0.0 T 19-04-2016 AMED_4026 fc82981418d11c9b1c417867d4e793c4 416 Pfam PF13796 Putative sensor 18 195 4.9E-19 T 19-04-2016 IPR025828 Putative sensor domain AMED_4026 fc82981418d11c9b1c417867d4e793c4 416 PANTHER PTHR24421 202 412 8.3E-59 T 19-04-2016 AMED_4026 fc82981418d11c9b1c417867d4e793c4 416 PANTHER PTHR24421:SF19 202 412 8.3E-59 T 19-04-2016 AMED_4026 fc82981418d11c9b1c417867d4e793c4 416 Pfam PF07730 Histidine kinase 224 291 4.2E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_4026 fc82981418d11c9b1c417867d4e793c4 416 SUPERFAMILY SSF55874 301 411 1.44E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4026 fc82981418d11c9b1c417867d4e793c4 416 Gene3D G3DSA:3.30.565.10 322 412 1.3E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1165 fa2bdb58c4aeb00aade6a0f9271c2e1f 296 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 292 52.114 T 19-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 AMED_1165 fa2bdb58c4aeb00aade6a0f9271c2e1f 296 Pfam PF03186 CobD/Cbib protein 10 270 6.2E-42 T 19-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 AMED_1165 fa2bdb58c4aeb00aade6a0f9271c2e1f 296 PANTHER PTHR34308 39 296 1.3E-44 T 19-04-2016 AMED_1165 fa2bdb58c4aeb00aade6a0f9271c2e1f 296 PANTHER PTHR34308:SF1 39 296 1.3E-44 T 19-04-2016 AMED_2767 8cf1d7aebc3dee122fc3fb55469f2518 367 Gene3D G3DSA:3.40.710.10 44 350 4.3E-81 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2767 8cf1d7aebc3dee122fc3fb55469f2518 367 PANTHER PTHR22935 42 344 4.1E-60 T 19-04-2016 AMED_2767 8cf1d7aebc3dee122fc3fb55469f2518 367 Pfam PF00144 Beta-lactamase 43 352 2.8E-60 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_2767 8cf1d7aebc3dee122fc3fb55469f2518 367 SUPERFAMILY SSF56601 30 351 8.45E-77 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5611 c28fc3306a3b7e1760d659f106890b80 127 PANTHER PTHR30173 1 80 8.5E-32 T 19-04-2016 AMED_5611 c28fc3306a3b7e1760d659f106890b80 127 SUPERFAMILY SSF48452 7 97 3.35E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5611 c28fc3306a3b7e1760d659f106890b80 127 PANTHER PTHR30173:SF7 1 80 8.5E-32 T 19-04-2016 AMED_5611 c28fc3306a3b7e1760d659f106890b80 127 Gene3D G3DSA:1.25.40.10 3 97 4.2E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 237 249 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 Gene3D G3DSA:1.10.600.10 32 362 3.3E-77 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 Pfam PF00348 Polyprenyl synthetase 46 292 2.4E-45 T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 PANTHER PTHR12001:SF45 41 112 3.8E-92 T 19-04-2016 AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 PANTHER PTHR12001:SF45 129 363 3.8E-92 T 19-04-2016 AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 PANTHER PTHR12001 41 112 3.8E-92 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 PANTHER PTHR12001 129 363 3.8E-92 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 SUPERFAMILY SSF48576 17 362 1.75E-69 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_2324 08b7645f2f74db31cc640317d82ed5dd 363 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 93 107 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 Pfam PF00795 Carbon-nitrogen hydrolase 293 487 7.7E-21 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 79 468 6.8E-74 T 19-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 SUPERFAMILY SSF56317 269 502 5.23E-41 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 Gene3D G3DSA:3.60.110.10 262 500 2.7E-31 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 26 506 16.601 T 19-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 PANTHER PTHR23088 222 514 2.9E-50 T 19-04-2016 AMED_4733 e01f5a649f912d64ccdff26040ebd4a3 536 PANTHER PTHR23088:SF29 222 514 2.9E-50 T 19-04-2016 AMED_8960 e76a23e20a2fef0b81bab75cb1607517 71 SUPERFAMILY SSF69047 6 55 2.88E-5 T 19-04-2016 IPR008462 CsbD-like AMED_8960 e76a23e20a2fef0b81bab75cb1607517 71 Gene3D G3DSA:1.10.1470.10 3 58 1.8E-9 T 19-04-2016 IPR008462 CsbD-like AMED_8960 e76a23e20a2fef0b81bab75cb1607517 71 Pfam PF05532 CsbD-like 3 51 9.7E-11 T 19-04-2016 IPR008462 CsbD-like AMED_9077 a2c8df6b19f0aba8972dcfcb6fa1d633 272 Gene3D G3DSA:3.40.50.150 2 270 1.9E-85 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9077 a2c8df6b19f0aba8972dcfcb6fa1d633 272 SUPERFAMILY SSF53335 12 256 5.32E-27 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9077 a2c8df6b19f0aba8972dcfcb6fa1d633 272 PIRSF PIRSF017393 1 271 6.4E-76 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_9077 a2c8df6b19f0aba8972dcfcb6fa1d633 272 Pfam PF04672 S-adenosyl methyltransferase 6 270 1.3E-69 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_6999 04bcece50f85fe315dccfc08fa083603 424 Pfam PF00990 Diguanylate cyclase, GGDEF domain 241 405 6.0E-35 T 19-04-2016 IPR000160 GGDEF domain AMED_6999 04bcece50f85fe315dccfc08fa083603 424 SUPERFAMILY SSF55073 249 408 1.33E-37 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_6999 04bcece50f85fe315dccfc08fa083603 424 Gene3D G3DSA:3.30.70.270 243 411 2.3E-42 T 19-04-2016 AMED_6999 04bcece50f85fe315dccfc08fa083603 424 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 238 409 3.9E-42 T 19-04-2016 IPR000160 GGDEF domain AMED_6999 04bcece50f85fe315dccfc08fa083603 424 SMART SM00267 230 409 3.5E-37 T 19-04-2016 IPR000160 GGDEF domain AMED_6999 04bcece50f85fe315dccfc08fa083603 424 PANTHER PTHR10799 153 415 1.0E-29 T 19-04-2016 AMED_6999 04bcece50f85fe315dccfc08fa083603 424 PANTHER PTHR10799:SF774 153 415 1.0E-29 T 19-04-2016 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 PANTHER PTHR11019:SF39 21 289 2.9E-30 T 19-04-2016 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 PANTHER PTHR11019 21 289 2.9E-30 T 19-04-2016 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 SMART SM00342 205 288 5.1E-27 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 SUPERFAMILY SSF46689 241 290 1.75E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 Gene3D G3DSA:1.10.10.60 243 290 8.5E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 Pfam PF12833 Helix-turn-helix domain 211 289 2.9E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 Gene3D G3DSA:1.10.10.60 185 242 3.5E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5989 3eb9603ee8d938c9e7278cb5a8e801ca 291 SUPERFAMILY SSF46689 188 239 2.43E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 Gene3D G3DSA:1.10.357.10 10 202 4.0E-43 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 SUPERFAMILY SSF46689 10 89 2.79E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 PANTHER PTHR30328:SF28 8 201 5.1E-74 T 19-04-2016 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 PANTHER PTHR30328 8 201 5.1E-74 T 19-04-2016 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 7.3E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 SUPERFAMILY SSF48498 90 200 8.45E-24 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.9E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1116 e52e6967625f94c66f04c0d81ad4955a 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.9E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0796 e4157bdf60a041cd89a38a797eb111ff 98 Pfam PF01817 Chorismate mutase type II 26 79 1.3E-8 T 19-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_0796 e4157bdf60a041cd89a38a797eb111ff 98 Gene3D G3DSA:1.20.59.10 14 79 3.4E-13 T 19-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_0796 e4157bdf60a041cd89a38a797eb111ff 98 SMART SM00830 26 88 6.2E-5 T 19-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_0796 e4157bdf60a041cd89a38a797eb111ff 98 SUPERFAMILY SSF48600 19 80 3.21E-12 T 19-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 AMED_0796 e4157bdf60a041cd89a38a797eb111ff 98 TIGRFAM TIGR01808 CM_M_hiGC-arch: chorismate mutase 22 94 4.2E-30 T 19-04-2016 IPR010958 Chorismate mutase, high GC Gram-positive bacteria/archaeal AMED_5078 3e95b4005159719b47ba669096141624 223 SMART SM00862 148 218 8.9E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5078 3e95b4005159719b47ba669096141624 223 SUPERFAMILY SSF46894 129 219 7.94E-27 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5078 3e95b4005159719b47ba669096141624 223 SMART SM00448 1 112 3.5E-39 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5078 3e95b4005159719b47ba669096141624 223 PANTHER PTHR26402:SF556 1 219 1.0E-85 T 19-04-2016 AMED_5078 3e95b4005159719b47ba669096141624 223 SUPERFAMILY SSF52172 1 118 5.41E-39 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5078 3e95b4005159719b47ba669096141624 223 PANTHER PTHR26402 1 219 1.0E-85 T 19-04-2016 AMED_5078 3e95b4005159719b47ba669096141624 223 Gene3D G3DSA:1.10.10.10 129 220 5.1E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5078 3e95b4005159719b47ba669096141624 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 218 7.8E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_5078 3e95b4005159719b47ba669096141624 223 Pfam PF00072 Response regulator receiver domain 4 112 8.3E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5078 3e95b4005159719b47ba669096141624 223 Gene3D G3DSA:3.40.50.2300 1 119 1.5E-37 T 19-04-2016 AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 PANTHER PTHR31683:SF12 144 360 8.9E-95 T 19-04-2016 AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 PANTHER PTHR31683:SF12 38 90 8.9E-95 T 19-04-2016 AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 SMART SM00656 115 351 7.0E-47 T 19-04-2016 IPR002022 Pectate lyase/Amb allergen AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 Gene3D G3DSA:2.160.20.10 31 427 4.9E-107 T 19-04-2016 IPR012334 Pectin lyase fold AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 SUPERFAMILY SSF51126 31 427 1.38E-69 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 PANTHER PTHR31683 144 360 8.9E-95 T 19-04-2016 AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 PANTHER PTHR31683 38 90 8.9E-95 T 19-04-2016 AMED_4436 d474cb3f8cf68c1e1f42f6553522d020 428 Pfam PF00544 Pectate lyase 137 345 5.2E-48 T 19-04-2016 IPR002022 Pectate lyase/Amb allergen AMED_3281 715bc5d925c95dd20be71853ae7045da 174 Pfam PF01569 PAP2 superfamily 59 164 1.7E-17 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3281 715bc5d925c95dd20be71853ae7045da 174 SUPERFAMILY SSF48317 19 168 3.53E-28 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3281 715bc5d925c95dd20be71853ae7045da 174 PANTHER PTHR14969 33 168 1.6E-20 T 19-04-2016 AMED_3281 715bc5d925c95dd20be71853ae7045da 174 SMART SM00014 53 163 4.4E-14 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3281 715bc5d925c95dd20be71853ae7045da 174 Gene3D G3DSA:1.20.144.10 29 168 1.5E-24 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_6658 615bacbd6f91699a25980027e0195cd8 231 Gene3D G3DSA:3.40.50.620 9 203 1.8E-52 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6658 615bacbd6f91699a25980027e0195cd8 231 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 41 206 6.4E-41 T 19-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 AMED_6658 615bacbd6f91699a25980027e0195cd8 231 SUPERFAMILY SSF52402 14 195 2.57E-41 T 19-04-2016 AMED_6658 615bacbd6f91699a25980027e0195cd8 231 PANTHER PTHR23293:SF5 10 230 5.1E-81 T 19-04-2016 AMED_6658 615bacbd6f91699a25980027e0195cd8 231 PANTHER PTHR23293 10 230 5.1E-81 T 19-04-2016 AMED_6658 615bacbd6f91699a25980027e0195cd8 231 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 229 8.2E-71 T 19-04-2016 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 AMED_6658 615bacbd6f91699a25980027e0195cd8 231 PIRSF PIRSF000857 2 231 8.3E-89 T 19-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 AMED_6658 615bacbd6f91699a25980027e0195cd8 231 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 23 230 8.5E-61 T 19-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:1.10.10.60 85 140 2.9E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 PANTHER PTHR10815 161 288 7.8E-24 T 19-04-2016 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 Pfam PF02805 Metal binding domain of Ada 12 76 1.0E-28 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 PANTHER PTHR10815:SF9 161 288 7.8E-24 T 19-04-2016 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 SUPERFAMILY SSF53155 192 266 2.24E-12 T 19-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:1.10.10.60 152 183 2.4E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 SUPERFAMILY SSF57884 7 92 1.96E-29 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:3.40.10.10 7 84 7.8E-31 T 19-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 SMART SM00342 103 185 1.1E-21 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 Pfam PF12833 Helix-turn-helix domain 109 185 3.1E-19 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 Gene3D G3DSA:3.30.160.70 184 266 3.8E-22 T 19-04-2016 AMED_7338 bf05edca0a20fc592409c1a281bb642a 296 SUPERFAMILY SSF46689 101 137 1.92E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8293 016c95493697930ef00c5abbcdc8fec8 399 Gene3D G3DSA:3.90.1150.10 259 390 6.7E-31 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8293 016c95493697930ef00c5abbcdc8fec8 399 Gene3D G3DSA:3.40.640.10 51 258 1.4E-49 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8293 016c95493697930ef00c5abbcdc8fec8 399 Pfam PF00155 Aminotransferase class I and II 76 378 2.0E-27 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_8293 016c95493697930ef00c5abbcdc8fec8 399 PANTHER PTHR11751:SF21 14 396 2.0E-79 T 19-04-2016 AMED_8293 016c95493697930ef00c5abbcdc8fec8 399 PANTHER PTHR11751 14 396 2.0E-79 T 19-04-2016 AMED_8293 016c95493697930ef00c5abbcdc8fec8 399 SUPERFAMILY SSF53383 27 389 3.2E-80 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_5412 eb8f758b8b2c30087669ddc6b1bf6272 375 Gene3D G3DSA:3.40.50.2000 215 355 1.9E-20 T 19-04-2016 AMED_5412 eb8f758b8b2c30087669ddc6b1bf6272 375 Gene3D G3DSA:3.40.50.2000 1 214 3.5E-30 T 19-04-2016 AMED_5412 eb8f758b8b2c30087669ddc6b1bf6272 375 Pfam PF06722 Protein of unknown function (DUF1205) 169 249 2.2E-8 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5412 eb8f758b8b2c30087669ddc6b1bf6272 375 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 279 352 3.8E-7 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_5412 eb8f758b8b2c30087669ddc6b1bf6272 375 SUPERFAMILY SSF53756 1 365 1.19E-66 T 19-04-2016 AMED_6975 e10764876c4f43aa5c1154f7ad7030b5 305 PANTHER PTHR10426 15 304 1.7E-69 T 19-04-2016 IPR004141 Strictosidine synthase GO:0009058|GO:0016844 AMED_6975 e10764876c4f43aa5c1154f7ad7030b5 305 Pfam PF03088 Strictosidine synthase 105 185 7.2E-15 T 19-04-2016 IPR018119 Strictosidine synthase, conserved region GO:0009058|GO:0016844 AMED_6975 e10764876c4f43aa5c1154f7ad7030b5 305 SUPERFAMILY SSF63829 4 218 2.18E-42 T 19-04-2016 AMED_6975 e10764876c4f43aa5c1154f7ad7030b5 305 Gene3D G3DSA:2.120.10.30 2 219 1.1E-48 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_6975 e10764876c4f43aa5c1154f7ad7030b5 305 Gene3D G3DSA:2.120.10.30 253 271 1.1E-48 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_7290 6bbda8097ccfe2614808072de8f431d7 363 Pfam PF14386 Domain of unknown function (DUF4417) 158 287 4.9E-11 T 19-04-2016 IPR025530 Protein of unknown function DUF4417 AMED_6154 93e0c95ed50c5cc77f8243f23c02d80b 296 Gene3D G3DSA:3.40.50.620 3 151 2.4E-5 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_6154 93e0c95ed50c5cc77f8243f23c02d80b 296 SUPERFAMILY SSF52402 4 182 1.99E-6 T 19-04-2016 AMED_9168 0f4fd6938a52669b5df3f63a42035861 177 PANTHER PTHR30289:SF0 7 176 3.9E-81 T 19-04-2016 AMED_9168 0f4fd6938a52669b5df3f63a42035861 177 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 41 173 1.2E-39 T 19-04-2016 IPR005247 YbhB/YbcL AMED_9168 0f4fd6938a52669b5df3f63a42035861 177 PANTHER PTHR30289 7 176 3.9E-81 T 19-04-2016 AMED_9168 0f4fd6938a52669b5df3f63a42035861 177 SUPERFAMILY SSF49777 17 175 1.31E-48 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_9168 0f4fd6938a52669b5df3f63a42035861 177 Gene3D G3DSA:3.90.280.10 16 175 2.3E-52 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_9168 0f4fd6938a52669b5df3f63a42035861 177 Pfam PF01161 Phosphatidylethanolamine-binding protein 42 173 8.6E-36 T 19-04-2016 IPR008914 Phosphatidylethanolamine-binding protein AMED_8663 063acb3a3c2eca9c7199c554873a909d 775 Gene3D G3DSA:2.60.40.320 145 189 4.8E-4 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_8663 063acb3a3c2eca9c7199c554873a909d 775 PANTHER PTHR10066 368 775 2.6E-114 T 19-04-2016 AMED_8663 063acb3a3c2eca9c7199c554873a909d 775 PANTHER PTHR10066:SF12 368 775 2.6E-114 T 19-04-2016 AMED_8663 063acb3a3c2eca9c7199c554873a909d 775 SUPERFAMILY SSF51126 471 673 6.91E-7 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_8663 063acb3a3c2eca9c7199c554873a909d 775 Pfam PF13290 Chitobiase/beta-hexosaminidase C-terminal domain 138 203 5.3E-20 T 19-04-2016 AMED_3547 b43ed94b53af27c76b46ffbf8f07072b 191 Gene3D G3DSA:1.10.3300.10 18 188 2.6E-29 T 19-04-2016 IPR023286 ABATE domain AMED_3547 b43ed94b53af27c76b46ffbf8f07072b 191 PANTHER PTHR35525 1 191 6.7E-14 T 19-04-2016 AMED_3547 b43ed94b53af27c76b46ffbf8f07072b 191 Pfam PF11706 CGNR zinc finger 143 186 2.7E-14 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_3547 b43ed94b53af27c76b46ffbf8f07072b 191 Pfam PF07336 Putative stress-induced transcription regulator 20 126 3.8E-5 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_3547 b43ed94b53af27c76b46ffbf8f07072b 191 SUPERFAMILY SSF160904 16 185 8.11E-28 T 19-04-2016 AMED_1053 74e803f89c52cbeb40681a059f2e765d 328 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 1 315 1.8E-57 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_1053 74e803f89c52cbeb40681a059f2e765d 328 PANTHER PTHR30365 1 210 1.8E-32 T 19-04-2016 AMED_1053 74e803f89c52cbeb40681a059f2e765d 328 PANTHER PTHR30365:SF6 1 210 1.8E-32 T 19-04-2016 AMED_2761 936d64f5d6e5231d9cf070ff04ecc1b6 552 PANTHER PTHR40050 13 411 3.5E-32 T 19-04-2016 AMED_2761 936d64f5d6e5231d9cf070ff04ecc1b6 552 Pfam PF08757 CotH protein 97 310 5.9E-22 T 19-04-2016 IPR014867 Spore coat protein CotH AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 PANTHER PTHR18866:SF74 142 267 2.3E-18 T 19-04-2016 AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 Pfam PF02626 Allophanate hydrolase subunit 2 25 275 1.4E-81 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 SUPERFAMILY SSF50891 170 276 4.17E-14 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 PANTHER PTHR18866 142 267 2.3E-18 T 19-04-2016 AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 276 9.3E-81 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 Gene3D G3DSA:2.40.100.10 170 276 1.1E-8 T 19-04-2016 IPR029000 Cyclophilin-like domain AMED_8386 f32fc7797b589ffc44b2879bc2b9d08e 277 SMART SM00797 24 277 9.2E-94 T 19-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B AMED_2734 9c7050a2212381a6148ef84054520c1d 175 SUPERFAMILY SSF52540 4 165 1.07E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2734 9c7050a2212381a6148ef84054520c1d 175 PANTHER PTHR21087 7 167 6.6E-44 T 19-04-2016 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 Hamap MF_00109 Shikimate kinase [aroK]. 3 168 25.607 T 19-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 Gene3D G3DSA:3.40.50.300 5 167 5.5E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2734 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 6 21 6.9E-13 T 19-04-2016 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 76 85 6.9E-13 T 19-04-2016 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 58 66 6.9E-13 T 19-04-2016 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 30 43 6.9E-13 T 19-04-2016 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 PRINTS PR01100 Shikimate kinase family signature 96 113 6.9E-13 T 19-04-2016 AMED_2734 9c7050a2212381a6148ef84054520c1d 175 Pfam PF01202 Shikimate kinase 12 167 9.0E-39 T 19-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 PANTHER PTHR11751:SF10 124 454 5.2E-69 T 19-04-2016 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 SUPERFAMILY SSF53383 101 453 2.21E-65 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 SMART SM00345 22 81 7.4E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 Pfam PF00155 Aminotransferase class I and II 143 397 5.1E-12 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 Gene3D G3DSA:3.40.640.10 142 346 7.1E-46 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 Gene3D G3DSA:1.10.10.10 10 82 2.0E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 PANTHER PTHR11751 124 454 5.2E-69 T 19-04-2016 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 1.2E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1741 9e6b831456e90797bc223a0a36bbc9ee 454 SUPERFAMILY SSF46785 16 85 1.36E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5025 737646141ac1583b89433aa047394ab1 236 Pfam PF00753 Metallo-beta-lactamase superfamily 28 202 1.1E-13 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5025 737646141ac1583b89433aa047394ab1 236 SMART SM00849 27 202 2.3E-31 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5025 737646141ac1583b89433aa047394ab1 236 Gene3D G3DSA:3.60.15.10 21 217 1.1E-53 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5025 737646141ac1583b89433aa047394ab1 236 SUPERFAMILY SSF56281 25 222 1.16E-43 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5025 737646141ac1583b89433aa047394ab1 236 PANTHER PTHR11935:SF114 20 214 1.5E-53 T 19-04-2016 AMED_5025 737646141ac1583b89433aa047394ab1 236 PANTHER PTHR11935 20 214 1.5E-53 T 19-04-2016 AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 SUPERFAMILY SSF53474 181 235 9.45E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 SUPERFAMILY SSF53474 341 463 9.45E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 SUPERFAMILY SSF53474 78 132 9.45E-17 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 Pfam PF00561 alpha/beta hydrolase fold 82 361 4.1E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 PANTHER PTHR10992 10 130 2.9E-32 T 19-04-2016 AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 Pfam PF08386 TAP-like protein 411 497 5.7E-13 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 Gene3D G3DSA:3.40.50.1820 48 131 1.8E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 Gene3D G3DSA:3.40.50.1820 179 303 1.8E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 Gene3D G3DSA:3.40.50.1820 378 494 1.8E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 PANTHER PTHR10992 180 238 2.9E-32 T 19-04-2016 AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 PANTHER PTHR10992:SF863 10 130 2.9E-32 T 19-04-2016 AMED_4101 d6ca335a9d4fec4109f3833d1c20b175 558 PANTHER PTHR10992:SF863 180 238 2.9E-32 T 19-04-2016 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 SUPERFAMILY SSF103473 499 524 6.54E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 SUPERFAMILY SSF103473 265 437 6.54E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 SUPERFAMILY SSF103473 17 212 6.54E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 Gene3D G3DSA:1.20.1250.20 500 530 2.6E-21 T 19-04-2016 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 Gene3D G3DSA:1.20.1250.20 29 211 4.0E-28 T 19-04-2016 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 Gene3D G3DSA:1.20.1250.20 284 438 2.6E-21 T 19-04-2016 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 PRINTS PR01035 Tetracycline resistance protein signature 55 74 4.1E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 PRINTS PR01035 Tetracycline resistance protein signature 149 171 4.1E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 PRINTS PR01035 Tetracycline resistance protein signature 26 42 4.1E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 PANTHER PTHR23501:SF73 5 543 1.1E-166 T 19-04-2016 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 25 522 2.4E-73 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 PANTHER PTHR23501 5 543 1.1E-166 T 19-04-2016 AMED_8758 08e19866418cbfa155edbe85c3ac3d11 551 Pfam PF07690 Major Facilitator Superfamily 29 427 7.2E-49 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6075 2f1b3081251c4af30c7ba17898cc52d9 133 Gene3D G3DSA:1.10.10.10 18 129 1.7E-38 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6075 2f1b3081251c4af30c7ba17898cc52d9 133 SUPERFAMILY SSF46785 21 129 5.93E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6075 2f1b3081251c4af30c7ba17898cc52d9 133 PANTHER PTHR33204:SF6 9 128 1.1E-37 T 19-04-2016 AMED_6075 2f1b3081251c4af30c7ba17898cc52d9 133 Pfam PF01638 HxlR-like helix-turn-helix 32 118 1.4E-24 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6075 2f1b3081251c4af30c7ba17898cc52d9 133 PANTHER PTHR33204 9 128 1.1E-37 T 19-04-2016 AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 Gene3D G3DSA:2.60.40.1120 10 87 1.9E-5 T 19-04-2016 IPR014766 Carboxypeptidase, regulatory domain AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 SUPERFAMILY SSF101874 96 267 9.68E-47 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 Gene3D G3DSA:2.40.128.110 97 267 2.8E-50 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 Pfam PF04264 YceI-like domain 98 264 5.6E-34 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 PANTHER PTHR34406:SF1 42 273 7.4E-50 T 19-04-2016 AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 SUPERFAMILY SSF49478 11 72 4.71E-6 T 19-04-2016 AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 SMART SM00867 97 265 1.7E-52 T 19-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMED_9129 4cc5f69a233db4b6c8fbc8ff13c4a71d 273 PANTHER PTHR34406 42 273 7.4E-50 T 19-04-2016 AMED_8514 a7bf048bbcd960c9909cd72e0644b2d7 129 Gene3D G3DSA:1.10.10.10 3 36 3.8E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8514 a7bf048bbcd960c9909cd72e0644b2d7 129 Pfam PF12728 Helix-turn-helix domain 2 34 1.2E-7 T 19-04-2016 AMED_8514 a7bf048bbcd960c9909cd72e0644b2d7 129 Gene3D G3DSA:2.40.50.100 61 122 2.3E-20 T 19-04-2016 AMED_8514 a7bf048bbcd960c9909cd72e0644b2d7 129 SUPERFAMILY SSF50331 5 122 6.56E-17 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMED_8514 a7bf048bbcd960c9909cd72e0644b2d7 129 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 2 35 2.1E-8 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_8514 a7bf048bbcd960c9909cd72e0644b2d7 129 Pfam PF03459 TOBE domain 61 120 2.0E-9 T 19-04-2016 IPR005116 Transport-associated OB, type 1 AMED_1112 9355ca03be3048e6528169b06290dbf0 105 Pfam PF16170 Domain of unknown function (DUF4873) 6 96 2.2E-35 T 19-04-2016 IPR032371 Domain of unknown function DUF4873 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Gene3D G3DSA:1.10.10.10 7 74 2.6E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 SUPERFAMILY SSF53383 80 428 6.45E-67 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Pfam PF00155 Aminotransferase class I and II 109 316 2.6E-7 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 SMART SM00345 15 72 1.4E-4 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 72 1.9E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 PANTHER PTHR11751 67 428 7.7E-79 T 19-04-2016 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 SUPERFAMILY SSF46785 4 82 1.52E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Gene3D G3DSA:3.90.1150.10 295 428 1.8E-9 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 Gene3D G3DSA:3.40.640.10 128 294 4.1E-40 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8341 ff6d1ebb15d9fb29eab5ee8e6428aeb3 431 PANTHER PTHR11751:SF10 67 428 7.7E-79 T 19-04-2016 AMED_3723 50fa48b765e1d5d15aa90394bc0ca9cc 436 SUPERFAMILY SSF103473 7 384 5.89E-57 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3723 50fa48b765e1d5d15aa90394bc0ca9cc 436 Gene3D G3DSA:1.20.1250.20 206 384 1.6E-12 T 19-04-2016 AMED_3723 50fa48b765e1d5d15aa90394bc0ca9cc 436 Gene3D G3DSA:1.20.1250.20 14 193 7.1E-29 T 19-04-2016 AMED_3723 50fa48b765e1d5d15aa90394bc0ca9cc 436 PANTHER PTHR23501 6 377 5.1E-103 T 19-04-2016 AMED_3723 50fa48b765e1d5d15aa90394bc0ca9cc 436 PANTHER PTHR23501:SF4 6 377 5.1E-103 T 19-04-2016 AMED_3723 50fa48b765e1d5d15aa90394bc0ca9cc 436 Pfam PF07690 Major Facilitator Superfamily 18 335 8.8E-40 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7665 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 SUPERFAMILY SSF53955 98 269 1.57E-36 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_7665 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 Pfam PF13406 Transglycosylase SLT domain 186 243 2.4E-7 T 19-04-2016 IPR031304 Transglycosylase SLT domain 2 AMED_7665 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 Gene3D G3DSA:1.10.530.10 116 152 1.2E-8 T 19-04-2016 AMED_7665 ef5eeb46e3e56e4d8a3d8155a1dc1013 392 Gene3D G3DSA:1.10.530.10 189 263 1.2E-8 T 19-04-2016 AMED_1412 203c30cecc43ce643a2b7e28f8f2484f 530 PANTHER PTHR23513 103 507 2.7E-66 T 19-04-2016 AMED_1412 203c30cecc43ce643a2b7e28f8f2484f 530 Pfam PF05977 Transmembrane secretion effector 123 507 7.2E-33 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_1412 203c30cecc43ce643a2b7e28f8f2484f 530 Gene3D G3DSA:1.20.1250.20 333 507 6.9E-18 T 19-04-2016 AMED_1412 203c30cecc43ce643a2b7e28f8f2484f 530 Gene3D G3DSA:1.20.1250.20 123 303 4.4E-15 T 19-04-2016 AMED_1412 203c30cecc43ce643a2b7e28f8f2484f 530 SUPERFAMILY SSF103473 123 511 2.09E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 Pfam PF00831 Ribosomal L29 protein 10 66 2.4E-24 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 PANTHER PTHR10916 9 68 4.3E-24 T 19-04-2016 AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 7 66 16.458 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 PANTHER PTHR10916:SF0 9 68 4.3E-24 T 19-04-2016 AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 SUPERFAMILY SSF46561 8 69 3.14E-22 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 TIGRFAM TIGR00012 L29: ribosomal protein uL29 11 66 3.3E-19 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0685 be69d0ffc15d8e70c295550ba981cf89 82 Gene3D G3DSA:1.10.287.310 8 70 4.7E-29 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 Gene3D G3DSA:1.10.10.10 130 188 2.1E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 SUPERFAMILY SSF88659 130 187 2.43E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 PANTHER PTHR30173:SF22 1 317 3.1E-97 T 19-04-2016 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 TIGRFAM TIGR02960 SigX5: RNA polymerase sigma-70 factor, TIGR02960 family 9 317 3.6E-110 T 19-04-2016 IPR014305 RNA polymerase sigma-G type, actinobacteria AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 36 67 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 Gene3D G3DSA:3.10.450.50 199 312 2.8E-19 T 19-04-2016 IPR032710 NTF2-like domain AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 187 8.7E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 Pfam PF12680 SnoaL-like domain 208 280 2.0E-7 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 PANTHER PTHR30173 1 317 3.1E-97 T 19-04-2016 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 Gene3D G3DSA:1.10.1740.10 9 99 5.7E-25 T 19-04-2016 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 SUPERFAMILY SSF88946 7 91 2.0E-21 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 SUPERFAMILY SSF54427 203 304 4.2E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 Pfam PF08281 Sigma-70, region 4 135 187 4.8E-15 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3616 e312fc71d63b1dfcfba35e1061c2fc8f 317 Pfam PF04542 Sigma-70 region 2 16 81 1.6E-15 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5956 e141b1e46d59814eeb07659ba7db7a9f 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 114 1.2E-4 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_5956 e141b1e46d59814eeb07659ba7db7a9f 130 Gene3D G3DSA:3.10.180.10 5 118 8.8E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5956 e141b1e46d59814eeb07659ba7db7a9f 130 SUPERFAMILY SSF54593 1 120 1.88E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 Pfam PF14031 Putative serine dehydratase domain 321 416 5.7E-13 T 19-04-2016 IPR026956 D-serine dehydratase-like domain AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 SMART SM01119 321 418 7.5E-32 T 19-04-2016 IPR026956 D-serine dehydratase-like domain AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 PANTHER PTHR28004 22 432 7.2E-113 T 19-04-2016 AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 Pfam PF01168 Alanine racemase, N-terminal domain 58 260 1.5E-12 T 19-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 Gene3D G3DSA:3.20.20.10 60 213 2.3E-7 T 19-04-2016 IPR029066 PLP-binding barrel AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 PANTHER PTHR28004:SF1 22 432 7.2E-113 T 19-04-2016 AMED_6063 ca25065ff435698ffa1f13e1d253b2b6 432 SUPERFAMILY SSF51419 58 272 6.8E-25 T 19-04-2016 IPR029066 PLP-binding barrel AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 PANTHER PTHR30055 1 174 4.3E-23 T 19-04-2016 AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 8.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 8.7E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 Gene3D G3DSA:1.10.357.10 12 174 1.7E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 SUPERFAMILY SSF48498 86 174 4.17E-7 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 9.3E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5725 b95a1285ccbd83345a0ebb24c964fc79 184 SUPERFAMILY SSF46689 3 83 9.23E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3246 9dc0f52aeb3a8b77c6ddb2457f80353a 335 Pfam PF01522 Polysaccharide deacetylase 113 250 5.5E-12 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3246 9dc0f52aeb3a8b77c6ddb2457f80353a 335 Gene3D G3DSA:3.20.20.370 93 251 2.3E-10 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3246 9dc0f52aeb3a8b77c6ddb2457f80353a 335 SUPERFAMILY SSF88713 76 252 5.99E-17 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_8861 0ad76213267aa3d65c431df85cd7fa90 346 SUPERFAMILY SSF55729 169 335 8.49E-9 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8861 0ad76213267aa3d65c431df85cd7fa90 346 Pfam PF13480 Acetyltransferase (GNAT) domain 180 324 7.7E-7 T 19-04-2016 AMED_4084 87af7aaeee2d4e11332e1d41c9540d3a 357 PANTHER PTHR21266 75 219 7.6E-15 T 19-04-2016 AMED_4084 87af7aaeee2d4e11332e1d41c9540d3a 357 Gene3D G3DSA:2.102.10.10 75 145 1.3E-13 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4084 87af7aaeee2d4e11332e1d41c9540d3a 357 SUPERFAMILY SSF50022 73 145 4.06E-16 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_4084 87af7aaeee2d4e11332e1d41c9540d3a 357 Pfam PF00355 Rieske [2Fe-2S] domain 75 142 5.7E-9 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_9019 f02e5a980b01aaad5198c8bd3e4c50d3 282 Gene3D G3DSA:3.20.10.10 131 270 1.6E-32 T 19-04-2016 AMED_9019 f02e5a980b01aaad5198c8bd3e4c50d3 282 PANTHER PTHR11825 4 260 1.2E-61 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_9019 f02e5a980b01aaad5198c8bd3e4c50d3 282 Gene3D G3DSA:3.30.470.10 5 99 5.8E-25 T 19-04-2016 AMED_9019 f02e5a980b01aaad5198c8bd3e4c50d3 282 SUPERFAMILY SSF56752 5 266 5.23E-56 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_9019 f02e5a980b01aaad5198c8bd3e4c50d3 282 Pfam PF01063 Amino-transferase class IV 31 256 3.2E-42 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_9019 f02e5a980b01aaad5198c8bd3e4c50d3 282 PANTHER PTHR11825:SF32 4 260 1.2E-61 T 19-04-2016 AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 SUPERFAMILY SSF53649 663 802 1.16E-5 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 SUPERFAMILY SSF53649 845 888 1.16E-5 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 303 333 2.1E-7 T 19-04-2016 IPR011964 YVTN beta-propeller repeat AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 Pfam PF04185 Phosphoesterase family 695 775 4.0E-7 T 19-04-2016 IPR007312 Phosphoesterase GO:0016788 AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 SUPERFAMILY SSF63825 98 245 8.89E-25 T 19-04-2016 AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 SUPERFAMILY SSF63825 272 370 8.89E-25 T 19-04-2016 AMED_1395 3e8bb37a1c2a2cf0735240a1bdd10934 914 Gene3D G3DSA:2.130.10.10 78 368 1.3E-22 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_7315 c475eb308dada58b1b3b5bd65c25dfeb 95 SUPERFAMILY SSF51717 1 93 1.03E-29 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMED_7315 c475eb308dada58b1b3b5bd65c25dfeb 95 Pfam PF00809 Pterin binding enzyme 1 76 1.4E-20 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_7315 c475eb308dada58b1b3b5bd65c25dfeb 95 PANTHER PTHR20941 1 95 8.7E-34 T 19-04-2016 AMED_7315 c475eb308dada58b1b3b5bd65c25dfeb 95 Gene3D G3DSA:3.20.20.20 1 93 3.8E-32 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMED_6200 9714626c155985d454ebf0d905971e7a 332 SUPERFAMILY SSF63825 69 220 5.49E-7 T 19-04-2016 AMED_6200 9714626c155985d454ebf0d905971e7a 332 Gene3D G3DSA:2.130.10.10 88 218 2.5E-4 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_8735 c95c487f6656e5cf0097a9d89725846d 206 PANTHER PTHR10108:SF711 1 186 2.1E-21 T 19-04-2016 AMED_8735 c95c487f6656e5cf0097a9d89725846d 206 PANTHER PTHR10108 1 186 2.1E-21 T 19-04-2016 AMED_8735 c95c487f6656e5cf0097a9d89725846d 206 Pfam PF08241 Methyltransferase domain 2 91 1.0E-18 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_8735 c95c487f6656e5cf0097a9d89725846d 206 SUPERFAMILY SSF53335 1 165 9.31E-27 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8735 c95c487f6656e5cf0097a9d89725846d 206 Gene3D G3DSA:3.40.50.150 1 205 2.9E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8735 c95c487f6656e5cf0097a9d89725846d 206 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 1 28 - T 19-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMED_3840 c5a2da6d9419f5ce712a96f43761ec3f 477 PANTHER PTHR11699 1 474 4.8E-179 T 19-04-2016 AMED_3840 c5a2da6d9419f5ce712a96f43761ec3f 477 SUPERFAMILY SSF53720 6 475 9.03E-149 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_3840 c5a2da6d9419f5ce712a96f43761ec3f 477 Gene3D G3DSA:3.40.605.10 8 263 6.4E-87 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_3840 c5a2da6d9419f5ce712a96f43761ec3f 477 Gene3D G3DSA:3.40.309.10 264 449 3.5E-53 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_3840 c5a2da6d9419f5ce712a96f43761ec3f 477 Pfam PF00171 Aldehyde dehydrogenase family 15 474 4.6E-146 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_3762 94be03eac700ed96691afae679b0f76d 253 Pfam PF00314 Thaumatin family 41 201 1.5E-28 T 19-04-2016 IPR001938 Thaumatin AMED_3762 94be03eac700ed96691afae679b0f76d 253 PANTHER PTHR31048:SF31 1 12 2.2E-24 T 19-04-2016 AMED_3762 94be03eac700ed96691afae679b0f76d 253 PANTHER PTHR31048:SF31 36 249 2.2E-24 T 19-04-2016 AMED_3762 94be03eac700ed96691afae679b0f76d 253 SUPERFAMILY SSF49870 36 250 3.4E-34 T 19-04-2016 IPR001938 Thaumatin AMED_3762 94be03eac700ed96691afae679b0f76d 253 SMART SM00205 37 250 1.4E-12 T 19-04-2016 IPR001938 Thaumatin AMED_3762 94be03eac700ed96691afae679b0f76d 253 Gene3D G3DSA:2.60.110.10 36 249 9.5E-39 T 19-04-2016 IPR001938 Thaumatin AMED_3762 94be03eac700ed96691afae679b0f76d 253 PANTHER PTHR31048 1 12 2.2E-24 T 19-04-2016 IPR001938 Thaumatin AMED_3762 94be03eac700ed96691afae679b0f76d 253 PANTHER PTHR31048 36 249 2.2E-24 T 19-04-2016 IPR001938 Thaumatin AMED_3762 94be03eac700ed96691afae679b0f76d 253 PIRSF PIRSF002703 1 252 3.5E-30 T 19-04-2016 IPR001938 Thaumatin AMED_2441 f576fa2fd46ae4effd9cb8447c914f67 426 Gene3D G3DSA:3.40.190.10 165 355 9.9E-30 T 19-04-2016 AMED_2441 f576fa2fd46ae4effd9cb8447c914f67 426 PANTHER PTHR30061:SF28 18 419 3.1E-95 T 19-04-2016 AMED_2441 f576fa2fd46ae4effd9cb8447c914f67 426 SUPERFAMILY SSF53850 37 423 2.57E-52 T 19-04-2016 AMED_2441 f576fa2fd46ae4effd9cb8447c914f67 426 PANTHER PTHR30061 18 419 3.1E-95 T 19-04-2016 AMED_2441 f576fa2fd46ae4effd9cb8447c914f67 426 Pfam PF13416 Bacterial extracellular solute-binding protein 54 358 1.3E-31 T 19-04-2016 AMED_2441 f576fa2fd46ae4effd9cb8447c914f67 426 Gene3D G3DSA:3.40.190.10 50 164 4.9E-8 T 19-04-2016 AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 Gene3D G3DSA:1.10.10.10 7 107 1.3E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PANTHER PTHR38600 1 113 2.9E-15 T 19-04-2016 AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PANTHER PTHR38600:SF1 1 113 2.9E-15 T 19-04-2016 AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 SUPERFAMILY SSF46785 8 100 3.25E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 Pfam PF12840 Helix-turn-helix domain 9 61 9.5E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 1.8E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 1.8E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.8E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4720 a6a58bc1657fbdfdd2f3d79e564ef4eb 114 SMART SM00418 8 87 6.0E-15 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_1074 2fad592c74b62d1f9a747fc52dbbf29b 324 SUPERFAMILY SSF56112 50 287 2.24E-16 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1074 2fad592c74b62d1f9a747fc52dbbf29b 324 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 40 276 1.3E-37 T 19-04-2016 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 AMED_8904 c0494f54ae1af7a5570981c4442c5a80 245 PANTHER PTHR10859:SF84 7 235 2.2E-45 T 19-04-2016 AMED_8904 c0494f54ae1af7a5570981c4442c5a80 245 Gene3D G3DSA:3.90.550.10 8 134 2.5E-13 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8904 c0494f54ae1af7a5570981c4442c5a80 245 Pfam PF00535 Glycosyl transferase family 2 11 129 9.4E-21 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_8904 c0494f54ae1af7a5570981c4442c5a80 245 PANTHER PTHR10859 7 235 2.2E-45 T 19-04-2016 AMED_8904 c0494f54ae1af7a5570981c4442c5a80 245 SUPERFAMILY SSF53448 8 213 5.2E-32 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_6549 b2797fb86675838cea84d9553b44b96d 73 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 7 65 1.4E-11 T 19-04-2016 IPR018691 Protein of unknown function DUF2188 AMED_7696 64536b6db47f50507c81bbc6c3db9aa9 360 Gene3D G3DSA:3.20.20.100 6 317 9.5E-93 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7696 64536b6db47f50507c81bbc6c3db9aa9 360 Pfam PF00248 Aldo/keto reductase family 20 317 2.4E-66 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7696 64536b6db47f50507c81bbc6c3db9aa9 360 SUPERFAMILY SSF51430 6 318 1.44E-92 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7696 64536b6db47f50507c81bbc6c3db9aa9 360 PANTHER PTHR11732 4 327 2.2E-113 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_7439 92a550179bcf11f766f45be5ed433f63 144 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 18 76 9.5E-7 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_7439 92a550179bcf11f766f45be5ed433f63 144 Gene3D G3DSA:2.30.110.10 16 116 5.2E-15 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7439 92a550179bcf11f766f45be5ed433f63 144 PANTHER PTHR35176 3 114 5.0E-17 T 19-04-2016 AMED_7439 92a550179bcf11f766f45be5ed433f63 144 PANTHER PTHR35176:SF1 3 114 5.0E-17 T 19-04-2016 AMED_7439 92a550179bcf11f766f45be5ed433f63 144 SUPERFAMILY SSF50475 16 116 4.86E-16 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1564 97a752872c8e660869980101bf5eb9d7 310 PANTHER PTHR30458 8 309 2.8E-166 T 19-04-2016 AMED_1564 97a752872c8e660869980101bf5eb9d7 310 Gene3D G3DSA:1.20.1260.10 21 276 1.3E-103 T 19-04-2016 IPR012347 Ferritin-related AMED_1564 97a752872c8e660869980101bf5eb9d7 310 Pfam PF05138 Phenylacetic acid catabolic protein 21 295 7.6E-104 T 19-04-2016 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 UniPathway: UPA00930 AMED_1564 97a752872c8e660869980101bf5eb9d7 310 SUPERFAMILY SSF47240 31 273 8.52E-83 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_1564 97a752872c8e660869980101bf5eb9d7 310 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 11 299 4.9E-156 T 19-04-2016 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149+1.14.13.14|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176|UniPathway: UPA00930 AMED_1564 97a752872c8e660869980101bf5eb9d7 310 PANTHER PTHR30458:SF0 8 309 2.8E-166 T 19-04-2016 AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 14 107 3.8E-23 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 PANTHER PTHR13794 1 381 1.6E-127 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 Gene3D G3DSA:3.20.20.120 117 340 9.6E-77 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 PANTHER PTHR13794:SF4 1 381 1.6E-127 T 19-04-2016 AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 Pfam PF13378 Enolase C-terminal domain-like 130 354 9.8E-61 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 SMART SM00922 125 231 2.3E-17 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 Gene3D G3DSA:3.30.390.10 1 116 5.5E-49 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 SUPERFAMILY SSF54826 1 112 5.3E-29 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_9068 0dffe4a7f28123f0ea145d00021578e8 381 SUPERFAMILY SSF51604 95 358 3.4E-68 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Gene3D G3DSA:3.40.50.2300 2 131 1.3E-22 T 19-04-2016 AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 SMART SM00850 160 257 1.3E-30 T 19-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 SMART SM00448 1 124 3.3E-10 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Gene3D G3DSA:2.40.50.40 151 218 7.7E-15 T 19-04-2016 AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 SUPERFAMILY SSF52172 2 132 4.27E-23 T 19-04-2016 IPR011006 CheY-like superfamily AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 PANTHER PTHR26402 2 130 8.4E-20 T 19-04-2016 AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Pfam PF04397 LytTr DNA-binding domain 162 256 2.4E-22 T 19-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 AMED_0134 c3af6c29fff9cb1d9e4c8ca7262908d8 263 Pfam PF00072 Response regulator receiver domain 2 124 2.2E-15 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_0431 c3165e2617b337af76316b3406ad3d47 482 Pfam PF00221 Aromatic amino acid lyase 13 432 4.2E-78 T 19-04-2016 IPR001106 Aromatic amino acid lyase AMED_0431 c3165e2617b337af76316b3406ad3d47 482 PANTHER PTHR10362 29 468 9.8E-43 T 19-04-2016 AMED_0431 c3165e2617b337af76316b3406ad3d47 482 Gene3D G3DSA:1.20.200.10 193 472 1.8E-40 T 19-04-2016 AMED_0431 c3165e2617b337af76316b3406ad3d47 482 Gene3D G3DSA:1.10.275.10 14 185 1.9E-37 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_0431 c3165e2617b337af76316b3406ad3d47 482 SUPERFAMILY SSF48557 10 477 1.65E-88 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_0431 c3165e2617b337af76316b3406ad3d47 482 PANTHER PTHR10362:SF7 29 468 9.8E-43 T 19-04-2016 AMED_7154 8619aea662b14fb5a5847915374eeada 239 SUPERFAMILY SSF52540 9 227 1.92E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7154 8619aea662b14fb5a5847915374eeada 239 SMART SM00382 30 232 4.1E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7154 8619aea662b14fb5a5847915374eeada 239 PANTHER PTHR24220 6 235 4.3E-74 T 19-04-2016 AMED_7154 8619aea662b14fb5a5847915374eeada 239 Pfam PF00005 ABC transporter 24 158 1.4E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7154 8619aea662b14fb5a5847915374eeada 239 Gene3D G3DSA:3.40.50.300 5 225 5.5E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7154 8619aea662b14fb5a5847915374eeada 239 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7154 8619aea662b14fb5a5847915374eeada 239 PANTHER PTHR24220:SF568 6 235 4.3E-74 T 19-04-2016 AMED_1660 977451dee999653f4913067686f65c11 398 Gene3D G3DSA:3.90.1150.10 251 374 1.3E-42 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_1660 977451dee999653f4913067686f65c11 398 PIRSF PIRSF005572 1 384 5.4E-118 T 19-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AMED_1660 977451dee999653f4913067686f65c11 398 Pfam PF00266 Aminotransferase class-V 3 370 1.6E-65 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_1660 977451dee999653f4913067686f65c11 398 PANTHER PTHR11601 1 383 1.4E-149 T 19-04-2016 AMED_1660 977451dee999653f4913067686f65c11 398 SUPERFAMILY SSF53383 1 377 2.82E-95 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1660 977451dee999653f4913067686f65c11 398 Gene3D G3DSA:3.40.640.10 14 250 4.3E-77 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1660 977451dee999653f4913067686f65c11 398 PANTHER PTHR11601:SF20 1 383 1.4E-149 T 19-04-2016 AMED_3172 b7619155bc48ecab02947468af087102 282 Pfam PF00296 Luciferase-like monooxygenase 12 250 6.2E-48 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3172 b7619155bc48ecab02947468af087102 282 PANTHER PTHR30011:SF24 19 236 1.7E-57 T 19-04-2016 AMED_3172 b7619155bc48ecab02947468af087102 282 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 6 229 2.1E-87 T 19-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c AMED_3172 b7619155bc48ecab02947468af087102 282 Gene3D G3DSA:3.20.20.30 4 252 1.8E-69 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3172 b7619155bc48ecab02947468af087102 282 PANTHER PTHR30011 19 236 1.7E-57 T 19-04-2016 AMED_3172 b7619155bc48ecab02947468af087102 282 SUPERFAMILY SSF51679 4 280 9.42E-65 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 PANTHER PTHR11751:SF436 13 99 3.4E-20 T 19-04-2016 AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 Pfam PF07729 FCD domain 84 205 2.1E-28 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 Gene3D G3DSA:1.20.120.530 79 216 3.2E-35 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 SUPERFAMILY SSF48008 83 215 2.22E-29 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 PANTHER PTHR11751 13 99 3.4E-20 T 19-04-2016 AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 73 5.0E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 Gene3D G3DSA:1.10.10.10 9 73 8.6E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 SMART SM00895 83 207 3.2E-23 T 19-04-2016 IPR011711 GntR, C-terminal AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 SMART SM00345 15 73 7.8E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6994 0eab0775da7cefb5df05e75b92113b78 217 SUPERFAMILY SSF46785 9 100 7.03E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 Gene3D G3DSA:3.40.50.2300 173 338 2.6E-57 T 19-04-2016 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 SUPERFAMILY SSF47413 8 66 3.92E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 Gene3D G3DSA:1.10.260.40 9 64 1.6E-20 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 SUPERFAMILY SSF53822 67 342 2.94E-74 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 SMART SM00354 8 78 2.4E-19 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 53 4.3E-14 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 PANTHER PTHR30146:SF59 8 340 6.6E-112 T 19-04-2016 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 PANTHER PTHR30146 8 340 6.6E-112 T 19-04-2016 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 Gene3D G3DSA:3.40.50.2300 65 172 4.0E-32 T 19-04-2016 AMED_9139 1b977526f44fb60748a7dbc73c48c629 345 Pfam PF13377 Periplasmic binding protein-like domain 176 336 9.9E-38 T 19-04-2016 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 PANTHER PTHR24362 1 368 2.2E-90 T 19-04-2016 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Gene3D G3DSA:1.10.510.10 105 344 7.6E-43 T 19-04-2016 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Gene3D G3DSA:3.30.200.20 8 102 1.5E-22 T 19-04-2016 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SMART SM00740 470 536 0.011 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SMART SM00740 403 469 1.5E-8 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SMART SM00740 606 673 4.4E-5 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SMART SM00740 538 604 0.0012 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 142 154 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Pfam PF03793 PASTA domain 606 668 4.3E-9 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Pfam PF03793 PASTA domain 544 592 3.5E-5 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Pfam PF03793 PASTA domain 474 536 5.2E-8 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Pfam PF03793 PASTA domain 408 469 2.6E-9 T 19-04-2016 IPR005543 PASTA domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SUPERFAMILY SSF56112 15 357 2.34E-71 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 Pfam PF00069 Protein kinase domain 17 275 2.8E-42 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SUPERFAMILY SSF54184 606 669 9.42E-5 T 19-04-2016 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 SMART SM00220 17 285 1.6E-55 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_2318 6e0aec3d5c8475c732e379b449a20c44 673 PANTHER PTHR24362:SF160 1 368 2.2E-90 T 19-04-2016 AMED_2406 48c4d117ba5356d99a20dfe87d15e87a 516 Pfam PF13600 N-terminal domain of unknown function (DUF4140) 11 101 2.8E-18 T 19-04-2016 IPR025554 Domain of unknown function DUF4140 AMED_2406 48c4d117ba5356d99a20dfe87d15e87a 516 Pfam PF13598 Domain of unknown function (DUF4139) 200 506 5.7E-79 T 19-04-2016 IPR011935 Conserved hypothetical protein CHP02231 AMED_2406 48c4d117ba5356d99a20dfe87d15e87a 516 PANTHER PTHR31005 8 516 9.5E-75 T 19-04-2016 AMED_2406 48c4d117ba5356d99a20dfe87d15e87a 516 TIGRFAM TIGR02231 TIGR02231: conserved hypothetical protein 8 511 3.8E-96 T 19-04-2016 IPR011935 Conserved hypothetical protein CHP02231 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993 558 582 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993 357 538 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993 24 134 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993 176 244 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 Gene3D G3DSA:1.10.645.10 15 575 2.2E-152 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMED_3795 259e75726637d17403b73edd11b15b66 598 SUPERFAMILY SSF56762 18 575 2.35E-107 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993:SF11 558 582 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993:SF11 357 538 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993:SF11 24 134 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 PANTHER PTHR11993:SF11 176 244 6.8E-50 T 19-04-2016 AMED_3795 259e75726637d17403b73edd11b15b66 598 Pfam PF00374 Nickel-dependent hydrogenase 181 575 1.0E-42 T 19-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AMED_3795 259e75726637d17403b73edd11b15b66 598 Pfam PF00374 Nickel-dependent hydrogenase 57 140 5.0E-18 T 19-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AMED_1410 ed7ca0af7153ff6f60c81a1dcb23702b 379 Pfam PF05050 Methyltransferase FkbM domain 121 252 1.3E-7 T 19-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_1410 ed7ca0af7153ff6f60c81a1dcb23702b 379 SUPERFAMILY SSF53335 76 236 7.41E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1410 ed7ca0af7153ff6f60c81a1dcb23702b 379 Gene3D G3DSA:3.40.50.150 88 202 4.4E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8020 bac9bbfb286b0f20123fd9c180a854fc 253 PANTHER PTHR35864 7 253 5.6E-27 T 19-04-2016 AMED_7886 c5e2fb5f7ae5cb97d78ac224f646490a 268 PIRSF PIRSF017393 1 268 2.1E-93 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_7886 c5e2fb5f7ae5cb97d78ac224f646490a 268 Gene3D G3DSA:3.40.50.150 2 267 6.9E-100 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7886 c5e2fb5f7ae5cb97d78ac224f646490a 268 Pfam PF04672 S-adenosyl methyltransferase 7 267 1.5E-85 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_7886 c5e2fb5f7ae5cb97d78ac224f646490a 268 SUPERFAMILY SSF53335 11 256 2.29E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 Pfam PF02541 Ppx/GppA phosphatase family 24 294 1.2E-48 T 19-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 SUPERFAMILY SSF53067 126 295 5.72E-28 T 19-04-2016 AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 PANTHER PTHR30005 1 289 1.1E-49 T 19-04-2016 AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 PANTHER PTHR30005:SF0 1 289 1.1E-49 T 19-04-2016 AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 SUPERFAMILY SSF53067 1 122 2.03E-23 T 19-04-2016 AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 Gene3D G3DSA:3.30.420.40 1 119 1.8E-25 T 19-04-2016 AMED_2977 51f3a1a3c946e21f7bbc99d69191f8cb 305 Gene3D G3DSA:3.30.420.150 122 294 2.8E-34 T 19-04-2016 AMED_7404 0528d684a34c41623366a0a03d353460 436 PANTHER PTHR10742 8 406 4.9E-39 T 19-04-2016 AMED_7404 0528d684a34c41623366a0a03d353460 436 Gene3D G3DSA:3.50.50.60 5 106 1.4E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7404 0528d684a34c41623366a0a03d353460 436 Gene3D G3DSA:3.50.50.60 188 329 1.4E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7404 0528d684a34c41623366a0a03d353460 436 PRINTS PR00419 Adrenodoxin reductase family signature 8 30 1.3E-5 T 19-04-2016 AMED_7404 0528d684a34c41623366a0a03d353460 436 PRINTS PR00419 Adrenodoxin reductase family signature 31 44 1.3E-5 T 19-04-2016 AMED_7404 0528d684a34c41623366a0a03d353460 436 PANTHER PTHR10742:SF266 8 406 4.9E-39 T 19-04-2016 AMED_7404 0528d684a34c41623366a0a03d353460 436 SUPERFAMILY SSF51905 8 307 1.77E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7404 0528d684a34c41623366a0a03d353460 436 Pfam PF01593 Flavin containing amine oxidoreductase 16 364 2.0E-34 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_7305 184cebe4fc41d4e233d7d2cf91c30049 158 SUPERFAMILY SSF102405 2 154 9.15E-11 T 19-04-2016 AMED_7305 184cebe4fc41d4e233d7d2cf91c30049 158 Gene3D G3DSA:3.40.50.450 23 154 1.8E-6 T 19-04-2016 AMED_7305 184cebe4fc41d4e233d7d2cf91c30049 158 PANTHER PTHR38440 2 158 4.7E-12 T 19-04-2016 AMED_8609 daf08df7c191851061266bedc227cd11 514 PANTHER PTHR24095 5 513 1.7E-143 T 19-04-2016 AMED_8609 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:3.40.50.980 170 324 2.4E-34 T 19-04-2016 AMED_8609 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:3.40.50.980 16 169 1.2E-33 T 19-04-2016 AMED_8609 daf08df7c191851061266bedc227cd11 514 Pfam PF00501 AMP-binding enzyme 16 410 1.2E-87 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8609 daf08df7c191851061266bedc227cd11 514 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 5 502 1.4E-147 T 19-04-2016 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 AMED_8609 daf08df7c191851061266bedc227cd11 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 1.6E-18 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_8609 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:2.30.38.10 328 403 1.0E-17 T 19-04-2016 AMED_8609 daf08df7c191851061266bedc227cd11 514 SUPERFAMILY SSF56801 16 506 1.57E-137 T 19-04-2016 AMED_8609 daf08df7c191851061266bedc227cd11 514 Gene3D G3DSA:3.30.300.30 407 506 2.7E-30 T 19-04-2016 AMED_3083 41b862a9dd94f08bb9badc30a7f3d4b3 223 SUPERFAMILY SSF52255 90 218 3.79E-22 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_3083 41b862a9dd94f08bb9badc30a7f3d4b3 223 PANTHER PTHR23046 7 221 9.6E-80 T 19-04-2016 AMED_3083 41b862a9dd94f08bb9badc30a7f3d4b3 223 SMART SM01001 89 221 3.1E-22 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_3083 41b862a9dd94f08bb9badc30a7f3d4b3 223 Gene3D G3DSA:3.40.50.7700 90 216 4.7E-20 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_3083 41b862a9dd94f08bb9badc30a7f3d4b3 223 PANTHER PTHR23046:SF3 7 221 9.6E-80 T 19-04-2016 AMED_3083 41b862a9dd94f08bb9badc30a7f3d4b3 223 Pfam PF00731 AIR carboxylase 91 215 6.4E-12 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMED_7799 8e5b0ca4b64cc47254ffc7c31567634a 237 Gene3D G3DSA:1.20.1260.10 53 229 1.5E-55 T 19-04-2016 IPR012347 Ferritin-related AMED_7799 8e5b0ca4b64cc47254ffc7c31567634a 237 Pfam PF03713 Domain of unknown function (DUF305) 60 227 3.9E-45 T 19-04-2016 IPR005183 Domain of unknown function DUF305 AMED_7799 8e5b0ca4b64cc47254ffc7c31567634a 237 PANTHER PTHR36933:SF1 5 237 4.7E-26 T 19-04-2016 AMED_7799 8e5b0ca4b64cc47254ffc7c31567634a 237 PANTHER PTHR36933 5 237 4.7E-26 T 19-04-2016 AMED_5984 7faa194da3536c168bda3a10319113ca 423 SUPERFAMILY SSF51126 22 420 6.52E-32 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_5984 7faa194da3536c168bda3a10319113ca 423 Gene3D G3DSA:2.160.20.10 50 336 7.6E-14 T 19-04-2016 IPR012334 Pectin lyase fold AMED_5984 7faa194da3536c168bda3a10319113ca 423 Pfam PF13229 Right handed beta helix region 139 326 7.4E-6 T 19-04-2016 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 Pfam PF12802 MarR family 27 92 2.9E-11 T 19-04-2016 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 SMART SM00347 29 128 3.1E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 Gene3D G3DSA:1.10.10.10 4 138 4.5E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 6.5E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 6.5E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 6.5E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 PANTHER PTHR33164 50 152 1.8E-13 T 19-04-2016 AMED_2141 c9bcc0905f20c9e275261d44b87c781e 154 SUPERFAMILY SSF46785 6 139 1.44E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2005 ea2a5783ea4db52daa48769ff08232fe 171 Pfam PF06114 Domain of unknown function (DUF955) 61 115 9.0E-5 T 19-04-2016 IPR010359 HTH domain, IrrE-type AMED_3174 69517fec5752afc5b65ef42032baf90a 171 Pfam PF04542 Sigma-70 region 2 28 87 1.2E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3174 69517fec5752afc5b65ef42032baf90a 171 Gene3D G3DSA:1.10.10.10 105 168 1.3E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3174 69517fec5752afc5b65ef42032baf90a 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 167 2.0E-18 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3174 69517fec5752afc5b65ef42032baf90a 171 PANTHER PTHR30173 6 168 8.4E-30 T 19-04-2016 AMED_3174 69517fec5752afc5b65ef42032baf90a 171 Gene3D G3DSA:1.10.1740.10 6 95 2.3E-22 T 19-04-2016 AMED_3174 69517fec5752afc5b65ef42032baf90a 171 SUPERFAMILY SSF88946 6 89 2.24E-20 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3174 69517fec5752afc5b65ef42032baf90a 171 SUPERFAMILY SSF88659 103 168 3.92E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3174 69517fec5752afc5b65ef42032baf90a 171 Pfam PF08281 Sigma-70, region 4 112 163 3.1E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5983 16e14ab49a23b6483b873ffb895e6542 142 SUPERFAMILY SSF56112 7 121 6.38E-6 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 Pfam PF00953 Glycosyl transferase family 4 88 277 2.9E-37 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 46 58 7.7E-6 T 19-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 3 352 23.11 T 19-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 ProSitePatterns PS01348 MraY family signature 2. 181 192 - T 19-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 ProSitePatterns PS01347 MraY family signature 1. 46 58 - T 19-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 15 348 1.8E-88 T 19-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 PANTHER PTHR22926 228 354 3.9E-127 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 PANTHER PTHR22926 4 212 3.9E-127 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 PANTHER PTHR22926:SF5 228 354 3.9E-127 T 19-04-2016 AMED_6254 7ce4f70e457a2f8c2da5227cf8ac21d4 360 PANTHER PTHR22926:SF5 4 212 3.9E-127 T 19-04-2016 AMED_2540 8bfa013adcc41bdec2d3bf06cb7e0679 200 PANTHER PTHR39335 81 187 3.2E-28 T 19-04-2016 AMED_2540 8bfa013adcc41bdec2d3bf06cb7e0679 200 Pfam PF03640 Secreted repeat of unknown function 139 179 2.4E-14 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_2540 8bfa013adcc41bdec2d3bf06cb7e0679 200 Pfam PF03640 Secreted repeat of unknown function 81 121 1.5E-10 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 SUPERFAMILY SSF53633 9 238 1.14E-70 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 PANTHER PTHR21499:SF23 9 239 1.1E-105 T 19-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 PANTHER PTHR21499 9 239 1.1E-105 T 19-04-2016 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 239 3.8E-87 T 19-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 Gene3D G3DSA:3.40.1160.10 9 239 1.3E-85 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 PIRSF PIRSF005650 5 245 4.8E-86 T 19-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 239 42.294 T 19-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMED_1975 b949e73e206c37cdc25106aab1614ce1 247 Pfam PF00696 Amino acid kinase family 11 218 8.2E-31 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 Gene3D G3DSA:3.40.605.10 44 307 1.7E-65 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 PANTHER PTHR11699 22 540 1.8E-254 T 19-04-2016 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 PANTHER PTHR11699:SF18 22 540 1.8E-254 T 19-04-2016 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 321 332 - T 19-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 Pfam PF00171 Aldehyde dehydrogenase family 56 522 1.8E-101 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 SUPERFAMILY SSF53720 9 527 1.14E-123 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 293 300 - T 19-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 Gene3D G3DSA:3.40.309.10 308 505 7.8E-45 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMED_2661 21a4e2a04dc03f58c1ce367d7bced497 542 TIGRFAM TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase 11 541 4.2E-239 T 19-04-2016 IPR005931 Delta-1-pyrroline-5-carboxylate dehydrogenase GO:0003842|GO:0006537|GO:0006561 KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853|UniPathway: UPA00261 AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 11 204 9.3E-78 T 19-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 Gene3D G3DSA:3.40.470.10 14 209 2.6E-62 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 PANTHER PTHR33693 7 209 4.4E-95 T 19-04-2016 AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 25 196 2.2E-38 T 19-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 SMART SM00987 39 203 2.5E-36 T 19-04-2016 AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 PANTHER PTHR33693:SF3 7 209 4.4E-95 T 19-04-2016 AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 Pfam PF03167 Uracil DNA glycosylase superfamily 39 200 3.1E-36 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 SMART SM00986 39 203 2.5E-36 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_5202 b6918b55dd86cc6e715a29578b2d4418 210 SUPERFAMILY SSF52141 14 209 1.67E-52 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 Gene3D G3DSA:3.90.76.10 44 171 2.0E-21 T 19-04-2016 AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 SUPERFAMILY SSF53850 32 512 2.71E-75 T 19-04-2016 AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 PIRSF PIRSF002741 2 525 2.7E-51 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 Gene3D G3DSA:3.10.105.10 296 495 2.7E-28 T 19-04-2016 AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 411 5.1E-49 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 Gene3D G3DSA:3.40.190.10 187 295 2.7E-13 T 19-04-2016 AMED_3462 bd654cd8136c036370f50ad4392a46ba 527 PANTHER PTHR30290 1 512 1.1E-62 T 19-04-2016 AMED_7407 2d42858c1b07f3b2014e183de70a288a 254 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 4 129 8.6E-24 T 19-04-2016 IPR025847 MEDS domain AMED_4668 bf73eef099a8ab327b8839267d325891 161 PANTHER PTHR10264 3 137 3.4E-22 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_4668 bf73eef099a8ab327b8839267d325891 161 SUPERFAMILY SSF117892 34 144 1.83E-12 T 19-04-2016 IPR001107 Band 7 domain AMED_4668 bf73eef099a8ab327b8839267d325891 161 Pfam PF01145 SPFH domain / Band 7 family 7 144 5.9E-14 T 19-04-2016 IPR001107 Band 7 domain AMED_4668 bf73eef099a8ab327b8839267d325891 161 SMART SM00244 3 159 2.1E-10 T 19-04-2016 IPR001107 Band 7 domain AMED_9102 aac5f7eb243f984084f04829087e57ad 626 Pfam PF13454 FAD-NAD(P)-binding 10 184 8.7E-37 T 19-04-2016 AMED_9102 aac5f7eb243f984084f04829087e57ad 626 SUPERFAMILY SSF51971 122 189 2.41E-8 T 19-04-2016 AMED_9102 aac5f7eb243f984084f04829087e57ad 626 SUPERFAMILY SSF51971 7 58 2.41E-8 T 19-04-2016 AMED_9102 aac5f7eb243f984084f04829087e57ad 626 Gene3D G3DSA:3.50.50.60 10 190 2.1E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7550 0554db91053a26c4c8e16a0c8261fd0a 172 Pfam PF04268 Sarcosine oxidase, gamma subunit family 22 91 2.3E-6 T 19-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMED_7550 0554db91053a26c4c8e16a0c8261fd0a 172 Pfam PF04268 Sarcosine oxidase, gamma subunit family 110 168 4.0E-6 T 19-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMED_0446 51825e9998acd3e3ba1f1d518231e60b 169 PANTHER PTHR40758 24 108 1.7E-12 T 19-04-2016 AMED_0446 51825e9998acd3e3ba1f1d518231e60b 169 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 16 153 9.3E-16 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_0446 51825e9998acd3e3ba1f1d518231e60b 169 SUPERFAMILY SSF109854 2 80 4.35E-6 T 19-04-2016 AMED_0446 51825e9998acd3e3ba1f1d518231e60b 169 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 16 83 1.9E-7 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_0446 51825e9998acd3e3ba1f1d518231e60b 169 Pfam PF07398 MDMPI C-terminal domain 99 167 1.4E-8 T 19-04-2016 IPR010872 MDMPI C-terminal AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 Pfam PF03949 Malic enzyme, NAD binding domain 169 386 2.3E-19 T 19-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 SMART SM01274 22 155 1.9E-70 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 PANTHER PTHR23406:SF33 38 391 1.9E-159 T 19-04-2016 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 PANTHER PTHR23406 38 391 1.9E-159 T 19-04-2016 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 SMART SM00919 167 387 9.0E-105 T 19-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 Pfam PF00390 Malic enzyme, N-terminal domain 24 155 9.1E-25 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 Gene3D G3DSA:3.40.50.10380 20 164 6.5E-48 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 PIRSF PIRSF000106 12 393 4.6E-68 T 19-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 SUPERFAMILY SSF51735 167 392 4.13E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 Gene3D G3DSA:3.40.50.720 165 386 2.2E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7961 2f21ff83a6ea6429b1263bc3ea7dd796 393 SUPERFAMILY SSF53223 17 165 1.58E-49 T 19-04-2016 AMED_4500 601a0644616768846216797f99ac6598 150 SUPERFAMILY SSF55804 1 147 4.97E-37 T 19-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 AMED_4500 601a0644616768846216797f99ac6598 150 PANTHER PTHR30505 5 147 3.8E-30 T 19-04-2016 AMED_4500 601a0644616768846216797f99ac6598 150 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 7 132 8.4E-35 T 19-04-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- AMED_4500 601a0644616768846216797f99ac6598 150 Gene3D G3DSA:3.40.930.10 2 148 1.6E-43 T 19-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- AMED_4500 601a0644616768846216797f99ac6598 150 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 2.8E-35 T 19-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 Gene3D G3DSA:1.10.357.10 60 200 1.1E-16 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 61 1.7E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 SUPERFAMILY SSF46689 5 79 5.49E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 3.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 3.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 PANTHER PTHR30055 2 145 4.4E-35 T 19-04-2016 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 Gene3D G3DSA:1.10.10.60 7 59 4.3E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6510 48eb7cb0f22dc10ec3bf68f90a091c84 211 PANTHER PTHR30055:SF54 2 145 4.4E-35 T 19-04-2016 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.0E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.0E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 PANTHER PTHR30328:SF4 1 183 3.2E-33 T 19-04-2016 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 SUPERFAMILY SSF48498 78 162 7.91E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3256 609a3da85792c3385654b5e564b46fb9 185 Gene3D G3DSA:1.10.357.10 9 183 7.2E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 SUPERFAMILY SSF46689 9 78 1.13E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 PANTHER PTHR30328 1 183 3.2E-33 T 19-04-2016 AMED_3256 609a3da85792c3385654b5e564b46fb9 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 9.9E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 Gene3D G3DSA:3.40.50.720 1 259 1.6E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 SUPERFAMILY SSF51735 1 259 2.88E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PANTHER PTHR24322:SF166 168 200 3.1E-20 T 19-04-2016 AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PANTHER PTHR24322:SF166 47 152 3.1E-20 T 19-04-2016 AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PANTHER PTHR24322:SF166 10 29 3.1E-20 T 19-04-2016 AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 8.9E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.9E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PANTHER PTHR24322 168 200 3.1E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PANTHER PTHR24322 47 152 3.1E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 PANTHER PTHR24322 10 29 3.1E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9261 9fc18fbfd695e1cb89363e6a13c8c1a2 303 Pfam PF00106 short chain dehydrogenase 6 204 1.1E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 Gene3D G3DSA:3.40.50.720 6 232 2.2E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PANTHER PTHR24322:SF365 152 186 2.5E-65 T 19-04-2016 AMED_0253 162963b08088db27a789b45b7900c583 270 PANTHER PTHR24322:SF365 11 136 2.5E-65 T 19-04-2016 AMED_0253 162963b08088db27a789b45b7900c583 270 PANTHER PTHR24322 152 186 2.5E-65 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PANTHER PTHR24322 11 136 2.5E-65 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.1E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.1E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.1E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.1E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.1E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 SUPERFAMILY SSF51735 1 257 3.69E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0253 162963b08088db27a789b45b7900c583 270 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_0253 162963b08088db27a789b45b7900c583 270 Pfam PF00106 short chain dehydrogenase 7 198 2.7E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0253 162963b08088db27a789b45b7900c583 270 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 1.5E-4 T 19-04-2016 AMED_6066 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 PANTHER PTHR30344:SF1 44 375 2.0E-84 T 19-04-2016 AMED_6066 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 SUPERFAMILY SSF51004 65 355 5.36E-46 T 19-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AMED_6066 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 Pfam PF10282 Lactonase, 7-bladed beta-propeller 44 374 8.3E-88 T 19-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 AMED_6066 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 PANTHER PTHR30344 44 375 2.0E-84 T 19-04-2016 AMED_6066 d4c9b3c5a5258dcfd9655ee8b6a9e2aa 375 Gene3D G3DSA:2.130.10.10 44 375 2.9E-80 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_9174 958dcd275055866ce58eab2fce216ddf 143 Pfam PF05331 Protein of unknown function (DUF742) 32 143 1.2E-31 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_9174 958dcd275055866ce58eab2fce216ddf 143 PANTHER PTHR36221 10 143 6.0E-27 T 19-04-2016 AMED_9174 958dcd275055866ce58eab2fce216ddf 143 Gene3D G3DSA:1.10.10.10 85 128 6.7E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6963 40dcddd4149c888ea226009eaa561b94 357 SMART SM00839 144 353 1.9E-47 T 19-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 216 294 1.7E-9 T 19-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 SUPERFAMILY SSF51735 141 352 1.28E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6963 40dcddd4149c888ea226009eaa561b94 357 Gene3D G3DSA:3.40.192.10 10 147 1.8E-64 T 19-04-2016 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 66 80 8.0E-19 T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 176 196 8.0E-19 T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 132 154 8.0E-19 T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 288 299 8.0E-19 T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 14 131 1.7E-28 T 19-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PANTHER PTHR11606 25 355 1.5E-130 T 19-04-2016 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 74 87 - T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 Gene3D G3DSA:3.40.50.720 148 338 4.3E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6963 40dcddd4149c888ea226009eaa561b94 357 SUPERFAMILY SSF53223 10 144 3.52E-46 T 19-04-2016 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PANTHER PTHR11606:SF3 25 355 1.5E-130 T 19-04-2016 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 AMED_6963 40dcddd4149c888ea226009eaa561b94 357 PIRSF PIRSF000188 4 355 1.1E-139 T 19-04-2016 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 AMED_4077 0a0d61aad67d41d28183e90696895a00 272 Pfam PF04240 Protein of unknown function (DUF422) 47 252 1.2E-32 T 19-04-2016 IPR007354 Carotene biosynthesis associated membrane protein AMED_4077 0a0d61aad67d41d28183e90696895a00 272 PANTHER PTHR39419 47 260 4.0E-19 T 19-04-2016 IPR007354 Carotene biosynthesis associated membrane protein AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 SUPERFAMILY SSF52096 15 259 4.39E-61 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 Pfam PF01039 Carboxyl transferase domain 41 514 4.2E-136 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 PANTHER PTHR22855:SF31 1 525 0.0 T 19-04-2016 AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 Gene3D G3DSA:3.90.226.10 267 515 2.9E-76 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 Gene3D G3DSA:3.90.226.10 20 261 1.6E-62 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 SUPERFAMILY SSF52096 225 506 8.5E-76 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2887 d2ddc2c62b9d51debb964d78ecd8fa3b 525 PANTHER PTHR22855 1 525 0.0 T 19-04-2016 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Gene3D G3DSA:3.40.190.10 107 175 7.4E-12 T 19-04-2016 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PANTHER PTHR30346 5 301 4.1E-55 T 19-04-2016 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.3E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.3E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.3E-9 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Pfam PF03466 LysR substrate binding domain 93 294 7.9E-23 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 SUPERFAMILY SSF53850 95 296 9.87E-21 T 19-04-2016 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Gene3D G3DSA:1.10.10.10 5 86 5.8E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.3E-21 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 PANTHER PTHR30346:SF6 5 301 4.1E-55 T 19-04-2016 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 Gene3D G3DSA:3.40.190.10 176 268 5.4E-16 T 19-04-2016 AMED_2026 7a8cc5b0302fe531cbd5bfea0fabfe9a 301 SUPERFAMILY SSF46785 3 115 5.71E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0303 e47841cf618b7c6b09e2b619da3df256 221 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 210 4.1E-16 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0303 e47841cf618b7c6b09e2b619da3df256 221 SUPERFAMILY SSF52266 32 219 4.58E-25 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0303 e47841cf618b7c6b09e2b619da3df256 221 PANTHER PTHR30383:SF5 32 219 3.1E-13 T 19-04-2016 AMED_0303 e47841cf618b7c6b09e2b619da3df256 221 PANTHER PTHR30383 32 219 3.1E-13 T 19-04-2016 AMED_0303 e47841cf618b7c6b09e2b619da3df256 221 Gene3D G3DSA:3.40.50.1110 36 219 5.4E-22 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_2946 d81e5856eaf9d178348f92005c75a61f 144 SUPERFAMILY SSF82784 4 135 2.09E-34 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_2946 d81e5856eaf9d178348f92005c75a61f 144 PANTHER PTHR33797 3 143 8.7E-43 T 19-04-2016 AMED_2946 d81e5856eaf9d178348f92005c75a61f 144 PANTHER PTHR33797:SF1 3 143 8.7E-43 T 19-04-2016 AMED_2946 d81e5856eaf9d178348f92005c75a61f 144 Pfam PF02566 OsmC-like protein 43 138 3.8E-19 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_2946 d81e5856eaf9d178348f92005c75a61f 144 Gene3D G3DSA:3.30.300.20 3 143 5.7E-45 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_2946 d81e5856eaf9d178348f92005c75a61f 144 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 4 141 5.3E-47 T 19-04-2016 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 AMED_3497 8bfcf09c64b9c7d04b718d457302f0b8 83 Pfam PF00550 Phosphopantetheine attachment site 12 77 2.6E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3497 8bfcf09c64b9c7d04b718d457302f0b8 83 SMART SM00823 Phosphopantetheine attachment site 10 81 0.0012 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3497 8bfcf09c64b9c7d04b718d457302f0b8 83 SUPERFAMILY SSF47336 8 80 1.11E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3497 8bfcf09c64b9c7d04b718d457302f0b8 83 Gene3D G3DSA:1.10.1200.10 8 81 9.1E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 293 1.1E-10 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 SUPERFAMILY SSF47384 213 295 5.69E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 399 2.6E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 443 2.6E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 2.6E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 2.6E-13 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 PANTHER PTHR24423:SF399 169 445 3.0E-69 T 19-04-2016 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 SUPERFAMILY SSF55874 285 444 5.11E-34 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 Gene3D G3DSA:1.10.287.130 220 291 2.3E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 Pfam PF00672 HAMP domain 158 225 6.5E-10 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 SMART SM00387 336 445 5.7E-32 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 Gene3D G3DSA:3.30.565.10 308 444 2.4E-36 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 SUPERFAMILY SSF158472 179 226 2.48E-5 T 19-04-2016 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 PANTHER PTHR24423 169 445 3.0E-69 T 19-04-2016 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 SMART SM00304 176 229 1.7E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 SMART SM00388 230 295 9.2E-11 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_8649 02da232dfb266d5fe8a21a5f74fed5b1 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 444 1.1E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8668 7909464634507fdc366705481964bd00 501 Pfam PF06738 Putative threonine/serine exporter 75 317 1.4E-65 T 19-04-2016 IPR010619 Putative threonine/serine exporter AMED_8668 7909464634507fdc366705481964bd00 501 Pfam PF12821 Threonine/Serine exporter, ThrE 348 467 4.1E-15 T 19-04-2016 IPR024528 Threonine/Serine exporter, ThrE AMED_8668 7909464634507fdc366705481964bd00 501 PANTHER PTHR31082 72 487 4.4E-68 T 19-04-2016 AMED_8668 7909464634507fdc366705481964bd00 501 PANTHER PTHR31082:SF6 72 487 4.4E-68 T 19-04-2016 AMED_3982 c5014bbc6b11d786e1281689b24c3623 245 PANTHER PTHR10992:SF810 4 237 1.4E-67 T 19-04-2016 AMED_3982 c5014bbc6b11d786e1281689b24c3623 245 Pfam PF12697 Alpha/beta hydrolase family 6 229 1.9E-15 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3982 c5014bbc6b11d786e1281689b24c3623 245 SUPERFAMILY SSF53474 6 233 1.82E-29 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3982 c5014bbc6b11d786e1281689b24c3623 245 PANTHER PTHR10992 4 237 1.4E-67 T 19-04-2016 AMED_3982 c5014bbc6b11d786e1281689b24c3623 245 Gene3D G3DSA:3.40.50.1820 4 235 2.5E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2387 d45a9210348e69a539e5859afa489dbe 417 Pfam PF05977 Transmembrane secretion effector 7 406 7.5E-30 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_2387 d45a9210348e69a539e5859afa489dbe 417 Gene3D G3DSA:1.20.1250.20 220 399 3.2E-13 T 19-04-2016 AMED_2387 d45a9210348e69a539e5859afa489dbe 417 Gene3D G3DSA:1.20.1250.20 20 195 6.9E-15 T 19-04-2016 AMED_2387 d45a9210348e69a539e5859afa489dbe 417 PANTHER PTHR23513 1 406 3.6E-59 T 19-04-2016 AMED_2387 d45a9210348e69a539e5859afa489dbe 417 SUPERFAMILY SSF103473 12 401 1.44E-43 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 PANTHER PTHR11751 41 87 1.6E-14 T 19-04-2016 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 PANTHER PTHR11751 133 157 1.6E-14 T 19-04-2016 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 Gene3D G3DSA:3.40.1410.10 82 251 1.0E-50 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 SUPERFAMILY SSF46785 22 89 7.08E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 SMART SM00866 105 245 1.8E-37 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 37 84 4.5E-10 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 9.0E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 9.0E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 SMART SM00345 24 85 0.0033 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 Pfam PF07702 UTRA domain 105 244 8.7E-40 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 Gene3D G3DSA:1.10.10.10 35 81 2.5E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 PANTHER PTHR11751:SF333 41 87 1.6E-14 T 19-04-2016 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 PANTHER PTHR11751:SF333 133 157 1.6E-14 T 19-04-2016 AMED_1372 d8c26efd088e5c1b293eafa159dc2c8c 256 SUPERFAMILY SSF64288 73 252 3.14E-46 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 6.1E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 6.1E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 6.1E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 158 186 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 SUPERFAMILY SSF51735 5 269 1.13E-73 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 TIGRFAM TIGR03971 SDR_subfam_1: SDR family mycofactocin-dependent oxidoreductase 6 270 3.2E-108 T 19-04-2016 IPR023985 Mycofactocin-dependent oxidoreductase AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PANTHER PTHR24322 171 202 6.0E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PANTHER PTHR24322 13 32 6.0E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PANTHER PTHR24322 53 155 6.0E-51 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 268 1.5E-55 T 19-04-2016 AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 Gene3D G3DSA:3.40.50.720 4 267 6.4E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 9.7E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 161 9.7E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 97 108 9.7E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 9.7E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 190 9.7E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7177 46805e65ddf4702d47b1d68caad5452f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 9.7E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 Pfam PF00364 Biotin-requiring enzyme 4 73 1.9E-17 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 SUPERFAMILY SSF51230 3 76 1.44E-21 T 19-04-2016 IPR011053 Single hybrid motif AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 Gene3D G3DSA:3.30.559.10 162 387 1.5E-71 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 SUPERFAMILY SSF47005 120 160 3.27E-10 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 Gene3D G3DSA:4.10.320.10 116 161 2.3E-15 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 Gene3D G3DSA:2.40.50.100 4 75 1.4E-20 T 19-04-2016 AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 PANTHER PTHR23151 1 386 4.8E-121 T 19-04-2016 AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 166 387 3.2E-71 T 19-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 SUPERFAMILY SSF52777 166 388 6.23E-71 T 19-04-2016 AMED_7569 2d664b6ee321846e158c8df9b2673b93 391 Pfam PF02817 e3 binding domain 123 156 5.4E-12 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMED_2172 8dc768d02cb561152603dff836c08059 319 SUPERFAMILY SSF160631 206 254 3.53E-7 T 19-04-2016 AMED_2172 8dc768d02cb561152603dff836c08059 319 SMART SM00860 221 310 5.7E-4 T 19-04-2016 IPR018958 SMI1/KNR4-like domain AMED_2172 8dc768d02cb561152603dff836c08059 319 Gene3D G3DSA:3.40.1580.10 221 252 3.9E-4 T 19-04-2016 IPR018958 SMI1/KNR4-like domain AMED_8292 fb6785226125560a98406d47dad8f4bf 219 Pfam PF01638 HxlR-like helix-turn-helix 18 97 3.5E-17 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_8292 fb6785226125560a98406d47dad8f4bf 219 SUPERFAMILY SSF46785 7 109 1.25E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8292 fb6785226125560a98406d47dad8f4bf 219 PANTHER PTHR33204 1 103 1.6E-23 T 19-04-2016 AMED_8292 fb6785226125560a98406d47dad8f4bf 219 SUPERFAMILY SSF55718 109 205 2.06E-8 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_8292 fb6785226125560a98406d47dad8f4bf 219 Gene3D G3DSA:1.10.10.10 7 98 5.6E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8292 fb6785226125560a98406d47dad8f4bf 219 PANTHER PTHR33204:SF9 1 103 1.6E-23 T 19-04-2016 AMED_4692 27a1f9a312e41a3c9a4fb463688ff79a 144 PANTHER PTHR36929:SF1 7 143 9.2E-14 T 19-04-2016 AMED_4692 27a1f9a312e41a3c9a4fb463688ff79a 144 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 16 142 1.5E-25 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_4692 27a1f9a312e41a3c9a4fb463688ff79a 144 PANTHER PTHR36929 7 143 9.2E-14 T 19-04-2016 AMED_4692 27a1f9a312e41a3c9a4fb463688ff79a 144 Gene3D G3DSA:3.30.530.20 6 143 7.3E-32 T 19-04-2016 IPR023393 START-like domain AMED_4692 27a1f9a312e41a3c9a4fb463688ff79a 144 SUPERFAMILY SSF55961 6 143 1.49E-32 T 19-04-2016 AMED_7672 d34b98ec78aa6e3b6d501d807671bf5c 264 SUPERFAMILY SSF53474 3 249 8.84E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7672 d34b98ec78aa6e3b6d501d807671bf5c 264 Gene3D G3DSA:3.40.50.1820 2 249 3.0E-35 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7672 d34b98ec78aa6e3b6d501d807671bf5c 264 PANTHER PTHR10992 8 264 5.4E-12 T 19-04-2016 AMED_7672 d34b98ec78aa6e3b6d501d807671bf5c 264 Pfam PF12697 Alpha/beta hydrolase family 38 251 1.6E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4504 5eca4550a490ddb14c4706b625efdebc 575 Pfam PF00899 ThiF family 347 476 7.5E-9 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_4504 5eca4550a490ddb14c4706b625efdebc 575 SUPERFAMILY SSF55729 49 194 1.86E-11 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4504 5eca4550a490ddb14c4706b625efdebc 575 Gene3D G3DSA:3.40.50.720 350 476 2.5E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4504 5eca4550a490ddb14c4706b625efdebc 575 SUPERFAMILY SSF69572 342 476 7.98E-15 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_4504 5eca4550a490ddb14c4706b625efdebc 575 Gene3D G3DSA:3.40.630.30 53 181 1.4E-10 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7868 30c1521b543f0db383e6df9366b70185 407 Gene3D G3DSA:1.20.1250.20 219 391 1.4E-10 T 19-04-2016 AMED_7868 30c1521b543f0db383e6df9366b70185 407 Gene3D G3DSA:1.20.1250.20 15 193 6.4E-11 T 19-04-2016 AMED_7868 30c1521b543f0db383e6df9366b70185 407 SUPERFAMILY SSF103473 14 391 9.81E-35 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7868 30c1521b543f0db383e6df9366b70185 407 Pfam PF07690 Major Facilitator Superfamily 22 357 3.1E-25 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7868 30c1521b543f0db383e6df9366b70185 407 PANTHER PTHR23513 4 402 2.8E-55 T 19-04-2016 AMED_9037 bd0f26202a1cf8388f1b83c0a06127a3 79 Pfam PF04149 Domain of unknown function (DUF397) 17 70 2.1E-19 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_6592 919dd5979a8db242c3cde33682d99946 149 SMART SM00347 31 133 7.4E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6592 919dd5979a8db242c3cde33682d99946 149 PANTHER PTHR33164 39 147 1.6E-13 T 19-04-2016 AMED_6592 919dd5979a8db242c3cde33682d99946 149 Pfam PF12802 MarR family 45 97 6.6E-10 T 19-04-2016 AMED_6592 919dd5979a8db242c3cde33682d99946 149 Gene3D G3DSA:1.10.10.10 11 146 6.1E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6592 919dd5979a8db242c3cde33682d99946 149 SUPERFAMILY SSF46785 12 145 4.46E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3103 13d43885c553eb5aaf86aaaaf813dcdd 66 PANTHER PTHR38444 2 62 2.8E-25 T 19-04-2016 AMED_3103 13d43885c553eb5aaf86aaaaf813dcdd 66 PANTHER PTHR38444:SF1 2 62 2.8E-25 T 19-04-2016 AMED_3103 13d43885c553eb5aaf86aaaaf813dcdd 66 SMART SM00923 1 48 2.1E-20 T 19-04-2016 IPR005153 MbtH-like protein AMED_3103 13d43885c553eb5aaf86aaaaf813dcdd 66 SUPERFAMILY SSF160582 3 64 3.4E-27 T 19-04-2016 AMED_3103 13d43885c553eb5aaf86aaaaf813dcdd 66 Gene3D G3DSA:3.90.820.10 6 64 2.8E-30 T 19-04-2016 AMED_3103 13d43885c553eb5aaf86aaaaf813dcdd 66 Pfam PF03621 MbtH-like protein 2 48 1.1E-22 T 19-04-2016 IPR005153 MbtH-like protein AMED_5529 34a876e31f610c211af5afdb8cea355e 149 PANTHER PTHR11686:SF12 4 149 4.6E-65 T 19-04-2016 AMED_5529 34a876e31f610c211af5afdb8cea355e 149 Pfam PF01019 Gamma-glutamyltranspeptidase 27 148 2.8E-31 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_5529 34a876e31f610c211af5afdb8cea355e 149 PANTHER PTHR11686 4 149 4.6E-65 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_5529 34a876e31f610c211af5afdb8cea355e 149 SUPERFAMILY SSF56235 3 146 1.66E-42 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_5529 34a876e31f610c211af5afdb8cea355e 149 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 34 59 1.1E-13 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_5529 34a876e31f610c211af5afdb8cea355e 149 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 104 122 1.1E-13 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_5529 34a876e31f610c211af5afdb8cea355e 149 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 122 141 1.1E-13 T 19-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 SUPERFAMILY SSF54909 64 148 6.17E-13 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 Gene3D G3DSA:3.30.70.920 56 148 5.9E-17 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 SUPERFAMILY SSF46785 3 62 5.46E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 3.0E-13 T 19-04-2016 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 PANTHER PTHR30154 1 148 1.2E-40 T 19-04-2016 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 SMART SM00344 3 112 1.0E-30 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 Gene3D G3DSA:1.10.10.10 2 54 3.0E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.5E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.5E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.5E-14 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 PANTHER PTHR30154:SF28 1 148 1.2E-40 T 19-04-2016 AMED_3706 0449ebfc9b83c81669a23ea6c4cdcb04 159 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 3.0E-11 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_7846 0c921bfb2c467810c14e249708f0ad4b 520 PIRSF PIRSF026631 21 507 1.5E-68 T 19-04-2016 IPR014529 Uncharacterised conserved protein UCP026631 AMED_7846 0c921bfb2c467810c14e249708f0ad4b 520 PANTHER PTHR34473 20 492 3.2E-71 T 19-04-2016 AMED_7846 0c921bfb2c467810c14e249708f0ad4b 520 PANTHER PTHR34473:SF1 20 492 3.2E-71 T 19-04-2016 AMED_7846 0c921bfb2c467810c14e249708f0ad4b 520 Pfam PF03703 Bacterial PH domain 82 163 7.7E-10 T 19-04-2016 IPR005182 Domain of unknown function DUF304 AMED_7846 0c921bfb2c467810c14e249708f0ad4b 520 Pfam PF03703 Bacterial PH domain 426 498 7.0E-6 T 19-04-2016 IPR005182 Domain of unknown function DUF304 AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 PIRSF PIRSF000709 1 177 4.0E-16 T 19-04-2016 AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 PANTHER PTHR23029 3 203 3.4E-49 T 19-04-2016 AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 SMART SM00855 5 160 1.2E-18 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 19-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 199 2.0E-54 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 SUPERFAMILY SSF53254 3 201 2.13E-58 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6693 0a10b49c211af18725aa1d8e724fcf4c 204 Gene3D G3DSA:3.40.50.1240 3 202 3.6E-59 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 SUPERFAMILY SSF55200 103 187 7.46E-30 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 SUPERFAMILY SSF54364 23 96 7.98E-28 T 19-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 ProSitePatterns PS00938 Initiation factor 3 signature. 76 89 - T 19-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 Gene3D G3DSA:3.30.110.10 97 188 2.6E-36 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 25 187 4.3E-60 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 PANTHER PTHR10938 6 187 1.8E-64 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 102 185 2.5E-33 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 25 93 1.7E-29 T 19-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 19 188 29.258 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMED_6056 46785784cac92f6a6723c2d03d5aac72 205 Gene3D G3DSA:3.10.20.80 21 95 1.4E-34 T 19-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 2.9E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 Gene3D G3DSA:1.10.357.10 7 110 2.9E-20 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 SUPERFAMILY SSF46689 7 91 9.23E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 PANTHER PTHR30055:SF74 5 108 4.5E-18 T 19-04-2016 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3644 ed2c32d1586e7db4577bf4fd5603be88 214 PANTHER PTHR30055 5 108 4.5E-18 T 19-04-2016 AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 65 128 4.2E-12 T 19-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 228 293 8.0E-13 T 19-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 Gene3D G3DSA:2.40.50.140 81 131 2.2E-4 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 Gene3D G3DSA:2.40.50.140 233 297 9.0E-5 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 PANTHER PTHR34075:SF1 125 319 7.8E-78 T 19-04-2016 AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 SUPERFAMILY SSF50249 5 131 3.43E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 193 225 5.1E-11 T 19-04-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 PANTHER PTHR34075 125 319 7.8E-78 T 19-04-2016 AMED_2557 a20f729ea5506ca2ad642b24bd0cada3 325 SUPERFAMILY SSF50249 165 300 3.6E-38 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1543 9b8a587d6a9184c71f25311bdc46b3d2 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 296 6.3E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1543 9b8a587d6a9184c71f25311bdc46b3d2 315 PANTHER PTHR30151 30 311 2.6E-85 T 19-04-2016 AMED_1543 9b8a587d6a9184c71f25311bdc46b3d2 315 PANTHER PTHR30151:SF16 30 311 2.6E-85 T 19-04-2016 AMED_1543 9b8a587d6a9184c71f25311bdc46b3d2 315 Gene3D G3DSA:1.10.3720.10 107 299 4.5E-22 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1543 9b8a587d6a9184c71f25311bdc46b3d2 315 SUPERFAMILY SSF161098 108 293 7.85E-28 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PANTHER PTHR24322 161 193 5.0E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PANTHER PTHR24322 21 145 5.0E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 Pfam PF00106 short chain dehydrogenase 17 203 8.8E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 4.2E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 4.2E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.2E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.0E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 3.0E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.0E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.0E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 3.0E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 191 2.5E-4 T 19-04-2016 AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 SUPERFAMILY SSF51735 13 263 7.17E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9113 c37c89b453144cebf5215bc27c64f69d 303 Gene3D G3DSA:3.40.50.720 11 204 1.9E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0690 28bb4c366c0281d6ecb27bb08e923a26 61 SUPERFAMILY SSF57716 4 61 4.28E-22 T 19-04-2016 AMED_0690 28bb4c366c0281d6ecb27bb08e923a26 61 Gene3D G3DSA:4.10.830.10 1 61 3.7E-28 T 19-04-2016 AMED_0690 28bb4c366c0281d6ecb27bb08e923a26 61 PANTHER PTHR19836 13 61 4.2E-35 T 19-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0690 28bb4c366c0281d6ecb27bb08e923a26 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 2.1E-25 T 19-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0690 28bb4c366c0281d6ecb27bb08e923a26 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 19-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 AMED_0690 28bb4c366c0281d6ecb27bb08e923a26 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.795 T 19-04-2016 IPR023053 Ribosomal protein S14, type Z AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 Pfam PF08704 tRNA methyltransferase complex GCD14 subunit 73 234 2.1E-22 T 19-04-2016 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829 AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 Pfam PF14801 tRNA methyltransferase complex GCD14 subunit N-term 4 54 9.1E-29 T 19-04-2016 AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 PANTHER PTHR12133:SF1 5 260 1.0E-93 T 19-04-2016 AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 Gene3D G3DSA:3.40.50.150 70 273 4.4E-64 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 Gene3D G3DSA:3.10.330.20 4 67 1.6E-30 T 19-04-2016 AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 SUPERFAMILY SSF53335 6 257 1.86E-71 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 PIRSF PIRSF017269 1 267 1.7E-85 T 19-04-2016 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829 AMED_4909 184c73e56184fa8ffa9f528b7bf1cd78 276 PANTHER PTHR12133 5 260 1.0E-93 T 19-04-2016 AMED_8014 0510d658a7ee3b69765dfbc97636fc23 73 Gene3D G3DSA:2.20.25.10 12 59 3.3E-14 T 19-04-2016 AMED_8014 0510d658a7ee3b69765dfbc97636fc23 73 Pfam PF03966 Trm112p-like protein 7 50 4.2E-8 T 19-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 AMED_8014 0510d658a7ee3b69765dfbc97636fc23 73 SUPERFAMILY SSF158997 6 63 1.24E-14 T 19-04-2016 AMED_3091 546603ebd7e00a73c84e2b52215f4665 341 PANTHER PTHR32196 1 340 6.9E-61 T 19-04-2016 AMED_3091 546603ebd7e00a73c84e2b52215f4665 341 PANTHER PTHR32196:SF21 1 340 6.9E-61 T 19-04-2016 AMED_3091 546603ebd7e00a73c84e2b52215f4665 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 329 1.3E-39 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 PANTHER PTHR10909 40 335 3.5E-59 T 19-04-2016 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 Gene3D G3DSA:1.20.140.10 223 340 1.2E-20 T 19-04-2016 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 SUPERFAMILY SSF56645 3 215 6.41E-32 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 339 3.6E-15 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 SUPERFAMILY SSF47203 234 359 5.8E-21 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 114 2.0E-14 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 Gene3D G3DSA:2.40.110.10 121 216 3.8E-6 T 19-04-2016 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 Gene3D G3DSA:1.10.540.10 39 114 3.0E-16 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_2509 8393e7812a04c59a420be56e3966bc17 362 PANTHER PTHR10909:SF341 40 335 3.5E-59 T 19-04-2016 AMED_5969 508090d9a6570888f862f969517bdebc 482 SUPERFAMILY SSF51905 6 226 1.3E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5969 508090d9a6570888f862f969517bdebc 482 SUPERFAMILY SSF51905 295 403 1.3E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5969 508090d9a6570888f862f969517bdebc 482 Pfam PF00743 Flavin-binding monooxygenase-like 8 213 2.0E-11 T 19-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_5969 508090d9a6570888f862f969517bdebc 482 Gene3D G3DSA:3.50.50.60 317 458 2.4E-6 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5969 508090d9a6570888f862f969517bdebc 482 Gene3D G3DSA:3.50.50.60 2 210 1.1E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5969 508090d9a6570888f862f969517bdebc 482 PANTHER PTHR23023 1 466 1.5E-209 T 19-04-2016 AMED_5969 508090d9a6570888f862f969517bdebc 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.1E-5 T 19-04-2016 AMED_5969 508090d9a6570888f862f969517bdebc 482 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 2.1E-5 T 19-04-2016 AMED_5969 508090d9a6570888f862f969517bdebc 482 PANTHER PTHR23023:SF30 1 466 1.5E-209 T 19-04-2016 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PANTHER PTHR11739 19 381 1.2E-235 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PANTHER PTHR11739:SF14 19 381 1.2E-235 T 19-04-2016 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 SUPERFAMILY SSF48256 19 369 1.7E-93 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 Gene3D G3DSA:1.10.230.10 237 321 2.4E-22 T 19-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 Pfam PF00285 Citrate synthase, C-terminal domain 22 358 3.1E-82 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 ProSitePatterns PS00480 Citrate synthase signature. 257 269 - T 19-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 309 325 5.5E-24 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 175 190 5.5E-24 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 197 225 5.5E-24 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 250 270 5.5E-24 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 PRINTS PR00143 Citrate synthase signature 329 343 5.5E-24 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_8451 cdb234d32315dfcaed8567305d9f57af 382 Gene3D G3DSA:1.10.580.10 28 236 8.3E-47 T 19-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 AMED_3340 834af5a0efde9f6270db80d25c5d828c 204 PANTHER PTHR21327 26 204 5.9E-81 T 19-04-2016 AMED_3340 834af5a0efde9f6270db80d25c5d828c 204 Pfam PF00925 GTP cyclohydrolase II 24 173 9.2E-60 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_3340 834af5a0efde9f6270db80d25c5d828c 204 SUPERFAMILY SSF142695 9 174 4.58E-55 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMED_4193 abafa59221df01b5acef26bb5a67266f 131 PANTHER PTHR33495:SF2 18 125 1.1E-19 T 19-04-2016 AMED_4193 abafa59221df01b5acef26bb5a67266f 131 Gene3D G3DSA:3.30.750.24 20 121 2.7E-17 T 19-04-2016 IPR002645 STAS domain AMED_4193 abafa59221df01b5acef26bb5a67266f 131 Pfam PF13466 STAS domain 28 104 1.8E-14 T 19-04-2016 IPR002645 STAS domain AMED_4193 abafa59221df01b5acef26bb5a67266f 131 PANTHER PTHR33495 18 125 1.1E-19 T 19-04-2016 AMED_4193 abafa59221df01b5acef26bb5a67266f 131 SUPERFAMILY SSF52091 19 119 1.35E-17 T 19-04-2016 IPR002645 STAS domain AMED_6603 5ba0766043724ef2770481839712879a 302 Pfam PF00005 ABC transporter 23 159 4.2E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6603 5ba0766043724ef2770481839712879a 302 SUPERFAMILY SSF52540 5 222 1.31E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6603 5ba0766043724ef2770481839712879a 302 PANTHER PTHR24220 8 236 1.4E-94 T 19-04-2016 AMED_6603 5ba0766043724ef2770481839712879a 302 SMART SM00382 31 207 7.1E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6603 5ba0766043724ef2770481839712879a 302 Gene3D G3DSA:3.40.50.300 5 219 2.5E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6603 5ba0766043724ef2770481839712879a 302 PANTHER PTHR24220:SF364 8 236 1.4E-94 T 19-04-2016 AMED_6603 5ba0766043724ef2770481839712879a 302 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 Pfam PF07690 Major Facilitator Superfamily 17 347 3.7E-37 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 SUPERFAMILY SSF103473 245 451 1.44E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 SUPERFAMILY SSF103473 8 194 1.44E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 Gene3D G3DSA:1.20.1250.20 12 190 5.8E-31 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 PANTHER PTHR23501:SF61 10 451 1.1E-117 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 Gene3D G3DSA:1.20.1250.20 262 453 3.3E-16 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 ProSitePatterns PS00216 Sugar transport proteins signature 1. 66 82 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 299 323 7.3E-7 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 7.3E-7 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 7.3E-7 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 7.3E-7 T 19-04-2016 AMED_4174 d69e4c044464be5d43330331fa8ed1ec 466 PANTHER PTHR23501 10 451 1.1E-117 T 19-04-2016 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 Gene3D G3DSA:3.30.1330.50 1 152 1.3E-53 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 153 30.093 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 Pfam PF02542 YgbB family 1 151 2.5E-47 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 19-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 PANTHER PTHR32125 2 155 3.4E-34 T 19-04-2016 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 152 3.0E-46 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_8680 d954c8c26da44e488345d66b943ff6e7 155 SUPERFAMILY SSF69765 1 152 2.62E-49 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMED_2759 4447ccbdc6b2ab2be35edc5e2f2f403a 699 Hamap MF_00983 Probable primosomal protein N' [priA]. 55 698 19.959 T 19-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMED_2759 4447ccbdc6b2ab2be35edc5e2f2f403a 699 PANTHER PTHR30580 40 699 3.5E-132 T 19-04-2016 AMED_2759 4447ccbdc6b2ab2be35edc5e2f2f403a 699 SUPERFAMILY SSF52540 222 296 6.38E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3575 3a9eacf0075b3d82dc787f6619d72814 286 SUPERFAMILY SSF51735 2 275 1.52E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3575 3a9eacf0075b3d82dc787f6619d72814 286 PANTHER PTHR14194 1 282 3.6E-44 T 19-04-2016 AMED_3575 3a9eacf0075b3d82dc787f6619d72814 286 PANTHER PTHR14194:SF21 1 282 3.6E-44 T 19-04-2016 AMED_3575 3a9eacf0075b3d82dc787f6619d72814 286 Pfam PF13460 NAD(P)H-binding 6 180 1.1E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3575 3a9eacf0075b3d82dc787f6619d72814 286 Gene3D G3DSA:3.40.50.720 2 214 7.7E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7129 f6acdb1fde7c99a9f97846792c5610ac 484 Gene3D G3DSA:1.20.1250.20 22 197 5.0E-28 T 19-04-2016 AMED_7129 f6acdb1fde7c99a9f97846792c5610ac 484 Gene3D G3DSA:1.20.1250.20 272 470 8.8E-17 T 19-04-2016 AMED_7129 f6acdb1fde7c99a9f97846792c5610ac 484 PANTHER PTHR23501 5 466 3.6E-83 T 19-04-2016 AMED_7129 f6acdb1fde7c99a9f97846792c5610ac 484 Pfam PF07690 Major Facilitator Superfamily 25 415 3.0E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7129 f6acdb1fde7c99a9f97846792c5610ac 484 SUPERFAMILY SSF103473 207 468 4.32E-23 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7129 f6acdb1fde7c99a9f97846792c5610ac 484 SUPERFAMILY SSF103473 11 199 4.45E-35 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8297 365326af8e6563f8341f001a69f55b60 204 PIRSF PIRSF006324 1 202 9.3E-55 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_8297 365326af8e6563f8341f001a69f55b60 204 PANTHER PTHR30086 1 201 5.8E-61 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_8297 365326af8e6563f8341f001a69f55b60 204 Pfam PF01810 LysE type translocator 10 202 6.5E-35 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_8297 365326af8e6563f8341f001a69f55b60 204 PANTHER PTHR30086:SF2 1 201 5.8E-61 T 19-04-2016 AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 36 226 1.9E-45 T 19-04-2016 AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 201 5.0E-4 T 19-04-2016 AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 100 116 2.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 164 2.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 145 2.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 211 2.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 53 64 2.3E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 SUPERFAMILY SSF51735 3 226 2.67E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 113 141 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 Gene3D G3DSA:3.40.50.720 37 226 1.1E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 145 1.9E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 53 64 1.9E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 114 1.9E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 Gene3D G3DSA:3.40.50.720 3 36 6.8E-6 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PANTHER PTHR24322 126 157 5.1E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6969 f131adac0dc45ebd624c7c97d6b13dfb 230 PANTHER PTHR24322 7 110 5.1E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3714 a5dd5ac6c7d38d423a4c746ce367f8fb 74 SUPERFAMILY SSF51735 1 62 7.81E-11 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3714 a5dd5ac6c7d38d423a4c746ce367f8fb 74 Gene3D G3DSA:3.40.50.720 1 58 7.2E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1019 9e0fb67b4388a5f5a96db6281f0c4313 121 SMART SM00345 17 76 3.4E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1019 9e0fb67b4388a5f5a96db6281f0c4313 121 PANTHER PTHR38445 1 118 5.0E-13 T 19-04-2016 AMED_1019 9e0fb67b4388a5f5a96db6281f0c4313 121 Gene3D G3DSA:1.10.10.10 5 77 1.3E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1019 9e0fb67b4388a5f5a96db6281f0c4313 121 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 3.9E-15 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1019 9e0fb67b4388a5f5a96db6281f0c4313 121 PANTHER PTHR38445:SF2 1 118 5.0E-13 T 19-04-2016 AMED_1019 9e0fb67b4388a5f5a96db6281f0c4313 121 SUPERFAMILY SSF46785 6 80 1.85E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 SUPERFAMILY SSF48179 179 278 1.36E-27 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2 177 1.8E-47 T 19-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 180 276 5.3E-28 T 19-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 PIRSF PIRSF000105 1 279 6.1E-70 T 19-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 Gene3D G3DSA:3.40.50.720 2 181 6.7E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 PANTHER PTHR23309 2 279 3.0E-98 T 19-04-2016 AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 SUPERFAMILY SSF51735 2 179 6.43E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4061 e6d3ac6407ab07bd7c166692e39f0863 279 Gene3D G3DSA:1.10.1040.10 182 276 1.3E-25 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_0943 58ca4dfb30cadaafdf64fbd9923bbeb7 297 Gene3D G3DSA:3.20.20.30 3 292 2.1E-44 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0943 58ca4dfb30cadaafdf64fbd9923bbeb7 297 PANTHER PTHR30011 19 222 3.3E-29 T 19-04-2016 AMED_0943 58ca4dfb30cadaafdf64fbd9923bbeb7 297 SUPERFAMILY SSF51679 11 293 1.09E-40 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0943 58ca4dfb30cadaafdf64fbd9923bbeb7 297 Pfam PF00296 Luciferase-like monooxygenase 10 223 2.8E-36 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3914 721a3bc0204598902db80fa3fbe73d13 293 PANTHER PTHR32243:SF31 18 293 3.7E-121 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_3914 721a3bc0204598902db80fa3fbe73d13 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 285 2.6E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3914 721a3bc0204598902db80fa3fbe73d13 293 PANTHER PTHR32243 18 293 3.7E-121 T 19-04-2016 AMED_3914 721a3bc0204598902db80fa3fbe73d13 293 SUPERFAMILY SSF161098 22 293 5.49E-72 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3914 721a3bc0204598902db80fa3fbe73d13 293 Gene3D G3DSA:1.10.3720.10 30 280 8.1E-65 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4969 3e853556f3be8b8ad3bfa5359867c4af 458 SUPERFAMILY SSF140453 14 89 2.62E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_4969 3e853556f3be8b8ad3bfa5359867c4af 458 Gene3D G3DSA:1.10.287.1060 12 93 4.0E-4 T 19-04-2016 AMED_8262 af9b8f22ea034a7baf8b08f9948c7980 189 SUPERFAMILY SSF53335 25 180 2.81E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8262 af9b8f22ea034a7baf8b08f9948c7980 189 Gene3D G3DSA:3.40.50.150 34 177 2.7E-23 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8262 af9b8f22ea034a7baf8b08f9948c7980 189 Pfam PF08241 Methyltransferase domain 38 131 6.2E-16 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_8262 af9b8f22ea034a7baf8b08f9948c7980 189 PANTHER PTHR10108 34 174 3.6E-15 T 19-04-2016 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PANTHER PTHR10992:SF884 164 273 3.9E-68 T 19-04-2016 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PANTHER PTHR10992:SF884 5 146 3.9E-68 T 19-04-2016 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 Pfam PF12697 Alpha/beta hydrolase family 23 265 7.6E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PANTHER PTHR10992 164 273 3.9E-68 T 19-04-2016 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PANTHER PTHR10992 5 146 3.9E-68 T 19-04-2016 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 SUPERFAMILY SSF53474 5 273 1.88E-49 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 Gene3D G3DSA:3.40.50.1820 5 272 2.0E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 27 45 7.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 248 270 7.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 104 117 7.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5679 6d8bca8d5cb1b272033663240e98083f 278 PRINTS PR00412 Epoxide hydrolase signature 47 62 7.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 33 244 9.1E-30 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 Gene3D G3DSA:3.30.1780.10 17 155 9.4E-29 T 19-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 PANTHER PTHR13812:SF19 15 346 1.0E-31 T 19-04-2016 AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 Gene3D G3DSA:3.40.50.720 156 316 5.2E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 PIRSF PIRSF001439 11 346 7.7E-48 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 SUPERFAMILY SSF51735 16 345 3.85E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6226 acf820211c03ff34a32b20a2d5cc0fdb 346 PANTHER PTHR13812 15 346 1.0E-31 T 19-04-2016 AMED_6611 d0dac678fb3ef0b73b24f6db1b2a995a 245 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 23 243 1.2E-50 T 19-04-2016 IPR015402 Protein of unknown function DUF1980 AMED_6611 d0dac678fb3ef0b73b24f6db1b2a995a 245 Pfam PF09323 Domain of unknown function (DUF1980) 8 105 8.5E-9 T 19-04-2016 IPR015402 Protein of unknown function DUF1980 AMED_1153 6a34df056a30277c73f81152c6ea7550 399 PANTHER PTHR18964:SF108 51 374 4.7E-48 T 19-04-2016 AMED_1153 6a34df056a30277c73f81152c6ea7550 399 PANTHER PTHR18964 51 374 4.7E-48 T 19-04-2016 AMED_1153 6a34df056a30277c73f81152c6ea7550 399 Gene3D G3DSA:3.30.420.40 73 211 4.7E-33 T 19-04-2016 AMED_1153 6a34df056a30277c73f81152c6ea7550 399 Gene3D G3DSA:1.10.10.10 2 65 2.7E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1153 6a34df056a30277c73f81152c6ea7550 399 Pfam PF00480 ROK family 77 349 8.7E-25 T 19-04-2016 IPR000600 ROK family AMED_1153 6a34df056a30277c73f81152c6ea7550 399 Gene3D G3DSA:3.30.420.40 212 351 1.3E-25 T 19-04-2016 AMED_1153 6a34df056a30277c73f81152c6ea7550 399 SUPERFAMILY SSF46785 2 63 1.36E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1153 6a34df056a30277c73f81152c6ea7550 399 SUPERFAMILY SSF53067 75 369 1.07E-31 T 19-04-2016 AMED_4984 e09745f3722426efeb7deb78555371ea 192 PANTHER PTHR30204:SF3 26 107 1.9E-54 T 19-04-2016 AMED_4984 e09745f3722426efeb7deb78555371ea 192 Gene3D G3DSA:1.10.1660.10 39 107 1.8E-12 T 19-04-2016 AMED_4984 e09745f3722426efeb7deb78555371ea 192 SUPERFAMILY SSF46955 37 118 6.41E-14 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4984 e09745f3722426efeb7deb78555371ea 192 Pfam PF13411 MerR HTH family regulatory protein 37 103 3.4E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4984 e09745f3722426efeb7deb78555371ea 192 PANTHER PTHR30204 26 107 1.9E-54 T 19-04-2016 AMED_4984 e09745f3722426efeb7deb78555371ea 192 SMART SM00422 34 106 3.6E-19 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_1887 2b277bd50e3ee0e7180fd111bbb14c12 332 Gene3D G3DSA:3.40.50.2300 170 300 1.3E-19 T 19-04-2016 AMED_1887 2b277bd50e3ee0e7180fd111bbb14c12 332 Gene3D G3DSA:3.40.50.2300 46 169 3.1E-28 T 19-04-2016 AMED_1887 2b277bd50e3ee0e7180fd111bbb14c12 332 Pfam PF13407 Periplasmic binding protein domain 52 296 3.0E-38 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1887 2b277bd50e3ee0e7180fd111bbb14c12 332 PANTHER PTHR30036:SF2 1 332 5.6E-65 T 19-04-2016 AMED_1887 2b277bd50e3ee0e7180fd111bbb14c12 332 SUPERFAMILY SSF53822 50 321 2.54E-51 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1887 2b277bd50e3ee0e7180fd111bbb14c12 332 PANTHER PTHR30036 1 332 5.6E-65 T 19-04-2016 AMED_8583 b3b7d315c12e3757359e571c22316520 251 SUPERFAMILY SSF46785 20 89 4.63E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8583 b3b7d315c12e3757359e571c22316520 251 Gene3D G3DSA:1.10.10.10 19 81 9.4E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8583 b3b7d315c12e3757359e571c22316520 251 PANTHER PTHR11751 37 87 8.7E-19 T 19-04-2016 AMED_8583 b3b7d315c12e3757359e571c22316520 251 PANTHER PTHR11751 133 156 8.7E-19 T 19-04-2016 AMED_8583 b3b7d315c12e3757359e571c22316520 251 Gene3D G3DSA:3.40.1410.10 82 248 6.2E-58 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_8583 b3b7d315c12e3757359e571c22316520 251 SMART SM00866 104 244 5.5E-46 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_8583 b3b7d315c12e3757359e571c22316520 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 3.2E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8583 b3b7d315c12e3757359e571c22316520 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 3.2E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8583 b3b7d315c12e3757359e571c22316520 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 36 83 1.5E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8583 b3b7d315c12e3757359e571c22316520 251 SMART SM00345 27 84 2.0E-12 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8583 b3b7d315c12e3757359e571c22316520 251 SUPERFAMILY SSF64288 72 248 2.67E-54 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_8583 b3b7d315c12e3757359e571c22316520 251 Pfam PF07702 UTRA domain 105 244 3.8E-45 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_8726 7833c0adea7f4c1bf8b3eeb9545f5973 121 SUPERFAMILY SSF47413 33 106 1.83E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8726 7833c0adea7f4c1bf8b3eeb9545f5973 121 Pfam PF13744 Helix-turn-helix domain 40 98 5.2E-13 T 19-04-2016 AMED_8726 7833c0adea7f4c1bf8b3eeb9545f5973 121 Gene3D G3DSA:1.10.260.40 37 104 7.2E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8726 7833c0adea7f4c1bf8b3eeb9545f5973 121 SMART SM00530 43 99 1.7E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7449 76a3f55827dc55f33d74fb9ec0aeda6e 241 SUPERFAMILY SSF53597 3 217 1.44E-24 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7449 76a3f55827dc55f33d74fb9ec0aeda6e 241 Gene3D G3DSA:3.40.430.10 1 217 1.4E-33 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7449 76a3f55827dc55f33d74fb9ec0aeda6e 241 PANTHER PTHR38011 2 219 2.5E-49 T 19-04-2016 AMED_7449 76a3f55827dc55f33d74fb9ec0aeda6e 241 Pfam PF01872 RibD C-terminal domain 3 187 1.3E-18 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_7449 76a3f55827dc55f33d74fb9ec0aeda6e 241 PANTHER PTHR38011:SF1 2 219 2.5E-49 T 19-04-2016 AMED_3315 c36301e424516da720289a728bc0682f 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 266 1.6E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3315 c36301e424516da720289a728bc0682f 272 Gene3D G3DSA:1.10.3720.10 5 259 6.0E-66 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3315 c36301e424516da720289a728bc0682f 272 SUPERFAMILY SSF161098 3 272 2.43E-71 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3315 c36301e424516da720289a728bc0682f 272 PANTHER PTHR32243:SF42 2 272 1.3E-117 T 19-04-2016 AMED_3315 c36301e424516da720289a728bc0682f 272 PANTHER PTHR32243 2 272 1.3E-117 T 19-04-2016 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 61 4.0E-15 T 19-04-2016 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PANTHER PTHR36923:SF1 1 63 2.2E-16 T 19-04-2016 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 SUPERFAMILY SSF54862 2 62 1.84E-14 T 19-04-2016 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PANTHER PTHR36923 1 63 2.2E-16 T 19-04-2016 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 Gene3D G3DSA:3.30.70.20 1 64 1.3E-17 T 19-04-2016 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 5.4E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 5.4E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7212 66199ca0bc95c1a23a1d9e3f6e5f2951 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 5.4E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_4890 71a1c9afe08f089fab84ebc7620bc0f7 452 PANTHER PTHR42307 1 452 0.0 T 19-04-2016 AMED_4890 71a1c9afe08f089fab84ebc7620bc0f7 452 Pfam PF03136 Pup-ligase protein 4 422 5.5E-157 T 19-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 AMED_4890 71a1c9afe08f089fab84ebc7620bc0f7 452 PANTHER PTHR42307:SF1 1 452 0.0 T 19-04-2016 AMED_4890 71a1c9afe08f089fab84ebc7620bc0f7 452 PIRSF PIRSF018077 1 452 5.1E-181 T 19-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 AMED_4890 71a1c9afe08f089fab84ebc7620bc0f7 452 Hamap MF_02111 Pup--protein ligase [pafA]. 1 452 50.989 T 19-04-2016 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 AMED_4890 71a1c9afe08f089fab84ebc7620bc0f7 452 TIGRFAM TIGR03686 pupylate_PafA: Pup--protein ligase 3 452 3.2E-235 T 19-04-2016 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 TIGRFAM TIGR00593 pola: DNA polymerase I 1 880 6.9E-299 T 19-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SMART SM00279 163 198 5.7E-14 T 19-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SUPERFAMILY SSF88723 2 160 1.57E-48 T 19-04-2016 IPR029060 PIN domain-like AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SUPERFAMILY SSF47807 161 274 6.13E-31 T 19-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SMART SM00474 292 471 1.0E-13 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SUPERFAMILY SSF56672 477 880 1.11E-137 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:1.20.1060.10 497 615 1.0E-30 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PANTHER PTHR10133 1 880 0.0 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SMART SM00475 1 251 4.5E-119 T 19-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Pfam PF01612 3'-5' exonuclease 326 427 6.5E-7 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:1.10.150.20 176 235 1.7E-24 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:1.10.150.20 665 771 1.3E-28 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:3.30.420.10 296 495 7.3E-52 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:3.30.70.370 616 664 6.0E-66 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:3.30.70.370 772 880 6.0E-66 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 1 160 8.1E-49 T 19-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 162 255 1.7E-26 T 19-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 828 841 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 798 814 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 630 645 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 744 755 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 653 676 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 683 696 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 707 732 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 766 777 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PRINTS PR00868 DNA-polymerase family A (pol I) signature 607 629 1.7E-73 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SMART SM00482 638 845 3.6E-113 T 19-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 SUPERFAMILY SSF53098 298 472 1.09E-30 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Pfam PF00476 DNA polymerase family A 504 879 3.0E-141 T 19-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 Gene3D G3DSA:3.40.50.1010 1 175 1.5E-60 T 19-04-2016 IPR029060 PIN domain-like AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 PANTHER PTHR10133:SF27 1 880 0.0 T 19-04-2016 AMED_6138 5f3ca357e068583622b1ce90a29a14ba 882 ProSitePatterns PS00447 DNA polymerase family A signature. 707 726 - T 19-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_0286 2dbf164ac143baa047aaf82731dc900d 325 PANTHER PTHR11732:SF185 1 324 7.2E-97 T 19-04-2016 AMED_0286 2dbf164ac143baa047aaf82731dc900d 325 Pfam PF00248 Aldo/keto reductase family 16 312 5.5E-60 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0286 2dbf164ac143baa047aaf82731dc900d 325 Gene3D G3DSA:3.20.20.100 1 313 2.5E-71 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0286 2dbf164ac143baa047aaf82731dc900d 325 SUPERFAMILY SSF51430 1 317 7.2E-76 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0286 2dbf164ac143baa047aaf82731dc900d 325 PANTHER PTHR11732 1 324 7.2E-97 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_2521 6a36bef26979094b49f755bec45236ea 533 SUPERFAMILY SSF51905 147 199 3.8E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 SUPERFAMILY SSF51905 458 520 3.8E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 SUPERFAMILY SSF51905 241 303 3.8E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 SUPERFAMILY SSF51905 1 116 3.8E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 SUPERFAMILY SSF56425 308 463 2.44E-14 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2521 6a36bef26979094b49f755bec45236ea 533 Gene3D G3DSA:3.90.700.10 318 446 2.8E-14 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMED_2521 6a36bef26979094b49f755bec45236ea 533 Pfam PF00890 FAD binding domain 7 493 1.0E-50 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMED_2521 6a36bef26979094b49f755bec45236ea 533 Gene3D G3DSA:3.50.50.60 460 519 2.2E-70 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 Gene3D G3DSA:3.50.50.60 242 306 2.2E-70 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 Gene3D G3DSA:3.50.50.60 6 199 2.2E-70 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2521 6a36bef26979094b49f755bec45236ea 533 PANTHER PTHR11632:SF59 247 488 1.9E-41 T 19-04-2016 AMED_2521 6a36bef26979094b49f755bec45236ea 533 PANTHER PTHR11632:SF59 7 205 1.9E-41 T 19-04-2016 AMED_2521 6a36bef26979094b49f755bec45236ea 533 PANTHER PTHR11632 247 488 1.9E-41 T 19-04-2016 AMED_2521 6a36bef26979094b49f755bec45236ea 533 PANTHER PTHR11632 7 205 1.9E-41 T 19-04-2016 AMED_3364 f6f081f01f6bd5932619933108797ee8 415 PANTHER PTHR33744 268 412 1.2E-21 T 19-04-2016 AMED_3364 f6f081f01f6bd5932619933108797ee8 415 Pfam PF13556 PucR C-terminal helix-turn-helix domain 344 401 4.4E-18 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_1549 515afc345fc6c10c94144574138cbd40 257 Gene3D G3DSA:3.90.850.10 3 252 4.1E-57 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1549 515afc345fc6c10c94144574138cbd40 257 PANTHER PTHR30143 2 257 3.3E-58 T 19-04-2016 AMED_1549 515afc345fc6c10c94144574138cbd40 257 SUPERFAMILY SSF56529 3 252 5.36E-54 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1549 515afc345fc6c10c94144574138cbd40 257 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 173 251 1.1E-5 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_6668 aa1e87884f8a40ae11cdac5194a4b1b1 154 Pfam PF00545 ribonuclease 69 148 4.9E-28 T 19-04-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 AMED_6668 aa1e87884f8a40ae11cdac5194a4b1b1 154 SUPERFAMILY SSF53933 60 152 9.92E-32 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_6668 aa1e87884f8a40ae11cdac5194a4b1b1 154 Gene3D G3DSA:3.10.450.30 62 151 9.1E-36 T 19-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 AMED_4726 d2129ed06199dc340ab8360ed6373fe6 466 Pfam PF11700 Vacuole effluxer Atg22 like 174 458 9.6E-58 T 19-04-2016 IPR024671 Autophagy-related protein 22-like AMED_4726 d2129ed06199dc340ab8360ed6373fe6 466 Pfam PF11700 Vacuole effluxer Atg22 like 9 166 5.0E-30 T 19-04-2016 IPR024671 Autophagy-related protein 22-like AMED_4726 d2129ed06199dc340ab8360ed6373fe6 466 SUPERFAMILY SSF103473 84 453 1.15E-33 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4726 d2129ed06199dc340ab8360ed6373fe6 466 Gene3D G3DSA:1.20.1250.20 273 451 2.4E-15 T 19-04-2016 AMED_4726 d2129ed06199dc340ab8360ed6373fe6 466 Gene3D G3DSA:1.20.1250.20 87 231 1.7E-10 T 19-04-2016 AMED_4726 d2129ed06199dc340ab8360ed6373fe6 466 PANTHER PTHR23519 86 464 3.9E-70 T 19-04-2016 AMED_6464 72fb1e7305f2421a3d90f97ca8e64cb1 349 Gene3D G3DSA:3.60.15.10 59 273 6.6E-31 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6464 72fb1e7305f2421a3d90f97ca8e64cb1 349 SUPERFAMILY SSF56281 18 278 5.88E-31 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6464 72fb1e7305f2421a3d90f97ca8e64cb1 349 Pfam PF00753 Metallo-beta-lactamase superfamily 78 220 1.4E-7 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6464 72fb1e7305f2421a3d90f97ca8e64cb1 349 SMART SM00849 75 248 1.3E-11 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_7151 85e7a93162c57b51bab767acbe70a349 349 SUPERFAMILY SSF51679 23 339 6.93E-68 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7151 85e7a93162c57b51bab767acbe70a349 349 PANTHER PTHR30137:SF8 2 349 6.5E-96 T 19-04-2016 AMED_7151 85e7a93162c57b51bab767acbe70a349 349 Gene3D G3DSA:3.20.20.30 3 343 4.5E-78 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7151 85e7a93162c57b51bab767acbe70a349 349 PANTHER PTHR30137 2 349 6.5E-96 T 19-04-2016 AMED_7151 85e7a93162c57b51bab767acbe70a349 349 Pfam PF00296 Luciferase-like monooxygenase 22 307 8.9E-43 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 Pfam PF01799 [2Fe-2S] binding domain 72 140 6.0E-28 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 Gene3D G3DSA:3.10.20.30 3 73 5.3E-28 T 19-04-2016 IPR012675 Beta-grasp domain AMED_3041 b875d96e4badea56d7fd13998c262b82 150 PANTHER PTHR11908 2 130 3.7E-34 T 19-04-2016 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 SUPERFAMILY SSF54292 2 87 6.55E-26 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 62 2.1E-9 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 Gene3D G3DSA:1.10.150.120 74 145 3.5E-29 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_3041 b875d96e4badea56d7fd13998c262b82 150 SUPERFAMILY SSF47741 83 145 1.03E-27 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_6488 0a53ab418386885559107a3d55f87cbd 143 Gene3D G3DSA:1.10.10.10 79 123 1.3E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6488 0a53ab418386885559107a3d55f87cbd 143 Pfam PF09339 IclR helix-turn-helix domain 80 123 1.1E-10 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6488 0a53ab418386885559107a3d55f87cbd 143 SUPERFAMILY SSF46785 78 129 9.67E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1161 a93f9c2d05d2b02310922784feb2f5eb 88 Pfam PF10708 Protein of unknown function (DUF2510) 60 87 1.3E-7 T 19-04-2016 IPR018929 Domain of unknown function DUF2510 AMED_1729 c372299d10739d866270633b27baecf0 206 Hamap MF_02114 2-phospho-L-lactate guanylyltransferase [cofC]. 3 205 21.201 T 19-04-2016 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198|UniPathway: UPA00071 AMED_1729 c372299d10739d866270633b27baecf0 206 Pfam PF01983 Guanylyl transferase CofC like 5 201 5.6E-8 T 19-04-2016 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198|UniPathway: UPA00071 AMED_1729 c372299d10739d866270633b27baecf0 206 PANTHER PTHR40392:SF1 2 202 8.4E-28 T 19-04-2016 AMED_1729 c372299d10739d866270633b27baecf0 206 SUPERFAMILY SSF53448 14 202 1.44E-26 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1729 c372299d10739d866270633b27baecf0 206 TIGRFAM TIGR03552 F420_cofC: 2-phospho-L-lactate guanylyltransferase 5 198 3.5E-42 T 19-04-2016 IPR002835 2-phospho-L-lactate guanylyltransferase, CofC GO:0016779 KEGG: 00680+2.7.7.68|MetaCyc: PWY-5198|UniPathway: UPA00071 AMED_1729 c372299d10739d866270633b27baecf0 206 PANTHER PTHR40392 2 202 8.4E-28 T 19-04-2016 AMED_1729 c372299d10739d866270633b27baecf0 206 Gene3D G3DSA:3.90.550.10 5 164 3.9E-20 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 23 316 6.0E-138 T 19-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PANTHER PTHR23293 258 316 1.6E-73 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PANTHER PTHR23293 192 225 1.6E-73 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 SUPERFAMILY SSF52402 18 224 4.42E-68 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PANTHER PTHR23293:SF6 258 316 1.6E-73 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PANTHER PTHR23293:SF6 192 225 1.6E-73 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PIRSF PIRSF002936 14 316 2.8E-138 T 19-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PANTHER PTHR23293:SF6 15 172 1.6E-73 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 Gene3D G3DSA:3.40.50.620 257 264 1.8E-53 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 Gene3D G3DSA:3.40.50.620 16 224 1.8E-53 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 PANTHER PTHR23293 15 172 1.6E-73 T 19-04-2016 AMED_2846 105cb0f43c4e270c6f344753ee52dbc6 316 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 44 269 5.5E-49 T 19-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 AMED_2868 32a868a845e0f470641cdc8321766066 244 Gene3D G3DSA:3.40.50.10490 10 237 3.7E-49 T 19-04-2016 AMED_2868 32a868a845e0f470641cdc8321766066 244 SUPERFAMILY SSF53697 13 198 6.07E-18 T 19-04-2016 AMED_2868 32a868a845e0f470641cdc8321766066 244 Pfam PF13580 SIS domain 12 143 7.0E-35 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_3483 91bc4a2de82b64420bb7cd27146b43d7 219 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 180 4.0E-43 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_3483 91bc4a2de82b64420bb7cd27146b43d7 219 SMART SM01007 8 181 6.4E-51 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_3483 91bc4a2de82b64420bb7cd27146b43d7 219 SUPERFAMILY SSF53639 3 202 2.16E-56 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_3483 91bc4a2de82b64420bb7cd27146b43d7 219 Gene3D G3DSA:3.40.225.10 4 194 5.4E-60 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_3483 91bc4a2de82b64420bb7cd27146b43d7 219 PANTHER PTHR22789 2 217 9.1E-63 T 19-04-2016 AMED_3483 91bc4a2de82b64420bb7cd27146b43d7 219 PANTHER PTHR22789:SF0 2 217 9.1E-63 T 19-04-2016 AMED_2634 39bcbf47ce051150ea176b9869447ff1 533 SUPERFAMILY SSF75304 2 403 2.49E-104 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_2634 39bcbf47ce051150ea176b9869447ff1 533 PANTHER PTHR11895:SF24 1 416 1.8E-132 T 19-04-2016 AMED_2634 39bcbf47ce051150ea176b9869447ff1 533 PANTHER PTHR11895 1 416 1.8E-132 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_2634 39bcbf47ce051150ea176b9869447ff1 533 Gene3D G3DSA:3.90.1300.10 2 402 6.8E-102 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_2634 39bcbf47ce051150ea176b9869447ff1 533 Pfam PF01425 Amidase 7 395 9.9E-76 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_3151 1cd5795dad90c426d3853b2d0e13ac22 299 Pfam PF01040 UbiA prenyltransferase family 32 268 2.0E-27 T 19-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 AMED_3151 1cd5795dad90c426d3853b2d0e13ac22 299 PANTHER PTHR11048 20 231 5.0E-13 T 19-04-2016 AMED_0422 2667ac51ecfcf9021b86d4e45db8dc8c 122 SUPERFAMILY SSF54593 6 121 1.38E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0422 2667ac51ecfcf9021b86d4e45db8dc8c 122 PANTHER PTHR35908 3 122 1.2E-46 T 19-04-2016 AMED_0422 2667ac51ecfcf9021b86d4e45db8dc8c 122 Gene3D G3DSA:3.10.180.10 6 120 2.0E-15 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0422 2667ac51ecfcf9021b86d4e45db8dc8c 122 PANTHER PTHR35908:SF2 3 122 1.2E-46 T 19-04-2016 AMED_3475 3e58a390522e0a9dbb3d68286396f87c 170 Gene3D G3DSA:2.70.50.50 30 169 6.4E-32 T 19-04-2016 AMED_3475 3e58a390522e0a9dbb3d68286396f87c 170 PANTHER PTHR34823 1 170 7.5E-57 T 19-04-2016 AMED_3475 3e58a390522e0a9dbb3d68286396f87c 170 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 30 167 8.1E-19 T 19-04-2016 IPR004302 Chitin-binding protein, N-terminal AMED_3475 3e58a390522e0a9dbb3d68286396f87c 170 PANTHER PTHR34823:SF1 1 170 7.5E-57 T 19-04-2016 AMED_3475 3e58a390522e0a9dbb3d68286396f87c 170 SUPERFAMILY SSF81296 30 169 5.74E-35 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_1089 5f1466cb7aa976dbea00688670b130b0 380 SUPERFAMILY SSF55874 293 375 3.19E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1089 5f1466cb7aa976dbea00688670b130b0 380 Gene3D G3DSA:3.30.565.10 295 376 2.5E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1089 5f1466cb7aa976dbea00688670b130b0 380 PANTHER PTHR24421 66 379 6.2E-41 T 19-04-2016 AMED_1089 5f1466cb7aa976dbea00688670b130b0 380 Pfam PF07730 Histidine kinase 183 247 2.7E-16 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 SUPERFAMILY SSF46785 3 94 5.46E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 SMART SM00418 3 81 8.0E-28 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 PANTHER PTHR33154 1 93 8.1E-26 T 19-04-2016 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 Pfam PF01022 Bacterial regulatory protein, arsR family 11 55 8.9E-19 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 6.1E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 6.1E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 24 35 6.1E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 6.1E-12 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 PANTHER PTHR33154:SF6 1 93 8.1E-26 T 19-04-2016 AMED_2466 74920cdaaee10cd70f3a3a5bfd33a26f 103 Gene3D G3DSA:1.10.10.10 3 100 3.2E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 Pfam PF01614 Bacterial transcriptional regulator 133 253 5.3E-18 T 19-04-2016 IPR014757 Transcription regulator IclR, C-terminal AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 Gene3D G3DSA:3.30.450.40 90 263 1.2E-40 T 19-04-2016 IPR029016 GAF domain-like AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 Gene3D G3DSA:1.10.10.10 10 83 1.4E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 PANTHER PTHR30136 15 268 2.6E-41 T 19-04-2016 AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 SUPERFAMILY SSF55781 74 258 4.05E-38 T 19-04-2016 IPR029016 GAF domain-like AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 Pfam PF09339 IclR helix-turn-helix domain 16 69 4.8E-7 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 SUPERFAMILY SSF46785 15 85 3.01E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6211 d9f0f8fac796f819d96acd9b821c2bb0 271 SMART SM00346 12 105 3.8E-5 T 19-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMED_3734 eaa9e7289024e67bd53e19485993481b 285 PANTHER PTHR34135:SF2 69 269 6.9E-48 T 19-04-2016 AMED_3734 eaa9e7289024e67bd53e19485993481b 285 SMART SM00641 69 175 1.0E-31 T 19-04-2016 IPR018077 Glycoside hydrolase, family 25 subgroup AMED_3734 eaa9e7289024e67bd53e19485993481b 285 Pfam PF01183 Glycosyl hydrolases family 25 73 264 5.3E-43 T 19-04-2016 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMED_3734 eaa9e7289024e67bd53e19485993481b 285 PANTHER PTHR34135 69 269 6.9E-48 T 19-04-2016 AMED_3734 eaa9e7289024e67bd53e19485993481b 285 Gene3D G3DSA:3.20.20.80 70 281 2.1E-63 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3734 eaa9e7289024e67bd53e19485993481b 285 SUPERFAMILY SSF51445 69 281 2.46E-54 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1890 9960999f338b9083732ef751afe3cf94 328 Gene3D G3DSA:3.30.360.10 125 323 5.3E-51 T 19-04-2016 AMED_1890 9960999f338b9083732ef751afe3cf94 328 Gene3D G3DSA:3.40.50.720 2 124 3.4E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1890 9960999f338b9083732ef751afe3cf94 328 PANTHER PTHR22604 1 328 8.3E-91 T 19-04-2016 AMED_1890 9960999f338b9083732ef751afe3cf94 328 SUPERFAMILY SSF55347 121 248 2.13E-24 T 19-04-2016 AMED_1890 9960999f338b9083732ef751afe3cf94 328 PANTHER PTHR22604:SF92 1 328 8.3E-91 T 19-04-2016 AMED_1890 9960999f338b9083732ef751afe3cf94 328 SUPERFAMILY SSF51735 2 142 2.72E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1890 9960999f338b9083732ef751afe3cf94 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 112 1.5E-13 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_1890 9960999f338b9083732ef751afe3cf94 328 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 227 1.7E-6 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 Pfam PF01494 FAD binding domain 2 337 5.1E-72 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 SUPERFAMILY SSF51905 3 171 1.55E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 SUPERFAMILY SSF51905 261 350 1.55E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 PANTHER PTHR13789 2 382 1.8E-163 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 Gene3D G3DSA:3.30.9.10 138 295 7.3E-61 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 Gene3D G3DSA:3.50.50.60 2 109 2.4E-8 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 2.2E-26 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 274 289 2.2E-26 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 305 2.2E-26 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 2.2E-26 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 PANTHER PTHR13789:SF192 2 382 1.8E-163 T 19-04-2016 AMED_7579 fc297a83bf716d48b7341623f5ac5ba0 383 SUPERFAMILY SSF54373 172 271 9.42E-37 T 19-04-2016 AMED_3626 e26df1663052b24f2191377f36da9cb4 196 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 86 132 1.2E-4 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3626 e26df1663052b24f2191377f36da9cb4 196 SUPERFAMILY SSF47203 86 176 1.59E-7 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3626 e26df1663052b24f2191377f36da9cb4 196 Gene3D G3DSA:1.20.140.10 85 130 1.0E-4 T 19-04-2016 AMED_9187 3c236a8e88e0dc779e445484c3b2c60c 128 Pfam PF04075 Domain of unknown function (DUF385) 20 110 1.3E-6 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_9187 3c236a8e88e0dc779e445484c3b2c60c 128 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 24 106 1.9E-17 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 Pfam PF00501 AMP-binding enzyme 31 425 1.9E-62 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 PANTHER PTHR24096 21 314 2.4E-89 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 PANTHER PTHR24096 330 426 2.4E-89 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 Gene3D G3DSA:3.40.50.980 26 196 5.2E-34 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 SUPERFAMILY SSF56801 24 294 6.93E-78 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 SUPERFAMILY SSF56801 344 425 6.93E-78 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 Gene3D G3DSA:3.40.50.980 197 289 4.4E-28 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 Gene3D G3DSA:3.40.50.980 341 396 4.4E-28 T 19-04-2016 AMED_7236 ed22c91fa409afbea01e295ca6ca34ff 426 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Gene3D G3DSA:3.40.50.720 160 273 1.1E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 SUPERFAMILY SSF51735 130 305 1.87E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Gene3D G3DSA:3.90.180.10 13 159 5.2E-36 T 19-04-2016 IPR011032 GroES-like AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 PANTHER PTHR11695:SF419 11 326 1.1E-100 T 19-04-2016 AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 SUPERFAMILY SSF50129 8 156 4.26E-36 T 19-04-2016 IPR011032 GroES-like AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Pfam PF00107 Zinc-binding dehydrogenase 162 290 2.5E-25 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 PANTHER PTHR11695 11 326 1.1E-100 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 120 3.5E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3033 eb6c47bf39a3cded2aabcfc2119a7c4e 329 SMART SM00829 9 326 2.5E-12 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_8769 b0173abca4dab66187dd0d9c34f74523 162 SUPERFAMILY SSF55811 15 138 1.62E-18 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8769 b0173abca4dab66187dd0d9c34f74523 162 ProSitePatterns PS00893 Nudix box signature. 47 68 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_8769 b0173abca4dab66187dd0d9c34f74523 162 Gene3D G3DSA:3.90.79.10 14 139 2.3E-17 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8769 b0173abca4dab66187dd0d9c34f74523 162 Pfam PF00293 NUDIX domain 16 129 3.7E-14 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 Pfam PF01750 Hydrogenase maturation protease 22 146 1.4E-15 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 SUPERFAMILY SSF53163 4 149 4.45E-37 T 19-04-2016 IPR023430 Peptidase HybD-like domain AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 36 53 4.1E-15 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 17 28 4.1E-15 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 69 85 4.1E-15 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 58 68 4.1E-15 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 PRINTS PR00446 Hydrogen uptake protein signature 5 17 4.1E-15 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 PANTHER PTHR30302 1 148 1.5E-32 T 19-04-2016 AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 Gene3D G3DSA:3.40.50.1450 4 151 1.6E-44 T 19-04-2016 IPR023430 Peptidase HybD-like domain AMED_3790 71b8097db15e796ce52af4d2b2941e38 161 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 6 147 3.3E-36 T 19-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AMED_1895 ba858073a04fd779d6aad98dab278df1 196 Pfam PF02669 K+-transporting ATPase, c chain 9 188 4.6E-53 T 19-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMED_1895 ba858073a04fd779d6aad98dab278df1 196 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 5 191 27.336 T 19-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMED_1895 ba858073a04fd779d6aad98dab278df1 196 PANTHER PTHR30042 2 194 9.7E-48 T 19-04-2016 AMED_1895 ba858073a04fd779d6aad98dab278df1 196 PIRSF PIRSF001296 4 194 8.3E-49 T 19-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMED_1895 ba858073a04fd779d6aad98dab278df1 196 PANTHER PTHR30042:SF2 2 194 9.7E-48 T 19-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMED_3940 64774435a3112af3c147b72f463f1239 601 PANTHER PTHR24221 114 601 1.8E-99 T 19-04-2016 AMED_3940 64774435a3112af3c147b72f463f1239 601 Gene3D G3DSA:3.40.50.300 345 586 3.4E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3940 64774435a3112af3c147b72f463f1239 601 SUPERFAMILY SSF52540 336 592 2.5E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3940 64774435a3112af3c147b72f463f1239 601 PANTHER PTHR24221:SF157 114 601 1.8E-99 T 19-04-2016 AMED_3940 64774435a3112af3c147b72f463f1239 601 Gene3D G3DSA:1.20.1560.10 23 310 9.0E-11 T 19-04-2016 AMED_3940 64774435a3112af3c147b72f463f1239 601 Pfam PF00005 ABC transporter 362 521 3.6E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3940 64774435a3112af3c147b72f463f1239 601 SMART SM00382 371 568 2.0E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3940 64774435a3112af3c147b72f463f1239 601 SUPERFAMILY SSF90123 14 311 3.79E-18 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_3940 64774435a3112af3c147b72f463f1239 601 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1224 3291a6de41b94d8b1f9e5478d00857fa 248 Gene3D G3DSA:3.40.50.880 3 203 1.6E-49 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_1224 3291a6de41b94d8b1f9e5478d00857fa 248 Pfam PF00117 Glutamine amidotransferase class-I 23 183 1.2E-15 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMED_1224 3291a6de41b94d8b1f9e5478d00857fa 248 PANTHER PTHR11922 1 199 3.9E-39 T 19-04-2016 AMED_1224 3291a6de41b94d8b1f9e5478d00857fa 248 SUPERFAMILY SSF52317 27 189 2.37E-38 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_1224 3291a6de41b94d8b1f9e5478d00857fa 248 PANTHER PTHR11922:SF11 1 199 3.9E-39 T 19-04-2016 AMED_6783 bf4f6e5ffec25e01dd793b6ac830ba7d 141 SUPERFAMILY SSF46955 5 51 2.15E-8 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_6783 bf4f6e5ffec25e01dd793b6ac830ba7d 141 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 50 1.8E-11 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_6783 bf4f6e5ffec25e01dd793b6ac830ba7d 141 Gene3D G3DSA:1.10.1660.10 3 41 1.6E-4 T 19-04-2016 AMED_6783 bf4f6e5ffec25e01dd793b6ac830ba7d 141 Pfam PF12728 Helix-turn-helix domain 5 50 3.0E-13 T 19-04-2016 AMED_6424 80080fc2366e822725d1f585ea57a742 1019 Gene3D G3DSA:3.40.50.300 276 469 9.8E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6424 80080fc2366e822725d1f585ea57a742 1019 Pfam PF13191 AAA ATPase domain 278 454 4.1E-9 T 19-04-2016 AMED_6424 80080fc2366e822725d1f585ea57a742 1019 SUPERFAMILY SSF52540 274 541 3.69E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 Pfam PF04444 Catechol dioxygenase N terminus 22 96 1.6E-28 T 19-04-2016 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 Gene3D G3DSA:2.60.130.10 2 285 2.6E-85 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 PANTHER PTHR33711:SF4 1 285 4.5E-96 T 19-04-2016 AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 129 157 - T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 Pfam PF00775 Dioxygenase 101 284 2.6E-43 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 SUPERFAMILY SSF49482 1 285 1.24E-81 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_4854 63fc7b20d7402a10ebe9c518dd4257f9 286 PANTHER PTHR33711 1 285 4.5E-96 T 19-04-2016 AMED_1125 e19319e0cda97e2ed87390e29977db8b 113 Pfam PF13806 Rieske-like [2Fe-2S] domain 8 111 3.4E-36 T 19-04-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMED_1125 e19319e0cda97e2ed87390e29977db8b 113 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 8 111 1.4E-38 T 19-04-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMED_1125 e19319e0cda97e2ed87390e29977db8b 113 SUPERFAMILY SSF50022 8 112 6.75E-35 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_1125 e19319e0cda97e2ed87390e29977db8b 113 PANTHER PTHR40562 1 111 1.8E-30 T 19-04-2016 AMED_1125 e19319e0cda97e2ed87390e29977db8b 113 Gene3D G3DSA:2.102.10.10 8 112 2.8E-39 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_8267 ae4adefa9fdd7f15f43f1d18ef8c4694 227 Gene3D G3DSA:2.40.33.20 1 224 5.4E-65 T 19-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like AMED_8267 ae4adefa9fdd7f15f43f1d18ef8c4694 227 SUPERFAMILY SSF50800 6 220 1.94E-54 T 19-04-2016 IPR011037 Pyruvate kinase-like, insert domain AMED_8267 ae4adefa9fdd7f15f43f1d18ef8c4694 227 PANTHER PTHR30212:SF2 18 172 7.8E-53 T 19-04-2016 AMED_8267 ae4adefa9fdd7f15f43f1d18ef8c4694 227 PANTHER PTHR30212 18 172 7.8E-53 T 19-04-2016 AMED_8267 ae4adefa9fdd7f15f43f1d18ef8c4694 227 Pfam PF03473 MOSC domain 51 154 2.1E-20 T 19-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 353 390 3.5E-9 T 19-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 SUPERFAMILY SSF56281 1 416 2.41E-94 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 Gene3D G3DSA:3.60.15.10 2 247 1.9E-72 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 2 541 5.2E-146 T 19-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 PANTHER PTHR11203 1 544 3.6E-198 T 19-04-2016 AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 356 384 - T 19-04-2016 IPR001587 Ribonuclease J, conserved site AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 Hamap MF_01491 Ribonuclease J [rnj]. 1 544 39.564 T 19-04-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 Pfam PF00753 Metallo-beta-lactamase superfamily 10 167 7.8E-15 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 PANTHER PTHR11203:SF22 1 544 3.6E-198 T 19-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 SMART SM00849 13 207 2.9E-22 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_6299 04dc94522a5bcd9c40e3efd98f2cdefd 544 PIRSF PIRSF004803 1 544 2.4E-194 T 19-04-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 Gene3D G3DSA:3.20.20.70 2 148 1.1E-32 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 SUPERFAMILY SSF54631 1 131 4.04E-32 T 19-04-2016 AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 Pfam PF00571 CBS domain 3 55 6.5E-16 T 19-04-2016 IPR000644 CBS domain AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 Pfam PF00571 CBS domain 78 132 2.5E-10 T 19-04-2016 IPR000644 CBS domain AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 SMART SM00116 85 132 1.3E-8 T 19-04-2016 IPR000644 CBS domain AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 SMART SM00116 10 58 1.5E-12 T 19-04-2016 IPR000644 CBS domain AMED_5479 b03f4ab27d096ee980f02be9ba53dbcf 203 PANTHER PTHR11911 1 143 1.1E-30 T 19-04-2016 AMED_0544 8cbe6a0fdec70e65edb2365284be81ab 281 Gene3D G3DSA:3.75.10.10 12 278 3.9E-65 T 19-04-2016 AMED_0544 8cbe6a0fdec70e65edb2365284be81ab 281 PANTHER PTHR12737:SF20 13 279 9.8E-102 T 19-04-2016 AMED_0544 8cbe6a0fdec70e65edb2365284be81ab 281 SUPERFAMILY SSF55909 9 280 1.26E-50 T 19-04-2016 AMED_0544 8cbe6a0fdec70e65edb2365284be81ab 281 PANTHER PTHR12737 13 279 9.8E-102 T 19-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 AMED_0544 8cbe6a0fdec70e65edb2365284be81ab 281 Pfam PF02274 Amidinotransferase 39 279 4.1E-14 T 19-04-2016 AMED_0090 65135d04cf99c037e4f180af08e71220 461 Gene3D G3DSA:1.25.40.10 220 454 1.1E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0090 65135d04cf99c037e4f180af08e71220 461 SUPERFAMILY SSF47413 39 91 1.21E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0090 65135d04cf99c037e4f180af08e71220 461 SUPERFAMILY SSF48452 217 326 6.45E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0090 65135d04cf99c037e4f180af08e71220 461 SMART SM00530 38 93 8.3E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0090 65135d04cf99c037e4f180af08e71220 461 Gene3D G3DSA:1.10.260.40 41 89 5.4E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0090 65135d04cf99c037e4f180af08e71220 461 Pfam PF13560 Helix-turn-helix domain 42 90 3.0E-7 T 19-04-2016 AMED_0090 65135d04cf99c037e4f180af08e71220 461 Pfam PF13424 Tetratricopeptide repeat 229 282 1.6E-7 T 19-04-2016 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 SUPERFAMILY SSF55031 185 303 3.59E-28 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 374 4.7E-90 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 SUPERFAMILY SSF53187 3 201 1.62E-72 T 19-04-2016 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 SUPERFAMILY SSF53187 302 386 1.62E-72 T 19-04-2016 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 Gene3D G3DSA:3.40.630.10 302 387 7.3E-88 T 19-04-2016 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 Gene3D G3DSA:3.40.630.10 3 182 7.3E-88 T 19-04-2016 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 PIRSF PIRSF005962 1 390 2.0E-106 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 Pfam PF07687 Peptidase dimerisation domain 189 269 2.2E-10 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 PANTHER PTHR11014 1 392 3.5E-122 T 19-04-2016 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 Pfam PF01546 Peptidase family M20/M25/M40 72 385 4.7E-37 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 Gene3D G3DSA:3.30.70.360 185 301 1.8E-36 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_5343 fa8784bd7a98ac70dd6ee668bc083fa9 393 PANTHER PTHR11014:SF63 1 392 3.5E-122 T 19-04-2016 AMED_2052 c210b6f5866518ec95348878d456780f 405 SUPERFAMILY SSF103473 28 401 2.09E-33 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2052 c210b6f5866518ec95348878d456780f 405 Gene3D G3DSA:1.20.1250.20 222 400 6.4E-14 T 19-04-2016 AMED_2052 c210b6f5866518ec95348878d456780f 405 PANTHER PTHR23523:SF2 9 405 1.3E-124 T 19-04-2016 AMED_2052 c210b6f5866518ec95348878d456780f 405 PANTHER PTHR23523 9 405 1.3E-124 T 19-04-2016 AMED_2052 c210b6f5866518ec95348878d456780f 405 Gene3D G3DSA:1.20.1250.20 41 206 7.2E-11 T 19-04-2016 AMED_2052 c210b6f5866518ec95348878d456780f 405 Pfam PF07690 Major Facilitator Superfamily 43 251 1.6E-8 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4580 167d46d8674348027458d048e89e8542 276 PANTHER PTHR12110:SF3 18 268 2.3E-58 T 19-04-2016 AMED_4580 167d46d8674348027458d048e89e8542 276 SUPERFAMILY SSF51658 18 270 1.93E-57 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4580 167d46d8674348027458d048e89e8542 276 Pfam PF01261 Xylose isomerase-like TIM barrel 34 232 5.8E-26 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4580 167d46d8674348027458d048e89e8542 276 PANTHER PTHR12110 18 268 2.3E-58 T 19-04-2016 AMED_4580 167d46d8674348027458d048e89e8542 276 Gene3D G3DSA:3.20.20.150 17 271 1.1E-66 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_4580 167d46d8674348027458d048e89e8542 276 PIRSF PIRSF006241 12 275 1.9E-64 T 19-04-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 SUPERFAMILY SSF52540 1 188 1.85E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 SUPERFAMILY SSF52540 424 563 1.85E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:3.30.1490.20 184 223 3.8E-24 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:3.30.1490.20 114 137 3.8E-24 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:1.10.8.280 275 395 1.6E-42 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:1.20.1580.10 687 813 2.2E-55 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 933 22.188 T 19-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 PANTHER PTHR32282 1 933 0.0 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 1 918 0.0 T 19-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Pfam PF00005 ABC transporter 618 853 8.7E-9 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 ProSitePatterns PS00211 ABC transporters family signature. 823 837 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 PANTHER PTHR32282:SF2 1 933 0.0 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:3.40.50.300 1 73 7.1E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:3.40.50.300 605 666 7.9E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:3.40.50.300 814 931 7.9E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:3.40.50.300 472 591 7.1E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:1.20.1580.10 396 471 1.5E-51 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:1.20.1580.10 75 113 1.5E-51 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 Gene3D G3DSA:1.20.1580.10 238 272 1.5E-51 T 19-04-2016 AMED_6082 1274cbbd9149b0afb14346e8502ee0f1 937 SUPERFAMILY SSF52540 608 904 6.56E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4080 4401ddfc4dd27f774313b7a496bc2b21 210 Pfam PF01066 CDP-alcohol phosphatidyltransferase 26 90 1.5E-7 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_7513 414c797d36e3c291fc3b0358f33e9360 377 Gene3D G3DSA:3.20.20.140 73 335 2.0E-44 T 19-04-2016 AMED_7513 414c797d36e3c291fc3b0358f33e9360 377 PANTHER PTHR11271 65 377 3.6E-32 T 19-04-2016 AMED_7513 414c797d36e3c291fc3b0358f33e9360 377 Gene3D G3DSA:2.30.40.10 336 376 8.2E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_7513 414c797d36e3c291fc3b0358f33e9360 377 PANTHER PTHR11271:SF42 65 377 3.6E-32 T 19-04-2016 AMED_7513 414c797d36e3c291fc3b0358f33e9360 377 SUPERFAMILY SSF51556 71 337 7.26E-43 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7513 414c797d36e3c291fc3b0358f33e9360 377 Pfam PF01979 Amidohydrolase family 183 370 2.6E-12 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_7559 ee034da8a1bd715b61b6cceb92f0fe3b 522 PANTHER PTHR11785 1 499 1.0E-66 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_7559 ee034da8a1bd715b61b6cceb92f0fe3b 522 PIRSF PIRSF006060 11 519 5.4E-64 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_7559 ee034da8a1bd715b61b6cceb92f0fe3b 522 Pfam PF13520 Amino acid permease 34 485 1.7E-43 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 Gene3D G3DSA:2.80.10.50 814 948 1.4E-28 T 19-04-2016 AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 849 934 1.0E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 Gene3D G3DSA:2.70.98.50 43 415 2.3E-132 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 SUPERFAMILY SSF50370 811 947 1.16E-36 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 SMART SM00458 811 947 1.3E-8 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 PANTHER PTHR31084 8 802 1.6E-299 T 19-04-2016 AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 PANTHER PTHR31084:SF4 8 802 1.6E-299 T 19-04-2016 AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 Pfam PF14498 Glycosyl hydrolase family 65, N-terminal domain 43 279 7.9E-70 T 19-04-2016 IPR027414 Glycosyl hydrolase family, N-terminal domain KEGG: 00511+3.2.1.51 AMED_3984 bb0d718659515ff69cc75a29bc5dda33 949 SUPERFAMILY SSF48208 287 749 1.59E-84 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_0411 65cadad40749b3a4ab5aaf09066226cf 185 Gene3D G3DSA:3.40.430.10 4 181 2.2E-24 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_0411 65cadad40749b3a4ab5aaf09066226cf 185 SUPERFAMILY SSF53597 4 159 1.7E-20 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_0411 65cadad40749b3a4ab5aaf09066226cf 185 PANTHER PTHR38011 2 184 2.8E-22 T 19-04-2016 AMED_0411 65cadad40749b3a4ab5aaf09066226cf 185 Pfam PF01872 RibD C-terminal domain 3 173 1.8E-17 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_0411 65cadad40749b3a4ab5aaf09066226cf 185 PANTHER PTHR38011:SF1 2 184 2.8E-22 T 19-04-2016 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49785 45 222 1.12E-29 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49303 237 346 6.62E-19 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF51445 343 696 6.93E-57 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 PANTHER PTHR10066:SF66 45 803 7.6E-109 T 19-04-2016 IPR028829 Exo-beta-D-glucosaminidase GO:0000272|GO:0005576|GO:0052761 KEGG: 00520+3.2.1.165 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:2.60.40.320 250 345 7.3E-11 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 Pfam PF00703 Glycosyl hydrolases family 2 239 346 4.1E-12 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 PANTHER PTHR10066 45 803 7.6E-109 T 19-04-2016 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49303 787 931 6.55E-21 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:2.60.120.260 45 212 2.5E-18 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:3.20.20.80 627 700 3.5E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 Gene3D G3DSA:3.20.20.80 346 578 3.5E-26 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3420 e7999a766ce7f3c6cf472ecde88df4bc 939 SUPERFAMILY SSF49303 698 803 5.18E-19 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_6085 26d3d2e381723999b832b11e3bfc34db 657 Gene3D G3DSA:3.40.50.300 210 346 6.5E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6085 26d3d2e381723999b832b11e3bfc34db 657 Gene3D G3DSA:3.40.50.300 378 464 6.5E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6085 26d3d2e381723999b832b11e3bfc34db 657 Gene3D G3DSA:3.40.50.300 475 642 2.8E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6085 26d3d2e381723999b832b11e3bfc34db 657 Pfam PF00580 UvrD/REP helicase N-terminal domain 371 465 4.3E-12 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMED_6085 26d3d2e381723999b832b11e3bfc34db 657 SUPERFAMILY SSF52540 202 642 3.33E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6085 26d3d2e381723999b832b11e3bfc34db 657 PANTHER PTHR11070 182 642 3.2E-27 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 Pfam PF00703 Glycosyl hydrolases family 2 202 297 1.2E-7 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 SUPERFAMILY SSF49303 192 297 3.74E-18 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 SUPERFAMILY SSF49785 3 189 2.13E-49 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3745 e518de00b263aabd5366d07207ba34d9 814 PANTHER PTHR10066 2 137 1.2E-209 T 19-04-2016 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 PANTHER PTHR10066 155 716 1.2E-209 T 19-04-2016 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:2.60.120.260 3 187 1.4E-24 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3745 e518de00b263aabd5366d07207ba34d9 814 PANTHER PTHR10066:SF12 2 137 1.2E-209 T 19-04-2016 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 PANTHER PTHR10066:SF12 155 716 1.2E-209 T 19-04-2016 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:3.20.20.80 296 532 1.8E-63 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:3.20.20.80 570 637 1.8E-63 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 Gene3D G3DSA:2.60.40.320 192 295 8.6E-18 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_3745 e518de00b263aabd5366d07207ba34d9 814 SUPERFAMILY SSF51445 294 637 2.94E-106 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 Pfam PF03466 LysR substrate binding domain 91 293 7.4E-25 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.5E-24 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 SUPERFAMILY SSF46785 2 86 1.01E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 SUPERFAMILY SSF53850 88 294 2.48E-26 T 19-04-2016 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 Gene3D G3DSA:1.10.10.10 2 84 6.8E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-10 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 Gene3D G3DSA:3.40.190.10 103 173 3.9E-15 T 19-04-2016 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 Gene3D G3DSA:3.40.190.10 174 265 7.1E-18 T 19-04-2016 AMED_6723 e866dd8fc04b728f7971ecbf602907bb 295 PANTHER PTHR30346 1 294 4.0E-68 T 19-04-2016 AMED_0238 df514eed1cf37dca405986f8f8ebc567 303 Pfam PF00535 Glycosyl transferase family 2 17 135 5.1E-13 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_0238 df514eed1cf37dca405986f8f8ebc567 303 SUPERFAMILY SSF53448 17 272 1.0E-30 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0238 df514eed1cf37dca405986f8f8ebc567 303 PANTHER PTHR22916:SF29 17 219 4.1E-16 T 19-04-2016 AMED_0238 df514eed1cf37dca405986f8f8ebc567 303 PANTHER PTHR22916 17 219 4.1E-16 T 19-04-2016 AMED_0238 df514eed1cf37dca405986f8f8ebc567 303 Gene3D G3DSA:3.90.550.10 17 225 8.5E-18 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7962 8a838caafb9ed3e99bd6a142006a3a4c 201 Gene3D G3DSA:2.60.120.10 1 190 2.7E-66 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_7962 8a838caafb9ed3e99bd6a142006a3a4c 201 SUPERFAMILY SSF51182 1 198 1.63E-69 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_7962 8a838caafb9ed3e99bd6a142006a3a4c 201 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 178 1.0E-70 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_7962 8a838caafb9ed3e99bd6a142006a3a4c 201 PANTHER PTHR21047 1 189 8.0E-54 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_7962 8a838caafb9ed3e99bd6a142006a3a4c 201 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 177 5.0E-57 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_3693 38e3d39e27418ae60da81682212f37db 225 SMART SM00421 160 217 2.4E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3693 38e3d39e27418ae60da81682212f37db 225 SUPERFAMILY SSF46894 151 223 3.16E-21 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3693 38e3d39e27418ae60da81682212f37db 225 Gene3D G3DSA:3.40.50.2300 7 131 2.3E-38 T 19-04-2016 AMED_3693 38e3d39e27418ae60da81682212f37db 225 PANTHER PTHR26402:SF564 13 219 3.4E-89 T 19-04-2016 AMED_3693 38e3d39e27418ae60da81682212f37db 225 SUPERFAMILY SSF52172 12 141 2.13E-35 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3693 38e3d39e27418ae60da81682212f37db 225 SMART SM00448 13 126 3.5E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3693 38e3d39e27418ae60da81682212f37db 225 Pfam PF00072 Response regulator receiver domain 15 127 9.4E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_3693 38e3d39e27418ae60da81682212f37db 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 7.9E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3693 38e3d39e27418ae60da81682212f37db 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 7.9E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3693 38e3d39e27418ae60da81682212f37db 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 7.9E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3693 38e3d39e27418ae60da81682212f37db 225 PANTHER PTHR26402 13 219 3.4E-89 T 19-04-2016 AMED_3693 38e3d39e27418ae60da81682212f37db 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 217 1.2E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3693 38e3d39e27418ae60da81682212f37db 225 Gene3D G3DSA:1.10.10.10 132 223 4.7E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3693 38e3d39e27418ae60da81682212f37db 225 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9259 caa5c00376a9c3044b623a2555f1642a 385 Pfam PF07730 Histidine kinase 173 238 3.9E-19 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_9259 caa5c00376a9c3044b623a2555f1642a 385 PANTHER PTHR24421 6 382 1.5E-82 T 19-04-2016 AMED_9259 caa5c00376a9c3044b623a2555f1642a 385 PANTHER PTHR24421:SF26 6 382 1.5E-82 T 19-04-2016 AMED_9259 caa5c00376a9c3044b623a2555f1642a 385 SUPERFAMILY SSF55874 259 381 3.44E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9259 caa5c00376a9c3044b623a2555f1642a 385 Gene3D G3DSA:3.30.565.10 253 382 1.1E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 SUPERFAMILY SSF49482 55 206 4.32E-45 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 SUPERFAMILY SSF51055 229 270 2.35E-14 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 Pfam PF02839 Carbohydrate binding domain 229 269 2.1E-6 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 PANTHER PTHR33711 32 230 6.1E-64 T 19-04-2016 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 SMART SM00495 226 272 4.1E-9 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 Gene3D G3DSA:2.60.130.10 48 206 5.6E-44 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 PANTHER PTHR33711:SF3 32 230 6.1E-64 T 19-04-2016 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 Pfam PF00775 Dioxygenase 62 206 1.4E-18 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_8135 087549e07605f630ca2cfb9d4b3279e0 272 Gene3D G3DSA:2.10.10.20 228 270 6.0E-22 T 19-04-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 AMED_2359 5f2499716f15c0c9ae93123837344526 245 PANTHER PTHR24322 152 184 2.2E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 PANTHER PTHR24322 6 136 2.2E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 SUPERFAMILY SSF51735 3 242 6.03E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2359 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.6E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2359 5f2499716f15c0c9ae93123837344526 245 Gene3D G3DSA:3.40.50.720 2 243 7.7E-71 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2359 5f2499716f15c0c9ae93123837344526 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 8 241 1.5E-50 T 19-04-2016 AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 49 139 1.1E-19 T 19-04-2016 IPR032093 Phospholipase D, N-terminal AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 PANTHER PTHR22953:SF40 227 417 1.3E-111 T 19-04-2016 AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 PANTHER PTHR22953:SF40 22 198 1.3E-111 T 19-04-2016 AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 SUPERFAMILY SSF56300 145 198 2.66E-33 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 SUPERFAMILY SSF56300 227 514 2.66E-33 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 Gene3D G3DSA:3.60.21.10 146 516 4.1E-27 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 PANTHER PTHR22953 227 417 1.3E-111 T 19-04-2016 AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 PANTHER PTHR22953 22 198 1.3E-111 T 19-04-2016 AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 Pfam PF09423 PhoD-like phosphatase 155 499 4.0E-76 T 19-04-2016 IPR018946 Alkaline phosphatase D-related AMED_6715 0c28b1c0b85206f7c97ab25556473371 518 Gene3D G3DSA:2.60.40.10 99 142 5.7E-4 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_6644 6768313b14cfbd51da969301fcb44266 279 Pfam PF00795 Carbon-nitrogen hydrolase 5 259 6.2E-62 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_6644 6768313b14cfbd51da969301fcb44266 279 Gene3D G3DSA:3.60.110.10 3 277 2.3E-84 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_6644 6768313b14cfbd51da969301fcb44266 279 PANTHER PTHR23088:SF11 2 279 1.6E-119 T 19-04-2016 AMED_6644 6768313b14cfbd51da969301fcb44266 279 SUPERFAMILY SSF56317 3 276 2.62E-76 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_6644 6768313b14cfbd51da969301fcb44266 279 PANTHER PTHR23088 2 279 1.6E-119 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 SUPERFAMILY SSF81301 15 154 7.19E-37 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 Gene3D G3DSA:1.10.3090.10 416 438 4.3E-54 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 Gene3D G3DSA:1.10.3090.10 157 348 4.3E-54 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 Gene3D G3DSA:3.30.460.10 14 156 2.7E-43 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 SMART SM00471 255 415 1.1E-5 T 19-04-2016 IPR003607 HD/PDEase domain AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 TIGRFAM TIGR00277 HDIG: HDIG domain 256 341 9.3E-18 T 19-04-2016 IPR006675 HDIG domain AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 Pfam PF01966 HD domain 259 384 9.0E-15 T 19-04-2016 IPR006674 HD domain AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 PANTHER PTHR13734:SF5 16 472 3.0E-104 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 Pfam PF01743 Poly A polymerase head domain 33 156 3.5E-32 T 19-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 TIGRFAM TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase 7 469 1.4E-238 T 19-04-2016 IPR014065 tRNA adenylyltransferase AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 PANTHER PTHR13734 16 472 3.0E-104 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 SUPERFAMILY SSF81891 156 470 2.09E-63 T 19-04-2016 AMED_9346 8533c60699b8db2b45a91d6edaae5317 478 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 185 244 6.1E-16 T 19-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain AMED_8081 a1abcad2622468081d495dbac1f975cc 457 SUPERFAMILY SSF51126 52 429 8.77E-73 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_8081 a1abcad2622468081d495dbac1f975cc 457 Pfam PF00295 Glycosyl hydrolases family 28 207 442 2.8E-17 T 19-04-2016 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 AMED_8081 a1abcad2622468081d495dbac1f975cc 457 Gene3D G3DSA:2.160.20.10 54 442 1.1E-88 T 19-04-2016 IPR012334 Pectin lyase fold AMED_8081 a1abcad2622468081d495dbac1f975cc 457 Pfam PF12708 Pectate lyase superfamily protein 62 127 2.4E-9 T 19-04-2016 IPR024535 Pectate lyase superfamily protein AMED_8081 a1abcad2622468081d495dbac1f975cc 457 PANTHER PTHR31339:SF0 195 360 8.2E-78 T 19-04-2016 AMED_8081 a1abcad2622468081d495dbac1f975cc 457 PANTHER PTHR31339:SF0 59 175 8.2E-78 T 19-04-2016 AMED_8081 a1abcad2622468081d495dbac1f975cc 457 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 5 29 4.5E-5 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_8081 a1abcad2622468081d495dbac1f975cc 457 PANTHER PTHR31339 195 360 8.2E-78 T 19-04-2016 AMED_8081 a1abcad2622468081d495dbac1f975cc 457 PANTHER PTHR31339 59 175 8.2E-78 T 19-04-2016 AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 130 194 4.1E-13 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 48 124 2.5E-21 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 Gene3D G3DSA:2.80.10.50 49 184 6.7E-34 T 19-04-2016 AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 SUPERFAMILY SSF50370 44 184 7.69E-44 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 Pfam PF03664 Glycosyl hydrolase family 62 193 462 4.9E-146 T 19-04-2016 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 SMART SM00458 48 184 6.7E-14 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 PANTHER PTHR40631:SF1 191 493 1.5E-201 T 19-04-2016 AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 PANTHER PTHR40631 191 493 1.5E-201 T 19-04-2016 AMED_2907 e735ab2012dc751d3f2be84a3fbf279b 493 SUPERFAMILY SSF75005 212 477 3.49E-27 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 SMART SM00530 15 70 4.9E-16 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 Pfam PF01381 Helix-turn-helix 16 70 2.5E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 Gene3D G3DSA:2.60.120.10 91 182 6.2E-14 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 Gene3D G3DSA:1.10.260.40 10 80 6.0E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 Pfam PF07883 Cupin domain 113 180 3.1E-14 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 PANTHER PTHR10245 6 183 3.8E-30 T 19-04-2016 AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 SUPERFAMILY SSF47413 10 76 4.79E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 SUPERFAMILY SSF51182 90 180 6.14E-20 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_4213 033dfddc5727d0e1fe65f42adb2b32ae 197 PANTHER PTHR10245:SF20 6 183 3.8E-30 T 19-04-2016 AMED_0658 865cf36e56c679ac3017e67da613714b 567 SUPERFAMILY SSF117074 390 462 7.98E-8 T 19-04-2016 AMED_0658 865cf36e56c679ac3017e67da613714b 567 SUPERFAMILY SSF117074 182 238 2.35E-5 T 19-04-2016 AMED_0658 865cf36e56c679ac3017e67da613714b 567 Gene3D G3DSA:2.60.40.10 404 459 4.4E-8 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_6178 925d1b822565d4e6392b92a9904d4432 809 SUPERFAMILY SSF52540 158 276 5.22E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6178 925d1b822565d4e6392b92a9904d4432 809 Pfam PF05729 NACHT domain 179 300 9.2E-9 T 19-04-2016 AMED_6178 925d1b822565d4e6392b92a9904d4432 809 Gene3D G3DSA:3.40.50.300 161 245 2.3E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4409 6e1316b7912db4e6c1f3b865e65a6516 277 Pfam PF13377 Periplasmic binding protein-like domain 114 271 3.4E-31 T 19-04-2016 AMED_4409 6e1316b7912db4e6c1f3b865e65a6516 277 Gene3D G3DSA:3.40.50.2300 120 252 2.9E-45 T 19-04-2016 AMED_4409 6e1316b7912db4e6c1f3b865e65a6516 277 SUPERFAMILY SSF53822 34 272 3.81E-46 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4409 6e1316b7912db4e6c1f3b865e65a6516 277 Gene3D G3DSA:3.40.50.2300 21 119 4.0E-11 T 19-04-2016 AMED_4409 6e1316b7912db4e6c1f3b865e65a6516 277 PANTHER PTHR30146:SF34 14 270 4.7E-54 T 19-04-2016 AMED_4409 6e1316b7912db4e6c1f3b865e65a6516 277 PANTHER PTHR30146 14 270 4.7E-54 T 19-04-2016 AMED_4719 fec70f1592ff8f7ce81444f2ca323bbf 148 SUPERFAMILY SSF55961 1 142 9.49E-29 T 19-04-2016 AMED_4719 fec70f1592ff8f7ce81444f2ca323bbf 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 141 5.6E-17 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_4719 fec70f1592ff8f7ce81444f2ca323bbf 148 Gene3D G3DSA:3.30.530.20 3 143 4.7E-27 T 19-04-2016 IPR023393 START-like domain AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 Hamap MF_00013 Octanoyltransferase [lipB]. 14 221 33.833 T 19-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 SUPERFAMILY SSF55681 14 220 6.71E-65 T 19-04-2016 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 84 136 1.0E-18 T 19-04-2016 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 40 209 4.1E-39 T 19-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 80 95 - T 19-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 Pfam PF03099 Biotin/lipoate A/B protein ligase family 72 173 5.8E-8 T 19-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 Gene3D G3DSA:3.90.1550.10 14 216 5.5E-74 T 19-04-2016 AMED_2164 c25ba083594ac26562b4a9544935e4a7 247 PANTHER PTHR10993 15 230 1.6E-72 T 19-04-2016 AMED_1628 203542ae9a908006b81596392aecec6d 299 PANTHER PTHR11732 4 294 3.1E-118 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_1628 203542ae9a908006b81596392aecec6d 299 PRINTS PR00069 Aldo-keto reductase signature 149 166 2.4E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1628 203542ae9a908006b81596392aecec6d 299 PRINTS PR00069 Aldo-keto reductase signature 52 76 2.4E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1628 203542ae9a908006b81596392aecec6d 299 PRINTS PR00069 Aldo-keto reductase signature 226 250 2.4E-9 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1628 203542ae9a908006b81596392aecec6d 299 Pfam PF00248 Aldo/keto reductase family 18 292 6.8E-45 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1628 203542ae9a908006b81596392aecec6d 299 SUPERFAMILY SSF51430 13 294 5.89E-62 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1628 203542ae9a908006b81596392aecec6d 299 PANTHER PTHR11732:SF136 4 294 3.1E-118 T 19-04-2016 AMED_1628 203542ae9a908006b81596392aecec6d 299 Gene3D G3DSA:3.20.20.100 15 296 1.3E-58 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PANTHER PTHR26402:SF151 53 208 4.0E-19 T 19-04-2016 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PANTHER PTHR26402 53 208 4.0E-19 T 19-04-2016 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 Gene3D G3DSA:1.10.10.10 147 208 1.0E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 SUPERFAMILY SSF46894 138 208 8.16E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 7.7E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 7.7E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 7.7E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 SMART SM00421 145 202 1.9E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4827 f0cebdad3f55dd4f2cec2d8c61167ef6 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 3.0E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7522 95860d01178236ae2512fb85f10b4e4c 177 Pfam PF13302 Acetyltransferase (GNAT) domain 9 152 4.0E-27 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7522 95860d01178236ae2512fb85f10b4e4c 177 SUPERFAMILY SSF55729 3 162 1.36E-36 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7522 95860d01178236ae2512fb85f10b4e4c 177 Gene3D G3DSA:3.40.630.30 2 174 2.2E-42 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7522 95860d01178236ae2512fb85f10b4e4c 177 PANTHER PTHR13256 1 156 7.6E-27 T 19-04-2016 AMED_7522 95860d01178236ae2512fb85f10b4e4c 177 PANTHER PTHR13256:SF10 1 156 7.6E-27 T 19-04-2016 AMED_4877 5101d2e7b4a6b6a68b7e56034dd445eb 255 Pfam PF14230 Domain of unknown function (DUF4333) 169 244 3.5E-24 T 19-04-2016 IPR025637 Domain of unknown function DUF4333 AMED_9285 02eb20a7b8878f9be01c8e33794d9610 181 Pfam PF03551 Transcriptional regulator PadR-like family 6 83 5.1E-17 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_9285 02eb20a7b8878f9be01c8e33794d9610 181 PANTHER PTHR33169:SF11 2 177 4.4E-60 T 19-04-2016 AMED_9285 02eb20a7b8878f9be01c8e33794d9610 181 Gene3D G3DSA:1.10.10.10 1 86 4.1E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9285 02eb20a7b8878f9be01c8e33794d9610 181 PANTHER PTHR33169 2 177 4.4E-60 T 19-04-2016 AMED_9285 02eb20a7b8878f9be01c8e33794d9610 181 SUPERFAMILY SSF46785 2 172 1.17E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3556 8961c8aa1eee7b562befae2ae86f121a 172 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 46 2.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3556 8961c8aa1eee7b562befae2ae86f121a 172 Gene3D G3DSA:1.10.357.10 2 163 2.8E-19 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3556 8961c8aa1eee7b562befae2ae86f121a 172 SUPERFAMILY SSF46689 2 58 8.51E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3720 1b6cd4aebd7d0366194f3d993ebadc5b 75 SUPERFAMILY SSF55447 1 71 1.57E-14 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3720 1b6cd4aebd7d0366194f3d993ebadc5b 75 Gene3D G3DSA:3.30.390.50 1 69 4.4E-18 T 19-04-2016 AMED_3720 1b6cd4aebd7d0366194f3d993ebadc5b 75 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 2 64 1.5E-8 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_4144 3a06c362778b31b707eb775835c58813 502 Gene3D G3DSA:1.20.1250.20 17 198 7.9E-34 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 Gene3D G3DSA:1.20.1250.20 471 498 1.5E-19 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 Gene3D G3DSA:1.20.1250.20 270 425 1.5E-19 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 2.9E-6 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 267 292 2.9E-6 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 405 424 2.9E-6 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 81 103 2.9E-6 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 PANTHER PTHR23501:SF73 19 496 4.1E-142 T 19-04-2016 AMED_4144 3a06c362778b31b707eb775835c58813 502 SUPERFAMILY SSF103473 470 499 1.23E-66 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4144 3a06c362778b31b707eb775835c58813 502 SUPERFAMILY SSF103473 18 207 1.23E-66 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4144 3a06c362778b31b707eb775835c58813 502 SUPERFAMILY SSF103473 254 424 1.23E-66 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4144 3a06c362778b31b707eb775835c58813 502 Pfam PF07690 Major Facilitator Superfamily 24 415 3.1E-49 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4144 3a06c362778b31b707eb775835c58813 502 PANTHER PTHR23501 19 496 4.1E-142 T 19-04-2016 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 Gene3D G3DSA:3.40.1190.10 91 311 1.6E-64 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 110 134 - T 19-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 SUPERFAMILY SSF51984 3 91 2.75E-13 T 19-04-2016 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 457 31.925 T 19-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 SUPERFAMILY SSF53244 314 455 3.25E-35 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 Gene3D G3DSA:3.90.190.20 314 454 7.9E-42 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 PANTHER PTHR23135:SF2 1 467 1.3E-135 T 19-04-2016 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 455 2.4E-119 T 19-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 PANTHER PTHR23135 1 467 1.3E-135 T 19-04-2016 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 SUPERFAMILY SSF53623 105 310 6.54E-51 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 Pfam PF08245 Mur ligase middle domain 112 293 3.7E-29 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6253 b5cef719db2342546b2cee01fb20a623 469 Gene3D G3DSA:3.40.50.720 3 90 1.4E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6253 b5cef719db2342546b2cee01fb20a623 469 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 4 53 2.1E-6 T 19-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 SUPERFAMILY SSF48498 144 291 1.11E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 Pfam PF00440 Bacterial regulatory proteins, tetR family 83 126 4.5E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 SUPERFAMILY SSF46785 3 69 8.85E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 Gene3D G3DSA:1.10.10.10 2 68 5.9E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 SMART SM00345 6 65 8.4E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 PANTHER PTHR30055 65 170 8.7E-28 T 19-04-2016 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 139 288 6.9E-9 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 Gene3D G3DSA:1.10.10.60 69 131 1.4E-22 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 8.8E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 SUPERFAMILY SSF46689 70 134 3.2E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 Gene3D G3DSA:1.10.357.10 132 290 3.0E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8826 c5dc1a6e97a293170609ce30996459a4 293 PANTHER PTHR30055:SF93 65 170 8.7E-28 T 19-04-2016 AMED_9060 ec52e57443481704b628882ae2bc4632 334 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 7 284 23.94 T 19-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_9060 ec52e57443481704b628882ae2bc4632 334 SUPERFAMILY SSF56104 3 286 3.27E-91 T 19-04-2016 AMED_9060 ec52e57443481704b628882ae2bc4632 334 Gene3D G3DSA:3.30.200.20 3 106 7.9E-39 T 19-04-2016 AMED_9060 ec52e57443481704b628882ae2bc4632 334 Gene3D G3DSA:3.30.470.20 107 237 6.3E-46 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_9060 ec52e57443481704b628882ae2bc4632 334 PANTHER PTHR11609:SF6 3 290 1.6E-101 T 19-04-2016 AMED_9060 ec52e57443481704b628882ae2bc4632 334 ProSitePatterns PS01058 SAICAR synthetase signature 2. 194 202 - T 19-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_9060 ec52e57443481704b628882ae2bc4632 334 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 8 284 4.6E-61 T 19-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_9060 ec52e57443481704b628882ae2bc4632 334 Pfam PF01259 SAICAR synthetase 9 257 4.6E-88 T 19-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMED_9060 ec52e57443481704b628882ae2bc4632 334 PANTHER PTHR11609 3 290 1.6E-101 T 19-04-2016 AMED_1272 3b976f691889048adbc52f64c25e734a 472 SUPERFAMILY SSF56317 217 440 5.62E-22 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_1272 3b976f691889048adbc52f64c25e734a 472 Gene3D G3DSA:3.60.110.10 231 439 5.5E-17 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMED_7108 e4efbee83af0d88424e7390cca513af7 255 PANTHER PTHR10245 2 255 2.1E-36 T 19-04-2016 AMED_7108 e4efbee83af0d88424e7390cca513af7 255 PANTHER PTHR10245:SF7 2 255 2.1E-36 T 19-04-2016 AMED_8023 2fce773eade2ecc749562d7213ac4833 280 PANTHER PTHR12993 7 256 1.7E-57 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_8023 2fce773eade2ecc749562d7213ac4833 280 SUPERFAMILY SSF102588 7 267 2.49E-59 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_8023 2fce773eade2ecc749562d7213ac4833 280 Gene3D G3DSA:3.40.50.10320 6 279 1.9E-80 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_8023 2fce773eade2ecc749562d7213ac4833 280 PANTHER PTHR12993:SF13 7 256 1.7E-57 T 19-04-2016 AMED_8023 2fce773eade2ecc749562d7213ac4833 280 TIGRFAM TIGR03445 mycothiol_MshB: N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase 10 279 1.3E-98 T 19-04-2016 IPR017810 Mycothiol biosynthesis protein, MshB GO:0035595 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AMED_8023 2fce773eade2ecc749562d7213ac4833 280 Pfam PF02585 GlcNAc-PI de-N-acetylase 10 162 3.0E-26 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_8023 2fce773eade2ecc749562d7213ac4833 280 Hamap MF_01696 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase [mshB]. 9 280 38.441 T 19-04-2016 IPR017810 Mycothiol biosynthesis protein, MshB GO:0035595 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AMED_5416 998f8132828b2f947fd993a941b5914f 326 SMART SM00382 49 234 6.3E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5416 998f8132828b2f947fd993a941b5914f 326 Gene3D G3DSA:3.40.50.300 18 247 8.7E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5416 998f8132828b2f947fd993a941b5914f 326 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5416 998f8132828b2f947fd993a941b5914f 326 SUPERFAMILY SSF52540 21 246 3.8E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5416 998f8132828b2f947fd993a941b5914f 326 PANTHER PTHR24220 22 245 5.5E-88 T 19-04-2016 AMED_5416 998f8132828b2f947fd993a941b5914f 326 Pfam PF00005 ABC transporter 42 184 1.4E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0841 ad4083b2abd8801c2db4ae3fede98e08 166 SUPERFAMILY SSF52540 2 122 8.11E-14 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0841 ad4083b2abd8801c2db4ae3fede98e08 166 Pfam PF13671 AAA domain 3 128 8.8E-13 T 19-04-2016 AMED_0841 ad4083b2abd8801c2db4ae3fede98e08 166 Gene3D G3DSA:3.40.50.300 2 125 3.3E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1327 8d5da2debe07e8d061865863e2713700 338 Gene3D G3DSA:2.40.10.10 167 232 1.8E-18 T 19-04-2016 AMED_1327 8d5da2debe07e8d061865863e2713700 338 Pfam PF02983 Alpha-lytic protease prodomain 92 145 4.1E-9 T 19-04-2016 IPR004236 Peptidase S1A, alpha-lytic prodomain GO:0005576|GO:0006508|GO:0008236 AMED_1327 8d5da2debe07e8d061865863e2713700 338 PIRSF PIRSF001134 3 338 1.1E-61 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1327 8d5da2debe07e8d061865863e2713700 338 Gene3D G3DSA:3.30.300.50 91 159 5.7E-15 T 19-04-2016 AMED_1327 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 284 307 8.5E-22 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1327 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 308 322 8.5E-22 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1327 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 265 282 8.5E-22 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1327 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 244 264 8.5E-22 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1327 8d5da2debe07e8d061865863e2713700 338 PRINTS PR00861 Alpha-lytic endopeptidase serine protease (S2A) signature 190 204 8.5E-22 T 19-04-2016 IPR001316 Peptidase S1A, streptogrisin GO:0004252|GO:0006508 AMED_1327 8d5da2debe07e8d061865863e2713700 338 SUPERFAMILY SSF50494 166 325 1.27E-16 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_1327 8d5da2debe07e8d061865863e2713700 338 Gene3D G3DSA:2.40.10.10 243 318 1.7E-12 T 19-04-2016 AMED_1147 0a6373e8bf11a54c6d2686707a2d7b26 330 Pfam PF04228 Putative neutral zinc metallopeptidase 121 321 1.4E-22 T 19-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMED_1147 0a6373e8bf11a54c6d2686707a2d7b26 330 PANTHER PTHR30168 125 327 2.0E-19 T 19-04-2016 AMED_8875 35c2ce7cdefe4b7bd04ff3e92b413737 172 PANTHER PTHR30055 1 171 9.5E-21 T 19-04-2016 AMED_8875 35c2ce7cdefe4b7bd04ff3e92b413737 172 Pfam PF00440 Bacterial regulatory proteins, tetR family 1 37 6.6E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8875 35c2ce7cdefe4b7bd04ff3e92b413737 172 SUPERFAMILY SSF46689 2 37 6.14E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8875 35c2ce7cdefe4b7bd04ff3e92b413737 172 Gene3D G3DSA:1.10.10.60 1 35 1.4E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8875 35c2ce7cdefe4b7bd04ff3e92b413737 172 Gene3D G3DSA:1.10.357.10 36 171 2.1E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8875 35c2ce7cdefe4b7bd04ff3e92b413737 172 PANTHER PTHR30055:SF10 1 171 9.5E-21 T 19-04-2016 AMED_4602 c5d94b410407e0b56038573e2abfa662 205 Pfam PF08348 YheO-like PAS domain 8 116 1.1E-30 T 19-04-2016 IPR013559 YheO-like AMED_4602 c5d94b410407e0b56038573e2abfa662 205 PANTHER PTHR35568 3 205 1.8E-51 T 19-04-2016 AMED_4602 c5d94b410407e0b56038573e2abfa662 205 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 7 111 5.0E-38 T 19-04-2016 IPR013559 YheO-like AMED_4602 c5d94b410407e0b56038573e2abfa662 205 PANTHER PTHR35568:SF1 3 205 1.8E-51 T 19-04-2016 AMED_4602 c5d94b410407e0b56038573e2abfa662 205 Pfam PF13309 HTH domain 144 205 1.7E-16 T 19-04-2016 AMED_2803 9bf2966638be52cea9e045434822542e 376 PANTHER PTHR24421 52 376 7.8E-71 T 19-04-2016 AMED_2803 9bf2966638be52cea9e045434822542e 376 Pfam PF07730 Histidine kinase 182 244 1.7E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2803 9bf2966638be52cea9e045434822542e 376 PANTHER PTHR24421:SF26 52 376 7.8E-71 T 19-04-2016 AMED_2803 9bf2966638be52cea9e045434822542e 376 SUPERFAMILY SSF55874 258 373 2.55E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:3.40.228.10 146 352 1.7E-64 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:2.40.40.20 585 738 3.1E-30 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Pfam PF01568 Molydopterin dinucleotide binding domain 611 730 1.6E-22 T 19-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 PANTHER PTHR11615:SF139 271 738 1.4E-87 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 PANTHER PTHR11615:SF139 4 255 1.4E-87 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:2.20.25.90 3 58 1.5E-13 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 PANTHER PTHR11615 271 738 1.4E-87 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 PANTHER PTHR11615 4 255 1.4E-87 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:3.40.50.740 59 142 1.3E-53 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Gene3D G3DSA:3.40.50.740 353 578 1.3E-53 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 SMART SM00926 2 55 1.4E-11 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 SUPERFAMILY SSF53706 4 590 7.72E-151 T 19-04-2016 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Pfam PF00384 Molybdopterin oxidoreductase 58 512 1.0E-50 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 SUPERFAMILY SSF50692 573 738 2.28E-35 T 19-04-2016 IPR009010 Aspartate decarboxylase-like domain AMED_2006 56f18bde5817d57e39b3edc0d3285380 741 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 54 1.4E-7 T 19-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 AMED_9169 c82c8eafe68dcc9fbbe1be942a422021 279 PANTHER PTHR10245:SF7 9 278 1.2E-30 T 19-04-2016 AMED_9169 c82c8eafe68dcc9fbbe1be942a422021 279 Pfam PF01381 Helix-turn-helix 17 65 4.7E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_9169 c82c8eafe68dcc9fbbe1be942a422021 279 PANTHER PTHR10245 9 278 1.2E-30 T 19-04-2016 AMED_9169 c82c8eafe68dcc9fbbe1be942a422021 279 SMART SM00530 16 71 2.4E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_9169 c82c8eafe68dcc9fbbe1be942a422021 279 Gene3D G3DSA:1.10.260.40 15 81 1.9E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_9169 c82c8eafe68dcc9fbbe1be942a422021 279 SUPERFAMILY SSF47413 11 65 4.5E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 363 2.0E-119 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 SUPERFAMILY SSF53383 12 367 1.55E-109 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 Gene3D G3DSA:3.90.1150.10 237 367 8.4E-36 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 PANTHER PTHR30244:SF16 1 368 4.6E-113 T 19-04-2016 AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 PIRSF PIRSF000390 1 368 5.0E-110 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 Gene3D G3DSA:3.40.640.10 13 235 1.0E-77 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0208 1ca10ae3fa4cd902c63469225eb40150 368 PANTHER PTHR30244 1 368 4.6E-113 T 19-04-2016 AMED_3862 c454026a0621f5d2f9b2277d08325d2e 258 Gene3D G3DSA:1.10.12.10 201 257 5.7E-16 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_3862 c454026a0621f5d2f9b2277d08325d2e 258 SUPERFAMILY SSF52096 3 257 9.96E-83 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3862 c454026a0621f5d2f9b2277d08325d2e 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_3862 c454026a0621f5d2f9b2277d08325d2e 258 Gene3D G3DSA:3.90.226.10 4 199 6.8E-72 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3862 c454026a0621f5d2f9b2277d08325d2e 258 PANTHER PTHR11941 3 255 2.0E-85 T 19-04-2016 AMED_3862 c454026a0621f5d2f9b2277d08325d2e 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 257 4.4E-52 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 SUPERFAMILY SSF46785 8 80 1.32E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 PANTHER PTHR11717:SF18 98 234 1.1E-31 T 19-04-2016 AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 SUPERFAMILY SSF52788 108 230 2.62E-35 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 Pfam PF01022 Bacterial regulatory protein, arsR family 15 59 1.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 110 211 2.8E-19 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 SMART SM00226 108 231 1.1E-33 T 19-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 SMART SM00418 7 88 3.4E-10 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 Gene3D G3DSA:1.10.10.10 8 85 5.0E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 PANTHER PTHR11717 98 234 1.1E-31 T 19-04-2016 AMED_3321 3b87f2d2d433ab7c97f7da24a9b232c4 240 Gene3D G3DSA:3.40.50.270 107 229 2.1E-35 T 19-04-2016 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 PANTHER PTHR21403:SF0 1 280 2.9E-98 T 19-04-2016 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 182 5.3E-51 T 19-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 1 281 31.391 T 19-04-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 SUPERFAMILY SSF53850 1 207 1.47E-62 T 19-04-2016 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 PANTHER PTHR21403 1 280 2.9E-98 T 19-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 Pfam PF01634 ATP phosphoribosyltransferase 49 202 1.7E-40 T 19-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 SUPERFAMILY SSF54913 208 280 3.34E-21 T 19-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 189 280 1.3E-29 T 19-04-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 Pfam PF08029 HisG, C-terminal domain 206 277 8.0E-26 T 19-04-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 Gene3D G3DSA:3.30.70.120 209 280 2.0E-27 T 19-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 Gene3D G3DSA:3.40.190.10 1 106 3.2E-32 T 19-04-2016 AMED_4914 21cd2e0e36b0c163e50e5b0d420a95fc 281 Gene3D G3DSA:3.40.190.10 107 173 3.2E-26 T 19-04-2016 AMED_2508 82798d80a57f37e6fe90eff97f313d3a 225 Gene3D G3DSA:3.40.50.1820 18 182 1.6E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2508 82798d80a57f37e6fe90eff97f313d3a 225 Pfam PF00561 alpha/beta hydrolase fold 41 142 2.0E-16 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2508 82798d80a57f37e6fe90eff97f313d3a 225 PANTHER PTHR10992 12 165 3.2E-25 T 19-04-2016 AMED_2508 82798d80a57f37e6fe90eff97f313d3a 225 PANTHER PTHR10992:SF771 12 165 3.2E-25 T 19-04-2016 AMED_2508 82798d80a57f37e6fe90eff97f313d3a 225 SUPERFAMILY SSF53474 9 174 1.5E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 SUPERFAMILY SSF51430 7 269 1.57E-95 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PIRSF PIRSF000097 2 274 2.3E-89 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 230 245 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 125 142 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 93 111 8.3E-50 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 125 142 8.3E-50 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 37 61 8.3E-50 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 197 221 8.3E-50 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PRINTS PR00069 Aldo-keto reductase signature 159 188 8.3E-50 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 19-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 Pfam PF00248 Aldo/keto reductase family 24 194 1.3E-39 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 Pfam PF00248 Aldo/keto reductase family 202 259 1.7E-8 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 Gene3D G3DSA:3.20.20.100 5 274 6.9E-108 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6780 0d2fd2a46a0368fc0c8647eec9e752f6 277 PANTHER PTHR11732 3 275 6.8E-143 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 SUPERFAMILY SSF56327 169 427 7.2E-66 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 Pfam PF02056 Family 4 glycosyl hydrolase 4 185 2.7E-55 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 Gene3D G3DSA:3.90.110.10 168 425 1.3E-73 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 401 5.4E-60 T 19-04-2016 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 SUPERFAMILY SSF51735 2 166 8.2E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 165 176 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 4 19 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 110 130 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 139 156 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 73 89 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 94 107 1.4E-31 T 19-04-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 Gene3D G3DSA:3.40.50.720 2 166 3.8E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PANTHER PTHR32092:SF6 1 432 3.3E-235 T 19-04-2016 AMED_3913 17cc470ac2d445723dc7e3f4c6c505a3 435 PANTHER PTHR32092 1 432 3.3E-235 T 19-04-2016 AMED_5516 0f2392ac025ec504119179432ae7a2e9 81 Gene3D G3DSA:3.40.50.720 3 81 1.5E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5516 0f2392ac025ec504119179432ae7a2e9 81 SUPERFAMILY SSF51735 3 80 2.93E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5516 0f2392ac025ec504119179432ae7a2e9 81 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 3 80 4.9E-14 T 19-04-2016 AMED_5516 0f2392ac025ec504119179432ae7a2e9 81 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 55 75 1.7E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5516 0f2392ac025ec504119179432ae7a2e9 81 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 1.7E-10 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7005 0ec1d19fce756cdb30d35639d7642c8b 107 Pfam PF03795 YCII-related domain 1 105 2.0E-11 T 19-04-2016 IPR005545 YCII-related AMED_7005 0ec1d19fce756cdb30d35639d7642c8b 107 PANTHER PTHR35174 1 107 7.8E-17 T 19-04-2016 AMED_7005 0ec1d19fce756cdb30d35639d7642c8b 107 Gene3D G3DSA:3.30.70.1060 1 106 3.3E-30 T 19-04-2016 AMED_7005 0ec1d19fce756cdb30d35639d7642c8b 107 SUPERFAMILY SSF54909 3 106 2.57E-24 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_1765 7b489e64a610577f585a6745da27393c 427 Pfam PF13556 PucR C-terminal helix-turn-helix domain 339 397 6.0E-20 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_1765 7b489e64a610577f585a6745da27393c 427 PANTHER PTHR33744 266 407 1.5E-21 T 19-04-2016 AMED_1765 7b489e64a610577f585a6745da27393c 427 PANTHER PTHR33744:SF3 266 407 1.5E-21 T 19-04-2016 AMED_1765 7b489e64a610577f585a6745da27393c 427 Gene3D G3DSA:1.10.10.10 338 375 2.8E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 197 220 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 129 152 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 172 193 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 26 48 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 74 95 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 153 171 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PRINTS PR00721 Stomatin signature 109 126 4.5E-57 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 PANTHER PTHR10264 9 245 9.6E-91 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 SMART SM00244 19 177 4.0E-59 T 19-04-2016 IPR001107 Band 7 domain AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 Pfam PF01145 SPFH domain / Band 7 family 23 193 2.8E-32 T 19-04-2016 IPR001107 Band 7 domain AMED_1075 87d8c198428a1ac3a4a686712211f81b 293 SUPERFAMILY SSF117892 51 184 2.62E-40 T 19-04-2016 IPR001107 Band 7 domain AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 Gene3D G3DSA:1.10.357.10 68 199 2.7E-40 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 PANTHER PTHR30055:SF10 8 197 5.4E-43 T 19-04-2016 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 SUPERFAMILY SSF46689 14 92 3.54E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 PANTHER PTHR30055 8 197 5.4E-43 T 19-04-2016 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 Gene3D G3DSA:1.10.10.60 14 67 1.0E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 68 6.7E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 4.4E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5622 57a5cefc690d80a20b09e9adef4b3bc7 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 4.4E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PANTHER PTHR24322 174 205 1.8E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 Gene3D G3DSA:3.40.50.720 8 261 4.0E-67 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PANTHER PTHR24322:SF328 55 158 1.8E-44 T 19-04-2016 AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 161 189 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 Pfam PF00106 short chain dehydrogenase 11 213 4.3E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PANTHER PTHR24322:SF328 15 34 1.8E-44 T 19-04-2016 AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 208 7.5E-4 T 19-04-2016 AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PANTHER PTHR24322 15 34 1.8E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 SUPERFAMILY SSF51735 8 262 1.11E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 212 3.8E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 3.8E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.8E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 3.8E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 3.8E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 193 3.8E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PANTHER PTHR24322:SF328 174 205 1.8E-44 T 19-04-2016 AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PANTHER PTHR24322 55 158 1.8E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 2.7E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 193 2.7E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3859 d380cc0ff51e182cce05d0c08aacff29 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 2.7E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5768 94d94077cc0bd403475ec4bf734ae5e5 418 Gene3D G3DSA:3.40.190.10 34 161 3.4E-22 T 19-04-2016 AMED_5768 94d94077cc0bd403475ec4bf734ae5e5 418 Gene3D G3DSA:3.40.190.10 162 341 2.9E-30 T 19-04-2016 AMED_5768 94d94077cc0bd403475ec4bf734ae5e5 418 Pfam PF13416 Bacterial extracellular solute-binding protein 48 351 8.3E-39 T 19-04-2016 AMED_5768 94d94077cc0bd403475ec4bf734ae5e5 418 SUPERFAMILY SSF53850 18 416 1.65E-69 T 19-04-2016 AMED_5768 94d94077cc0bd403475ec4bf734ae5e5 418 PANTHER PTHR30061:SF1 1 415 6.9E-53 T 19-04-2016 AMED_5768 94d94077cc0bd403475ec4bf734ae5e5 418 PANTHER PTHR30061 1 415 6.9E-53 T 19-04-2016 AMED_7951 4577c0774f130eb8d785fa27669a8a69 426 SUPERFAMILY SSF53448 173 296 1.22E-27 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7951 4577c0774f130eb8d785fa27669a8a69 426 SUPERFAMILY SSF53448 325 388 1.22E-27 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7951 4577c0774f130eb8d785fa27669a8a69 426 Pfam PF02709 N-terminal domain of galactosyltransferase 334 370 2.9E-9 T 19-04-2016 IPR027791 Galactosyltransferase, C-terminal UniPathway: UPA00378 AMED_7951 4577c0774f130eb8d785fa27669a8a69 426 Gene3D G3DSA:3.90.550.10 170 389 1.0E-23 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 PIRSF PIRSF000362 1 439 2.9E-160 T 19-04-2016 IPR021163 Ferredoxin-NADP+ reductase, adrenodoxin-type GO:0016491|GO:0055114 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 Gene3D G3DSA:3.40.50.720 1 86 2.4E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 Gene3D G3DSA:3.40.50.720 308 436 2.4E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 PRINTS PR00419 Adrenodoxin reductase family signature 22 35 1.3E-7 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 PRINTS PR00419 Adrenodoxin reductase family signature 65 75 1.3E-7 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 PRINTS PR00419 Adrenodoxin reductase family signature 136 150 1.3E-7 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 PANTHER PTHR11938:SF4 1 438 5.2E-140 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 Gene3D G3DSA:3.50.50.60 87 307 2.8E-71 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1 158 3.8E-8 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 SUPERFAMILY SSF51971 251 308 2.59E-54 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 SUPERFAMILY SSF51971 1 202 2.59E-54 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 SUPERFAMILY SSF51971 297 432 4.0E-6 T 19-04-2016 AMED_0046 b3478cf71e0e05435a304d7557a0f24e 439 PANTHER PTHR11938 1 438 5.2E-140 T 19-04-2016 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 SUPERFAMILY SSF55681 163 501 1.49E-100 T 19-04-2016 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 17 502 8.8E-142 T 19-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 Pfam PF01336 OB-fold nucleic acid binding domain 70 145 2.4E-8 T 19-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PANTHER PTHR22594 13 503 1.5E-205 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 Gene3D G3DSA:2.40.50.140 17 155 3.6E-45 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 SUPERFAMILY SSF50249 15 155 6.37E-35 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 2.5E-32 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 2.5E-32 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 2.5E-32 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 2.5E-32 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 2.5E-32 T 19-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 PANTHER PTHR22594:SF4 13 503 1.5E-205 T 19-04-2016 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 Gene3D G3DSA:3.30.930.10 158 499 2.7E-103 T 19-04-2016 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 Pfam PF00152 tRNA synthetases class II (D, K and N) 163 500 3.9E-69 T 19-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMED_8734 cb30f0a3976b575d13d60fd3eb65baf7 503 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 503 35.273 T 19-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 SMART SM00267 161 333 1.5E-40 T 19-04-2016 IPR000160 GGDEF domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 Pfam PF08448 PAS fold 54 142 1.7E-7 T 19-04-2016 IPR013656 PAS fold-4 AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 SUPERFAMILY SSF55073 177 335 4.32E-33 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 Gene3D G3DSA:3.30.70.270 174 338 1.0E-40 T 19-04-2016 AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 SMART SM00052 343 594 7.5E-17 T 19-04-2016 IPR001633 EAL domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 Pfam PF00563 EAL domain 353 587 2.4E-29 T 19-04-2016 IPR001633 EAL domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 Gene3D G3DSA:3.20.20.450 349 601 4.0E-43 T 19-04-2016 IPR001633 EAL domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 PANTHER PTHR10799 198 444 5.2E-46 T 19-04-2016 AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 PANTHER PTHR10799:SF657 198 444 5.2E-46 T 19-04-2016 AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 Pfam PF00990 Diguanylate cyclase, GGDEF domain 173 328 3.1E-32 T 19-04-2016 IPR000160 GGDEF domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 170 331 6.3E-24 T 19-04-2016 IPR000160 GGDEF domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 SUPERFAMILY SSF55785 47 142 6.46E-12 T 19-04-2016 IPR000014 PAS domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 47 168 5.1E-10 T 19-04-2016 IPR000014 PAS domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 SUPERFAMILY SSF141868 351 599 1.05E-31 T 19-04-2016 IPR001633 EAL domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 SMART SM00091 46 113 1.6E-7 T 19-04-2016 IPR000014 PAS domain AMED_2874 5f2a40c85062074ab8b27cc7a269aac7 605 Gene3D G3DSA:3.30.450.20 47 144 1.8E-13 T 19-04-2016 AMED_8648 819b4309d988c8a4ebfbcd302091c991 278 SUPERFAMILY SSF55718 209 264 3.92E-5 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_8648 819b4309d988c8a4ebfbcd302091c991 278 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 18 176 3.5E-14 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_8648 819b4309d988c8a4ebfbcd302091c991 278 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 18 154 7.7E-14 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_8648 819b4309d988c8a4ebfbcd302091c991 278 SUPERFAMILY SSF109854 5 160 4.94E-17 T 19-04-2016 AMED_4281 0f0476e404c4a132e0a108a4850b05d6 204 PANTHER PTHR37298 1 204 1.1E-58 T 19-04-2016 AMED_4281 0f0476e404c4a132e0a108a4850b05d6 204 Pfam PF01865 Protein of unknown function DUF47 8 201 5.2E-25 T 19-04-2016 IPR018445 Putative phosphate transport regulator AMED_8708 d8db9970ea854299c94aa884480dbd10 273 SUPERFAMILY SSF52467 4 265 2.48E-60 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8708 d8db9970ea854299c94aa884480dbd10 273 PANTHER PTHR11085 3 237 2.1E-57 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_8708 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.30.1600.10 127 181 2.4E-20 T 19-04-2016 IPR026591 Sirtuin family, catalytic core small domain AMED_8708 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.30.1600.10 31 76 2.4E-20 T 19-04-2016 IPR026591 Sirtuin family, catalytic core small domain AMED_8708 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.40.50.1220 85 126 4.8E-14 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8708 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.40.50.1220 5 30 4.8E-14 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8708 d8db9970ea854299c94aa884480dbd10 273 Gene3D G3DSA:3.40.50.1220 196 265 4.8E-14 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_8708 d8db9970ea854299c94aa884480dbd10 273 Pfam PF02146 Sir2 family 20 181 2.0E-19 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_8708 d8db9970ea854299c94aa884480dbd10 273 PANTHER PTHR11085:SF10 3 237 2.1E-57 T 19-04-2016 AMED_5045 f2140a8faba769449bc194723d6db25f 273 Gene3D G3DSA:1.10.3720.10 9 260 3.5E-55 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5045 f2140a8faba769449bc194723d6db25f 273 SUPERFAMILY SSF161098 9 273 2.94E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5045 f2140a8faba769449bc194723d6db25f 273 PANTHER PTHR32243 10 273 9.9E-72 T 19-04-2016 AMED_5045 f2140a8faba769449bc194723d6db25f 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 266 4.8E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 PANTHER PTHR32268:SF11 18 371 9.2E-137 T 19-04-2016 AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 27 371 4.0E-131 T 19-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 PIRSF PIRSF000443 16 372 5.8E-124 T 19-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Gene3D G3DSA:3.40.50.1820 239 371 3.8E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Gene3D G3DSA:3.40.50.1820 38 207 3.8E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Pfam PF00561 alpha/beta hydrolase fold 55 358 1.3E-29 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 PANTHER PTHR32268 18 371 9.2E-137 T 19-04-2016 AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 SUPERFAMILY SSF53474 26 371 3.67E-90 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7928 b8aafbd8ceed2ec26f1a76d2a2d2576d 372 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 11 372 43.199 T 19-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 AMED_7861 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.50.50.60 108 177 6.9E-14 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7861 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.50.50.60 1 66 1.3E-4 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7861 479adf0d116cd09094fda209b492428d 188 Gene3D G3DSA:3.30.9.10 67 107 6.0E-7 T 19-04-2016 AMED_7861 479adf0d116cd09094fda209b492428d 188 SUPERFAMILY SSF51905 1 176 3.63E-19 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7861 479adf0d116cd09094fda209b492428d 188 Pfam PF01266 FAD dependent oxidoreductase 94 156 4.4E-11 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_7861 479adf0d116cd09094fda209b492428d 188 PANTHER PTHR13847 91 176 8.1E-17 T 19-04-2016 AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 Gene3D G3DSA:3.40.640.10 149 257 1.7E-4 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 Gene3D G3DSA:3.90.1150.10 11 148 8.1E-38 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 Gene3D G3DSA:3.90.1150.10 258 408 2.5E-56 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 PANTHER PTHR11751:SF110 55 402 7.0E-65 T 19-04-2016 AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 SUPERFAMILY SSF53383 54 405 4.94E-50 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 Pfam PF12897 Alanine-glyoxylate amino-transferase 8 411 1.7E-180 T 19-04-2016 IPR024551 Aminotransferase, putative AMED_2437 18fed3e1792aa74b619fc41bcdfc847e 413 PANTHER PTHR11751 55 402 7.0E-65 T 19-04-2016 AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 Gene3D G3DSA:3.40.50.720 145 260 7.6E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 Gene3D G3DSA:3.90.180.10 2 144 4.1E-40 T 19-04-2016 IPR011032 GroES-like AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 SUPERFAMILY SSF51735 111 267 3.45E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 SMART SM00829 10 319 6.2E-28 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 88 7.0E-10 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 SUPERFAMILY SSF50129 2 138 1.52E-36 T 19-04-2016 IPR011032 GroES-like AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 Pfam PF00107 Zinc-binding dehydrogenase 151 264 6.6E-27 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_7164 1718a443dfad1aade70aa81c6cc086f7 324 PANTHER PTHR11695 15 322 4.8E-89 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Gene3D G3DSA:3.90.550.10 11 240 1.5E-65 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 PANTHER PTHR22572 11 356 5.3E-99 T 19-04-2016 AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Gene3D G3DSA:2.160.10.10 255 356 1.1E-16 T 19-04-2016 AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Pfam PF00483 Nucleotidyl transferase 12 238 6.5E-45 T 19-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 SUPERFAMILY SSF53448 12 244 3.52E-68 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 SUPERFAMILY SSF53448 281 330 3.52E-68 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 308 339 5.1E-4 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_1016 dcd753ec4282c2dd6fd7a4561c1d2bf9 362 PANTHER PTHR22572:SF15 11 356 5.3E-99 T 19-04-2016 AMED_1045 cdb6d0105a54c532fe5d0372c25c9ef5 299 Pfam PF00535 Glycosyl transferase family 2 6 114 3.6E-24 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_1045 cdb6d0105a54c532fe5d0372c25c9ef5 299 PANTHER PTHR22916:SF29 3 212 1.2E-24 T 19-04-2016 AMED_1045 cdb6d0105a54c532fe5d0372c25c9ef5 299 Gene3D G3DSA:3.90.550.10 3 229 9.5E-35 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1045 cdb6d0105a54c532fe5d0372c25c9ef5 299 SUPERFAMILY SSF53448 3 224 1.41E-36 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1045 cdb6d0105a54c532fe5d0372c25c9ef5 299 PANTHER PTHR22916 3 212 1.2E-24 T 19-04-2016 AMED_9238 0a43b2427c9b3f021de64c90979d33c1 396 Gene3D G3DSA:3.40.50.300 5 186 4.8E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9238 0a43b2427c9b3f021de64c90979d33c1 396 Pfam PF13191 AAA ATPase domain 19 209 3.5E-23 T 19-04-2016 AMED_9238 0a43b2427c9b3f021de64c90979d33c1 396 SUPERFAMILY SSF52540 139 292 8.77E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9238 0a43b2427c9b3f021de64c90979d33c1 396 SUPERFAMILY SSF52540 6 97 8.77E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_9238 0a43b2427c9b3f021de64c90979d33c1 396 Gene3D G3DSA:1.10.10.10 323 383 1.6E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 SUPERFAMILY SSF53474 64 165 1.35E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 SUPERFAMILY SSF53474 386 491 1.35E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 SUPERFAMILY SSF53474 202 260 1.35E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 Gene3D G3DSA:3.40.50.1820 383 503 7.7E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 Gene3D G3DSA:3.40.50.1820 68 152 7.7E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 Gene3D G3DSA:3.40.50.1820 201 324 7.7E-55 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 PANTHER PTHR10992:SF863 203 258 1.9E-33 T 19-04-2016 AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 PANTHER PTHR10992 30 151 1.9E-33 T 19-04-2016 AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 PANTHER PTHR10992 203 258 1.9E-33 T 19-04-2016 AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 PANTHER PTHR10992:SF863 30 151 1.9E-33 T 19-04-2016 AMED_1217 9b270e24a92a8a3d8adc71e103763940 518 Pfam PF00561 alpha/beta hydrolase fold 101 491 2.8E-48 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF08238 Sel1 repeat 246 277 0.0013 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF08238 Sel1 repeat 293 308 1.2 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Gene3D G3DSA:1.25.40.10 178 336 8.0E-39 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Gene3D G3DSA:1.25.40.10 14 177 7.1E-32 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 118 149 40.0 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 54 85 200.0 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 22 53 8.6 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 150 181 140.0 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 278 309 0.52 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 246 277 0.0072 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 214 245 0.45 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SMART SM00671 86 117 240.0 T 19-04-2016 IPR006597 Sel1-like repeat AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SUPERFAMILY SSF81901 14 191 4.45E-24 T 19-04-2016 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF13374 Tetratricopeptide repeat 120 146 0.0031 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF07721 Tetratricopeptide repeat 58 78 0.83 T 19-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF07721 Tetratricopeptide repeat 23 46 0.67 T 19-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF07721 Tetratricopeptide repeat 152 174 0.0031 T 19-04-2016 IPR011717 Tetratricopeptide TPR-4 GO:0042802 UniPathway: UPA00694 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 PANTHER PTHR11102 32 321 8.5E-41 T 19-04-2016 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 SUPERFAMILY SSF81901 153 336 4.53E-33 T 19-04-2016 AMED_0281 238ea7d1ed9ba1a94fb72985968e519e 347 Pfam PF13432 Tetratricopeptide repeat 187 245 2.2E-5 T 19-04-2016 AMED_3945 65b99716f62b3266a953d41771befd5a 131 Gene3D G3DSA:1.10.1660.10 2 114 3.2E-29 T 19-04-2016 AMED_3945 65b99716f62b3266a953d41771befd5a 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.1E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3945 65b99716f62b3266a953d41771befd5a 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 1.1E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3945 65b99716f62b3266a953d41771befd5a 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.1E-10 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3945 65b99716f62b3266a953d41771befd5a 131 SUPERFAMILY SSF46955 2 112 2.97E-25 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_3945 65b99716f62b3266a953d41771befd5a 131 Pfam PF13411 MerR HTH family regulatory protein 2 67 1.1E-16 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3945 65b99716f62b3266a953d41771befd5a 131 PANTHER PTHR30204 2 128 3.8E-43 T 19-04-2016 AMED_3945 65b99716f62b3266a953d41771befd5a 131 PANTHER PTHR30204:SF4 2 128 3.8E-43 T 19-04-2016 AMED_3945 65b99716f62b3266a953d41771befd5a 131 SMART SM00422 1 69 4.2E-17 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3945 65b99716f62b3266a953d41771befd5a 131 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_8039 a86f6d4dfb45c8cb740447136b73b578 291 Pfam PF12679 ABC-2 family transporter protein 24 289 1.5E-11 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_3372 97f781b2cd2f133247f0a96eeb588f5d 61 PANTHER PTHR33630 1 61 3.2E-12 T 19-04-2016 AMED_3372 97f781b2cd2f133247f0a96eeb588f5d 61 Gene3D G3DSA:3.40.50.1820 1 61 2.2E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3372 97f781b2cd2f133247f0a96eeb588f5d 61 Pfam PF01083 Cutinase 1 60 2.1E-11 T 19-04-2016 IPR000675 Cutinase/acetylxylan esterase GO:0008152|GO:0016787 AMED_3372 97f781b2cd2f133247f0a96eeb588f5d 61 SUPERFAMILY SSF53474 1 60 1.12E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1334 15ca11ef12cfd437854042041f4968da 251 Gene3D G3DSA:3.40.50.720 2 249 1.5E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1334 15ca11ef12cfd437854042041f4968da 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 247 5.5E-31 T 19-04-2016 AMED_1334 15ca11ef12cfd437854042041f4968da 251 PANTHER PTHR24322:SF644 11 140 8.0E-16 T 19-04-2016 AMED_1334 15ca11ef12cfd437854042041f4968da 251 PANTHER PTHR24322:SF644 156 190 8.0E-16 T 19-04-2016 AMED_1334 15ca11ef12cfd437854042041f4968da 251 SUPERFAMILY SSF51735 2 249 1.34E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1334 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1334 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1334 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1334 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1334 15ca11ef12cfd437854042041f4968da 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.3E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1334 15ca11ef12cfd437854042041f4968da 251 PANTHER PTHR24322 11 140 8.0E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_1334 15ca11ef12cfd437854042041f4968da 251 PANTHER PTHR24322 156 190 8.0E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4599 07f462c8c2f7311cddda44fda60eea48 462 PANTHER PTHR11785:SF25 13 458 1.1E-208 T 19-04-2016 AMED_4599 07f462c8c2f7311cddda44fda60eea48 462 PANTHER PTHR11785 13 458 1.1E-208 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_4599 07f462c8c2f7311cddda44fda60eea48 462 Pfam PF00324 Amino acid permease 22 446 1.2E-113 T 19-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AMED_4599 07f462c8c2f7311cddda44fda60eea48 462 PIRSF PIRSF006060 5 460 1.1E-63 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_1548 b48161bb7c7d6f07f015563fd62541e7 149 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 31 115 4.9E-14 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_1548 b48161bb7c7d6f07f015563fd62541e7 149 Pfam PF04075 Domain of unknown function (DUF385) 12 99 3.3E-11 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_2587 9571231ba7960a6c60a37bde1bcde913 267 SUPERFAMILY SSF103481 23 112 3.01E-9 T 19-04-2016 AMED_2587 9571231ba7960a6c60a37bde1bcde913 267 SUPERFAMILY SSF103481 158 257 7.32E-10 T 19-04-2016 AMED_2587 9571231ba7960a6c60a37bde1bcde913 267 Pfam PF00892 EamA-like transporter family 122 252 1.6E-14 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_2587 9571231ba7960a6c60a37bde1bcde913 267 PANTHER PTHR22911 1 252 2.2E-32 T 19-04-2016 AMED_1997 18765a2afcbbf881e0b980d70323b3e7 416 PANTHER PTHR32027:SF0 7 404 3.4E-64 T 19-04-2016 AMED_1997 18765a2afcbbf881e0b980d70323b3e7 416 Pfam PF07969 Amidohydrolase family 129 399 1.5E-15 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_1997 18765a2afcbbf881e0b980d70323b3e7 416 Gene3D G3DSA:3.20.20.140 61 359 1.0E-64 T 19-04-2016 AMED_1997 18765a2afcbbf881e0b980d70323b3e7 416 SUPERFAMILY SSF51556 60 370 3.54E-60 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1997 18765a2afcbbf881e0b980d70323b3e7 416 PANTHER PTHR32027 7 404 3.4E-64 T 19-04-2016 AMED_5964 93dd9fab23932ca99d46b9ba54956d30 727 PANTHER PTHR30634 5 724 4.0E-222 T 19-04-2016 AMED_5964 93dd9fab23932ca99d46b9ba54956d30 727 PANTHER PTHR30634:SF10 5 724 4.0E-222 T 19-04-2016 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 Gene3D G3DSA:3.40.50.1820 339 454 1.2E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 Gene3D G3DSA:3.40.50.1820 41 121 1.2E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 Gene3D G3DSA:3.40.50.1820 167 295 1.2E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 Pfam PF00561 alpha/beta hydrolase fold 77 230 3.8E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 SUPERFAMILY SSF53474 169 223 7.47E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 SUPERFAMILY SSF53474 74 122 7.47E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 SUPERFAMILY SSF53474 356 442 7.47E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 PANTHER PTHR10992:SF863 167 262 5.4E-37 T 19-04-2016 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 PANTHER PTHR10992:SF863 3 120 5.4E-37 T 19-04-2016 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 PANTHER PTHR10992:SF863 346 461 5.4E-37 T 19-04-2016 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 Pfam PF08386 TAP-like protein 371 470 3.9E-18 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 PANTHER PTHR10992 167 262 5.4E-37 T 19-04-2016 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 PANTHER PTHR10992 3 120 5.4E-37 T 19-04-2016 AMED_6647 cecfb367cd29b6757d9909dd0853d25a 486 PANTHER PTHR10992 346 461 5.4E-37 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 Gene3D G3DSA:3.40.50.980 168 321 3.3E-33 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 Gene3D G3DSA:3.30.300.30 403 504 4.8E-33 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 Gene3D G3DSA:3.40.50.980 10 167 4.5E-33 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 Gene3D G3DSA:2.30.38.10 346 400 1.3E-12 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 Pfam PF00501 AMP-binding enzyme 14 406 7.4E-83 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 PANTHER PTHR24095 9 500 1.6E-135 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 SUPERFAMILY SSF56801 7 500 3.14E-131 T 19-04-2016 AMED_7644 7463a0ae9092d7d7a1c8cfa0358c062c 507 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 488 1.6E-23 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7323 e2998df8d942700f836dfbdc48847193 369 Pfam PF06114 Domain of unknown function (DUF955) 171 277 3.0E-16 T 19-04-2016 IPR010359 HTH domain, IrrE-type AMED_7323 e2998df8d942700f836dfbdc48847193 369 PANTHER PTHR10245 10 279 7.9E-26 T 19-04-2016 AMED_7323 e2998df8d942700f836dfbdc48847193 369 SMART SM00530 10 73 3.0E-5 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7323 e2998df8d942700f836dfbdc48847193 369 Gene3D G3DSA:1.10.260.40 11 73 4.0E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7323 e2998df8d942700f836dfbdc48847193 369 PANTHER PTHR10245:SF22 10 279 7.9E-26 T 19-04-2016 AMED_7323 e2998df8d942700f836dfbdc48847193 369 SUPERFAMILY SSF47413 10 74 2.49E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7323 e2998df8d942700f836dfbdc48847193 369 Pfam PF01381 Helix-turn-helix 14 72 2.5E-5 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2481 e52198da18f24aa0c4df6c1930613612 268 PANTHER PTHR11941 1 265 1.1E-122 T 19-04-2016 AMED_2481 e52198da18f24aa0c4df6c1930613612 268 SUPERFAMILY SSF52096 14 261 2.05E-69 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2481 e52198da18f24aa0c4df6c1930613612 268 Gene3D G3DSA:3.90.226.10 13 258 5.3E-72 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_2481 e52198da18f24aa0c4df6c1930613612 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 21 230 3.3E-43 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_2481 e52198da18f24aa0c4df6c1930613612 268 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_2481 e52198da18f24aa0c4df6c1930613612 268 PANTHER PTHR11941:SF21 1 265 1.1E-122 T 19-04-2016 AMED_3132 8f98f058b1e3c542f526d0ce4fddfa6a 203 PANTHER PTHR24096 22 130 3.1E-30 T 19-04-2016 AMED_3132 8f98f058b1e3c542f526d0ce4fddfa6a 203 Gene3D G3DSA:3.40.50.980 26 137 2.1E-29 T 19-04-2016 AMED_3132 8f98f058b1e3c542f526d0ce4fddfa6a 203 SUPERFAMILY SSF56801 17 139 2.49E-33 T 19-04-2016 AMED_3132 8f98f058b1e3c542f526d0ce4fddfa6a 203 Pfam PF00501 AMP-binding enzyme 32 159 2.6E-27 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 92 260 2.8E-35 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 92 259 2.1E-39 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 365 448 1.3E-11 T 19-04-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 PANTHER PTHR33392:SF6 154 445 5.5E-62 T 19-04-2016 AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 PANTHER PTHR33392:SF6 4 134 5.5E-62 T 19-04-2016 AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 PANTHER PTHR33392 4 134 5.5E-62 T 19-04-2016 AMED_6730 7211bf9d20dc79c41b94230b652e663b 477 PANTHER PTHR33392 154 445 5.5E-62 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 SUPERFAMILY SSF110296 590 886 1.14E-38 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 SUPERFAMILY SSF50370 56 188 8.1E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 Gene3D G3DSA:2.80.10.50 57 189 2.1E-20 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 Pfam PF15899 BNR-Asp box repeat 367 380 0.074 T 19-04-2016 IPR002860 BNR repeat AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 56 126 4.0E-13 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 PANTHER PTHR32438:SF9 452 765 9.0E-179 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 PANTHER PTHR32438:SF9 218 436 9.0E-179 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 Gene3D G3DSA:2.130.10.140 235 628 9.9E-82 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 Gene3D G3DSA:2.130.10.140 641 892 2.8E-39 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 SUPERFAMILY SSF110296 226 583 4.58E-83 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 PANTHER PTHR32438 452 765 9.0E-179 T 19-04-2016 AMED_8497 62eae2dda4345ece4ae65a2e1f509574 896 PANTHER PTHR32438 218 436 9.0E-179 T 19-04-2016 AMED_4288 4b3eb30dff751c7b5913707095ec00c7 337 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 34 296 1.1E-33 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_4288 4b3eb30dff751c7b5913707095ec00c7 337 PIRSF PIRSF035875 20 316 6.4E-85 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_4288 4b3eb30dff751c7b5913707095ec00c7 337 PANTHER PTHR30213:SF2 4 333 2.5E-94 T 19-04-2016 AMED_4288 4b3eb30dff751c7b5913707095ec00c7 337 Pfam PF03631 Virulence factor BrkB 43 298 3.6E-66 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_4288 4b3eb30dff751c7b5913707095ec00c7 337 PANTHER PTHR30213 4 333 2.5E-94 T 19-04-2016 AMED_4299 9febfdeb1a32b55416fc33ada12bee11 376 SUPERFAMILY SSF55931 4 356 8.93E-79 T 19-04-2016 AMED_4299 9febfdeb1a32b55416fc33ada12bee11 376 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 7 296 7.9E-72 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4299 9febfdeb1a32b55416fc33ada12bee11 376 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 9 291 6.1E-40 T 19-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4299 9febfdeb1a32b55416fc33ada12bee11 376 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 376 68.96 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_4299 9febfdeb1a32b55416fc33ada12bee11 376 PANTHER PTHR36510 1 364 5.1E-81 T 19-04-2016 AMED_8010 6452bcfbc1c08d3ede86b224a6eda5c2 305 Gene3D G3DSA:1.20.1510.10 8 216 7.7E-36 T 19-04-2016 IPR027469 Cation efflux protein transmembrane domain AMED_8010 6452bcfbc1c08d3ede86b224a6eda5c2 305 SUPERFAMILY SSF161111 6 219 1.57E-38 T 19-04-2016 AMED_8010 6452bcfbc1c08d3ede86b224a6eda5c2 305 Gene3D G3DSA:3.30.70.1350 237 297 3.9E-4 T 19-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain AMED_8010 6452bcfbc1c08d3ede86b224a6eda5c2 305 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 8 287 1.2E-37 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_8010 6452bcfbc1c08d3ede86b224a6eda5c2 305 PANTHER PTHR13414 5 277 9.0E-84 T 19-04-2016 AMED_8010 6452bcfbc1c08d3ede86b224a6eda5c2 305 Pfam PF01545 Cation efflux family 11 212 5.2E-35 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 36 95 9.2E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 Gene3D G3DSA:3.90.180.10 11 153 2.1E-36 T 19-04-2016 IPR011032 GroES-like AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 SUPERFAMILY SSF51735 121 268 1.29E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 148 169 - T 19-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 SMART SM00829 22 350 1.9E-14 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 Gene3D G3DSA:3.40.50.720 154 260 6.3E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 Pfam PF00107 Zinc-binding dehydrogenase 159 261 4.5E-21 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 SUPERFAMILY SSF50129 19 147 2.28E-28 T 19-04-2016 IPR011032 GroES-like AMED_3666 c1a3e222a5003103e04a1aa0cf24a727 352 PANTHER PTHR11695 23 352 3.1E-80 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8838 8dd3ad90a7b93c16306ce517a26f29b9 51 Pfam PF13404 AsnC-type helix-turn-helix domain 6 38 9.6E-11 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_8838 8dd3ad90a7b93c16306ce517a26f29b9 51 Gene3D G3DSA:1.10.10.10 6 38 1.3E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3226 b6a1ab121f9ed84452a6244d41ce59be 122 Gene3D G3DSA:3.10.450.50 2 113 3.5E-6 T 19-04-2016 IPR032710 NTF2-like domain AMED_3226 b6a1ab121f9ed84452a6244d41ce59be 122 SUPERFAMILY SSF54427 1 118 3.01E-10 T 19-04-2016 IPR032710 NTF2-like domain AMED_0285 9cb21dc805510929cf91e93bea077e7f 212 PANTHER PTHR23026:SF90 1 212 1.2E-35 T 19-04-2016 AMED_0285 9cb21dc805510929cf91e93bea077e7f 212 Pfam PF00881 Nitroreductase family 11 185 7.7E-21 T 19-04-2016 IPR029479 Nitroreductase AMED_0285 9cb21dc805510929cf91e93bea077e7f 212 SUPERFAMILY SSF55469 2 66 4.06E-30 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_0285 9cb21dc805510929cf91e93bea077e7f 212 SUPERFAMILY SSF55469 103 212 4.06E-30 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_0285 9cb21dc805510929cf91e93bea077e7f 212 Gene3D G3DSA:3.40.109.10 1 212 3.1E-30 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_0285 9cb21dc805510929cf91e93bea077e7f 212 PANTHER PTHR23026 1 212 1.2E-35 T 19-04-2016 AMED_1047 c3a96a602357933b0a6efb10293c30fb 439 PANTHER PTHR23028 314 433 1.9E-41 T 19-04-2016 AMED_1047 c3a96a602357933b0a6efb10293c30fb 439 PANTHER PTHR23028 10 298 1.9E-41 T 19-04-2016 AMED_1047 c3a96a602357933b0a6efb10293c30fb 439 Pfam PF01757 Acyltransferase family 44 417 7.5E-23 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_1130 87decd4fc034ed5c0804a386351c8b00 322 PANTHER PTHR30595 1 315 4.7E-57 T 19-04-2016 AMED_1130 87decd4fc034ed5c0804a386351c8b00 322 Pfam PF08279 HTH domain 5 60 9.0E-19 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_1130 87decd4fc034ed5c0804a386351c8b00 322 Gene3D G3DSA:1.10.10.10 1 63 8.9E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1130 87decd4fc034ed5c0804a386351c8b00 322 SUPERFAMILY SSF46785 2 59 2.78E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1130 87decd4fc034ed5c0804a386351c8b00 322 Pfam PF13280 WYL domain 140 317 1.0E-41 T 19-04-2016 IPR026881 WYL domain AMED_1130 87decd4fc034ed5c0804a386351c8b00 322 PANTHER PTHR30595:SF4 1 315 4.7E-57 T 19-04-2016 AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 SUPERFAMILY SSF48008 83 216 1.18E-24 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 Gene3D G3DSA:1.20.120.530 79 217 6.0E-26 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 1.0E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 SMART SM00895 86 208 2.1E-13 T 19-04-2016 IPR011711 GntR, C-terminal AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 SUPERFAMILY SSF46785 10 101 1.66E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 SMART SM00345 18 76 0.0035 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 Gene3D G3DSA:1.10.10.10 9 77 9.7E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7262 f6f583c6c1661f183455bcfe5a039be7 218 Pfam PF07729 FCD domain 86 207 4.0E-17 T 19-04-2016 IPR011711 GntR, C-terminal AMED_1003 e4a054649b3890aad54d252153aeea99 234 Gene3D G3DSA:3.40.50.980 29 84 3.4E-4 T 19-04-2016 AMED_1003 e4a054649b3890aad54d252153aeea99 234 TIGRFAM TIGR03089 TIGR03089: TIGR03089 family protein 13 229 9.6E-55 T 19-04-2016 IPR017523 Conserved hypothetical protein CHP03089 AMED_1003 e4a054649b3890aad54d252153aeea99 234 SUPERFAMILY SSF56801 15 229 1.07E-14 T 19-04-2016 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 SMART SM00839 159 386 4.6E-41 T 19-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 64 77 - T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 Gene3D G3DSA:3.40.50.720 162 322 2.0E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 PANTHER PTHR11606 21 320 5.9E-39 T 19-04-2016 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 PIRSF PIRSF000185 5 386 5.2E-77 T 19-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 SUPERFAMILY SSF53223 10 128 5.44E-26 T 19-04-2016 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 154 321 3.2E-35 T 19-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 56 70 4.8E-6 T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 187 207 4.8E-6 T 19-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 SUPERFAMILY SSF51735 154 374 4.34E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 Gene3D G3DSA:3.40.192.10 11 121 1.8E-25 T 19-04-2016 AMED_4966 12c666ac8d2edf31c9d2fed74147a033 397 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 19 117 4.9E-15 T 19-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 PANTHER PTHR18919 1 337 9.1E-76 T 19-04-2016 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 Gene3D G3DSA:3.40.47.10 247 294 1.5E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 PANTHER PTHR18919:SF102 1 337 9.1E-76 T 19-04-2016 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 SUPERFAMILY SSF53901 1 117 2.78E-10 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 SUPERFAMILY SSF53901 183 210 2.78E-10 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 Gene3D G3DSA:3.40.47.10 25 111 4.4E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 Gene3D G3DSA:3.40.47.10 177 207 4.4E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_2556 d1240e61a854a402b9e5cfb193190278 337 SUPERFAMILY SSF53901 214 326 1.01E-12 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7220 5caf32adc2889af0dda323ea9d94f2ca 188 PANTHER PTHR11080 9 188 3.6E-43 T 19-04-2016 AMED_7220 5caf32adc2889af0dda323ea9d94f2ca 188 PANTHER PTHR11080:SF37 9 188 3.6E-43 T 19-04-2016 AMED_7220 5caf32adc2889af0dda323ea9d94f2ca 188 SUPERFAMILY SSF52499 8 185 4.32E-48 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7220 5caf32adc2889af0dda323ea9d94f2ca 188 Pfam PF00857 Isochorismatase family 10 179 1.8E-40 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7220 5caf32adc2889af0dda323ea9d94f2ca 188 Gene3D G3DSA:3.40.50.850 9 182 7.5E-50 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 Gene3D G3DSA:1.10.540.10 5 127 1.3E-4 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 PANTHER PTHR10909 92 401 1.1E-74 T 19-04-2016 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 227 2.4E-23 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 393 1.8E-33 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 SUPERFAMILY SSF47203 243 395 1.16E-30 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 Gene3D G3DSA:2.40.110.10 131 236 5.9E-37 T 19-04-2016 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 Gene3D G3DSA:1.20.140.10 244 395 1.3E-43 T 19-04-2016 AMED_7904 c0a3a0ab7d7f331e950d5420181bb48c 401 SUPERFAMILY SSF56645 76 255 1.13E-45 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 2.1E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 SUPERFAMILY SSF47413 10 61 3.09E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 PANTHER PTHR30146 10 339 1.4E-104 T 19-04-2016 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 Gene3D G3DSA:3.40.50.2300 178 339 1.1E-59 T 19-04-2016 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 SUPERFAMILY SSF53822 83 339 1.68E-62 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 1.2E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 1.2E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 PANTHER PTHR30146:SF48 10 339 1.4E-104 T 19-04-2016 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 Pfam PF13377 Periplasmic binding protein-like domain 180 339 1.3E-36 T 19-04-2016 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 SMART SM00354 10 84 2.6E-18 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 Gene3D G3DSA:1.10.260.40 10 55 5.0E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3097 4d7f9841fe49c47d05eb2563823377ab 340 Gene3D G3DSA:3.40.50.2300 67 177 5.9E-15 T 19-04-2016 AMED_5767 3a8bc01472138216600262d0b0b04d5b 191 Gene3D G3DSA:3.40.50.360 21 176 1.1E-8 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5767 3a8bc01472138216600262d0b0b04d5b 191 SUPERFAMILY SSF52218 98 166 4.81E-9 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5767 3a8bc01472138216600262d0b0b04d5b 191 SUPERFAMILY SSF52218 21 69 4.81E-9 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5767 3a8bc01472138216600262d0b0b04d5b 191 PANTHER PTHR39201 11 191 6.1E-28 T 19-04-2016 AMED_5767 3a8bc01472138216600262d0b0b04d5b 191 PANTHER PTHR39201:SF1 11 191 6.1E-28 T 19-04-2016 AMED_5767 3a8bc01472138216600262d0b0b04d5b 191 Pfam PF12682 Flavodoxin 45 186 5.4E-15 T 19-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 161 2.4E-34 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 Gene3D G3DSA:1.10.1040.10 164 288 2.9E-28 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 PANTHER PTHR22981 6 284 1.8E-72 T 19-04-2016 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 8.6E-20 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 SUPERFAMILY SSF48179 162 286 2.83E-27 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 PIRSF PIRSF000103 1 293 1.7E-66 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 Gene3D G3DSA:3.40.50.720 2 162 4.7E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 SUPERFAMILY SSF51735 4 162 3.78E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5424 860bbcc331d272a8fa395a92d00c8758 328 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 8 21 - T 19-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PANTHER PTHR11206 278 462 2.4E-17 T 19-04-2016 AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PANTHER PTHR11206 26 44 2.4E-17 T 19-04-2016 AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 Pfam PF03023 MviN-like protein 83 513 1.5E-88 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 321 347 6.3E-29 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 107 123 6.3E-29 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 419 438 6.3E-29 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 88 107 6.3E-29 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 209 230 6.3E-29 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PRINTS PR01806 Virulence factor MviN signature 185 209 6.3E-29 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 57 572 8.6E-77 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PANTHER PTHR11206:SF90 278 462 2.4E-17 T 19-04-2016 AMED_2893 fd3e354d439b22d077b793f5cfcca91d 586 PANTHER PTHR11206:SF90 26 44 2.4E-17 T 19-04-2016 AMED_5121 2e1f8bbe037e0a278a2ad302b6444969 188 PANTHER PTHR11080 10 142 6.6E-32 T 19-04-2016 AMED_5121 2e1f8bbe037e0a278a2ad302b6444969 188 Pfam PF00857 Isochorismatase family 10 142 9.2E-34 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_5121 2e1f8bbe037e0a278a2ad302b6444969 188 SUPERFAMILY SSF52499 7 145 5.49E-42 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_5121 2e1f8bbe037e0a278a2ad302b6444969 188 Gene3D G3DSA:3.40.50.850 8 142 1.8E-40 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 SUPERFAMILY SSF51278 1 99 1.96E-43 T 19-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 95 1.1E-35 T 19-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 PANTHER PTHR33569:SF1 1 101 6.3E-51 T 19-04-2016 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 29.065 T 19-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 Pfam PF00699 Urease beta subunit 3 99 8.6E-41 T 19-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 PANTHER PTHR33569 1 101 6.3E-51 T 19-04-2016 AMED_8449 4dcf9e2f334ef0f58987ed97af5d24a8 101 Gene3D G3DSA:2.10.150.10 1 99 1.9E-45 T 19-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 AMED_2429 f001103a4ce67c5f72693b1ebecc7471 345 PANTHER PTHR33371 1 345 1.1E-88 T 19-04-2016 AMED_2429 f001103a4ce67c5f72693b1ebecc7471 345 PANTHER PTHR33371:SF4 1 345 1.1E-88 T 19-04-2016 AMED_2429 f001103a4ce67c5f72693b1ebecc7471 345 Pfam PF02470 MlaD protein 40 112 9.4E-17 T 19-04-2016 IPR003399 Mce/MlaD AMED_2429 f001103a4ce67c5f72693b1ebecc7471 345 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 295 3.2E-65 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1048 89048beba62f773a91aa2b78686527a8 287 PANTHER PTHR40036 10 285 1.3E-30 T 19-04-2016 AMED_1048 89048beba62f773a91aa2b78686527a8 287 SUPERFAMILY SSF53335 109 262 5.4E-18 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1048 89048beba62f773a91aa2b78686527a8 287 PANTHER PTHR40036:SF1 10 285 1.3E-30 T 19-04-2016 AMED_1048 89048beba62f773a91aa2b78686527a8 287 Gene3D G3DSA:3.40.50.150 128 281 5.3E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1048 89048beba62f773a91aa2b78686527a8 287 Pfam PF13578 Methyltransferase domain 132 244 1.3E-12 T 19-04-2016 AMED_4628 4d2576ce10c2456180eac3136ae1b594 229 SUPERFAMILY SSF53335 29 195 7.9E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4628 4d2576ce10c2456180eac3136ae1b594 229 PANTHER PTHR10108 29 176 1.2E-23 T 19-04-2016 AMED_4628 4d2576ce10c2456180eac3136ae1b594 229 Gene3D G3DSA:3.40.50.150 29 180 3.1E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4628 4d2576ce10c2456180eac3136ae1b594 229 Pfam PF08241 Methyltransferase domain 33 123 2.2E-19 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_6403 83a1e9f412b068c2048f0142967a095c 123 PANTHER PTHR36221 5 123 4.3E-34 T 19-04-2016 AMED_6403 83a1e9f412b068c2048f0142967a095c 123 Pfam PF05331 Protein of unknown function (DUF742) 12 120 6.6E-34 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_3634 b6bba339ff9c135286ea33d5fa6ed2d4 281 Pfam PF01061 ABC-2 type transporter 28 233 2.2E-22 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_3634 b6bba339ff9c135286ea33d5fa6ed2d4 281 PANTHER PTHR30294 29 276 1.2E-32 T 19-04-2016 AMED_3634 b6bba339ff9c135286ea33d5fa6ed2d4 281 PIRSF PIRSF006648 1 276 7.6E-30 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 PANTHER PTHR30328:SF21 3 192 1.3E-38 T 19-04-2016 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 Gene3D G3DSA:1.10.10.60 13 57 1.2E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.2E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.5E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.5E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 PANTHER PTHR30328 3 192 1.3E-38 T 19-04-2016 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 SUPERFAMILY SSF48498 78 192 8.9E-30 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 Pfam PF16859 Bacterial transcriptional repressor C-terminal 78 186 1.3E-34 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 SUPERFAMILY SSF46689 13 70 3.19E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7769 e9c726fbae640867cf9bc36a58a728c5 194 Gene3D G3DSA:1.10.357.10 58 193 2.5E-42 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6832 aa4070fd04e8286785694f79ce1a0333 366 SUPERFAMILY SSF55874 250 359 1.57E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6832 aa4070fd04e8286785694f79ce1a0333 366 PANTHER PTHR24421 6 359 2.8E-15 T 19-04-2016 AMED_6832 aa4070fd04e8286785694f79ce1a0333 366 Gene3D G3DSA:3.30.565.10 252 360 2.5E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6832 aa4070fd04e8286785694f79ce1a0333 366 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 271 360 2.3E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8001 cd48e0d621d97fe438d8a3ff4ecbf06b 200 Pfam PF12385 Papain-like cysteine protease AvrRpt2 39 177 3.1E-12 T 19-04-2016 IPR022118 Peptidase C70, AvrRpt2 KEGG: 00900+3.4.22.- AMED_3759 d22b2f0fba55c9c0e241967d3c4dbdff 423 Gene3D G3DSA:1.10.606.10 164 422 2.0E-70 T 19-04-2016 IPR016119 Bromoperoxidase/chloroperoxidase, C-terminal GO:0004601|GO:0055114 AMED_3759 d22b2f0fba55c9c0e241967d3c4dbdff 423 Gene3D G3DSA:1.20.144.10 40 163 9.6E-24 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3759 d22b2f0fba55c9c0e241967d3c4dbdff 423 PANTHER PTHR34599 5 422 1.2E-56 T 19-04-2016 AMED_3759 d22b2f0fba55c9c0e241967d3c4dbdff 423 SUPERFAMILY SSF48317 28 421 3.27E-59 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3759 d22b2f0fba55c9c0e241967d3c4dbdff 423 Pfam PF01569 PAP2 superfamily 293 422 6.0E-7 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_3759 d22b2f0fba55c9c0e241967d3c4dbdff 423 PANTHER PTHR34599:SF1 5 422 1.2E-56 T 19-04-2016 AMED_9235 26109c77ea5975d4198dc6c90cd74405 181 Pfam PF07681 DoxX 8 101 7.3E-10 T 19-04-2016 IPR032808 DoxX family AMED_8880 854b02c7708eaef5a4fe4af1c8da6148 493 Pfam PF01435 Peptidase family M48 84 312 1.0E-14 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_8880 854b02c7708eaef5a4fe4af1c8da6148 493 Gene3D G3DSA:3.30.2010.10 77 165 1.6E-11 T 19-04-2016 AMED_6371 d655dfdf923602f5cd928de41c490e72 409 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 106 275 1.2E-35 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_6371 d655dfdf923602f5cd928de41c490e72 409 PANTHER PTHR33392:SF6 6 150 7.7E-65 T 19-04-2016 AMED_6371 d655dfdf923602f5cd928de41c490e72 409 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 106 275 2.6E-43 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_6371 d655dfdf923602f5cd928de41c490e72 409 PANTHER PTHR33392 169 354 7.7E-65 T 19-04-2016 AMED_6371 d655dfdf923602f5cd928de41c490e72 409 PANTHER PTHR33392 6 150 7.7E-65 T 19-04-2016 AMED_6371 d655dfdf923602f5cd928de41c490e72 409 PANTHER PTHR33392:SF6 169 354 7.7E-65 T 19-04-2016 AMED_1497 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 Gene3D G3DSA:2.30.110.10 13 134 5.5E-33 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1497 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 16 134 2.0E-24 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_1497 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 PANTHER PTHR35176:SF1 14 136 1.5E-28 T 19-04-2016 AMED_1497 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 PANTHER PTHR35176 14 136 1.5E-28 T 19-04-2016 AMED_1497 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 SUPERFAMILY SSF50475 13 134 2.68E-28 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1497 b5c8c1950afcfeeb1cd0d18e64e6ec08 136 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 100 2.6E-9 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_3344 c45d4f93ab1e082a26e3f30d64e7c0e0 332 SUPERFAMILY SSF56112 26 61 2.19E-8 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_3344 c45d4f93ab1e082a26e3f30d64e7c0e0 332 SUPERFAMILY SSF56112 100 231 2.19E-8 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_3344 c45d4f93ab1e082a26e3f30d64e7c0e0 332 Gene3D G3DSA:1.10.510.10 184 220 7.2E-4 T 19-04-2016 AMED_4918 878b7d8ed45bedd98ea5c24acece9f6d 233 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 97 201 9.5E-14 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_4918 878b7d8ed45bedd98ea5c24acece9f6d 233 Pfam PF13419 Haloacid dehalogenase-like hydrolase 20 201 5.3E-24 T 19-04-2016 IPR023214 HAD-like domain AMED_4918 878b7d8ed45bedd98ea5c24acece9f6d 233 SUPERFAMILY SSF56784 18 205 1.03E-45 T 19-04-2016 IPR023214 HAD-like domain AMED_4918 878b7d8ed45bedd98ea5c24acece9f6d 233 Gene3D G3DSA:3.40.50.1000 15 31 9.7E-37 T 19-04-2016 IPR023214 HAD-like domain AMED_4918 878b7d8ed45bedd98ea5c24acece9f6d 233 Gene3D G3DSA:3.40.50.1000 106 205 9.7E-37 T 19-04-2016 IPR023214 HAD-like domain AMED_4918 878b7d8ed45bedd98ea5c24acece9f6d 233 PANTHER PTHR18901 10 205 1.2E-45 T 19-04-2016 AMED_4872 31d57ae448845f905b56a1546866e9da 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 1.1E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4872 31d57ae448845f905b56a1546866e9da 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 1.1E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4872 31d57ae448845f905b56a1546866e9da 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 1.1E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4872 31d57ae448845f905b56a1546866e9da 151 SMART SM00344 6 113 2.6E-36 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_4872 31d57ae448845f905b56a1546866e9da 151 Gene3D G3DSA:3.30.70.920 59 138 2.1E-20 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_4872 31d57ae448845f905b56a1546866e9da 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 19-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMED_4872 31d57ae448845f905b56a1546866e9da 151 Pfam PF13404 AsnC-type helix-turn-helix domain 8 47 2.8E-15 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4872 31d57ae448845f905b56a1546866e9da 151 SUPERFAMILY SSF54909 67 145 1.19E-12 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4872 31d57ae448845f905b56a1546866e9da 151 SUPERFAMILY SSF46785 6 65 7.03E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4872 31d57ae448845f905b56a1546866e9da 151 Gene3D G3DSA:1.10.10.10 9 58 4.3E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4872 31d57ae448845f905b56a1546866e9da 151 Pfam PF01037 Lrp/AsnC ligand binding domain 71 142 3.3E-13 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_4872 31d57ae448845f905b56a1546866e9da 151 PANTHER PTHR30154:SF2 1 149 8.5E-42 T 19-04-2016 AMED_4872 31d57ae448845f905b56a1546866e9da 151 PANTHER PTHR30154 1 149 8.5E-42 T 19-04-2016 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PANTHER PTHR10283:SF67 1 430 1.0E-140 T 19-04-2016 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 365 390 3.7E-10 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 3.7E-10 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 3.7E-10 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 398 422 3.7E-10 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PRINTS PR00758 Arsenical pump membrane protein signature 219 244 3.7E-10 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 PANTHER PTHR10283 1 430 1.0E-140 T 19-04-2016 AMED_6581 56c5df6b7bf15f46b8fa306866c9f0c3 430 Pfam PF03600 Citrate transporter 14 369 4.4E-50 T 19-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 AMED_5197 6ea902450ba0d77510b5950dc1ec063e 290 Gene3D G3DSA:1.10.3720.10 24 276 3.6E-53 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5197 6ea902450ba0d77510b5950dc1ec063e 290 PANTHER PTHR32243:SF31 14 290 2.2E-106 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_5197 6ea902450ba0d77510b5950dc1ec063e 290 SUPERFAMILY SSF161098 24 290 1.5E-61 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5197 6ea902450ba0d77510b5950dc1ec063e 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 277 6.6E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5197 6ea902450ba0d77510b5950dc1ec063e 290 PANTHER PTHR32243 14 290 2.2E-106 T 19-04-2016 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 SUPERFAMILY SSF46785 27 158 4.38E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 98 6.02E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 102 118 6.02E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 82 6.02E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 Gene3D G3DSA:1.10.10.10 53 112 1.8E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 Pfam PF01047 MarR family 55 105 3.6E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 SMART SM00347 41 143 1.6E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 PANTHER PTHR39515 13 158 2.6E-25 T 19-04-2016 AMED_1952 c5a4630e322a0edaadf8854ac76ee20e 159 Gene3D G3DSA:1.10.287.100 114 158 6.1E-12 T 19-04-2016 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 AMED_6910 9d2ab6812e83db61decef80f0ca19aa1 260 SUPERFAMILY SSF53335 15 168 2.06E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6910 9d2ab6812e83db61decef80f0ca19aa1 260 Gene3D G3DSA:3.40.50.150 15 137 3.9E-12 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6910 9d2ab6812e83db61decef80f0ca19aa1 260 Pfam PF08241 Methyltransferase domain 48 125 1.2E-7 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF07995 Glucose / Sorbosone dehydrogenase 53 380 1.4E-33 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 PANTHER PTHR19328 29 398 9.4E-51 T 19-04-2016 AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF00801 PKD domain 413 477 6.2E-8 T 19-04-2016 IPR000601 PKD domain AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 SMART SM00089 401 485 2.2E-7 T 19-04-2016 IPR022409 PKD/Chitinase domain AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 SUPERFAMILY SSF49299 401 480 2.09E-10 T 19-04-2016 IPR000601 PKD domain AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF08310 LGFP repeat 903 954 6.6E-22 T 19-04-2016 IPR013207 LGFP AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF08310 LGFP repeat 732 788 2.8E-16 T 19-04-2016 IPR013207 LGFP AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF08310 LGFP repeat 847 902 4.4E-21 T 19-04-2016 IPR013207 LGFP AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF08310 LGFP repeat 681 728 9.8E-9 T 19-04-2016 IPR013207 LGFP AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Pfam PF08310 LGFP repeat 790 845 4.6E-20 T 19-04-2016 IPR013207 LGFP AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Gene3D G3DSA:2.120.10.30 24 408 1.0E-70 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 SUPERFAMILY SSF50952 32 399 6.41E-17 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_8938 a635682490049a84d6cf8a26b1f6bac6 994 Gene3D G3DSA:2.60.40.670 409 480 1.5E-13 T 19-04-2016 IPR000601 PKD domain AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 Pfam PF01761 3-dehydroquinate synthase 66 322 7.8E-94 T 19-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 SUPERFAMILY SSF56796 11 352 1.83E-97 T 19-04-2016 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 15 338 1.1E-104 T 19-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 PIRSF PIRSF001455 9 345 3.8E-96 T 19-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 Gene3D G3DSA:3.40.50.1970 12 171 2.5E-52 T 19-04-2016 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 5 355 37.025 T 19-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 PANTHER PTHR21090 1 358 8.8E-142 T 19-04-2016 AMED_2735 cffe62e7553a27f9c799f80f9ede110c 369 Gene3D G3DSA:1.20.1090.10 172 348 2.4E-59 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 Pfam PF00704 Glycosyl hydrolases family 18 256 569 5.2E-24 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 SMART SM00060 162 233 6.4E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 SUPERFAMILY SSF51445 253 579 3.33E-54 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 Gene3D G3DSA:2.60.120.260 23 155 1.2E-11 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 PANTHER PTHR11177:SF195 494 581 1.0E-113 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 PANTHER PTHR11177:SF195 225 431 1.0E-113 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 PANTHER PTHR11177:SF195 447 475 1.0E-113 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 Pfam PF02018 Carbohydrate binding domain 28 137 1.0E-9 T 19-04-2016 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 PANTHER PTHR11177 494 581 1.0E-113 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 PANTHER PTHR11177 225 431 1.0E-113 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 PANTHER PTHR11177 447 475 1.0E-113 T 19-04-2016 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 Gene3D G3DSA:2.60.40.10 161 239 2.7E-15 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 ProSitePatterns PS01095 Chitinases family 18 active site. 366 374 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 SUPERFAMILY SSF49265 159 245 1.26E-13 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 SUPERFAMILY SSF49785 28 152 5.53E-11 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 SMART SM00636 254 569 2.3E-6 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_7581 01a3aad43d380d10c8b1750e0b2ecbf8 588 Gene3D G3DSA:3.20.20.80 252 577 9.8E-61 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0456 a3280c6c083756d91cba9b942da21375 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 133 4.1E-27 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0456 a3280c6c083756d91cba9b942da21375 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 146 209 8.1E-5 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0456 a3280c6c083756d91cba9b942da21375 249 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 4 232 42.859 T 19-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 AMED_0456 a3280c6c083756d91cba9b942da21375 249 Gene3D G3DSA:3.40.50.1240 6 248 1.9E-89 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_0456 a3280c6c083756d91cba9b942da21375 249 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 19-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 AMED_0456 a3280c6c083756d91cba9b942da21375 249 SUPERFAMILY SSF53254 6 224 8.57E-71 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_0456 a3280c6c083756d91cba9b942da21375 249 PANTHER PTHR11931 6 248 2.6E-144 T 19-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 AMED_0456 a3280c6c083756d91cba9b942da21375 249 SMART SM00855 6 191 2.9E-23 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_0456 a3280c6c083756d91cba9b942da21375 249 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 6 249 2.2E-111 T 19-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 180 213 220.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 96 129 13.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 136 169 18.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 SMART SM00028 219 252 290.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 Gene3D G3DSA:1.25.40.10 103 293 4.5E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 SUPERFAMILY SSF48452 101 285 8.79E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8652 e3729e7109b179530b0a6155fb4e3c7b 848 Pfam PF12770 CHAT domain 609 834 3.5E-31 T 19-04-2016 IPR024983 CHAT domain AMED_6173 0dafa74ff2ff04ec24cc4b50a7630534 115 PANTHER PTHR11751 13 106 7.5E-14 T 19-04-2016 AMED_6173 0dafa74ff2ff04ec24cc4b50a7630534 115 PANTHER PTHR11751:SF432 13 106 7.5E-14 T 19-04-2016 AMED_6173 0dafa74ff2ff04ec24cc4b50a7630534 115 SMART SM00345 16 75 5.0E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6173 0dafa74ff2ff04ec24cc4b50a7630534 115 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 4.0E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_6173 0dafa74ff2ff04ec24cc4b50a7630534 115 SUPERFAMILY SSF46785 10 79 6.42E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6173 0dafa74ff2ff04ec24cc4b50a7630534 115 Gene3D G3DSA:1.10.10.10 14 82 2.0E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6197 b3cb433cf8376ca36933e699bc2b37e2 377 Gene3D G3DSA:3.30.565.10 279 372 1.8E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6197 b3cb433cf8376ca36933e699bc2b37e2 377 PANTHER PTHR24421:SF26 49 371 3.0E-59 T 19-04-2016 AMED_6197 b3cb433cf8376ca36933e699bc2b37e2 377 SUPERFAMILY SSF55874 277 372 9.04E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6197 b3cb433cf8376ca36933e699bc2b37e2 377 Pfam PF07730 Histidine kinase 176 241 1.3E-15 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6197 b3cb433cf8376ca36933e699bc2b37e2 377 PANTHER PTHR24421 49 371 3.0E-59 T 19-04-2016 AMED_5778 020300d433940ad4ede8cd4e55046330 135 PANTHER PTHR41252 1 135 7.5E-28 T 19-04-2016 AMED_5778 020300d433940ad4ede8cd4e55046330 135 SUPERFAMILY SSF54427 8 132 7.88E-34 T 19-04-2016 IPR032710 NTF2-like domain AMED_5778 020300d433940ad4ede8cd4e55046330 135 Pfam PF12680 SnoaL-like domain 13 119 1.4E-16 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_5778 020300d433940ad4ede8cd4e55046330 135 Gene3D G3DSA:3.10.450.50 6 133 1.1E-35 T 19-04-2016 IPR032710 NTF2-like domain AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 7.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 7.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 7.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 228 242 7.5E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 Gene3D G3DSA:3.40.50.1820 16 283 2.7E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 Pfam PF00561 alpha/beta hydrolase fold 38 268 3.1E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 SUPERFAMILY SSF53474 15 283 3.56E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6419 7f4e03d8bcc325aac3a1a1fed914116c 284 PANTHER PTHR10992 16 284 1.2E-46 T 19-04-2016 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 SUPERFAMILY SSF53474 65 320 8.6E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 Pfam PF12697 Alpha/beta hydrolase family 69 313 3.8E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 PRINTS PR00412 Epoxide hydrolase signature 296 318 9.3E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 PRINTS PR00412 Epoxide hydrolase signature 93 108 9.3E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 PRINTS PR00412 Epoxide hydrolase signature 73 91 9.3E-6 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 PANTHER PTHR10992 66 321 4.4E-30 T 19-04-2016 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 PANTHER PTHR10992:SF771 66 321 4.4E-30 T 19-04-2016 AMED_6671 e7f378f6712f2dc6058e5fc01cdbfe57 346 Gene3D G3DSA:3.40.50.1820 16 318 3.8E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5254 87989c88fc7c4cff82cedd947b71cc65 320 SUPERFAMILY SSF56281 17 311 2.9E-49 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5254 87989c88fc7c4cff82cedd947b71cc65 320 Pfam PF00753 Metallo-beta-lactamase superfamily 34 222 1.6E-10 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5254 87989c88fc7c4cff82cedd947b71cc65 320 Gene3D G3DSA:3.60.15.10 13 249 3.7E-41 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5254 87989c88fc7c4cff82cedd947b71cc65 320 SMART SM00849 34 223 7.1E-7 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5254 87989c88fc7c4cff82cedd947b71cc65 320 PANTHER PTHR11935:SF5 4 241 1.7E-31 T 19-04-2016 AMED_5254 87989c88fc7c4cff82cedd947b71cc65 320 PANTHER PTHR11935 4 241 1.7E-31 T 19-04-2016 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 Gene3D G3DSA:3.40.50.2300 192 328 6.5E-53 T 19-04-2016 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 Pfam PF13377 Periplasmic binding protein-like domain 187 347 5.5E-44 T 19-04-2016 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 Gene3D G3DSA:1.10.260.40 5 55 1.6E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 SMART SM00354 5 74 2.8E-21 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 SUPERFAMILY SSF53822 77 348 5.89E-69 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 PANTHER PTHR30146 5 347 6.0E-102 T 19-04-2016 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 SUPERFAMILY SSF47413 4 63 1.04E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 Gene3D G3DSA:3.40.50.2300 56 191 3.9E-29 T 19-04-2016 AMED_2440 74962aeb1c0932bc0f629dda1144bfef 353 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 52 3.4E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 PANTHER PTHR11732 3 259 2.3E-88 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 SUPERFAMILY SSF51430 8 258 1.83E-62 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 Gene3D G3DSA:3.20.20.100 6 258 3.9E-70 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 Pfam PF00248 Aldo/keto reductase family 25 253 4.6E-23 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.2E-28 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 152 181 1.2E-28 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 118 135 1.2E-28 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 89 107 1.2E-28 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_4977 70809c73077c9feaaf240b896c1d2de5 259 PRINTS PR00069 Aldo-keto reductase signature 189 213 1.2E-28 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_5943 02df5c4c08857abb08d50ceeef671d06 291 PANTHER PTHR31956 44 278 1.7E-72 T 19-04-2016 AMED_5943 02df5c4c08857abb08d50ceeef671d06 291 Pfam PF04185 Phosphoesterase family 66 275 8.3E-31 T 19-04-2016 IPR007312 Phosphoesterase GO:0016788 AMED_5943 02df5c4c08857abb08d50ceeef671d06 291 SUPERFAMILY SSF53649 47 275 7.63E-6 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_5943 02df5c4c08857abb08d50ceeef671d06 291 Gene3D G3DSA:3.40.720.10 47 122 3.0E-4 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_5943 02df5c4c08857abb08d50ceeef671d06 291 PANTHER PTHR31956:SF13 44 278 1.7E-72 T 19-04-2016 AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 Gene3D G3DSA:1.10.150.130 28 117 1.4E-19 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 SUPERFAMILY SSF56349 150 324 5.89E-48 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 SUPERFAMILY SSF47823 29 119 2.35E-13 T 19-04-2016 IPR010998 Integrase, Lambda-type, N-terminal AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 PANTHER PTHR30349:SF11 22 326 4.3E-86 T 19-04-2016 AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 30 110 4.9E-15 T 19-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 Gene3D G3DSA:1.10.443.10 148 318 6.7E-51 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 25 326 33.106 T 19-04-2016 IPR023009 Tyrosine recombinase XerC/XerD AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 PANTHER PTHR30349 22 326 4.3E-86 T 19-04-2016 AMED_1970 c3e37bcb0afd7e25c3fac7b519113912 326 Pfam PF00589 Phage integrase family 140 311 2.0E-41 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_4036 29c47f9dfaef6d7fdde6276fb6658de8 67 Gene3D G3DSA:3.90.820.10 10 66 7.3E-25 T 19-04-2016 AMED_4036 29c47f9dfaef6d7fdde6276fb6658de8 67 SMART SM00923 3 53 3.1E-24 T 19-04-2016 IPR005153 MbtH-like protein AMED_4036 29c47f9dfaef6d7fdde6276fb6658de8 67 PANTHER PTHR38444:SF1 1 66 3.7E-28 T 19-04-2016 AMED_4036 29c47f9dfaef6d7fdde6276fb6658de8 67 PANTHER PTHR38444 1 66 3.7E-28 T 19-04-2016 AMED_4036 29c47f9dfaef6d7fdde6276fb6658de8 67 Pfam PF03621 MbtH-like protein 2 52 8.2E-23 T 19-04-2016 IPR005153 MbtH-like protein AMED_4036 29c47f9dfaef6d7fdde6276fb6658de8 67 SUPERFAMILY SSF160582 2 66 4.45E-25 T 19-04-2016 AMED_0990 c7de1de2cfa77749d9cc92d314b93f33 449 Pfam PF09594 Protein of unknown function (DUF2029) 98 340 9.9E-42 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 19 349 4.6E-145 T 19-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 Pfam PF00682 HMGL-like 20 277 1.9E-55 T 19-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 289 347 9.0E-16 T 19-04-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 SUPERFAMILY SSF51569 17 287 3.66E-64 T 19-04-2016 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 351 165.496 T 19-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 Gene3D G3DSA:1.10.8.60 289 350 6.9E-29 T 19-04-2016 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 SUPERFAMILY SSF89000 302 350 1.45E-15 T 19-04-2016 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 Pfam PF07836 DmpG-like communication domain 287 348 2.8E-29 T 19-04-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 Gene3D G3DSA:3.20.20.70 16 277 3.4E-53 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 PANTHER PTHR10277:SF3 19 280 5.3E-103 T 19-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AMED_4220 79563576590fa0b75dac545f3e7a970b 351 PANTHER PTHR10277 19 280 5.3E-103 T 19-04-2016 AMED_8545 6e5321c7538f7936a8f48b3dc3cac8f9 321 Pfam PF13379 NMT1-like family 35 258 5.6E-14 T 19-04-2016 AMED_8545 6e5321c7538f7936a8f48b3dc3cac8f9 321 Gene3D G3DSA:3.40.190.10 118 212 7.1E-10 T 19-04-2016 AMED_8545 6e5321c7538f7936a8f48b3dc3cac8f9 321 SUPERFAMILY SSF53850 38 311 1.04E-24 T 19-04-2016 AMED_8545 6e5321c7538f7936a8f48b3dc3cac8f9 321 PANTHER PTHR30024 1 299 5.1E-15 T 19-04-2016 AMED_9357 191356731ee8db2372f20cacdaf74176 445 PANTHER PTHR11751 36 421 1.6E-114 T 19-04-2016 AMED_9357 191356731ee8db2372f20cacdaf74176 445 Pfam PF00155 Aminotransferase class I and II 77 412 5.8E-35 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_9357 191356731ee8db2372f20cacdaf74176 445 PANTHER PTHR11751:SF294 36 421 1.6E-114 T 19-04-2016 AMED_9357 191356731ee8db2372f20cacdaf74176 445 SUPERFAMILY SSF53383 29 417 3.4E-107 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_9357 191356731ee8db2372f20cacdaf74176 445 Gene3D G3DSA:3.40.640.10 81 298 7.0E-75 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_9357 191356731ee8db2372f20cacdaf74176 445 Gene3D G3DSA:3.90.1150.10 299 418 7.2E-15 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2650 29a01a7c92d206fa1c864b5d45d1d0dc 304 TIGRFAM TIGR04222 near_uncomplex: TIGR04222 domain 16 219 1.1E-32 T 19-04-2016 IPR026467 Ser/Gly rich, Cys interspersed, C-terminal domain AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 SUPERFAMILY SSF56176 17 183 3.74E-27 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 PANTHER PTHR10801:SF4 40 468 3.9E-169 T 19-04-2016 AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 Gene3D G3DSA:3.30.465.10 69 175 1.7E-13 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 SUPERFAMILY SSF55103 264 456 3.71E-7 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 SUPERFAMILY SSF55103 162 199 3.71E-7 T 19-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 Pfam PF01565 FAD binding domain 47 149 4.9E-13 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMED_4519 f2b79cec04e7b0d014c00479cef74614 468 PANTHER PTHR10801 40 468 3.9E-169 T 19-04-2016 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 SUPERFAMILY SSF52540 32 342 1.83E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 138 147 - T 19-04-2016 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 16 351 5.0E-104 T 19-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 Pfam PF00270 DEAD/DEAH box helicase 25 184 3.3E-14 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 SMART SM00490 249 330 2.5E-27 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 PANTHER PTHR13710 425 484 1.6E-150 T 19-04-2016 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 PANTHER PTHR13710 1 349 1.6E-150 T 19-04-2016 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 Pfam PF00271 Helicase conserved C-terminal domain 239 330 2.4E-18 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 Gene3D G3DSA:3.40.50.300 8 203 3.2E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 Gene3D G3DSA:1.10.10.10 435 482 3.0E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 PANTHER PTHR13710:SF81 425 484 1.6E-150 T 19-04-2016 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 PANTHER PTHR13710:SF81 1 349 1.6E-150 T 19-04-2016 AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 Pfam PF16124 RecQ zinc-binding 429 475 6.1E-12 T 19-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 SMART SM00487 18 216 3.5E-24 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_4191 ec5c9315d4e6b66c5751162dc0a4b713 540 Gene3D G3DSA:3.40.50.300 204 346 5.1E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8175 b54be4a615e28a475cd38da61ca641e1 280 SUPERFAMILY SSF55486 150 277 1.01E-10 T 19-04-2016 AMED_8175 b54be4a615e28a475cd38da61ca641e1 280 Pfam PF05572 Pregnancy-associated plasma protein-A 205 257 6.6E-5 T 19-04-2016 IPR008754 Peptidase M43, pregnancy-associated plasma-A Reactome: REACT_15380 AMED_8175 b54be4a615e28a475cd38da61ca641e1 280 Gene3D G3DSA:3.40.390.10 188 258 7.8E-8 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 Gene3D G3DSA:3.30.465.10 56 103 4.7E-28 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 Gene3D G3DSA:3.30.465.10 147 208 4.7E-28 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 SMART SM01092 216 314 3.6E-29 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 Gene3D G3DSA:3.30.390.50 215 315 5.4E-34 T 19-04-2016 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 PANTHER PTHR11908 1 109 2.2E-94 T 19-04-2016 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 PANTHER PTHR11908 152 316 2.2E-94 T 19-04-2016 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 Gene3D G3DSA:3.30.43.10 1 46 3.6E-13 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 217 313 2.1E-17 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 PANTHER PTHR11908:SF97 1 109 2.2E-94 T 19-04-2016 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 PANTHER PTHR11908:SF97 152 316 2.2E-94 T 19-04-2016 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 SUPERFAMILY SSF55447 216 315 2.09E-28 T 19-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 SUPERFAMILY SSF56176 1 209 2.56E-53 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_3040 035d2d8f44ad06e5625aa28c710d26d3 320 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 209 1.1E-39 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 Gene3D G3DSA:2.40.50.100 177 204 1.6E-9 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 Gene3D G3DSA:2.40.50.100 74 100 1.6E-9 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 PANTHER PTHR32347:SF16 227 387 1.4E-40 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 PANTHER PTHR32347:SF16 5 192 1.4E-40 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 Pfam PF13437 HlyD family secretion protein 236 316 1.3E-7 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 Pfam PF13533 Biotin-lipoyl like 75 115 3.6E-9 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 SUPERFAMILY SSF111369 73 197 2.75E-9 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 PANTHER PTHR32347 227 387 1.4E-40 T 19-04-2016 AMED_0489 73332b65a3fc57d99297f0756c09a908 438 PANTHER PTHR32347 5 192 1.4E-40 T 19-04-2016 AMED_8815 ff21e07e7f007af3e413b36924cf947e 165 Pfam PF00156 Phosphoribosyl transferase domain 13 151 7.8E-18 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_8815 ff21e07e7f007af3e413b36924cf947e 165 SUPERFAMILY SSF53271 8 150 2.15E-25 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8815 ff21e07e7f007af3e413b36924cf947e 165 Gene3D G3DSA:3.40.50.2020 8 153 6.2E-32 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8815 ff21e07e7f007af3e413b36924cf947e 165 PANTHER PTHR22573:SF51 9 149 5.5E-18 T 19-04-2016 AMED_8815 ff21e07e7f007af3e413b36924cf947e 165 PANTHER PTHR22573 9 149 5.5E-18 T 19-04-2016 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 SUPERFAMILY SSF103473 9 392 1.02E-32 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4172 5f2d73736b82a84700e2062e368f07da 402 Pfam PF07690 Major Facilitator Superfamily 36 362 5.1E-21 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 139 161 7.9E-6 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 83 107 7.9E-6 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 346 369 7.9E-6 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 PRINTS PR01035 Tetracycline resistance protein signature 167 187 7.9E-6 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 PANTHER PTHR23517 15 400 9.7E-21 T 19-04-2016 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 Gene3D G3DSA:1.20.1250.20 210 390 8.9E-6 T 19-04-2016 AMED_4172 5f2d73736b82a84700e2062e368f07da 402 Gene3D G3DSA:1.20.1250.20 16 193 1.2E-17 T 19-04-2016 AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 PRINTS PR00155 Amicyanin family signature 158 173 1.5E-7 T 19-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 PRINTS PR00155 Amicyanin family signature 142 157 1.5E-7 T 19-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 PRINTS PR00155 Amicyanin family signature 102 121 1.5E-7 T 19-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 PANTHER PTHR36507:SF1 84 175 3.9E-24 T 19-04-2016 AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 SUPERFAMILY SSF49503 80 173 2.1E-26 T 19-04-2016 IPR008972 Cupredoxin AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 95 173 3.0E-13 T 19-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 Gene3D G3DSA:2.60.40.420 83 174 3.1E-28 T 19-04-2016 IPR008972 Cupredoxin AMED_4250 5bbc3e6d627560564c5d5daa52c06f35 328 PANTHER PTHR36507 84 175 3.9E-24 T 19-04-2016 AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 Pfam PF00106 short chain dehydrogenase 11 195 9.7E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 SUPERFAMILY SSF51735 8 256 1.99E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PIRSF PIRSF000126 1 265 4.3E-59 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 Gene3D G3DSA:3.40.50.720 9 256 2.0E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PANTHER PTHR24322:SF418 157 188 4.8E-30 T 19-04-2016 AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PANTHER PTHR24322:SF418 14 141 4.8E-30 T 19-04-2016 AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PANTHER PTHR24322 157 188 4.8E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PANTHER PTHR24322 14 141 4.8E-30 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.4E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3565 cc8d93828d2e797c2b6407c79be74ac6 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-15 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4893 cf85552c22556b931915b326009ef93e 264 Hamap MF_00289_B Proteasome subunit alpha [prcA]. 1 251 48.602 T 19-04-2016 IPR022296 Proteasome, alpha subunit, bacterial GO:0004298|GO:0019773|GO:0051603 UniPathway: UPA00997 AMED_4893 cf85552c22556b931915b326009ef93e 264 Pfam PF00227 Proteasome subunit 25 188 2.7E-29 T 19-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 AMED_4893 cf85552c22556b931915b326009ef93e 264 PANTHER PTHR11599:SF38 10 187 7.0E-27 T 19-04-2016 AMED_4893 cf85552c22556b931915b326009ef93e 264 PANTHER PTHR11599 210 255 7.0E-27 T 19-04-2016 AMED_4893 cf85552c22556b931915b326009ef93e 264 PANTHER PTHR11599:SF38 210 255 7.0E-27 T 19-04-2016 AMED_4893 cf85552c22556b931915b326009ef93e 264 Gene3D G3DSA:3.60.20.10 2 258 1.1E-83 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_4893 cf85552c22556b931915b326009ef93e 264 PANTHER PTHR11599 10 187 7.0E-27 T 19-04-2016 AMED_4893 cf85552c22556b931915b326009ef93e 264 TIGRFAM TIGR03691 20S_bact_alpha: proteasome, alpha subunit 2 247 2.6E-105 T 19-04-2016 IPR022296 Proteasome, alpha subunit, bacterial GO:0004298|GO:0019773|GO:0051603 UniPathway: UPA00997 AMED_4893 cf85552c22556b931915b326009ef93e 264 SUPERFAMILY SSF56235 10 246 1.71E-39 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6878 7598b1ba0e21ed4bee71892d03ae0505 127 Gene3D G3DSA:3.30.70.1060 2 119 9.8E-36 T 19-04-2016 AMED_6878 7598b1ba0e21ed4bee71892d03ae0505 127 Pfam PF03795 YCII-related domain 2 116 3.6E-14 T 19-04-2016 IPR005545 YCII-related AMED_6878 7598b1ba0e21ed4bee71892d03ae0505 127 PANTHER PTHR35174 2 125 5.6E-28 T 19-04-2016 AMED_6878 7598b1ba0e21ed4bee71892d03ae0505 127 SUPERFAMILY SSF54909 2 117 5.63E-29 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2613 35bd33f232c70f4609531968019b3e7e 221 Gene3D G3DSA:3.40.50.720 2 140 2.3E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2613 35bd33f232c70f4609531968019b3e7e 221 PANTHER PTHR16254 1 158 4.4E-84 T 19-04-2016 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 SUPERFAMILY SSF51735 2 139 1.08E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2613 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 6.3E-7 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 6.3E-7 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 6.3E-7 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 6.3E-7 T 19-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 Pfam PF02254 TrkA-N domain 3 116 4.7E-22 T 19-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 Gene3D G3DSA:3.30.70.1450 149 209 2.8E-5 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 SUPERFAMILY SSF116726 142 212 2.62E-7 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 Pfam PF02080 TrkA-C domain 155 211 9.6E-8 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_2613 35bd33f232c70f4609531968019b3e7e 221 PANTHER PTHR16254:SF23 1 158 4.4E-84 T 19-04-2016 AMED_7261 57a1055444859246966d28c61491adab 263 Gene3D G3DSA:3.40.50.1820 21 259 7.7E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7261 57a1055444859246966d28c61491adab 263 PANTHER PTHR10992 21 261 8.1E-38 T 19-04-2016 AMED_7261 57a1055444859246966d28c61491adab 263 SUPERFAMILY SSF53474 18 259 1.63E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7261 57a1055444859246966d28c61491adab 263 Pfam PF12697 Alpha/beta hydrolase family 26 253 2.3E-16 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7264 3b4422b654973eb800768dba93a123c4 725 Pfam PF08532 Beta-galactosidase trimerisation domain 388 499 6.5E-10 T 19-04-2016 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_7264 3b4422b654973eb800768dba93a123c4 725 Gene3D G3DSA:3.40.50.880 388 601 1.1E-8 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7264 3b4422b654973eb800768dba93a123c4 725 Gene3D G3DSA:3.20.20.80 76 346 6.6E-8 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7264 3b4422b654973eb800768dba93a123c4 725 Pfam PF14871 Hypothetical glycosyl hydrolase 6 40 173 4.2E-15 T 19-04-2016 IPR028212 Hypothetical glycosyl hydrolase 6 AMED_7264 3b4422b654973eb800768dba93a123c4 725 SUPERFAMILY SSF51445 27 175 5.69E-5 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7264 3b4422b654973eb800768dba93a123c4 725 SUPERFAMILY SSF52317 388 522 7.63E-8 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_0237 6aa5435bd0375c19d50a3d6674d0854c 497 SUPERFAMILY SSF140453 109 165 9.02E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_6936 0e615ce6a62b1d78a385a2b1728428b1 134 Pfam PF04075 Domain of unknown function (DUF385) 6 132 3.1E-46 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_6936 0e615ce6a62b1d78a385a2b1728428b1 134 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 22 132 8.8E-32 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_6936 0e615ce6a62b1d78a385a2b1728428b1 134 PANTHER PTHR39428:SF1 3 134 1.6E-44 T 19-04-2016 AMED_6936 0e615ce6a62b1d78a385a2b1728428b1 134 PANTHER PTHR39428 3 134 1.6E-44 T 19-04-2016 AMED_3594 5ace453833378541c842a911e144482e 202 Gene3D G3DSA:1.10.10.60 5 56 7.9E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3594 5ace453833378541c842a911e144482e 202 PANTHER PTHR30055:SF54 2 188 7.7E-44 T 19-04-2016 AMED_3594 5ace453833378541c842a911e144482e 202 SUPERFAMILY SSF46689 5 77 9.23E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3594 5ace453833378541c842a911e144482e 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 1.2E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3594 5ace453833378541c842a911e144482e 202 Gene3D G3DSA:1.10.357.10 58 188 3.9E-16 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3594 5ace453833378541c842a911e144482e 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 8.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3594 5ace453833378541c842a911e144482e 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 8.0E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3594 5ace453833378541c842a911e144482e 202 PANTHER PTHR30055 2 188 7.7E-44 T 19-04-2016 AMED_0837 d7bf2b47d79e80bdca80d2a2cc9d2612 252 Pfam PF12706 Beta-lactamase superfamily domain 54 220 2.9E-23 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0837 d7bf2b47d79e80bdca80d2a2cc9d2612 252 SMART SM00849 23 219 1.3E-6 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0837 d7bf2b47d79e80bdca80d2a2cc9d2612 252 PANTHER PTHR12553 7 246 5.3E-37 T 19-04-2016 AMED_0837 d7bf2b47d79e80bdca80d2a2cc9d2612 252 SUPERFAMILY SSF56281 7 251 3.54E-45 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0837 d7bf2b47d79e80bdca80d2a2cc9d2612 252 Gene3D G3DSA:3.60.15.10 7 247 1.3E-49 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5209 319b1bc320aaacfa058f19556635d99a 121 Pfam PF13466 STAS domain 26 106 6.4E-12 T 19-04-2016 IPR002645 STAS domain AMED_5209 319b1bc320aaacfa058f19556635d99a 121 Gene3D G3DSA:3.30.750.24 22 113 4.2E-16 T 19-04-2016 IPR002645 STAS domain AMED_5209 319b1bc320aaacfa058f19556635d99a 121 SUPERFAMILY SSF52091 19 113 7.46E-15 T 19-04-2016 IPR002645 STAS domain AMED_5209 319b1bc320aaacfa058f19556635d99a 121 PANTHER PTHR33495 1 113 6.8E-16 T 19-04-2016 AMED_5209 319b1bc320aaacfa058f19556635d99a 121 PANTHER PTHR33495:SF2 1 113 6.8E-16 T 19-04-2016 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 Gene3D G3DSA:3.20.20.80 369 404 1.3E-88 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 Gene3D G3DSA:3.20.20.80 32 305 1.3E-88 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 Gene3D G3DSA:3.10.50.10 306 364 2.2E-24 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 ProSitePatterns PS01095 Chitinases family 18 active site. 174 182 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 PANTHER PTHR11177 117 404 5.7E-85 T 19-04-2016 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 PANTHER PTHR11177 41 94 5.7E-85 T 19-04-2016 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 SUPERFAMILY SSF54556 304 363 1.3E-13 T 19-04-2016 IPR029070 Chitinase insertion domain AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 SMART SM00636 40 392 9.2E-115 T 19-04-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 SUPERFAMILY SSF51445 39 302 7.24E-86 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 SUPERFAMILY SSF51445 362 399 7.24E-86 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2467 2a21d668565aa705a62c8ffd503ab479 404 Pfam PF00704 Glycosyl hydrolases family 18 41 392 6.0E-76 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 Pfam PF04542 Sigma-70 region 2 11 68 9.2E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 SUPERFAMILY SSF88946 8 89 2.2E-9 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 Gene3D G3DSA:1.10.10.10 99 160 1.3E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7508 463eb7250899864df0931bf585f4ea4f 164 SUPERFAMILY SSF88659 78 161 3.55E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 PANTHER PTHR30173:SF3 8 158 4.9E-40 T 19-04-2016 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 Gene3D G3DSA:1.10.1740.10 8 97 1.0E-11 T 19-04-2016 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 159 1.8E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 Pfam PF08281 Sigma-70, region 4 105 157 2.4E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7508 463eb7250899864df0931bf585f4ea4f 164 PANTHER PTHR30173 8 158 4.9E-40 T 19-04-2016 AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 Pfam PF00005 ABC transporter 18 162 3.9E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 PANTHER PTHR24220 3 220 7.1E-97 T 19-04-2016 AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 SMART SM00382 26 233 2.3E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 SUPERFAMILY SSF52540 2 225 1.46E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 Gene3D G3DSA:3.40.50.300 2 223 2.0E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1356 f715dba12c5088d5440949c4124aa0c4 303 PANTHER PTHR24220:SF522 3 220 7.1E-97 T 19-04-2016 AMED_0310 670b105859857aa08ba1b9a297ca4544 317 PANTHER PTHR21363:SF0 1 285 1.7E-46 T 19-04-2016 AMED_0310 670b105859857aa08ba1b9a297ca4544 317 SUPERFAMILY SSF51735 1 162 1.19E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0310 670b105859857aa08ba1b9a297ca4544 317 Gene3D G3DSA:3.40.50.720 1 172 2.2E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0310 670b105859857aa08ba1b9a297ca4544 317 PANTHER PTHR21363 1 285 1.7E-46 T 19-04-2016 AMED_0310 670b105859857aa08ba1b9a297ca4544 317 Pfam PF02153 Prephenate dehydrogenase 27 240 2.1E-47 T 19-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AMED_0310 670b105859857aa08ba1b9a297ca4544 317 SUPERFAMILY SSF48179 167 252 5.1E-21 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_2831 542b4ee2ec03a4eac368177ac54eb778 390 PANTHER PTHR30508 96 387 2.0E-90 T 19-04-2016 AMED_2831 542b4ee2ec03a4eac368177ac54eb778 390 Pfam PF01458 Uncharacterized protein family (UPF0051) 141 360 1.6E-73 T 19-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AMED_2831 542b4ee2ec03a4eac368177ac54eb778 390 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 106 377 2.6E-80 T 19-04-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 AMED_2831 542b4ee2ec03a4eac368177ac54eb778 390 PANTHER PTHR30508:SF0 96 387 2.0E-90 T 19-04-2016 AMED_2831 542b4ee2ec03a4eac368177ac54eb778 390 SUPERFAMILY SSF101960 32 386 2.09E-90 T 19-04-2016 AMED_6995 7cb4679daa48f0da4bd9e791d48e7bbe 570 PANTHER PTHR21000:SF2 2 570 0.0 T 19-04-2016 AMED_6995 7cb4679daa48f0da4bd9e791d48e7bbe 570 PANTHER PTHR21000 2 570 0.0 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_6995 7cb4679daa48f0da4bd9e791d48e7bbe 570 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_6995 7cb4679daa48f0da4bd9e791d48e7bbe 570 Pfam PF00920 Dehydratase family 40 553 1.9E-176 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_6995 7cb4679daa48f0da4bd9e791d48e7bbe 570 SUPERFAMILY SSF52016 375 558 2.2E-59 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_6995 7cb4679daa48f0da4bd9e791d48e7bbe 570 SUPERFAMILY SSF143975 2 374 1.06E-123 T 19-04-2016 AMED_0328 e05040e3c0fa8027325e6a4869fa3f4a 439 Pfam PF13641 Glycosyltransferase like family 2 34 283 1.6E-22 T 19-04-2016 AMED_0328 e05040e3c0fa8027325e6a4869fa3f4a 439 Gene3D G3DSA:3.90.550.10 37 289 4.1E-11 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0328 e05040e3c0fa8027325e6a4869fa3f4a 439 SUPERFAMILY SSF53448 34 320 3.38E-24 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_3431 eec35fef8e4c7a2a4d6af81c4be0de9a 212 PANTHER PTHR31462:SF4 2 141 1.9E-27 T 19-04-2016 AMED_3431 eec35fef8e4c7a2a4d6af81c4be0de9a 212 Pfam PF06736 Protein of unknown function (DUF1211) 9 100 8.0E-25 T 19-04-2016 IPR010617 Endosomal/lysomomal potassium channel TMEM175 GO:0005267 AMED_3431 eec35fef8e4c7a2a4d6af81c4be0de9a 212 PANTHER PTHR31462 2 141 1.9E-27 T 19-04-2016 AMED_4053 de7955acf1132242911e9619930cf070 218 SMART SM00862 144 216 7.1E-22 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4053 de7955acf1132242911e9619930cf070 218 PANTHER PTHR26402:SF553 1 217 2.0E-85 T 19-04-2016 AMED_4053 de7955acf1132242911e9619930cf070 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 2.4E-20 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4053 de7955acf1132242911e9619930cf070 218 Gene3D G3DSA:3.40.50.2300 2 119 4.4E-32 T 19-04-2016 AMED_4053 de7955acf1132242911e9619930cf070 218 SMART SM00448 1 111 4.4E-35 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4053 de7955acf1132242911e9619930cf070 218 Gene3D G3DSA:1.10.10.10 121 217 4.7E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4053 de7955acf1132242911e9619930cf070 218 SUPERFAMILY SSF52172 2 175 2.72E-33 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4053 de7955acf1132242911e9619930cf070 218 PANTHER PTHR26402 1 217 2.0E-85 T 19-04-2016 AMED_4053 de7955acf1132242911e9619930cf070 218 Pfam PF00072 Response regulator receiver domain 3 112 6.3E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_2493 cf8014bf7261939452f0044dba18bc4f 142 Pfam PF05331 Protein of unknown function (DUF742) 27 142 1.3E-29 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_2493 cf8014bf7261939452f0044dba18bc4f 142 PANTHER PTHR36221 4 142 7.7E-28 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 Gene3D G3DSA:3.30.70.20 171 202 2.7E-13 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 Pfam PF13247 4Fe-4S dicluster domain 158 253 2.3E-25 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 Gene3D G3DSA:3.30.70.20 203 238 1.0E-15 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 Gene3D G3DSA:3.30.70.20 239 283 2.4E-35 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 Gene3D G3DSA:3.30.70.20 152 170 2.4E-35 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 Gene3D G3DSA:3.30.70.20 26 81 2.4E-35 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 PANTHER PTHR11938:SF88 137 266 3.5E-41 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 PANTHER PTHR11938:SF88 26 51 3.5E-41 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 SUPERFAMILY SSF54862 147 271 1.57E-54 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 SUPERFAMILY SSF54862 27 77 1.57E-54 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 PANTHER PTHR11938 137 266 3.5E-41 T 19-04-2016 AMED_3203 88d6458505c75b9aaffdfff1634cd0c5 346 PANTHER PTHR11938 26 51 3.5E-41 T 19-04-2016 AMED_6928 90a087fe9a41f2ee68c744cf8472bba0 481 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 349 1.9E-35 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_6928 90a087fe9a41f2ee68c744cf8472bba0 481 Gene3D G3DSA:3.40.190.10 181 275 7.3E-12 T 19-04-2016 AMED_6928 90a087fe9a41f2ee68c744cf8472bba0 481 SUPERFAMILY SSF53850 31 473 6.15E-59 T 19-04-2016 AMED_6928 90a087fe9a41f2ee68c744cf8472bba0 481 Gene3D G3DSA:3.10.105.10 276 450 4.2E-13 T 19-04-2016 AMED_6928 90a087fe9a41f2ee68c744cf8472bba0 481 Gene3D G3DSA:3.90.76.10 34 180 8.3E-24 T 19-04-2016 AMED_6928 90a087fe9a41f2ee68c744cf8472bba0 481 PANTHER PTHR30290 1 478 1.1E-40 T 19-04-2016 AMED_2212 c7c9abdf7df6a5a0513f4ee555ebaa08 133 Gene3D G3DSA:3.30.530.20 6 132 2.3E-15 T 19-04-2016 IPR023393 START-like domain AMED_2212 c7c9abdf7df6a5a0513f4ee555ebaa08 133 SUPERFAMILY SSF55961 8 131 3.76E-21 T 19-04-2016 AMED_2212 c7c9abdf7df6a5a0513f4ee555ebaa08 133 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 19 130 8.0E-11 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 253 275 1.8E-11 T 19-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 Gene3D G3DSA:3.40.50.300 27 275 3.3E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 Pfam PF00005 ABC transporter 43 203 2.0E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 PANTHER PTHR24220:SF519 150 277 3.8E-116 T 19-04-2016 AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 PANTHER PTHR24220:SF519 29 134 3.8E-116 T 19-04-2016 AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 SUPERFAMILY SSF52540 28 275 4.8E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 SMART SM00382 52 253 1.7E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 PANTHER PTHR24220 150 277 3.8E-116 T 19-04-2016 AMED_7028 ae62a40ffaf13e2c67d45481bfa36b5f 279 PANTHER PTHR24220 29 134 3.8E-116 T 19-04-2016 AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 Pfam PF01804 Penicillin amidase 36 773 5.8E-125 T 19-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 SUPERFAMILY SSF56235 226 783 7.2E-143 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 SUPERFAMILY SSF56235 31 196 7.2E-143 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 PANTHER PTHR34218 15 785 5.8E-160 T 19-04-2016 AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:3.60.20.10 174 308 1.1E-71 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:3.60.20.10 392 615 1.1E-71 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:1.10.439.10 32 173 1.2E-29 T 19-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 PANTHER PTHR34218:SF3 15 785 5.8E-160 T 19-04-2016 AMED_6716 cb97414c0b0b5f307ae0321e72918b28 785 Gene3D G3DSA:2.30.120.10 309 369 4.0E-16 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 PANTHER PTHR37842 38 282 2.1E-264 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 Gene3D G3DSA:3.30.379.10 45 162 7.3E-22 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 PANTHER PTHR37842:SF2 561 1007 2.1E-264 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 PANTHER PTHR37842:SF2 38 282 2.1E-264 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 PANTHER PTHR37842:SF2 304 544 2.1E-264 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 SUPERFAMILY SSF55545 45 160 5.75E-6 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 PANTHER PTHR37842 561 1007 2.1E-264 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 PANTHER PTHR37842 304 544 2.1E-264 T 19-04-2016 AMED_4512 6ca8015227b8122df598e3ae4d9d8801 1010 Pfam PF15979 Glycosyl hydrolase family 115 179 543 6.9E-128 T 19-04-2016 IPR031924 Glycosyl hydrolase family 115 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PANTHER PTHR22773:SF40 1 513 1.2E-161 T 19-04-2016 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PANTHER PTHR22773 1 513 1.2E-161 T 19-04-2016 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 6 511 4.9E-160 T 19-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 384 410 2.2E-28 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 2.2E-28 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 244 268 2.2E-28 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 137 156 2.2E-28 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 332 351 2.2E-28 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMED_0532 faa0259ef7549b15d679bb27c1d7e83a 516 Pfam PF00361 Proton-conducting membrane transporter 131 426 4.5E-58 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 PIRSF PIRSF016578 1 390 2.8E-124 T 19-04-2016 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 Gene3D G3DSA:2.40.110.10 109 201 3.5E-27 T 19-04-2016 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 Gene3D G3DSA:1.20.140.10 202 389 1.7E-49 T 19-04-2016 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 SUPERFAMILY SSF56645 6 206 1.2E-26 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 PANTHER PTHR10909 11 364 3.6E-64 T 19-04-2016 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 Gene3D G3DSA:1.10.540.10 3 107 1.3E-33 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 PANTHER PTHR10909:SF275 11 364 3.6E-64 T 19-04-2016 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 SUPERFAMILY SSF47203 232 380 1.16E-14 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_7186 62660dff1ff3fbfa05e11e848157e7ef 393 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 237 368 8.2E-34 T 19-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 Gene3D G3DSA:3.20.20.100 3 317 2.0E-115 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 PRINTS PR00069 Aldo-keto reductase signature 136 153 7.7E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 PRINTS PR00069 Aldo-keto reductase signature 41 65 7.7E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 PRINTS PR00069 Aldo-keto reductase signature 105 123 7.7E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 PANTHER PTHR11732:SF225 1 317 3.2E-146 T 19-04-2016 AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 Pfam PF00248 Aldo/keto reductase family 16 304 2.6E-76 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 PANTHER PTHR11732 1 317 3.2E-146 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_0891 4dc1dd34c9b06bd32c72dca00ff33f77 325 SUPERFAMILY SSF51430 7 304 1.11E-99 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_6817 7d15952565630c105f9b611d23d21d0d 162 Pfam PF17174 Domain of unknown function (DUF5130) 15 146 2.0E-37 T 19-04-2016 IPR033437 Protein of unknown function DUF5130 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 Gene3D G3DSA:3.30.420.40 89 232 1.1E-26 T 19-04-2016 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 PANTHER PTHR18964:SF123 68 404 2.3E-62 T 19-04-2016 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 SUPERFAMILY SSF53067 90 398 4.8E-46 T 19-04-2016 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 SUPERFAMILY SSF46785 21 77 2.21E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 Pfam PF00480 ROK family 93 396 6.6E-49 T 19-04-2016 IPR000600 ROK family AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 Gene3D G3DSA:3.30.420.40 233 372 4.9E-44 T 19-04-2016 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 Pfam PF13412 Winged helix-turn-helix DNA-binding 24 68 1.4E-9 T 19-04-2016 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 PANTHER PTHR18964 68 404 2.3E-62 T 19-04-2016 AMED_6925 2cf443e096c83072c8731585e2f7ebe9 406 Gene3D G3DSA:1.10.10.10 22 82 1.1E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4614 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 PANTHER PTHR33204:SF10 6 133 1.2E-52 T 19-04-2016 AMED_4614 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 Pfam PF01638 HxlR-like helix-turn-helix 16 103 2.5E-24 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_4614 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 Gene3D G3DSA:1.10.10.10 6 103 1.0E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4614 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 SUPERFAMILY SSF46785 6 137 4.42E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4614 f3fb6a5ab5cb42b04f4d3f6074ac603d 146 PANTHER PTHR33204 6 133 1.2E-52 T 19-04-2016 AMED_8326 a925d290b36a1f73bf69e2511845ddf4 210 SUPERFAMILY SSF53335 56 204 1.52E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8326 a925d290b36a1f73bf69e2511845ddf4 210 Gene3D G3DSA:3.40.50.150 53 194 3.0E-14 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1380 f3baf57e88e3c43448ef81bd0f233d96 356 PANTHER PTHR30482 1 345 2.4E-61 T 19-04-2016 AMED_1380 f3baf57e88e3c43448ef81bd0f233d96 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 325 7.4E-42 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_5262 dc3a62b499a4b0472ff5ccfcad397e76 160 Pfam PF00583 Acetyltransferase (GNAT) family 52 133 9.4E-18 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_5262 dc3a62b499a4b0472ff5ccfcad397e76 160 Gene3D G3DSA:3.40.630.30 2 159 2.6E-36 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5262 dc3a62b499a4b0472ff5ccfcad397e76 160 SUPERFAMILY SSF55729 2 158 4.46E-36 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5262 dc3a62b499a4b0472ff5ccfcad397e76 160 PANTHER PTHR23091 2 159 1.8E-29 T 19-04-2016 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PANTHER PTHR11732 5 286 2.5E-130 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 150 167 1.1E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 183 212 1.1E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 48 72 1.1E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 220 244 1.1E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PRINTS PR00069 Aldo-keto reductase signature 113 131 1.1E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 PANTHER PTHR11732:SF136 5 286 2.5E-130 T 19-04-2016 AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 Gene3D G3DSA:3.20.20.100 13 287 2.0E-63 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 Pfam PF00248 Aldo/keto reductase family 18 286 3.0E-51 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_8126 bdb588e65287e90b86b3ce86ad00f7c8 289 SUPERFAMILY SSF51430 8 286 2.49E-65 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 SMART SM00895 101 228 1.9E-16 T 19-04-2016 IPR011711 GntR, C-terminal AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 Gene3D G3DSA:1.20.120.530 99 228 2.4E-20 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 SMART SM00345 15 76 6.6E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 SUPERFAMILY SSF48008 99 231 2.88E-20 T 19-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 1.2E-20 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 5.7E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 5.7E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 SUPERFAMILY SSF46785 5 84 4.72E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 Gene3D G3DSA:1.10.10.10 2 69 1.6E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 Pfam PF07729 FCD domain 101 224 2.1E-19 T 19-04-2016 IPR011711 GntR, C-terminal AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 PANTHER PTHR11751 12 78 1.8E-16 T 19-04-2016 AMED_0066 d592f21ead4c62c481efb0974ee12de7 247 PANTHER PTHR11751 204 222 1.8E-16 T 19-04-2016 AMED_7968 8e4f8c859aa84fd011c72c27240c80f5 160 Gene3D G3DSA:3.40.630.30 5 157 8.3E-51 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7968 8e4f8c859aa84fd011c72c27240c80f5 160 Pfam PF00583 Acetyltransferase (GNAT) family 57 136 1.7E-14 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7968 8e4f8c859aa84fd011c72c27240c80f5 160 SUPERFAMILY SSF55729 5 148 1.58E-34 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7968 8e4f8c859aa84fd011c72c27240c80f5 160 PANTHER PTHR10545 5 160 2.9E-53 T 19-04-2016 AMED_5461 3f5318e7e905e11d7dfa0088fbdb4578 198 Pfam PF07681 DoxX 36 137 6.5E-7 T 19-04-2016 IPR032808 DoxX family AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 PANTHER PTHR24423 401 649 1.2E-40 T 19-04-2016 AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 Gene3D G3DSA:3.30.565.10 500 646 6.5E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 PANTHER PTHR24423:SF523 401 649 1.2E-40 T 19-04-2016 AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 SUPERFAMILY SSF55874 520 645 2.46E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 Pfam PF00672 HAMP domain 329 415 8.5E-8 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 539 643 4.9E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 Pfam PF08376 Nitrate and nitrite sensing 71 308 8.3E-30 T 19-04-2016 IPR013587 Nitrate/nitrite sensing protein AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 SMART SM00387 534 646 2.5E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 PANTHER PTHR24423 701 764 1.2E-40 T 19-04-2016 AMED_6401 4cfbd204b1cb8eeecd4dc2f217e06e3a 799 PANTHER PTHR24423:SF523 701 764 1.2E-40 T 19-04-2016 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 SMART SM00642 19 424 1.7E-111 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 Gene3D G3DSA:3.90.400.10 111 185 1.8E-29 T 19-04-2016 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 PANTHER PTHR10357 462 516 1.1E-145 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 PANTHER PTHR10357:SF11 462 516 1.1E-145 T 19-04-2016 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 PANTHER PTHR10357 3 429 1.1E-145 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 Pfam PF00128 Alpha amylase, catalytic domain 34 398 5.0E-74 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 Gene3D G3DSA:3.20.20.80 10 110 4.2E-102 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 Gene3D G3DSA:3.20.20.80 186 479 4.2E-102 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 PANTHER PTHR10357:SF11 3 429 1.1E-145 T 19-04-2016 AMED_3189 ba7f2fac37964ef7485ae46f31395b36 546 SUPERFAMILY SSF51445 11 480 2.18E-123 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 313 329 1.7E-11 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 122 137 1.7E-11 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 344 366 1.7E-11 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 181 194 1.7E-11 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PRINTS PR00412 Epoxide hydrolase signature 93 111 1.7E-11 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PIRSF PIRSF001112 1 371 4.8E-98 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 Gene3D G3DSA:3.40.50.1820 3 370 1.4E-119 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PANTHER PTHR21661 2 371 7.9E-90 T 19-04-2016 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 PANTHER PTHR21661:SF35 2 371 7.9E-90 T 19-04-2016 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 Pfam PF06441 Epoxide hydrolase N terminus 3 102 4.9E-26 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_6217 c8b002be5ea54818059bedf4ffb45067 371 SUPERFAMILY SSF53474 3 369 1.17E-86 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 SMART SM00267 201 379 4.1E-57 T 19-04-2016 IPR000160 GGDEF domain AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 375 4.6E-44 T 19-04-2016 IPR000160 GGDEF domain AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 Gene3D G3DSA:3.30.70.270 214 377 2.7E-51 T 19-04-2016 AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 PANTHER PTHR10799:SF750 247 376 3.8E-32 T 19-04-2016 AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 PANTHER PTHR10799 247 376 3.8E-32 T 19-04-2016 AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 208 378 4.0E-51 T 19-04-2016 IPR000160 GGDEF domain AMED_9105 6eb32f3ec00d9abf7430fe7cc5fc417b 387 SUPERFAMILY SSF55073 218 377 6.43E-46 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 SUPERFAMILY SSF48498 78 189 1.19E-14 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 Gene3D G3DSA:1.10.357.10 55 190 1.5E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 PANTHER PTHR30055:SF66 1 191 1.0E-21 T 19-04-2016 AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 Gene3D G3DSA:1.10.10.60 5 53 4.6E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 PANTHER PTHR30055 1 191 1.0E-21 T 19-04-2016 AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 3.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 Pfam PF16859 Bacterial transcriptional repressor C-terminal 75 184 1.1E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6430 89016e6562cf30d85df0126dcded2bc3 191 SUPERFAMILY SSF46689 4 67 7.18E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0300 49b3d09c99ffd2ec328219da7d1ad9ec 162 Gene3D G3DSA:1.10.10.10 10 90 1.5E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0300 49b3d09c99ffd2ec328219da7d1ad9ec 162 Pfam PF12802 MarR family 28 87 1.7E-11 T 19-04-2016 AMED_0300 49b3d09c99ffd2ec328219da7d1ad9ec 162 PANTHER PTHR38465 1 158 3.6E-12 T 19-04-2016 AMED_0300 49b3d09c99ffd2ec328219da7d1ad9ec 162 SUPERFAMILY SSF46785 11 148 1.03E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6485 c81310c325eaff6c029c11ab401721a7 94 Gene3D G3DSA:3.30.750.24 5 59 8.9E-7 T 19-04-2016 IPR002645 STAS domain AMED_6485 c81310c325eaff6c029c11ab401721a7 94 SUPERFAMILY SSF52091 4 77 5.3E-8 T 19-04-2016 IPR002645 STAS domain AMED_6485 c81310c325eaff6c029c11ab401721a7 94 Pfam PF13466 STAS domain 11 77 9.4E-8 T 19-04-2016 IPR002645 STAS domain AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 PANTHER PTHR12428 2 142 4.0E-44 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 PANTHER PTHR12428:SF14 2 142 4.0E-44 T 19-04-2016 AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 SUPERFAMILY SSF81665 204 252 6.93E-5 T 19-04-2016 AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 SUPERFAMILY SSF81665 12 70 6.93E-5 T 19-04-2016 AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 31 258 1.6E-55 T 19-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 PANTHER PTHR12428 177 267 4.0E-44 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 PANTHER PTHR12428:SF14 177 267 4.0E-44 T 19-04-2016 AMED_9364 ea92dc4c1bde10cc9af065f6a6ea1761 384 Pfam PF02096 60Kd inner membrane protein 32 259 2.6E-52 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMED_5684 1a5d98af2adb201b880f0b88bef5a086 125 Pfam PF01609 Transposase DDE domain 27 108 3.7E-10 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_1661 0f66be544743b65359eee058d6075f8c 363 PANTHER PTHR11933 1 359 6.7E-150 T 19-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 AMED_1661 0f66be544743b65359eee058d6075f8c 363 Gene3D G3DSA:2.40.30.10 281 361 6.7E-18 T 19-04-2016 AMED_1661 0f66be544743b65359eee058d6075f8c 363 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 1 360 36.564 T 19-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 AMED_1661 0f66be544743b65359eee058d6075f8c 363 Gene3D G3DSA:3.40.50.620 1 209 3.2E-78 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1661 0f66be544743b65359eee058d6075f8c 363 PANTHER PTHR11933:SF10 1 359 6.7E-150 T 19-04-2016 AMED_1661 0f66be544743b65359eee058d6075f8c 363 Pfam PF03054 tRNA methyl transferase 1 359 1.5E-115 T 19-04-2016 AMED_1661 0f66be544743b65359eee058d6075f8c 363 Gene3D G3DSA:2.30.30.280 212 272 1.3E-12 T 19-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 AMED_1661 0f66be544743b65359eee058d6075f8c 363 SUPERFAMILY SSF52402 1 243 3.97E-48 T 19-04-2016 AMED_1661 0f66be544743b65359eee058d6075f8c 363 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 359 2.8E-90 T 19-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 AMED_4279 48d325c74dcb7c61c2eae93fa270bf6f 402 Pfam PF00534 Glycosyl transferases group 1 213 368 2.8E-42 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_4279 48d325c74dcb7c61c2eae93fa270bf6f 402 PANTHER PTHR12526 1 395 3.3E-84 T 19-04-2016 AMED_4279 48d325c74dcb7c61c2eae93fa270bf6f 402 Pfam PF13439 Glycosyltransferase Family 4 21 197 3.0E-33 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_4279 48d325c74dcb7c61c2eae93fa270bf6f 402 Gene3D G3DSA:3.40.50.2000 211 367 7.6E-37 T 19-04-2016 AMED_4279 48d325c74dcb7c61c2eae93fa270bf6f 402 SUPERFAMILY SSF53756 1 391 6.57E-96 T 19-04-2016 AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 Gene3D G3DSA:3.20.20.140 49 318 1.6E-57 T 19-04-2016 AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 SUPERFAMILY SSF51556 47 321 8.81E-56 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 Gene3D G3DSA:2.30.40.10 39 48 2.1E-5 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 Gene3D G3DSA:2.30.40.10 320 357 2.1E-5 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 PANTHER PTHR11271:SF42 16 356 1.1E-73 T 19-04-2016 AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 PANTHER PTHR11271 16 356 1.1E-73 T 19-04-2016 AMED_1955 3f4b5e5712997aaa8ec35d0cf61e0885 358 Pfam PF01979 Amidohydrolase family 43 333 8.6E-12 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.6E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.6E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.6E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.6E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.6E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 242 2.2E-59 T 19-04-2016 AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PANTHER PTHR24322 10 137 8.8E-53 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PANTHER PTHR24322 154 186 8.8E-53 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 Gene3D G3DSA:3.40.50.720 1 242 3.1E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 5.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 5.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 4.6E-4 T 19-04-2016 AMED_9329 a96898fd76f17bd34633043ed9cfd108 245 SUPERFAMILY SSF51735 4 243 6.76E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 112 196 1.5E-18 T 19-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 PANTHER PTHR34069 1 335 5.4E-70 T 19-04-2016 AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 245 331 2.5E-18 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 Gene3D G3DSA:3.40.47.10 177 334 8.2E-30 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 PANTHER PTHR34069:SF2 1 335 5.4E-70 T 19-04-2016 AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 Gene3D G3DSA:3.40.47.10 1 176 4.0E-42 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4009 414b47d736a0dd84597c1c6524c16d19 336 SUPERFAMILY SSF53901 3 333 2.07E-46 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_1929 17c6f35d3d2111cc32a515d9b4c4dc57 158 Gene3D G3DSA:1.10.10.60 119 152 8.8E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1929 17c6f35d3d2111cc32a515d9b4c4dc57 158 PANTHER PTHR35568 88 156 1.9E-12 T 19-04-2016 AMED_1929 17c6f35d3d2111cc32a515d9b4c4dc57 158 Gene3D G3DSA:3.30.70.930 5 79 1.8E-5 T 19-04-2016 IPR029756 MTH1187/YkoF-like AMED_1929 17c6f35d3d2111cc32a515d9b4c4dc57 158 SUPERFAMILY SSF89957 4 80 2.35E-8 T 19-04-2016 IPR029756 MTH1187/YkoF-like AMED_1929 17c6f35d3d2111cc32a515d9b4c4dc57 158 Pfam PF13309 HTH domain 93 154 7.5E-18 T 19-04-2016 AMED_1929 17c6f35d3d2111cc32a515d9b4c4dc57 158 Pfam PF01910 Thiamine-binding protein 20 82 1.1E-5 T 19-04-2016 IPR002767 Thiamine-binding protein AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 136 3.3E-12 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 Gene3D G3DSA:3.90.180.10 6 187 3.7E-28 T 19-04-2016 IPR011032 GroES-like AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 SUPERFAMILY SSF51735 171 307 1.71E-11 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 Gene3D G3DSA:3.40.50.720 188 275 5.4E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 PANTHER PTHR11695:SF585 14 333 2.9E-45 T 19-04-2016 AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 Pfam PF16912 Glucose dehydrogenase C-terminus 143 346 2.6E-65 T 19-04-2016 IPR031640 Glucose dehydrogenase, C-terminal KEGG: 00030+1.1.1.47 AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 PANTHER PTHR11695 14 333 2.9E-45 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_1404 a2acefac9b8319022616baf9ed7f456b 350 SUPERFAMILY SSF50129 7 181 6.24E-30 T 19-04-2016 IPR011032 GroES-like AMED_1774 a3511bfea8100fc4078f9a0efc145be2 402 PANTHER PTHR33371:SF2 1 372 7.8E-104 T 19-04-2016 AMED_1774 a3511bfea8100fc4078f9a0efc145be2 402 PANTHER PTHR33371 1 372 7.8E-104 T 19-04-2016 AMED_1774 a3511bfea8100fc4078f9a0efc145be2 402 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 297 1.6E-53 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1774 a3511bfea8100fc4078f9a0efc145be2 402 Pfam PF02470 MlaD protein 39 114 8.0E-13 T 19-04-2016 IPR003399 Mce/MlaD AMED_1192 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 215 3.1E-13 T 19-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_1192 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 SUPERFAMILY SSF52540 2 51 2.7E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1192 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 SUPERFAMILY SSF52540 86 240 2.7E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1192 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 Gene3D G3DSA:3.40.50.300 2 259 6.5E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1192 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 PANTHER PTHR13696 1 284 4.4E-36 T 19-04-2016 AMED_1192 efa69dbfcdb039aff6ed1ecd69d5c4b8 314 PANTHER PTHR13696:SF64 1 284 4.4E-36 T 19-04-2016 AMED_8552 3ffc3bce63573f2921e5586b74ed8447 71 Pfam PF04024 PspC domain 11 69 8.7E-17 T 19-04-2016 IPR007168 Phage shock protein, PspC, N-terminal AMED_8552 3ffc3bce63573f2921e5586b74ed8447 71 PANTHER PTHR33885 10 70 1.4E-15 T 19-04-2016 AMED_5758 bf89e7ef6237651d9440b3453bb298da 89 PANTHER PTHR11908 1 72 1.4E-18 T 19-04-2016 AMED_5758 bf89e7ef6237651d9440b3453bb298da 89 SUPERFAMILY SSF47741 21 87 3.93E-30 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_5758 bf89e7ef6237651d9440b3453bb298da 89 Gene3D G3DSA:1.10.150.120 10 87 6.1E-33 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_5758 bf89e7ef6237651d9440b3453bb298da 89 PANTHER PTHR11908:SF66 1 72 1.4E-18 T 19-04-2016 AMED_5758 bf89e7ef6237651d9440b3453bb298da 89 Pfam PF01799 [2Fe-2S] binding domain 10 82 7.9E-31 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 Pfam PF13602 Zinc-binding dehydrogenase 202 304 2.1E-14 T 19-04-2016 AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 PANTHER PTHR11695 16 306 6.4E-69 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 SUPERFAMILY SSF50129 3 150 7.91E-33 T 19-04-2016 IPR011032 GroES-like AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 123 2.1E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 Gene3D G3DSA:3.40.50.720 149 235 2.7E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 SMART SM00829 11 304 9.1E-17 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 SUPERFAMILY SSF51735 116 236 5.53E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6653 25bf255d4cb63068152b335309d0b6d2 306 Gene3D G3DSA:3.90.180.10 3 148 5.8E-41 T 19-04-2016 IPR011032 GroES-like AMED_7090 a74e2a1a94fd5dcce9432912cf801851 134 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 9 53 7.8E-5 T 19-04-2016 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMED_3469 62521c08a997feada4396c1d56f968b5 252 PANTHER PTHR10108:SF730 5 148 1.0E-24 T 19-04-2016 AMED_3469 62521c08a997feada4396c1d56f968b5 252 PANTHER PTHR10108:SF730 184 208 1.0E-24 T 19-04-2016 AMED_3469 62521c08a997feada4396c1d56f968b5 252 SUPERFAMILY SSF53335 4 207 5.11E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3469 62521c08a997feada4396c1d56f968b5 252 Gene3D G3DSA:3.40.50.150 1 136 4.9E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3469 62521c08a997feada4396c1d56f968b5 252 Gene3D G3DSA:3.40.50.150 177 206 4.9E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3469 62521c08a997feada4396c1d56f968b5 252 Pfam PF08241 Methyltransferase domain 37 125 2.2E-15 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_3469 62521c08a997feada4396c1d56f968b5 252 PANTHER PTHR10108 5 148 1.0E-24 T 19-04-2016 AMED_3469 62521c08a997feada4396c1d56f968b5 252 PANTHER PTHR10108 184 208 1.0E-24 T 19-04-2016 AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 PANTHER PTHR11695 24 338 6.4E-148 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 37 143 4.3E-32 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 PANTHER PTHR11695:SF403 24 338 6.4E-148 T 19-04-2016 AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 10 337 2.7E-175 T 19-04-2016 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 Gene3D G3DSA:3.40.50.720 178 286 1.6E-8 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 SUPERFAMILY SSF50129 21 176 1.98E-48 T 19-04-2016 IPR011032 GroES-like AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 SUPERFAMILY SSF51735 149 307 8.4E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 Gene3D G3DSA:3.90.180.10 4 177 3.9E-58 T 19-04-2016 IPR011032 GroES-like AMED_3450 d6dcfde6518c3ed585e29ed567bc7619 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 70 84 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_7265 a9cb6585ca0c84e122ac452b21b37a0c 895 SUPERFAMILY SSF55545 18 97 3.49E-5 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_7265 a9cb6585ca0c84e122ac452b21b37a0c 895 Gene3D G3DSA:3.30.379.10 35 96 6.7E-4 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_2731 32d673e33b3928baf5124f15b858e0af 170 SUPERFAMILY SSF88946 7 97 8.24E-18 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 161 6.0E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 Gene3D G3DSA:1.10.10.10 108 165 4.1E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2731 32d673e33b3928baf5124f15b858e0af 170 Gene3D G3DSA:1.10.1740.10 7 82 4.0E-18 T 19-04-2016 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 Pfam PF04545 Sigma-70, region 4 112 160 4.3E-15 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 PANTHER PTHR30173 6 166 4.3E-46 T 19-04-2016 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 Pfam PF04542 Sigma-70 region 2 14 81 4.5E-16 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 PANTHER PTHR30173:SF17 6 166 4.3E-46 T 19-04-2016 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 36 68 - T 19-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2731 32d673e33b3928baf5124f15b858e0af 170 SUPERFAMILY SSF88659 104 164 2.83E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1335 f6d4e98923692b6ea73d2ce249cfdd84 188 Pfam PF11706 CGNR zinc finger 141 177 1.7E-7 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_1335 f6d4e98923692b6ea73d2ce249cfdd84 188 Pfam PF07336 Putative stress-induced transcription regulator 12 135 4.0E-19 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_1335 f6d4e98923692b6ea73d2ce249cfdd84 188 PANTHER PTHR35525 11 186 1.9E-23 T 19-04-2016 AMED_1335 f6d4e98923692b6ea73d2ce249cfdd84 188 SUPERFAMILY SSF160904 8 177 1.11E-34 T 19-04-2016 AMED_1335 f6d4e98923692b6ea73d2ce249cfdd84 188 Gene3D G3DSA:1.10.3300.10 11 178 1.7E-34 T 19-04-2016 IPR023286 ABATE domain AMED_1335 f6d4e98923692b6ea73d2ce249cfdd84 188 PANTHER PTHR35525:SF3 11 186 1.9E-23 T 19-04-2016 AMED_6184 f1f42711403894356186735dfa9ef1c1 289 Gene3D G3DSA:1.10.10.10 213 267 2.6E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6184 f1f42711403894356186735dfa9ef1c1 289 SUPERFAMILY SSF46785 204 269 6.02E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6184 f1f42711403894356186735dfa9ef1c1 289 Pfam PF12802 MarR family 215 257 5.2E-7 T 19-04-2016 AMED_8662 0103e2374c398aad31e67fe7a8f3c2ef 409 PANTHER PTHR14218 332 404 5.0E-20 T 19-04-2016 AMED_8662 0103e2374c398aad31e67fe7a8f3c2ef 409 PANTHER PTHR14218 87 312 5.0E-20 T 19-04-2016 AMED_8662 0103e2374c398aad31e67fe7a8f3c2ef 409 SUPERFAMILY SSF52743 74 405 3.4E-35 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8662 0103e2374c398aad31e67fe7a8f3c2ef 409 PANTHER PTHR14218:SF15 332 404 5.0E-20 T 19-04-2016 AMED_8662 0103e2374c398aad31e67fe7a8f3c2ef 409 PANTHER PTHR14218:SF15 87 312 5.0E-20 T 19-04-2016 AMED_8662 0103e2374c398aad31e67fe7a8f3c2ef 409 Gene3D G3DSA:3.40.50.200 71 405 1.8E-61 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_8384 2a5a5b61dddcff3f1587b91e7db08b75 250 Pfam PF03746 LamB/YcsF family 1 238 1.9E-102 T 19-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF AMED_8384 2a5a5b61dddcff3f1587b91e7db08b75 250 PANTHER PTHR30292 1 250 4.0E-118 T 19-04-2016 AMED_8384 2a5a5b61dddcff3f1587b91e7db08b75 250 PANTHER PTHR30292:SF0 1 250 4.0E-118 T 19-04-2016 AMED_8384 2a5a5b61dddcff3f1587b91e7db08b75 250 SUPERFAMILY SSF88713 1 248 5.11E-97 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_8384 2a5a5b61dddcff3f1587b91e7db08b75 250 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 243 43.86 T 19-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 SUPERFAMILY SSF52540 262 506 6.71E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 Gene3D G3DSA:3.40.50.300 266 510 5.6E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 PANTHER PTHR24220:SF239 20 399 7.2E-162 T 19-04-2016 AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 SUPERFAMILY SSF52540 17 241 1.14E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 SMART SM00382 43 228 1.1E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 SMART SM00382 294 495 7.2 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 ProSitePatterns PS00211 ABC transporters family signature. 419 433 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 Gene3D G3DSA:3.40.50.300 12 248 1.8E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 Pfam PF00005 ABC transporter 36 180 1.7E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 Pfam PF00005 ABC transporter 285 446 6.3E-12 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0856 e5c3e72b4c48f31429bb56d56207ace3 523 PANTHER PTHR24220 20 399 7.2E-162 T 19-04-2016 AMED_7313 56829443d52356b76868472a6bca6a77 435 PANTHER PTHR21366:SF10 285 390 1.4E-23 T 19-04-2016 AMED_7313 56829443d52356b76868472a6bca6a77 435 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 278 344 7.8E-6 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_7313 56829443d52356b76868472a6bca6a77 435 Gene3D G3DSA:3.10.180.10 283 365 4.7E-18 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7313 56829443d52356b76868472a6bca6a77 435 SUPERFAMILY SSF54593 289 392 4.67E-11 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7313 56829443d52356b76868472a6bca6a77 435 PANTHER PTHR21366 285 390 1.4E-23 T 19-04-2016 AMED_4489 2006bc23560d2fbfa76a1db504291ecd 123 Pfam PF13298 DNA polymerase Ligase (LigD) 15 104 1.5E-17 T 19-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMED_4489 2006bc23560d2fbfa76a1db504291ecd 123 PANTHER PTHR39465 6 122 2.4E-13 T 19-04-2016 AMED_5681 d35b859d7cf663259cb00be3ea312bc0 413 PANTHER PTHR36840 204 277 9.2E-25 T 19-04-2016 AMED_5681 d35b859d7cf663259cb00be3ea312bc0 413 PANTHER PTHR36840 13 179 9.2E-25 T 19-04-2016 AMED_5681 d35b859d7cf663259cb00be3ea312bc0 413 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 18 394 1.6E-55 T 19-04-2016 IPR010640 Low temperature requirement A AMED_5681 d35b859d7cf663259cb00be3ea312bc0 413 PANTHER PTHR36840:SF1 204 277 9.2E-25 T 19-04-2016 AMED_5681 d35b859d7cf663259cb00be3ea312bc0 413 PANTHER PTHR36840:SF1 13 179 9.2E-25 T 19-04-2016 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PIRSF PIRSF001112 3 373 3.6E-88 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PANTHER PTHR21661:SF35 3 372 5.3E-78 T 19-04-2016 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 SUPERFAMILY SSF53474 3 369 2.48E-87 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 Gene3D G3DSA:3.40.50.1820 3 370 1.4E-116 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PANTHER PTHR21661 3 372 5.3E-78 T 19-04-2016 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 Pfam PF06441 Epoxide hydrolase N terminus 5 107 4.4E-27 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 344 366 7.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 162 175 7.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 98 116 7.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5546 d88f99c68a990ee12aeb7749b809e32f 373 PRINTS PR00412 Epoxide hydrolase signature 313 329 7.2E-10 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 Gene3D G3DSA:3.40.718.10 4 341 1.6E-117 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 PANTHER PTHR11835:SF37 4 351 1.3E-174 T 19-04-2016 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 PANTHER PTHR11835 4 351 1.3E-174 T 19-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 345 1.5E-89 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 240 259 - T 19-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 SMART SM01329 5 347 3.7E-170 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 SUPERFAMILY SSF53659 3 351 4.14E-114 T 19-04-2016 AMED_7876 249a58c1ac712942207f8f1d52ca2660 352 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 351 4.6E-151 T 19-04-2016 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 AMED_8109 a736ce048110a3bc9801a045c9fba29a 236 SUPERFAMILY SSF81995 6 64 6.02E-6 T 19-04-2016 AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PANTHER PTHR24322 19 148 3.4E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PANTHER PTHR24322 164 200 3.4E-48 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 SUPERFAMILY SSF51735 13 252 6.97E-74 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 1.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 1.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 1.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.4E-34 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 251 1.6E-64 T 19-04-2016 AMED_3383 8eeddd882533e62932c5efc1408938bb 256 Gene3D G3DSA:3.40.50.720 10 253 8.3E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 8.6E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 8.6E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3383 8eeddd882533e62932c5efc1408938bb 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 8.6E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 SUPERFAMILY SSF51556 56 335 3.02E-53 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 PANTHER PTHR11271 1 410 6.8E-75 T 19-04-2016 AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 Gene3D G3DSA:3.20.20.140 72 352 9.3E-52 T 19-04-2016 AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 Pfam PF01979 Amidohydrolase family 53 383 2.6E-30 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 SUPERFAMILY SSF51338 1 56 6.11E-26 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 SUPERFAMILY SSF51338 334 408 6.11E-26 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 Gene3D G3DSA:2.30.40.10 4 71 1.0E-22 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_5293 274b3bd84d924ab99b38d5d50f803e76 429 PANTHER PTHR11271:SF7 1 410 6.8E-75 T 19-04-2016 AMED_6541 e772d2215f933938b11170360e994ccf 388 SUPERFAMILY SSF52172 298 370 1.54E-9 T 19-04-2016 IPR011006 CheY-like superfamily AMED_6541 e772d2215f933938b11170360e994ccf 388 Pfam PF13185 GAF domain 154 300 9.5E-7 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6541 e772d2215f933938b11170360e994ccf 388 Pfam PF03861 ANTAR domain 318 369 7.9E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6541 e772d2215f933938b11170360e994ccf 388 Gene3D G3DSA:1.10.10.10 319 374 6.5E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6541 e772d2215f933938b11170360e994ccf 388 SUPERFAMILY SSF52091 2 95 5.49E-14 T 19-04-2016 IPR002645 STAS domain AMED_6541 e772d2215f933938b11170360e994ccf 388 PANTHER PTHR33495 2 100 7.3E-16 T 19-04-2016 AMED_6541 e772d2215f933938b11170360e994ccf 388 Gene3D G3DSA:3.30.450.40 138 318 2.6E-16 T 19-04-2016 IPR029016 GAF domain-like AMED_6541 e772d2215f933938b11170360e994ccf 388 SUPERFAMILY SSF55781 157 316 6.38E-15 T 19-04-2016 IPR029016 GAF domain-like AMED_6541 e772d2215f933938b11170360e994ccf 388 SMART SM01012 315 370 3.4E-21 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_6541 e772d2215f933938b11170360e994ccf 388 Pfam PF01740 STAS domain 2 92 2.8E-9 T 19-04-2016 IPR002645 STAS domain AMED_6541 e772d2215f933938b11170360e994ccf 388 Gene3D G3DSA:3.30.750.24 2 96 6.1E-16 T 19-04-2016 IPR002645 STAS domain AMED_6541 e772d2215f933938b11170360e994ccf 388 PANTHER PTHR33495:SF2 2 100 7.3E-16 T 19-04-2016 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 SUPERFAMILY SSF51412 2 361 1.33E-51 T 19-04-2016 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 PANTHER PTHR10982 143 362 3.2E-103 T 19-04-2016 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 Pfam PF03060 Nitronate monooxygenase 16 353 7.7E-48 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 PANTHER PTHR10982:SF10 1 112 3.2E-103 T 19-04-2016 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 PANTHER PTHR10982 1 112 3.2E-103 T 19-04-2016 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 PANTHER PTHR10982:SF10 143 362 3.2E-103 T 19-04-2016 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 Gene3D G3DSA:3.20.20.70 114 348 1.5E-61 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2560 8a50511a1c7bdf7aef39c07b1eeba0d7 366 Gene3D G3DSA:3.20.20.70 2 71 1.5E-61 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6794 787314dfbb07e9d7591716c6e51a5f28 311 PANTHER PTHR10366 2 304 8.4E-121 T 19-04-2016 AMED_6794 787314dfbb07e9d7591716c6e51a5f28 311 SUPERFAMILY SSF51735 2 295 6.16E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6794 787314dfbb07e9d7591716c6e51a5f28 311 Gene3D G3DSA:3.40.50.720 2 295 6.6E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6794 787314dfbb07e9d7591716c6e51a5f28 311 PANTHER PTHR10366:SF475 2 304 8.4E-121 T 19-04-2016 AMED_6794 787314dfbb07e9d7591716c6e51a5f28 311 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 222 8.0E-16 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_1746 3ed51797b5502fedd4376677a6e9ff14 159 Pfam PF00583 Acetyltransferase (GNAT) family 53 134 2.8E-8 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1746 3ed51797b5502fedd4376677a6e9ff14 159 Gene3D G3DSA:3.40.630.30 9 156 7.4E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1746 3ed51797b5502fedd4376677a6e9ff14 159 PANTHER PTHR13947 24 143 1.1E-17 T 19-04-2016 AMED_1746 3ed51797b5502fedd4376677a6e9ff14 159 SUPERFAMILY SSF55729 7 143 1.89E-20 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 PANTHER PTHR26402 3 207 1.7E-68 T 19-04-2016 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 PANTHER PTHR26402:SF151 3 207 1.7E-68 T 19-04-2016 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 SUPERFAMILY SSF46894 144 210 3.4E-20 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 1.3E-18 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 SMART SM00421 151 208 6.2E-25 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 SUPERFAMILY SSF52172 2 132 3.27E-27 T 19-04-2016 IPR011006 CheY-like superfamily AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 Gene3D G3DSA:1.10.10.10 154 210 2.6E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 Pfam PF00072 Response regulator receiver domain 5 118 7.7E-22 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 SMART SM00448 3 117 4.4E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 Gene3D G3DSA:3.40.50.2300 2 153 1.1E-32 T 19-04-2016 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 4.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 4.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_4379 4c4b9fd70fe526e28b4aaeaed3722783 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 4.3E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8965 840f9755bb72aed425ce0e02de56b59f 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 117 1.9E-6 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_8965 840f9755bb72aed425ce0e02de56b59f 125 SUPERFAMILY SSF54593 12 123 3.49E-23 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8965 840f9755bb72aed425ce0e02de56b59f 125 Gene3D G3DSA:3.10.180.10 12 122 9.7E-22 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 SUPERFAMILY SSF53822 78 294 3.14E-18 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 Gene3D G3DSA:3.40.50.2300 166 284 4.1E-14 T 19-04-2016 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 SUPERFAMILY SSF47413 6 55 9.38E-11 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 Pfam PF13377 Periplasmic binding protein-like domain 161 308 4.6E-16 T 19-04-2016 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 SMART SM00354 3 65 7.7E-5 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 Gene3D G3DSA:3.40.50.2300 79 165 5.1E-9 T 19-04-2016 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 Gene3D G3DSA:1.10.260.40 6 56 4.4E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 51 5.8E-11 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 PANTHER PTHR30146 3 290 2.7E-32 T 19-04-2016 AMED_4624 b44a5439f05ac579ec6900743d50b5ed 313 PANTHER PTHR30146:SF30 3 290 2.7E-32 T 19-04-2016 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 PANTHER PTHR11695 14 334 4.5E-114 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 PANTHER PTHR11695:SF498 14 334 4.5E-114 T 19-04-2016 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 Pfam PF00107 Zinc-binding dehydrogenase 175 291 1.1E-18 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 SUPERFAMILY SSF51735 141 303 8.92E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 Gene3D G3DSA:3.40.50.720 169 282 4.1E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 133 3.8E-28 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 SMART SM00829 10 333 7.5E-7 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 Gene3D G3DSA:3.90.180.10 3 168 4.6E-57 T 19-04-2016 IPR011032 GroES-like AMED_3504 cb0d04d90e05df478667ecaaeb15ad90 337 SUPERFAMILY SSF50129 4 170 9.74E-47 T 19-04-2016 IPR011032 GroES-like AMED_7492 e81d05ec3908d884c8582399e79e7cfc 309 Gene3D G3DSA:3.40.50.1820 52 294 2.5E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7492 e81d05ec3908d884c8582399e79e7cfc 309 Pfam PF01738 Dienelactone hydrolase family 133 230 2.4E-4 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_7492 e81d05ec3908d884c8582399e79e7cfc 309 SUPERFAMILY SSF53474 58 300 1.36E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7492 e81d05ec3908d884c8582399e79e7cfc 309 PANTHER PTHR10272 77 257 1.3E-16 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 SMART SM00387 309 399 2.1E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 Pfam PF07730 Histidine kinase 209 275 8.6E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 SUPERFAMILY SSF55874 284 396 4.66E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 PANTHER PTHR24421:SF19 188 397 3.3E-75 T 19-04-2016 AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 PANTHER PTHR24421 188 397 3.3E-75 T 19-04-2016 AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 Gene3D G3DSA:3.30.565.10 314 397 5.2E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1387 d376b30a38bad12f80815f42e94d2bfb 399 Pfam PF13796 Putative sensor 14 180 3.2E-25 T 19-04-2016 IPR025828 Putative sensor domain AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 Pfam PF12840 Helix-turn-helix domain 5 64 2.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 Gene3D G3DSA:1.10.10.10 5 103 4.4E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 PANTHER PTHR33154 5 96 4.2E-23 T 19-04-2016 AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 SUPERFAMILY SSF46785 5 96 6.57E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 5.5E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 5.5E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 5.5E-13 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4678 d3645a38a820ec9bd4bede25921c80cb 106 SMART SM00418 6 80 1.1E-24 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4012 f06366d515676670e51f61a0f86540b2 512 PANTHER PTHR24095 13 507 1.2E-63 T 19-04-2016 AMED_4012 f06366d515676670e51f61a0f86540b2 512 Pfam PF00501 AMP-binding enzyme 11 408 3.3E-52 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_4012 f06366d515676670e51f61a0f86540b2 512 Gene3D G3DSA:3.40.50.980 6 188 7.9E-24 T 19-04-2016 AMED_4012 f06366d515676670e51f61a0f86540b2 512 SUPERFAMILY SSF56801 5 508 3.27E-87 T 19-04-2016 AMED_4012 f06366d515676670e51f61a0f86540b2 512 Gene3D G3DSA:2.30.38.10 354 402 6.1E-5 T 19-04-2016 AMED_4012 f06366d515676670e51f61a0f86540b2 512 Gene3D G3DSA:3.30.300.30 403 508 1.8E-15 T 19-04-2016 AMED_4012 f06366d515676670e51f61a0f86540b2 512 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 492 2.5E-8 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_4012 f06366d515676670e51f61a0f86540b2 512 Gene3D G3DSA:3.40.50.980 189 336 9.9E-19 T 19-04-2016 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 SUPERFAMILY SSF51735 5 177 4.67E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0394 110a78eb67282dd2d30b69c22823887b 479 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 180 469 1.6E-118 T 19-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 Gene3D G3DSA:1.10.1040.10 182 436 2.5E-102 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 Gene3D G3DSA:3.40.50.720 2 181 1.5E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0394 110a78eb67282dd2d30b69c22823887b 479 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 7 470 2.8E-203 T 19-04-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 SUPERFAMILY SSF48179 178 472 3.34E-115 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 255 267 - T 19-04-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 175 2.6E-49 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 SMART SM01350 180 470 1.3E-196 T 19-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PANTHER PTHR11811 1 474 6.6E-264 T 19-04-2016 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PANTHER PTHR11811:SF25 1 474 6.6E-264 T 19-04-2016 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 Gene3D G3DSA:1.20.5.320 438 474 1.1E-19 T 19-04-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PIRSF PIRSF000109 1 477 2.4E-198 T 19-04-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 251 278 3.4E-79 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 359 381 3.4E-79 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 68 97 3.4E-79 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 169 197 3.4E-79 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 5 28 3.4E-79 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_0394 110a78eb67282dd2d30b69c22823887b 479 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 121 146 3.4E-79 T 19-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 AMED_2276 016d9e0d93ecc5c16fda3db057d79061 128 SUPERFAMILY SSF50475 6 120 1.12E-16 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2276 016d9e0d93ecc5c16fda3db057d79061 128 Gene3D G3DSA:2.30.110.10 5 126 1.2E-16 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2276 016d9e0d93ecc5c16fda3db057d79061 128 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 8 85 1.4E-7 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_2276 016d9e0d93ecc5c16fda3db057d79061 128 TIGRFAM TIGR03666 Rv2061_F420: PPOX class probable F420-dependent enzyme, Rv2061 family 2 127 8.3E-45 T 19-04-2016 IPR019965 PPOX class F420-dependent enzyme, family Rv2061, putative AMED_2932 adf243b29df1dda7de7aeac2662eff7d 393 SUPERFAMILY SSF55874 296 391 1.73E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2932 adf243b29df1dda7de7aeac2662eff7d 393 PANTHER PTHR24421 44 392 2.9E-30 T 19-04-2016 AMED_2932 adf243b29df1dda7de7aeac2662eff7d 393 Pfam PF07730 Histidine kinase 195 260 6.0E-13 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2932 adf243b29df1dda7de7aeac2662eff7d 393 PANTHER PTHR24421:SF26 44 392 2.9E-30 T 19-04-2016 AMED_5323 017f3ebd32eaa284648d572c977d4cb7 305 PANTHER PTHR30606:SF2 2 303 2.6E-74 T 19-04-2016 AMED_5323 017f3ebd32eaa284648d572c977d4cb7 305 PANTHER PTHR30606 2 303 2.6E-74 T 19-04-2016 AMED_5323 017f3ebd32eaa284648d572c977d4cb7 305 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 289 7.0E-70 T 19-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 PANTHER PTHR30328:SF12 13 234 2.0E-26 T 19-04-2016 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 PANTHER PTHR30328 13 234 2.0E-26 T 19-04-2016 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 Pfam PF13305 WHG domain 88 181 1.3E-12 T 19-04-2016 IPR025996 WHG domain AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 Gene3D G3DSA:1.10.357.10 4 185 6.8E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 SUPERFAMILY SSF46689 3 75 2.15E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 9.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 9.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 2.4E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6735 50523ff0a70b063f0aff58770c1011ad 235 SUPERFAMILY SSF48498 84 186 1.33E-18 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7767 37f63b38553501028d88d28ada7f8355 272 Pfam PF13460 NAD(P)H-binding 8 174 2.0E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7767 37f63b38553501028d88d28ada7f8355 272 PANTHER PTHR14194 4 271 1.4E-81 T 19-04-2016 AMED_7767 37f63b38553501028d88d28ada7f8355 272 PANTHER PTHR14194:SF59 4 271 1.4E-81 T 19-04-2016 AMED_7767 37f63b38553501028d88d28ada7f8355 272 Gene3D G3DSA:3.40.50.720 4 206 1.2E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7767 37f63b38553501028d88d28ada7f8355 272 SUPERFAMILY SSF51735 4 264 9.57E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 PANTHER PTHR10992:SF771 4 109 4.4E-32 T 19-04-2016 AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 PANTHER PTHR10992:SF771 136 240 4.4E-32 T 19-04-2016 AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 SUPERFAMILY SSF53474 8 235 1.04E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 Pfam PF00561 alpha/beta hydrolase fold 22 110 1.3E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 Gene3D G3DSA:3.40.50.1820 2 116 3.0E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 Gene3D G3DSA:3.40.50.1820 133 240 8.6E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 PANTHER PTHR10992 4 109 4.4E-32 T 19-04-2016 AMED_3347 a98140ae50990375d3bcf3ce59427ae4 241 PANTHER PTHR10992 136 240 4.4E-32 T 19-04-2016 AMED_5365 96c9b24d599dbfd383266e4ba778e198 609 PANTHER PTHR35339:SF1 2 518 1.6E-167 T 19-04-2016 AMED_5365 96c9b24d599dbfd383266e4ba778e198 609 PANTHER PTHR35339 2 518 1.6E-167 T 19-04-2016 AMED_5365 96c9b24d599dbfd383266e4ba778e198 609 PIRSF PIRSF014753 1 600 6.9E-134 T 19-04-2016 IPR016624 Uncharacterised conserved protein UCP014753 AMED_5365 96c9b24d599dbfd383266e4ba778e198 609 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 17 363 3.1E-103 T 19-04-2016 IPR016624 Uncharacterised conserved protein UCP014753 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 246 257 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 176 200 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 103 122 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 154 173 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 46 68 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 279 290 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 127 148 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PRINTS PR00688 Xylose isomerase signature 218 245 6.3E-55 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 Gene3D G3DSA:3.20.20.150 5 380 2.0E-135 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 Pfam PF01261 Xylose isomerase-like TIM barrel 42 263 5.1E-27 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 PANTHER PTHR32176 12 330 3.0E-76 T 19-04-2016 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 TIGRFAM TIGR02631 xylA_Arthro: xylose isomerase 5 379 2.2E-199 T 19-04-2016 IPR013453 Xylose isomerase, actinobacteria GO:0009045|GO:0042732 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 Hamap MF_00455 Xylose isomerase [xylA]. 1 378 34.282 T 19-04-2016 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMED_6776 0afd28f34cc60ac295a6384d8e4fa778 382 SUPERFAMILY SSF51658 8 381 1.05E-111 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 SUPERFAMILY SSF53474 13 291 4.45E-59 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 Gene3D G3DSA:3.40.50.1820 14 291 4.8E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 Pfam PF00561 alpha/beta hydrolase fold 37 272 1.6E-20 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 122 135 2.8E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 2.8E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 2.8E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 234 248 2.8E-8 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PANTHER PTHR10992:SF778 7 291 1.1E-49 T 19-04-2016 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 266 288 3.6E-18 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 122 135 3.6E-18 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 42 60 3.6E-18 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 232 248 3.6E-18 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 108 121 3.6E-18 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PRINTS PR00412 Epoxide hydrolase signature 62 77 3.6E-18 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_3136 33b6d2e109a61dcdf8555f803f44a5ba 292 PANTHER PTHR10992 7 291 1.1E-49 T 19-04-2016 AMED_6785 4ddb354466a0af3905c428b08846b874 180 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 176 1.0E-46 T 19-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 AMED_6785 4ddb354466a0af3905c428b08846b874 180 PANTHER PTHR11019:SF115 3 179 2.4E-69 T 19-04-2016 AMED_6785 4ddb354466a0af3905c428b08846b874 180 Pfam PF01965 DJ-1/PfpI family 8 176 3.7E-50 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_6785 4ddb354466a0af3905c428b08846b874 180 PANTHER PTHR11019 3 179 2.4E-69 T 19-04-2016 AMED_6785 4ddb354466a0af3905c428b08846b874 180 SUPERFAMILY SSF52317 7 178 7.64E-46 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6785 4ddb354466a0af3905c428b08846b874 180 Gene3D G3DSA:3.40.50.880 3 179 6.5E-57 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7677 350830e9732c8c1ffeaf38d51c9dc133 200 Gene3D G3DSA:3.40.50.300 15 191 9.5E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7677 350830e9732c8c1ffeaf38d51c9dc133 200 SUPERFAMILY SSF52540 17 187 2.5E-22 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7677 350830e9732c8c1ffeaf38d51c9dc133 200 PANTHER PTHR11711:SF117 17 189 3.6E-60 T 19-04-2016 AMED_7677 350830e9732c8c1ffeaf38d51c9dc133 200 PANTHER PTHR11711 17 189 3.6E-60 T 19-04-2016 AMED_7677 350830e9732c8c1ffeaf38d51c9dc133 200 Pfam PF03029 Conserved hypothetical ATP binding protein 21 188 1.6E-26 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_2703 f05f66b9c4eaa6c5002ced76438bc7a8 393 SUPERFAMILY SSF56112 42 305 3.06E-12 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2602 8f3a1553c709f64e094918d5f0beac7d 255 Gene3D G3DSA:3.30.420.40 113 251 1.1E-30 T 19-04-2016 AMED_2602 8f3a1553c709f64e094918d5f0beac7d 255 PANTHER PTHR18964 4 254 4.6E-65 T 19-04-2016 AMED_2602 8f3a1553c709f64e094918d5f0beac7d 255 PANTHER PTHR18964:SF138 4 254 4.6E-65 T 19-04-2016 AMED_2602 8f3a1553c709f64e094918d5f0beac7d 255 Pfam PF00480 ROK family 10 168 4.2E-14 T 19-04-2016 IPR000600 ROK family AMED_2602 8f3a1553c709f64e094918d5f0beac7d 255 Gene3D G3DSA:3.30.420.40 3 105 9.4E-42 T 19-04-2016 AMED_2602 8f3a1553c709f64e094918d5f0beac7d 255 SUPERFAMILY SSF53067 9 251 3.09E-30 T 19-04-2016 AMED_0225 fd9aefbd2547308713dcd13f0391b951 172 Gene3D G3DSA:1.20.144.10 18 168 3.5E-26 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_0225 fd9aefbd2547308713dcd13f0391b951 172 PANTHER PTHR14969:SF24 29 170 2.3E-46 T 19-04-2016 AMED_0225 fd9aefbd2547308713dcd13f0391b951 172 SUPERFAMILY SSF48317 28 166 2.62E-31 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_0225 fd9aefbd2547308713dcd13f0391b951 172 PANTHER PTHR14969 29 170 2.3E-46 T 19-04-2016 AMED_0225 fd9aefbd2547308713dcd13f0391b951 172 Pfam PF01569 PAP2 superfamily 69 170 4.5E-17 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_0225 fd9aefbd2547308713dcd13f0391b951 172 SMART SM00014 61 165 2.0E-6 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_6390 96ed45c552475e218deabb5b3e513d5c 266 Gene3D G3DSA:2.60.40.10 35 91 1.4E-10 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_6390 96ed45c552475e218deabb5b3e513d5c 266 SUPERFAMILY SSF117074 17 90 7.06E-16 T 19-04-2016 AMED_5661 66822af8833029b77d179c2e15c7ab36 788 SUPERFAMILY SSF53850 552 677 1.45E-10 T 19-04-2016 AMED_5661 66822af8833029b77d179c2e15c7ab36 788 Gene3D G3DSA:3.40.190.10 557 613 6.5E-7 T 19-04-2016 AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 PANTHER PTHR23518 12 389 3.3E-58 T 19-04-2016 AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 PANTHER PTHR23518:SF2 12 389 3.3E-58 T 19-04-2016 AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 SUPERFAMILY SSF103473 12 397 2.35E-42 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 Gene3D G3DSA:1.20.1250.20 237 398 8.6E-15 T 19-04-2016 AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 Gene3D G3DSA:1.20.1250.20 12 200 1.2E-18 T 19-04-2016 AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 Pfam PF07690 Major Facilitator Superfamily 20 238 4.6E-20 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5944 f5a12f6c394f044a0aa2db463d9ef86a 403 Pfam PF07690 Major Facilitator Superfamily 255 399 1.4E-8 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7540 b1af55620afb04851dcaf33438e03bb9 263 SUPERFAMILY SSF51445 49 141 6.63E-7 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7540 b1af55620afb04851dcaf33438e03bb9 263 Gene3D G3DSA:3.20.20.80 59 135 1.5E-4 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PANTHER PTHR24322:SF366 152 184 4.5E-104 T 19-04-2016 AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 Gene3D G3DSA:3.40.50.720 5 244 1.5E-72 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 4.7E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 4.7E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 4.7E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.7E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.7E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 4.7E-28 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PANTHER PTHR24322:SF366 13 136 4.5E-104 T 19-04-2016 AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 183 0.0062 T 19-04-2016 AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PANTHER PTHR24322 13 136 4.5E-104 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 PANTHER PTHR24322 152 184 4.5E-104 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 243 7.4E-53 T 19-04-2016 AMED_6798 3c2866850bdc41ca832ec7f63bb7bb24 246 SUPERFAMILY SSF51735 7 243 1.1E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2012 c215403e70b751ef16097e680a37927d 123 Pfam PF03795 YCII-related domain 1 116 2.1E-15 T 19-04-2016 IPR005545 YCII-related AMED_2012 c215403e70b751ef16097e680a37927d 123 SUPERFAMILY SSF54909 1 118 4.47E-25 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2012 c215403e70b751ef16097e680a37927d 123 PANTHER PTHR35174 2 122 1.5E-28 T 19-04-2016 AMED_2012 c215403e70b751ef16097e680a37927d 123 Gene3D G3DSA:3.30.70.1060 1 118 1.2E-31 T 19-04-2016 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 2.5E-50 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 123 144 2.5E-50 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 2.5E-50 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 49 63 2.5E-50 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PRINTS PR00474 Glutamate 5-kinase family signature 83 111 2.5E-50 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 Pfam PF00696 Amino acid kinase family 13 239 1.3E-41 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PANTHER PTHR11063:SF6 12 369 3.5E-92 T 19-04-2016 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 ProSitePatterns PS00902 Glutamate 5-kinase signature. 213 230 - T 19-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 TIGRFAM TIGR01027 proB: glutamate 5-kinase 12 365 4.7E-116 T 19-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 SMART SM00359 280 359 5.6E-16 T 19-04-2016 IPR002478 PUA domain GO:0003723 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 SUPERFAMILY SSF88697 280 365 1.93E-16 T 19-04-2016 IPR015947 PUA-like domain AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PIRSF PIRSF000729 7 367 3.2E-114 T 19-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 SUPERFAMILY SSF53633 12 259 6.55E-59 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 Pfam PF01472 PUA domain 280 345 6.6E-17 T 19-04-2016 IPR002478 PUA domain GO:0003723 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 Gene3D G3DSA:2.30.130.10 279 365 5.0E-21 T 19-04-2016 IPR015947 PUA-like domain AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 PANTHER PTHR11063 12 369 3.5E-92 T 19-04-2016 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 Gene3D G3DSA:3.40.1160.10 6 262 4.8E-53 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMED_6703 96e7bcab297a611f7984cbe328a71c7b 369 Hamap MF_00456 Glutamate 5-kinase [proB]. 12 261 34.5 T 19-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 AMED_8502 20d4a63bb4a6f48c93e3f35008189ab3 400 SUPERFAMILY SSF50447 117 201 3.49E-5 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMED_8502 20d4a63bb4a6f48c93e3f35008189ab3 400 SUPERFAMILY SSF47781 315 381 1.26E-6 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_5131 0bd1df3ae4f970d71ee90176d75e86d4 144 Pfam PF07681 DoxX 14 87 1.9E-8 T 19-04-2016 IPR032808 DoxX family AMED_5131 0bd1df3ae4f970d71ee90176d75e86d4 144 PANTHER PTHR33452 1 140 2.4E-48 T 19-04-2016 AMED_5131 0bd1df3ae4f970d71ee90176d75e86d4 144 PANTHER PTHR33452:SF4 1 140 2.4E-48 T 19-04-2016 AMED_1284 8d0d230f01334f4222905ea7041b39df 797 Gene3D G3DSA:3.40.50.300 6 159 1.7E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1284 8d0d230f01334f4222905ea7041b39df 797 Pfam PF04408 Helicase associated domain (HA2) 386 453 2.2E-10 T 19-04-2016 IPR007502 Helicase-associated domain GO:0004386 AMED_1284 8d0d230f01334f4222905ea7041b39df 797 Pfam PF08482 ATP-dependent helicase C-terminal 661 784 4.2E-47 T 19-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal AMED_1284 8d0d230f01334f4222905ea7041b39df 797 SUPERFAMILY SSF52540 18 333 6.81E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1284 8d0d230f01334f4222905ea7041b39df 797 PANTHER PTHR18934 6 425 7.1E-119 T 19-04-2016 AMED_1284 8d0d230f01334f4222905ea7041b39df 797 SMART SM00490 226 323 8.7E-13 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_1284 8d0d230f01334f4222905ea7041b39df 797 PANTHER PTHR18934:SF118 6 425 7.1E-119 T 19-04-2016 AMED_1284 8d0d230f01334f4222905ea7041b39df 797 SMART SM00847 383 473 7.2E-8 T 19-04-2016 IPR007502 Helicase-associated domain GO:0004386 AMED_1284 8d0d230f01334f4222905ea7041b39df 797 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 6 796 2.6E-232 T 19-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type AMED_1284 8d0d230f01334f4222905ea7041b39df 797 Gene3D G3DSA:3.40.50.300 195 338 1.2E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1284 8d0d230f01334f4222905ea7041b39df 797 SMART SM00487 4 186 1.1E-16 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_1284 8d0d230f01334f4222905ea7041b39df 797 PIRSF PIRSF005496 1 797 2.9E-265 T 19-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type AMED_1284 8d0d230f01334f4222905ea7041b39df 797 Pfam PF00271 Helicase conserved C-terminal domain 209 321 2.3E-8 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_7573 937080289a6f86e24ae4465d4f918252 136 PANTHER PTHR23091 25 121 1.0E-13 T 19-04-2016 AMED_7573 937080289a6f86e24ae4465d4f918252 136 Gene3D G3DSA:3.40.630.30 17 124 1.8E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7573 937080289a6f86e24ae4465d4f918252 136 Pfam PF00583 Acetyltransferase (GNAT) family 43 121 1.1E-13 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7573 937080289a6f86e24ae4465d4f918252 136 SUPERFAMILY SSF55729 17 123 5.91E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3780 eb4ee6e2f487f87a71f64a877c8fffcc 173 Gene3D G3DSA:1.10.260.40 115 168 1.9E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3780 eb4ee6e2f487f87a71f64a877c8fffcc 173 SUPERFAMILY SSF47413 116 168 1.9E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3780 eb4ee6e2f487f87a71f64a877c8fffcc 173 Pfam PF01381 Helix-turn-helix 120 170 3.7E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3780 eb4ee6e2f487f87a71f64a877c8fffcc 173 SMART SM00530 119 173 7.2E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 PANTHER PTHR13789 2 354 3.6E-84 T 19-04-2016 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.7E-12 T 19-04-2016 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 8.7E-12 T 19-04-2016 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.7E-12 T 19-04-2016 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.7E-12 T 19-04-2016 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 Pfam PF01494 FAD binding domain 3 329 3.2E-10 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 Gene3D G3DSA:3.50.50.60 1 170 3.4E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 Gene3D G3DSA:3.50.50.60 266 342 3.4E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 PANTHER PTHR13789:SF246 2 354 3.6E-84 T 19-04-2016 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 SUPERFAMILY SSF51905 1 165 1.23E-42 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4710 74bb16a053b0fbe302c84905ee64c2bd 403 SUPERFAMILY SSF51905 265 368 1.23E-42 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 PANTHER PTHR10992:SF878 357 471 8.7E-41 T 19-04-2016 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 Pfam PF08386 TAP-like protein 384 477 7.0E-19 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 PANTHER PTHR10992:SF878 176 263 8.7E-41 T 19-04-2016 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 PANTHER PTHR10992:SF878 26 129 8.7E-41 T 19-04-2016 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 Gene3D G3DSA:3.40.50.1820 45 130 3.2E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 Gene3D G3DSA:3.40.50.1820 325 469 3.2E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 Gene3D G3DSA:3.40.50.1820 174 278 3.2E-53 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 Pfam PF00561 alpha/beta hydrolase fold 82 279 1.0E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 SUPERFAMILY SSF53474 82 132 1.71E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 SUPERFAMILY SSF53474 308 454 1.71E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 SUPERFAMILY SSF53474 176 230 1.71E-19 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 PANTHER PTHR10992 176 263 8.7E-41 T 19-04-2016 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 PANTHER PTHR10992 26 129 8.7E-41 T 19-04-2016 AMED_1506 08f8d169984d8fc4a1e8f2cf341c9be5 518 PANTHER PTHR10992 357 471 8.7E-41 T 19-04-2016 AMED_1011 26e81a87ce57aee35b7ad9181d3b3f6e 297 Gene3D G3DSA:3.90.550.10 2 217 8.2E-36 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1011 26e81a87ce57aee35b7ad9181d3b3f6e 297 PANTHER PTHR22916 1 295 1.7E-28 T 19-04-2016 AMED_1011 26e81a87ce57aee35b7ad9181d3b3f6e 297 SUPERFAMILY SSF53448 2 219 4.39E-41 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1011 26e81a87ce57aee35b7ad9181d3b3f6e 297 Pfam PF00535 Glycosyl transferase family 2 8 155 1.4E-19 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 SUPERFAMILY SSF52266 201 409 9.83E-40 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 PANTHER PTHR30383 270 412 5.3E-61 T 19-04-2016 AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 PANTHER PTHR30383 51 254 5.3E-61 T 19-04-2016 AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 207 399 5.8E-21 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 PANTHER PTHR30383:SF3 270 412 5.3E-61 T 19-04-2016 AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 PANTHER PTHR30383:SF3 51 254 5.3E-61 T 19-04-2016 AMED_3068 71dab1e53bc032a93ec5b0cdb6703e9b 412 Gene3D G3DSA:3.40.50.1110 204 405 1.1E-21 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 PANTHER PTHR24362:SF160 1 274 6.3E-77 T 19-04-2016 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 Pfam PF00069 Protein kinase domain 6 250 2.0E-43 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 SUPERFAMILY SSF56112 3 255 8.33E-67 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 SMART SM00220 6 252 8.1E-50 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 12 35 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 Gene3D G3DSA:1.10.510.10 112 253 4.7E-38 T 19-04-2016 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 122 134 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 PANTHER PTHR24362 1 274 6.3E-77 T 19-04-2016 AMED_5934 abb45f8701f00f225edec3bd33d6c9cb 491 Gene3D G3DSA:3.30.200.20 4 111 3.8E-24 T 19-04-2016 AMED_3763 58603b36796f62626e170f12eef5325b 269 Pfam PF11790 Glycosyl hydrolase catalytic core 51 254 2.2E-54 T 19-04-2016 IPR024655 Uncharacterised protein family, glycosyl hydrolase catalytic domain AMED_3763 58603b36796f62626e170f12eef5325b 269 SUPERFAMILY SSF51445 69 265 1.34E-24 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_3763 58603b36796f62626e170f12eef5325b 269 PANTHER PTHR34154:SF3 51 241 3.9E-53 T 19-04-2016 AMED_3763 58603b36796f62626e170f12eef5325b 269 PANTHER PTHR34154 51 241 3.9E-53 T 19-04-2016 AMED_3763 58603b36796f62626e170f12eef5325b 269 Gene3D G3DSA:3.20.20.80 99 249 4.2E-17 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 7 428 94.211 T 19-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 Gene3D G3DSA:3.90.1150.10 5 73 5.1E-37 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 Gene3D G3DSA:3.90.1150.10 322 423 5.1E-37 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 SUPERFAMILY SSF53383 5 424 6.95E-115 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 8 424 1.1E-174 T 19-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 274 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 Gene3D G3DSA:3.40.640.10 74 318 1.9E-74 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 Pfam PF00202 Aminotransferase class-III 37 420 1.2E-79 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 PANTHER PTHR11986 5 433 8.3E-184 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_0494 706a7dfecba484905fc1b22b6efb3fe9 433 PANTHER PTHR11986:SF5 5 433 8.3E-184 T 19-04-2016 AMED_1799 a66b2100c54554976da9528eaf3a65fd 144 Gene3D G3DSA:1.10.260.40 29 130 3.6E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1799 a66b2100c54554976da9528eaf3a65fd 144 SUPERFAMILY SSF47413 46 86 2.12E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1799 a66b2100c54554976da9528eaf3a65fd 144 Pfam PF13560 Helix-turn-helix domain 30 79 2.7E-6 T 19-04-2016 AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 PANTHER PTHR24567 9 223 8.7E-38 T 19-04-2016 AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 SUPERFAMILY SSF51206 9 138 8.64E-29 T 19-04-2016 IPR018490 Cyclic nucleotide-binding-like AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 Gene3D G3DSA:2.60.120.10 9 135 7.2E-27 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 Gene3D G3DSA:1.10.10.10 146 222 1.0E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 SMART SM00419 166 214 5.0E-4 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 Pfam PF13545 Crp-like helix-turn-helix domain 148 221 6.4E-13 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 SUPERFAMILY SSF46785 145 222 3.35E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 Pfam PF00027 Cyclic nucleotide-binding domain 27 114 1.3E-20 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_6755 34ec3c81c5a280f0e1ef77bf0186375c 223 SMART SM00100 9 127 2.3E-20 T 19-04-2016 IPR000595 Cyclic nucleotide-binding domain AMED_9328 7300bc7982a124be7efb47a5658777e9 245 SUPERFAMILY SSF48498 90 238 1.11E-21 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_9328 7300bc7982a124be7efb47a5658777e9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 4.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9328 7300bc7982a124be7efb47a5658777e9 245 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 4.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9328 7300bc7982a124be7efb47a5658777e9 245 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 6.3E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_9328 7300bc7982a124be7efb47a5658777e9 245 PANTHER PTHR30055 3 243 4.2E-17 T 19-04-2016 AMED_9328 7300bc7982a124be7efb47a5658777e9 245 Gene3D G3DSA:1.10.357.10 1 234 8.8E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9328 7300bc7982a124be7efb47a5658777e9 245 SUPERFAMILY SSF46689 6 78 2.74E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1533 860873e9bf810c36791365a7b561bbcb 409 Pfam PF01204 Trehalase 222 371 3.4E-7 T 19-04-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28 AMED_1533 860873e9bf810c36791365a7b561bbcb 409 SUPERFAMILY SSF48208 19 406 2.72E-75 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1001 3032f87bbc5978c38f2163658ea6b9c7 271 Pfam PF06724 Domain of Unknown Function (DUF1206) 200 268 6.0E-17 T 19-04-2016 IPR009597 Domain of unknown function DUF1206 AMED_1001 3032f87bbc5978c38f2163658ea6b9c7 271 Pfam PF06724 Domain of Unknown Function (DUF1206) 104 174 9.8E-15 T 19-04-2016 IPR009597 Domain of unknown function DUF1206 AMED_1001 3032f87bbc5978c38f2163658ea6b9c7 271 Pfam PF06724 Domain of Unknown Function (DUF1206) 23 89 5.8E-20 T 19-04-2016 IPR009597 Domain of unknown function DUF1206 AMED_0581 9d68af1d9560f46d469702706b51d9e7 276 SUPERFAMILY SSF53335 203 256 1.84E-34 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0581 9d68af1d9560f46d469702706b51d9e7 276 SUPERFAMILY SSF53335 34 169 1.84E-34 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0581 9d68af1d9560f46d469702706b51d9e7 276 Pfam PF08241 Methyltransferase domain 62 157 2.0E-21 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_0581 9d68af1d9560f46d469702706b51d9e7 276 PANTHER PTHR10108 57 222 6.8E-23 T 19-04-2016 AMED_0581 9d68af1d9560f46d469702706b51d9e7 276 Gene3D G3DSA:3.40.50.150 40 235 4.7E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8362 f4057999d12b27b9c18bfeea41d93dc3 219 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 166 175 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_8362 f4057999d12b27b9c18bfeea41d93dc3 219 Gene3D G3DSA:1.10.630.10 163 217 1.6E-6 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_8362 f4057999d12b27b9c18bfeea41d93dc3 219 SUPERFAMILY SSF48264 4 217 7.07E-10 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1544 c6feae6e089426dc3b060188374c0c1e 125 Pfam PF08570 Protein of unknown function (DUF1761) 3 122 3.7E-17 T 19-04-2016 IPR013879 Protein of unknown function DUF1761 AMED_8271 6078c479a24b99e25a82d44fe7fe7388 265 Gene3D G3DSA:3.40.50.1110 5 191 6.6E-32 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8271 6078c479a24b99e25a82d44fe7fe7388 265 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 8 182 2.6E-26 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8271 6078c479a24b99e25a82d44fe7fe7388 265 SUPERFAMILY SSF52266 4 191 7.33E-32 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8271 6078c479a24b99e25a82d44fe7fe7388 265 PANTHER PTHR30383:SF8 3 254 1.4E-55 T 19-04-2016 AMED_8271 6078c479a24b99e25a82d44fe7fe7388 265 PANTHER PTHR30383 3 254 1.4E-55 T 19-04-2016 AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 291 302 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 PANTHER PTHR11921:SF22 86 692 2.4E-198 T 19-04-2016 AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 SUPERFAMILY SSF46548 276 388 2.09E-21 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 PANTHER PTHR11921 86 692 2.4E-198 T 19-04-2016 AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 360 371 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 Gene3D G3DSA:1.10.1060.10 266 389 1.7E-30 T 19-04-2016 AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 Pfam PF02754 Cysteine-rich domain 443 534 2.7E-14 T 19-04-2016 IPR004017 Cysteine-rich domain AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 Pfam PF02754 Cysteine-rich domain 575 661 1.9E-18 T 19-04-2016 IPR004017 Cysteine-rich domain AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 SUPERFAMILY SSF103501 25 240 9.55E-7 T 19-04-2016 IPR023234 NarG-like domain AMED_4355 fb12d2290df8b8748a88438ace11b71f 700 Pfam PF13183 4Fe-4S dicluster domain 288 374 2.8E-13 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 SUPERFAMILY SSF51445 7 464 1.61E-123 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 SMART SM00642 15 403 1.8E-124 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 PANTHER PTHR10357:SF11 445 524 1.3E-154 T 19-04-2016 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 PANTHER PTHR10357:SF11 7 412 1.3E-154 T 19-04-2016 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 PANTHER PTHR10357 445 524 1.3E-154 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 PANTHER PTHR10357 7 412 1.3E-154 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 Gene3D G3DSA:3.20.20.80 180 463 3.1E-103 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 Gene3D G3DSA:3.20.20.80 6 106 3.1E-103 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 Gene3D G3DSA:3.90.400.10 107 179 4.0E-28 T 19-04-2016 AMED_6920 796640e891ec3d0f982ecb2fe2792873 525 Pfam PF00128 Alpha amylase, catalytic domain 30 378 6.3E-78 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_4106 dcf46dd960a83a6face5fa8742ad253a 150 Gene3D G3DSA:1.10.10.10 2 79 4.8E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4106 dcf46dd960a83a6face5fa8742ad253a 150 SUPERFAMILY SSF46785 3 133 3.58E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4106 dcf46dd960a83a6face5fa8742ad253a 150 PANTHER PTHR33202 1 136 3.9E-35 T 19-04-2016 AMED_4106 dcf46dd960a83a6face5fa8742ad253a 150 PANTHER PTHR33202:SF7 1 136 3.9E-35 T 19-04-2016 AMED_4106 dcf46dd960a83a6face5fa8742ad253a 150 Pfam PF01475 Ferric uptake regulator family 12 121 2.7E-21 T 19-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMED_2309 433080adff8a6c60cb5a3d00629591c2 294 Gene3D G3DSA:2.40.10.10 92 171 9.6E-11 T 19-04-2016 AMED_2309 433080adff8a6c60cb5a3d00629591c2 294 SUPERFAMILY SSF50494 70 285 3.93E-20 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_2309 433080adff8a6c60cb5a3d00629591c2 294 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 114 119 - T 19-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMED_0608 da5e8f6432e3da45547a46d0a11a33e2 390 PANTHER PTHR33371:SF6 1 318 1.7E-112 T 19-04-2016 AMED_0608 da5e8f6432e3da45547a46d0a11a33e2 390 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 10 302 5.1E-70 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0608 da5e8f6432e3da45547a46d0a11a33e2 390 PANTHER PTHR33371 1 318 1.7E-112 T 19-04-2016 AMED_0608 da5e8f6432e3da45547a46d0a11a33e2 390 Pfam PF02470 MlaD protein 41 116 4.6E-17 T 19-04-2016 IPR003399 Mce/MlaD AMED_0608 da5e8f6432e3da45547a46d0a11a33e2 390 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 162 283 1.7E-8 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_0163 336a8200e2023166b5c6b755a4ac9e2b 491 PANTHER PTHR30365 1 309 4.7E-190 T 19-04-2016 AMED_0163 336a8200e2023166b5c6b755a4ac9e2b 491 PANTHER PTHR30365:SF0 334 486 4.7E-190 T 19-04-2016 AMED_0163 336a8200e2023166b5c6b755a4ac9e2b 491 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 466 1.6E-162 T 19-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 AMED_0163 336a8200e2023166b5c6b755a4ac9e2b 491 PIRSF PIRSF006446 1 486 7.0E-136 T 19-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 AMED_0163 336a8200e2023166b5c6b755a4ac9e2b 491 PANTHER PTHR30365 334 486 4.7E-190 T 19-04-2016 AMED_0163 336a8200e2023166b5c6b755a4ac9e2b 491 PANTHER PTHR30365:SF0 1 309 4.7E-190 T 19-04-2016 AMED_2664 70d14e4b99e8b7da9f3043b384f0801d 80 Pfam PF10944 Protein of unknown function (DUF2630) 3 80 3.2E-33 T 19-04-2016 IPR020311 Uncharacterised protein family, Rv0898c AMED_2664 70d14e4b99e8b7da9f3043b384f0801d 80 ProDom PD062385 SCO7189 RV0898C/MT0921.1 MB0922C 5 80 5.0E-12 T 19-04-2016 IPR020311 Uncharacterised protein family, Rv0898c AMED_8710 aec9d5027bbef39658389342d85ff7ae 460 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 36 374 6.2E-25 T 19-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AMED_8710 aec9d5027bbef39658389342d85ff7ae 460 SUPERFAMILY SSF52540 8 438 7.7E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8710 aec9d5027bbef39658389342d85ff7ae 460 Gene3D G3DSA:3.40.50.300 239 443 1.1E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8710 aec9d5027bbef39658389342d85ff7ae 460 Gene3D G3DSA:3.40.50.300 41 112 1.1E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5257 ba8ac8b149d92890fed8d1b602eed421 353 PANTHER PTHR30519 1 352 1.2E-119 T 19-04-2016 AMED_5257 ba8ac8b149d92890fed8d1b602eed421 353 SUPERFAMILY SSF51726 2 348 1.12E-46 T 19-04-2016 AMED_5257 ba8ac8b149d92890fed8d1b602eed421 353 Gene3D G3DSA:3.20.20.210 2 352 1.0E-63 T 19-04-2016 AMED_5257 ba8ac8b149d92890fed8d1b602eed421 353 PANTHER PTHR30519:SF10 1 352 1.2E-119 T 19-04-2016 AMED_5257 ba8ac8b149d92890fed8d1b602eed421 353 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 3 321 6.2E-16 T 19-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 AMED_5261 4ef1d18f37c4a8f31dbbb32b0838e3f7 296 SUPERFAMILY SSF47240 21 229 5.07E-8 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_5261 4ef1d18f37c4a8f31dbbb32b0838e3f7 296 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 6 280 1.9E-97 T 19-04-2016 IPR025859 P-aminobenzoate N-oxygenase AurF AMED_1819 8453b6d15c07fc44502c33477bbdb467 222 Pfam PF04255 Protein of unknown function (DUF433) 164 213 7.7E-7 T 19-04-2016 IPR007367 Protein of unknown function DUF433 AMED_1819 8453b6d15c07fc44502c33477bbdb467 222 SUPERFAMILY SSF46689 153 214 7.17E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1819 8453b6d15c07fc44502c33477bbdb467 222 Gene3D G3DSA:1.10.10.10 163 213 2.4E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4853 0df8f402e18b8f9335065996b136b8a9 264 Gene3D G3DSA:1.10.230.10 148 200 1.9E-8 T 19-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain AMED_4853 0df8f402e18b8f9335065996b136b8a9 264 SUPERFAMILY SSF48256 8 242 1.31E-36 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_4853 0df8f402e18b8f9335065996b136b8a9 264 Gene3D G3DSA:1.10.580.10 43 147 1.6E-9 T 19-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 AMED_4853 0df8f402e18b8f9335065996b136b8a9 264 Pfam PF00285 Citrate synthase, C-terminal domain 42 240 1.2E-18 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 SUPERFAMILY SSF46689 17 81 3.13E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 Gene3D G3DSA:1.10.10.60 17 76 1.0E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 Gene3D G3DSA:1.10.357.10 80 206 1.1E-40 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 PANTHER PTHR30055 14 207 4.1E-28 T 19-04-2016 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 SUPERFAMILY SSF48498 98 206 1.51E-27 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 PANTHER PTHR30055:SF53 14 207 4.1E-28 T 19-04-2016 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 76 4.6E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 44 6.747226E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2290 baa0df825d057411bdcc635bb5b61af4 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 52 75 6.747226E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6455 a9bdaeac9e135e3cf9698ef932257f29 197 Gene3D G3DSA:1.10.357.10 2 182 1.4E-12 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6455 a9bdaeac9e135e3cf9698ef932257f29 197 SUPERFAMILY SSF48498 89 168 3.0E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6455 a9bdaeac9e135e3cf9698ef932257f29 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 32 2.8E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6455 a9bdaeac9e135e3cf9698ef932257f29 197 SUPERFAMILY SSF46689 2 48 9.23E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 PANTHER PTHR24023 78 386 2.3E-33 T 19-04-2016 AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 Pfam PF02515 CoA-transferase family III 5 375 1.6E-133 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 PANTHER PTHR24023:SF593 78 386 2.3E-33 T 19-04-2016 AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 SUPERFAMILY SSF89796 2 386 4.84E-138 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 Gene3D G3DSA:3.40.50.10540 309 386 1.1E-113 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 Gene3D G3DSA:3.40.50.10540 2 220 1.1E-113 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7274 2ad1f4c18c8a8a9287d685f170a04634 393 Gene3D G3DSA:3.30.1540.10 226 308 4.3E-32 T 19-04-2016 AMED_1570 5dafb3181331ff8118aa8d1da58f47e5 389 Pfam PF13560 Helix-turn-helix domain 3 63 3.7E-11 T 19-04-2016 AMED_1570 5dafb3181331ff8118aa8d1da58f47e5 389 Gene3D G3DSA:1.10.260.40 3 58 6.7E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1570 5dafb3181331ff8118aa8d1da58f47e5 389 SUPERFAMILY SSF47413 3 62 5.33E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1570 5dafb3181331ff8118aa8d1da58f47e5 389 SMART SM00530 7 62 2.5E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_1212 c15f548b36c7c4538d4582e90268746c 196 SUPERFAMILY SSF109854 4 166 4.88E-39 T 19-04-2016 AMED_1212 c15f548b36c7c4538d4582e90268746c 196 Gene3D G3DSA:1.20.120.450 4 169 7.4E-45 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_1212 c15f548b36c7c4538d4582e90268746c 196 Pfam PF04978 Protein of unknown function (DUF664) 15 167 7.3E-48 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_1294 54e16d90e8fcf84fb1bbc676158ec712 163 SUPERFAMILY SSF109854 2 154 6.41E-30 T 19-04-2016 AMED_1294 54e16d90e8fcf84fb1bbc676158ec712 163 Pfam PF04978 Protein of unknown function (DUF664) 8 155 1.5E-37 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_1294 54e16d90e8fcf84fb1bbc676158ec712 163 Gene3D G3DSA:1.20.120.450 2 156 4.0E-31 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_2426 607f1c632f78942845876ea4c7e1e027 262 PANTHER PTHR30188 14 261 1.7E-88 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_2426 607f1c632f78942845876ea4c7e1e027 262 PANTHER PTHR30188:SF4 14 261 1.7E-88 T 19-04-2016 AMED_2426 607f1c632f78942845876ea4c7e1e027 262 Pfam PF02405 Permease MlaE 42 252 4.8E-66 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_3192 86ce4fb4e3a3976c0f19e321be050405 269 PANTHER PTHR32243:SF28 1 269 6.0E-119 T 19-04-2016 AMED_3192 86ce4fb4e3a3976c0f19e321be050405 269 Gene3D G3DSA:1.10.3720.10 1 256 6.8E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3192 86ce4fb4e3a3976c0f19e321be050405 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 253 7.8E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3192 86ce4fb4e3a3976c0f19e321be050405 269 SUPERFAMILY SSF161098 2 269 4.25E-53 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3192 86ce4fb4e3a3976c0f19e321be050405 269 PANTHER PTHR32243 1 269 6.0E-119 T 19-04-2016 AMED_3522 cec06f1f7c85c81560760bcbf5fe0fc4 128 SUPERFAMILY SSF53474 12 124 7.66E-15 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3522 cec06f1f7c85c81560760bcbf5fe0fc4 128 PANTHER PTHR10992:SF305 22 124 1.3E-14 T 19-04-2016 AMED_3522 cec06f1f7c85c81560760bcbf5fe0fc4 128 Gene3D G3DSA:3.40.50.1820 12 124 9.2E-16 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3522 cec06f1f7c85c81560760bcbf5fe0fc4 128 PANTHER PTHR10992 22 124 1.3E-14 T 19-04-2016 AMED_5960 8f5418e7758dd5d161208aebc1351cda 169 SUPERFAMILY SSF46785 6 168 2.18E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5960 8f5418e7758dd5d161208aebc1351cda 169 PANTHER PTHR33169 2 168 1.6E-14 T 19-04-2016 AMED_5960 8f5418e7758dd5d161208aebc1351cda 169 Gene3D G3DSA:1.10.10.10 5 88 6.7E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5960 8f5418e7758dd5d161208aebc1351cda 169 Pfam PF03551 Transcriptional regulator PadR-like family 9 83 2.7E-10 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_8577 f85112591ceace5de37b32a86718ef08 66 Pfam PF02597 ThiS family 11 66 1.4E-11 T 19-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 AMED_8577 f85112591ceace5de37b32a86718ef08 66 SUPERFAMILY SSF54285 1 66 4.09E-14 T 19-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMED_8577 f85112591ceace5de37b32a86718ef08 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 6.6E-16 T 19-04-2016 IPR010035 ThiS, thiamine-biosynthesis AMED_8577 f85112591ceace5de37b32a86718ef08 66 Gene3D G3DSA:3.10.20.30 1 66 1.5E-20 T 19-04-2016 IPR012675 Beta-grasp domain AMED_8721 930305035f75ff5388aecebba6a45c62 1055 SMART SM00862 16 87 1.8E-9 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Pfam PF03704 Bacterial transcriptional activator domain 94 235 7.9E-38 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8721 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF48452 781 919 2.42E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.25.40.10 93 212 6.4E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.25.40.10 614 622 6.4E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF52540 250 518 1.15E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.10.10.10 15 76 1.6E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Pfam PF13191 AAA ATPase domain 260 383 4.9E-8 T 19-04-2016 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.25.40.10 970 997 8.0E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:1.25.40.10 817 921 8.0E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 PANTHER PTHR35807 1 325 5.1E-49 T 19-04-2016 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 75 5.1E-6 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF48452 89 258 4.4E-32 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 Gene3D G3DSA:3.40.50.300 261 397 3.7E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8721 930305035f75ff5388aecebba6a45c62 1055 SUPERFAMILY SSF46894 2 77 3.68E-10 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 SMART SM01043 94 239 4.7E-43 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_8721 930305035f75ff5388aecebba6a45c62 1055 PRINTS PR00364 Disease resistance protein signature 279 294 5.5E-6 T 19-04-2016 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 PRINTS PR00364 Disease resistance protein signature 356 370 5.5E-6 T 19-04-2016 AMED_8721 930305035f75ff5388aecebba6a45c62 1055 PRINTS PR00364 Disease resistance protein signature 462 476 5.5E-6 T 19-04-2016 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 SUPERFAMILY SSF88946 3 89 1.26E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 SUPERFAMILY SSF54427 174 288 3.8E-16 T 19-04-2016 IPR032710 NTF2-like domain AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 Pfam PF04542 Sigma-70 region 2 10 73 7.4E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 Pfam PF08281 Sigma-70, region 4 109 159 6.6E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 PANTHER PTHR30173:SF11 2 287 8.5E-104 T 19-04-2016 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 Gene3D G3DSA:1.10.10.10 107 161 1.2E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 161 1.9E-17 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 SUPERFAMILY SSF88659 84 161 2.62E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 Gene3D G3DSA:1.10.1740.10 3 93 5.5E-15 T 19-04-2016 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 PANTHER PTHR30173 2 287 8.5E-104 T 19-04-2016 AMED_8657 25eab4b986d70cf07e462b46b75bcc6f 293 Gene3D G3DSA:3.10.450.50 170 286 1.5E-12 T 19-04-2016 IPR032710 NTF2-like domain AMED_1775 cd384118897b5d6d413798dcfece978d 362 PANTHER PTHR33371:SF6 17 327 2.5E-114 T 19-04-2016 AMED_1775 cd384118897b5d6d413798dcfece978d 362 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 22 307 7.6E-62 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1775 cd384118897b5d6d413798dcfece978d 362 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 176 288 3.1E-8 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_1775 cd384118897b5d6d413798dcfece978d 362 PANTHER PTHR33371 17 327 2.5E-114 T 19-04-2016 AMED_1775 cd384118897b5d6d413798dcfece978d 362 Pfam PF02470 MlaD protein 38 114 3.3E-15 T 19-04-2016 IPR003399 Mce/MlaD AMED_5696 5dd39939f9a750dd5646b12def476f9d 108 SUPERFAMILY SSF54909 1 93 7.15E-15 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5696 5dd39939f9a750dd5646b12def476f9d 108 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 3.7E-10 T 19-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain AMED_5696 5dd39939f9a750dd5646b12def476f9d 108 Gene3D G3DSA:3.30.70.900 1 90 3.8E-13 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 Gene3D G3DSA:1.20.1250.20 13 206 2.0E-35 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 PRINTS PR01036 Tetracycline resistance protein TetB signature 410 429 1.7E-7 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 1.7E-7 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 1.7E-7 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 1.7E-7 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 SUPERFAMILY SSF103473 12 207 3.53E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 SUPERFAMILY SSF103473 469 498 3.53E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 SUPERFAMILY SSF103473 255 429 3.53E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 PANTHER PTHR23501:SF48 12 505 7.4E-158 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 PANTHER PTHR23501 12 505 7.4E-158 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 Pfam PF07690 Major Facilitator Superfamily 26 419 6.2E-50 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 Gene3D G3DSA:1.20.1250.20 264 430 2.6E-14 T 19-04-2016 AMED_0633 b689568f6bc2f6f2031d31153e5ac819 505 Gene3D G3DSA:1.20.1250.20 470 495 2.6E-14 T 19-04-2016 AMED_5505 b720f9e4e4a91fe1f4b68cecf88a2cea 125 SUPERFAMILY SSF54427 5 115 8.01E-28 T 19-04-2016 IPR032710 NTF2-like domain AMED_5505 b720f9e4e4a91fe1f4b68cecf88a2cea 125 Pfam PF07366 SnoaL-like polyketide cyclase 9 114 2.6E-14 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_5505 b720f9e4e4a91fe1f4b68cecf88a2cea 125 Gene3D G3DSA:3.10.450.50 5 82 9.1E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_7809 d7d9f9d93b0af6aa8951ab8983d87aaa 121 Gene3D G3DSA:3.10.450.50 5 119 5.2E-9 T 19-04-2016 IPR032710 NTF2-like domain AMED_7809 d7d9f9d93b0af6aa8951ab8983d87aaa 121 SUPERFAMILY SSF54427 1 119 1.81E-16 T 19-04-2016 IPR032710 NTF2-like domain AMED_7809 d7d9f9d93b0af6aa8951ab8983d87aaa 121 Pfam PF13474 SnoaL-like domain 11 119 1.7E-5 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 5 1262 9.975 T 19-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF00623 RNA polymerase Rpb1, domain 2 419 560 1.7E-35 T 19-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376:SF32 653 1148 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376:SF32 2 157 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376:SF32 213 626 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376:SF32 1189 1281 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF04997 RNA polymerase Rpb1, domain 1 7 417 8.8E-82 T 19-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF04983 RNA polymerase Rpb1, domain 3 564 725 8.6E-25 T 19-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 SMART SM00663 310 589 7.3E-170 T 19-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF05000 RNA polymerase Rpb1, domain 4 762 817 3.5E-8 T 19-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:2.40.40.20 424 451 7.5E-38 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Gene3D G3DSA:2.40.40.20 492 564 7.5E-38 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 SUPERFAMILY SSF64484 5 1254 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1253 0.0 T 19-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376 653 1148 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376 2 157 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376 213 626 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 PANTHER PTHR19376 1189 1281 0.0 T 19-04-2016 AMED_0657 43ba890f7ee7904a4ffc73d9087fe730 1303 Pfam PF04998 RNA polymerase Rpb1, domain 5 832 1200 1.4E-63 T 19-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 Gene3D G3DSA:1.10.8.10 250 277 9.2E-7 T 19-04-2016 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 PANTHER PTHR10088 15 308 6.6E-101 T 19-04-2016 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 191 208 - T 19-04-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 SUPERFAMILY SSF46934 243 277 3.67E-5 T 19-04-2016 IPR009060 UBA-like GO:0005515 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 Gene3D G3DSA:3.40.50.10490 10 249 1.3E-73 T 19-04-2016 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 9 301 35.261 T 19-04-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|UniPathway: UPA00342 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 SUPERFAMILY SSF53697 15 254 3.24E-60 T 19-04-2016 AMED_8812 ec6b7d11b82a2a32b9050cd0139be94d 309 Pfam PF13580 SIS domain 54 167 3.6E-8 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_1002 e6dc345b9c486dca5d0a5e42e1d0505b 146 PANTHER PTHR33452:SF1 7 139 1.9E-22 T 19-04-2016 AMED_1002 e6dc345b9c486dca5d0a5e42e1d0505b 146 PANTHER PTHR33452 7 139 1.9E-22 T 19-04-2016 AMED_1002 e6dc345b9c486dca5d0a5e42e1d0505b 146 Pfam PF07681 DoxX 9 91 7.9E-18 T 19-04-2016 IPR032808 DoxX family AMED_8212 570d163e78c11e928b6cd4c72f5bd4c0 267 PANTHER PTHR24220:SF331 19 238 2.5E-84 T 19-04-2016 AMED_8212 570d163e78c11e928b6cd4c72f5bd4c0 267 Pfam PF00005 ABC transporter 39 179 2.4E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8212 570d163e78c11e928b6cd4c72f5bd4c0 267 Gene3D G3DSA:3.40.50.300 15 239 7.2E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8212 570d163e78c11e928b6cd4c72f5bd4c0 267 PANTHER PTHR24220 19 238 2.5E-84 T 19-04-2016 AMED_8212 570d163e78c11e928b6cd4c72f5bd4c0 267 SUPERFAMILY SSF52540 18 238 4.79E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8212 570d163e78c11e928b6cd4c72f5bd4c0 267 SMART SM00382 42 227 1.1E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8178 3989978a00cba0da24a4dfa32d2eff1a 153 Pfam PF03995 Peptidase inhibitor family I36 40 112 2.7E-12 T 19-04-2016 AMED_5123 fb90413c8eeba543c4aebc63139521f1 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 7.1E-19 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5123 fb90413c8eeba543c4aebc63139521f1 289 Gene3D G3DSA:1.10.10.10 8 86 4.8E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5123 fb90413c8eeba543c4aebc63139521f1 289 SUPERFAMILY SSF46785 7 102 1.44E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5123 fb90413c8eeba543c4aebc63139521f1 289 PANTHER PTHR30126 8 229 3.9E-18 T 19-04-2016 AMED_4889 2e40deb7e8cc40e1f144c7208fba14e9 341 Gene3D G3DSA:2.130.10.140 47 318 2.1E-31 T 19-04-2016 AMED_4889 2e40deb7e8cc40e1f144c7208fba14e9 341 PANTHER PTHR32010 36 341 3.9E-35 T 19-04-2016 AMED_4889 2e40deb7e8cc40e1f144c7208fba14e9 341 SUPERFAMILY SSF110296 44 315 1.29E-29 T 19-04-2016 AMED_4480 6ad02cd0f9724f30e7fa185b6c4133d4 152 PANTHER PTHR33164 14 151 2.5E-22 T 19-04-2016 AMED_4480 6ad02cd0f9724f30e7fa185b6c4133d4 152 Gene3D G3DSA:1.10.10.10 14 142 2.7E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4480 6ad02cd0f9724f30e7fa185b6c4133d4 152 SUPERFAMILY SSF46785 10 143 4.34E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4480 6ad02cd0f9724f30e7fa185b6c4133d4 152 Pfam PF12802 MarR family 32 91 5.2E-9 T 19-04-2016 AMED_4480 6ad02cd0f9724f30e7fa185b6c4133d4 152 PANTHER PTHR33164:SF12 14 151 2.5E-22 T 19-04-2016 AMED_4480 6ad02cd0f9724f30e7fa185b6c4133d4 152 SMART SM00347 27 127 3.7E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3029 94fb29bf88e919d6fa0c6c8c391cd39f 194 PANTHER PTHR24220 3 160 8.6E-65 T 19-04-2016 AMED_3029 94fb29bf88e919d6fa0c6c8c391cd39f 194 ProSitePatterns PS00211 ABC transporters family signature. 64 78 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3029 94fb29bf88e919d6fa0c6c8c391cd39f 194 PANTHER PTHR24220:SF429 3 160 8.6E-65 T 19-04-2016 AMED_3029 94fb29bf88e919d6fa0c6c8c391cd39f 194 SUPERFAMILY SSF52540 3 153 3.52E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3029 94fb29bf88e919d6fa0c6c8c391cd39f 194 Gene3D G3DSA:3.40.50.300 3 153 9.3E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3029 94fb29bf88e919d6fa0c6c8c391cd39f 194 Pfam PF00005 ABC transporter 3 91 2.8E-13 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 SUPERFAMILY SSF51430 3 308 4.98E-62 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 PANTHER PTHR11732:SF241 3 84 1.1E-112 T 19-04-2016 AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 PANTHER PTHR11732 103 317 1.1E-112 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 PANTHER PTHR11732:SF241 103 317 1.1E-112 T 19-04-2016 AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 Pfam PF00248 Aldo/keto reductase family 7 300 1.6E-44 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 Gene3D G3DSA:3.20.20.100 3 308 1.2E-54 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1841 9b2aca0bed7840f2d752e64ab12267e6 322 PANTHER PTHR11732 3 84 1.1E-112 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 TIGRFAM TIGR03882 cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain 192 357 1.2E-42 T 19-04-2016 IPR022291 Bacteriocin biosynthesis, cyclodehydratase domain AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 399 761 5.3E-78 T 19-04-2016 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 395 727 2.7E-24 T 19-04-2016 IPR003776 YcaO-like domain AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 Pfam PF00899 ThiF family 169 302 8.0E-7 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 399 727 1.1E-95 T 19-04-2016 IPR003776 YcaO-like domain AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 SUPERFAMILY SSF69572 169 313 4.32E-13 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 PANTHER PTHR37809 125 763 2.3E-58 T 19-04-2016 AMED_6889 e6603eee897c9d70d912f2ddef779e43 764 Gene3D G3DSA:3.40.50.720 169 306 8.3E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6384 53dfa73d897c06707210d47b6622ece6 295 Pfam PF13460 NAD(P)H-binding 7 172 8.9E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6384 53dfa73d897c06707210d47b6622ece6 295 PANTHER PTHR14194 1 293 1.8E-54 T 19-04-2016 AMED_6384 53dfa73d897c06707210d47b6622ece6 295 Gene3D G3DSA:3.40.50.720 1 209 3.2E-44 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6384 53dfa73d897c06707210d47b6622ece6 295 SUPERFAMILY SSF51735 2 228 6.55E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6384 53dfa73d897c06707210d47b6622ece6 295 PANTHER PTHR14194:SF21 1 293 1.8E-54 T 19-04-2016 AMED_4328 da70cf469b27d3a7b929e99ab19da23a 345 Gene3D G3DSA:3.20.20.140 11 21 1.5E-34 T 19-04-2016 AMED_4328 da70cf469b27d3a7b929e99ab19da23a 345 Gene3D G3DSA:3.20.20.140 64 324 1.5E-34 T 19-04-2016 AMED_4328 da70cf469b27d3a7b929e99ab19da23a 345 PANTHER PTHR21240:SF12 3 333 8.3E-97 T 19-04-2016 AMED_4328 da70cf469b27d3a7b929e99ab19da23a 345 Pfam PF04909 Amidohydrolase 12 323 1.1E-39 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_4328 da70cf469b27d3a7b929e99ab19da23a 345 PANTHER PTHR21240 3 333 8.3E-97 T 19-04-2016 AMED_4328 da70cf469b27d3a7b929e99ab19da23a 345 SUPERFAMILY SSF51556 10 328 2.34E-40 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7915 d1f43f8087f9249f818783ca2cf9f193 170 SUPERFAMILY SSF55729 1 154 1.06E-18 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7915 d1f43f8087f9249f818783ca2cf9f193 170 Pfam PF00583 Acetyltransferase (GNAT) family 65 150 4.3E-6 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7915 d1f43f8087f9249f818783ca2cf9f193 170 Gene3D G3DSA:3.40.630.30 3 152 4.1E-25 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 Pfam PF02627 Carboxymuconolactone decarboxylase family 1 43 6.2E-7 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 Gene3D G3DSA:1.20.1290.10 1 43 5.6E-7 T 19-04-2016 IPR029032 AhpD-like AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 SUPERFAMILY SSF51735 81 326 4.51E-82 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 96 323 2.6E-62 T 19-04-2016 AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 87 266 0.0036 T 19-04-2016 AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PANTHER PTHR24322 91 219 2.4E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PANTHER PTHR24322 235 267 2.4E-52 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 173 5.6E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 235 254 5.6E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 215 223 5.6E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 222 250 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 256 273 2.0E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 225 2.0E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 235 254 2.0E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 288 308 2.0E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 173 2.0E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 105 2.0E-45 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 Gene3D G3DSA:3.40.50.720 81 325 7.9E-88 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7214 f99db21dd6da7a0a5a43bfbedabd425d 327 SUPERFAMILY SSF69118 1 43 4.03E-10 T 19-04-2016 IPR029032 AhpD-like AMED_9256 8b8b7cea28887e1cc2888ab3be9e606e 154 Pfam PF01025 GrpE 83 148 3.8E-9 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMED_9256 8b8b7cea28887e1cc2888ab3be9e606e 154 Gene3D G3DSA:2.30.22.10 93 152 7.7E-12 T 19-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 AMED_9256 8b8b7cea28887e1cc2888ab3be9e606e 154 SUPERFAMILY SSF51064 94 151 2.62E-8 T 19-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 130 6.2E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 144 164 6.2E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 110 6.2E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 SUPERFAMILY SSF46785 37 167 3.5E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3227 76b24ff836bbddc5579c5231884c0585 178 Pfam PF01047 MarR family 64 119 1.8E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 SMART SM00347 55 154 1.9E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 PANTHER PTHR33164 9 178 5.1E-18 T 19-04-2016 AMED_3227 76b24ff836bbddc5579c5231884c0585 178 Gene3D G3DSA:1.10.10.10 37 167 3.6E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1585 af8bba6f844fa7c095306b2a9640b618 120 PANTHER PTHR38441 10 116 2.4E-30 T 19-04-2016 AMED_1585 af8bba6f844fa7c095306b2a9640b618 120 PANTHER PTHR38441:SF1 10 116 2.4E-30 T 19-04-2016 AMED_1585 af8bba6f844fa7c095306b2a9640b618 120 Pfam PF04341 Protein of unknown function, DUF485 23 109 1.3E-36 T 19-04-2016 IPR007436 Protein of unknown function DUF485 AMED_8019 17524da2a666c64e2f29846125cab0fa 108 PANTHER PTHR38839:SF4 29 105 4.1E-50 T 19-04-2016 AMED_8019 17524da2a666c64e2f29846125cab0fa 108 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 2 107 15.742 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_8019 17524da2a666c64e2f29846125cab0fa 108 Pfam PF02467 Transcription factor WhiB 40 103 1.7E-26 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_8019 17524da2a666c64e2f29846125cab0fa 108 PANTHER PTHR38839 29 105 4.1E-50 T 19-04-2016 AMED_5345 1781421255e85698278376013cd5c520 147 SUPERFAMILY SSF46785 5 132 1.85E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5345 1781421255e85698278376013cd5c520 147 PANTHER PTHR33164 3 145 1.8E-21 T 19-04-2016 AMED_5345 1781421255e85698278376013cd5c520 147 Gene3D G3DSA:1.10.10.10 9 132 9.3E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5345 1781421255e85698278376013cd5c520 147 SMART SM00347 22 121 1.5E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5345 1781421255e85698278376013cd5c520 147 PANTHER PTHR33164:SF11 3 145 1.8E-21 T 19-04-2016 AMED_5345 1781421255e85698278376013cd5c520 147 Pfam PF12802 MarR family 33 85 8.7E-11 T 19-04-2016 AMED_4175 39110a0fe1bd09fbff3f194b5a5fc392 149 SUPERFAMILY SSF55961 1 148 1.78E-17 T 19-04-2016 AMED_4175 39110a0fe1bd09fbff3f194b5a5fc392 149 Gene3D G3DSA:3.30.530.20 1 145 2.1E-10 T 19-04-2016 IPR023393 START-like domain AMED_4175 39110a0fe1bd09fbff3f194b5a5fc392 149 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 144 1.3E-15 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 337 346 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 189 211 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 286 313 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 335 344 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 268 279 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 135 151 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 314 329 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 88 99 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 344 355 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00359 B-class P450 signature 152 167 1.1E-50 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00385 P450 superfamily signature 335 344 8.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00385 P450 superfamily signature 344 355 8.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00385 P450 superfamily signature 268 279 8.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PRINTS PR00385 P450 superfamily signature 233 250 8.8E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 SUPERFAMILY SSF48264 18 394 1.31E-86 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 PANTHER PTHR11712 42 393 1.8E-76 T 19-04-2016 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 Pfam PF00067 Cytochrome P450 45 174 1.6E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 Pfam PF00067 Cytochrome P450 201 365 3.9E-22 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_3426 b12dcd0be63d83e729703222c1af3cac 396 Gene3D G3DSA:1.10.630.10 18 395 3.1E-108 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 SUPERFAMILY SSF52096 63 310 2.21E-70 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 Pfam PF01039 Carboxyl transferase domain 83 567 8.3E-171 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 PANTHER PTHR22855:SF14 54 570 2.2E-278 T 19-04-2016 AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 Gene3D G3DSA:3.90.226.10 64 306 4.8E-71 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 Gene3D G3DSA:3.90.226.10 325 569 3.9E-88 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 SUPERFAMILY SSF52096 320 570 4.84E-80 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6859 0b29cc6fc2e8a86388978f88f1fef92a 570 PANTHER PTHR22855 54 570 2.2E-278 T 19-04-2016 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:3.40.50.200 487 652 8.6E-27 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:3.40.50.200 129 348 8.6E-27 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 SUPERFAMILY SSF52743 498 506 3.27E-29 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 SUPERFAMILY SSF52743 552 656 3.27E-29 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 SUPERFAMILY SSF52743 212 348 3.27E-29 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:2.60.40.10 678 766 4.4E-4 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 SUPERFAMILY SSF49785 786 940 1.83E-10 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 Pfam PF01483 Proprotein convertase P-domain 830 934 1.0E-6 T 19-04-2016 IPR002884 Proprotein convertase, P GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 Pfam PF00082 Subtilase family 300 644 6.4E-16 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 Gene3D G3DSA:2.60.120.260 830 938 1.6E-5 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_2859 5269591cd95bb079e80a12fa1a495f3c 962 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 594 604 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 46 9.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 54 77 9.1E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 75 2.8E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 Gene3D G3DSA:1.10.357.10 21 195 5.8E-33 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 SUPERFAMILY SSF46689 22 94 3.25E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 PANTHER PTHR30055 16 216 2.5E-57 T 19-04-2016 AMED_2089 dcfe0813a90c739e90fcd54f4d136908 219 PANTHER PTHR30055:SF39 16 216 2.5E-57 T 19-04-2016 AMED_2293 c07b00826c81c1b666412796964e6d26 269 PANTHER PTHR22854 2 258 2.1E-100 T 19-04-2016 AMED_2293 c07b00826c81c1b666412796964e6d26 269 SUPERFAMILY SSF51366 12 257 3.86E-78 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMED_2293 c07b00826c81c1b666412796964e6d26 269 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 51 68 - T 19-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 AMED_2293 c07b00826c81c1b666412796964e6d26 269 Gene3D G3DSA:3.20.20.70 2 259 5.4E-94 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_2293 c07b00826c81c1b666412796964e6d26 269 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 2 257 33.381 T 19-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 AMED_2293 c07b00826c81c1b666412796964e6d26 269 PANTHER PTHR22854:SF2 2 258 2.1E-100 T 19-04-2016 AMED_2293 c07b00826c81c1b666412796964e6d26 269 Pfam PF00218 Indole-3-glycerol phosphate synthase 4 252 4.1E-79 T 19-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 AMED_2293 c07b00826c81c1b666412796964e6d26 269 Hamap MF_00134_A Indole-3-glycerol phosphate synthase [trpC]. 33 253 29.315 T 19-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 AMED_3324 5c8c1ecb5a05f1fd46e9c396ffecf1fe 183 Pfam PF09990 Predicted membrane protein (DUF2231) 89 174 3.9E-6 T 19-04-2016 IPR019251 Domain of unknown function DUF2231, transmembrane AMED_6453 51b32ac5c23c91068be3503e4480ac9b 325 SUPERFAMILY SSF56112 9 312 2.04E-18 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_6453 51b32ac5c23c91068be3503e4480ac9b 325 Pfam PF01636 Phosphotransferase enzyme family 86 266 4.0E-12 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_6453 51b32ac5c23c91068be3503e4480ac9b 325 Gene3D G3DSA:3.90.1200.10 128 289 3.1E-10 T 19-04-2016 AMED_8413 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 Pfam PF02627 Carboxymuconolactone decarboxylase family 11 92 8.3E-15 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8413 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 Gene3D G3DSA:1.20.1290.10 10 145 2.5E-42 T 19-04-2016 IPR029032 AhpD-like AMED_8413 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 28 76 9.7E-10 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8413 b59ac28dd3a1fbc4dde4eaf0d1d1cc7c 149 SUPERFAMILY SSF69118 10 143 7.71E-37 T 19-04-2016 IPR029032 AhpD-like AMED_8203 7fcaac079e4e3403f3ea0c317beb6a18 248 SUPERFAMILY SSF53955 54 243 1.31E-30 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_8203 7fcaac079e4e3403f3ea0c317beb6a18 248 Gene3D G3DSA:1.10.530.10 157 226 2.3E-8 T 19-04-2016 AMED_8203 7fcaac079e4e3403f3ea0c317beb6a18 248 Gene3D G3DSA:1.10.530.10 89 117 2.3E-8 T 19-04-2016 AMED_6984 330e7974680d4faa1180ac18cbdabd6a 586 Gene3D G3DSA:2.120.10.10 104 231 3.5E-11 T 19-04-2016 IPR011040 Sialidases AMED_6984 330e7974680d4faa1180ac18cbdabd6a 586 Gene3D G3DSA:2.120.10.10 232 374 3.8E-17 T 19-04-2016 IPR011040 Sialidases AMED_6984 330e7974680d4faa1180ac18cbdabd6a 586 Gene3D G3DSA:2.120.10.10 375 493 1.5E-5 T 19-04-2016 IPR011040 Sialidases AMED_6984 330e7974680d4faa1180ac18cbdabd6a 586 SUPERFAMILY SSF50939 123 488 9.81E-21 T 19-04-2016 IPR011040 Sialidases AMED_5491 c15b346c75d037d72c2e042b99328dae 389 Pfam PF07730 Histidine kinase 176 241 2.4E-16 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_5491 c15b346c75d037d72c2e042b99328dae 389 PANTHER PTHR24421:SF26 46 389 1.2E-75 T 19-04-2016 AMED_5491 c15b346c75d037d72c2e042b99328dae 389 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 296 388 3.5E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5491 c15b346c75d037d72c2e042b99328dae 389 PANTHER PTHR24421 46 389 1.2E-75 T 19-04-2016 AMED_5491 c15b346c75d037d72c2e042b99328dae 389 SUPERFAMILY SSF55874 265 388 9.49E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5491 c15b346c75d037d72c2e042b99328dae 389 Gene3D G3DSA:3.30.565.10 267 388 1.9E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 PANTHER PTHR10884:SF6 38 230 3.1E-75 T 19-04-2016 AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 SUPERFAMILY SSF143243 93 245 1.83E-49 T 19-04-2016 AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 157 218 2.0E-19 T 19-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 85 237 29.377 T 19-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 108 229 1.2E-43 T 19-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 PANTHER PTHR10884 38 230 3.1E-75 T 19-04-2016 AMED_0522 878150a8a0f2fc75db6525f682303f1d 249 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 107 228 3.0E-42 T 19-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 AMED_1598 1e7af8dca49bfe19067acd22befda0e7 121 PANTHER PTHR40077 1 112 4.7E-15 T 19-04-2016 AMED_1598 1e7af8dca49bfe19067acd22befda0e7 121 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 9 93 2.6E-24 T 19-04-2016 IPR023845 Domain of unknown function DUF3817, transmembrane AMED_1598 1e7af8dca49bfe19067acd22befda0e7 121 Pfam PF12823 Domain of unknown function (DUF3817) 8 94 9.9E-24 T 19-04-2016 IPR023845 Domain of unknown function DUF3817, transmembrane AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 SUPERFAMILY SSF56801 7 329 6.8E-76 T 19-04-2016 AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Gene3D G3DSA:2.30.38.10 184 231 4.0E-11 T 19-04-2016 AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 ProSitePatterns PS00455 Putative AMP-binding domain signature. 14 25 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Gene3D G3DSA:3.40.50.980 11 167 7.4E-23 T 19-04-2016 AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Pfam PF00501 AMP-binding enzyme 10 237 1.7E-32 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 PANTHER PTHR24095 12 328 2.2E-56 T 19-04-2016 AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Pfam PF13193 AMP-binding enzyme C-terminal domain 247 317 1.4E-17 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_0508 a1a1fb8c752b0adef97e6e5e72fd41fc 333 Gene3D G3DSA:3.30.300.30 232 326 4.4E-24 T 19-04-2016 AMED_7661 c181a83d8d8ca1986b05894fe35c3f60 146 Gene3D G3DSA:3.40.630.30 1 130 2.8E-29 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7661 c181a83d8d8ca1986b05894fe35c3f60 146 PANTHER PTHR10545:SF39 2 142 2.4E-43 T 19-04-2016 IPR032962 Acetyltransferase HPA2/HPA3 GO:0016746 AMED_7661 c181a83d8d8ca1986b05894fe35c3f60 146 SUPERFAMILY SSF55729 2 130 1.59E-28 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7661 c181a83d8d8ca1986b05894fe35c3f60 146 Pfam PF00583 Acetyltransferase (GNAT) family 53 129 4.4E-15 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_7661 c181a83d8d8ca1986b05894fe35c3f60 146 PANTHER PTHR10545 2 142 2.4E-43 T 19-04-2016 AMED_8585 f0c3215723c101819e775c88f742b44f 321 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 304 2.7E-25 T 19-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type AMED_8585 f0c3215723c101819e775c88f742b44f 321 Gene3D G3DSA:3.30.420.40 3 97 5.2E-7 T 19-04-2016 AMED_8585 f0c3215723c101819e775c88f742b44f 321 SUPERFAMILY SSF53067 3 113 2.81E-14 T 19-04-2016 AMED_8585 f0c3215723c101819e775c88f742b44f 321 SUPERFAMILY SSF53067 117 305 4.78E-29 T 19-04-2016 AMED_8585 f0c3215723c101819e775c88f742b44f 321 PANTHER PTHR12862 5 305 2.3E-32 T 19-04-2016 AMED_0748 7bd090c2d383f3e84d0d7d17582c8f10 159 Gene3D G3DSA:3.40.630.30 1 141 5.6E-33 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0748 7bd090c2d383f3e84d0d7d17582c8f10 159 Pfam PF00583 Acetyltransferase (GNAT) family 50 128 2.8E-17 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_0748 7bd090c2d383f3e84d0d7d17582c8f10 159 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 11 147 5.0E-33 T 19-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 AMED_0748 7bd090c2d383f3e84d0d7d17582c8f10 159 SUPERFAMILY SSF55729 3 139 5.32E-30 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0748 7bd090c2d383f3e84d0d7d17582c8f10 159 PANTHER PTHR23091 1 150 2.6E-25 T 19-04-2016 AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 PANTHER PTHR10996 1 325 3.9E-114 T 19-04-2016 AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 Gene3D G3DSA:3.40.50.720 35 119 2.2E-9 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 286 7.5E-52 T 19-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 SUPERFAMILY SSF52283 41 134 1.02E-10 T 19-04-2016 AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 SUPERFAMILY SSF51735 106 285 8.4E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 19-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 PANTHER PTHR10996:SF122 1 325 3.9E-114 T 19-04-2016 AMED_7871 ec6d9b467116a9ccee74c79cb6c5285a 332 Gene3D G3DSA:3.40.50.720 120 287 1.8E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5276 e4231fcbf9c9e8f1c7deda505e8396cf 126 Pfam PF03779 SPW repeat 21 66 1.5E-9 T 19-04-2016 IPR005530 SPW repeat AMED_5276 e4231fcbf9c9e8f1c7deda505e8396cf 126 Pfam PF03779 SPW repeat 74 120 3.5E-9 T 19-04-2016 IPR005530 SPW repeat AMED_1287 66917022985ad200add92d37230a1ef6 248 PANTHER PTHR13887 1 247 4.3E-24 T 19-04-2016 AMED_1287 66917022985ad200add92d37230a1ef6 248 Gene3D G3DSA:3.40.30.10 72 235 5.2E-29 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1287 66917022985ad200add92d37230a1ef6 248 PANTHER PTHR13887:SF14 1 247 4.3E-24 T 19-04-2016 AMED_1287 66917022985ad200add92d37230a1ef6 248 SUPERFAMILY SSF52833 65 247 3.46E-28 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1287 66917022985ad200add92d37230a1ef6 248 Pfam PF13462 Thioredoxin 71 247 2.0E-20 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 61 1.2E-6 T 19-04-2016 AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 226 251 1.2E-6 T 19-04-2016 AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 Gene3D G3DSA:3.50.50.60 34 235 4.1E-16 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 Gene3D G3DSA:3.50.50.60 236 427 7.6E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 Pfam PF13454 FAD-NAD(P)-binding 41 194 2.1E-6 T 19-04-2016 AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 SUPERFAMILY SSF51905 228 407 3.37E-8 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6854 98f896fd6a4b034db1b92675bf2b4ac8 441 SUPERFAMILY SSF51905 35 259 5.51E-21 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3503 5ef70aed3b34c364fad63e0d8a65e69d 363 Pfam PF12721 RIP homotypic interaction motif 155 188 7.5E-4 T 19-04-2016 IPR025735 RHIM domain AMED_3503 5ef70aed3b34c364fad63e0d8a65e69d 363 Pfam PF12721 RIP homotypic interaction motif 108 124 0.14 T 19-04-2016 IPR025735 RHIM domain AMED_6247 0395879c7c0c337e5b09c61d076c271e 389 PANTHER PTHR23501 13 388 1.3E-111 T 19-04-2016 AMED_6247 0395879c7c0c337e5b09c61d076c271e 389 Pfam PF07690 Major Facilitator Superfamily 22 274 1.2E-22 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6247 0395879c7c0c337e5b09c61d076c271e 389 Gene3D G3DSA:1.20.1250.20 14 192 1.4E-19 T 19-04-2016 AMED_6247 0395879c7c0c337e5b09c61d076c271e 389 Gene3D G3DSA:1.20.1250.20 212 386 5.4E-12 T 19-04-2016 AMED_6247 0395879c7c0c337e5b09c61d076c271e 389 SUPERFAMILY SSF103473 11 385 3.53E-49 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6247 0395879c7c0c337e5b09c61d076c271e 389 PANTHER PTHR23501:SF79 13 388 1.3E-111 T 19-04-2016 AMED_3941 8d77710289a357c0fbc1af36775f3880 163 SUPERFAMILY SSF52833 10 147 8.99E-9 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_3941 8d77710289a357c0fbc1af36775f3880 163 Gene3D G3DSA:3.40.30.10 15 89 3.3E-9 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 SUPERFAMILY SSF55781 38 182 2.01E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Gene3D G3DSA:1.10.10.10 186 241 1.5E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Gene3D G3DSA:3.30.450.40 16 183 6.6E-17 T 19-04-2016 IPR029016 GAF domain-like AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Pfam PF13185 GAF domain 38 171 2.6E-10 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 Pfam PF03861 ANTAR domain 186 237 3.9E-20 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 PIRSF PIRSF036625 6 247 4.1E-53 T 19-04-2016 IPR012074 GAF-ANTAR transcription anti-termination regulator, putative AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 SMART SM01012 183 238 1.2E-21 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5494 53d6c0f0c88f8e9cbebe14d3be10bfe9 247 SMART SM00065 35 181 4.2E-4 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_7732 753a9bb20f522bca34c2ed321958a2d4 179 Gene3D G3DSA:3.40.630.30 14 171 8.4E-42 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7732 753a9bb20f522bca34c2ed321958a2d4 179 SUPERFAMILY SSF55729 17 164 7.78E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7732 753a9bb20f522bca34c2ed321958a2d4 179 PANTHER PTHR13256:SF19 1 166 1.0E-33 T 19-04-2016 AMED_7732 753a9bb20f522bca34c2ed321958a2d4 179 PANTHER PTHR13256 1 166 1.0E-33 T 19-04-2016 AMED_7732 753a9bb20f522bca34c2ed321958a2d4 179 Pfam PF13302 Acetyltransferase (GNAT) domain 23 162 2.7E-29 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 Gene3D G3DSA:3.40.630.30 13 143 1.8E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 Pfam PF13530 Sterol carrier protein domain 192 413 1.3E-51 T 19-04-2016 IPR025559 Enhanced intracellular survival protein domain AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 Gene3D G3DSA:3.40.630.30 151 301 3.5E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 SUPERFAMILY SSF55729 17 314 6.54E-48 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 SUPERFAMILY SSF55718 316 417 5.89E-19 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 PANTHER PTHR37817 7 417 3.8E-58 T 19-04-2016 AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 Pfam PF13527 Acetyltransferase (GNAT) domain 18 143 1.9E-22 T 19-04-2016 AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 PANTHER PTHR37817:SF1 7 417 3.8E-58 T 19-04-2016 AMED_4875 a787b6b9d0ec5d4d9cef0a26bec48918 417 Gene3D G3DSA:3.30.1050.10 317 405 5.7E-17 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_7816 ca80f2e0fc6116586216386ebe3e9996 246 PANTHER PTHR30457:SF0 1 179 1.2E-28 T 19-04-2016 AMED_7816 ca80f2e0fc6116586216386ebe3e9996 246 Gene3D G3DSA:3.40.1210.10 1 238 6.6E-47 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_7816 ca80f2e0fc6116586216386ebe3e9996 246 Pfam PF01975 Survival protein SurE 4 177 5.9E-36 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_7816 ca80f2e0fc6116586216386ebe3e9996 246 SUPERFAMILY SSF64167 1 237 3.53E-39 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMED_7816 ca80f2e0fc6116586216386ebe3e9996 246 PANTHER PTHR30457 1 179 1.2E-28 T 19-04-2016 AMED_5583 b231bf162946e164023f98cb4ff5d312 142 PRINTS PR00075 Fatty acid desaturase family 1 signature 12 33 1.1E-6 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_5583 b231bf162946e164023f98cb4ff5d312 142 PRINTS PR00075 Fatty acid desaturase family 1 signature 55 69 1.1E-6 T 19-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 AMED_5583 b231bf162946e164023f98cb4ff5d312 142 PANTHER PTHR11351 2 118 1.1E-51 T 19-04-2016 AMED_5583 b231bf162946e164023f98cb4ff5d312 142 PANTHER PTHR11351:SF3 2 118 1.1E-51 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 Gene3D G3DSA:3.30.420.40 220 376 3.2E-46 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 PANTHER PTHR18964 306 395 3.0E-79 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 PANTHER PTHR18964 61 269 3.0E-79 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 Gene3D G3DSA:3.30.420.40 83 219 7.3E-40 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 SUPERFAMILY SSF53067 83 394 7.78E-60 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 Pfam PF00480 ROK family 85 392 4.4E-58 T 19-04-2016 IPR000600 ROK family AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 Gene3D G3DSA:1.10.10.10 19 78 3.6E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 ProSitePatterns PS01125 ROK family signature. 215 242 - T 19-04-2016 IPR000600 ROK family AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 PANTHER PTHR18964:SF123 306 395 3.0E-79 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 PANTHER PTHR18964:SF123 61 269 3.0E-79 T 19-04-2016 AMED_3973 2f1844241c39cb75b0678052ab9b8be6 400 SUPERFAMILY SSF46785 14 77 9.72E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6862 badceed12597e2d3e72147157e08a572 190 PANTHER PTHR30466:SF2 32 183 1.5E-39 T 19-04-2016 AMED_6862 badceed12597e2d3e72147157e08a572 190 SMART SM00903 35 182 2.5E-56 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_6862 badceed12597e2d3e72147157e08a572 190 SUPERFAMILY SSF50475 31 184 1.32E-48 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6862 badceed12597e2d3e72147157e08a572 190 PANTHER PTHR30466 32 183 1.5E-39 T 19-04-2016 AMED_6862 badceed12597e2d3e72147157e08a572 190 Gene3D G3DSA:2.30.110.10 31 186 4.7E-53 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6862 badceed12597e2d3e72147157e08a572 190 Pfam PF01613 Flavin reductase like domain 35 183 4.6E-35 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 Pfam PF00476 DNA polymerase family A 203 546 2.1E-21 T 19-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 PANTHER PTHR10133 465 528 5.0E-28 T 19-04-2016 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 PANTHER PTHR10133 251 448 5.0E-28 T 19-04-2016 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 PANTHER PTHR10133 18 36 5.0E-28 T 19-04-2016 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 SMART SM00482 310 520 2.2E-6 T 19-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 Gene3D G3DSA:3.30.70.370 294 332 1.3E-7 T 19-04-2016 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 Gene3D G3DSA:3.30.70.370 484 538 1.3E-7 T 19-04-2016 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 Gene3D G3DSA:1.10.150.20 333 483 1.8E-11 T 19-04-2016 AMED_6983 96b7b635d6d3c344e07c54af4eff8a1b 562 SUPERFAMILY SSF56672 154 561 1.01E-56 T 19-04-2016 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 Pfam PF16360 GTP-binding GTPase Middle Region 163 249 8.7E-29 T 19-04-2016 IPR032305 GTP-binding protein, middle domain AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 PANTHER PTHR10229 23 465 1.4E-168 T 19-04-2016 IPR016496 GTPase HflX GO:0005525 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 PANTHER PTHR10229:SF0 23 465 1.4E-168 T 19-04-2016 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 Pfam PF01926 50S ribosome-binding GTPase 257 379 4.2E-21 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 Pfam PF13167 GTP-binding GTPase N-terminal 73 161 6.1E-34 T 19-04-2016 IPR025121 GTPase HflX, N-terminal AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 Gene3D G3DSA:3.40.50.300 255 422 2.1E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 257 277 7.3E-8 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 324 342 7.3E-8 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 SUPERFAMILY SSF52540 256 445 6.04E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 Hamap MF_00900 GTPase HflX [hflX]. 76 449 47.882 T 19-04-2016 IPR016496 GTPase HflX GO:0005525 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 PIRSF PIRSF006809 48 481 3.3E-159 T 19-04-2016 IPR016496 GTPase HflX GO:0005525 AMED_2389 84d79d2b1a20d3f878ce2872954fe2e2 482 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 57 419 1.2E-133 T 19-04-2016 IPR016496 GTPase HflX GO:0005525 AMED_2458 719da004f11c487e98fe63855d1441e1 162 Pfam PF16473 3' exoribonuclease, RNase T-like 2 155 1.0E-18 T 19-04-2016 IPR033390 3'-5' exoribonuclease Rv2179c-like domain AMED_2458 719da004f11c487e98fe63855d1441e1 162 Hamap MF_00977 3'-5' exoribonuclease. 1 159 43.166 T 19-04-2016 IPR030853 3-5 exoribonuclease, actinobacteria GO:0000287|GO:0008408 AMED_5415 902afd563bd73f89b40aeb17aae42baa 269 Pfam PF01061 ABC-2 type transporter 14 232 6.1E-17 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_5415 902afd563bd73f89b40aeb17aae42baa 269 PIRSF PIRSF006648 1 268 9.7E-17 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_2035 d2d001c765c8a2954443b77895fae041 85 ProDom PD069408 TRANSMEMBRANE MEMBRANE RV2876/MT2944.1 CGL2017/CG2211 ML1584 POSSIBLE P20 12 58 2.0E-7 T 19-04-2016 IPR024341 Protein of unknown function DUF2631 AMED_2035 d2d001c765c8a2954443b77895fae041 85 Pfam PF10939 Protein of unknown function (DUF2631) 2 65 1.0E-29 T 19-04-2016 IPR024341 Protein of unknown function DUF2631 AMED_3254 a045a11222a8a5cca6956e5af6a1d8ef 313 PANTHER PTHR22925 33 281 1.2E-30 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3254 a045a11222a8a5cca6956e5af6a1d8ef 313 Pfam PF04616 Glycosyl hydrolases family 43 34 281 3.8E-31 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3254 a045a11222a8a5cca6956e5af6a1d8ef 313 Gene3D G3DSA:2.115.10.20 18 305 6.3E-47 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3254 a045a11222a8a5cca6956e5af6a1d8ef 313 SUPERFAMILY SSF75005 16 308 3.28E-45 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3254 a045a11222a8a5cca6956e5af6a1d8ef 313 PANTHER PTHR22925:SF29 33 281 1.2E-30 T 19-04-2016 AMED_4962 e88767e90a916c097ce91249d077bf2d 251 Gene3D G3DSA:3.60.20.10 1 242 2.3E-41 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_4962 e88767e90a916c097ce91249d077bf2d 251 Hamap MF_02036 Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase [egtC]. 1 246 38.708 T 19-04-2016 IPR032889 Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase, Actinobacteria GO:0016811|GO:0052699 KEGG: 00311+3.5.1.11|KEGG: 00340+3.5.1.118|MetaCyc: PWY-7255|UniPathway: UPA01014 AMED_4962 e88767e90a916c097ce91249d077bf2d 251 TIGRFAM TIGR03442 TIGR03442: ergothioneine biosynthesis protein EgtC 1 243 5.4E-77 T 19-04-2016 IPR017808 Ergothioneine biosynthesis protein EgtC GO:0052699 AMED_4962 e88767e90a916c097ce91249d077bf2d 251 PANTHER PTHR11907 1 245 5.2E-70 T 19-04-2016 AMED_4962 e88767e90a916c097ce91249d077bf2d 251 PANTHER PTHR11907:SF5 1 245 5.2E-70 T 19-04-2016 AMED_4962 e88767e90a916c097ce91249d077bf2d 251 Pfam PF13522 Glutamine amidotransferase domain 77 217 3.8E-15 T 19-04-2016 AMED_4962 e88767e90a916c097ce91249d077bf2d 251 SUPERFAMILY SSF56235 2 241 7.39E-19 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_5503 f92e0b42dac5fba5481d5123fc4a3ebe 271 PANTHER PTHR11935 25 250 3.4E-45 T 19-04-2016 AMED_5503 f92e0b42dac5fba5481d5123fc4a3ebe 271 SMART SM00849 22 205 6.0E-14 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5503 f92e0b42dac5fba5481d5123fc4a3ebe 271 Gene3D G3DSA:3.60.15.10 13 232 1.9E-33 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5503 f92e0b42dac5fba5481d5123fc4a3ebe 271 Pfam PF00753 Metallo-beta-lactamase superfamily 22 205 9.3E-14 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5503 f92e0b42dac5fba5481d5123fc4a3ebe 271 SUPERFAMILY SSF56281 23 248 2.1E-33 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5503 f92e0b42dac5fba5481d5123fc4a3ebe 271 PANTHER PTHR11935:SF5 25 250 3.4E-45 T 19-04-2016 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 Pfam PF13377 Periplasmic binding protein-like domain 182 342 1.6E-31 T 19-04-2016 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 PANTHER PTHR30146 16 343 8.2E-90 T 19-04-2016 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 18 63 3.4E-15 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 SUPERFAMILY SSF47413 15 74 1.03E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 Gene3D G3DSA:3.40.50.2300 187 324 8.9E-41 T 19-04-2016 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 19 37 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 Gene3D G3DSA:3.40.50.2300 69 186 3.2E-33 T 19-04-2016 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 SMART SM00354 16 86 7.7E-23 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 Gene3D G3DSA:1.10.260.40 17 68 8.4E-22 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3406 95a189986b847c2f4b2a7cd4648bc42f 343 SUPERFAMILY SSF53822 76 343 3.99E-57 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_8469 594553a290eb9df713bb1c419f918cb5 281 Pfam PF11268 Protein of unknown function (DUF3071) 1 169 2.1E-61 T 19-04-2016 IPR021421 Protein of unknown function DUF3071 AMED_1617 0cc148c92d7cd5384ef085b12bd4f563 125 Pfam PF04248 Domain of unknown function (DUF427) 24 114 1.5E-31 T 19-04-2016 IPR007361 Domain of unknown function DUF427 AMED_1617 0cc148c92d7cd5384ef085b12bd4f563 125 PANTHER PTHR34310 5 122 3.1E-50 T 19-04-2016 AMED_1617 0cc148c92d7cd5384ef085b12bd4f563 125 PANTHER PTHR34310:SF3 5 122 3.1E-50 T 19-04-2016 AMED_5691 4791716b2cbf3e61855a6f79824b457a 178 Gene3D G3DSA:1.20.1290.10 48 161 3.1E-22 T 19-04-2016 IPR029032 AhpD-like AMED_5691 4791716b2cbf3e61855a6f79824b457a 178 PANTHER PTHR35446 43 178 6.2E-13 T 19-04-2016 AMED_5691 4791716b2cbf3e61855a6f79824b457a 178 SUPERFAMILY SSF69118 30 160 8.11E-26 T 19-04-2016 IPR029032 AhpD-like AMED_6972 e2462d74f81662d41251fb3f4af19cf9 777 Pfam PF13191 AAA ATPase domain 13 191 5.5E-8 T 19-04-2016 AMED_6972 e2462d74f81662d41251fb3f4af19cf9 777 SUPERFAMILY SSF52540 25 63 8.9E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6972 e2462d74f81662d41251fb3f4af19cf9 777 SUPERFAMILY SSF52540 131 238 8.9E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 530 640 2.4E-26 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 641 744 8.0E-28 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF48452 833 1012 5.61E-26 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF48452 538 869 4.36E-47 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF52540 20 97 2.72E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SUPERFAMILY SSF52540 186 314 2.72E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 745 822 5.9E-24 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF14559 Tetratricopeptide repeat 815 868 3.5E-6 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13191 AAA ATPase domain 20 230 1.1E-10 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13432 Tetratricopeptide repeat 679 733 5.7E-4 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13432 Tetratricopeptide repeat 535 598 1.5E-6 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13432 Tetratricopeptide repeat 604 665 8.3E-9 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 PANTHER PTHR23083 120 131 9.3E-91 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 PANTHER PTHR23083 535 991 9.3E-91 T 19-04-2016 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF13181 Tetratricopeptide repeat 772 800 0.079 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 564 597 1.3 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 598 631 0.0099 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 666 699 38.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 802 835 0.13 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 700 733 0.026 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 530 563 0.0023 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 734 767 2.8E-6 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 768 801 0.031 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 632 665 1.2E-5 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 904 937 9.8 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 870 903 4.7E-7 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 938 970 290.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 SMART SM00028 836 869 20.0 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF00515 Tetratricopeptide repeat 871 902 1.7E-8 T 19-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Pfam PF00515 Tetratricopeptide repeat 736 766 5.0E-7 T 19-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMED_4366 13772fac1ace558be7e3170a517bdba3 1052 Gene3D G3DSA:1.25.40.10 823 1025 2.7E-34 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1057 5a56112bb4f26031464b67156b9cd751 107 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 49 78 1.4E-8 T 19-04-2016 IPR019933 DivIVA domain AMED_2056 fad302091105823a1caedba35e583872 143 PANTHER PTHR23091:SF275 11 142 2.3E-29 T 19-04-2016 AMED_2056 fad302091105823a1caedba35e583872 143 Pfam PF13673 Acetyltransferase (GNAT) domain 45 141 5.8E-11 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2056 fad302091105823a1caedba35e583872 143 PANTHER PTHR23091 11 142 2.3E-29 T 19-04-2016 AMED_2056 fad302091105823a1caedba35e583872 143 Gene3D G3DSA:3.40.630.30 11 141 1.4E-36 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2056 fad302091105823a1caedba35e583872 143 SUPERFAMILY SSF55729 10 142 9.57E-28 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6375 aec4a45858930ebc8561f7b41dfdc01a 162 Gene3D G3DSA:1.10.10.10 93 149 1.8E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6375 aec4a45858930ebc8561f7b41dfdc01a 162 SUPERFAMILY SSF88659 72 149 4.36E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6375 aec4a45858930ebc8561f7b41dfdc01a 162 Pfam PF08281 Sigma-70, region 4 97 146 5.8E-9 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6375 aec4a45858930ebc8561f7b41dfdc01a 162 SUPERFAMILY SSF88946 4 64 2.04E-6 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6375 aec4a45858930ebc8561f7b41dfdc01a 162 Gene3D G3DSA:1.10.1740.10 5 64 6.1E-4 T 19-04-2016 AMED_6375 aec4a45858930ebc8561f7b41dfdc01a 162 PANTHER PTHR30173 5 151 1.1E-13 T 19-04-2016 AMED_2390 1f35442c452568522fb926fb2c9106e1 338 Gene3D G3DSA:2.130.10.10 46 125 8.5E-7 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_2390 1f35442c452568522fb926fb2c9106e1 338 Gene3D G3DSA:2.130.10.10 194 266 8.5E-7 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_2390 1f35442c452568522fb926fb2c9106e1 338 SUPERFAMILY SSF50952 45 269 5.62E-11 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 SUPERFAMILY SSF46785 5 61 4.67E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 19-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 Gene3D G3DSA:1.10.10.10 5 57 4.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 Gene3D G3DSA:3.40.50.2300 201 361 1.1E-27 T 19-04-2016 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 PANTHER PTHR30146 84 365 5.1E-35 T 19-04-2016 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 Pfam PF13377 Periplasmic binding protein-like domain 197 360 1.3E-28 T 19-04-2016 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 Gene3D G3DSA:3.40.50.2300 85 200 6.6E-19 T 19-04-2016 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 SMART SM00420 7 59 4.5E-17 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 6.0E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 6.0E-9 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 Pfam PF08220 DeoR-like helix-turn-helix domain 7 60 3.9E-16 T 19-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMED_3196 94e1b064580b4f380f0ac562b43046f4 369 SUPERFAMILY SSF53822 85 364 2.9E-34 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 SMART SM00422 13 83 2.0E-14 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 PANTHER PTHR30204:SF2 5 130 1.7E-43 T 19-04-2016 AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 Pfam PF13411 MerR HTH family regulatory protein 14 81 1.9E-18 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 Gene3D G3DSA:1.10.1660.10 13 128 1.0E-30 T 19-04-2016 AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 PANTHER PTHR30204 5 130 1.7E-43 T 19-04-2016 AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 ProSitePatterns PS00552 MerR-type HTH domain signature. 16 38 - T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_2008 c4e6c12d7854ba0a5c34af3c6ca9a321 144 SUPERFAMILY SSF46955 13 128 3.44E-27 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_9140 6119cd5e3dc73658ae380a9252e768a9 288 PANTHER PTHR30146 16 286 5.9E-64 T 19-04-2016 AMED_9140 6119cd5e3dc73658ae380a9252e768a9 288 Gene3D G3DSA:3.40.50.2300 124 287 7.3E-49 T 19-04-2016 AMED_9140 6119cd5e3dc73658ae380a9252e768a9 288 SUPERFAMILY SSF53822 19 287 1.81E-58 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_9140 6119cd5e3dc73658ae380a9252e768a9 288 Pfam PF13377 Periplasmic binding protein-like domain 125 286 1.2E-33 T 19-04-2016 AMED_9140 6119cd5e3dc73658ae380a9252e768a9 288 Gene3D G3DSA:3.40.50.2300 16 123 4.3E-22 T 19-04-2016 AMED_1484 362b971cf1495c39366c4dbcf8910048 199 Gene3D G3DSA:3.90.420.10 19 196 7.7E-48 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_1484 362b971cf1495c39366c4dbcf8910048 199 SUPERFAMILY SSF56524 17 197 3.27E-56 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_1484 362b971cf1495c39366c4dbcf8910048 199 Pfam PF00174 Oxidoreductase molybdopterin binding domain 35 179 2.4E-31 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_1484 362b971cf1495c39366c4dbcf8910048 199 PANTHER PTHR19372 16 196 2.8E-56 T 19-04-2016 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 Pfam PF07690 Major Facilitator Superfamily 39 426 6.2E-41 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 PRINTS PR01035 Tetracycline resistance protein signature 74 93 2.4E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 PRINTS PR01035 Tetracycline resistance protein signature 44 60 2.4E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 PRINTS PR01035 Tetracycline resistance protein signature 157 179 2.4E-5 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 PANTHER PTHR23501:SF37 23 472 5.4E-140 T 19-04-2016 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 PANTHER PTHR23501 23 472 5.4E-140 T 19-04-2016 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 Gene3D G3DSA:1.20.1250.20 27 213 1.7E-27 T 19-04-2016 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 Gene3D G3DSA:1.20.1250.20 290 471 2.2E-8 T 19-04-2016 AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 SUPERFAMILY SSF103473 22 215 7.98E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9315 3ab793985514a8f1ddfb9d8c320d5371 477 SUPERFAMILY SSF103473 265 468 7.98E-55 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1445 9c04a85c38abfb7ddde4b0707434900e 165 SUPERFAMILY SSF55729 17 124 1.49E-5 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1445 9c04a85c38abfb7ddde4b0707434900e 165 Gene3D G3DSA:3.40.630.30 18 119 1.1E-5 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3532 e33e4acf263b11d462d32014a0fbdd09 251 Gene3D G3DSA:1.20.1250.20 113 248 2.0E-5 T 19-04-2016 AMED_3532 e33e4acf263b11d462d32014a0fbdd09 251 PANTHER PTHR23513:SF9 109 244 1.3E-28 T 19-04-2016 AMED_3532 e33e4acf263b11d462d32014a0fbdd09 251 PANTHER PTHR23513 109 244 1.3E-28 T 19-04-2016 AMED_3532 e33e4acf263b11d462d32014a0fbdd09 251 Pfam PF05977 Transmembrane secretion effector 83 237 1.6E-7 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_3532 e33e4acf263b11d462d32014a0fbdd09 251 SUPERFAMILY SSF103473 79 249 1.12E-6 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 Pfam PF00775 Dioxygenase 75 131 9.8E-7 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 PANTHER PTHR34315:SF1 55 137 4.1E-45 T 19-04-2016 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 PANTHER PTHR34315:SF1 166 256 4.1E-45 T 19-04-2016 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 SUPERFAMILY SSF49482 171 257 3.27E-47 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 SUPERFAMILY SSF49482 48 131 3.27E-47 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 Gene3D G3DSA:2.60.130.10 166 255 1.6E-54 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 Gene3D G3DSA:2.60.130.10 44 131 1.6E-54 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 PANTHER PTHR34315 55 137 4.1E-45 T 19-04-2016 AMED_3443 6f1e654f3ee75f9549f0fb78b6226e72 285 PANTHER PTHR34315 166 256 4.1E-45 T 19-04-2016 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.70.98.10 697 942 2.1E-79 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF49303 198 276 1.58E-10 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.60.40.320 558 658 1.8E-27 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF74650 677 941 2.51E-78 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF02929 Beta galactosidase small chain 683 937 6.1E-59 T 19-04-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PANTHER PTHR10066 27 942 3.4E-285 T 19-04-2016 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 28 194 4.2E-38 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF16353 Domain of unknown function(DUF4981) 569 654 2.5E-23 T 19-04-2016 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PANTHER PTHR10066:SF72 27 942 3.4E-285 T 19-04-2016 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 277 561 1.4E-100 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF49785 13 194 2.98E-58 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 SMART SM01038 676 940 4.5E-99 T 19-04-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.60.120.260 24 183 1.5E-63 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF49303 555 657 1.15E-26 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 327 352 - T 19-04-2016 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:2.60.40.320 184 275 2.3E-13 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 SUPERFAMILY SSF51445 277 556 4.09E-89 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 392 406 - T 19-04-2016 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 Gene3D G3DSA:3.20.20.80 276 555 3.8E-97 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 286 300 9.1E-31 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 317 335 9.1E-31 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 469 484 9.1E-31 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 392 407 9.1E-31 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_4597 a95fb29488eb6759a932bebc0a68e55b 943 PRINTS PR00132 Glycosyl hydrolase family 2 signature 122 137 9.1E-31 T 19-04-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_1343 7c848e419971c0d1610e42ec1a579edd 239 SUPERFAMILY SSF51735 3 224 8.75E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1343 7c848e419971c0d1610e42ec1a579edd 239 Gene3D G3DSA:3.40.50.720 3 235 5.0E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1343 7c848e419971c0d1610e42ec1a579edd 239 Pfam PF00106 short chain dehydrogenase 3 184 4.3E-16 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 SMART SM01043 95 239 6.0E-21 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 SUPERFAMILY SSF48452 92 232 1.21E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 Pfam PF03704 Bacterial transcriptional activator domain 98 230 3.5E-24 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 SUPERFAMILY SSF46894 3 89 2.66E-8 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 Gene3D G3DSA:1.10.10.10 24 89 5.9E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 SMART SM00862 16 89 3.4E-5 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 77 1.4E-5 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_6762 80ddee234df9320b0b5d39ab8792cb26 276 PANTHER PTHR35807 1 274 5.3E-28 T 19-04-2016 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 PANTHER PTHR11638 1 171 2.6E-24 T 19-04-2016 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 PANTHER PTHR11638:SF18 1 171 2.6E-24 T 19-04-2016 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 SUPERFAMILY SSF81923 73 172 1.44E-12 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 SUPERFAMILY SSF81923 3 66 8.44E-8 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 Gene3D G3DSA:1.10.1780.10 1 172 6.8E-36 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 125 171 1.2E-8 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0415 a7071e57d97b6070cd28bd3104182a55 175 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 61 5.2E-6 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_4791 a8b8263a1ca8eba3faf837adda60fff1 131 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 84 7.9E-28 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_4791 a8b8263a1ca8eba3faf837adda60fff1 131 PANTHER PTHR30007:SF18 8 130 1.7E-41 T 19-04-2016 AMED_4791 a8b8263a1ca8eba3faf837adda60fff1 131 PANTHER PTHR30007 8 130 1.7E-41 T 19-04-2016 AMED_5054 a8b8263a1ca8eba3faf837adda60fff1 131 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 84 7.9E-28 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_5054 a8b8263a1ca8eba3faf837adda60fff1 131 PANTHER PTHR30007:SF18 8 130 1.7E-41 T 19-04-2016 AMED_5054 a8b8263a1ca8eba3faf837adda60fff1 131 PANTHER PTHR30007 8 130 1.7E-41 T 19-04-2016 AMED_5806 a8b8263a1ca8eba3faf837adda60fff1 131 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 84 7.9E-28 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_5806 a8b8263a1ca8eba3faf837adda60fff1 131 PANTHER PTHR30007:SF18 8 130 1.7E-41 T 19-04-2016 AMED_5806 a8b8263a1ca8eba3faf837adda60fff1 131 PANTHER PTHR30007 8 130 1.7E-41 T 19-04-2016 AMED_7952 e29629802ecdbd21818179c0616cf96a 396 SUPERFAMILY SSF103473 5 384 1.31E-30 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7952 e29629802ecdbd21818179c0616cf96a 396 Gene3D G3DSA:1.20.1250.20 207 380 4.3E-12 T 19-04-2016 AMED_7952 e29629802ecdbd21818179c0616cf96a 396 Gene3D G3DSA:1.20.1250.20 10 192 7.2E-8 T 19-04-2016 AMED_7952 e29629802ecdbd21818179c0616cf96a 396 PANTHER PTHR23514:SF13 5 396 5.5E-85 T 19-04-2016 AMED_7952 e29629802ecdbd21818179c0616cf96a 396 PANTHER PTHR23514 5 396 5.5E-85 T 19-04-2016 AMED_0093 581679536775d940fc88357299c9cb28 173 PANTHER PTHR34820 1 108 6.6E-12 T 19-04-2016 AMED_0093 581679536775d940fc88357299c9cb28 173 SUPERFAMILY SSF81296 15 110 1.61E-20 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_0093 581679536775d940fc88357299c9cb28 173 Pfam PF04234 CopC domain 16 109 7.7E-23 T 19-04-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMED_0093 581679536775d940fc88357299c9cb28 173 Gene3D G3DSA:2.60.40.1220 15 110 1.8E-22 T 19-04-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like AMED_0093 581679536775d940fc88357299c9cb28 173 PANTHER PTHR34820:SF2 1 108 6.6E-12 T 19-04-2016 AMED_1004 8066c0ca51adf7e80b49bbda70bde6f0 278 Gene3D G3DSA:3.40.50.720 1 210 1.3E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1004 8066c0ca51adf7e80b49bbda70bde6f0 278 PANTHER PTHR14194:SF21 1 277 1.3E-49 T 19-04-2016 AMED_1004 8066c0ca51adf7e80b49bbda70bde6f0 278 PANTHER PTHR14194 1 277 1.3E-49 T 19-04-2016 AMED_1004 8066c0ca51adf7e80b49bbda70bde6f0 278 SUPERFAMILY SSF51735 1 272 5.9E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1004 8066c0ca51adf7e80b49bbda70bde6f0 278 Pfam PF13460 NAD(P)H-binding 7 175 1.7E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8763 b7abad12e39f9475773bdd0def9371e3 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 7.4E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8763 b7abad12e39f9475773bdd0def9371e3 195 SUPERFAMILY SSF46689 13 94 2.0E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8763 b7abad12e39f9475773bdd0def9371e3 195 PANTHER PTHR30055 5 195 1.8E-16 T 19-04-2016 AMED_8763 b7abad12e39f9475773bdd0def9371e3 195 SUPERFAMILY SSF48498 89 183 1.27E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8763 b7abad12e39f9475773bdd0def9371e3 195 Gene3D G3DSA:1.10.357.10 18 186 3.6E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7602 2c590babbb49eba552ec6605c31bf78d 410 PANTHER PTHR33744 263 409 6.6E-17 T 19-04-2016 AMED_7602 2c590babbb49eba552ec6605c31bf78d 410 Pfam PF13556 PucR C-terminal helix-turn-helix domain 344 402 3.7E-13 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_4830 91a2a6a8b71613c47ce6775ce112aa0b 331 Gene3D G3DSA:2.60.120.260 204 330 2.6E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4830 91a2a6a8b71613c47ce6775ce112aa0b 331 SUPERFAMILY SSF49785 197 328 2.98E-10 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 PANTHER PTHR11695 12 378 5.5E-156 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 SUPERFAMILY SSF50129 1 188 1.73E-63 T 19-04-2016 IPR011032 GroES-like AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 Pfam PF00107 Zinc-binding dehydrogenase 187 256 3.1E-9 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 SUPERFAMILY SSF51735 153 340 2.3E-63 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 PANTHER PTHR11695:SF586 12 378 5.5E-156 T 19-04-2016 AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 Gene3D G3DSA:3.90.180.10 1 178 6.7E-53 T 19-04-2016 IPR011032 GroES-like AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 Gene3D G3DSA:3.40.50.720 179 298 1.2E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 137 2.1E-28 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_6561 29883bd7ab85b827851b7cfad70656f7 378 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 1.1E-11 T 19-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated AMED_5755 1ffb09714e1744050959cdc7b1fd0170 134 Pfam PF06210 Protein of unknown function (DUF1003) 39 128 2.4E-14 T 19-04-2016 IPR010406 Protein of unknown function DUF1003 AMED_4957 3698662c704896b8455cd9a423c61529 284 Gene3D G3DSA:3.40.50.1820 11 283 2.9E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4957 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 1.5E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4957 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 228 242 1.5E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4957 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 1.5E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4957 3698662c704896b8455cd9a423c61529 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 1.5E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4957 3698662c704896b8455cd9a423c61529 284 SUPERFAMILY SSF53474 6 283 1.04E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4957 3698662c704896b8455cd9a423c61529 284 PANTHER PTHR10992 20 284 5.9E-41 T 19-04-2016 AMED_4957 3698662c704896b8455cd9a423c61529 284 Pfam PF00561 alpha/beta hydrolase fold 32 269 9.7E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 4.0E-7 T 19-04-2016 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 4.0E-7 T 19-04-2016 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 4.0E-7 T 19-04-2016 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 Gene3D G3DSA:3.50.50.60 1 181 4.6E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 Gene3D G3DSA:3.50.50.60 270 350 4.6E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 PANTHER PTHR13789 1 413 9.4E-137 T 19-04-2016 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 Pfam PF01494 FAD binding domain 1 330 5.5E-52 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 PANTHER PTHR13789:SF209 1 413 9.4E-137 T 19-04-2016 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 SUPERFAMILY SSF51905 269 378 1.08E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3533 7ef8964c0fc297c40882dd515c0d6926 421 SUPERFAMILY SSF51905 1 176 1.08E-47 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7649 f209e993e645f192d7a1084237c137cd 129 PANTHER PTHR36114 4 123 1.8E-24 T 19-04-2016 AMED_7649 f209e993e645f192d7a1084237c137cd 129 SUPERFAMILY SSF51182 2 113 1.84E-21 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_7649 f209e993e645f192d7a1084237c137cd 129 Gene3D G3DSA:2.60.120.10 4 109 4.6E-34 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_7649 f209e993e645f192d7a1084237c137cd 129 Pfam PF07883 Cupin domain 41 95 2.1E-11 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_5012 464d8e361751d232f9dc7f9fff111509 471 SUPERFAMILY SSF53383 4 375 2.2E-83 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_5012 464d8e361751d232f9dc7f9fff111509 471 PANTHER PTHR11999 4 396 5.4E-106 T 19-04-2016 AMED_5012 464d8e361751d232f9dc7f9fff111509 471 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 40 333 9.5E-16 T 19-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMED_5012 464d8e361751d232f9dc7f9fff111509 471 PANTHER PTHR11999:SF5 4 396 5.4E-106 T 19-04-2016 AMED_5012 464d8e361751d232f9dc7f9fff111509 471 Gene3D G3DSA:3.40.640.10 48 286 1.1E-42 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_3165 463483ac768e0d33d13a3c4cc57c5c04 294 Pfam PF13460 NAD(P)H-binding 8 187 3.6E-16 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3165 463483ac768e0d33d13a3c4cc57c5c04 294 PANTHER PTHR14194:SF57 1 286 9.6E-79 T 19-04-2016 AMED_3165 463483ac768e0d33d13a3c4cc57c5c04 294 Gene3D G3DSA:3.40.50.720 2 224 8.3E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3165 463483ac768e0d33d13a3c4cc57c5c04 294 SUPERFAMILY SSF51735 2 247 4.8E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3165 463483ac768e0d33d13a3c4cc57c5c04 294 PANTHER PTHR14194 1 286 9.6E-79 T 19-04-2016 AMED_4802 a65e6877294a5b2eca117daac2eb43b4 420 PANTHER PTHR23513 1 415 1.3E-68 T 19-04-2016 AMED_4802 a65e6877294a5b2eca117daac2eb43b4 420 Pfam PF05977 Transmembrane secretion effector 12 414 4.3E-26 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_4802 a65e6877294a5b2eca117daac2eb43b4 420 SUPERFAMILY SSF103473 5 401 1.05E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4802 a65e6877294a5b2eca117daac2eb43b4 420 Gene3D G3DSA:1.20.1250.20 5 191 5.9E-16 T 19-04-2016 AMED_4802 a65e6877294a5b2eca117daac2eb43b4 420 Gene3D G3DSA:1.20.1250.20 213 399 1.6E-16 T 19-04-2016 AMED_7897 40870be5239c9a2926e1ad283aaa90c4 630 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 16 434 2.7E-103 T 19-04-2016 IPR026337 HEXXH motif domain AMED_7897 40870be5239c9a2926e1ad283aaa90c4 630 Gene3D G3DSA:1.25.40.10 538 576 9.0E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 SUPERFAMILY SSF46785 8 102 5.85E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 Pfam PF12840 Helix-turn-helix domain 22 78 4.0E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 SMART SM00418 21 99 1.2E-26 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 8.7E-14 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 8.7E-14 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 8.7E-14 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 PANTHER PTHR33154 10 111 3.1E-26 T 19-04-2016 AMED_5835 7d77e1cf37a8489e25b7cfb134c6cff3 118 Gene3D G3DSA:1.10.10.10 10 105 2.5E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8134 de34309132c91de11b3d3e93442e6b0d 248 PANTHER PTHR11487 8 248 1.9E-79 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_8134 de34309132c91de11b3d3e93442e6b0d 248 PANTHER PTHR11487:SF3 8 248 1.9E-79 T 19-04-2016 AMED_8134 de34309132c91de11b3d3e93442e6b0d 248 Gene3D G3DSA:3.40.50.1820 6 246 4.8E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8134 de34309132c91de11b3d3e93442e6b0d 248 SMART SM00824 Thioesterase 25 246 0.001 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_8134 de34309132c91de11b3d3e93442e6b0d 248 SUPERFAMILY SSF53474 8 246 8.39E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8134 de34309132c91de11b3d3e93442e6b0d 248 Pfam PF00975 Thioesterase domain 23 243 1.8E-49 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_7784 958378295335909dfa2c22c278372115 216 Gene3D G3DSA:3.90.870.10 4 209 1.3E-65 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_7784 958378295335909dfa2c22c278372115 216 PANTHER PTHR17490 17 209 2.8E-62 T 19-04-2016 AMED_7784 958378295335909dfa2c22c278372115 216 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 11 208 3.6E-60 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMED_7784 958378295335909dfa2c22c278372115 216 SUPERFAMILY SSF55821 4 208 9.16E-56 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMED_7784 958378295335909dfa2c22c278372115 216 Pfam PF01300 Telomere recombination 24 197 2.7E-44 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 PANTHER PTHR10909 11 484 5.0E-220 T 19-04-2016 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 275 1.8E-18 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 474 607 3.7E-31 T 19-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Gene3D G3DSA:1.20.140.10 276 468 1.2E-39 T 19-04-2016 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 PANTHER PTHR10909:SF340 11 484 5.0E-220 T 19-04-2016 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 SUPERFAMILY SSF56645 42 297 2.23E-41 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 25 1.5E-7 T 19-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Gene3D G3DSA:2.40.110.10 161 275 3.0E-26 T 19-04-2016 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Gene3D G3DSA:1.10.540.10 37 148 5.0E-6 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 291 454 1.3E-13 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_9196 95f72767a86c2d53f9e2a4751895acee 611 SUPERFAMILY SSF47203 295 470 1.93E-29 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_8936 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 2.4E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8936 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 PANTHER PTHR30328 1 153 1.2E-18 T 19-04-2016 AMED_8936 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 Gene3D G3DSA:1.10.357.10 2 214 2.9E-40 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8936 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 SUPERFAMILY SSF48498 89 216 6.0E-24 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8936 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 PANTHER PTHR30328:SF8 1 153 1.2E-18 T 19-04-2016 AMED_8936 3e9d4bd3bf54cd8a2f54bd8ee8f854d6 223 SUPERFAMILY SSF46689 8 79 9.64E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3311 02119bc19581e26b41dfbe086be4feea 254 PANTHER PTHR35152 3 239 9.1E-38 T 19-04-2016 AMED_3311 02119bc19581e26b41dfbe086be4feea 254 Pfam PF03707 Bacterial signalling protein N terminal repeat 54 112 7.8E-15 T 19-04-2016 IPR005330 MHYT domain AMED_3311 02119bc19581e26b41dfbe086be4feea 254 Pfam PF03707 Bacterial signalling protein N terminal repeat 119 177 1.1E-16 T 19-04-2016 IPR005330 MHYT domain AMED_3311 02119bc19581e26b41dfbe086be4feea 254 Pfam PF03707 Bacterial signalling protein N terminal repeat 181 227 2.3E-5 T 19-04-2016 IPR005330 MHYT domain AMED_5120 e85989182edff1111bd1c948b34272e0 96 Gene3D G3DSA:3.30.1390.10 68 94 2.4E-4 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 182 33.762 T 19-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 PANTHER PTHR11241 2 184 7.3E-60 T 19-04-2016 AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 SUPERFAMILY SSF51283 2 184 4.58E-56 T 19-04-2016 IPR029054 dUTPase-like AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 3 181 1.3E-63 T 19-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 Pfam PF00692 dUTPase 70 174 1.8E-9 T 19-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 PANTHER PTHR11241:SF1 2 184 7.3E-60 T 19-04-2016 AMED_9180 6fe06cebdee9776ed537dc9044a0f592 193 Gene3D G3DSA:2.70.40.10 2 184 1.6E-64 T 19-04-2016 IPR029054 dUTPase-like AMED_2498 0d823529697466df49a9e209052749d7 1077 SUPERFAMILY SSF51703 504 1073 1.07E-151 T 19-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 AMED_2498 0d823529697466df49a9e209052749d7 1077 Pfam PF02310 B12 binding domain 13 108 5.1E-11 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_2498 0d823529697466df49a9e209052749d7 1077 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 709 1076 7.3E-95 T 19-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 AMED_2498 0d823529697466df49a9e209052749d7 1077 PANTHER PTHR23408 709 1076 1.9E-199 T 19-04-2016 AMED_2498 0d823529697466df49a9e209052749d7 1077 PANTHER PTHR23408 464 686 1.9E-199 T 19-04-2016 AMED_2498 0d823529697466df49a9e209052749d7 1077 Pfam PF01642 Methylmalonyl-CoA mutase 554 1071 3.9E-142 T 19-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 AMED_2498 0d823529697466df49a9e209052749d7 1077 SUPERFAMILY SSF52242 6 143 2.62E-40 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_2498 0d823529697466df49a9e209052749d7 1077 SUPERFAMILY SSF52540 144 402 4.09E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2498 0d823529697466df49a9e209052749d7 1077 Pfam PF03308 ArgK protein 177 392 1.4E-41 T 19-04-2016 AMED_2498 0d823529697466df49a9e209052749d7 1077 Gene3D G3DSA:3.40.50.300 194 398 1.1E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2498 0d823529697466df49a9e209052749d7 1077 Gene3D G3DSA:3.20.20.240 550 1073 4.2E-194 T 19-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 AMED_2498 0d823529697466df49a9e209052749d7 1077 PANTHER PTHR23408:SF1 709 1076 1.9E-199 T 19-04-2016 AMED_2498 0d823529697466df49a9e209052749d7 1077 PANTHER PTHR23408:SF1 464 686 1.9E-199 T 19-04-2016 AMED_2498 0d823529697466df49a9e209052749d7 1077 Gene3D G3DSA:3.40.50.280 7 136 2.1E-35 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_5240 7b67d9945f12dcd263e34baab5e06d98 409 Pfam PF02720 Domain of unknown function (DUF222) 20 322 4.3E-38 T 19-04-2016 IPR003870 Domain of unknown function DUF222 AMED_5240 7b67d9945f12dcd263e34baab5e06d98 409 SMART SM00507 313 365 1.6E-11 T 19-04-2016 IPR003615 HNH nuclease AMED_5240 7b67d9945f12dcd263e34baab5e06d98 409 Pfam PF01844 HNH endonuclease 330 369 5.5E-6 T 19-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AMED_0963 5aac29b92b69d88b70bb8667718a5adc 272 SUPERFAMILY SSF53335 19 245 2.09E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0963 5aac29b92b69d88b70bb8667718a5adc 272 Pfam PF08241 Methyltransferase domain 50 144 2.8E-20 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_0963 5aac29b92b69d88b70bb8667718a5adc 272 PANTHER PTHR10108 37 198 3.3E-30 T 19-04-2016 AMED_0963 5aac29b92b69d88b70bb8667718a5adc 272 Gene3D G3DSA:3.40.50.150 40 206 4.7E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9334 873a51b4b08ae065dc803a9defd45bf9 421 PANTHER PTHR23513 2 421 1.6E-58 T 19-04-2016 AMED_9334 873a51b4b08ae065dc803a9defd45bf9 421 Gene3D G3DSA:1.20.1250.20 11 193 2.9E-7 T 19-04-2016 AMED_9334 873a51b4b08ae065dc803a9defd45bf9 421 Gene3D G3DSA:1.20.1250.20 232 415 4.3E-6 T 19-04-2016 AMED_9334 873a51b4b08ae065dc803a9defd45bf9 421 PANTHER PTHR23513:SF11 2 421 1.6E-58 T 19-04-2016 AMED_9334 873a51b4b08ae065dc803a9defd45bf9 421 Pfam PF07690 Major Facilitator Superfamily 48 378 4.5E-11 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9334 873a51b4b08ae065dc803a9defd45bf9 421 SUPERFAMILY SSF103473 45 418 1.57E-20 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3892 62354050f08ae683d870aa4da8f5baf8 263 SUPERFAMILY SSF109854 16 143 1.25E-8 T 19-04-2016 AMED_3892 62354050f08ae683d870aa4da8f5baf8 263 PANTHER PTHR40758 1 263 8.6E-30 T 19-04-2016 AMED_3892 62354050f08ae683d870aa4da8f5baf8 263 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 12 137 2.1E-10 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_3892 62354050f08ae683d870aa4da8f5baf8 263 Pfam PF07398 MDMPI C-terminal domain 150 251 6.5E-9 T 19-04-2016 IPR010872 MDMPI C-terminal AMED_3892 62354050f08ae683d870aa4da8f5baf8 263 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 15 232 1.3E-16 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_0929 dfa56d882e4b153e6a01bc968ac51cf5 297 PANTHER PTHR10366 2 290 1.2E-87 T 19-04-2016 AMED_0929 dfa56d882e4b153e6a01bc968ac51cf5 297 PANTHER PTHR10366:SF475 2 290 1.2E-87 T 19-04-2016 AMED_0929 dfa56d882e4b153e6a01bc968ac51cf5 297 SUPERFAMILY SSF51735 1 287 1.02E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0929 dfa56d882e4b153e6a01bc968ac51cf5 297 Gene3D G3DSA:3.40.50.720 1 281 5.2E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0929 dfa56d882e4b153e6a01bc968ac51cf5 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 74 3.0E-11 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 PANTHER PTHR10799 266 392 2.6E-28 T 19-04-2016 AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 232 393 2.8E-42 T 19-04-2016 IPR000160 GGDEF domain AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 SMART SM00267 223 394 4.9E-52 T 19-04-2016 IPR000160 GGDEF domain AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 Pfam PF00990 Diguanylate cyclase, GGDEF domain 234 390 1.1E-40 T 19-04-2016 IPR000160 GGDEF domain AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 PANTHER PTHR10799:SF750 266 392 2.6E-28 T 19-04-2016 AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 Gene3D G3DSA:3.30.70.270 236 393 1.8E-49 T 19-04-2016 AMED_3326 2d10bb07cc05074d49176206d55a40f8 396 SUPERFAMILY SSF55073 240 393 1.65E-41 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_5222 1184a2ec1d3326fd76a9efb389e98073 122 Gene3D G3DSA:3.30.750.24 19 114 1.4E-12 T 19-04-2016 IPR002645 STAS domain AMED_5222 1184a2ec1d3326fd76a9efb389e98073 122 PANTHER PTHR33495 18 118 1.6E-12 T 19-04-2016 AMED_5222 1184a2ec1d3326fd76a9efb389e98073 122 PANTHER PTHR33495:SF2 18 118 1.6E-12 T 19-04-2016 AMED_5222 1184a2ec1d3326fd76a9efb389e98073 122 Pfam PF01740 STAS domain 19 108 3.5E-5 T 19-04-2016 IPR002645 STAS domain AMED_5222 1184a2ec1d3326fd76a9efb389e98073 122 SUPERFAMILY SSF52091 20 112 3.53E-11 T 19-04-2016 IPR002645 STAS domain AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 Pfam PF12840 Helix-turn-helix domain 22 73 7.4E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 8.2E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 8.2E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 PANTHER PTHR33154:SF2 9 106 2.0E-24 T 19-04-2016 AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 PANTHER PTHR33154 9 106 2.0E-24 T 19-04-2016 AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 Gene3D G3DSA:1.10.10.10 13 98 2.5E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 SMART SM00418 21 98 8.5E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_3032 de40266c9bbd0ce5228124336e2e7543 107 SUPERFAMILY SSF46785 9 98 7.9E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1541 445104734782c0c9005125f3aa8ac2c6 350 PANTHER PTHR30024:SF1 32 269 7.5E-38 T 19-04-2016 AMED_1541 445104734782c0c9005125f3aa8ac2c6 350 Pfam PF13379 NMT1-like family 41 268 7.8E-33 T 19-04-2016 AMED_1541 445104734782c0c9005125f3aa8ac2c6 350 PANTHER PTHR30024 32 269 7.5E-38 T 19-04-2016 AMED_1541 445104734782c0c9005125f3aa8ac2c6 350 SUPERFAMILY SSF53850 42 265 3.32E-41 T 19-04-2016 AMED_1541 445104734782c0c9005125f3aa8ac2c6 350 Gene3D G3DSA:3.40.190.10 125 250 3.9E-19 T 19-04-2016 AMED_1541 445104734782c0c9005125f3aa8ac2c6 350 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 43 329 2.1E-56 T 19-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 AMED_5645 8165d3c23e1bc586943d3604be86dbb1 451 SUPERFAMILY SSF54909 13 447 5.54E-114 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5645 8165d3c23e1bc586943d3604be86dbb1 451 PANTHER PTHR30521 35 447 4.2E-99 T 19-04-2016 AMED_5645 8165d3c23e1bc586943d3604be86dbb1 451 PANTHER PTHR30521:SF2 35 447 4.2E-99 T 19-04-2016 AMED_7067 59abc7e4df4d8a2bd90c90d33f00d6df 77 PANTHER PTHR10245 1 68 4.4E-14 T 19-04-2016 AMED_7067 59abc7e4df4d8a2bd90c90d33f00d6df 77 SUPERFAMILY SSF47413 4 66 6.97E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7067 59abc7e4df4d8a2bd90c90d33f00d6df 77 Pfam PF01381 Helix-turn-helix 9 62 1.4E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7067 59abc7e4df4d8a2bd90c90d33f00d6df 77 SMART SM00530 8 63 7.8E-15 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7067 59abc7e4df4d8a2bd90c90d33f00d6df 77 Gene3D G3DSA:1.10.260.40 6 65 1.6E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6397 8547f0c42ce0635de06e69ca13401cd1 145 Gene3D G3DSA:1.10.10.10 4 140 2.9E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6397 8547f0c42ce0635de06e69ca13401cd1 145 PANTHER PTHR33164:SF6 2 143 1.2E-56 T 19-04-2016 AMED_6397 8547f0c42ce0635de06e69ca13401cd1 145 SUPERFAMILY SSF46785 5 135 2.03E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6397 8547f0c42ce0635de06e69ca13401cd1 145 PANTHER PTHR33164 2 143 1.2E-56 T 19-04-2016 AMED_6397 8547f0c42ce0635de06e69ca13401cd1 145 SMART SM00347 21 125 8.5E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6397 8547f0c42ce0635de06e69ca13401cd1 145 Pfam PF13463 Winged helix DNA-binding domain 34 98 2.0E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 Pfam PF00293 NUDIX domain 11 123 2.2E-19 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 SUPERFAMILY SSF55811 8 132 5.69E-28 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 Gene3D G3DSA:3.90.79.10 10 131 3.5E-28 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 PANTHER PTHR22769 10 133 7.6E-20 T 19-04-2016 AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 PRINTS PR00502 NUDIX hydrolase family signature 35 49 2.2E-7 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 PRINTS PR00502 NUDIX hydrolase family signature 49 64 2.2E-7 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7631 5e379ad8a010cd79c0d68d196bac014e 133 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_7041 1d47457a5280462fb5df29b50290590c 298 Pfam PF00480 ROK family 3 292 4.5E-57 T 19-04-2016 IPR000600 ROK family AMED_7041 1d47457a5280462fb5df29b50290590c 298 Gene3D G3DSA:3.30.420.40 137 276 1.8E-42 T 19-04-2016 AMED_7041 1d47457a5280462fb5df29b50290590c 298 PANTHER PTHR18964 1 297 2.9E-63 T 19-04-2016 AMED_7041 1d47457a5280462fb5df29b50290590c 298 Gene3D G3DSA:3.30.420.40 2 136 2.1E-34 T 19-04-2016 AMED_7041 1d47457a5280462fb5df29b50290590c 298 SUPERFAMILY SSF53067 2 296 3.76E-55 T 19-04-2016 AMED_7041 1d47457a5280462fb5df29b50290590c 298 PANTHER PTHR18964:SF123 1 297 2.9E-63 T 19-04-2016 AMED_5620 dc776a1b0e9f72a773e9307b037c2d63 336 SUPERFAMILY SSF53474 12 307 2.36E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5620 dc776a1b0e9f72a773e9307b037c2d63 336 Gene3D G3DSA:3.40.50.1820 24 294 3.8E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0098 379e16e48e4b810a2dc9bda9a7ad71c8 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 251 7.2E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0098 379e16e48e4b810a2dc9bda9a7ad71c8 259 PANTHER PTHR30177 28 259 2.1E-58 T 19-04-2016 AMED_0098 379e16e48e4b810a2dc9bda9a7ad71c8 259 PANTHER PTHR30177:SF4 28 259 2.1E-58 T 19-04-2016 AMED_0098 379e16e48e4b810a2dc9bda9a7ad71c8 259 Gene3D G3DSA:1.10.3720.10 28 247 1.8E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0098 379e16e48e4b810a2dc9bda9a7ad71c8 259 SUPERFAMILY SSF161098 58 245 2.62E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1925 81373cec5595f0ee21b56d4b2ed10ce2 364 Pfam PF01609 Transposase DDE domain 97 300 5.2E-14 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_1925 81373cec5595f0ee21b56d4b2ed10ce2 364 PANTHER PTHR30298 1 302 5.1E-21 T 19-04-2016 AMED_1925 81373cec5595f0ee21b56d4b2ed10ce2 364 Pfam PF13808 DDE_Tnp_1-associated 1 80 5.5E-14 T 19-04-2016 IPR032806 H repeat-associated protein, N-terminal AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 SUPERFAMILY SSF53474 294 350 3.77E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 SUPERFAMILY SSF53474 63 210 3.77E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 PIRSF PIRSF029171 8 366 3.9E-71 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 Gene3D G3DSA:3.40.50.1820 63 225 1.3E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 Gene3D G3DSA:3.40.50.1820 281 348 1.3E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 Pfam PF03583 Secretory lipase 99 366 4.0E-55 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_8444 eb285711a9192aa1e29cb8bc142d77a3 366 PANTHER PTHR34853 21 366 8.5E-69 T 19-04-2016 AMED_2321 5670e4dc9e80ca1e5e4976d0b8f2accd 259 PANTHER PTHR30011 1 211 5.6E-83 T 19-04-2016 AMED_2321 5670e4dc9e80ca1e5e4976d0b8f2accd 259 PANTHER PTHR30011:SF24 1 211 5.6E-83 T 19-04-2016 AMED_2321 5670e4dc9e80ca1e5e4976d0b8f2accd 259 TIGRFAM TIGR03856 F420_MSMEG_2906: probable F420-dependent oxidoreductase, MSMEG_2906 family 6 255 2.9E-124 T 19-04-2016 IPR022480 F420-dependent oxidoreductase, MSMEG2906 AMED_2321 5670e4dc9e80ca1e5e4976d0b8f2accd 259 Pfam PF00296 Luciferase-like monooxygenase 11 213 1.4E-35 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2321 5670e4dc9e80ca1e5e4976d0b8f2accd 259 SUPERFAMILY SSF51679 4 237 2.21E-48 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2321 5670e4dc9e80ca1e5e4976d0b8f2accd 259 Gene3D G3DSA:3.20.20.30 6 214 1.3E-51 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6353 ba91805598f6a622d86a495702bacb6c 140 Gene3D G3DSA:3.30.530.20 4 140 2.8E-18 T 19-04-2016 IPR023393 START-like domain AMED_6353 ba91805598f6a622d86a495702bacb6c 140 SUPERFAMILY SSF55961 4 135 2.09E-21 T 19-04-2016 AMED_6353 ba91805598f6a622d86a495702bacb6c 140 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 137 4.2E-21 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_1431 e130515a9ba83e76889e0bf008608a40 140 Gene3D G3DSA:3.30.450.30 6 128 6.1E-31 T 19-04-2016 AMED_1431 e130515a9ba83e76889e0bf008608a40 140 Pfam PF03259 Roadblock/LC7 domain 8 101 5.2E-23 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_1431 e130515a9ba83e76889e0bf008608a40 140 SMART SM00960 9 101 1.1E-26 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_1431 e130515a9ba83e76889e0bf008608a40 140 SUPERFAMILY SSF103196 2 130 1.38E-34 T 19-04-2016 AMED_1431 e130515a9ba83e76889e0bf008608a40 140 PANTHER PTHR36222 1 140 3.1E-51 T 19-04-2016 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 SUPERFAMILY SSF46689 18 77 9.75E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 3.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 3.5E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 PANTHER PTHR30055 10 196 3.6E-18 T 19-04-2016 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 Gene3D G3DSA:1.10.357.10 66 195 4.6E-15 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 Gene3D G3DSA:1.10.10.60 17 65 1.6E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 5.9E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 Pfam PF16859 Bacterial transcriptional repressor C-terminal 85 189 8.5E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3598 078885badc2cd537d55f12ae5862f16d 197 PANTHER PTHR30055:SF66 10 196 3.6E-18 T 19-04-2016 AMED_3598 078885badc2cd537d55f12ae5862f16d 197 SUPERFAMILY SSF48498 89 195 5.11E-6 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7211 f659644c5692db3c3592e1c32a675404 408 SUPERFAMILY SSF48264 29 408 5.37E-81 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00385 P450 superfamily signature 244 261 4.1E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00385 P450 superfamily signature 357 368 4.1E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00385 P450 superfamily signature 348 357 4.1E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00385 P450 superfamily signature 281 292 4.1E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 Pfam PF00067 Cytochrome P450 212 374 8.5E-18 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 Gene3D G3DSA:1.10.630.10 31 408 3.3E-104 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 98 109 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 299 326 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 357 368 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 145 161 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 162 177 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 327 342 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 281 292 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 199 221 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PRINTS PR00359 B-class P450 signature 348 357 7.8E-52 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_7211 f659644c5692db3c3592e1c32a675404 408 PANTHER PTHR11712 29 408 5.0E-85 T 19-04-2016 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 Gene3D G3DSA:1.25.40.20 141 432 3.2E-45 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 168 197 380.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 235 264 500.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 343 372 0.018 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 201 230 0.004 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 383 412 5.4E-6 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SMART SM00248 311 340 1.2 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 Pfam PF12796 Ankyrin repeats (3 copies) 184 258 4.4E-8 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 Pfam PF12796 Ankyrin repeats (3 copies) 267 372 1.1E-9 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SUPERFAMILY SSF48403 140 260 7.28E-41 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 SUPERFAMILY SSF48403 307 437 7.28E-41 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 Pfam PF00023 Ankyrin repeat 384 414 9.3E-7 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 PANTHER PTHR24198 308 421 4.0E-39 T 19-04-2016 AMED_1690 4f1a5fc05ed94600855d81d5e2264cff 438 PANTHER PTHR24198 141 265 4.0E-39 T 19-04-2016 AMED_8822 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 Gene3D G3DSA:1.20.1530.10 7 386 4.5E-129 T 19-04-2016 IPR023171 Na/H antiporter domain AMED_8822 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 PANTHER PTHR30341:SF0 6 395 3.6E-145 T 19-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMED_8822 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 PANTHER PTHR30341 6 395 3.6E-145 T 19-04-2016 AMED_8822 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 8 387 20.634 T 19-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMED_8822 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 12 381 2.2E-102 T 19-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMED_8822 8fc7ee1ae2fa088b9fc8c0023ebbdab7 395 Pfam PF06965 Na+/H+ antiporter 1 10 381 7.6E-130 T 19-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMED_8753 349f1c1d3d7285a02d202ef8dae7f93b 183 Gene3D G3DSA:3.40.50.2020 2 181 5.9E-80 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8753 349f1c1d3d7285a02d202ef8dae7f93b 183 PANTHER PTHR22573 1 181 9.0E-82 T 19-04-2016 AMED_8753 349f1c1d3d7285a02d202ef8dae7f93b 183 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 9 176 8.4E-67 T 19-04-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 AMED_8753 349f1c1d3d7285a02d202ef8dae7f93b 183 Pfam PF00156 Phosphoribosyl transferase domain 11 163 8.2E-23 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_8753 349f1c1d3d7285a02d202ef8dae7f93b 183 SUPERFAMILY SSF53271 5 181 5.77E-53 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8753 349f1c1d3d7285a02d202ef8dae7f93b 183 PANTHER PTHR22573:SF56 1 181 9.0E-82 T 19-04-2016 AMED_5925 7f1a3013dadecdd3705e4e18e3ad3e40 126 SUPERFAMILY SSF52091 6 109 2.35E-8 T 19-04-2016 IPR002645 STAS domain AMED_5925 7f1a3013dadecdd3705e4e18e3ad3e40 126 Gene3D G3DSA:3.30.750.24 7 116 4.3E-11 T 19-04-2016 IPR002645 STAS domain AMED_5925 7f1a3013dadecdd3705e4e18e3ad3e40 126 Pfam PF01740 STAS domain 46 107 2.2E-6 T 19-04-2016 IPR002645 STAS domain AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 452 5.1E-206 T 19-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 SUPERFAMILY SSF143548 17 155 1.94E-46 T 19-04-2016 IPR029009 Allosteric substrate binding domain AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 PANTHER PTHR30182 1 452 4.3E-235 T 19-04-2016 AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 PANTHER PTHR30182:SF1 1 452 4.3E-235 T 19-04-2016 AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 Pfam PF03313 Serine dehydratase alpha chain 186 449 6.8E-103 T 19-04-2016 IPR005130 Serine dehydratase-like, alpha subunit AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 Gene3D G3DSA:3.30.1330.90 11 155 2.2E-54 T 19-04-2016 IPR029009 Allosteric substrate binding domain AMED_1818 1ca532b55cf2852c843dbf0267caf45e 455 Pfam PF03315 Serine dehydratase beta chain 4 154 1.1E-58 T 19-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 AMED_3834 edf2006206920cfdacd0407a2ae0043e 407 SMART SM00507 310 363 2.0E-4 T 19-04-2016 IPR003615 HNH nuclease AMED_3834 edf2006206920cfdacd0407a2ae0043e 407 Pfam PF02720 Domain of unknown function (DUF222) 19 319 4.3E-43 T 19-04-2016 IPR003870 Domain of unknown function DUF222 AMED_3834 edf2006206920cfdacd0407a2ae0043e 407 Pfam PF01844 HNH endonuclease 334 367 9.3E-7 T 19-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AMED_5248 fcec0e58f8f0c190ab92dac14db9e40b 194 Gene3D G3DSA:3.40.430.10 3 192 1.9E-21 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_5248 fcec0e58f8f0c190ab92dac14db9e40b 194 PANTHER PTHR38011:SF2 2 194 2.0E-55 T 19-04-2016 AMED_5248 fcec0e58f8f0c190ab92dac14db9e40b 194 PANTHER PTHR38011 2 194 2.0E-55 T 19-04-2016 AMED_5248 fcec0e58f8f0c190ab92dac14db9e40b 194 SUPERFAMILY SSF53597 2 193 2.36E-21 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_5248 fcec0e58f8f0c190ab92dac14db9e40b 194 Pfam PF01872 RibD C-terminal domain 3 186 1.0E-20 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 Pfam PF03702 Uncharacterised protein family (UPF0075) 28 395 1.5E-105 T 19-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 PANTHER PTHR30605 22 401 6.0E-116 T 19-04-2016 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 PANTHER PTHR30605:SF0 22 401 6.0E-116 T 19-04-2016 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 27 396 32.516 T 19-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 Gene3D G3DSA:3.30.420.40 171 355 1.2E-53 T 19-04-2016 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 SUPERFAMILY SSF53067 99 123 1.29E-9 T 19-04-2016 AMED_1906 ea76910c48ed0375e9eab88909dd048b 420 SUPERFAMILY SSF53067 169 358 1.29E-9 T 19-04-2016 AMED_5434 562779847b2ab9021b32600c793bfd90 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 15 248 2.3E-36 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_5434 562779847b2ab9021b32600c793bfd90 406 Gene3D G3DSA:3.40.47.10 15 262 8.1E-46 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5434 562779847b2ab9021b32600c793bfd90 406 Gene3D G3DSA:3.40.47.10 277 406 3.0E-36 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5434 562779847b2ab9021b32600c793bfd90 406 PANTHER PTHR11712 15 406 1.5E-60 T 19-04-2016 AMED_5434 562779847b2ab9021b32600c793bfd90 406 SUPERFAMILY SSF53901 220 405 3.73E-46 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_5434 562779847b2ab9021b32600c793bfd90 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 258 367 5.6E-21 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_5434 562779847b2ab9021b32600c793bfd90 406 SMART SM00825 Beta-ketoacyl synthase 14 405 1.2E-5 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_5434 562779847b2ab9021b32600c793bfd90 406 SUPERFAMILY SSF53901 15 253 8.23E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4564 021518bd96c69b809dea694c13af3bb8 266 PANTHER PTHR13600 9 177 2.9E-33 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4564 021518bd96c69b809dea694c13af3bb8 266 Gene3D G3DSA:3.40.50.150 69 190 2.0E-10 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4564 021518bd96c69b809dea694c13af3bb8 266 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 8 232 3.7E-44 T 19-04-2016 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4564 021518bd96c69b809dea694c13af3bb8 266 SUPERFAMILY SSF53335 9 258 2.15E-45 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4564 021518bd96c69b809dea694c13af3bb8 266 PANTHER PTHR13600:SF12 9 177 2.9E-33 T 19-04-2016 AMED_4564 021518bd96c69b809dea694c13af3bb8 266 Pfam PF04072 Leucine carboxyl methyltransferase 6 164 2.0E-36 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_2471 66ec30a917e30707c13cf9fc6cb6319e 300 Pfam PF13560 Helix-turn-helix domain 13 74 7.0E-14 T 19-04-2016 AMED_2471 66ec30a917e30707c13cf9fc6cb6319e 300 SUPERFAMILY SSF47413 11 67 7.7E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2471 66ec30a917e30707c13cf9fc6cb6319e 300 PANTHER PTHR10245:SF20 1 283 3.1E-82 T 19-04-2016 AMED_2471 66ec30a917e30707c13cf9fc6cb6319e 300 SMART SM00530 17 72 7.1E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2471 66ec30a917e30707c13cf9fc6cb6319e 300 Gene3D G3DSA:1.10.260.40 6 67 1.9E-11 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2471 66ec30a917e30707c13cf9fc6cb6319e 300 PANTHER PTHR10245 1 283 3.1E-82 T 19-04-2016 AMED_7932 2caf1758d4d8d799379fe343514fd0b4 112 PANTHER PTHR33169:SF13 6 100 3.3E-29 T 19-04-2016 AMED_7932 2caf1758d4d8d799379fe343514fd0b4 112 PANTHER PTHR33169 6 100 3.3E-29 T 19-04-2016 AMED_7932 2caf1758d4d8d799379fe343514fd0b4 112 Gene3D G3DSA:1.10.10.10 13 98 1.4E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7932 2caf1758d4d8d799379fe343514fd0b4 112 SUPERFAMILY SSF46785 6 97 5.66E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7932 2caf1758d4d8d799379fe343514fd0b4 112 Pfam PF03551 Transcriptional regulator PadR-like family 24 87 2.7E-13 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 Pfam PF05787 Bacterial protein of unknown function (DUF839) 94 645 2.6E-161 T 19-04-2016 IPR008557 Protein of unknown function DUF839 AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 Gene3D G3DSA:2.120.10.30 572 594 2.6E-4 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 Gene3D G3DSA:2.120.10.30 363 425 2.6E-4 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 Gene3D G3DSA:2.120.10.30 463 536 2.6E-4 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 PANTHER PTHR35399:SF2 18 681 4.4E-224 T 19-04-2016 AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 PANTHER PTHR35399 18 681 4.4E-224 T 19-04-2016 AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 SUPERFAMILY SSF63829 334 379 3.6E-6 T 19-04-2016 AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 SUPERFAMILY SSF63829 576 623 3.6E-6 T 19-04-2016 AMED_9278 5d9b9714698a32f4f8fec05adea64930 688 SUPERFAMILY SSF63829 413 504 3.6E-6 T 19-04-2016 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 SUPERFAMILY SSF55781 27 168 1.16E-18 T 19-04-2016 IPR029016 GAF domain-like AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 Pfam PF07730 Histidine kinase 176 240 3.0E-9 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 349 4.8E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 368 4.8E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 330 4.8E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 Gene3D G3DSA:3.30.450.40 16 171 7.4E-21 T 19-04-2016 IPR029016 GAF domain-like AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 PANTHER PTHR24421 150 368 5.2E-30 T 19-04-2016 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 SMART SM00065 10 169 3.8E-10 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 Gene3D G3DSA:3.30.565.10 278 368 3.8E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 Gene3D G3DSA:3.30.565.10 221 246 3.8E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 282 368 4.4E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 SUPERFAMILY SSF55874 253 369 2.1E-16 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1465 f28b713eaeab35e5d0b8a85729b999a1 369 Pfam PF13185 GAF domain 22 159 1.0E-19 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_8691 2dbdcfa3b69f46717e6e12e567b1d964 217 Gene3D G3DSA:1.10.3210.10 25 133 1.3E-15 T 19-04-2016 IPR006674 HD domain AMED_8691 2dbdcfa3b69f46717e6e12e567b1d964 217 SUPERFAMILY SSF109604 21 155 7.46E-20 T 19-04-2016 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 PANTHER PTHR30480:SF5 21 585 1.6E-158 T 19-04-2016 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 SUPERFAMILY SSF51445 17 415 2.84E-99 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 421 585 9.5E-12 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 36 379 1.2E-99 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 Gene3D G3DSA:3.20.20.300 43 401 3.0E-105 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 Gene3D G3DSA:3.40.50.1700 407 584 6.9E-13 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 PANTHER PTHR30480 21 585 1.6E-158 T 19-04-2016 AMED_8808 35f6f86624706b7ad4a56b953ff6111e 585 SUPERFAMILY SSF52279 420 585 6.41E-16 T 19-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Gene3D G3DSA:3.90.180.10 14 162 2.4E-32 T 19-04-2016 IPR011032 GroES-like AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Pfam PF00107 Zinc-binding dehydrogenase 167 281 1.6E-19 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 SMART SM00829 13 319 1.7E-12 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Gene3D G3DSA:3.40.50.720 163 268 5.0E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 SUPERFAMILY SSF51735 128 288 2.56E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 SUPERFAMILY SSF50129 11 156 1.73E-31 T 19-04-2016 IPR011032 GroES-like AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 PANTHER PTHR11695:SF605 18 320 1.3E-78 T 19-04-2016 AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 PANTHER PTHR11695 18 320 1.3E-78 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6670 b3d8bb6b1b3cb6e23418ad61606e6d26 321 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 123 1.6E-6 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1647 d82da67195d93286e0431f08d24498cf 587 Gene3D G3DSA:2.60.40.320 188 288 8.7E-19 T 19-04-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 AMED_1647 d82da67195d93286e0431f08d24498cf 587 PANTHER PTHR10066:SF44 15 566 5.1E-217 T 19-04-2016 AMED_1647 d82da67195d93286e0431f08d24498cf 587 Pfam PF00703 Glycosyl hydrolases family 2 238 289 8.5E-8 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_1647 d82da67195d93286e0431f08d24498cf 587 PANTHER PTHR10066 15 566 5.1E-217 T 19-04-2016 AMED_1647 d82da67195d93286e0431f08d24498cf 587 Gene3D G3DSA:3.20.20.80 289 579 6.8E-47 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_1647 d82da67195d93286e0431f08d24498cf 587 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 83 158 1.4E-14 T 19-04-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_1647 d82da67195d93286e0431f08d24498cf 587 SUPERFAMILY SSF51445 287 571 1.51E-61 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1647 d82da67195d93286e0431f08d24498cf 587 SUPERFAMILY SSF49785 29 197 3.12E-48 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1647 d82da67195d93286e0431f08d24498cf 587 Gene3D G3DSA:2.60.120.260 29 187 3.5E-54 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1647 d82da67195d93286e0431f08d24498cf 587 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 330 452 1.8E-6 T 19-04-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMED_1647 d82da67195d93286e0431f08d24498cf 587 SUPERFAMILY SSF49303 202 290 2.88E-12 T 19-04-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 SMART SM00382 281 473 2.3E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 SMART SM00382 31 227 3.4E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 Pfam PF00005 ABC transporter 273 426 4.0E-18 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 Pfam PF00005 ABC transporter 22 171 5.3E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 Gene3D G3DSA:3.40.50.300 4 234 5.6E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 PANTHER PTHR24220 8 381 4.7E-117 T 19-04-2016 AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 SUPERFAMILY SSF52540 5 230 4.22E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 SUPERFAMILY SSF52540 270 478 7.39E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 Gene3D G3DSA:3.40.50.300 270 478 2.6E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3090 dcb31b4d098ea6b47ec2a8027928cb52 499 PANTHER PTHR24220:SF308 8 381 4.7E-117 T 19-04-2016 AMED_3769 3286d5d384a4bf61124a0f8366dc8aae 400 PANTHER PTHR23028 1 368 2.0E-90 T 19-04-2016 AMED_3769 3286d5d384a4bf61124a0f8366dc8aae 400 Pfam PF01757 Acyltransferase family 21 343 5.3E-28 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_3769 3286d5d384a4bf61124a0f8366dc8aae 400 PANTHER PTHR23028:SF53 1 368 2.0E-90 T 19-04-2016 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 SUPERFAMILY SSF51905 29 341 4.75E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 SUPERFAMILY SSF51905 439 481 4.75E-41 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 Gene3D G3DSA:3.50.50.60 426 480 2.5E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 Gene3D G3DSA:3.50.50.60 31 111 2.5E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 Gene3D G3DSA:3.50.50.60 216 323 2.5E-28 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 PANTHER PTHR10742:SF243 33 506 1.1E-142 T 19-04-2016 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 Pfam PF01593 Flavin containing amine oxidoreductase 39 479 2.1E-36 T 19-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMED_4070 9279f2b6988dce52c7c91366861df4c0 513 PANTHER PTHR10742 33 506 1.1E-142 T 19-04-2016 AMED_8973 878f97eb460a0a76afe3af97599205c5 397 SUPERFAMILY SSF53850 37 364 5.67E-26 T 19-04-2016 AMED_8973 878f97eb460a0a76afe3af97599205c5 397 Gene3D G3DSA:3.40.190.10 2 140 2.5E-13 T 19-04-2016 AMED_8973 878f97eb460a0a76afe3af97599205c5 397 Gene3D G3DSA:3.40.190.10 305 350 2.5E-13 T 19-04-2016 AMED_8973 878f97eb460a0a76afe3af97599205c5 397 PANTHER PTHR30006 39 339 5.8E-13 T 19-04-2016 AMED_8973 878f97eb460a0a76afe3af97599205c5 397 Pfam PF13416 Bacterial extracellular solute-binding protein 54 344 9.5E-31 T 19-04-2016 AMED_8973 878f97eb460a0a76afe3af97599205c5 397 Gene3D G3DSA:3.40.190.10 169 304 4.8E-6 T 19-04-2016 AMED_6895 0c8deaf01c813c36b0c7d0729caf88aa 244 Pfam PF02517 CAAX protease self-immunity 122 234 5.2E-12 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 Pfam PF07519 Tannase and feruloyl esterase 65 533 3.4E-104 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 PANTHER PTHR33938 63 533 3.4E-84 T 19-04-2016 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 PANTHER PTHR33938:SF6 63 533 3.4E-84 T 19-04-2016 AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 Gene3D G3DSA:3.40.50.1820 407 471 2.7E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 Gene3D G3DSA:3.40.50.1820 125 225 2.7E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 SUPERFAMILY SSF53474 83 237 7.85E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 SUPERFAMILY SSF53474 357 383 7.85E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4001 f87c000b63d4cfbd4e1033f721d39dae 534 SUPERFAMILY SSF53474 411 473 7.85E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 SUPERFAMILY SSF50193 2 122 4.32E-50 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.1E-56 T 19-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 Pfam PF00238 Ribosomal protein L14p/L23e 2 122 1.4E-53 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 19-04-2016 IPR019972 Ribosomal protein L14P, conserved site AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.721 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 PANTHER PTHR11761 2 122 7.7E-75 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 SMART SM01374 1 122 5.3E-86 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMED_0687 b86c265ef0e347983f58eb085b80e6a5 122 Gene3D G3DSA:2.40.150.20 2 122 8.4E-54 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMED_1666 09a8a141a1ebaab17b215c3938e2a8c3 274 Pfam PF10708 Protein of unknown function (DUF2510) 8 40 2.0E-9 T 19-04-2016 IPR018929 Domain of unknown function DUF2510 AMED_1666 09a8a141a1ebaab17b215c3938e2a8c3 274 SUPERFAMILY SSF54518 100 266 7.06E-10 T 19-04-2016 IPR025659 Tubby C-terminal-like domain AMED_1666 09a8a141a1ebaab17b215c3938e2a8c3 274 PANTHER PTHR23248 1 266 1.1E-17 T 19-04-2016 IPR005552 Scramblase AMED_1666 09a8a141a1ebaab17b215c3938e2a8c3 274 PANTHER PTHR23248:SF9 1 266 1.1E-17 T 19-04-2016 AMED_1666 09a8a141a1ebaab17b215c3938e2a8c3 274 Pfam PF03803 Scramblase 93 267 2.7E-17 T 19-04-2016 IPR005552 Scramblase AMED_8018 65971789dd72012377d31db763c237d6 1087 PANTHER PTHR22916 463 578 2.2E-29 T 19-04-2016 AMED_8018 65971789dd72012377d31db763c237d6 1087 SUPERFAMILY SSF53448 15 238 8.84E-33 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8018 65971789dd72012377d31db763c237d6 1087 Pfam PF00535 Glycosyl transferase family 2 18 142 5.9E-15 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_8018 65971789dd72012377d31db763c237d6 1087 PANTHER PTHR22916:SF29 463 578 2.2E-29 T 19-04-2016 AMED_8018 65971789dd72012377d31db763c237d6 1087 PANTHER PTHR22916:SF29 4 416 2.2E-29 T 19-04-2016 AMED_8018 65971789dd72012377d31db763c237d6 1087 Gene3D G3DSA:3.90.550.10 18 238 3.7E-29 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8018 65971789dd72012377d31db763c237d6 1087 PANTHER PTHR22916 4 416 2.2E-29 T 19-04-2016 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 PANTHER PTHR30562:SF1 1 457 3.7E-249 T 19-04-2016 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 SMART SM00278 598 617 0.15 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 SMART SM00278 566 585 16.0 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF01541 GIY-YIG catalytic domain 1 73 2.2E-9 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF14520 Helix-hairpin-helix domain 567 618 1.2E-9 T 19-04-2016 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:3.40.1440.10 1 76 3.5E-9 T 19-04-2016 IPR027299 GIY-YIG domain AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 383 552 1.0E-46 T 19-04-2016 IPR001162 UvrC family homology region AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:1.10.150.20 565 618 3.1E-20 T 19-04-2016 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Gene3D G3DSA:4.10.860.10 168 229 7.0E-20 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 PANTHER PTHR30562 478 618 3.7E-249 T 19-04-2016 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 SUPERFAMILY SSF46600 175 228 3.01E-14 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 SUPERFAMILY SSF47781 507 619 1.87E-23 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 SMART SM00465 1 80 6.9E-17 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 PANTHER PTHR30562:SF1 478 618 3.7E-249 T 19-04-2016 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 SUPERFAMILY SSF82771 1 82 7.45E-21 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 1 599 3.1E-147 T 19-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Pfam PF02151 UvrB/uvrC motif 190 223 2.8E-9 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 617 28.578 T 19-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AMED_2778 3111e6f8772063275da4a5c1badd6c87 632 PANTHER PTHR30562 1 457 3.7E-249 T 19-04-2016 AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 Pfam PF00005 ABC transporter 22 160 1.6E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 SMART SM00382 31 215 1.2E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 PANTHER PTHR24220:SF414 8 219 3.4E-84 T 19-04-2016 AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 PANTHER PTHR24220 8 219 3.4E-84 T 19-04-2016 AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 SUPERFAMILY SSF52540 4 220 6.25E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5406 f172d1d70e58e3ef963c184b89860b53 283 Gene3D G3DSA:3.40.50.300 3 221 2.2E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2867 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 PANTHER PTHR10566:SF77 96 246 3.9E-38 T 19-04-2016 AMED_2867 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 Gene3D G3DSA:3.40.710.10 13 383 6.1E-83 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2867 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 PANTHER PTHR10566 96 246 3.9E-38 T 19-04-2016 AMED_2867 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 Pfam PF00144 Beta-lactamase 23 374 1.7E-66 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_2867 6fb6e0fc23ef41d02a77c7f7b6f9097a 386 SUPERFAMILY SSF56601 12 380 4.86E-73 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5832 69dd244c33343e8c8ede834db86c1250 139 Pfam PF04075 Domain of unknown function (DUF385) 20 107 3.8E-7 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_5832 69dd244c33343e8c8ede834db86c1250 139 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 19 104 1.6E-14 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 SMART SM00344 185 290 0.004 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 SUPERFAMILY SSF46785 18 61 5.58E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 SUPERFAMILY SSF54909 76 153 3.49E-7 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 Gene3D G3DSA:1.10.10.10 190 227 1.9E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 Pfam PF01037 Lrp/AsnC ligand binding domain 83 146 4.0E-7 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 PANTHER PTHR30154 8 173 1.5E-15 T 19-04-2016 AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 Pfam PF13404 AsnC-type helix-turn-helix domain 18 57 3.2E-12 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 Pfam PF13404 AsnC-type helix-turn-helix domain 190 225 4.8E-8 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 Gene3D G3DSA:1.10.10.10 20 60 2.7E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4424 58e7e5d12cb493236b52973c7bbeb3d4 345 Gene3D G3DSA:3.30.70.920 77 150 1.2E-6 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.4E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 SUPERFAMILY SSF51735 11 248 9.06E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PANTHER PTHR24322:SF333 13 141 3.1E-62 T 19-04-2016 AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PANTHER PTHR24322:SF333 157 189 3.1E-62 T 19-04-2016 AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 Gene3D G3DSA:3.40.50.720 12 226 2.0E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PANTHER PTHR24322 13 141 3.1E-62 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 PANTHER PTHR24322 157 189 3.1E-62 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_0229 746d68aa1ade2a56c3023789ff75b0fb 251 Pfam PF00106 short chain dehydrogenase 12 199 1.8E-25 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5368 2472910ed9d9f6025da7bae28e07005e 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 299 9.2E-10 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5368 2472910ed9d9f6025da7bae28e07005e 316 Gene3D G3DSA:1.10.3720.10 21 302 8.5E-40 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5368 2472910ed9d9f6025da7bae28e07005e 316 PANTHER PTHR30193:SF2 1 316 7.4E-104 T 19-04-2016 AMED_5368 2472910ed9d9f6025da7bae28e07005e 316 SUPERFAMILY SSF161098 76 301 1.96E-39 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5368 2472910ed9d9f6025da7bae28e07005e 316 PANTHER PTHR30193 1 316 7.4E-104 T 19-04-2016 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 SMART SM00354 17 87 3.7E-12 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 SUPERFAMILY SSF53822 84 344 2.36E-48 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 PANTHER PTHR30146 18 344 1.3E-76 T 19-04-2016 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 Gene3D G3DSA:3.40.50.2300 184 321 1.9E-39 T 19-04-2016 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 Pfam PF13377 Periplasmic binding protein-like domain 181 340 3.6E-35 T 19-04-2016 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 Gene3D G3DSA:1.10.260.40 18 69 6.9E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 Gene3D G3DSA:3.40.50.2300 70 183 2.5E-20 T 19-04-2016 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 SUPERFAMILY SSF47413 17 75 1.39E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_7256 ec342ced17fe3a7fc637a610a07bfde4 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 19 64 5.5E-9 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 Gene3D G3DSA:1.10.10.60 12 64 2.0E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 SUPERFAMILY SSF46689 12 81 2.24E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 PANTHER PTHR30055:SF54 6 208 7.9E-30 T 19-04-2016 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 PANTHER PTHR30055 6 208 7.9E-30 T 19-04-2016 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 Gene3D G3DSA:1.10.357.10 65 201 1.7E-13 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 3.9E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 3.9E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4382 36403d838ec9147e0acdf12971a0e119 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 2.1E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0396 3d83175fc07c11c8326ba0ab9a5c6dbf 287 PANTHER PTHR10245 1 280 1.9E-43 T 19-04-2016 AMED_0396 3d83175fc07c11c8326ba0ab9a5c6dbf 287 PANTHER PTHR10245:SF7 1 280 1.9E-43 T 19-04-2016 AMED_0396 3d83175fc07c11c8326ba0ab9a5c6dbf 287 SMART SM00530 15 70 3.9E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0396 3d83175fc07c11c8326ba0ab9a5c6dbf 287 SUPERFAMILY SSF47413 7 68 2.17E-11 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0396 3d83175fc07c11c8326ba0ab9a5c6dbf 287 Pfam PF13560 Helix-turn-helix domain 11 73 3.6E-15 T 19-04-2016 AMED_0396 3d83175fc07c11c8326ba0ab9a5c6dbf 287 Gene3D G3DSA:1.10.260.40 3 67 4.1E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6195 fe9c7ceb6d8536f3007bbd6311a39d55 220 Pfam PF10067 Predicted membrane protein (DUF2306) 54 202 8.0E-41 T 19-04-2016 IPR018750 Protein of unknown function DUF2306, membrane AMED_8608 c733e8ea93b967430b8f6efae02bf988 284 Gene3D G3DSA:3.20.20.140 7 17 5.4E-46 T 19-04-2016 AMED_8608 c733e8ea93b967430b8f6efae02bf988 284 Gene3D G3DSA:3.20.20.140 49 281 5.4E-46 T 19-04-2016 AMED_8608 c733e8ea93b967430b8f6efae02bf988 284 PANTHER PTHR21240 6 279 6.4E-21 T 19-04-2016 AMED_8608 c733e8ea93b967430b8f6efae02bf988 284 SUPERFAMILY SSF51556 6 281 1.11E-51 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8608 c733e8ea93b967430b8f6efae02bf988 284 Pfam PF04909 Amidohydrolase 90 279 4.1E-34 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_0561 65ac884c13822c188823fe05d3e30a88 182 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 179 2.0E-71 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0561 65ac884c13822c188823fe05d3e30a88 182 PANTHER PTHR21047 7 179 2.0E-60 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0561 65ac884c13822c188823fe05d3e30a88 182 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 8 176 6.1E-57 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0561 65ac884c13822c188823fe05d3e30a88 182 Gene3D G3DSA:2.60.120.10 8 179 3.4E-62 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_0561 65ac884c13822c188823fe05d3e30a88 182 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 8 177 5.3E-48 T 19-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMED_0561 65ac884c13822c188823fe05d3e30a88 182 SUPERFAMILY SSF51182 8 179 1.26E-57 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 Gene3D G3DSA:3.50.50.60 3 171 7.0E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 Gene3D G3DSA:3.50.50.60 279 363 7.0E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PANTHER PTHR13789 3 364 4.6E-75 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 2.0E-40 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 306 322 2.0E-40 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 2.0E-40 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 358 2.0E-40 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 306 2.0E-40 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 324 342 2.0E-40 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 Pfam PF01494 FAD binding domain 3 356 7.2E-70 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 PANTHER PTHR13789:SF90 3 364 4.6E-75 T 19-04-2016 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 SUPERFAMILY SSF51905 3 166 1.16E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4676 8bd1f4b332f1527b31b3e38723f704a1 507 SUPERFAMILY SSF51905 278 368 1.16E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 PANTHER PTHR10357 483 594 8.0E-274 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 PANTHER PTHR10357 28 444 8.0E-274 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:3.90.400.10 149 216 1.2E-24 T 19-04-2016 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:2.60.40.1180 516 592 2.3E-11 T 19-04-2016 IPR013780 Glycosyl hydrolase, all-beta AMED_2597 0d87bc44533b16d686ef4f6295032702 602 SUPERFAMILY SSF51445 397 504 5.37E-129 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2597 0d87bc44533b16d686ef4f6295032702 602 SUPERFAMILY SSF51445 47 370 5.37E-129 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2597 0d87bc44533b16d686ef4f6295032702 602 PANTHER PTHR10357:SF164 483 594 8.0E-274 T 19-04-2016 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 PANTHER PTHR10357:SF164 28 444 8.0E-274 T 19-04-2016 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 SMART SM00642 57 459 1.8E-112 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:3.20.20.80 51 148 5.3E-110 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:3.20.20.80 486 500 5.3E-110 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Gene3D G3DSA:3.20.20.80 224 453 5.3E-110 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Pfam PF00128 Alpha amylase, catalytic domain 72 428 7.8E-73 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 Pfam PF16657 Maltogenic Amylase, C-terminal domain 507 589 1.4E-20 T 19-04-2016 IPR032091 Maltogenic Amylase, C-terminal AMED_2597 0d87bc44533b16d686ef4f6295032702 602 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 48 592 8.8E-285 T 19-04-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 AMED_2597 0d87bc44533b16d686ef4f6295032702 602 SUPERFAMILY SSF51011 510 592 2.56E-16 T 19-04-2016 AMED_5329 c8c856086234f82da4a289f21a2b2387 503 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 59 503 7.0E-119 T 19-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AMED_5329 c8c856086234f82da4a289f21a2b2387 503 PANTHER PTHR30576:SF4 44 503 5.5E-166 T 19-04-2016 AMED_5329 c8c856086234f82da4a289f21a2b2387 503 PANTHER PTHR30576 44 503 5.5E-166 T 19-04-2016 AMED_5329 c8c856086234f82da4a289f21a2b2387 503 Pfam PF02397 Bacterial sugar transferase 310 497 8.1E-57 T 19-04-2016 IPR003362 Bacterial sugar transferase AMED_8850 e463f39424285d87f0a677227d802881 335 Gene3D G3DSA:3.40.50.300 19 241 1.1E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8850 e463f39424285d87f0a677227d802881 335 SUPERFAMILY SSF52540 18 238 3.81E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8850 e463f39424285d87f0a677227d802881 335 Pfam PF02374 Anion-transporting ATPase 17 176 4.5E-20 T 19-04-2016 IPR025723 Anion-transporting ATPase-like domain AMED_8850 e463f39424285d87f0a677227d802881 335 PANTHER PTHR10803 8 241 4.1E-105 T 19-04-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 AMED_8850 e463f39424285d87f0a677227d802881 335 PANTHER PTHR10803:SF6 8 241 4.1E-105 T 19-04-2016 AMED_4184 b2ef2435ab4ac8e2c9ef872983025767 264 Pfam PF13649 Methyltransferase domain 47 138 3.4E-17 T 19-04-2016 AMED_4184 b2ef2435ab4ac8e2c9ef872983025767 264 PANTHER PTHR10108 10 141 1.5E-23 T 19-04-2016 AMED_4184 b2ef2435ab4ac8e2c9ef872983025767 264 Gene3D G3DSA:3.40.50.150 8 152 1.6E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4184 b2ef2435ab4ac8e2c9ef872983025767 264 SUPERFAMILY SSF53335 12 168 4.11E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6852 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 PANTHER PTHR35446 45 172 9.2E-19 T 19-04-2016 AMED_6852 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 96 3.1E-6 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_6852 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 44 83 2.4E-8 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_6852 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 Gene3D G3DSA:1.20.1290.10 42 157 1.5E-30 T 19-04-2016 IPR029032 AhpD-like AMED_6852 47f6dc3b1a2b7cfba590ad3e9dea8f76 181 SUPERFAMILY SSF69118 11 159 8.78E-39 T 19-04-2016 IPR029032 AhpD-like AMED_9171 b3fa9c8ba2867f51344b3e2baf9d5e3c 149 SUPERFAMILY SSF55729 17 129 3.9E-17 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9171 b3fa9c8ba2867f51344b3e2baf9d5e3c 149 Gene3D G3DSA:3.40.630.30 17 128 1.3E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9171 b3fa9c8ba2867f51344b3e2baf9d5e3c 149 Pfam PF13673 Acetyltransferase (GNAT) domain 37 128 2.6E-7 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 SUPERFAMILY SSF53187 238 530 3.04E-49 T 19-04-2016 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 SMART SM00631 240 537 1.7E-31 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 PANTHER PTHR11705:SF56 193 528 1.3E-51 T 19-04-2016 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 Pfam PF00246 Zinc carboxypeptidase 250 525 1.1E-40 T 19-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 Gene3D G3DSA:3.40.630.10 238 527 1.2E-55 T 19-04-2016 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 Gene3D G3DSA:2.60.120.380 691 747 9.0E-6 T 19-04-2016 AMED_3357 ba82b2d6d5cca268951e9f3f328cf2b1 823 PANTHER PTHR11705 193 528 1.3E-51 T 19-04-2016 AMED_9224 7d6587b9d667bcc12e7e22a11af197a5 90 Pfam PF03852 DNA mismatch endonuclease Vsr 8 28 4.5E-9 T 19-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AMED_9224 7d6587b9d667bcc12e7e22a11af197a5 90 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 5 75 4.6E-33 T 19-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AMED_9224 7d6587b9d667bcc12e7e22a11af197a5 90 SUPERFAMILY SSF52980 6 87 2.63E-28 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_9224 7d6587b9d667bcc12e7e22a11af197a5 90 Gene3D G3DSA:3.40.960.10 5 83 5.1E-32 T 19-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 SUPERFAMILY SSF75217 46 211 4.19E-44 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 Gene3D G3DSA:3.30.1330.30 1 54 1.2E-10 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 PANTHER PTHR12029 1 209 6.8E-54 T 19-04-2016 AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 Pfam PF00588 SpoU rRNA Methylase family 69 209 2.4E-39 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 1 54 4.7E-7 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 Gene3D G3DSA:3.40.1280.10 65 211 3.8E-50 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMED_6053 35fa13fcd57d1d524cbdbe033ef8ac78 217 SUPERFAMILY SSF55315 3 54 2.47E-6 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMED_3595 3f22df9ef9ba987b06ce6860bcc95b0f 176 SUPERFAMILY SSF48452 3 150 1.29E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3595 3f22df9ef9ba987b06ce6860bcc95b0f 176 Pfam PF13424 Tetratricopeptide repeat 3 67 5.2E-9 T 19-04-2016 AMED_3595 3f22df9ef9ba987b06ce6860bcc95b0f 176 PANTHER PTHR10098 3 149 7.9E-13 T 19-04-2016 AMED_3595 3f22df9ef9ba987b06ce6860bcc95b0f 176 Gene3D G3DSA:1.25.40.10 3 166 2.7E-18 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 SUPERFAMILY SSF52743 516 631 7.59E-34 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 SUPERFAMILY SSF52743 179 358 7.59E-34 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 571 581 - T 19-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 Gene3D G3DSA:3.40.50.200 134 354 1.4E-27 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 Gene3D G3DSA:3.40.50.200 531 631 1.4E-27 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 PRINTS PR00723 Subtilisin serine protease family (S8) signature 570 586 5.3E-7 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 PRINTS PR00723 Subtilisin serine protease family (S8) signature 202 221 5.3E-7 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_6932 e6c7ceff7b8d0a26515548bd2e5a1320 637 Pfam PF00082 Subtilase family 253 621 2.3E-18 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 Gene3D G3DSA:3.50.50.60 134 214 5.4E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 Gene3D G3DSA:3.50.50.60 3 71 5.4E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 Gene3D G3DSA:3.50.50.60 351 394 5.4E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 PANTHER PTHR13847:SF191 4 394 1.8E-129 T 19-04-2016 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 PANTHER PTHR13847 4 394 1.8E-129 T 19-04-2016 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 Gene3D G3DSA:3.30.9.10 85 133 1.4E-7 T 19-04-2016 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 Pfam PF01266 FAD dependent oxidoreductase 4 390 5.3E-67 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMED_0195 3c81350147fa49c3630d60aeeafd41b9 395 SUPERFAMILY SSF51905 4 282 1.38E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2388 b88bc89aa05f74ef8d27e425b472ec3b 167 SUPERFAMILY SSF46785 15 85 2.73E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2388 b88bc89aa05f74ef8d27e425b472ec3b 167 Gene3D G3DSA:1.10.10.10 15 76 2.0E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2388 b88bc89aa05f74ef8d27e425b472ec3b 167 Pfam PF12840 Helix-turn-helix domain 14 70 1.2E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 SUPERFAMILY SSF110221 361 517 3.14E-49 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 PANTHER PTHR39447 33 517 1.8E-287 T 19-04-2016 AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 41 355 4.8E-154 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 Gene3D G3DSA:2.60.120.200 39 357 1.3E-157 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 PANTHER PTHR39447:SF2 33 517 1.8E-287 T 19-04-2016 AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 SUPERFAMILY SSF49899 40 357 1.31E-152 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 371 512 4.1E-52 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_3066 67efbbee7b610e392c86d9082fdbc4a2 518 Gene3D G3DSA:2.80.10.50 364 517 8.7E-44 T 19-04-2016 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.3E-53 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 58 87 4.2E-38 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 42 53 4.2E-38 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 24 36 4.2E-38 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 PRINTS PR00060 Ribosomal protein L16 signature 88 117 4.2E-38 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 PANTHER PTHR12220 1 135 3.3E-64 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.07 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 Gene3D G3DSA:3.90.1170.10 23 136 8.6E-52 T 19-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.5E-46 T 19-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 19-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0684 e5339b905cbb9dab924da2e12918c167 139 SUPERFAMILY SSF54686 2 136 8.77E-55 T 19-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMED_5475 35ac642ca1ee9af200342725bc837797 339 PIRSF PIRSF000267 1 333 1.4E-123 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_5475 35ac642ca1ee9af200342725bc837797 339 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 3 204 2.2E-82 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_5475 35ac642ca1ee9af200342725bc837797 339 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 3 319 2.1E-113 T 19-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMED_5475 35ac642ca1ee9af200342725bc837797 339 PANTHER PTHR30365 1 328 7.1E-130 T 19-04-2016 AMED_5475 35ac642ca1ee9af200342725bc837797 339 PANTHER PTHR30365:SF6 1 328 7.1E-130 T 19-04-2016 AMED_4300 23c4b790e53fefca63603fb41626612a 128 SUPERFAMILY SSF52091 38 108 1.84E-12 T 19-04-2016 IPR002645 STAS domain AMED_4300 23c4b790e53fefca63603fb41626612a 128 Pfam PF13466 STAS domain 45 109 8.0E-11 T 19-04-2016 IPR002645 STAS domain AMED_4300 23c4b790e53fefca63603fb41626612a 128 Gene3D G3DSA:3.30.750.24 39 108 2.5E-13 T 19-04-2016 IPR002645 STAS domain AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 Gene3D G3DSA:1.20.1250.20 237 447 3.5E-17 T 19-04-2016 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 Gene3D G3DSA:1.20.1250.20 37 224 1.5E-17 T 19-04-2016 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 Pfam PF07690 Major Facilitator Superfamily 53 363 9.5E-25 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 PANTHER PTHR23515:SF6 385 457 9.3E-216 T 19-04-2016 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 PANTHER PTHR23515:SF6 15 363 9.3E-216 T 19-04-2016 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 PANTHER PTHR23515 385 457 9.3E-216 T 19-04-2016 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 PANTHER PTHR23515 15 363 9.3E-216 T 19-04-2016 AMED_1123 3ae35763d7eb05c1f508095c49b3f42f 463 SUPERFAMILY SSF103473 22 446 4.71E-51 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3257 8c897a6f7528dc47ac580809aae85ae6 234 Gene3D G3DSA:3.40.50.1820 2 231 4.6E-36 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3257 8c897a6f7528dc47ac580809aae85ae6 234 SUPERFAMILY SSF53474 2 228 3.19E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3257 8c897a6f7528dc47ac580809aae85ae6 234 PANTHER PTHR10992 4 232 1.2E-24 T 19-04-2016 AMED_3257 8c897a6f7528dc47ac580809aae85ae6 234 Pfam PF12697 Alpha/beta hydrolase family 6 224 1.1E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_3257 8c897a6f7528dc47ac580809aae85ae6 234 PANTHER PTHR10992:SF832 4 232 1.2E-24 T 19-04-2016 AMED_6351 b4f7c9116264d7f2fd2c5284b23fdcee 235 Pfam PF13398 Peptidase M50B-like 24 227 1.9E-38 T 19-04-2016 AMED_6351 b4f7c9116264d7f2fd2c5284b23fdcee 235 Gene3D G3DSA:3.40.390.10 24 75 6.3E-4 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 Pfam PF00120 Glutamine synthetase, catalytic domain 115 441 3.8E-103 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 Gene3D G3DSA:3.10.20.70 5 117 6.3E-8 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 SUPERFAMILY SSF55931 115 446 1.47E-101 T 19-04-2016 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 PANTHER PTHR20852 1 448 5.7E-191 T 19-04-2016 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 SUPERFAMILY SSF54368 3 113 2.09E-15 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 Gene3D G3DSA:3.30.590.10 118 435 4.1E-99 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 PANTHER PTHR20852:SF35 1 448 5.7E-191 T 19-04-2016 AMED_1807 8d64a485c468672d16cdb42b11632ac5 448 SMART SM01230 114 366 3.6E-98 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_0171 a77d46cf9841f70cb181601030c4d827 267 Gene3D G3DSA:2.40.50.90 63 125 6.1E-5 T 19-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold AMED_0171 a77d46cf9841f70cb181601030c4d827 267 SMART SM00894 230 266 1.9E-18 T 19-04-2016 IPR008613 Excalibur calcium-binding domain AMED_0171 a77d46cf9841f70cb181601030c4d827 267 SUPERFAMILY SSF50199 65 178 2.62E-8 T 19-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold AMED_0171 a77d46cf9841f70cb181601030c4d827 267 Pfam PF05901 Excalibur calcium-binding domain 231 266 7.8E-14 T 19-04-2016 IPR008613 Excalibur calcium-binding domain AMED_4593 5e35d4eb680c678fe99230aeb11dff17 333 Pfam PF01145 SPFH domain / Band 7 family 24 198 4.1E-15 T 19-04-2016 IPR001107 Band 7 domain AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 353 6.4E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 212 226 6.4E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 329 6.4E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 372 6.4E-9 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 SUPERFAMILY SSF47384 137 219 4.51E-17 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 SMART SM00304 100 153 3.2E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 264 373 1.3E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 Pfam PF00512 His Kinase A (phospho-acceptor) domain 155 220 1.1E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 PANTHER PTHR24423 94 372 6.8E-58 T 19-04-2016 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 SMART SM00388 154 221 6.9E-16 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 SUPERFAMILY SSF55874 211 373 1.72E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 SUPERFAMILY SSF158472 101 150 4.58E-7 T 19-04-2016 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 Pfam PF00672 HAMP domain 82 150 1.2E-13 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 SMART SM00387 264 374 2.5E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 Gene3D G3DSA:1.10.287.130 144 217 3.2E-14 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMED_2626 58ec251fe5e50ff6963374be0f20f68a 374 Gene3D G3DSA:3.30.565.10 227 373 5.8E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0500 e5c20f07bdae9ad1a474e6cd62d85b4e 445 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 196 355 2.2E-11 T 19-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_0500 e5c20f07bdae9ad1a474e6cd62d85b4e 445 Gene3D G3DSA:3.40.50.300 194 429 5.3E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0500 e5c20f07bdae9ad1a474e6cd62d85b4e 445 PANTHER PTHR13696 135 445 7.0E-74 T 19-04-2016 AMED_0500 e5c20f07bdae9ad1a474e6cd62d85b4e 445 PANTHER PTHR13696:SF1 135 445 7.0E-74 T 19-04-2016 AMED_0500 e5c20f07bdae9ad1a474e6cd62d85b4e 445 SUPERFAMILY SSF52540 194 431 2.41E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 SUPERFAMILY SSF46785 6 72 1.15E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 Gene3D G3DSA:1.10.10.10 6 73 2.8E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 139 291 3.6E-19 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 SUPERFAMILY SSF48498 146 293 3.0E-21 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 SUPERFAMILY SSF46689 73 135 6.16E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 Pfam PF00440 Bacterial regulatory proteins, tetR family 83 127 1.5E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 SMART SM00345 9 68 4.2E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 Gene3D G3DSA:1.10.357.10 132 292 2.6E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 PANTHER PTHR30055 68 179 4.2E-25 T 19-04-2016 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 Gene3D G3DSA:1.10.10.60 74 131 1.9E-24 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 PANTHER PTHR30055:SF93 68 179 4.2E-25 T 19-04-2016 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 1.9E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 PRINTS PR00400 Tetracycline repressor protein signature 95 118 8.2E-5 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_1621 744fc78b7f3b16a55c1d3907dc56c461 295 PRINTS PR00400 Tetracycline repressor protein signature 274 288 8.2E-5 T 19-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 AMED_1208 1e1168f005fb4b9c3c8b8e7ee8f0bbf0 282 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 20 246 8.1E-58 T 19-04-2016 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related AMED_2727 cf1a11df87f16d555ce600399b455c06 85 Gene3D G3DSA:3.30.1360.60 10 85 2.0E-26 T 19-04-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AMED_2727 cf1a11df87f16d555ce600399b455c06 85 SUPERFAMILY SSF55604 13 84 2.62E-20 T 19-04-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AMED_2727 cf1a11df87f16d555ce600399b455c06 85 PANTHER PTHR30009 3 85 4.2E-25 T 19-04-2016 AMED_2727 cf1a11df87f16d555ce600399b455c06 85 PANTHER PTHR30009:SF4 3 85 4.2E-25 T 19-04-2016 AMED_2727 cf1a11df87f16d555ce600399b455c06 85 Pfam PF00367 phosphotransferase system, EIIB 14 46 6.6E-13 T 19-04-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AMED_2727 cf1a11df87f16d555ce600399b455c06 85 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 7 71 2.2E-17 T 19-04-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AMED_7708 b23422231073a8689999087cfe5c5690 283 SUPERFAMILY SSF54001 3 252 1.54E-43 T 19-04-2016 AMED_7708 b23422231073a8689999087cfe5c5690 283 Gene3D G3DSA:3.30.2140.10 186 267 1.4E-34 T 19-04-2016 AMED_7708 b23422231073a8689999087cfe5c5690 283 Gene3D G3DSA:3.30.2140.10 3 84 1.4E-34 T 19-04-2016 AMED_7708 b23422231073a8689999087cfe5c5690 283 PANTHER PTHR11786 5 273 1.7E-29 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_7708 b23422231073a8689999087cfe5c5690 283 Pfam PF00797 N-acetyltransferase 23 228 4.3E-36 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_7708 b23422231073a8689999087cfe5c5690 283 PANTHER PTHR11786:SF0 5 273 1.7E-29 T 19-04-2016 AMED_0731 f85b7f21917f8d84c3bfd0bf3a944cff 86 Pfam PF00550 Phosphopantetheine attachment site 9 74 1.4E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0731 f85b7f21917f8d84c3bfd0bf3a944cff 86 SUPERFAMILY SSF47336 6 81 1.05E-11 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0731 f85b7f21917f8d84c3bfd0bf3a944cff 86 Gene3D G3DSA:1.10.1200.10 8 81 1.1E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_9297 a758aa4ab299206d1e60212e69e3aca8 171 PANTHER PTHR10302 7 171 1.0E-30 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_9297 a758aa4ab299206d1e60212e69e3aca8 171 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 5 121 1.6E-33 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_9297 a758aa4ab299206d1e60212e69e3aca8 171 Pfam PF00436 Single-strand binding protein family 7 106 5.1E-30 T 19-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 AMED_9297 a758aa4ab299206d1e60212e69e3aca8 171 SUPERFAMILY SSF50249 6 171 1.86E-46 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_9297 a758aa4ab299206d1e60212e69e3aca8 171 Hamap MF_00984 Single-stranded DNA-binding protein. 4 113 30.977 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMED_9297 a758aa4ab299206d1e60212e69e3aca8 171 Gene3D G3DSA:2.40.50.140 4 117 1.9E-41 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8097 aec1822a0984b94b2aac90c55a7cd218 102 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 10 96 6.1E-11 T 19-04-2016 IPR022536 ESX-1 secretion-associated protein EspC AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 SUPERFAMILY SSF50370 283 421 1.37E-36 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 SMART SM00458 285 423 4.4E-7 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 Pfam PF06283 Trehalose utilisation 39 249 5.1E-26 T 19-04-2016 IPR029010 ThuA-like domain AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 Gene3D G3DSA:3.40.50.880 32 286 2.2E-17 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 Pfam PF00652 Ricin-type beta-trefoil lectin domain 287 420 6.8E-19 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 SUPERFAMILY SSF52317 32 275 7.78E-20 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_1296 fbe91168a61d577b1e8b7e8315c9d752 423 Gene3D G3DSA:2.80.10.50 287 422 1.8E-32 T 19-04-2016 AMED_8629 09f4666766aa925ba3ac2cb82f5d3259 105 Pfam PF00741 Gas vesicle protein 11 48 3.3E-13 T 19-04-2016 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 AMED_8629 09f4666766aa925ba3ac2cb82f5d3259 105 PANTHER PTHR35344:SF3 9 64 1.7E-23 T 19-04-2016 AMED_8629 09f4666766aa925ba3ac2cb82f5d3259 105 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 11 25 - T 19-04-2016 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 AMED_8629 09f4666766aa925ba3ac2cb82f5d3259 105 Hamap MF_00576 Gas vesicle structural protein [gvpA]. 3 78 19.52 T 19-04-2016 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 AMED_8629 09f4666766aa925ba3ac2cb82f5d3259 105 PANTHER PTHR35344 9 64 1.7E-23 T 19-04-2016 AMED_6935 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 Gene3D G3DSA:3.40.1130.10 43 242 2.0E-18 T 19-04-2016 AMED_6935 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 PANTHER PTHR10434 35 248 4.7E-58 T 19-04-2016 AMED_6935 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 Pfam PF01553 Acyltransferase 53 181 2.3E-23 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_6935 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 PANTHER PTHR10434:SF21 35 248 4.7E-58 T 19-04-2016 AMED_6935 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 SUPERFAMILY SSF69593 35 246 5.62E-40 T 19-04-2016 AMED_6935 e6cb3bc75e9bf5a900b4a6e02afe12c0 254 SMART SM00563 67 185 7.0E-31 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 Pfam PF07690 Major Facilitator Superfamily 18 403 2.4E-50 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 Gene3D G3DSA:1.20.1250.20 6 190 6.0E-28 T 19-04-2016 AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 Gene3D G3DSA:1.20.1250.20 252 459 1.6E-18 T 19-04-2016 AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 PANTHER PTHR23501:SF76 6 459 2.9E-118 T 19-04-2016 AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 416 3.9E-69 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 SUPERFAMILY SSF103473 4 192 7.72E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 SUPERFAMILY SSF103473 240 453 7.72E-61 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6076 6a8e5d45a5876319fd339f84fa4e2b99 470 PANTHER PTHR23501 6 459 2.9E-118 T 19-04-2016 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 PANTHER PTHR30349 10 308 1.2E-97 T 19-04-2016 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 SUPERFAMILY SSF56349 9 300 1.29E-56 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 Gene3D G3DSA:1.10.443.10 122 301 9.1E-57 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 Gene3D G3DSA:1.10.150.130 10 110 1.2E-25 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_6011 e712de11d3c29906a7e3e159df43799f 310 Pfam PF00589 Phage integrase family 123 292 6.2E-46 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 14 308 3.1E-103 T 19-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 308 31.677 T 19-04-2016 IPR023009 Tyrosine recombinase XerC/XerD AMED_6011 e712de11d3c29906a7e3e159df43799f 310 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 8 308 54.957 T 19-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 PANTHER PTHR30349:SF5 10 308 1.2E-97 T 19-04-2016 AMED_6011 e712de11d3c29906a7e3e159df43799f 310 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 100 8.5E-18 T 19-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMED_0723 d4155e86cbfbb294af5f9d3b26c55064 97 Gene3D G3DSA:1.10.287.1060 6 97 7.7E-26 T 19-04-2016 AMED_0723 d4155e86cbfbb294af5f9d3b26c55064 97 Pfam PF06013 Proteins of 100 residues with WXG 7 91 1.1E-18 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0723 d4155e86cbfbb294af5f9d3b26c55064 97 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 7 92 2.8E-22 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0723 d4155e86cbfbb294af5f9d3b26c55064 97 SUPERFAMILY SSF140453 7 97 9.02E-22 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0322 61c1536a181f832c5403fee80d5bf69f 213 Pfam PF06736 Protein of unknown function (DUF1211) 22 110 5.9E-24 T 19-04-2016 IPR010617 Endosomal/lysomomal potassium channel TMEM175 GO:0005267 AMED_0322 61c1536a181f832c5403fee80d5bf69f 213 PANTHER PTHR31462:SF4 18 153 9.2E-13 T 19-04-2016 AMED_0322 61c1536a181f832c5403fee80d5bf69f 213 PANTHER PTHR31462 18 153 9.2E-13 T 19-04-2016 AMED_5963 d0e3f89a244c0c8d7d45a50fc0691564 362 PANTHER PTHR22908:SF67 42 299 4.2E-113 T 19-04-2016 AMED_5963 d0e3f89a244c0c8d7d45a50fc0691564 362 PANTHER PTHR22908 42 299 4.2E-113 T 19-04-2016 AMED_5963 d0e3f89a244c0c8d7d45a50fc0691564 362 SUPERFAMILY SSF52540 59 339 1.05E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5963 d0e3f89a244c0c8d7d45a50fc0691564 362 Gene3D G3DSA:3.40.50.300 63 232 1.5E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5963 d0e3f89a244c0c8d7d45a50fc0691564 362 Pfam PF07728 AAA domain (dynein-related subfamily) 81 219 3.8E-37 T 19-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMED_4666 4ec119192729117fddf523cf6d1a689b 270 Pfam PF11296 Protein of unknown function (DUF3097) 7 265 1.9E-121 T 19-04-2016 IPR021447 Protein of unknown function DUF3097 AMED_8633 d5edfc6055c3137bbc52320f49d00fe3 99 PANTHER PTHR35344 4 73 2.5E-26 T 19-04-2016 AMED_8633 d5edfc6055c3137bbc52320f49d00fe3 99 PANTHER PTHR35344:SF1 4 73 2.5E-26 T 19-04-2016 AMED_8633 d5edfc6055c3137bbc52320f49d00fe3 99 Pfam PF00741 Gas vesicle protein 7 45 5.4E-17 T 19-04-2016 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 AMED_8633 d5edfc6055c3137bbc52320f49d00fe3 99 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 8 22 - T 19-04-2016 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 Pfam PF00196 Bacterial regulatory proteins, luxR family 346 397 1.7E-15 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 Gene3D G3DSA:1.10.10.10 344 399 2.8E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 Gene3D G3DSA:1.25.40.10 203 279 8.6E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 Gene3D G3DSA:1.25.40.10 89 117 8.6E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 SUPERFAMILY SSF46894 340 399 5.44E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 376 388 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 346 360 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 360 376 2.7E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0655 d3bcc71db3048cbf235f7ca81b7c3426 404 SMART SM00421 343 400 2.6E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_9317 3f99695f642e040d5b79c1896bb6e0c0 245 SUPERFAMILY SSF110849 92 132 3.4E-5 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 PANTHER PTHR10108:SF921 116 219 2.1E-14 T 19-04-2016 AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 PANTHER PTHR10108:SF921 30 93 2.1E-14 T 19-04-2016 AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 PANTHER PTHR10108 116 219 2.1E-14 T 19-04-2016 AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 PANTHER PTHR10108 30 93 2.1E-14 T 19-04-2016 AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 SUPERFAMILY SSF53335 112 283 5.42E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 Gene3D G3DSA:3.40.50.150 111 272 8.4E-17 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7352 577bce99e9447a9f847c2b28d2464cad 356 Pfam PF13489 Methyltransferase domain 115 268 8.5E-19 T 19-04-2016 AMED_3786 c16a61f24ebb3aa52f536fe3b3a412ad 108 PIRSF PIRSF004761 1 108 1.2E-28 T 19-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AMED_3786 c16a61f24ebb3aa52f536fe3b3a412ad 108 PANTHER PTHR34535 2 108 1.5E-27 T 19-04-2016 AMED_3786 c16a61f24ebb3aa52f536fe3b3a412ad 108 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 2 108 3.2E-29 T 19-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AMED_3786 c16a61f24ebb3aa52f536fe3b3a412ad 108 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 31 73 - T 19-04-2016 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.2E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.2E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.2E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.6E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 Gene3D G3DSA:3.40.50.720 2 243 9.3E-90 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PANTHER PTHR24322 10 138 9.2E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 PANTHER PTHR24322 154 186 9.2E-55 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 241 5.9E-63 T 19-04-2016 AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 4.0E-4 T 19-04-2016 AMED_7144 6d309e4c88d3ec3c0e9e0cdce6c7dac2 245 SUPERFAMILY SSF51735 4 244 2.53E-84 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3570 3b2af93af06e3763fd32c9822162134c 420 SUPERFAMILY SSF53474 234 379 1.29E-6 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3570 3b2af93af06e3763fd32c9822162134c 420 Gene3D G3DSA:3.40.50.1820 235 285 9.6E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3692 6909e35215d8dd00590633d36ccc32a5 247 SUPERFAMILY SSF54593 131 232 5.5E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3692 6909e35215d8dd00590633d36ccc32a5 247 SUPERFAMILY SSF54593 5 119 1.69E-13 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3692 6909e35215d8dd00590633d36ccc32a5 247 PANTHER PTHR35908 2 129 1.9E-24 T 19-04-2016 AMED_3692 6909e35215d8dd00590633d36ccc32a5 247 PANTHER PTHR35908:SF1 2 129 1.9E-24 T 19-04-2016 AMED_3692 6909e35215d8dd00590633d36ccc32a5 247 Gene3D G3DSA:3.10.180.10 4 118 3.1E-10 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3692 6909e35215d8dd00590633d36ccc32a5 247 Gene3D G3DSA:3.10.180.10 131 232 4.1E-4 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4189 a6f716210ee780dad433a073797f71e5 525 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 9 162 1.7E-63 T 19-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMED_4189 a6f716210ee780dad433a073797f71e5 525 PANTHER PTHR39465 9 146 1.9E-36 T 19-04-2016 AMED_4189 a6f716210ee780dad433a073797f71e5 525 PANTHER PTHR39465:SF2 9 146 1.9E-36 T 19-04-2016 AMED_4189 a6f716210ee780dad433a073797f71e5 525 Pfam PF13298 DNA polymerase Ligase (LigD) 39 144 3.8E-36 T 19-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMED_4189 a6f716210ee780dad433a073797f71e5 525 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 238 487 4.2E-72 T 19-04-2016 IPR014145 DNA ligase D, polymerase domain AMED_3485 beb1f51dc49a8c364659717688b0b9b4 107 PANTHER PTHR30561 1 102 1.5E-24 T 19-04-2016 AMED_3485 beb1f51dc49a8c364659717688b0b9b4 107 Pfam PF00893 Small Multidrug Resistance protein 2 93 1.6E-19 T 19-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 AMED_3485 beb1f51dc49a8c364659717688b0b9b4 107 PANTHER PTHR30561:SF1 1 102 1.5E-24 T 19-04-2016 AMED_3485 beb1f51dc49a8c364659717688b0b9b4 107 SUPERFAMILY SSF103481 5 103 1.12E-14 T 19-04-2016 AMED_8562 5e8c25a45ff19aea116a07cf67c3332c 94 PANTHER PTHR33884 1 89 1.7E-14 T 19-04-2016 AMED_8562 5e8c25a45ff19aea116a07cf67c3332c 94 Pfam PF04226 Transglycosylase associated protein 36 84 1.8E-9 T 19-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 AMED_7066 b8340d2e0b86ecb7ee00bd7305d8e432 283 PIRSF PIRSF006648 11 264 4.6E-15 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_7066 b8340d2e0b86ecb7ee00bd7305d8e432 283 Pfam PF01061 ABC-2 type transporter 12 221 7.0E-16 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_7066 b8340d2e0b86ecb7ee00bd7305d8e432 283 PANTHER PTHR30294 16 272 4.3E-21 T 19-04-2016 AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 Pfam PF00106 short chain dehydrogenase 4 184 4.0E-42 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PANTHER PTHR24322:SF505 148 181 2.2E-44 T 19-04-2016 AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PANTHER PTHR24322:SF505 7 132 2.2E-44 T 19-04-2016 AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.0E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.0E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.0E-7 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PANTHER PTHR24322 148 181 2.2E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 PANTHER PTHR24322 7 132 2.2E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 Gene3D G3DSA:3.40.50.720 2 253 4.2E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2998 d3aa032402ad348aab31cb7589676ccb 286 SUPERFAMILY SSF51735 2 250 1.58E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 Gene3D G3DSA:3.30.70.920 59 144 1.2E-17 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 SMART SM00344 6 113 2.9E-30 T 19-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 PANTHER PTHR30154 1 146 2.3E-36 T 19-04-2016 AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 Pfam PF01037 Lrp/AsnC ligand binding domain 82 142 1.4E-12 T 19-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 3.6E-10 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 3.6E-10 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 3.6E-10 T 19-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 Gene3D G3DSA:1.10.10.10 6 57 1.6E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 1.2E-12 T 19-04-2016 AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 SUPERFAMILY SSF46785 5 66 1.57E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5857 25f51c9f3ac3aaa3746215df99860075 146 SUPERFAMILY SSF54909 66 144 3.22E-13 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 267 29.861 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 265 4.9E-68 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 SUPERFAMILY SSF54506 4 131 1.83E-34 T 19-04-2016 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 SUPERFAMILY SSF54506 136 265 8.64E-31 T 19-04-2016 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 Gene3D G3DSA:3.10.310.10 4 126 6.4E-40 T 19-04-2016 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 Pfam PF01678 Diaminopimelate epimerase 147 250 3.7E-19 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 Pfam PF01678 Diaminopimelate epimerase 6 130 3.6E-36 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 71 85 - T 19-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 Gene3D G3DSA:3.10.310.10 127 250 5.6E-35 T 19-04-2016 AMED_2385 b0cb995d912b3cd8946e017ba5794a3b 275 PANTHER PTHR31689 4 271 5.3E-81 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_3409 c40f1a37a4ff22ad08c3d5da02944eff 267 Gene3D G3DSA:1.10.3720.10 3 254 2.8E-53 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3409 c40f1a37a4ff22ad08c3d5da02944eff 267 PANTHER PTHR32243 3 267 8.3E-76 T 19-04-2016 AMED_3409 c40f1a37a4ff22ad08c3d5da02944eff 267 SUPERFAMILY SSF161098 3 267 3.71E-64 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3409 c40f1a37a4ff22ad08c3d5da02944eff 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 259 2.9E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0426 9bd6e8e8ee184af940427944b5a822c3 139 SUPERFAMILY SSF47413 8 71 8.45E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0426 9bd6e8e8ee184af940427944b5a822c3 139 Pfam PF01381 Helix-turn-helix 15 67 2.0E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0426 9bd6e8e8ee184af940427944b5a822c3 139 PANTHER PTHR10245 1 126 8.4E-48 T 19-04-2016 AMED_0426 9bd6e8e8ee184af940427944b5a822c3 139 SMART SM00530 14 69 1.7E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_0426 9bd6e8e8ee184af940427944b5a822c3 139 PANTHER PTHR10245:SF36 1 126 8.4E-48 T 19-04-2016 AMED_0426 9bd6e8e8ee184af940427944b5a822c3 139 Gene3D G3DSA:1.10.260.40 5 71 1.1E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 SUPERFAMILY SSF52540 134 204 9.04E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 Gene3D G3DSA:3.40.50.300 283 387 1.4E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 SMART SM00487 16 194 4.7E-11 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 Gene3D G3DSA:3.40.50.300 18 177 1.1E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 SUPERFAMILY SSF52540 264 384 9.04E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 Pfam PF04851 Type III restriction enzyme, res subunit 20 172 4.7E-13 T 19-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMED_2581 0aa68fec2b5a41d89bb4b6fecdc221da 578 SUPERFAMILY SSF52540 17 176 7.28E-23 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4460 f88c765d414abd70768fc8d4a69d8022 319 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 83 99 - T 19-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 AMED_4460 f88c765d414abd70768fc8d4a69d8022 319 Gene3D G3DSA:3.40.50.1820 4 312 9.9E-91 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4460 f88c765d414abd70768fc8d4a69d8022 319 SUPERFAMILY SSF53474 40 306 5.16E-67 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4460 f88c765d414abd70768fc8d4a69d8022 319 PANTHER PTHR23024 62 315 2.8E-85 T 19-04-2016 AMED_4460 f88c765d414abd70768fc8d4a69d8022 319 PANTHER PTHR23024:SF24 62 315 2.8E-85 T 19-04-2016 AMED_4460 f88c765d414abd70768fc8d4a69d8022 319 Pfam PF07859 alpha/beta hydrolase fold 83 289 7.6E-66 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_0530 9cfc3434672b8038841db0263a5a777f 99 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 93 2.7E-23 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMED_0530 9cfc3434672b8038841db0263a5a777f 99 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 1 99 20.337 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMED_0530 9cfc3434672b8038841db0263a5a777f 99 PANTHER PTHR11434 2 98 2.4E-35 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 SUPERFAMILY SSF52096 14 295 5.3E-45 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 Pfam PF11918 N-terminal domain of Peptidase_S41 in eukaryotic IRBP 9 81 1.9E-9 T 19-04-2016 AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 Gene3D G3DSA:3.30.750.44 6 79 2.0E-6 T 19-04-2016 AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 PANTHER PTHR11261 10 319 1.2E-43 T 19-04-2016 AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 Pfam PF03572 Peptidase family S41 130 279 1.0E-17 T 19-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 Gene3D G3DSA:3.90.226.10 101 292 8.2E-32 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0162 4e7d3e599e4e65783f2034c6ea550643 319 SMART SM00245 82 280 2.7E-19 T 19-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 2.1E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 2.1E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 2.1E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 2.1E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 Pfam PF01047 MarR family 34 91 1.4E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 PANTHER PTHR39515 7 141 1.4E-36 T 19-04-2016 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 Gene3D G3DSA:1.10.10.10 4 139 2.0E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 SUPERFAMILY SSF46785 5 137 3.21E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 SMART SM00347 27 127 6.4E-24 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_8480 2ba7dc32d4b145d30d6972a282d419ed 143 PANTHER PTHR39515:SF2 7 141 1.4E-36 T 19-04-2016 AMED_5157 4bd89701f3d8bb68c19d03cd6c216052 491 SUPERFAMILY SSF56801 48 447 4.27E-9 T 19-04-2016 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 Gene3D G3DSA:3.30.1330.100 11 59 9.1E-55 T 19-04-2016 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 Gene3D G3DSA:3.30.1330.100 122 222 9.1E-55 T 19-04-2016 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 Pfam PF00881 Nitroreductase family 259 427 7.7E-27 T 19-04-2016 IPR029479 Nitroreductase AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 Gene3D G3DSA:3.40.109.10 255 436 6.0E-36 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 PANTHER PTHR21712:SF30 13 236 2.3E-55 T 19-04-2016 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 Pfam PF01996 F420-0:Gamma-glutamyl ligase 20 219 1.1E-41 T 19-04-2016 IPR002847 Coenzyme F420:L-glutamate ligase-like domain KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199|UniPathway: UPA00071 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 TIGRFAM TIGR03553 F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain 255 446 2.6E-88 T 19-04-2016 IPR019943 Coenzyme F420 biosynthesis protein FbiB, C-terminal GO:0016881 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199|UniPathway: UPA00071 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 SUPERFAMILY SSF144010 13 247 1.44E-67 T 19-04-2016 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 PANTHER PTHR21712 13 236 2.3E-55 T 19-04-2016 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 TIGRFAM TIGR01916 F420_cofE: coenzyme F420-0:L-glutamate ligase 12 242 2.3E-78 T 19-04-2016 IPR008225 Coenzyme F420:L-glutamate ligase GO:0043773|GO:0046872|GO:0051188 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199|UniPathway: UPA00071 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 SUPERFAMILY SSF55469 254 436 2.62E-35 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_1022 c66779b7b8e67be33d9664dc67605b56 448 Hamap MF_01259 Coenzyme F420:L-glutamate ligase [fbiB]. 17 448 50.857 T 19-04-2016 IPR023661 Coenzyme F420:L-glutamate ligase, bacteria GO:0043773|GO:0046872|GO:0051188 KEGG: 00680+6.3.2.31+6.3.2.34|MetaCyc: PWY-5199|UniPathway: UPA00071 AMED_2022 ac8ebad9f7ed59918dc374b08164e823 117 PANTHER PTHR30041:SF0 1 117 1.8E-33 T 19-04-2016 AMED_2022 ac8ebad9f7ed59918dc374b08164e823 117 PANTHER PTHR30041 1 117 1.8E-33 T 19-04-2016 AMED_2022 ac8ebad9f7ed59918dc374b08164e823 117 Gene3D G3DSA:3.40.30.10 1 117 5.4E-37 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_2022 ac8ebad9f7ed59918dc374b08164e823 117 Pfam PF03960 ArsC family 55 114 5.3E-8 T 19-04-2016 IPR006660 Arsenate reductase-like AMED_2022 ac8ebad9f7ed59918dc374b08164e823 117 SUPERFAMILY SSF52833 1 117 5.6E-28 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 Gene3D G3DSA:2.40.50.140 1 72 6.6E-36 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 24.855 T 19-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 6 71 2.2E-33 T 19-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 4.0E-26 T 19-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 PANTHER PTHR33370 1 72 7.8E-40 T 19-04-2016 AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 SMART SM00316 4 72 3.1E-7 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_7008 49ccd7c18af8d513dc5716f276db19c0 73 SUPERFAMILY SSF50249 5 72 1.71E-25 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 PANTHER PTHR30055 18 190 1.2E-16 T 19-04-2016 AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 Gene3D G3DSA:1.10.357.10 18 187 6.2E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 1.1E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 PANTHER PTHR30055:SF8 18 190 1.2E-16 T 19-04-2016 AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 1.0E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6399 0f6286b0fce7251c2e64836fcc1abb57 208 SUPERFAMILY SSF46689 11 88 2.92E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3721 6d07d006fe28210fc6da62f5f827e3ca 163 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 115 6.2E-29 T 19-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMED_3721 6d07d006fe28210fc6da62f5f827e3ca 163 Gene3D G3DSA:3.30.465.10 61 115 1.1E-16 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMED_3721 6d07d006fe28210fc6da62f5f827e3ca 163 SUPERFAMILY SSF56176 2 155 3.22E-39 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMED_3721 6d07d006fe28210fc6da62f5f827e3ca 163 PANTHER PTHR11908:SF97 1 117 1.9E-39 T 19-04-2016 AMED_3721 6d07d006fe28210fc6da62f5f827e3ca 163 Gene3D G3DSA:3.30.43.10 1 49 2.3E-15 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMED_3721 6d07d006fe28210fc6da62f5f827e3ca 163 PANTHER PTHR11908 1 117 1.9E-39 T 19-04-2016 AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 PANTHER PTHR24220:SF358 639 886 7.3E-88 T 19-04-2016 AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 861 883 8.3E-8 T 19-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 Gene3D G3DSA:3.40.50.300 638 882 1.9E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 269 2.2E-26 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF02653 Branched-chain amino acid transport system / permease component 342 533 2.4E-16 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 SMART SM00382 662 860 8.7E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 SUPERFAMILY SSF52540 638 883 1.04E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 PANTHER PTHR24220 639 886 7.3E-88 T 19-04-2016 AMED_3824 cdddc8f8721c23bcf92b6027b216c87b 894 Pfam PF00005 ABC transporter 654 811 1.5E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 PANTHER PTHR12725 2 207 1.6E-35 T 19-04-2016 AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 94 107 5.4E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 168 181 5.4E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 5.4E-6 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 Gene3D G3DSA:3.40.50.1000 71 206 7.7E-27 T 19-04-2016 IPR023214 HAD-like domain AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 Pfam PF00702 haloacid dehalogenase-like hydrolase 56 173 1.0E-7 T 19-04-2016 AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 SUPERFAMILY SSF56784 3 203 1.84E-31 T 19-04-2016 IPR023214 HAD-like domain AMED_0442 c5ef3e6241fe45d39b202464ebe5de46 207 PANTHER PTHR12725:SF66 2 207 1.6E-35 T 19-04-2016 AMED_3412 de2d887eb1d7e46a5f3726f1e7ee6e73 888 Gene3D G3DSA:2.80.10.50 24 96 7.5E-12 T 19-04-2016 AMED_3412 de2d887eb1d7e46a5f3726f1e7ee6e73 888 Gene3D G3DSA:2.80.10.50 97 142 4.8E-8 T 19-04-2016 AMED_3412 de2d887eb1d7e46a5f3726f1e7ee6e73 888 Pfam PF14200 Ricin-type beta-trefoil lectin domain-like 78 131 8.3E-10 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3412 de2d887eb1d7e46a5f3726f1e7ee6e73 888 SUPERFAMILY SSF50370 24 140 1.34E-20 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 SUPERFAMILY SSF48498 84 189 6.28E-25 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 PANTHER PTHR30055 1 175 4.5E-28 T 19-04-2016 AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 Pfam PF13305 WHG domain 88 173 3.4E-13 T 19-04-2016 IPR025996 WHG domain AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 SUPERFAMILY SSF46689 3 74 4.93E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 Gene3D G3DSA:1.10.357.10 2 188 7.5E-43 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 6.5E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0889 f0e10811ad8538538c44cc0a9005f881 205 PANTHER PTHR30055:SF23 1 175 4.5E-28 T 19-04-2016 AMED_7561 421773da98c7da95b8f75b38308bfbfe 460 Pfam PF13006 Insertion element 4 transposase N-terminal 15 107 3.7E-27 T 19-04-2016 IPR024473 Transposase, IS4, N-terminal AMED_7561 421773da98c7da95b8f75b38308bfbfe 460 SUPERFAMILY SSF53098 133 352 5.69E-30 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7561 421773da98c7da95b8f75b38308bfbfe 460 Gene3D G3DSA:3.90.350.10 262 320 1.4E-5 T 19-04-2016 IPR014736 Transposase, Tn5-like, core AMED_7561 421773da98c7da95b8f75b38308bfbfe 460 Pfam PF01609 Transposase DDE domain 132 347 1.5E-27 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_8833 421773da98c7da95b8f75b38308bfbfe 460 Pfam PF13006 Insertion element 4 transposase N-terminal 15 107 3.7E-27 T 19-04-2016 IPR024473 Transposase, IS4, N-terminal AMED_8833 421773da98c7da95b8f75b38308bfbfe 460 SUPERFAMILY SSF53098 133 352 5.69E-30 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_8833 421773da98c7da95b8f75b38308bfbfe 460 Gene3D G3DSA:3.90.350.10 262 320 1.4E-5 T 19-04-2016 IPR014736 Transposase, Tn5-like, core AMED_8833 421773da98c7da95b8f75b38308bfbfe 460 Pfam PF01609 Transposase DDE domain 132 347 1.5E-27 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 SMART SM00382 400 594 1.3E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 Pfam PF00005 ABC transporter 392 548 1.9E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 PANTHER PTHR24221 374 627 1.3E-103 T 19-04-2016 AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 SUPERFAMILY SSF52540 369 618 4.58E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 PANTHER PTHR24221:SF157 374 627 1.3E-103 T 19-04-2016 AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 Gene3D G3DSA:3.40.50.300 373 612 5.1E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 ProSitePatterns PS00211 ABC transporters family signature. 517 531 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5541 9d3c14d26af0214cb60e8cbf281693d3 633 SUPERFAMILY SSF90123 33 312 4.05E-5 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_6514 3955ba12402ef57404998f8e67f99161 216 SUPERFAMILY SSF52317 1 200 4.87E-27 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6514 3955ba12402ef57404998f8e67f99161 216 Gene3D G3DSA:3.40.50.880 1 206 6.9E-45 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_6514 3955ba12402ef57404998f8e67f99161 216 Pfam PF01965 DJ-1/PfpI family 3 182 1.9E-9 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_5619 7c3d993d35e958d47191d7919e878eeb 199 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 83 4.6E-11 T 19-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMED_5619 7c3d993d35e958d47191d7919e878eeb 199 PANTHER PTHR14239 1 182 4.1E-29 T 19-04-2016 AMED_5619 7c3d993d35e958d47191d7919e878eeb 199 SUPERFAMILY SSF51735 1 189 8.36E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5619 7c3d993d35e958d47191d7919e878eeb 199 Gene3D G3DSA:3.40.50.720 1 177 7.6E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2590 61a188fe7439c236b3fcd2e834e84f4e 479 PANTHER PTHR11785 218 466 7.6E-130 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2590 61a188fe7439c236b3fcd2e834e84f4e 479 PANTHER PTHR11785 2 192 7.6E-130 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2590 61a188fe7439c236b3fcd2e834e84f4e 479 PIRSF PIRSF006060 2 473 3.2E-88 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2590 61a188fe7439c236b3fcd2e834e84f4e 479 Pfam PF13520 Amino acid permease 22 441 8.3E-52 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_8687 624d5b9f57ae60483ff3e0c3153d6812 201 PANTHER PTHR20935 4 194 1.1E-53 T 19-04-2016 AMED_8687 624d5b9f57ae60483ff3e0c3153d6812 201 SUPERFAMILY SSF53254 3 188 3.53E-25 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_8687 624d5b9f57ae60483ff3e0c3153d6812 201 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 177 3.4E-20 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_8687 624d5b9f57ae60483ff3e0c3153d6812 201 PANTHER PTHR20935:SF1 4 194 1.1E-53 T 19-04-2016 AMED_8687 624d5b9f57ae60483ff3e0c3153d6812 201 Gene3D G3DSA:3.40.50.1240 6 187 2.3E-20 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_8687 624d5b9f57ae60483ff3e0c3153d6812 201 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 19-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 AMED_5894 db73876a242446768094bda8c3f9c09c 136 SUPERFAMILY SSF55874 41 130 7.83E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5894 db73876a242446768094bda8c3f9c09c 136 Gene3D G3DSA:3.30.565.10 39 130 3.9E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5894 db73876a242446768094bda8c3f9c09c 136 Pfam PF13581 Histidine kinase-like ATPase domain 16 128 9.6E-18 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8928 70cf23c8fec8d8bf6edbc84509c4d20b 606 PANTHER PTHR33908:SF3 1 255 2.1E-59 T 19-04-2016 AMED_8928 70cf23c8fec8d8bf6edbc84509c4d20b 606 PANTHER PTHR33908:SF3 287 436 2.1E-59 T 19-04-2016 AMED_8928 70cf23c8fec8d8bf6edbc84509c4d20b 606 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 54 212 4.5E-29 T 19-04-2016 AMED_8928 70cf23c8fec8d8bf6edbc84509c4d20b 606 PANTHER PTHR33908 1 255 2.1E-59 T 19-04-2016 AMED_8928 70cf23c8fec8d8bf6edbc84509c4d20b 606 PANTHER PTHR33908 287 436 2.1E-59 T 19-04-2016 AMED_2829 6211b7a2e8e1cbffe7600252faa041c2 333 Gene3D G3DSA:1.10.10.10 84 184 9.1E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2829 6211b7a2e8e1cbffe7600252faa041c2 333 PANTHER PTHR30363:SF17 77 296 7.1E-32 T 19-04-2016 AMED_2829 6211b7a2e8e1cbffe7600252faa041c2 333 Pfam PF13518 Helix-turn-helix domain 83 134 5.2E-6 T 19-04-2016 AMED_2829 6211b7a2e8e1cbffe7600252faa041c2 333 SUPERFAMILY SSF46785 80 278 5.52E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2829 6211b7a2e8e1cbffe7600252faa041c2 333 PANTHER PTHR30363 77 296 7.1E-32 T 19-04-2016 AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 SUPERFAMILY SSF52540 2 220 3.85E-62 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 PANTHER PTHR24220 5 225 1.4E-102 T 19-04-2016 AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 PANTHER PTHR24220:SF414 5 225 1.4E-102 T 19-04-2016 AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 Pfam PF00005 ABC transporter 20 157 1.1E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 SMART SM00382 28 214 1.7E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0043 7bfa3f9ee5b6fec0cf1d4d2819bd656b 237 Gene3D G3DSA:3.40.50.300 2 221 4.2E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7693 ae992960e512ada133f63edc43a4e365 73 Pfam PF12277 Protein of unknown function (DUF3618) 2 47 4.0E-18 T 19-04-2016 IPR022062 Protein of unknown function DUF3618 AMED_9118 2991ec0e8c0988e4e0ebbc78deb1632a 92 Gene3D G3DSA:3.30.70.1060 3 85 9.4E-15 T 19-04-2016 AMED_9118 2991ec0e8c0988e4e0ebbc78deb1632a 92 SUPERFAMILY SSF54909 1 85 1.09E-17 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_9118 2991ec0e8c0988e4e0ebbc78deb1632a 92 Pfam PF03795 YCII-related domain 11 83 8.1E-12 T 19-04-2016 IPR005545 YCII-related AMED_6404 08e5daecebf65fa793bd701d3ff0249c 185 Pfam PF03029 Conserved hypothetical ATP binding protein 10 177 3.5E-27 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_6404 08e5daecebf65fa793bd701d3ff0249c 185 Gene3D G3DSA:3.40.50.300 6 176 1.3E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6404 08e5daecebf65fa793bd701d3ff0249c 185 PANTHER PTHR11711 6 181 4.0E-60 T 19-04-2016 AMED_6404 08e5daecebf65fa793bd701d3ff0249c 185 PANTHER PTHR11711:SF117 6 181 4.0E-60 T 19-04-2016 AMED_6404 08e5daecebf65fa793bd701d3ff0249c 185 SUPERFAMILY SSF52540 5 176 1.15E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2504 06cc79ecd22af27399c343aeb09266d7 386 Pfam PF04434 SWIM zinc finger 125 144 4.2E-6 T 19-04-2016 IPR007527 Zinc finger, SWIM-type GO:0008270 AMED_2504 06cc79ecd22af27399c343aeb09266d7 386 PANTHER PTHR38133:SF1 5 386 2.0E-67 T 19-04-2016 AMED_2504 06cc79ecd22af27399c343aeb09266d7 386 PANTHER PTHR38133 5 386 2.0E-67 T 19-04-2016 AMED_4509 12f6fb421ada91aa82a3b6d28cb59054 431 Gene3D G3DSA:3.40.190.10 169 362 2.8E-32 T 19-04-2016 AMED_4509 12f6fb421ada91aa82a3b6d28cb59054 431 Gene3D G3DSA:3.40.190.10 39 168 2.9E-18 T 19-04-2016 AMED_4509 12f6fb421ada91aa82a3b6d28cb59054 431 SUPERFAMILY SSF53850 22 427 3.91E-66 T 19-04-2016 AMED_4509 12f6fb421ada91aa82a3b6d28cb59054 431 PANTHER PTHR30061 1 427 3.5E-51 T 19-04-2016 AMED_4509 12f6fb421ada91aa82a3b6d28cb59054 431 Pfam PF01547 Bacterial extracellular solute-binding protein 47 348 2.3E-29 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_4471 11e9f2340569e0e3a4db9445f66721db 542 PANTHER PTHR33744 7 536 3.4E-44 T 19-04-2016 AMED_4471 11e9f2340569e0e3a4db9445f66721db 542 PANTHER PTHR33744:SF3 7 536 3.4E-44 T 19-04-2016 AMED_4471 11e9f2340569e0e3a4db9445f66721db 542 Pfam PF13556 PucR C-terminal helix-turn-helix domain 478 536 5.7E-20 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_6252 2a1721195745645ff70e9e8a6d85deb9 503 PANTHER PTHR30474:SF2 20 415 1.8E-120 T 19-04-2016 AMED_6252 2a1721195745645ff70e9e8a6d85deb9 503 Pfam PF01098 Cell cycle protein 45 398 2.7E-100 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMED_6252 2a1721195745645ff70e9e8a6d85deb9 503 PANTHER PTHR30474 20 415 1.8E-120 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMED_6252 2a1721195745645ff70e9e8a6d85deb9 503 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 356 380 - T 19-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 AMED_6252 2a1721195745645ff70e9e8a6d85deb9 503 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 44 397 3.3E-103 T 19-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 AMED_5504 57beaa8d27b18ebe71c19cd4ebf3dfba 144 SUPERFAMILY SSF54427 14 139 9.25E-34 T 19-04-2016 IPR032710 NTF2-like domain AMED_5504 57beaa8d27b18ebe71c19cd4ebf3dfba 144 PANTHER PTHR41252 7 142 2.5E-31 T 19-04-2016 AMED_5504 57beaa8d27b18ebe71c19cd4ebf3dfba 144 Gene3D G3DSA:3.10.450.50 12 140 1.8E-34 T 19-04-2016 IPR032710 NTF2-like domain AMED_5504 57beaa8d27b18ebe71c19cd4ebf3dfba 144 Pfam PF12680 SnoaL-like domain 20 126 7.1E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 Pfam PF00164 Ribosomal protein S12/S23 3 123 6.9E-44 T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 Gene3D G3DSA:2.40.50.140 2 123 1.4E-64 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.496 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 123 3.2E-67 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PIRSF PIRSF002133 1 124 1.9E-54 T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 SUPERFAMILY SSF50249 2 123 3.86E-52 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.3E-58 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.3E-58 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.3E-58 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.3E-58 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.3E-58 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.3E-58 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_0672 ae29109f2b576bfb7d58bbbf9de7a324 124 PANTHER PTHR11652 2 116 2.1E-71 T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_3531 00e490d37479e220034b339182776a1c 518 Gene3D G3DSA:2.80.10.50 362 517 1.9E-39 T 19-04-2016 AMED_3531 00e490d37479e220034b339182776a1c 518 Gene3D G3DSA:2.60.120.200 37 354 3.4E-152 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3531 00e490d37479e220034b339182776a1c 518 Pfam PF09206 Alpha-L-arabinofuranosidase B, catalytic 39 353 2.3E-147 T 19-04-2016 IPR015289 Alpha-L-arabinofuranosidase B, catalytic GO:0031221|GO:0046556 KEGG: 00520+3.2.1.55|UniPathway: UPA00667 AMED_3531 00e490d37479e220034b339182776a1c 518 SUPERFAMILY SSF110221 362 517 8.5E-42 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_3531 00e490d37479e220034b339182776a1c 518 Pfam PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain 371 512 2.2E-49 T 19-04-2016 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain GO:0046373|GO:0046556 AMED_3531 00e490d37479e220034b339182776a1c 518 PANTHER PTHR39447:SF2 15 518 2.3E-248 T 19-04-2016 AMED_3531 00e490d37479e220034b339182776a1c 518 SUPERFAMILY SSF49899 38 353 1.52E-142 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_3531 00e490d37479e220034b339182776a1c 518 PANTHER PTHR39447 15 518 2.3E-248 T 19-04-2016 AMED_0029 decf5edde86ad256052b8e828477ee24 465 Gene3D G3DSA:3.40.50.1820 47 284 7.1E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0029 decf5edde86ad256052b8e828477ee24 465 Gene3D G3DSA:3.40.50.1820 345 462 7.1E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0029 decf5edde86ad256052b8e828477ee24 465 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 114 125 1.5E-6 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_0029 decf5edde86ad256052b8e828477ee24 465 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 187 201 1.5E-6 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_0029 decf5edde86ad256052b8e828477ee24 465 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 82 90 1.5E-6 T 19-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMED_0029 decf5edde86ad256052b8e828477ee24 465 Pfam PF00561 alpha/beta hydrolase fold 80 245 3.0E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0029 decf5edde86ad256052b8e828477ee24 465 PANTHER PTHR10992 247 311 1.3E-22 T 19-04-2016 AMED_0029 decf5edde86ad256052b8e828477ee24 465 PANTHER PTHR10992 161 229 1.3E-22 T 19-04-2016 AMED_0029 decf5edde86ad256052b8e828477ee24 465 PANTHER PTHR10992 105 129 1.3E-22 T 19-04-2016 AMED_0029 decf5edde86ad256052b8e828477ee24 465 PANTHER PTHR10992 403 464 1.3E-22 T 19-04-2016 AMED_0029 decf5edde86ad256052b8e828477ee24 465 Pfam PF08386 TAP-like protein 380 463 2.5E-10 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_0029 decf5edde86ad256052b8e828477ee24 465 SUPERFAMILY SSF53474 163 217 1.77E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0029 decf5edde86ad256052b8e828477ee24 465 SUPERFAMILY SSF53474 367 462 1.77E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0029 decf5edde86ad256052b8e828477ee24 465 SUPERFAMILY SSF53474 76 131 1.77E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6979 734cb09fc5cc08a2dc720d09cc9aa5ad 309 Gene3D G3DSA:1.10.260.40 14 90 3.8E-4 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3846 1b13dfccad13989dd77e04ddb25326e8 376 SUPERFAMILY SSF51556 10 365 2.04E-60 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3846 1b13dfccad13989dd77e04ddb25326e8 376 PANTHER PTHR21240 120 376 7.6E-24 T 19-04-2016 AMED_3846 1b13dfccad13989dd77e04ddb25326e8 376 Gene3D G3DSA:3.20.20.140 10 365 4.8E-54 T 19-04-2016 AMED_3846 1b13dfccad13989dd77e04ddb25326e8 376 Pfam PF04909 Amidohydrolase 101 358 4.0E-24 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_5158 4cef855a5a891e4a50c3848e5d22643e 857 Gene3D G3DSA:1.25.40.10 263 325 5.3E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5158 4cef855a5a891e4a50c3848e5d22643e 857 SUPERFAMILY SSF48452 263 322 2.53E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 PANTHER PTHR13707 1 263 3.8E-113 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 PANTHER PTHR13707:SF33 1 263 3.8E-113 T 19-04-2016 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 Gene3D G3DSA:3.40.1080.10 158 264 3.4E-81 T 19-04-2016 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 Gene3D G3DSA:3.40.1080.10 5 120 3.4E-81 T 19-04-2016 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 SMART SM00882 4 224 3.6E-46 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 SUPERFAMILY SSF100950 5 263 2.99E-77 T 19-04-2016 AMED_1857 08f149f3d82733d4da09f2ce286eb709 269 Pfam PF01144 Coenzyme A transferase 6 223 3.7E-28 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_0304 77242692cde0979c95dd99469eed995b 201 PANTHER PTHR30173 26 197 6.5E-31 T 19-04-2016 AMED_0304 77242692cde0979c95dd99469eed995b 201 Gene3D G3DSA:1.10.10.10 133 195 1.6E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0304 77242692cde0979c95dd99469eed995b 201 SUPERFAMILY SSF88659 126 194 5.89E-6 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0304 77242692cde0979c95dd99469eed995b 201 Pfam PF04542 Sigma-70 region 2 40 99 1.5E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0304 77242692cde0979c95dd99469eed995b 201 PANTHER PTHR30173:SF6 26 197 6.5E-31 T 19-04-2016 AMED_0304 77242692cde0979c95dd99469eed995b 201 SUPERFAMILY SSF88946 24 124 2.35E-18 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0304 77242692cde0979c95dd99469eed995b 201 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 192 2.3E-20 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0304 77242692cde0979c95dd99469eed995b 201 Gene3D G3DSA:1.10.1740.10 24 130 2.0E-20 T 19-04-2016 AMED_0821 31e46cd05a3644530da763715a835fe1 394 PANTHER PTHR23501 1 389 5.7E-128 T 19-04-2016 AMED_0821 31e46cd05a3644530da763715a835fe1 394 SUPERFAMILY SSF103473 3 380 9.94E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0821 31e46cd05a3644530da763715a835fe1 394 PANTHER PTHR23501:SF4 1 389 5.7E-128 T 19-04-2016 AMED_0821 31e46cd05a3644530da763715a835fe1 394 Gene3D G3DSA:1.20.1250.20 198 384 2.5E-16 T 19-04-2016 AMED_0821 31e46cd05a3644530da763715a835fe1 394 Pfam PF07690 Major Facilitator Superfamily 8 343 6.1E-42 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0821 31e46cd05a3644530da763715a835fe1 394 Gene3D G3DSA:1.20.1250.20 5 189 1.8E-28 T 19-04-2016 AMED_3590 b821eefa38f877f6512a796be4f09603 122 Gene3D G3DSA:3.30.450.20 1 103 6.4E-13 T 19-04-2016 AMED_3590 b821eefa38f877f6512a796be4f09603 122 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 102 2.3E-7 T 19-04-2016 IPR000014 PAS domain AMED_3590 b821eefa38f877f6512a796be4f09603 122 Pfam PF08448 PAS fold 2 108 9.1E-10 T 19-04-2016 IPR013656 PAS fold-4 AMED_3590 b821eefa38f877f6512a796be4f09603 122 SUPERFAMILY SSF55785 2 102 5.06E-13 T 19-04-2016 IPR000014 PAS domain AMED_7218 29576cddddb9b10d305ac6926b7a0843 132 SUPERFAMILY SSF54427 10 131 2.99E-26 T 19-04-2016 IPR032710 NTF2-like domain AMED_7218 29576cddddb9b10d305ac6926b7a0843 132 Gene3D G3DSA:3.10.450.50 13 130 1.9E-26 T 19-04-2016 IPR032710 NTF2-like domain AMED_7218 29576cddddb9b10d305ac6926b7a0843 132 Pfam PF13577 SnoaL-like domain 13 126 6.0E-18 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_5281 88fed877f1c6c2f9037646a5f181c9b6 561 PANTHER PTHR41771 272 559 3.2E-67 T 19-04-2016 AMED_5281 88fed877f1c6c2f9037646a5f181c9b6 561 PANTHER PTHR41771:SF1 272 559 3.2E-67 T 19-04-2016 AMED_5281 88fed877f1c6c2f9037646a5f181c9b6 561 Pfam PF07907 YibE/F-like protein 304 542 6.5E-73 T 19-04-2016 IPR012507 YibE/F-like AMED_8624 bc589301d6acdac3f516cb58914e0d43 170 PANTHER PTHR21366 16 160 1.6E-18 T 19-04-2016 AMED_8624 bc589301d6acdac3f516cb58914e0d43 170 PANTHER PTHR21366:SF4 16 160 1.6E-18 T 19-04-2016 AMED_8624 bc589301d6acdac3f516cb58914e0d43 170 SUPERFAMILY SSF54593 38 167 3.09E-28 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8624 bc589301d6acdac3f516cb58914e0d43 170 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 39 156 5.4E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_8624 bc589301d6acdac3f516cb58914e0d43 170 Gene3D G3DSA:3.10.180.10 24 164 5.5E-34 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2274 1664a585639e5d1bd897bb7d8c4ffc13 113 Gene3D G3DSA:3.30.70.900 1 96 9.2E-28 T 19-04-2016 AMED_2274 1664a585639e5d1bd897bb7d8c4ffc13 113 PANTHER PTHR41521 1 103 1.4E-14 T 19-04-2016 AMED_2274 1664a585639e5d1bd897bb7d8c4ffc13 113 Pfam PF07045 Domain of unknown function (DUF1330) 14 95 4.4E-24 T 19-04-2016 IPR010753 Domain of unknown function DUF1330 AMED_2274 1664a585639e5d1bd897bb7d8c4ffc13 113 SUPERFAMILY SSF54909 2 95 3.59E-23 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 21 506 86.871 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 Gene3D G3DSA:3.30.360.10 208 505 8.4E-118 T 19-04-2016 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 Gene3D G3DSA:3.40.50.720 20 207 1.8E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 258 274 1.3E-48 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 188 216 1.3E-48 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 240 257 1.3E-48 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 164 177 1.3E-48 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 347 373 1.3E-48 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PANTHER PTHR23429:SF0 16 507 7.6E-234 T 19-04-2016 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 210 505 1.5E-110 T 19-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 198 204 - T 19-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PIRSF PIRSF000110 8 507 4.6E-177 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 SUPERFAMILY SSF51735 8 211 2.89E-62 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 25 208 5.4E-62 T 19-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 PANTHER PTHR23429 16 507 7.6E-234 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 22 506 8.5E-198 T 19-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 AMED_2806 91ebf7807d00087c9740f989c2c0082b 507 SUPERFAMILY SSF55347 198 505 9.81E-111 T 19-04-2016 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 89 408 8.4E-83 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 PANTHER PTHR11712 2 433 1.5E-89 T 19-04-2016 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 Gene3D G3DSA:3.40.366.10 82 233 2.4E-67 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 Gene3D G3DSA:3.40.366.10 297 392 2.4E-67 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 SUPERFAMILY SSF52151 299 390 1.73E-58 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 SUPERFAMILY SSF52151 86 139 1.73E-58 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 SUPERFAMILY SSF52151 166 239 1.73E-58 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 Pfam PF00698 Acyl transferase domain 87 377 1.5E-40 T 19-04-2016 IPR014043 Acyl transferase AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 Gene3D G3DSA:3.30.70.250 236 293 4.5E-4 T 19-04-2016 AMED_4766 077d360739df8d71b42c36ea7ac5dad7 453 SUPERFAMILY SSF55048 237 291 6.67E-7 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 SUPERFAMILY SSF51905 4 164 2.39E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 SUPERFAMILY SSF51905 263 354 2.39E-45 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 Gene3D G3DSA:3.50.50.60 264 343 8.1E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 Gene3D G3DSA:3.50.50.60 4 169 8.1E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 Pfam PF01494 FAD binding domain 125 339 6.9E-14 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 Pfam PF01494 FAD binding domain 4 68 7.5E-5 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 PANTHER PTHR13789 1 361 1.4E-108 T 19-04-2016 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 4.0E-20 T 19-04-2016 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 4.0E-20 T 19-04-2016 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 4.0E-20 T 19-04-2016 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 4.0E-20 T 19-04-2016 AMED_5129 5849f30a0f360856dccc165bdc196f89 371 PANTHER PTHR13789:SF174 1 361 1.4E-108 T 19-04-2016 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 SUPERFAMILY SSF46894 132 200 3.74E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 Gene3D G3DSA:3.40.50.2300 1 149 4.4E-29 T 19-04-2016 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 Pfam PF00072 Response regulator receiver domain 3 108 4.6E-18 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 PANTHER PTHR26402:SF582 1 210 1.7E-82 T 19-04-2016 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 SMART SM00421 148 205 6.5E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 198 3.2E-12 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 PANTHER PTHR26402 1 210 1.7E-82 T 19-04-2016 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 Gene3D G3DSA:1.10.10.10 150 213 1.1E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 SMART SM00448 1 120 1.8E-14 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 SUPERFAMILY SSF52172 1 135 7.97E-23 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 7.9E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 7.9E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1386 319f4d8ca80db2d76adf0e924a4b65d8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 7.9E-9 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_7137 142b3f0b15c224130fb289745e52b5d4 310 Gene3D G3DSA:3.50.30.50 50 308 3.4E-27 T 19-04-2016 AMED_7137 142b3f0b15c224130fb289745e52b5d4 310 Pfam PF04199 Putative cyclase 53 241 3.2E-22 T 19-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 AMED_7137 142b3f0b15c224130fb289745e52b5d4 310 PANTHER PTHR34861 18 310 3.1E-64 T 19-04-2016 AMED_7137 142b3f0b15c224130fb289745e52b5d4 310 PANTHER PTHR34861:SF5 18 310 3.1E-64 T 19-04-2016 AMED_7137 142b3f0b15c224130fb289745e52b5d4 310 SUPERFAMILY SSF102198 49 309 1.03E-22 T 19-04-2016 AMED_8070 e48518fddbfd8a72e2a96ee199b4fcb7 155 PANTHER PTHR34796 1 141 1.9E-27 T 19-04-2016 AMED_8070 e48518fddbfd8a72e2a96ee199b4fcb7 155 Pfam PF03745 Domain of unknown function (DUF309) 47 105 3.6E-20 T 19-04-2016 IPR005500 Protein of unknown function DUF309 AMED_8070 e48518fddbfd8a72e2a96ee199b4fcb7 155 PANTHER PTHR34796:SF1 1 141 1.9E-27 T 19-04-2016 AMED_8070 e48518fddbfd8a72e2a96ee199b4fcb7 155 Gene3D G3DSA:1.10.3450.10 16 143 1.0E-26 T 19-04-2016 IPR023203 TTHA0068-like domain AMED_8070 e48518fddbfd8a72e2a96ee199b4fcb7 155 SUPERFAMILY SSF140663 29 139 1.44E-27 T 19-04-2016 IPR023203 TTHA0068-like domain AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 PANTHER PTHR18964:SF123 47 365 4.5E-71 T 19-04-2016 AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 SUPERFAMILY SSF53067 68 364 1.19E-49 T 19-04-2016 AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 PANTHER PTHR18964 47 365 4.5E-71 T 19-04-2016 AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 Gene3D G3DSA:1.10.10.10 1 62 4.7E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 ProSitePatterns PS01125 ROK family signature. 199 226 - T 19-04-2016 IPR000600 ROK family AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 Gene3D G3DSA:3.30.420.40 64 203 1.3E-38 T 19-04-2016 AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 Pfam PF00480 ROK family 70 342 1.1E-51 T 19-04-2016 IPR000600 ROK family AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 Gene3D G3DSA:3.30.420.40 204 339 3.2E-44 T 19-04-2016 AMED_1852 e9ba58cac338052e3801e82a3eae9b03 371 SUPERFAMILY SSF46785 1 56 1.98E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4377 5b1ad6104d58f4d029be5806e0e40de2 135 Gene3D G3DSA:2.30.110.10 11 131 3.0E-19 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4377 5b1ad6104d58f4d029be5806e0e40de2 135 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 94 7.2E-13 T 19-04-2016 IPR024747 Pyridoxamine 5'-phosphate oxidase-related AMED_4377 5b1ad6104d58f4d029be5806e0e40de2 135 SUPERFAMILY SSF50475 11 129 4.58E-13 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 Pfam PF04542 Sigma-70 region 2 29 98 3.5E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 PANTHER PTHR30173:SF16 1 184 2.6E-43 T 19-04-2016 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 Gene3D G3DSA:1.10.10.10 128 184 2.0E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 Pfam PF08281 Sigma-70, region 4 129 180 3.1E-11 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 PANTHER PTHR30173 1 184 2.6E-43 T 19-04-2016 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 184 5.6E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 SUPERFAMILY SSF88659 122 184 1.37E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 Gene3D G3DSA:1.10.1740.10 6 121 2.5E-25 T 19-04-2016 AMED_8214 77ffc0314d4f85ccc1bef9263eb50a19 185 SUPERFAMILY SSF88946 5 113 4.71E-23 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5744 721a191c4d8f5131cdf2821100fc2655 223 Gene3D G3DSA:3.40.190.10 90 202 1.8E-14 T 19-04-2016 AMED_5744 721a191c4d8f5131cdf2821100fc2655 223 SUPERFAMILY SSF53850 19 184 8.5E-17 T 19-04-2016 AMED_5744 721a191c4d8f5131cdf2821100fc2655 223 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 14 199 5.8E-21 T 19-04-2016 AMED_4210 8f8d87a2993b048c5c6fc60857260982 191 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 10 181 8.5E-21 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_4210 8f8d87a2993b048c5c6fc60857260982 191 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 13 185 6.6E-39 T 19-04-2016 IPR017520 Conserved hypothetical protein CHP03086 AMED_4210 8f8d87a2993b048c5c6fc60857260982 191 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 13 128 8.3E-15 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_4210 8f8d87a2993b048c5c6fc60857260982 191 SUPERFAMILY SSF109854 6 134 2.59E-20 T 19-04-2016 AMED_6002 e6292db48edc3a9834774c6d224fbbc7 166 Gene3D G3DSA:3.30.70.1450 92 163 3.6E-19 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_6002 e6292db48edc3a9834774c6d224fbbc7 166 PANTHER PTHR30445 3 163 3.9E-38 T 19-04-2016 AMED_6002 e6292db48edc3a9834774c6d224fbbc7 166 PIRSF PIRSF005028 4 166 1.5E-54 T 19-04-2016 IPR026278 Potassium/proton antiporter subunit KhtT AMED_6002 e6292db48edc3a9834774c6d224fbbc7 166 SUPERFAMILY SSF116726 90 163 9.94E-16 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_6002 e6292db48edc3a9834774c6d224fbbc7 166 Pfam PF02080 TrkA-C domain 95 163 5.1E-13 T 19-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AMED_3527 7e36812cfe315af661bd97af09c6ddde 967 Pfam PF05729 NACHT domain 201 355 2.0E-8 T 19-04-2016 AMED_3527 7e36812cfe315af661bd97af09c6ddde 967 SUPERFAMILY SSF52540 200 364 1.14E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3527 7e36812cfe315af661bd97af09c6ddde 967 SMART SM00382 198 341 0.0019 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3527 7e36812cfe315af661bd97af09c6ddde 967 Gene3D G3DSA:3.40.50.300 199 320 8.9E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6763 c23fb1931cabad4084800f373f2d2f81 237 SMART SM00332 2 220 0.0021 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6763 c23fb1931cabad4084800f373f2d2f81 237 SUPERFAMILY SSF81606 10 220 1.7E-23 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6763 c23fb1931cabad4084800f373f2d2f81 237 Gene3D G3DSA:3.60.40.10 10 220 1.2E-24 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_4072 93f729930bdc9b23921dac9df883ebb0 106 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 6 96 4.4E-19 T 19-04-2016 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-7591|UniPathway: UPA00799|UniPathway: UPA00802 AMED_2209 d01fcd9cd0132893ffaa506fd8681563 334 Pfam PF00877 NlpC/P60 family 234 328 3.0E-26 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_2209 d01fcd9cd0132893ffaa506fd8681563 334 PANTHER PTHR21666 208 331 6.8E-39 T 19-04-2016 AMED_2209 d01fcd9cd0132893ffaa506fd8681563 334 Gene3D G3DSA:3.90.1720.10 218 332 4.1E-45 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_2209 d01fcd9cd0132893ffaa506fd8681563 334 SUPERFAMILY SSF54001 217 332 2.35E-41 T 19-04-2016 AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 10 251 7.3E-55 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 261 372 6.5E-31 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 SUPERFAMILY SSF53901 10 258 1.24E-64 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 SUPERFAMILY SSF53901 221 413 9.84E-62 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 Gene3D G3DSA:3.40.47.10 269 413 4.8E-52 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 Gene3D G3DSA:3.40.47.10 10 263 8.0E-61 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 PANTHER PTHR11712 11 413 1.9E-148 T 19-04-2016 AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 SMART SM00825 Beta-ketoacyl synthase 11 406 2.2E-12 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_4008 1cb8698b7cfa15a0d7c4466b2e464228 415 PIRSF PIRSF000447 7 415 2.3E-137 T 19-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 AMED_5268 99d3179ee52a4180cd6ee9e67fda6033 208 Gene3D G3DSA:3.40.50.300 16 176 4.1E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5268 99d3179ee52a4180cd6ee9e67fda6033 208 SUPERFAMILY SSF52540 17 184 2.08E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5268 99d3179ee52a4180cd6ee9e67fda6033 208 Pfam PF03029 Conserved hypothetical ATP binding protein 21 186 2.4E-22 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_5268 99d3179ee52a4180cd6ee9e67fda6033 208 PANTHER PTHR11711 18 183 1.5E-50 T 19-04-2016 AMED_5268 99d3179ee52a4180cd6ee9e67fda6033 208 PANTHER PTHR11711:SF117 18 183 1.5E-50 T 19-04-2016 AMED_0312 99dfc22145888b281f62f4bf83d958e2 181 PANTHER PTHR33169:SF4 1 175 4.3E-59 T 19-04-2016 AMED_0312 99dfc22145888b281f62f4bf83d958e2 181 Gene3D G3DSA:1.10.10.10 1 86 2.4E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0312 99dfc22145888b281f62f4bf83d958e2 181 PANTHER PTHR33169 1 175 4.3E-59 T 19-04-2016 AMED_0312 99dfc22145888b281f62f4bf83d958e2 181 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 5.6E-14 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_0312 99dfc22145888b281f62f4bf83d958e2 181 SUPERFAMILY SSF46785 3 175 6.98E-42 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0312 99dfc22145888b281f62f4bf83d958e2 181 Pfam PF10400 Virulence activator alpha C-term 94 174 4.0E-23 T 19-04-2016 IPR018309 Transcription regulator PadR, C-terminal AMED_3798 4a165e53b8060fbd730cc8dcd7377790 61 Pfam PF01455 HupF/HypC family 11 59 1.2E-10 T 19-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AMED_3798 4a165e53b8060fbd730cc8dcd7377790 61 SUPERFAMILY SSF159127 10 59 1.31E-8 T 19-04-2016 AMED_8816 1c80dc9990844b7a7189921ca0ca3706 200 Gene3D G3DSA:3.40.630.30 4 192 3.7E-62 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8816 1c80dc9990844b7a7189921ca0ca3706 200 SUPERFAMILY SSF55729 5 177 6.93E-40 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8816 1c80dc9990844b7a7189921ca0ca3706 200 Pfam PF13302 Acetyltransferase (GNAT) domain 15 150 1.7E-17 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8816 1c80dc9990844b7a7189921ca0ca3706 200 PANTHER PTHR13256 4 200 3.5E-67 T 19-04-2016 AMED_8816 1c80dc9990844b7a7189921ca0ca3706 200 PANTHER PTHR13256:SF20 4 200 3.5E-67 T 19-04-2016 AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SUPERFAMILY SSF51126 234 362 5.29E-22 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SUPERFAMILY SSF51126 56 203 5.29E-22 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 Pfam PF13229 Right handed beta helix region 160 318 8.2E-12 T 19-04-2016 AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 245 267 80.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 161 183 26.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 269 290 1300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 209 244 3800.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 292 329 10.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 SMART SM00710 340 361 590.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0554 89e2f1f12d89024fb115f216aae77a00 508 Gene3D G3DSA:2.160.20.10 57 362 3.6E-14 T 19-04-2016 IPR012334 Pectin lyase fold AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 PANTHER PTHR10245 5 188 2.0E-27 T 19-04-2016 AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 Gene3D G3DSA:2.60.120.10 123 190 9.2E-19 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 SUPERFAMILY SSF51182 78 188 1.09E-16 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 SMART SM00530 30 85 6.7E-13 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 SUPERFAMILY SSF47413 25 91 2.65E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 Gene3D G3DSA:1.10.260.40 27 122 6.8E-19 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5308 a849623e69e7e59add2ca819d3b962a3 201 Pfam PF01381 Helix-turn-helix 31 83 7.5E-14 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_1878 69d39f015724b642a59fd1bb34414f56 518 Pfam PF00149 Calcineurin-like phosphoesterase 275 438 1.0E-8 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_1878 69d39f015724b642a59fd1bb34414f56 518 Gene3D G3DSA:2.60.40.10 159 245 2.2E-22 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_1878 69d39f015724b642a59fd1bb34414f56 518 Gene3D G3DSA:3.60.21.10 252 510 1.1E-43 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1878 69d39f015724b642a59fd1bb34414f56 518 PANTHER PTHR22953 213 505 9.9E-35 T 19-04-2016 AMED_1878 69d39f015724b642a59fd1bb34414f56 518 PANTHER PTHR22953:SF0 213 505 9.9E-35 T 19-04-2016 AMED_1878 69d39f015724b642a59fd1bb34414f56 518 Gene3D G3DSA:2.60.120.260 20 154 1.1E-31 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1878 69d39f015724b642a59fd1bb34414f56 518 Pfam PF00754 F5/8 type C domain 33 145 2.2E-23 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_1878 69d39f015724b642a59fd1bb34414f56 518 SUPERFAMILY SSF56300 273 510 6.46E-42 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_1878 69d39f015724b642a59fd1bb34414f56 518 SUPERFAMILY SSF49265 159 246 6.51E-16 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1878 69d39f015724b642a59fd1bb34414f56 518 Pfam PF00041 Fibronectin type III domain 164 237 1.6E-5 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1878 69d39f015724b642a59fd1bb34414f56 518 SUPERFAMILY SSF49785 29 151 1.49E-26 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1878 69d39f015724b642a59fd1bb34414f56 518 SMART SM00060 161 234 2.6E-8 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_5892 52000513f35bb655fcd1889a27832728 100 Pfam PF13466 STAS domain 19 91 1.3E-12 T 19-04-2016 IPR002645 STAS domain AMED_5892 52000513f35bb655fcd1889a27832728 100 SUPERFAMILY SSF52091 14 96 2.55E-12 T 19-04-2016 IPR002645 STAS domain AMED_5892 52000513f35bb655fcd1889a27832728 100 Gene3D G3DSA:3.30.750.24 14 97 1.6E-14 T 19-04-2016 IPR002645 STAS domain AMED_3620 dae7a3d5cce550b27c77ff4f937278ad 242 Gene3D G3DSA:3.30.1380.10 115 236 1.1E-30 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_3620 dae7a3d5cce550b27c77ff4f937278ad 242 Pfam PF01471 Putative peptidoglycan binding domain 43 103 1.7E-11 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3620 dae7a3d5cce550b27c77ff4f937278ad 242 Gene3D G3DSA:1.10.101.10 33 108 6.7E-20 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3620 dae7a3d5cce550b27c77ff4f937278ad 242 SUPERFAMILY SSF47090 30 105 7.14E-16 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3620 dae7a3d5cce550b27c77ff4f937278ad 242 SUPERFAMILY SSF55166 114 233 1.06E-25 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_3620 dae7a3d5cce550b27c77ff4f937278ad 242 Pfam PF08291 Peptidase M15 115 225 1.7E-25 T 19-04-2016 IPR013230 Peptidase M15A, C-terminal MetaCyc: PWY-6470 AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 PANTHER PTHR30055 24 255 8.3E-38 T 19-04-2016 AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 98 252 2.0E-14 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 85 8.9E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 PANTHER PTHR30055:SF93 24 255 8.3E-38 T 19-04-2016 AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 SUPERFAMILY SSF48498 103 253 2.22E-22 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 Gene3D G3DSA:1.10.357.10 27 256 3.0E-55 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4705 53affa82bd47a094a5d2cfd004b73deb 258 SUPERFAMILY SSF46689 29 97 4.59E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0568 85d894f7dc887460e3b98bf78f4a15a9 263 Gene3D G3DSA:3.90.550.10 2 251 5.3E-44 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0568 85d894f7dc887460e3b98bf78f4a15a9 263 PANTHER PTHR22572:SF24 2 262 2.9E-150 T 19-04-2016 AMED_0568 85d894f7dc887460e3b98bf78f4a15a9 263 SUPERFAMILY SSF53448 1 255 8.56E-43 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0568 85d894f7dc887460e3b98bf78f4a15a9 263 PANTHER PTHR22572 2 262 2.9E-150 T 19-04-2016 AMED_5733 5994ae82823266261c4f41a36448321e 602 PANTHER PTHR31616 1 602 2.8E-66 T 19-04-2016 AMED_5733 5994ae82823266261c4f41a36448321e 602 Pfam PF00723 Glycosyl hydrolases family 15 256 531 2.4E-20 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_5733 5994ae82823266261c4f41a36448321e 602 SUPERFAMILY SSF48208 242 593 2.49E-58 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5733 5994ae82823266261c4f41a36448321e 602 PANTHER PTHR31616:SF0 1 602 2.8E-66 T 19-04-2016 AMED_5733 5994ae82823266261c4f41a36448321e 602 Gene3D G3DSA:1.50.10.10 241 593 7.1E-39 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_7531 f56f957ceb8ebc5ec4a3d1280fd0d027 377 PANTHER PTHR12526 11 368 1.5E-60 T 19-04-2016 AMED_7531 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Pfam PF13439 Glycosyltransferase Family 4 15 171 2.4E-22 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_7531 f56f957ceb8ebc5ec4a3d1280fd0d027 377 SUPERFAMILY SSF53756 9 357 5.02E-71 T 19-04-2016 AMED_7531 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Pfam PF00534 Glycosyl transferases group 1 179 335 1.1E-29 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_7531 f56f957ceb8ebc5ec4a3d1280fd0d027 377 Gene3D G3DSA:3.40.50.2000 178 336 3.7E-29 T 19-04-2016 AMED_5113 97f36ee88d8c596f25b923d257da82e0 60 Gene3D G3DSA:1.10.1470.10 1 58 2.9E-14 T 19-04-2016 IPR008462 CsbD-like AMED_5113 97f36ee88d8c596f25b923d257da82e0 60 SUPERFAMILY SSF69047 2 58 1.96E-10 T 19-04-2016 IPR008462 CsbD-like AMED_5113 97f36ee88d8c596f25b923d257da82e0 60 Pfam PF05532 CsbD-like 3 54 7.2E-18 T 19-04-2016 IPR008462 CsbD-like AMED_4979 31dad04dd64b9f75a742e9913fc25721 119 Gene3D G3DSA:3.10.450.50 3 116 3.8E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_4979 31dad04dd64b9f75a742e9913fc25721 119 SUPERFAMILY SSF54427 1 115 4.93E-34 T 19-04-2016 IPR032710 NTF2-like domain AMED_4979 31dad04dd64b9f75a742e9913fc25721 119 Pfam PF12680 SnoaL-like domain 8 109 2.1E-13 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_4273 de39163bb81f3ab6bbca93eca7226f95 186 Pfam PF13580 SIS domain 8 139 1.8E-28 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_4273 de39163bb81f3ab6bbca93eca7226f95 186 Gene3D G3DSA:3.40.50.10490 1 183 1.9E-54 T 19-04-2016 AMED_4273 de39163bb81f3ab6bbca93eca7226f95 186 PANTHER PTHR30390 1 182 3.4E-70 T 19-04-2016 AMED_4273 de39163bb81f3ab6bbca93eca7226f95 186 PANTHER PTHR30390:SF6 1 182 3.4E-70 T 19-04-2016 AMED_4273 de39163bb81f3ab6bbca93eca7226f95 186 SUPERFAMILY SSF53697 3 183 2.04E-46 T 19-04-2016 AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 6.9E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 Pfam PF16859 Bacterial transcriptional repressor C-terminal 78 190 1.4E-23 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 SUPERFAMILY SSF48498 79 197 9.78E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 Gene3D G3DSA:1.10.10.60 6 62 5.7E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 PANTHER PTHR30055 3 196 1.8E-20 T 19-04-2016 AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 PANTHER PTHR30055:SF66 3 196 1.8E-20 T 19-04-2016 AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 Gene3D G3DSA:1.10.357.10 63 196 2.8E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1441 63c02911ee007d2ee222ad7e6d087014 202 SUPERFAMILY SSF46689 8 71 5.08E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5428 ee60a0bf53eff8d31dbdd7a9aa56d5d6 101 Gene3D G3DSA:3.30.70.900 20 99 1.5E-12 T 19-04-2016 AMED_5428 ee60a0bf53eff8d31dbdd7a9aa56d5d6 101 SUPERFAMILY SSF54909 7 98 9.06E-16 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_5428 ee60a0bf53eff8d31dbdd7a9aa56d5d6 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 22 74 7.8E-10 T 19-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 PANTHER PTHR22935:SF67 49 257 3.7E-103 T 19-04-2016 AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Pfam PF01427 D-ala-D-ala dipeptidase 33 157 2.5E-19 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Pfam PF01427 D-ala-D-ala dipeptidase 187 255 3.9E-15 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Gene3D G3DSA:3.30.1380.10 33 255 5.4E-74 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 34 254 32.092 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 SUPERFAMILY SSF55166 33 255 9.42E-62 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 PANTHER PTHR22935 49 257 3.7E-103 T 19-04-2016 AMED_0659 0c7db5c8d5c4442690e2a2c9a3b3a655 261 PIRSF PIRSF026671 10 260 2.2E-72 T 19-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AMED_9194 1c9b38a1ebe662f45152fb6780b1e583 186 Gene3D G3DSA:3.40.470.10 18 182 4.7E-54 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_9194 1c9b38a1ebe662f45152fb6780b1e583 186 PANTHER PTHR12159 13 177 2.2E-62 T 19-04-2016 IPR015637 G/U mismatch-specific DNA glycosylase GO:0006281|GO:0019104 AMED_9194 1c9b38a1ebe662f45152fb6780b1e583 186 SMART SM00986 19 177 1.5E-9 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_9194 1c9b38a1ebe662f45152fb6780b1e583 186 SMART SM00987 19 177 1.5E-9 T 19-04-2016 AMED_9194 1c9b38a1ebe662f45152fb6780b1e583 186 Pfam PF03167 Uracil DNA glycosylase superfamily 20 176 8.9E-25 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_9194 1c9b38a1ebe662f45152fb6780b1e583 186 SUPERFAMILY SSF52141 17 177 2.91E-45 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMED_1349 68a2d095ddee317131bcacfcf80b38d3 213 PANTHER PTHR30055:SF43 13 213 5.8E-16 T 19-04-2016 AMED_1349 68a2d095ddee317131bcacfcf80b38d3 213 Gene3D G3DSA:1.10.357.10 14 195 4.5E-29 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1349 68a2d095ddee317131bcacfcf80b38d3 213 SUPERFAMILY SSF46689 17 84 3.84E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1349 68a2d095ddee317131bcacfcf80b38d3 213 SUPERFAMILY SSF48498 89 192 4.89E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1349 68a2d095ddee317131bcacfcf80b38d3 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 66 1.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1349 68a2d095ddee317131bcacfcf80b38d3 213 PANTHER PTHR30055 13 213 5.8E-16 T 19-04-2016 AMED_3678 6f580ba167b43da99ecd698ca732924a 320 PIRSF PIRSF026534 3 320 2.4E-100 T 19-04-2016 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase GO:0046558 UniPathway: UPA00667 AMED_3678 6f580ba167b43da99ecd698ca732924a 320 Gene3D G3DSA:2.115.10.20 23 319 1.2E-79 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3678 6f580ba167b43da99ecd698ca732924a 320 PANTHER PTHR22925:SF36 1 317 3.8E-83 T 19-04-2016 AMED_3678 6f580ba167b43da99ecd698ca732924a 320 Pfam PF04616 Glycosyl hydrolases family 43 41 316 9.3E-50 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_3678 6f580ba167b43da99ecd698ca732924a 320 SUPERFAMILY SSF75005 18 318 3.71E-72 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_3678 6f580ba167b43da99ecd698ca732924a 320 PANTHER PTHR22925 1 317 3.8E-83 T 19-04-2016 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 Gene3D G3DSA:3.40.640.10 142 360 6.5E-62 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 SUPERFAMILY SSF46785 9 78 2.06E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 Pfam PF00155 Aminotransferase class I and II 128 407 6.1E-22 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 PANTHER PTHR11751:SF10 115 467 5.8E-103 T 19-04-2016 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 SUPERFAMILY SSF53383 100 467 1.24E-88 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 Gene3D G3DSA:1.10.10.10 12 78 1.9E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.4E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.4E-6 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 1.9E-17 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 SMART SM00345 17 76 2.5E-18 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_4173 356acc26dceb6f6d59a7ce828f280027 468 PANTHER PTHR11751 115 467 5.8E-103 T 19-04-2016 AMED_8948 35021311ffee82ed07f7074bd7b39e24 122 Gene3D G3DSA:3.30.1310.10 45 87 5.4E-5 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8948 35021311ffee82ed07f7074bd7b39e24 122 SUPERFAMILY SSF82607 10 89 7.06E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_4226 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 Pfam PF00144 Beta-lactamase 23 337 8.3E-59 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_4226 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 SUPERFAMILY SSF56601 42 338 3.98E-71 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4226 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 PANTHER PTHR22935 55 337 7.6E-57 T 19-04-2016 AMED_4226 dc2f4187f9040e10e8cbd7f8cb3ffcac 394 Gene3D G3DSA:3.40.710.10 31 337 8.6E-71 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SUPERFAMILY SSF51126 10 297 1.89E-26 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 Pfam PF13229 Right handed beta helix region 95 243 6.2E-13 T 19-04-2016 AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 Gene3D G3DSA:2.160.20.10 11 293 3.8E-20 T 19-04-2016 IPR012334 Pectin lyase fold AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 96 118 45.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 69 94 5900.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 144 179 4700.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 275 296 37.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 180 202 17.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 204 226 3600.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_0559 d8ec490045da26f8afc8d12a28e3e772 443 SMART SM00710 227 252 1000.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 Pfam PF08281 Sigma-70, region 4 109 160 2.2E-16 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 SUPERFAMILY SSF88946 12 92 3.06E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 PANTHER PTHR30173 12 164 1.3E-31 T 19-04-2016 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 162 4.2E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 Pfam PF04542 Sigma-70 region 2 14 80 1.4E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 Gene3D G3DSA:1.10.10.10 105 165 3.9E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 9 165 3.7E-44 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 SUPERFAMILY SSF88659 103 165 3.05E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8173 aa0d058e50289314a0b5fcf61ea470ee 170 Gene3D G3DSA:1.10.1740.10 12 97 2.5E-15 T 19-04-2016 AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 6.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 6.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 211 6.0E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 225 1.5E-24 T 19-04-2016 AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 Gene3D G3DSA:3.40.50.720 3 226 1.5E-36 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3964 898214098b73e8c4e8d7fd58cd96254e 228 SUPERFAMILY SSF51735 3 226 2.19E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 PANTHER PTHR10617:SF101 2 351 3.8E-68 T 19-04-2016 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 Gene3D G3DSA:3.30.9.10 153 317 1.9E-48 T 19-04-2016 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 PANTHER PTHR10617 2 351 3.8E-68 T 19-04-2016 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 Gene3D G3DSA:3.50.50.60 2 152 1.9E-9 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 Pfam PF01494 FAD binding domain 2 162 1.2E-6 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 2 310 2.7E-60 T 19-04-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 SUPERFAMILY SSF51905 2 158 2.0E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0519 ba50d6396b0cd932aa2b90a764bef532 405 SUPERFAMILY SSF51905 262 351 2.0E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3361 83c6932dfe644fc04590b3fd692eed58 169 Gene3D G3DSA:1.20.120.450 5 168 4.2E-29 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_3361 83c6932dfe644fc04590b3fd692eed58 169 SUPERFAMILY SSF109854 4 164 1.1E-33 T 19-04-2016 AMED_3361 83c6932dfe644fc04590b3fd692eed58 169 Pfam PF04978 Protein of unknown function (DUF664) 18 165 2.2E-31 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_8535 d38d0b0d39d0b66b8be304728d702dc0 277 PANTHER PTHR30151 21 277 2.5E-57 T 19-04-2016 AMED_8535 d38d0b0d39d0b66b8be304728d702dc0 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 262 6.8E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8535 d38d0b0d39d0b66b8be304728d702dc0 277 Gene3D G3DSA:1.10.3720.10 74 266 3.5E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8535 d38d0b0d39d0b66b8be304728d702dc0 277 SUPERFAMILY SSF161098 76 256 3.66E-22 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0180 1f5237595a21ba872329de970936dcb0 206 Pfam PF01661 Macro domain 65 190 4.3E-10 T 19-04-2016 IPR002589 Macro domain AMED_0180 1f5237595a21ba872329de970936dcb0 206 SMART SM00506 48 192 2.8E-8 T 19-04-2016 IPR002589 Macro domain AMED_0180 1f5237595a21ba872329de970936dcb0 206 Gene3D G3DSA:3.40.220.10 19 201 2.4E-48 T 19-04-2016 AMED_0180 1f5237595a21ba872329de970936dcb0 206 SUPERFAMILY SSF52949 27 200 1.68E-21 T 19-04-2016 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 PANTHER PTHR33164 14 150 1.2E-25 T 19-04-2016 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 4.2E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 4.2E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 4.2E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 4.2E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 Gene3D G3DSA:1.10.10.10 10 138 5.8E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 SUPERFAMILY SSF46785 13 137 2.26E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 Pfam PF12802 MarR family 32 90 1.0E-13 T 19-04-2016 AMED_0944 158524ed065936bb58c2dab4e9a59a1c 152 SMART SM00347 27 126 2.7E-19 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 Pfam PF00561 alpha/beta hydrolase fold 15 129 4.8E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 PANTHER PTHR10992:SF107 1 126 7.3E-22 T 19-04-2016 AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 SUPERFAMILY SSF53474 3 254 3.21E-32 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 Gene3D G3DSA:3.40.50.1820 4 254 1.5E-29 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 PANTHER PTHR10992:SF107 146 255 7.3E-22 T 19-04-2016 AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 PANTHER PTHR10992 146 255 7.3E-22 T 19-04-2016 AMED_2549 fc0a199d2482ac076c565bebd7a85ea3 257 PANTHER PTHR10992 1 126 7.3E-22 T 19-04-2016 AMED_6282 910d599fef3fcecc2b34b2e611007945 153 Pfam PF02464 Competence-damaged protein 4 150 1.4E-46 T 19-04-2016 IPR008136 CinA, C-terminal AMED_6282 910d599fef3fcecc2b34b2e611007945 153 Gene3D G3DSA:3.90.950.20 4 152 2.0E-53 T 19-04-2016 IPR008136 CinA, C-terminal AMED_6282 910d599fef3fcecc2b34b2e611007945 153 PANTHER PTHR13939 5 153 1.9E-46 T 19-04-2016 AMED_6282 910d599fef3fcecc2b34b2e611007945 153 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 7 149 2.6E-31 T 19-04-2016 IPR008136 CinA, C-terminal AMED_6282 910d599fef3fcecc2b34b2e611007945 153 SUPERFAMILY SSF142433 5 152 1.83E-42 T 19-04-2016 IPR008136 CinA, C-terminal AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.3E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.3E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.3E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 1.3E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.3E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 1.3E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 SUPERFAMILY SSF51735 4 233 1.96E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 Gene3D G3DSA:3.40.50.720 4 233 6.1E-61 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.1E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 3.1E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 3.1E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PANTHER PTHR24322 9 128 4.7E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 PANTHER PTHR24322 146 182 4.7E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3658 df5696f7e3b40169d1020f1958e2631e 235 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 231 3.0E-45 T 19-04-2016 AMED_0539 ecfa53ab462ffd29bbffe1b34a5c1d40 106 PANTHER PTHR33993 1 106 1.1E-20 T 19-04-2016 AMED_0539 ecfa53ab462ffd29bbffe1b34a5c1d40 106 SUPERFAMILY SSF54593 5 104 6.74E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0539 ecfa53ab462ffd29bbffe1b34a5c1d40 106 PANTHER PTHR33993:SF2 1 106 1.1E-20 T 19-04-2016 AMED_0539 ecfa53ab462ffd29bbffe1b34a5c1d40 106 Gene3D G3DSA:3.10.180.10 2 103 2.8E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3856 67349015efe9fcaed77204ae320db203 254 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_3856 67349015efe9fcaed77204ae320db203 254 SUPERFAMILY SSF52096 2 254 8.62E-76 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3856 67349015efe9fcaed77204ae320db203 254 Gene3D G3DSA:3.90.226.10 3 252 2.1E-74 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3856 67349015efe9fcaed77204ae320db203 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 253 1.1E-49 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_3856 67349015efe9fcaed77204ae320db203 254 PANTHER PTHR11941 3 251 2.0E-76 T 19-04-2016 AMED_7552 6e3a2b656af1f153f2732c87dbd127b8 92 Pfam PF04267 Sarcosine oxidase, delta subunit family 3 83 2.4E-37 T 19-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMED_7552 6e3a2b656af1f153f2732c87dbd127b8 92 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 85 3.1E-37 T 19-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 SMART SM00267 240 422 1.8E-27 T 19-04-2016 IPR000160 GGDEF domain AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 PANTHER PTHR10799 291 418 1.9E-21 T 19-04-2016 AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 SUPERFAMILY SSF55073 270 423 1.26E-32 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 Pfam PF00990 Diguanylate cyclase, GGDEF domain 288 418 1.7E-26 T 19-04-2016 IPR000160 GGDEF domain AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 Gene3D G3DSA:3.30.70.270 263 424 1.9E-36 T 19-04-2016 AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 PANTHER PTHR10799:SF750 291 418 1.9E-21 T 19-04-2016 AMED_2896 7890342a0be78a25d9ca4c39d9d7539e 426 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 286 422 1.0E-33 T 19-04-2016 IPR000160 GGDEF domain AMED_8373 77dff287891db034194cc7c497735a79 355 Gene3D G3DSA:3.40.50.300 22 278 3.1E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8373 77dff287891db034194cc7c497735a79 355 PANTHER PTHR24220 24 350 2.9E-123 T 19-04-2016 AMED_8373 77dff287891db034194cc7c497735a79 355 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 256 327 9.6E-17 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8373 77dff287891db034194cc7c497735a79 355 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_8373 77dff287891db034194cc7c497735a79 355 SUPERFAMILY SSF52540 23 275 2.2E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8373 77dff287891db034194cc7c497735a79 355 PANTHER PTHR24220:SF81 24 350 2.9E-123 T 19-04-2016 AMED_8373 77dff287891db034194cc7c497735a79 355 Pfam PF00005 ABC transporter 53 204 5.0E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8373 77dff287891db034194cc7c497735a79 355 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 255 349 1.5E-20 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8373 77dff287891db034194cc7c497735a79 355 SMART SM00382 61 254 2.6E-16 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5652 c00f391ba1a5ccc2391aee199180376b 543 TIGRFAM TIGR04141 TIGR04141: sporadically distributed protein, TIGR04141 family 1 525 2.9E-109 T 19-04-2016 IPR026487 Sporadically distributed protein CHP04141 AMED_6927 8531a001b3abc5a7fd48cfd767ca324f 444 Pfam PF08309 LVIVD repeat 425 438 2.3 T 19-04-2016 IPR013211 LVIVD AMED_6927 8531a001b3abc5a7fd48cfd767ca324f 444 SUPERFAMILY SSF50974 51 244 5.49E-5 T 19-04-2016 IPR011045 Nitrous oxide reductase, N-terminal AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 Pfam PF08281 Sigma-70, region 4 132 183 7.6E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 185 2.0E-22 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 Gene3D G3DSA:1.10.1740.10 26 112 1.7E-19 T 19-04-2016 AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 PANTHER PTHR30173 26 184 3.6E-29 T 19-04-2016 AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 SUPERFAMILY SSF88946 26 98 3.73E-16 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 Gene3D G3DSA:1.10.10.10 124 185 2.7E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 Pfam PF04542 Sigma-70 region 2 30 97 1.4E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8674 d6a8136104ce273f502a8cd1e71970e1 197 SUPERFAMILY SSF88659 123 185 4.58E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_6734 2a6e4b86521d73a92608c3700df329dd 479 PANTHER PTHR10543 263 476 7.6E-139 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_6734 2a6e4b86521d73a92608c3700df329dd 479 PANTHER PTHR10543 3 223 7.6E-139 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_6734 2a6e4b86521d73a92608c3700df329dd 479 Pfam PF03055 Retinal pigment epithelial membrane protein 10 476 1.5E-105 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_6734 2a6e4b86521d73a92608c3700df329dd 479 PANTHER PTHR10543:SF37 263 476 7.6E-139 T 19-04-2016 AMED_6734 2a6e4b86521d73a92608c3700df329dd 479 PANTHER PTHR10543:SF37 3 223 7.6E-139 T 19-04-2016 AMED_2658 782262153da0855d58e8e041e378702d 72 Pfam PF00575 S1 RNA binding domain 11 41 7.1E-5 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_2658 782262153da0855d58e8e041e378702d 72 Gene3D G3DSA:2.40.50.140 3 69 1.9E-10 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2658 782262153da0855d58e8e041e378702d 72 SUPERFAMILY SSF50249 2 69 1.42E-10 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_2658 782262153da0855d58e8e041e378702d 72 SMART SM00316 12 72 6.4E-7 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_7701 5fdca8fb75f1c25560dd10bfc951dced 157 Gene3D G3DSA:3.40.30.10 3 153 2.9E-52 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7701 5fdca8fb75f1c25560dd10bfc951dced 157 PANTHER PTHR10681 3 153 8.0E-54 T 19-04-2016 AMED_7701 5fdca8fb75f1c25560dd10bfc951dced 157 SUPERFAMILY SSF52833 4 153 1.06E-50 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7701 5fdca8fb75f1c25560dd10bfc951dced 157 PIRSF PIRSF000239 1 155 2.4E-20 T 19-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 AMED_7701 5fdca8fb75f1c25560dd10bfc951dced 157 Pfam PF00578 AhpC/TSA family 8 135 3.2E-40 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 Pfam PF03176 MMPL family 80 353 8.9E-38 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 Pfam PF03176 MMPL family 385 682 1.3E-26 T 19-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 PANTHER PTHR33406 91 681 1.4E-85 T 19-04-2016 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 SUPERFAMILY SSF82866 446 682 3.66E-28 T 19-04-2016 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 Gene3D G3DSA:1.20.1640.10 480 684 3.8E-29 T 19-04-2016 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 Gene3D G3DSA:1.20.1640.10 120 324 1.3E-23 T 19-04-2016 AMED_8277 305ebb17c572a8f42034d97c5d2cc994 699 SUPERFAMILY SSF82866 98 322 4.71E-26 T 19-04-2016 AMED_1024 611906695214703e37b69e40d2e651ad 250 SUPERFAMILY SSF55729 132 247 7.38E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1024 611906695214703e37b69e40d2e651ad 250 PANTHER PTHR23091 153 239 4.8E-14 T 19-04-2016 AMED_1024 611906695214703e37b69e40d2e651ad 250 Pfam PF00583 Acetyltransferase (GNAT) family 156 229 4.6E-13 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1024 611906695214703e37b69e40d2e651ad 250 Gene3D G3DSA:3.40.630.30 133 237 9.5E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9011 9ecb2729934838bf3dbbcc89d80ef91c 144 Pfam PF14340 Domain of unknown function (DUF4395) 7 136 1.6E-47 T 19-04-2016 IPR025508 Domain of unknown function DUF4395 AMED_9011 9ecb2729934838bf3dbbcc89d80ef91c 144 PIRSF PIRSF030042 12 143 3.4E-11 T 19-04-2016 IPR016942 Uncharacterised conserved protein UCP030042 AMED_6727 80e5bd03fac80126df8de781ac1ceddd 433 Gene3D G3DSA:1.20.1250.20 251 420 9.4E-13 T 19-04-2016 AMED_6727 80e5bd03fac80126df8de781ac1ceddd 433 Gene3D G3DSA:1.20.1250.20 5 182 1.5E-23 T 19-04-2016 AMED_6727 80e5bd03fac80126df8de781ac1ceddd 433 SUPERFAMILY SSF103473 229 421 1.83E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6727 80e5bd03fac80126df8de781ac1ceddd 433 SUPERFAMILY SSF103473 3 182 1.83E-47 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6727 80e5bd03fac80126df8de781ac1ceddd 433 PANTHER PTHR23501 3 429 2.3E-61 T 19-04-2016 AMED_6727 80e5bd03fac80126df8de781ac1ceddd 433 Pfam PF07690 Major Facilitator Superfamily 3 387 2.9E-43 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1772 e6a44d2cd31a942808a43e941402aa64 314 PANTHER PTHR37042:SF2 80 313 8.6E-26 T 19-04-2016 AMED_1772 e6a44d2cd31a942808a43e941402aa64 314 PANTHER PTHR37042 80 313 8.6E-26 T 19-04-2016 AMED_7616 8ed0be93fd44321569c60173af75720a 396 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 16 289 6.1E-56 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7616 8ed0be93fd44321569c60173af75720a 396 Pfam PF02470 MlaD protein 37 111 2.1E-10 T 19-04-2016 IPR003399 Mce/MlaD AMED_7616 8ed0be93fd44321569c60173af75720a 396 PANTHER PTHR33371 1 391 8.6E-89 T 19-04-2016 AMED_7616 8ed0be93fd44321569c60173af75720a 396 PANTHER PTHR33371:SF7 1 391 8.6E-89 T 19-04-2016 AMED_7616 8ed0be93fd44321569c60173af75720a 396 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 143 375 3.6E-71 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_5854 c4703a67fb210001505713f4f6f15711 257 Gene3D G3DSA:3.50.30.50 17 256 6.2E-54 T 19-04-2016 AMED_5854 c4703a67fb210001505713f4f6f15711 257 Pfam PF04199 Putative cyclase 19 194 9.1E-34 T 19-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 AMED_5854 c4703a67fb210001505713f4f6f15711 257 PANTHER PTHR31118:SF9 17 256 1.0E-59 T 19-04-2016 AMED_5854 c4703a67fb210001505713f4f6f15711 257 SUPERFAMILY SSF102198 16 255 1.28E-49 T 19-04-2016 AMED_5854 c4703a67fb210001505713f4f6f15711 257 PANTHER PTHR31118 17 256 1.0E-59 T 19-04-2016 AMED_5589 372c757daddfa9b10067dfce8dd61592 152 SUPERFAMILY SSF52091 36 142 2.94E-15 T 19-04-2016 IPR002645 STAS domain AMED_5589 372c757daddfa9b10067dfce8dd61592 152 Pfam PF13466 STAS domain 51 126 1.4E-9 T 19-04-2016 IPR002645 STAS domain AMED_5589 372c757daddfa9b10067dfce8dd61592 152 Gene3D G3DSA:3.30.750.24 36 143 5.1E-18 T 19-04-2016 IPR002645 STAS domain AMED_5589 372c757daddfa9b10067dfce8dd61592 152 PANTHER PTHR33495 21 148 2.1E-17 T 19-04-2016 AMED_3896 1a7b5b5f7f5f234a7ef7324afb9a7dfd 169 Gene3D G3DSA:3.40.630.10 65 160 2.5E-5 T 19-04-2016 AMED_3896 1a7b5b5f7f5f234a7ef7324afb9a7dfd 169 PANTHER PTHR11014:SF72 26 164 3.2E-16 T 19-04-2016 AMED_3896 1a7b5b5f7f5f234a7ef7324afb9a7dfd 169 SUPERFAMILY SSF53187 69 159 8.29E-6 T 19-04-2016 AMED_3896 1a7b5b5f7f5f234a7ef7324afb9a7dfd 169 PANTHER PTHR11014 26 164 3.2E-16 T 19-04-2016 AMED_3896 1a7b5b5f7f5f234a7ef7324afb9a7dfd 169 Gene3D G3DSA:3.30.70.360 25 64 4.3E-6 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_4332 60bedcd89a4e832f999f87390555f8d9 469 SUPERFAMILY SSF52200 1 75 7.06E-10 T 19-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMED_4332 60bedcd89a4e832f999f87390555f8d9 469 Gene3D G3DSA:3.40.50.300 174 245 9.8E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4332 60bedcd89a4e832f999f87390555f8d9 469 Gene3D G3DSA:3.40.50.10140 1 73 3.1E-5 T 19-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMED_4332 60bedcd89a4e832f999f87390555f8d9 469 Pfam PF13676 TIR domain 1 81 8.4E-11 T 19-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMED_4332 60bedcd89a4e832f999f87390555f8d9 469 SUPERFAMILY SSF52540 147 376 1.65E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 PANTHER PTHR10314 5 319 3.4E-153 T 19-04-2016 AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 Gene3D G3DSA:3.40.50.1100 110 330 1.9E-74 T 19-04-2016 AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 316 2.3E-45 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 SUPERFAMILY SSF53686 4 329 7.2E-95 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 PIRSF PIRSF006278 1 331 4.7E-119 T 19-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 PANTHER PTHR10314:SF6 5 319 3.4E-153 T 19-04-2016 AMED_6059 182effc17aaf2fb4ef052d6ac5e40e97 331 TIGRFAM TIGR01274 ACC_deam: 1-aminocyclopropane-1-carboxylate deaminase 3 329 8.8E-162 T 19-04-2016 IPR005965 1-aminocyclopropane-1-carboxylate deaminase GO:0008660|GO:0009310|GO:0030170 KEGG: 00270+3.5.99.7 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 307 384 5.7E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 Gene3D G3DSA:3.30.565.10 263 334 1.2E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 Pfam PF07730 Histidine kinase 192 259 3.5E-16 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 PIRSF PIRSF037434 2 385 5.5E-78 T 19-04-2016 IPR017205 Signal transduction histidine kinase, ChrS AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 PANTHER PTHR24421:SF24 5 384 7.6E-58 T 19-04-2016 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 SMART SM00387 297 385 2.6E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 SUPERFAMILY SSF55874 263 384 6.02E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 384 2.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 366 2.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 347 2.3E-5 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 PANTHER PTHR24421 5 384 7.6E-58 T 19-04-2016 AMED_8456 83607217e26fe603ecf9b38b95c07d70 385 Gene3D G3DSA:3.30.565.10 335 384 5.9E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5375 0077be7f92be0f4eaa0174e6f4a213e6 280 Gene3D G3DSA:3.40.50.720 1 180 4.5E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5375 0077be7f92be0f4eaa0174e6f4a213e6 280 Pfam PF00106 short chain dehydrogenase 4 182 7.2E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5375 0077be7f92be0f4eaa0174e6f4a213e6 280 SUPERFAMILY SSF51735 2 185 1.39E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5375 0077be7f92be0f4eaa0174e6f4a213e6 280 PANTHER PTHR24320 1 266 6.9E-78 T 19-04-2016 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 PANTHER PTHR30055:SF19 14 164 3.5E-21 T 19-04-2016 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 74 8.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 SUPERFAMILY SSF46689 15 99 9.98E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 1.7E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 1.7E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 SUPERFAMILY SSF48498 95 195 2.26E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 PANTHER PTHR30055 14 164 3.5E-21 T 19-04-2016 AMED_3603 9840011826aa9c83b3ba87fcd5eea27c 205 Gene3D G3DSA:1.10.357.10 18 204 5.7E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6513 119b3651e09e99b9db8b08a3984fef14 173 Gene3D G3DSA:2.60.120.10 21 155 4.0E-30 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_6513 119b3651e09e99b9db8b08a3984fef14 173 Pfam PF07883 Cupin domain 56 110 2.5E-12 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_6513 119b3651e09e99b9db8b08a3984fef14 173 SUPERFAMILY SSF51182 4 160 5.26E-23 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3188 76b07e00e99abb5b418faf05bf346271 96 SUPERFAMILY SSF46785 12 85 1.04E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3188 76b07e00e99abb5b418faf05bf346271 96 Gene3D G3DSA:1.10.10.10 8 70 1.2E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 PRINTS PR00069 Aldo-keto reductase signature 42 66 6.9E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 PRINTS PR00069 Aldo-keto reductase signature 146 163 6.9E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 PRINTS PR00069 Aldo-keto reductase signature 220 244 6.9E-8 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 PANTHER PTHR11732:SF136 7 305 3.0E-96 T 19-04-2016 AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 Pfam PF00248 Aldo/keto reductase family 20 286 1.0E-40 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 SUPERFAMILY SSF51430 15 289 2.88E-53 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 PANTHER PTHR11732 7 305 3.0E-96 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_1447 3959e8bfd9a546d87ca4ab9324cf9eda 305 Gene3D G3DSA:3.20.20.100 14 290 1.9E-51 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4887 6b10442d731adf8a08296003a322de5e 323 SMART SM00829 10 321 6.5E-10 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_4887 6b10442d731adf8a08296003a322de5e 323 SUPERFAMILY SSF51735 136 276 2.58E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4887 6b10442d731adf8a08296003a322de5e 323 SUPERFAMILY SSF50129 1 165 2.83E-27 T 19-04-2016 IPR011032 GroES-like AMED_4887 6b10442d731adf8a08296003a322de5e 323 Gene3D G3DSA:3.90.180.10 1 162 2.0E-30 T 19-04-2016 IPR011032 GroES-like AMED_4887 6b10442d731adf8a08296003a322de5e 323 Gene3D G3DSA:3.40.50.720 163 266 2.0E-17 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4887 6b10442d731adf8a08296003a322de5e 323 Pfam PF13602 Zinc-binding dehydrogenase 202 321 1.2E-12 T 19-04-2016 AMED_4887 6b10442d731adf8a08296003a322de5e 323 PANTHER PTHR11695 15 323 9.4E-50 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_6519 99b7cb3ce63151243a9a1442ee52ffe6 225 SUPERFAMILY SSF51735 1 195 3.95E-21 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6519 99b7cb3ce63151243a9a1442ee52ffe6 225 PANTHER PTHR15020 1 197 1.7E-24 T 19-04-2016 AMED_6519 99b7cb3ce63151243a9a1442ee52ffe6 225 Pfam PF13460 NAD(P)H-binding 1 183 1.2E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6519 99b7cb3ce63151243a9a1442ee52ffe6 225 Gene3D G3DSA:3.40.50.720 1 194 2.1E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 Pfam PF11896 Domain of unknown function (DUF3416) 3 194 6.3E-58 T 19-04-2016 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 SUPERFAMILY SSF51445 193 561 9.27E-83 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 Gene3D G3DSA:3.20.20.80 189 559 2.5E-67 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 PANTHER PTHR10357 9 138 2.6E-224 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 PANTHER PTHR10357 167 656 2.6E-224 T 19-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 Pfam PF00128 Alpha amylase, catalytic domain 230 315 6.2E-5 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 PANTHER PTHR10357:SF137 9 138 2.6E-224 T 19-04-2016 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 PANTHER PTHR10357:SF137 167 656 2.6E-224 T 19-04-2016 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 1 656 44.027 T 19-04-2016 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 AMED_2596 1a99a83fabda93b2908d11a37ac10fb8 660 SMART SM00642 200 535 2.1E-4 T 19-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMED_9167 b6fdf4d7472590f2ff7b831906d1370a 256 Pfam PF13349 Putative adhesin 120 254 7.7E-13 T 19-04-2016 IPR025164 Putative adhesin AMED_6974 3eeaf32504da51ed92dfd0841449f173 130 Gene3D G3DSA:3.10.180.10 11 128 1.3E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6974 3eeaf32504da51ed92dfd0841449f173 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 123 1.5E-5 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_6974 3eeaf32504da51ed92dfd0841449f173 130 SUPERFAMILY SSF54593 12 128 1.75E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_5084 d7d77edcaa3a73fa72cdd4fccfaa06a6 164 Pfam PF01047 MarR family 31 88 7.8E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5084 d7d77edcaa3a73fa72cdd4fccfaa06a6 164 PANTHER PTHR33164 7 148 1.2E-23 T 19-04-2016 AMED_5084 d7d77edcaa3a73fa72cdd4fccfaa06a6 164 SMART SM00347 24 124 3.2E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5084 d7d77edcaa3a73fa72cdd4fccfaa06a6 164 SUPERFAMILY SSF46785 6 139 3.52E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5084 d7d77edcaa3a73fa72cdd4fccfaa06a6 164 Gene3D G3DSA:1.10.10.10 6 138 6.1E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PANTHER PTHR10992 9 278 4.0E-53 T 19-04-2016 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00412 Epoxide hydrolase signature 52 67 5.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00412 Epoxide hydrolase signature 111 124 5.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00412 Epoxide hydrolase signature 253 275 5.6E-9 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 3.2E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 222 236 3.2E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 3.2E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 3.2E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 Gene3D G3DSA:3.40.50.1820 9 277 7.2E-65 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 SUPERFAMILY SSF53474 6 277 2.3E-64 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7185 e93fc79ddf4cb6c035d3ad145a8f41a9 294 Pfam PF00561 alpha/beta hydrolase fold 25 264 4.0E-29 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 Gene3D G3DSA:1.10.10.10 4 84 2.6E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 SUPERFAMILY SSF46785 2 111 2.59E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 PANTHER PTHR30346:SF2 2 309 6.0E-90 T 19-04-2016 AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 Gene3D G3DSA:3.40.190.10 91 182 2.9E-17 T 19-04-2016 AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 Pfam PF03466 LysR substrate binding domain 91 295 1.7E-39 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.3E-20 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 PANTHER PTHR30346 2 309 6.0E-90 T 19-04-2016 AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 SUPERFAMILY SSF53850 91 299 5.31E-37 T 19-04-2016 AMED_5867 09035e921e27c023e4b88a9aa3b9a904 311 Gene3D G3DSA:3.40.190.10 183 265 2.2E-19 T 19-04-2016 AMED_1848 0b0ceb60c22ba71853be9ff6d809dcd5 97 Gene3D G3DSA:2.60.300.12 1 84 1.9E-11 T 19-04-2016 IPR000361 FeS cluster biogenesis AMED_1848 0b0ceb60c22ba71853be9ff6d809dcd5 97 SUPERFAMILY SSF89360 1 86 7.46E-11 T 19-04-2016 IPR000361 FeS cluster biogenesis AMED_1848 0b0ceb60c22ba71853be9ff6d809dcd5 97 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 84 5.6E-7 T 19-04-2016 IPR000361 FeS cluster biogenesis AMED_4782 90d0239d0413d345872ff3101c4fa956 301 SUPERFAMILY SSF141130 11 298 9.02E-68 T 19-04-2016 AMED_4782 90d0239d0413d345872ff3101c4fa956 301 Gene3D G3DSA:3.10.28.20 228 297 1.4E-20 T 19-04-2016 AMED_4782 90d0239d0413d345872ff3101c4fa956 301 Pfam PF03069 Acetamidase/Formamidase family 17 147 6.1E-8 T 19-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 AMED_4782 90d0239d0413d345872ff3101c4fa956 301 Pfam PF03069 Acetamidase/Formamidase family 153 216 5.6E-15 T 19-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 AMED_4782 90d0239d0413d345872ff3101c4fa956 301 Gene3D G3DSA:2.60.120.580 9 84 8.0E-47 T 19-04-2016 AMED_4782 90d0239d0413d345872ff3101c4fa956 301 Gene3D G3DSA:2.60.120.580 133 217 8.0E-47 T 19-04-2016 AMED_4782 90d0239d0413d345872ff3101c4fa956 301 PANTHER PTHR31891 17 296 3.9E-41 T 19-04-2016 AMED_8222 f2359397b1881d50e07027b62311cfb9 162 Pfam PF09335 SNARE associated Golgi protein 36 156 3.3E-15 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_8222 f2359397b1881d50e07027b62311cfb9 162 PANTHER PTHR30353 1 155 1.8E-24 T 19-04-2016 IPR032818 DedA family AMED_6412 5283e5968afa827235e6f1931e95058b 242 SUPERFAMILY SSF51182 13 115 4.37E-25 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_6412 5283e5968afa827235e6f1931e95058b 242 PANTHER PTHR33570 19 144 1.0E-28 T 19-04-2016 AMED_6412 5283e5968afa827235e6f1931e95058b 242 Pfam PF07883 Cupin domain 159 208 1.7E-6 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_6412 5283e5968afa827235e6f1931e95058b 242 Pfam PF07883 Cupin domain 41 108 3.1E-13 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_6412 5283e5968afa827235e6f1931e95058b 242 PANTHER PTHR33570:SF5 19 144 1.0E-28 T 19-04-2016 AMED_6412 5283e5968afa827235e6f1931e95058b 242 SUPERFAMILY SSF51182 146 233 3.06E-10 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_6412 5283e5968afa827235e6f1931e95058b 242 Gene3D G3DSA:2.60.120.10 13 115 5.6E-23 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_6412 5283e5968afa827235e6f1931e95058b 242 Gene3D G3DSA:2.60.120.10 152 227 1.5E-9 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_4433 1adc45f0d027154d644f35acccd4ba8f 377 Gene3D G3DSA:3.30.360.10 141 318 2.9E-18 T 19-04-2016 AMED_4433 1adc45f0d027154d644f35acccd4ba8f 377 PANTHER PTHR22604 5 319 3.2E-30 T 19-04-2016 AMED_4433 1adc45f0d027154d644f35acccd4ba8f 377 Gene3D G3DSA:3.40.50.720 5 140 8.9E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4433 1adc45f0d027154d644f35acccd4ba8f 377 SUPERFAMILY SSF51735 6 151 3.34E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4433 1adc45f0d027154d644f35acccd4ba8f 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 2.3E-13 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_4433 1adc45f0d027154d644f35acccd4ba8f 377 SUPERFAMILY SSF55347 133 277 1.85E-13 T 19-04-2016 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 SUPERFAMILY SSF48179 163 291 2.04E-33 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 PIRSF PIRSF000103 1 294 4.5E-80 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 282 5.0E-35 T 19-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 291 2.4E-107 T 19-04-2016 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 Gene3D G3DSA:1.10.1040.10 165 290 5.0E-37 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 19-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 PANTHER PTHR22981 1 290 1.3E-100 T 19-04-2016 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 Gene3D G3DSA:3.40.50.720 3 163 6.0E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 2.3E-50 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_7266 56fa03a57d7fa85082094ba6f42b5d9b 303 SUPERFAMILY SSF51735 3 163 8.91E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8263 6287cba42a960c101da46fc476f90636 589 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 316 339 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8263 6287cba42a960c101da46fc476f90636 589 PANTHER PTHR24362 309 571 1.6E-68 T 19-04-2016 AMED_8263 6287cba42a960c101da46fc476f90636 589 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 426 438 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8263 6287cba42a960c101da46fc476f90636 589 Pfam PF00069 Protein kinase domain 310 555 1.2E-43 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8263 6287cba42a960c101da46fc476f90636 589 Gene3D G3DSA:1.10.510.10 373 557 1.7E-38 T 19-04-2016 AMED_8263 6287cba42a960c101da46fc476f90636 589 SUPERFAMILY SSF56112 308 555 8.9E-62 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8263 6287cba42a960c101da46fc476f90636 589 SMART SM00220 310 563 1.6E-46 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8263 6287cba42a960c101da46fc476f90636 589 Gene3D G3DSA:3.30.200.20 307 372 2.6E-22 T 19-04-2016 AMED_8263 6287cba42a960c101da46fc476f90636 589 PANTHER PTHR24362:SF160 309 571 1.6E-68 T 19-04-2016 AMED_5128 6ee6e2a84b780be05329acfb1536594b 220 SUPERFAMILY SSF53474 9 220 1.13E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5128 6ee6e2a84b780be05329acfb1536594b 220 Gene3D G3DSA:3.40.50.1820 9 114 9.7E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5128 6ee6e2a84b780be05329acfb1536594b 220 Gene3D G3DSA:3.40.50.1820 152 219 9.7E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5128 6ee6e2a84b780be05329acfb1536594b 220 Pfam PF12697 Alpha/beta hydrolase family 15 141 1.7E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5128 6ee6e2a84b780be05329acfb1536594b 220 PANTHER PTHR10992 6 220 4.1E-25 T 19-04-2016 AMED_1823 a4eb4f5ad22113b89b173565ada370ff 218 PANTHER PTHR10509 8 211 1.8E-63 T 19-04-2016 AMED_1823 a4eb4f5ad22113b89b173565ada370ff 218 Gene3D G3DSA:3.40.50.150 3 217 3.3E-63 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1823 a4eb4f5ad22113b89b173565ada370ff 218 Pfam PF01596 O-methyltransferase 33 202 3.5E-34 T 19-04-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 AMED_1823 a4eb4f5ad22113b89b173565ada370ff 218 PANTHER PTHR10509:SF31 8 211 1.8E-63 T 19-04-2016 AMED_1823 a4eb4f5ad22113b89b173565ada370ff 218 SUPERFAMILY SSF53335 5 216 1.39E-38 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8724 fbe04d97463e2ce86b8e48652fae355b 217 Gene3D G3DSA:2.60.40.360 120 205 3.4E-7 T 19-04-2016 IPR008962 PapD-like AMED_7436 778294a813331bc8c3985a10b822207a 66 PANTHER PTHR36923 1 64 4.5E-18 T 19-04-2016 AMED_7436 778294a813331bc8c3985a10b822207a 66 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 8.7E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7436 778294a813331bc8c3985a10b822207a 66 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 8.7E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7436 778294a813331bc8c3985a10b822207a 66 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 8.7E-7 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_7436 778294a813331bc8c3985a10b822207a 66 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 62 3.2E-13 T 19-04-2016 AMED_7436 778294a813331bc8c3985a10b822207a 66 Gene3D G3DSA:3.30.70.20 1 65 4.0E-17 T 19-04-2016 AMED_7436 778294a813331bc8c3985a10b822207a 66 PANTHER PTHR36923:SF1 1 64 4.5E-18 T 19-04-2016 AMED_7436 778294a813331bc8c3985a10b822207a 66 SUPERFAMILY SSF54862 2 63 3.12E-14 T 19-04-2016 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 Pfam PF13377 Periplasmic binding protein-like domain 168 331 1.0E-32 T 19-04-2016 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 Gene3D G3DSA:1.10.260.40 4 54 9.4E-24 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 SUPERFAMILY SSF47413 3 60 2.95E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 SMART SM00354 2 72 2.3E-28 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 3.0E-16 T 19-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 PANTHER PTHR30146 2 331 8.5E-101 T 19-04-2016 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 Gene3D G3DSA:3.40.50.2300 172 312 1.0E-45 T 19-04-2016 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 PANTHER PTHR30146:SF30 2 331 8.5E-101 T 19-04-2016 AMED_3327 2faf8842421038aef66470071c5a2fdf 331 SUPERFAMILY SSF53822 59 325 2.17E-61 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3327 2faf8842421038aef66470071c5a2fdf 331 Gene3D G3DSA:3.40.50.2300 55 171 1.3E-34 T 19-04-2016 AMED_5637 b2b84015db631546485e54e07bdb733a 152 SUPERFAMILY SSF55961 3 143 3.57E-7 T 19-04-2016 AMED_5637 b2b84015db631546485e54e07bdb733a 152 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 144 5.3E-6 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_2610 b8a84136f8fb69fe73f8df962999d277 126 PIRSF PIRSF006910 1 124 3.8E-51 T 19-04-2016 IPR016499 Nucleic acid binding protein, Rv2694c, predicted AMED_2610 b8a84136f8fb69fe73f8df962999d277 126 Gene3D G3DSA:2.40.50.140 42 123 1.2E-9 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6022 8010c4bea6483c69bfc2e2c651c83daa 403 SUPERFAMILY SSF63999 188 310 6.41E-17 T 19-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 AMED_6022 8010c4bea6483c69bfc2e2c651c83daa 403 Gene3D G3DSA:3.40.50.10240 192 242 8.9E-4 T 19-04-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 AMED_6022 8010c4bea6483c69bfc2e2c651c83daa 403 Pfam PF12555 Thiamine pyrophosphokinase C terminal 344 395 7.6E-17 T 19-04-2016 IPR022215 Thiamine pyrophosphokinase C-terminal AMED_5812 e94de1b12570d6d16fbd8ebf430914ed 526 Pfam PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) 6 476 6.6E-109 T 19-04-2016 IPR013381 CRISPR-associated protein Cse1 AMED_5812 e94de1b12570d6d16fbd8ebf430914ed 526 TIGRFAM TIGR02547 casA_cse1: CRISPR type I-E/ECOLI-associated protein CasA/Cse1 6 481 1.4E-55 T 19-04-2016 IPR013381 CRISPR-associated protein Cse1 AMED_5302 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 SUPERFAMILY SSF51182 3 143 1.87E-34 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5302 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 Gene3D G3DSA:2.60.120.10 3 145 1.0E-35 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5302 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 Pfam PF06172 Cupin superfamily (DUF985) 6 120 8.7E-28 T 19-04-2016 IPR009327 Cupin domain of unknown function DUF985 AMED_5302 b9a9ee67fd62da18fd7b1fd3065b2b8a 146 PANTHER PTHR33387 1 146 2.6E-29 T 19-04-2016 AMED_7687 d9d34ef236960db856ec5c3faa9a7e98 717 Pfam PF09056 Prokaryotic phospholipase A2 101 181 5.6E-7 T 19-04-2016 IPR015141 Phospholipase A2, prokaryotic/fungal AMED_7687 d9d34ef236960db856ec5c3faa9a7e98 717 Gene3D G3DSA:1.20.90.10 102 179 1.4E-8 T 19-04-2016 IPR016090 Phospholipase A2 domain KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 AMED_7687 d9d34ef236960db856ec5c3faa9a7e98 717 SUPERFAMILY SSF48619 101 182 2.53E-9 T 19-04-2016 IPR016090 Phospholipase A2 domain KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 AMED_2728 34cfa2c1c6d018cceec873b899bf3684 151 Gene3D G3DSA:2.70.70.10 3 149 1.3E-50 T 19-04-2016 AMED_2728 34cfa2c1c6d018cceec873b899bf3684 151 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 67 79 - T 19-04-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- AMED_2728 34cfa2c1c6d018cceec873b899bf3684 151 SUPERFAMILY SSF51261 3 146 1.36E-41 T 19-04-2016 IPR011055 Duplicated hybrid motif AMED_2728 34cfa2c1c6d018cceec873b899bf3684 151 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 4 126 2.3E-44 T 19-04-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- AMED_2728 34cfa2c1c6d018cceec873b899bf3684 151 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 5 123 1.0E-34 T 19-04-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- AMED_2728 34cfa2c1c6d018cceec873b899bf3684 151 PANTHER PTHR30175 1 100 1.9E-29 T 19-04-2016 AMED_3009 335873a9b6659a5b25660f6070403b23 171 Pfam PF04978 Protein of unknown function (DUF664) 8 166 4.2E-18 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_3009 335873a9b6659a5b25660f6070403b23 171 Gene3D G3DSA:1.20.120.450 1 168 4.7E-73 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_3009 335873a9b6659a5b25660f6070403b23 171 SUPERFAMILY SSF109854 4 166 4.58E-34 T 19-04-2016 AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 Pfam PF03561 Allantoicase repeat 192 319 1.7E-31 T 19-04-2016 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697|UniPathway: UPA00395 AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 Pfam PF03561 Allantoicase repeat 23 170 4.9E-41 T 19-04-2016 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697|UniPathway: UPA00395 AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 SUPERFAMILY SSF49785 182 322 7.23E-38 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 SUPERFAMILY SSF49785 10 174 9.78E-51 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 Hamap MF_00813 Probable allantoicase [alc]. 4 322 43.205 T 19-04-2016 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697|UniPathway: UPA00395 AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 TIGRFAM TIGR02961 allantoicase: allantoicase 14 320 2.3E-107 T 19-04-2016 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697|UniPathway: UPA00395 AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 PANTHER PTHR12045 1 332 1.1E-106 T 19-04-2016 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697|UniPathway: UPA00395 AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 Gene3D G3DSA:2.60.120.260 7 173 1.9E-52 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1931 28ea55ae4f97f985fe66940f5962d208 337 Gene3D G3DSA:2.60.120.260 183 323 9.8E-37 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5487 02397f1bee660069d6d3924439233f3f 173 Gene3D G3DSA:3.40.50.360 1 170 7.4E-23 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5487 02397f1bee660069d6d3924439233f3f 173 SUPERFAMILY SSF52218 1 170 1.08E-14 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5487 02397f1bee660069d6d3924439233f3f 173 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 19-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AMED_0628 47ae524587a5d932ced3b176017b93cd 358 PANTHER PTHR22604 3 266 7.5E-41 T 19-04-2016 AMED_0628 47ae524587a5d932ced3b176017b93cd 358 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 189 1.9E-6 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_0628 47ae524587a5d932ced3b176017b93cd 358 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 114 3.0E-21 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_0628 47ae524587a5d932ced3b176017b93cd 358 Gene3D G3DSA:3.30.360.10 140 348 1.0E-26 T 19-04-2016 AMED_0628 47ae524587a5d932ced3b176017b93cd 358 SUPERFAMILY SSF55347 132 301 1.8E-20 T 19-04-2016 AMED_0628 47ae524587a5d932ced3b176017b93cd 358 SUPERFAMILY SSF51735 3 150 7.36E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0628 47ae524587a5d932ced3b176017b93cd 358 Gene3D G3DSA:3.40.50.720 3 139 5.2E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 SUPERFAMILY SSF54211 4 124 5.69E-39 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 72 101 - T 19-04-2016 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 Gene3D G3DSA:3.30.230.30 3 124 3.0E-44 T 19-04-2016 IPR001498 Impact, N-terminal AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 Gene3D G3DSA:3.30.70.240 131 199 3.8E-6 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 SUPERFAMILY SSF54980 131 190 2.16E-7 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 Pfam PF09186 Domain of unknown function (DUF1949) 133 187 1.2E-10 T 19-04-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 Pfam PF01205 Uncharacterized protein family UPF0029 12 116 3.8E-27 T 19-04-2016 IPR001498 Impact, N-terminal AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 3 189 5.4E-55 T 19-04-2016 IPR015796 Impact family, bacterial/archaeal AMED_7035 9ae7ba6d220193d55eeb703bc166e54c 208 PANTHER PTHR16301 7 189 1.6E-51 T 19-04-2016 IPR023582 Impact family AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 Gene3D G3DSA:1.10.10.10 92 153 1.1E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 SUPERFAMILY SSF88659 89 151 3.18E-17 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 PANTHER PTHR30173 9 165 2.4E-28 T 19-04-2016 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 151 3.2E-21 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 Pfam PF04542 Sigma-70 region 2 9 64 4.6E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 TIGRFAM TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family 2 153 6.6E-47 T 19-04-2016 IPR014325 RNA polymerase sigma-E factor, actinobacteria GO:0016987 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 Pfam PF08281 Sigma-70, region 4 95 147 7.4E-18 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 Gene3D G3DSA:1.10.1740.10 3 67 4.9E-11 T 19-04-2016 AMED_1449 0b833406fc9aa8d64af6067c51a3ec38 165 SUPERFAMILY SSF88946 8 74 2.31E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1877 f635880184fe487fc247a5e16a4e8b06 191 PANTHER PTHR30055 3 185 2.8E-27 T 19-04-2016 AMED_1877 f635880184fe487fc247a5e16a4e8b06 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 4.2E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1877 f635880184fe487fc247a5e16a4e8b06 191 Gene3D G3DSA:1.10.357.10 9 189 2.0E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1877 f635880184fe487fc247a5e16a4e8b06 191 SUPERFAMILY SSF48498 94 188 1.53E-6 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1877 f635880184fe487fc247a5e16a4e8b06 191 PANTHER PTHR30055:SF19 3 185 2.8E-27 T 19-04-2016 AMED_1877 f635880184fe487fc247a5e16a4e8b06 191 SUPERFAMILY SSF46689 12 81 2.03E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0509 8a160c568feafca2720f00034b5a754d 307 SUPERFAMILY SSF52096 37 304 5.23E-75 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0509 8a160c568feafca2720f00034b5a754d 307 Gene3D G3DSA:3.90.226.10 37 243 1.7E-67 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_0509 8a160c568feafca2720f00034b5a754d 307 PANTHER PTHR11941:SF20 11 300 9.5E-155 T 19-04-2016 AMED_0509 8a160c568feafca2720f00034b5a754d 307 Gene3D G3DSA:1.10.12.10 245 295 2.9E-27 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_0509 8a160c568feafca2720f00034b5a754d 307 PANTHER PTHR11941 11 300 9.5E-155 T 19-04-2016 AMED_0509 8a160c568feafca2720f00034b5a754d 307 TIGRFAM TIGR01929 menB: naphthoate synthase 23 301 5.1E-128 T 19-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 AMED_0509 8a160c568feafca2720f00034b5a754d 307 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 306 52.604 T 19-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 AMED_0509 8a160c568feafca2720f00034b5a754d 307 Pfam PF00378 Enoyl-CoA hydratase/isomerase 38 302 1.5E-52 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_9264 a6e163901d9892b49271bbfca8bb3b32 249 Pfam PF12730 ABC-2 family transporter protein 3 175 1.8E-6 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 200 214 - T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 Gene3D G3DSA:3.40.50.300 109 344 6.0E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 SMART SM00382 129 263 1.7E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 10 349 1.1E-131 T 19-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 Pfam PF00437 Type II/IV secretion system protein 128 269 4.6E-38 T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 SUPERFAMILY SSF52540 8 341 5.78E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 PANTHER PTHR30486 12 352 2.8E-134 T 19-04-2016 AMED_4452 8a7bbb12b7f0c29422eec62c2a295cd3 362 PANTHER PTHR30486:SF5 12 352 2.8E-134 T 19-04-2016 AMED_1179 22d2ba200611324e2ba09a637095c978 192 SUPERFAMILY SSF88946 33 118 2.59E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1179 22d2ba200611324e2ba09a637095c978 192 PANTHER PTHR30173:SF17 6 191 2.0E-37 T 19-04-2016 AMED_1179 22d2ba200611324e2ba09a637095c978 192 Pfam PF04542 Sigma-70 region 2 35 103 3.8E-13 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1179 22d2ba200611324e2ba09a637095c978 192 PANTHER PTHR30173 6 191 2.0E-37 T 19-04-2016 AMED_1179 22d2ba200611324e2ba09a637095c978 192 Pfam PF08281 Sigma-70, region 4 132 182 3.6E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1179 22d2ba200611324e2ba09a637095c978 192 Gene3D G3DSA:1.10.10.10 128 188 7.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1179 22d2ba200611324e2ba09a637095c978 192 Gene3D G3DSA:1.10.1740.10 35 106 3.0E-16 T 19-04-2016 AMED_1179 22d2ba200611324e2ba09a637095c978 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 186 2.9E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_1179 22d2ba200611324e2ba09a637095c978 192 SUPERFAMILY SSF88659 125 187 1.63E-13 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3279 9fe4236584947632483d3fc064dbf285 410 Pfam PF01566 Natural resistance-associated macrophage protein 31 378 2.0E-48 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_2085 b4b12e0fea41a056e924f31d0c8be741 433 Pfam PF07730 Histidine kinase 247 313 2.6E-11 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2085 b4b12e0fea41a056e924f31d0c8be741 433 PANTHER PTHR24421 192 430 1.2E-57 T 19-04-2016 AMED_2085 b4b12e0fea41a056e924f31d0c8be741 433 Pfam PF13796 Putative sensor 42 219 1.8E-26 T 19-04-2016 IPR025828 Putative sensor domain AMED_2085 b4b12e0fea41a056e924f31d0c8be741 433 Gene3D G3DSA:3.30.565.10 348 431 1.6E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2085 b4b12e0fea41a056e924f31d0c8be741 433 PANTHER PTHR24421:SF13 192 430 1.2E-57 T 19-04-2016 AMED_2085 b4b12e0fea41a056e924f31d0c8be741 433 SUPERFAMILY SSF55874 326 431 6.02E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 Pfam PF13191 AAA ATPase domain 7 164 7.9E-21 T 19-04-2016 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 PANTHER PTHR16305 4 845 2.0E-91 T 19-04-2016 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 SMART SM00421 852 909 1.8E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 Gene3D G3DSA:3.40.50.300 111 176 7.2E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 Gene3D G3DSA:3.40.50.300 13 72 7.2E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 SUPERFAMILY SSF52540 4 232 6.55E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 SUPERFAMILY SSF46894 842 910 3.74E-16 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 885 1.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 855 869 1.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 885 897 1.8E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 PANTHER PTHR16305:SF28 4 845 2.0E-91 T 19-04-2016 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 Pfam PF00196 Bacterial regulatory proteins, luxR family 854 906 2.4E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3507 d707a3b688eab40d7fa8394b942a53b5 916 Gene3D G3DSA:1.10.10.10 851 909 1.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9183 700f36c39823ab9653b49388c6d98634 395 PANTHER PTHR30173 6 368 2.3E-124 T 19-04-2016 AMED_9183 700f36c39823ab9653b49388c6d98634 395 SUPERFAMILY SSF88659 101 160 1.78E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9183 700f36c39823ab9653b49388c6d98634 395 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 160 5.8E-12 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9183 700f36c39823ab9653b49388c6d98634 395 PANTHER PTHR30173:SF7 6 368 2.3E-124 T 19-04-2016 AMED_9183 700f36c39823ab9653b49388c6d98634 395 Pfam PF04542 Sigma-70 region 2 11 78 1.8E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9183 700f36c39823ab9653b49388c6d98634 395 Gene3D G3DSA:1.10.1740.10 3 79 4.6E-13 T 19-04-2016 AMED_9183 700f36c39823ab9653b49388c6d98634 395 SUPERFAMILY SSF88946 5 83 1.41E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9183 700f36c39823ab9653b49388c6d98634 395 Pfam PF08281 Sigma-70, region 4 108 158 2.0E-7 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_9183 700f36c39823ab9653b49388c6d98634 395 Gene3D G3DSA:1.10.10.10 101 160 4.1E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 378 5.4E-134 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 Gene3D G3DSA:3.40.47.10 264 379 2.0E-48 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 Gene3D G3DSA:3.40.47.10 147 185 2.0E-48 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 Pfam PF00108 Thiolase, N-terminal domain 5 249 2.6E-71 T 19-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 PIRSF PIRSF000429 1 381 5.7E-121 T 19-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 Pfam PF02803 Thiolase, C-terminal domain 258 378 2.9E-38 T 19-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 Gene3D G3DSA:3.40.47.10 3 124 7.4E-69 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 Gene3D G3DSA:3.40.47.10 186 262 7.4E-69 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 SUPERFAMILY SSF53901 3 257 4.51E-77 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 ProSitePatterns PS00737 Thiolases signature 2. 326 342 - T 19-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 PANTHER PTHR18919 1 381 1.7E-185 T 19-04-2016 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 SUPERFAMILY SSF53901 258 379 2.21E-38 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7190 98b30d7f060d0d2223f6bbc1f670bb04 381 PANTHER PTHR18919:SF71 1 381 1.7E-185 T 19-04-2016 AMED_4699 2d2437d299e843793356b5d61510a919 161 SUPERFAMILY SSF55136 4 123 4.01E-8 T 19-04-2016 IPR011256 Regulatory factor, effector binding domain AMED_4699 2d2437d299e843793356b5d61510a919 161 Gene3D G3DSA:3.20.80.10 34 156 5.0E-4 T 19-04-2016 IPR011256 Regulatory factor, effector binding domain AMED_4699 2d2437d299e843793356b5d61510a919 161 Pfam PF06445 GyrI-like small molecule binding domain 61 159 6.0E-6 T 19-04-2016 IPR029442 GyrI-like small molecule binding domain AMED_0408 99e4054dd0fcc1c0bcd91965de5b1779 288 PANTHER PTHR36151 12 256 6.9E-53 T 19-04-2016 AMED_0408 99e4054dd0fcc1c0bcd91965de5b1779 288 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 12 241 1.1E-50 T 19-04-2016 IPR018713 Domain of unknown function DUF2236 AMED_0408 99e4054dd0fcc1c0bcd91965de5b1779 288 PANTHER PTHR36151:SF3 12 256 6.9E-53 T 19-04-2016 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 237 269 - T 19-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 35 435 1.5E-140 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 Gene3D G3DSA:3.40.50.1980 29 247 1.5E-75 T 19-04-2016 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 7 436 38.685 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 Pfam PF00815 Histidinol dehydrogenase 22 436 3.2E-155 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 370 388 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 208 233 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 259 278 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 35 59 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 173 199 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 136 162 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 237 258 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PRINTS PR00083 Histidinol dehydrogenase signature 329 354 2.0E-89 T 19-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 SUPERFAMILY SSF53720 23 436 8.44E-70 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PIRSF PIRSF000099 1 438 6.0E-151 T 19-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 AMED_2251 c8e23a0ddc01701677b4d4b470af5815 441 PANTHER PTHR21256 1 441 4.4E-180 T 19-04-2016 AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 Gene3D G3DSA:3.30.450.20 171 288 2.0E-23 T 19-04-2016 AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 Gene3D G3DSA:3.20.20.450 483 717 1.6E-43 T 19-04-2016 IPR001633 EAL domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 SUPERFAMILY SSF55785 166 288 6.0E-23 T 19-04-2016 IPR000014 PAS domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 173 297 8.7E-19 T 19-04-2016 IPR000014 PAS domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 SUPERFAMILY SSF141868 484 719 1.83E-38 T 19-04-2016 IPR001633 EAL domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 Pfam PF00990 Diguanylate cyclase, GGDEF domain 303 459 4.5E-33 T 19-04-2016 IPR000160 GGDEF domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 Pfam PF00563 EAL domain 486 709 5.7E-35 T 19-04-2016 IPR001633 EAL domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 299 463 8.5E-25 T 19-04-2016 IPR000160 GGDEF domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 Pfam PF00989 PAS fold 178 288 2.8E-16 T 19-04-2016 IPR013767 PAS fold GO:0006355 AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 SMART SM00267 292 464 9.4E-40 T 19-04-2016 IPR000160 GGDEF domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 PANTHER PTHR10799:SF710 190 575 2.9E-31 T 19-04-2016 AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 PANTHER PTHR10799 190 575 2.9E-31 T 19-04-2016 AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 SUPERFAMILY SSF55073 308 466 3.14E-34 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 SMART SM00052 474 716 2.0E-10 T 19-04-2016 IPR001633 EAL domain AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 Gene3D G3DSA:3.30.70.270 305 468 1.8E-40 T 19-04-2016 AMED_8278 d3f0d6369c24cbc057a226ead7ad8106 724 SMART SM00091 177 243 1.5E-10 T 19-04-2016 IPR000014 PAS domain AMED_4896 b40a6a85a109bb6dd42157e7f2ac9d36 500 PANTHER PTHR42307:SF2 1 498 1.3E-223 T 19-04-2016 AMED_4896 b40a6a85a109bb6dd42157e7f2ac9d36 500 TIGRFAM TIGR03688 pupylate_PafA2: proteasome accessory factor PafA2 2 485 6.7E-232 T 19-04-2016 IPR022366 Pup deamidase GO:0008233|GO:0016811 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00997 AMED_4896 b40a6a85a109bb6dd42157e7f2ac9d36 500 PIRSF PIRSF018077 8 496 1.7E-203 T 19-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 AMED_4896 b40a6a85a109bb6dd42157e7f2ac9d36 500 PANTHER PTHR42307 1 498 1.3E-223 T 19-04-2016 AMED_4896 b40a6a85a109bb6dd42157e7f2ac9d36 500 Pfam PF03136 Pup-ligase protein 3 454 7.4E-181 T 19-04-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 AMED_2357 70f82bb01928df785ea989d80fe62da8 236 PANTHER PTHR37314:SF1 1 217 1.0E-29 T 19-04-2016 AMED_2357 70f82bb01928df785ea989d80fe62da8 236 PANTHER PTHR37314 1 217 1.0E-29 T 19-04-2016 AMED_2357 70f82bb01928df785ea989d80fe62da8 236 Pfam PF06912 Protein of unknown function (DUF1275) 12 210 4.0E-36 T 19-04-2016 IPR010699 Protein of unknown function DUF1275 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 Gene3D G3DSA:3.20.20.70 4 301 9.2E-72 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 PIRSF PIRSF001365 6 301 4.9E-57 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 Pfam PF00701 Dihydrodipicolinate synthetase family 10 296 1.6E-40 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 PANTHER PTHR12128 1 301 3.1E-69 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 SMART SM01130 9 299 1.6E-57 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 PANTHER PTHR12128:SF34 1 301 3.1E-69 T 19-04-2016 AMED_8975 b6722e37555497dfa53f925a0b9a3d91 301 SUPERFAMILY SSF51569 8 301 2.72E-62 T 19-04-2016 AMED_3746 2b8a8a35c7978805dc93e94843b1f718 282 PANTHER PTHR30146:SF45 9 281 2.7E-73 T 19-04-2016 AMED_3746 2b8a8a35c7978805dc93e94843b1f718 282 SUPERFAMILY SSF53822 8 265 2.55E-53 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3746 2b8a8a35c7978805dc93e94843b1f718 282 Pfam PF13377 Periplasmic binding protein-like domain 124 278 3.2E-29 T 19-04-2016 AMED_3746 2b8a8a35c7978805dc93e94843b1f718 282 Gene3D G3DSA:3.40.50.2300 7 125 5.3E-21 T 19-04-2016 AMED_3746 2b8a8a35c7978805dc93e94843b1f718 282 PANTHER PTHR30146 9 281 2.7E-73 T 19-04-2016 AMED_3746 2b8a8a35c7978805dc93e94843b1f718 282 Gene3D G3DSA:3.40.50.2300 126 259 3.2E-36 T 19-04-2016 AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PRINTS PR00069 Aldo-keto reductase signature 41 65 5.0E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PRINTS PR00069 Aldo-keto reductase signature 136 153 5.0E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PRINTS PR00069 Aldo-keto reductase signature 105 123 5.0E-5 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PANTHER PTHR11732:SF273 1 211 2.6E-150 T 19-04-2016 AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PANTHER PTHR11732:SF273 232 338 2.6E-150 T 19-04-2016 AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 Pfam PF00248 Aldo/keto reductase family 16 313 2.3E-70 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 SUPERFAMILY SSF51430 1 314 3.27E-95 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PANTHER PTHR11732 1 211 2.6E-150 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 PANTHER PTHR11732 232 338 2.6E-150 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_7441 a3febd5bfa1738edade8d058157fba5f 340 Gene3D G3DSA:3.20.20.100 1 313 1.0E-90 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 Gene3D G3DSA:3.90.550.10 1 248 3.0E-33 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 Pfam PF00535 Glycosyl transferase family 2 1 182 1.0E-16 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 PANTHER PTHR22916:SF26 1 135 1.5E-41 T 19-04-2016 AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 PANTHER PTHR22916 159 252 1.5E-41 T 19-04-2016 AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 PANTHER PTHR22916 1 135 1.5E-41 T 19-04-2016 AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 SUPERFAMILY SSF53448 1 245 5.63E-39 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1014 156b74ffb146f0ad9274c80945de73d0 273 PANTHER PTHR22916:SF26 159 252 1.5E-41 T 19-04-2016 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 22 41 5.4E-10 T 19-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 41 59 5.4E-10 T 19-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 2 22 5.4E-10 T 19-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 5 83 8.9E-17 T 19-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 Pfam PF02416 mttA/Hcf106 family 5 41 1.1E-4 T 19-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 PANTHER PTHR33162:SF4 2 93 5.9E-14 T 19-04-2016 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 PANTHER PTHR33162 2 93 5.9E-14 T 19-04-2016 AMED_1070 cae0ac4a01f05a628e3a0ed65d48e032 140 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 2 138 13.954 T 19-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 Gene3D G3DSA:3.30.300.30 435 532 1.1E-28 T 19-04-2016 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 Gene3D G3DSA:3.40.50.980 193 335 8.9E-31 T 19-04-2016 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 524 2.9E-21 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 Gene3D G3DSA:2.30.38.10 358 434 5.5E-21 T 19-04-2016 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 PANTHER PTHR24096 1 535 4.2E-209 T 19-04-2016 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 Pfam PF00501 AMP-binding enzyme 21 440 6.4E-83 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 PANTHER PTHR24096:SF53 1 535 4.2E-209 T 19-04-2016 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 SUPERFAMILY SSF56801 7 532 3.66E-131 T 19-04-2016 AMED_3998 eaad7bda6206da4d12da40264b753bc3 537 Gene3D G3DSA:3.40.50.980 9 192 2.6E-26 T 19-04-2016 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 Gene3D G3DSA:3.40.390.10 36 165 8.8E-37 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 Pfam PF02031 Streptomyces extracellular neutral proteinase (M7) family 36 167 3.8E-66 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 SUPERFAMILY SSF55486 37 164 2.78E-28 T 19-04-2016 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 152 166 1.4E-51 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 75 99 1.4E-51 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 100 124 1.4E-51 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 42 68 1.4E-51 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 PRINTS PR00787 Streptomyces extracellular neutral proteinase (M7) family signature 125 149 1.4E-51 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_3414 522347e0c2068ebd1d96f48dd6e0815c 184 ProDom PD016028 PROTEASE METALLOPROTEASE EXTRACELLULAR NEUTRAL SMALL METAL-BINDING ZINC HYDROLASE SNAPALYSIN ZYMOGEN 45 167 1.0E-47 T 19-04-2016 IPR000013 Peptidase M7, snapalysin GO:0004222|GO:0005576|GO:0006508|GO:0008270 AMED_4790 cf75be025c47a39840c41b2ee1eb6960 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 264 7.7E-7 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4790 cf75be025c47a39840c41b2ee1eb6960 279 Gene3D G3DSA:1.10.3720.10 2 265 6.0E-28 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4790 cf75be025c47a39840c41b2ee1eb6960 279 PANTHER PTHR30193 1 276 1.9E-29 T 19-04-2016 AMED_4790 cf75be025c47a39840c41b2ee1eb6960 279 SUPERFAMILY SSF161098 36 264 5.76E-31 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6830 f959b04917ee269fc74d5ce75cbee416 669 PANTHER PTHR34820:SF2 59 341 3.2E-13 T 19-04-2016 AMED_6830 f959b04917ee269fc74d5ce75cbee416 669 Pfam PF05425 Copper resistance protein D 239 335 6.2E-20 T 19-04-2016 IPR008457 Copper resistance protein D GO:0016021 AMED_6830 f959b04917ee269fc74d5ce75cbee416 669 PANTHER PTHR34820 59 341 3.2E-13 T 19-04-2016 AMED_6830 f959b04917ee269fc74d5ce75cbee416 669 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 388 632 3.7E-88 T 19-04-2016 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related AMED_1426 59632237eb02e8789dc82db2266bb393 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1426 59632237eb02e8789dc82db2266bb393 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.1E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1426 59632237eb02e8789dc82db2266bb393 188 PANTHER PTHR30055:SF75 1 175 1.7E-25 T 19-04-2016 AMED_1426 59632237eb02e8789dc82db2266bb393 188 PANTHER PTHR30055 1 175 1.7E-25 T 19-04-2016 AMED_1426 59632237eb02e8789dc82db2266bb393 188 Gene3D G3DSA:1.10.10.60 11 54 3.0E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1426 59632237eb02e8789dc82db2266bb393 188 Gene3D G3DSA:1.10.357.10 55 183 8.3E-17 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1426 59632237eb02e8789dc82db2266bb393 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 9.0E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1426 59632237eb02e8789dc82db2266bb393 188 SUPERFAMILY SSF46689 11 73 7.7E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6618 76830a1ff3f8738d7db9bdcec44cc5bc 151 Pfam PF10825 Protein of unknown function (DUF2752) 54 100 9.1E-19 T 19-04-2016 IPR021215 Protein of unknown function DUF2752 AMED_9307 89473d269ced9f37e6954fd846316eea 256 PANTHER PTHR30096 1 244 1.1E-95 T 19-04-2016 AMED_9307 89473d269ced9f37e6954fd846316eea 256 PANTHER PTHR30096:SF0 1 244 1.1E-95 T 19-04-2016 AMED_9307 89473d269ced9f37e6954fd846316eea 256 SUPERFAMILY SSF53213 3 252 3.92E-85 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_9307 89473d269ced9f37e6954fd846316eea 256 PIRSF PIRSF006157 1 256 4.6E-86 T 19-04-2016 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type GO:0008270|GO:0016701|GO:0055114 AMED_9307 89473d269ced9f37e6954fd846316eea 256 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 21 236 4.3E-45 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_9307 89473d269ced9f37e6954fd846316eea 256 Gene3D G3DSA:3.40.830.10 1 248 7.0E-90 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:3.20.20.140 194 485 9.1E-29 T 19-04-2016 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:3.20.20.140 59 78 9.1E-29 T 19-04-2016 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 SUPERFAMILY SSF51556 192 492 5.3E-30 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6971 84273e3a919b3190f02613101f4d03ae 536 SUPERFAMILY SSF51556 55 93 5.3E-30 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6971 84273e3a919b3190f02613101f4d03ae 536 SUPERFAMILY SSF51338 3 56 1.02E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 SUPERFAMILY SSF51338 492 535 1.02E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:2.30.40.10 2 57 3.2E-16 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 Gene3D G3DSA:2.30.40.10 492 533 3.2E-16 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 Pfam PF07969 Amidohydrolase family 44 532 2.5E-81 T 19-04-2016 IPR013108 Amidohydrolase 3 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 PANTHER PTHR22642:SF2 1 532 8.2E-123 T 19-04-2016 AMED_6971 84273e3a919b3190f02613101f4d03ae 536 PANTHER PTHR22642 1 532 8.2E-123 T 19-04-2016 AMED_3123 205df16432b222cb562195fed004328f 243 PANTHER PTHR31302 1 132 6.5E-14 T 19-04-2016 AMED_3123 205df16432b222cb562195fed004328f 243 PANTHER PTHR31302 185 205 6.5E-14 T 19-04-2016 AMED_3123 205df16432b222cb562195fed004328f 243 PANTHER PTHR31302 150 168 6.5E-14 T 19-04-2016 AMED_3123 205df16432b222cb562195fed004328f 243 PIRSF PIRSF008292 1 234 8.1E-88 T 19-04-2016 IPR016538 Uncharacterised conserved protein UCP008292 AMED_3123 205df16432b222cb562195fed004328f 243 Pfam PF00149 Calcineurin-like phosphoesterase 1 203 1.2E-13 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_3123 205df16432b222cb562195fed004328f 243 SUPERFAMILY SSF56300 1 238 3.28E-32 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_3123 205df16432b222cb562195fed004328f 243 Gene3D G3DSA:3.60.21.10 1 239 3.2E-27 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_5122 59040b95a41f3a354273c2c8d0a410fa 299 PANTHER PTHR35333 3 299 9.1E-27 T 19-04-2016 AMED_5122 59040b95a41f3a354273c2c8d0a410fa 299 Pfam PF13354 Beta-lactamase enzyme family 27 266 1.6E-38 T 19-04-2016 AMED_5122 59040b95a41f3a354273c2c8d0a410fa 299 Gene3D G3DSA:3.40.710.10 183 296 3.3E-40 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5122 59040b95a41f3a354273c2c8d0a410fa 299 Gene3D G3DSA:3.40.710.10 3 151 3.3E-40 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5122 59040b95a41f3a354273c2c8d0a410fa 299 SUPERFAMILY SSF56601 183 271 5.22E-30 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_5122 59040b95a41f3a354273c2c8d0a410fa 299 SUPERFAMILY SSF56601 5 151 5.22E-30 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6521 e415b32e906016d972b0ed86fdc57e04 168 Gene3D G3DSA:1.10.10.10 30 161 2.2E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6521 e415b32e906016d972b0ed86fdc57e04 168 SUPERFAMILY SSF46785 30 159 3.22E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6521 e415b32e906016d972b0ed86fdc57e04 168 PANTHER PTHR33164 35 157 3.1E-16 T 19-04-2016 AMED_6521 e415b32e906016d972b0ed86fdc57e04 168 SMART SM00347 50 150 2.6E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6521 e415b32e906016d972b0ed86fdc57e04 168 Pfam PF12802 MarR family 57 113 6.4E-10 T 19-04-2016 AMED_6554 cebc232a9b1f338260c9a677eb1490eb 80 Gene3D G3DSA:1.20.1260.10 24 75 1.4E-4 T 19-04-2016 IPR012347 Ferritin-related AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 195 7.5E-43 T 19-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 PANTHER PTHR30546:SF0 3 204 2.5E-54 T 19-04-2016 AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 SUPERFAMILY SSF52218 3 193 6.42E-49 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 Pfam PF03358 NADPH-dependent FMN reductase 4 148 6.5E-12 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 PANTHER PTHR30546 3 204 2.5E-54 T 19-04-2016 AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 ProSitePatterns PS00201 Flavodoxin signature. 7 23 - T 19-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AMED_6293 f55e5bcbaf8294f8ab7e22944bd7323d 204 Gene3D G3DSA:3.40.50.360 3 197 2.3E-58 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 510 528 - T 19-04-2016 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 Pfam PF00145 C-5 cytosine-specific DNA methylase 9 192 1.4E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 Gene3D G3DSA:3.90.120.10 416 518 3.6E-9 T 19-04-2016 AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 SUPERFAMILY SSF53335 6 210 1.95E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 SUPERFAMILY SSF53335 429 531 1.95E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 SUPERFAMILY SSF53335 266 290 1.95E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6151 e8ab124f93889605d102e348a1bd9c18 541 Gene3D G3DSA:3.40.50.150 3 198 7.6E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6595 e2dcbc3efe05a32b47be628a3d191d2a 178 SUPERFAMILY SSF109854 6 173 1.19E-47 T 19-04-2016 AMED_6595 e2dcbc3efe05a32b47be628a3d191d2a 178 Pfam PF04978 Protein of unknown function (DUF664) 21 174 1.7E-43 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_6595 e2dcbc3efe05a32b47be628a3d191d2a 178 Gene3D G3DSA:1.20.120.450 3 177 8.8E-54 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_6752 9ba5abeaab60c99ae6133c4da2f83df3 254 Gene3D G3DSA:2.60.120.10 74 196 1.8E-4 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_6752 9ba5abeaab60c99ae6133c4da2f83df3 254 SUPERFAMILY SSF51182 38 136 4.26E-10 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_6752 9ba5abeaab60c99ae6133c4da2f83df3 254 SUPERFAMILY SSF51182 165 212 4.26E-10 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5848 1febc428cda72d42105ab931793e8859 476 SMART SM00327 46 224 1.3E-8 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_5848 1febc428cda72d42105ab931793e8859 476 Pfam PF13768 von Willebrand factor type A domain 51 206 5.7E-14 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_5848 1febc428cda72d42105ab931793e8859 476 Gene3D G3DSA:3.40.50.410 51 203 1.5E-9 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_5848 1febc428cda72d42105ab931793e8859 476 SUPERFAMILY SSF53300 46 215 5.04E-22 T 19-04-2016 IPR002035 von Willebrand factor, type A AMED_7751 5c736accb0acb11b280c912f6894bb14 565 Pfam PF00474 Sodium:solute symporter family 45 465 7.4E-50 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_7751 5c736accb0acb11b280c912f6894bb14 565 PANTHER PTHR11819:SF7 14 535 2.4E-134 T 19-04-2016 AMED_7751 5c736accb0acb11b280c912f6894bb14 565 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 160 185 - T 19-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AMED_7751 5c736accb0acb11b280c912f6894bb14 565 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 45 465 5.7E-76 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_7751 5c736accb0acb11b280c912f6894bb14 565 PANTHER PTHR11819 14 535 2.4E-134 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 Gene3D G3DSA:3.20.20.140 127 280 3.2E-41 T 19-04-2016 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 Gene3D G3DSA:3.20.20.140 6 91 3.2E-41 T 19-04-2016 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 PANTHER PTHR32294 104 1190 0.0 T 19-04-2016 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 PANTHER PTHR32294 2 86 0.0 T 19-04-2016 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 Pfam PF14579 Helix-hairpin-helix motif 842 928 7.6E-25 T 19-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 Pfam PF02811 PHP domain 8 200 3.8E-48 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 322 762 3.2E-158 T 19-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1070 0.0 T 19-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 SMART SM00481 7 74 9.4E-32 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 SUPERFAMILY SSF89550 127 276 1.63E-28 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 SUPERFAMILY SSF89550 6 91 1.63E-28 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 PANTHER PTHR32294:SF0 104 1190 0.0 T 19-04-2016 AMED_2153 aefd3f6a89dcc47a6889c55054b88549 1195 PANTHER PTHR32294:SF0 2 86 0.0 T 19-04-2016 AMED_6655 581328c5479a7fb84493c698f6fd7eb9 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 118 2.3E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_6655 581328c5479a7fb84493c698f6fd7eb9 138 Gene3D G3DSA:3.10.180.10 2 122 2.4E-28 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6655 581328c5479a7fb84493c698f6fd7eb9 138 SUPERFAMILY SSF54593 10 120 1.14E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3085 131e02b71c0948aba855cf23e47b226e 280 PANTHER PTHR21240:SF1 4 278 2.5E-67 T 19-04-2016 AMED_3085 131e02b71c0948aba855cf23e47b226e 280 PANTHER PTHR21240 4 278 2.5E-67 T 19-04-2016 AMED_3085 131e02b71c0948aba855cf23e47b226e 280 SUPERFAMILY SSF51556 6 278 1.33E-63 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3085 131e02b71c0948aba855cf23e47b226e 280 Pfam PF04909 Amidohydrolase 6 278 9.4E-40 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_3085 131e02b71c0948aba855cf23e47b226e 280 Gene3D G3DSA:3.20.20.140 4 278 4.9E-73 T 19-04-2016 AMED_4305 7877747a6f168a6ba9903105c820fc24 298 PANTHER PTHR30468:SF5 1 284 2.4E-104 T 19-04-2016 AMED_4305 7877747a6f168a6ba9903105c820fc24 298 Gene3D G3DSA:3.60.130.10 6 284 8.8E-83 T 19-04-2016 AMED_4305 7877747a6f168a6ba9903105c820fc24 298 PANTHER PTHR30468 1 284 2.4E-104 T 19-04-2016 AMED_4305 7877747a6f168a6ba9903105c820fc24 298 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 8 270 6.5E-59 T 19-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 AMED_4305 7877747a6f168a6ba9903105c820fc24 298 SUPERFAMILY SSF51197 6 285 1.97E-81 T 19-04-2016 AMED_0867 14762f781347bf842d9b0e110254ba18 193 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 87 1.1E-13 T 19-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMED_0867 14762f781347bf842d9b0e110254ba18 193 SUPERFAMILY SSF51735 1 181 1.0E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0867 14762f781347bf842d9b0e110254ba18 193 PANTHER PTHR14239 1 179 1.1E-29 T 19-04-2016 AMED_0867 14762f781347bf842d9b0e110254ba18 193 Gene3D G3DSA:3.40.50.720 1 171 3.4E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2876 458951e3314b08677cbf2f309e3cb961 134 Gene3D G3DSA:2.30.110.10 9 130 1.1E-15 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2876 458951e3314b08677cbf2f309e3cb961 134 SUPERFAMILY SSF50475 5 130 3.55E-17 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2876 458951e3314b08677cbf2f309e3cb961 134 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 87 8.7E-7 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_4663 34885e792f2c286420d69f4141a72a35 192 Pfam PF11290 Protein of unknown function (DUF3090) 6 176 3.2E-69 T 19-04-2016 IPR021441 Protein of unknown function DUF3090 AMED_4663 34885e792f2c286420d69f4141a72a35 192 TIGRFAM TIGR03847 TIGR03847: conserved hypothetical protein 5 180 6.6E-79 T 19-04-2016 IPR021441 Protein of unknown function DUF3090 AMED_7116 0c076bb5f804e63c1de09370812bb281 136 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 19 116 1.6E-8 T 19-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 AMED_7116 0c076bb5f804e63c1de09370812bb281 136 Gene3D G3DSA:3.60.130.10 19 118 1.2E-9 T 19-04-2016 AMED_7116 0c076bb5f804e63c1de09370812bb281 136 SUPERFAMILY SSF51197 18 119 1.24E-11 T 19-04-2016 AMED_6952 b17cc22f064b0d17468c84634f79ad89 281 PANTHER PTHR37981 2 267 3.3E-35 T 19-04-2016 AMED_6952 b17cc22f064b0d17468c84634f79ad89 281 SUPERFAMILY SSF52266 29 279 4.33E-64 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6952 b17cc22f064b0d17468c84634f79ad89 281 PANTHER PTHR37981:SF3 2 267 3.3E-35 T 19-04-2016 AMED_6952 b17cc22f064b0d17468c84634f79ad89 281 Gene3D G3DSA:3.40.50.1110 25 279 2.3E-71 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_6952 b17cc22f064b0d17468c84634f79ad89 281 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 32 270 4.9E-27 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 86 111 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 Pfam PF13378 Enolase C-terminal domain-like 138 370 8.9E-65 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 SUPERFAMILY SSF51604 99 378 4.72E-80 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 197 228 - T 19-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 PANTHER PTHR13794 171 378 1.8E-118 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 PANTHER PTHR13794 16 154 1.8E-118 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 Gene3D G3DSA:3.30.390.10 12 116 2.1E-40 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 SMART SM00922 134 247 9.0E-24 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 111 1.3E-17 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 Gene3D G3DSA:3.20.20.120 117 369 7.9E-88 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 SUPERFAMILY SSF54826 1 116 3.7E-28 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 PANTHER PTHR13794:SF4 171 378 1.8E-118 T 19-04-2016 AMED_3144 7b1c9e33656197da8fb5906963fa6bc4 385 PANTHER PTHR13794:SF4 16 154 1.8E-118 T 19-04-2016 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 SMART SM00862 156 232 4.7E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 SMART SM00448 7 118 3.8E-39 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 PANTHER PTHR26402 7 237 3.3E-86 T 19-04-2016 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 231 1.6E-23 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 Pfam PF00072 Response regulator receiver domain 10 118 7.8E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 Gene3D G3DSA:1.10.10.10 134 234 3.0E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 SUPERFAMILY SSF46894 133 232 3.12E-28 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 PANTHER PTHR26402:SF578 7 237 3.3E-86 T 19-04-2016 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 Gene3D G3DSA:3.40.50.2300 4 126 1.4E-37 T 19-04-2016 AMED_1738 e7b7f186df5c1f1c8fdfe2575c704061 237 SUPERFAMILY SSF52172 4 132 5.69E-38 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5979 8717c7297ab8b93c783538c14d29f03f 69 SUPERFAMILY SSF46689 32 66 4.48E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5979 8717c7297ab8b93c783538c14d29f03f 69 Gene3D G3DSA:1.10.10.60 33 62 1.8E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5979 8717c7297ab8b93c783538c14d29f03f 69 Pfam PF13384 Homeodomain-like domain 36 62 1.3E-6 T 19-04-2016 AMED_1307 f667d0303023d178ac858c8b2b7968f2 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 315 5.0E-43 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_1307 f667d0303023d178ac858c8b2b7968f2 327 PANTHER PTHR32196 19 327 5.0E-69 T 19-04-2016 AMED_1307 f667d0303023d178ac858c8b2b7968f2 327 PANTHER PTHR32196:SF21 19 327 5.0E-69 T 19-04-2016 AMED_6909 b3fbd749c290a56ec74739f60c8014e8 307 PANTHER PTHR23024 80 305 2.0E-53 T 19-04-2016 AMED_6909 b3fbd749c290a56ec74739f60c8014e8 307 SUPERFAMILY SSF53474 58 305 4.3E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6909 b3fbd749c290a56ec74739f60c8014e8 307 PANTHER PTHR23024:SF144 80 305 2.0E-53 T 19-04-2016 AMED_6909 b3fbd749c290a56ec74739f60c8014e8 307 Gene3D G3DSA:3.40.50.1820 3 306 9.6E-69 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6909 b3fbd749c290a56ec74739f60c8014e8 307 Pfam PF07859 alpha/beta hydrolase fold 79 280 7.9E-46 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 Gene3D G3DSA:3.40.50.1860 1 165 6.3E-48 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 TIGRFAM TIGR00067 glut_race: glutamate racemase 1 245 1.2E-65 T 19-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 172 182 - T 19-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 PANTHER PTHR21198:SF2 1 256 1.1E-93 T 19-04-2016 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 63 71 - T 19-04-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 Pfam PF01177 Asp/Glu/Hydantoin racemase 1 207 5.7E-31 T 19-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 PANTHER PTHR21198 1 256 1.1E-93 T 19-04-2016 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 SUPERFAMILY SSF53681 1 100 1.41E-30 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 Hamap MF_00258 Glutamate racemase [murI]. 1 248 33.479 T 19-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7706 9630c54ab1eeca05bf37bebf09c686e2 257 SUPERFAMILY SSF53681 102 249 3.66E-38 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_7466 d43ffea625dd126c9415d28190a38c3b 179 Gene3D G3DSA:3.40.50.300 2 177 5.2E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7466 d43ffea625dd126c9415d28190a38c3b 179 PANTHER PTHR11711:SF117 1 166 1.2E-53 T 19-04-2016 AMED_7466 d43ffea625dd126c9415d28190a38c3b 179 PANTHER PTHR11711 1 166 1.2E-53 T 19-04-2016 AMED_7466 d43ffea625dd126c9415d28190a38c3b 179 SUPERFAMILY SSF52540 1 168 7.65E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7466 d43ffea625dd126c9415d28190a38c3b 179 Pfam PF03029 Conserved hypothetical ATP binding protein 1 169 4.0E-24 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_2395 6356bf55b9c3a9909d81fc8a17d7ed6e 446 Gene3D G3DSA:1.25.40.10 138 369 3.4E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2395 6356bf55b9c3a9909d81fc8a17d7ed6e 446 SUPERFAMILY SSF48452 227 343 7.59E-5 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7417 3a795fc97000f6b4d074115c63d9c598 276 SUPERFAMILY SSF161098 3 276 8.69E-74 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7417 3a795fc97000f6b4d074115c63d9c598 276 PANTHER PTHR32243:SF8 8 276 1.8E-118 T 19-04-2016 AMED_7417 3a795fc97000f6b4d074115c63d9c598 276 PANTHER PTHR32243 8 276 1.8E-118 T 19-04-2016 AMED_7417 3a795fc97000f6b4d074115c63d9c598 276 Gene3D G3DSA:1.10.3720.10 3 263 4.0E-64 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7417 3a795fc97000f6b4d074115c63d9c598 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 268 1.3E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1980 b5040a544dd1e6a2a3d728dadff729d0 206 PANTHER PTHR33169:SF11 43 187 1.7E-30 T 19-04-2016 AMED_1980 b5040a544dd1e6a2a3d728dadff729d0 206 Pfam PF03551 Transcriptional regulator PadR-like family 60 128 7.6E-21 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_1980 b5040a544dd1e6a2a3d728dadff729d0 206 SUPERFAMILY SSF46785 56 183 5.01E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1980 b5040a544dd1e6a2a3d728dadff729d0 206 PANTHER PTHR33169 43 187 1.7E-30 T 19-04-2016 AMED_1980 b5040a544dd1e6a2a3d728dadff729d0 206 Gene3D G3DSA:1.10.10.10 48 133 1.9E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 SUPERFAMILY SSF46785 10 94 2.5E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 PANTHER PTHR33154:SF2 1 99 1.5E-28 T 19-04-2016 AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 Pfam PF12840 Helix-turn-helix domain 15 73 6.3E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 SMART SM00418 15 95 9.0E-5 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 5.0E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 5.0E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 5.0E-8 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 PANTHER PTHR33154 1 99 1.5E-28 T 19-04-2016 AMED_5613 d2fe6310b3b5178b703ea70a438ebda1 102 Gene3D G3DSA:1.10.10.10 12 93 2.3E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4729 cf73657992f0ff041191df7dcddfe817 185 Gene3D G3DSA:3.90.79.10 3 179 3.0E-54 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_4729 cf73657992f0ff041191df7dcddfe817 185 Pfam PF00293 NUDIX domain 36 146 1.8E-11 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_4729 cf73657992f0ff041191df7dcddfe817 185 SUPERFAMILY SSF55811 3 180 2.03E-47 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_4729 cf73657992f0ff041191df7dcddfe817 185 PANTHER PTHR11839 7 180 6.8E-38 T 19-04-2016 AMED_4729 cf73657992f0ff041191df7dcddfe817 185 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 10 176 4.7E-43 T 19-04-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 AMED_7342 ea8dfbb22cfa94e429bd2d69fe8fb083 309 TIGRFAM TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family 11 230 8.5E-84 T 19-04-2016 IPR019952 F420-dependent oxidoreductase-predicted, Rv1855c AMED_7342 ea8dfbb22cfa94e429bd2d69fe8fb083 309 Pfam PF00296 Luciferase-like monooxygenase 15 248 7.3E-56 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7342 ea8dfbb22cfa94e429bd2d69fe8fb083 309 Gene3D G3DSA:3.20.20.30 16 306 4.6E-82 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7342 ea8dfbb22cfa94e429bd2d69fe8fb083 309 PANTHER PTHR30011 21 296 2.8E-63 T 19-04-2016 AMED_7342 ea8dfbb22cfa94e429bd2d69fe8fb083 309 SUPERFAMILY SSF51679 15 306 2.88E-75 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2240 c0d893ae84db77a51d71d337875b4abc 359 Gene3D G3DSA:1.10.287.1060 29 118 6.2E-4 T 19-04-2016 AMED_2240 c0d893ae84db77a51d71d337875b4abc 359 SUPERFAMILY SSF140453 30 114 2.22E-6 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_8463 2c57934ac255a0f9da51ec547a9a37f7 401 PANTHER PTHR30572 16 400 3.7E-48 T 19-04-2016 AMED_8463 2c57934ac255a0f9da51ec547a9a37f7 401 Pfam PF02687 FtsX-like permease family 284 394 4.4E-20 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_8463 2c57934ac255a0f9da51ec547a9a37f7 401 Pfam PF12704 MacB-like periplasmic core domain 33 236 9.7E-14 T 19-04-2016 IPR025857 MacB-like periplasmic core domain AMED_1976 878b88cbda672f6e32b686e2b060ab1f 187 Pfam PF01765 Ribosome recycling factor 23 185 2.1E-62 T 19-04-2016 IPR023584 Ribosome recycling factor domain AMED_1976 878b88cbda672f6e32b686e2b060ab1f 187 PANTHER PTHR20982 3 187 4.1E-77 T 19-04-2016 IPR002661 Ribosome recycling factor GO:0006412 AMED_1976 878b88cbda672f6e32b686e2b060ab1f 187 SUPERFAMILY SSF55194 5 186 3.92E-70 T 19-04-2016 IPR023584 Ribosome recycling factor domain AMED_1976 878b88cbda672f6e32b686e2b060ab1f 187 Gene3D G3DSA:1.10.132.20 68 187 2.3E-42 T 19-04-2016 IPR023584 Ribosome recycling factor domain AMED_1976 878b88cbda672f6e32b686e2b060ab1f 187 Hamap MF_00040 Ribosome-recycling factor [frr]. 5 187 27.108 T 19-04-2016 IPR002661 Ribosome recycling factor GO:0006412 AMED_1976 878b88cbda672f6e32b686e2b060ab1f 187 TIGRFAM TIGR00496 frr: ribosome recycling factor 12 187 1.4E-65 T 19-04-2016 IPR002661 Ribosome recycling factor GO:0006412 AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 Gene3D G3DSA:1.20.1560.10 20 330 1.1E-60 T 19-04-2016 AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 Gene3D G3DSA:3.40.50.300 347 573 3.9E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 SUPERFAMILY SSF52540 335 577 1.07E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 SUPERFAMILY SSF90123 20 332 8.76E-60 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 PANTHER PTHR24221:SF221 49 581 2.4E-141 T 19-04-2016 AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 PANTHER PTHR24221 49 581 2.4E-141 T 19-04-2016 AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 Pfam PF00664 ABC transporter transmembrane region 33 299 5.2E-34 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 SMART SM00382 368 554 2.3E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5030 ebd40ce5ac84647fb49417e5b36dc181 583 Pfam PF00005 ABC transporter 359 508 2.3E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PANTHER PTHR33164 7 157 1.0E-24 T 19-04-2016 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 1.2E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 1.2E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 1.2E-5 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 SUPERFAMILY SSF46785 7 150 5.13E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 Gene3D G3DSA:1.10.10.10 6 151 3.6E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 PANTHER PTHR33164:SF1 7 157 1.0E-24 T 19-04-2016 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 Pfam PF12802 MarR family 38 98 1.3E-13 T 19-04-2016 AMED_4339 c72cfd0fbfdc2170b427fa61dfbdaf7f 158 SMART SM00347 32 135 6.1E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7282 95f51408790c128d272c4d381f7f797e 290 SUPERFAMILY SSF53335 134 258 3.61E-11 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7282 95f51408790c128d272c4d381f7f797e 290 Pfam PF02384 N-6 DNA Methylase 158 259 5.3E-7 T 19-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMED_7282 95f51408790c128d272c4d381f7f797e 290 Gene3D G3DSA:3.40.50.150 159 263 5.5E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 Pfam PF00797 N-acetyltransferase 22 250 9.7E-61 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 PANTHER PTHR11786 2 271 4.3E-58 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 PRINTS PR01543 Arylamine N-acetyltransferase signature 46 69 1.2E-18 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 PRINTS PR01543 Arylamine N-acetyltransferase signature 22 45 1.2E-18 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 PRINTS PR01543 Arylamine N-acetyltransferase signature 70 92 1.2E-18 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 PRINTS PR01543 Arylamine N-acetyltransferase signature 102 127 1.2E-18 T 19-04-2016 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: REACT_13433 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 Gene3D G3DSA:3.30.2140.10 2 86 4.4E-54 T 19-04-2016 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 Gene3D G3DSA:3.30.2140.10 179 251 4.4E-54 T 19-04-2016 AMED_8478 cb0f62843f02ac974a9bf650472cea2b 273 SUPERFAMILY SSF54001 2 255 1.14E-67 T 19-04-2016 AMED_3243 708ee7a1b420a4247417a81c9c9ca896 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 293 2.6E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3243 708ee7a1b420a4247417a81c9c9ca896 301 Gene3D G3DSA:1.10.3720.10 2 286 5.0E-60 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3243 708ee7a1b420a4247417a81c9c9ca896 301 PANTHER PTHR30193 2 301 8.0E-104 T 19-04-2016 AMED_3243 708ee7a1b420a4247417a81c9c9ca896 301 SUPERFAMILY SSF160964 10 70 8.5E-7 T 19-04-2016 AMED_3243 708ee7a1b420a4247417a81c9c9ca896 301 PANTHER PTHR30193:SF1 2 301 8.0E-104 T 19-04-2016 AMED_3243 708ee7a1b420a4247417a81c9c9ca896 301 SUPERFAMILY SSF161098 52 285 9.94E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4953 c1be1663753ac085daef4822fbcf94a7 237 SUPERFAMILY SSF53335 18 234 6.03E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4953 c1be1663753ac085daef4822fbcf94a7 237 PANTHER PTHR10108:SF705 23 226 8.0E-13 T 19-04-2016 AMED_4953 c1be1663753ac085daef4822fbcf94a7 237 Gene3D G3DSA:3.40.50.150 12 233 4.2E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4953 c1be1663753ac085daef4822fbcf94a7 237 Pfam PF13649 Methyltransferase domain 39 129 4.4E-10 T 19-04-2016 AMED_4953 c1be1663753ac085daef4822fbcf94a7 237 PANTHER PTHR10108 23 226 8.0E-13 T 19-04-2016 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 2.3E-57 T 19-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 Gene3D G3DSA:3.40.192.10 7 138 1.5E-41 T 19-04-2016 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 2.4E-59 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 205 234 2.4E-59 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 2.4E-59 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 2.4E-59 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 2.4E-59 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 2.4E-59 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 3.5E-35 T 19-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 SUPERFAMILY SSF51735 123 280 1.31E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 SUPERFAMILY SSF53223 2 121 7.1E-37 T 19-04-2016 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 35.168 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 PANTHER PTHR10025 2 280 1.4E-127 T 19-04-2016 AMED_0819 b95f5aa8ccb220e7e7845141c53394a7 284 Gene3D G3DSA:3.40.50.720 139 263 1.1E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5219 0424bb32a56a9c19600186b4b9e2fef8 137 PANTHER PTHR41553 12 136 3.0E-19 T 19-04-2016 AMED_5219 0424bb32a56a9c19600186b4b9e2fef8 137 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 16 132 6.5E-32 T 19-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AMED_5219 0424bb32a56a9c19600186b4b9e2fef8 137 PANTHER PTHR41553:SF1 12 136 3.0E-19 T 19-04-2016 AMED_4866 fb4fa136e7fa43094e8a14a9e55b94d3 111 Gene3D G3DSA:3.40.250.10 3 107 1.2E-20 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_4866 fb4fa136e7fa43094e8a14a9e55b94d3 111 Pfam PF00581 Rhodanese-like domain 9 100 3.3E-11 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_4866 fb4fa136e7fa43094e8a14a9e55b94d3 111 SUPERFAMILY SSF52821 3 109 7.73E-24 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_4866 fb4fa136e7fa43094e8a14a9e55b94d3 111 SMART SM00450 5 104 2.3E-7 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_4866 fb4fa136e7fa43094e8a14a9e55b94d3 111 ProSitePatterns PS00380 Rhodanese signature 1. 30 41 - T 19-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 SUPERFAMILY SSF51004 37 325 6.8E-63 T 19-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 Gene3D G3DSA:2.130.10.10 127 330 5.7E-46 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 Gene3D G3DSA:2.130.10.10 43 126 6.1E-20 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 Pfam PF10282 Lactonase, 7-bladed beta-propeller 119 272 9.5E-7 T 19-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 PANTHER PTHR13833 42 248 1.4E-36 T 19-04-2016 AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 PANTHER PTHR13833 287 329 1.4E-36 T 19-04-2016 AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 289 330 2.8E-14 T 19-04-2016 IPR011964 YVTN beta-propeller repeat AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 126 160 2.0E-12 T 19-04-2016 IPR011964 YVTN beta-propeller repeat AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 167 207 1.5E-13 T 19-04-2016 IPR011964 YVTN beta-propeller repeat AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 47 81 3.1E-8 T 19-04-2016 IPR011964 YVTN beta-propeller repeat AMED_4816 e7538c430fe5da2f92b779cdf6208875 331 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 85 125 6.8E-17 T 19-04-2016 IPR011964 YVTN beta-propeller repeat AMED_3035 ab22039a9053ab6bce7a22fb2714246e 135 PANTHER PTHR33990 2 133 2.9E-45 T 19-04-2016 AMED_3035 ab22039a9053ab6bce7a22fb2714246e 135 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 130 3.2E-12 T 19-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase AMED_3035 ab22039a9053ab6bce7a22fb2714246e 135 SUPERFAMILY SSF54593 4 131 6.7E-34 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3035 ab22039a9053ab6bce7a22fb2714246e 135 PANTHER PTHR33990:SF1 2 133 2.9E-45 T 19-04-2016 AMED_3035 ab22039a9053ab6bce7a22fb2714246e 135 Gene3D G3DSA:3.10.180.10 9 132 1.8E-43 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1101 2a5e7c6d78e473b4dc585d426eb7aee8 186 Pfam PF03703 Bacterial PH domain 79 155 4.7E-13 T 19-04-2016 IPR005182 Domain of unknown function DUF304 AMED_1101 2a5e7c6d78e473b4dc585d426eb7aee8 186 PANTHER PTHR37938 1 160 4.1E-16 T 19-04-2016 AMED_4649 605f56ef6b35e6981e7cea685eca95a7 214 SUPERFAMILY SSF53335 24 208 1.12E-29 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4649 605f56ef6b35e6981e7cea685eca95a7 214 Pfam PF13649 Methyltransferase domain 67 157 3.6E-9 T 19-04-2016 AMED_4649 605f56ef6b35e6981e7cea685eca95a7 214 Gene3D G3DSA:3.40.50.150 40 201 2.6E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 PANTHER PTHR11675 308 425 2.6E-20 T 19-04-2016 AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 SUPERFAMILY SSF50370 302 425 1.1E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 Gene3D G3DSA:2.80.10.50 297 425 1.7E-39 T 19-04-2016 AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 SUPERFAMILY SSF53474 46 269 2.37E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 Gene3D G3DSA:3.40.50.1820 41 272 3.8E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 SMART SM00458 300 427 5.5E-33 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 PANTHER PTHR11675:SF55 308 425 2.6E-20 T 19-04-2016 AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 Pfam PF01738 Dienelactone hydrolase family 132 245 8.7E-9 T 19-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 AMED_3680 97f9ea451088cceac0a1fbcbe9001934 428 Pfam PF00652 Ricin-type beta-trefoil lectin domain 303 424 3.4E-30 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3518 4e455bb380001df2edb7881e4c936df2 396 PANTHER PTHR32468 9 380 9.9E-61 T 19-04-2016 AMED_3518 4e455bb380001df2edb7881e4c936df2 396 Pfam PF00999 Sodium/hydrogen exchanger family 12 382 1.8E-52 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_3518 4e455bb380001df2edb7881e4c936df2 396 PANTHER PTHR32468:SF9 9 380 9.9E-61 T 19-04-2016 AMED_2228 387fcb1975823d2c731a3b52321582d8 423 Gene3D G3DSA:3.40.50.1820 205 319 4.4E-4 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2228 387fcb1975823d2c731a3b52321582d8 423 Pfam PF06259 Alpha/beta hydrolase 182 350 2.6E-14 T 19-04-2016 IPR010427 Protein of unknown function DUF1023 AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 1090 1112 1300.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 1123 1153 970.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 965 987 1800.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 1020 1043 2000.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SMART SM00710 941 963 11.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF49785 271 409 1.49E-16 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Pfam PF07705 CARDB 413 513 8.7E-24 T 19-04-2016 IPR011635 CARDB domain AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Pfam PF07705 CARDB 526 630 3.3E-5 T 19-04-2016 IPR011635 CARDB domain AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.120.260 267 414 4.3E-23 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.120.260 41 178 2.6E-30 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF49265 180 265 6.79E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Pfam PF00754 F5/8 type C domain 280 404 1.2E-6 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Pfam PF00754 F5/8 type C domain 49 169 2.0E-17 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SMART SM00231 28 174 1.3E-5 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF51126 821 1137 2.16E-27 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4615 084720463766baa59e0a8410ccdf3499 1194 Gene3D G3DSA:2.60.40.10 180 265 2.2E-15 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_4615 084720463766baa59e0a8410ccdf3499 1194 SUPERFAMILY SSF49785 45 174 9.22E-25 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6648 0898758b55d01511e3e4164fc3ea7a6a 409 Pfam PF00144 Beta-lactamase 23 402 1.0E-67 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_6648 0898758b55d01511e3e4164fc3ea7a6a 409 SUPERFAMILY SSF56601 17 406 1.76E-95 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6648 0898758b55d01511e3e4164fc3ea7a6a 409 PANTHER PTHR22935:SF77 5 407 3.3E-106 T 19-04-2016 AMED_6648 0898758b55d01511e3e4164fc3ea7a6a 409 Gene3D G3DSA:3.40.710.10 10 405 8.4E-86 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6648 0898758b55d01511e3e4164fc3ea7a6a 409 PANTHER PTHR22935 5 407 3.3E-106 T 19-04-2016 AMED_8137 9111cdc19c7204007b3cf29e302b1fd3 382 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 347 379 1.6E-4 T 19-04-2016 IPR019931 LPXTG cell wall anchor domain AMED_8137 9111cdc19c7204007b3cf29e302b1fd3 382 TIGRFAM TIGR03934 TQXA_dom: TQXA domain 110 163 3.6E-13 T 19-04-2016 IPR023849 Uncharacterised domain CHP03934, TQXA AMED_0138 a80173c101311641995b78b58632b926 345 Pfam PF14219 Domain of unknown function (DUF4328) 151 308 4.2E-33 T 19-04-2016 IPR025565 Domain of unknown function DUF4328 AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.7E-21 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.1E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 SUPERFAMILY SSF51735 3 220 4.03E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5114 283f7f69d4ed413bf507a0b749824315 257 Gene3D G3DSA:3.40.50.720 2 201 1.8E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5114 283f7f69d4ed413bf507a0b749824315 257 Pfam PF00106 short chain dehydrogenase 4 193 4.4E-35 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PANTHER PTHR24322:SF468 153 184 1.5E-38 T 19-04-2016 AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PANTHER PTHR24322:SF468 7 131 1.5E-38 T 19-04-2016 AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PIRSF PIRSF000126 1 246 2.8E-56 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PANTHER PTHR24322 153 184 1.5E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5114 283f7f69d4ed413bf507a0b749824315 257 PANTHER PTHR24322 7 131 1.5E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5955 61e7a46c88d828f66b8e69451af15f1d 254 Gene3D G3DSA:1.10.260.40 2 41 3.8E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5955 61e7a46c88d828f66b8e69451af15f1d 254 SUPERFAMILY SSF47413 2 42 5.63E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5955 61e7a46c88d828f66b8e69451af15f1d 254 Pfam PF01381 Helix-turn-helix 2 37 5.0E-6 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5955 61e7a46c88d828f66b8e69451af15f1d 254 PANTHER PTHR10245 2 251 3.3E-38 T 19-04-2016 AMED_5955 61e7a46c88d828f66b8e69451af15f1d 254 PANTHER PTHR10245:SF7 2 251 3.3E-38 T 19-04-2016 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 299 310 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_9173 5206771b37f931bfdb0a1010beae8182 737 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 390 401 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_9173 5206771b37f931bfdb0a1010beae8182 737 Pfam PF02754 Cysteine-rich domain 602 688 8.4E-18 T 19-04-2016 IPR004017 Cysteine-rich domain AMED_9173 5206771b37f931bfdb0a1010beae8182 737 Pfam PF02754 Cysteine-rich domain 472 563 3.5E-15 T 19-04-2016 IPR004017 Cysteine-rich domain AMED_9173 5206771b37f931bfdb0a1010beae8182 737 PANTHER PTHR11921:SF22 361 720 6.8E-200 T 19-04-2016 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 PANTHER PTHR11921:SF22 103 335 6.8E-200 T 19-04-2016 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 SUPERFAMILY SSF46548 358 418 5.06E-22 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 SUPERFAMILY SSF46548 282 320 5.06E-22 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 Gene3D G3DSA:1.10.1060.10 271 331 3.1E-31 T 19-04-2016 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 Gene3D G3DSA:1.10.1060.10 369 419 3.1E-31 T 19-04-2016 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 Pfam PF13237 4Fe-4S dicluster domain 294 401 3.4E-13 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_9173 5206771b37f931bfdb0a1010beae8182 737 PANTHER PTHR11921 361 720 6.8E-200 T 19-04-2016 AMED_9173 5206771b37f931bfdb0a1010beae8182 737 PANTHER PTHR11921 103 335 6.8E-200 T 19-04-2016 AMED_3567 b69df58c3cd776cea71fb375f512d9c5 284 SMART SM00530 9 81 2.5E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3567 b69df58c3cd776cea71fb375f512d9c5 284 Pfam PF13560 Helix-turn-helix domain 5 84 2.1E-15 T 19-04-2016 AMED_3567 b69df58c3cd776cea71fb375f512d9c5 284 PANTHER PTHR35010:SF1 1 284 6.1E-142 T 19-04-2016 AMED_3567 b69df58c3cd776cea71fb375f512d9c5 284 Gene3D G3DSA:1.10.260.40 3 80 7.3E-16 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3567 b69df58c3cd776cea71fb375f512d9c5 284 SUPERFAMILY SSF47413 28 80 1.29E-6 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3567 b69df58c3cd776cea71fb375f512d9c5 284 PANTHER PTHR35010 1 284 6.1E-142 T 19-04-2016 AMED_5057 7a0dc00dd441a9717728627f26a17819 235 SUPERFAMILY SSF56349 86 215 1.59E-18 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_5057 7a0dc00dd441a9717728627f26a17819 235 Pfam PF00589 Phage integrase family 24 212 7.7E-15 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_5057 7a0dc00dd441a9717728627f26a17819 235 Pfam PF01695 IstB-like ATP binding protein 13 41 2.1E-5 T 19-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 AMED_5057 7a0dc00dd441a9717728627f26a17819 235 Gene3D G3DSA:1.10.443.10 24 211 3.7E-19 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_1845 f87f698e514521ef876b68cd205c6b7b 117 PANTHER PTHR34187 12 116 6.3E-24 T 19-04-2016 AMED_1845 f87f698e514521ef876b68cd205c6b7b 117 Pfam PF02656 Domain of unknown function (DUF202) 18 81 1.9E-15 T 19-04-2016 IPR003807 Domain of unknown function DUF202 AMED_8781 1d9ea7d9c86c2b9d9e8f9e6f6f83977c 79 SUPERFAMILY SSF57938 17 50 9.42E-5 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMED_6121 149a8bcff1beabc74be0ece16cf7dc38 172 PIRSF PIRSF012622 1 171 1.2E-59 T 19-04-2016 IPR014465 Uncharacterised conserved protein UCP012622 AMED_6121 149a8bcff1beabc74be0ece16cf7dc38 172 Gene3D G3DSA:2.40.380.10 1 164 1.0E-66 T 19-04-2016 IPR007295 Domain of unknown function DUF402 AMED_6121 149a8bcff1beabc74be0ece16cf7dc38 172 SUPERFAMILY SSF159234 4 169 5.23E-49 T 19-04-2016 AMED_6121 149a8bcff1beabc74be0ece16cf7dc38 172 Pfam PF04167 Protein of unknown function (DUF402) 53 120 5.5E-13 T 19-04-2016 IPR007295 Domain of unknown function DUF402 AMED_4845 67e8019e04b8bd6a986dfaa2b8c78c3c 661 PANTHER PTHR23073:SF24 443 660 4.6E-38 T 19-04-2016 AMED_4845 67e8019e04b8bd6a986dfaa2b8c78c3c 661 PANTHER PTHR23073 443 660 4.6E-38 T 19-04-2016 AMED_4845 67e8019e04b8bd6a986dfaa2b8c78c3c 661 SMART SM00382 438 570 9.0E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4845 67e8019e04b8bd6a986dfaa2b8c78c3c 661 SUPERFAMILY SSF52540 397 605 6.46E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4845 67e8019e04b8bd6a986dfaa2b8c78c3c 661 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 443 567 4.7E-23 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_4845 67e8019e04b8bd6a986dfaa2b8c78c3c 661 Gene3D G3DSA:3.40.50.300 441 583 1.6E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1524 8085338e79b7639107c6bffcdcaf4a41 121 Pfam PF14342 Domain of unknown function (DUF4396) 3 110 3.5E-27 T 19-04-2016 IPR025509 Domain of unknown function DUF4396 AMED_4528 281abdf39c272d4eb3a9f9c5d30a1717 365 PANTHER PTHR37958:SF1 1 365 1.1E-107 T 19-04-2016 AMED_4528 281abdf39c272d4eb3a9f9c5d30a1717 365 Pfam PF01699 Sodium/calcium exchanger protein 37 188 1.2E-13 T 19-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 AMED_4528 281abdf39c272d4eb3a9f9c5d30a1717 365 Pfam PF01699 Sodium/calcium exchanger protein 222 363 5.0E-12 T 19-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 AMED_4528 281abdf39c272d4eb3a9f9c5d30a1717 365 PANTHER PTHR37958 1 365 1.1E-107 T 19-04-2016 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 SUPERFAMILY SSF88659 107 183 5.79E-10 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 PANTHER PTHR30173 1 182 9.7E-31 T 19-04-2016 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 PANTHER PTHR30173:SF6 1 182 9.7E-31 T 19-04-2016 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 Gene3D G3DSA:1.10.10.10 120 182 2.0E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 Gene3D G3DSA:1.10.1740.10 11 119 4.2E-17 T 19-04-2016 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 SUPERFAMILY SSF88946 9 114 1.07E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 Pfam PF04542 Sigma-70 region 2 30 87 3.7E-7 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8654 33d8e573d4827181bbc0579dc07fa574 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 182 2.6E-20 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 SUPERFAMILY SSF51905 311 400 1.84E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 SUPERFAMILY SSF51905 4 180 1.84E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 Pfam PF01494 FAD binding domain 4 180 8.3E-12 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 Pfam PF01494 FAD binding domain 326 390 7.5E-10 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 Gene3D G3DSA:3.50.50.60 315 394 1.9E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 Gene3D G3DSA:3.50.50.60 4 69 1.9E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 Gene3D G3DSA:3.50.50.60 109 187 1.9E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 355 1.4E-14 T 19-04-2016 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.4E-14 T 19-04-2016 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 324 339 1.4E-14 T 19-04-2016 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 PANTHER PTHR13789:SF243 3 406 1.3E-55 T 19-04-2016 AMED_2916 f4a1737fea8d4a6a45e489098025986e 406 PANTHER PTHR13789 3 406 1.3E-55 T 19-04-2016 AMED_2802 a919293af597538d66a7366b3562dc03 103 Pfam PF13397 RNA polymerase-binding protein 1 97 3.7E-38 T 19-04-2016 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 AMED_2802 a919293af597538d66a7366b3562dc03 103 ProSitePatterns PS00202 Rubredoxin signature. 40 50 - T 19-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 AMED_2802 a919293af597538d66a7366b3562dc03 103 Hamap MF_01483 RNA polymerase-binding protein RbpA [rbpA]. 1 100 23.372 T 19-04-2016 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 TIGRFAM TIGR02133 RPI_actino: ribose 5-phosphate isomerase 2 130 1.3E-52 T 19-04-2016 IPR011860 Ribose 5-phosphate isomerase GO:0004751 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 2 129 5.9E-43 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 SUPERFAMILY SSF89623 2 133 1.31E-41 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 Pfam PF02502 Ribose/Galactose Isomerase 2 124 2.4E-37 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 PANTHER PTHR30345 1 139 3.8E-46 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 Gene3D G3DSA:3.40.1400.10 2 131 1.8E-43 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMED_6811 a386b2b3c2b9d5183b2d6b2bb68721e4 139 PIRSF PIRSF005384 1 131 1.8E-36 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMED_0972 3b4d8586b47a5a2a3d1dc0d62be2768e 342 Pfam PF00877 NlpC/P60 family 232 330 3.4E-22 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_0972 3b4d8586b47a5a2a3d1dc0d62be2768e 342 Gene3D G3DSA:3.90.1720.10 214 341 4.4E-35 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_0972 3b4d8586b47a5a2a3d1dc0d62be2768e 342 PANTHER PTHR21666 223 340 3.2E-26 T 19-04-2016 AMED_0972 3b4d8586b47a5a2a3d1dc0d62be2768e 342 PANTHER PTHR21666 169 191 3.2E-26 T 19-04-2016 AMED_0972 3b4d8586b47a5a2a3d1dc0d62be2768e 342 SUPERFAMILY SSF54001 222 330 1.47E-31 T 19-04-2016 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 Gene3D G3DSA:3.40.50.720 1 151 4.8E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 Gene3D G3DSA:1.10.1040.10 167 277 1.6E-7 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 1 149 1.0E-17 T 19-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 PANTHER PTHR22981 1 278 1.4E-41 T 19-04-2016 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 PIRSF PIRSF000103 1 278 6.7E-34 T 19-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 SUPERFAMILY SSF48179 154 276 4.87E-6 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 PANTHER PTHR22981:SF76 1 278 1.4E-41 T 19-04-2016 AMED_0956 8fa12e78ee7ea6778939ca45410ec2cb 278 SUPERFAMILY SSF51735 1 149 8.1E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 PANTHER PTHR23513 1 405 1.3E-47 T 19-04-2016 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 21 43 1.8E-6 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 146 167 1.8E-6 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 220 242 1.8E-6 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 PRINTS PR01988 Putative bacilysin exporter bacE signature 173 190 1.8E-6 T 19-04-2016 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 Gene3D G3DSA:1.20.1250.20 42 203 2.8E-8 T 19-04-2016 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 Gene3D G3DSA:1.20.1250.20 229 402 1.0E-14 T 19-04-2016 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 Pfam PF07690 Major Facilitator Superfamily 22 236 7.3E-10 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 Pfam PF07690 Major Facilitator Superfamily 248 406 9.1E-13 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9104 c6a41a4c6e31e904a296eac7caa14ba4 420 SUPERFAMILY SSF103473 19 402 1.31E-35 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5557 37b0fc549a4f5165706ce3058a1a40d5 464 Gene3D G3DSA:1.20.1250.20 268 453 4.2E-21 T 19-04-2016 AMED_5557 37b0fc549a4f5165706ce3058a1a40d5 464 Gene3D G3DSA:1.20.1250.20 29 216 6.6E-26 T 19-04-2016 AMED_5557 37b0fc549a4f5165706ce3058a1a40d5 464 SUPERFAMILY SSF103473 18 457 4.45E-77 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5557 37b0fc549a4f5165706ce3058a1a40d5 464 PANTHER PTHR24064:SF277 1 458 1.9E-80 T 19-04-2016 AMED_5557 37b0fc549a4f5165706ce3058a1a40d5 464 PANTHER PTHR24064 1 458 1.9E-80 T 19-04-2016 AMED_5557 37b0fc549a4f5165706ce3058a1a40d5 464 Pfam PF00083 Sugar (and other) transporter 70 456 4.8E-42 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_7854 8bd8129b81e00940d8a597e4e75cbe12 328 Gene3D G3DSA:1.10.10.10 264 320 4.0E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7854 8bd8129b81e00940d8a597e4e75cbe12 328 SMART SM00418 258 324 5.4E-4 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7854 8bd8129b81e00940d8a597e4e75cbe12 328 SMART SM00419 264 313 7.5E-6 T 19-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMED_7854 8bd8129b81e00940d8a597e4e75cbe12 328 SUPERFAMILY SSF46785 264 323 2.08E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7854 8bd8129b81e00940d8a597e4e75cbe12 328 Pfam PF12840 Helix-turn-helix domain 260 308 4.6E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 PRINTS PR00625 DnaJ domain signature 25 40 1.6E-6 T 19-04-2016 IPR001623 DnaJ domain AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 PRINTS PR00625 DnaJ domain signature 7 25 1.6E-6 T 19-04-2016 IPR001623 DnaJ domain AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 Pfam PF00226 DnaJ domain 5 63 9.3E-17 T 19-04-2016 IPR001623 DnaJ domain AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 SMART SM00271 4 58 6.4E-17 T 19-04-2016 IPR001623 DnaJ domain AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 SUPERFAMILY SSF46565 3 84 1.96E-22 T 19-04-2016 IPR001623 DnaJ domain AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 PANTHER PTHR24078 3 66 2.1E-18 T 19-04-2016 AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 ProSitePatterns PS00636 Nt-dnaJ domain signature. 43 62 - T 19-04-2016 IPR018253 DnaJ domain, conserved site AMED_3359 62483b4b98ed49d40ea430b60c6e72ed 363 Gene3D G3DSA:1.10.287.110 4 68 4.0E-20 T 19-04-2016 IPR001623 DnaJ domain AMED_3333 19ecb22c9b22957016a000490bdd83d7 199 Gene3D G3DSA:3.30.530.20 50 198 5.7E-14 T 19-04-2016 IPR023393 START-like domain AMED_3333 19ecb22c9b22957016a000490bdd83d7 199 SUPERFAMILY SSF55961 48 198 1.27E-26 T 19-04-2016 AMED_3333 19ecb22c9b22957016a000490bdd83d7 199 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 51 197 6.9E-17 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_1670 86207235f682abc52941a8c9b37afe0d 164 SUPERFAMILY SSF55729 1 149 1.45E-28 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1670 86207235f682abc52941a8c9b37afe0d 164 Pfam PF00583 Acetyltransferase (GNAT) family 60 142 8.0E-15 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1670 86207235f682abc52941a8c9b37afe0d 164 Gene3D G3DSA:3.40.630.30 1 148 1.5E-31 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1670 86207235f682abc52941a8c9b37afe0d 164 PANTHER PTHR23091 1 147 1.0E-18 T 19-04-2016 AMED_8522 2c2c8983eb93c2b55e643cd8e166f7fa 156 SUPERFAMILY SSF55040 11 153 1.7E-51 T 19-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 AMED_8522 2c2c8983eb93c2b55e643cd8e166f7fa 156 PANTHER PTHR22960 2 156 7.3E-75 T 19-04-2016 AMED_8522 2c2c8983eb93c2b55e643cd8e166f7fa 156 Gene3D G3DSA:3.30.70.640 3 155 1.3E-58 T 19-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 AMED_8522 2c2c8983eb93c2b55e643cd8e166f7fa 156 Pfam PF01967 MoaC family 15 148 3.3E-47 T 19-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 AMED_8522 2c2c8983eb93c2b55e643cd8e166f7fa 156 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 149 7.9E-55 T 19-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 AMED_8522 2c2c8983eb93c2b55e643cd8e166f7fa 156 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 156 33.093 T 19-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 AMED_4155 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 SUPERFAMILY SSF52218 1 96 7.71E-15 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_4155 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 PANTHER PTHR38030 1 168 3.5E-19 T 19-04-2016 AMED_4155 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 Pfam PF12724 Flavodoxin domain 5 124 3.5E-23 T 19-04-2016 IPR026816 Flavodoxin domain AMED_4155 db0e02aaa2a43eabdcd1d3fd4cc33a06 168 Gene3D G3DSA:3.40.50.360 1 162 1.2E-13 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 SMART SM00855 3 161 1.7E-20 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 TIGRFAM TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family 3 205 2.2E-97 T 19-04-2016 IPR022492 Phosphomutase MSMEG4193, putative AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 PANTHER PTHR23029 3 212 9.6E-88 T 19-04-2016 AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 200 8.5E-47 T 19-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 Gene3D G3DSA:3.40.50.1240 3 208 6.7E-42 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 PANTHER PTHR23029:SF25 3 212 9.6E-88 T 19-04-2016 AMED_4637 4ddd09f2e79907996b5109bf9950aaf8 235 SUPERFAMILY SSF53254 3 201 2.14E-41 T 19-04-2016 IPR029033 Histidine phosphatase superfamily AMED_7707 aaab0181a968bcbd30a86f1307e197c2 209 PANTHER PTHR22936 53 198 4.8E-36 T 19-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 AMED_7707 aaab0181a968bcbd30a86f1307e197c2 209 PANTHER PTHR22936:SF11 53 198 4.8E-36 T 19-04-2016 AMED_7707 aaab0181a968bcbd30a86f1307e197c2 209 Pfam PF01694 Rhomboid family 65 198 1.1E-23 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_7707 aaab0181a968bcbd30a86f1307e197c2 209 SUPERFAMILY SSF144091 26 198 4.05E-26 T 19-04-2016 AMED_7707 aaab0181a968bcbd30a86f1307e197c2 209 Gene3D G3DSA:1.20.1540.10 65 196 3.3E-17 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_6552 0e0044f19af7156b1f6d98ea4b35afa2 451 SMART SM00331 229 441 1.5E-10 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_6552 0e0044f19af7156b1f6d98ea4b35afa2 451 PANTHER PTHR21021 214 450 2.5E-20 T 19-04-2016 AMED_6552 0e0044f19af7156b1f6d98ea4b35afa2 451 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 275 440 2.1E-22 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_7678 9c1a135975ba0ff829abbd5fa20dd062 123 Pfam PF05331 Protein of unknown function (DUF742) 12 123 1.5E-32 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_7678 9c1a135975ba0ff829abbd5fa20dd062 123 Gene3D G3DSA:1.10.10.10 52 99 9.7E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7678 9c1a135975ba0ff829abbd5fa20dd062 123 PANTHER PTHR36221 8 123 1.6E-31 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 419 2.9E-69 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 Gene3D G3DSA:1.20.1250.20 21 200 1.5E-20 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 207 225 2.5E-5 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 2.5E-5 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 303 327 2.5E-5 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 2.5E-5 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 SUPERFAMILY SSF103473 249 453 1.44E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 SUPERFAMILY SSF103473 7 199 1.44E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 PANTHER PTHR23501 12 453 2.0E-92 T 19-04-2016 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 Pfam PF07690 Major Facilitator Superfamily 23 410 4.1E-46 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7655 5e8f16f693f8333763285d1fc809f0f1 461 Gene3D G3DSA:1.20.1250.20 266 454 9.8E-19 T 19-04-2016 AMED_8072 fb4962d7b58c4670cdadef919198ee08 84 SUPERFAMILY SSF51338 2 36 2.3E-9 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8072 fb4962d7b58c4670cdadef919198ee08 84 Gene3D G3DSA:2.30.40.10 2 36 5.4E-8 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 Gene3D G3DSA:1.10.540.10 12 109 2.2E-17 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 112 204 1.4E-19 T 19-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 Gene3D G3DSA:1.20.140.10 208 385 7.1E-27 T 19-04-2016 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 27 108 6.6E-10 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 SUPERFAMILY SSF47203 218 377 5.76E-17 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 SUPERFAMILY SSF56645 12 231 2.23E-63 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 Gene3D G3DSA:2.40.110.10 111 207 1.1E-34 T 19-04-2016 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 218 375 9.4E-18 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 PANTHER PTHR10909 19 394 4.8E-147 T 19-04-2016 AMED_3139 63592102abe01d3ca3a307eb0908eb8c 394 PANTHER PTHR10909:SF242 19 394 4.8E-147 T 19-04-2016 AMED_2796 93c962da682b1576923fc8429425dd8e 214 PANTHER PTHR30086 2 213 8.6E-42 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_2796 93c962da682b1576923fc8429425dd8e 214 Pfam PF01810 LysE type translocator 17 209 8.0E-26 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_2796 93c962da682b1576923fc8429425dd8e 214 PANTHER PTHR30086:SF3 2 213 8.6E-42 T 19-04-2016 AMED_2796 93c962da682b1576923fc8429425dd8e 214 PIRSF PIRSF006324 1 212 1.3E-51 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 Gene3D G3DSA:3.30.565.10 334 430 3.6E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 Pfam PF13581 Histidine kinase-like ATPase domain 329 394 6.8E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 SUPERFAMILY SSF55874 335 428 5.76E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 PANTHER PTHR24421 235 428 5.1E-17 T 19-04-2016 AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 PANTHER PTHR24421 119 156 5.1E-17 T 19-04-2016 AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 SMART SM00387 336 430 5.0E-4 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0787 4d5f5fcde9f8c45e93d441baec6a25a9 435 Pfam PF04024 PspC domain 28 82 1.4E-13 T 19-04-2016 IPR007168 Phage shock protein, PspC, N-terminal AMED_2839 56fc3524afc2a10882788ef0bd44ed87 648 PANTHER PTHR10566 104 629 6.0E-125 T 19-04-2016 AMED_2839 56fc3524afc2a10882788ef0bd44ed87 648 PANTHER PTHR10566:SF10 104 629 6.0E-125 T 19-04-2016 AMED_2839 56fc3524afc2a10882788ef0bd44ed87 648 Pfam PF03109 ABC1 family 202 306 2.2E-30 T 19-04-2016 IPR004147 UbiB domain AMED_2839 56fc3524afc2a10882788ef0bd44ed87 648 Gene3D G3DSA:3.90.1200.10 347 399 9.5E-6 T 19-04-2016 AMED_2839 56fc3524afc2a10882788ef0bd44ed87 648 SUPERFAMILY SSF56112 184 260 6.42E-28 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_2839 56fc3524afc2a10882788ef0bd44ed87 648 SUPERFAMILY SSF56112 294 461 6.42E-28 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 SMART SM00644 254 390 7.1E-40 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 PANTHER PTHR30417:SF1 15 621 3.2E-195 T 19-04-2016 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 SUPERFAMILY SSF55846 244 406 1.31E-39 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 Gene3D G3DSA:1.10.530.10 37 98 4.8E-10 T 19-04-2016 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 Gene3D G3DSA:1.10.530.10 139 179 4.8E-10 T 19-04-2016 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 SUPERFAMILY SSF53955 20 83 1.34E-5 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 263 391 1.5E-19 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 PANTHER PTHR30417 15 621 3.2E-195 T 19-04-2016 AMED_0755 fe83436cffdf39e3f6eeb6a7e118f6f2 625 Gene3D G3DSA:3.40.80.10 251 402 1.4E-37 T 19-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 AMED_8643 65ab78573657030425bda318f87bcb19 183 Pfam PF13023 HD domain 13 167 9.7E-26 T 19-04-2016 IPR006674 HD domain AMED_8643 65ab78573657030425bda318f87bcb19 183 SMART SM00471 30 144 2.7E-10 T 19-04-2016 IPR003607 HD/PDEase domain AMED_8643 65ab78573657030425bda318f87bcb19 183 PANTHER PTHR11845 12 170 1.4E-23 T 19-04-2016 AMED_8643 65ab78573657030425bda318f87bcb19 183 SUPERFAMILY SSF109604 7 165 1.34E-33 T 19-04-2016 AMED_8643 65ab78573657030425bda318f87bcb19 183 Gene3D G3DSA:1.10.3210.10 4 175 1.7E-41 T 19-04-2016 IPR006674 HD domain AMED_2213 6aeaec147d83300eb973996a9a294062 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PANTHER PTHR11712 13 402 8.0E-116 T 19-04-2016 AMED_2213 6aeaec147d83300eb973996a9a294062 403 Pfam PF00067 Cytochrome P450 189 374 6.8E-24 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 141 157 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 276 287 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 195 217 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 352 363 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 343 352 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 294 321 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 95 106 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 322 337 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 PRINTS PR00359 B-class P450 signature 158 173 1.2E-60 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_2213 6aeaec147d83300eb973996a9a294062 403 Gene3D G3DSA:1.10.630.10 4 403 9.7E-134 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2213 6aeaec147d83300eb973996a9a294062 403 SUPERFAMILY SSF48264 11 403 7.73E-102 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_2301 aede28c1c6e8e103bdaa728667c09938 480 PIRSF PIRSF006060 1 476 1.9E-59 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2301 aede28c1c6e8e103bdaa728667c09938 480 Pfam PF13520 Amino acid permease 18 455 7.3E-32 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2301 aede28c1c6e8e103bdaa728667c09938 480 PANTHER PTHR11785 11 459 8.1E-47 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_8527 2f60c67dced65a4b8d4888c3a5aa65a3 493 Pfam PF05331 Protein of unknown function (DUF742) 383 493 7.8E-32 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_8527 2f60c67dced65a4b8d4888c3a5aa65a3 493 PANTHER PTHR36221 360 493 3.3E-32 T 19-04-2016 AMED_6128 b15174acc1edf18ac11b00ec6ea55977 283 Pfam PF08241 Methyltransferase domain 86 178 4.1E-19 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_6128 b15174acc1edf18ac11b00ec6ea55977 283 SUPERFAMILY SSF53335 40 264 3.82E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6128 b15174acc1edf18ac11b00ec6ea55977 283 Gene3D G3DSA:3.40.50.150 40 271 4.3E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6128 b15174acc1edf18ac11b00ec6ea55977 283 PANTHER PTHR10108 74 193 2.2E-28 T 19-04-2016 AMED_6128 b15174acc1edf18ac11b00ec6ea55977 283 PANTHER PTHR10108 209 264 2.2E-28 T 19-04-2016 AMED_6213 c30b1bbdda65046d3bfb04b73a2bde01 264 PANTHER PTHR10245 3 257 9.7E-41 T 19-04-2016 AMED_6213 c30b1bbdda65046d3bfb04b73a2bde01 264 PANTHER PTHR10245:SF17 3 257 9.7E-41 T 19-04-2016 AMED_6213 c30b1bbdda65046d3bfb04b73a2bde01 264 Gene3D G3DSA:1.10.260.40 3 61 3.4E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6213 c30b1bbdda65046d3bfb04b73a2bde01 264 SUPERFAMILY SSF47413 4 61 9.38E-13 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6213 c30b1bbdda65046d3bfb04b73a2bde01 264 SMART SM00530 7 62 2.9E-10 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_6213 c30b1bbdda65046d3bfb04b73a2bde01 264 Pfam PF13560 Helix-turn-helix domain 4 65 3.4E-11 T 19-04-2016 AMED_0248 3b961e22bc911e929bb43a314ae409de 144 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 120 1.6E-10 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_0248 3b961e22bc911e929bb43a314ae409de 144 Gene3D G3DSA:3.10.180.10 2 136 1.1E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0248 3b961e22bc911e929bb43a314ae409de 144 SUPERFAMILY SSF54593 4 127 3.09E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6027 243363f9d64d7cbdac99f1f808cbf2d1 308 Gene3D G3DSA:2.60.200.30 156 268 7.7E-36 T 19-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_6027 243363f9d64d7cbdac99f1f808cbf2d1 308 Hamap MF_00361 NAD kinase [nadK]. 5 294 29.537 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_6027 243363f9d64d7cbdac99f1f808cbf2d1 308 Gene3D G3DSA:3.40.50.10330 5 155 9.7E-34 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_6027 243363f9d64d7cbdac99f1f808cbf2d1 308 PANTHER PTHR20275 7 292 2.5E-73 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_6027 243363f9d64d7cbdac99f1f808cbf2d1 308 SUPERFAMILY SSF111331 6 300 1.02E-77 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMED_6027 243363f9d64d7cbdac99f1f808cbf2d1 308 Pfam PF01513 ATP-NAD kinase 10 279 1.7E-60 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMED_3113 1cef1cdaee68d4dd5465b2a94fecebc4 196 Pfam PF01966 HD domain 27 73 1.4E-6 T 19-04-2016 IPR006674 HD domain AMED_3113 1cef1cdaee68d4dd5465b2a94fecebc4 196 PANTHER PTHR35569 3 191 9.8E-56 T 19-04-2016 AMED_3113 1cef1cdaee68d4dd5465b2a94fecebc4 196 Gene3D G3DSA:1.10.3210.10 14 69 8.9E-9 T 19-04-2016 IPR006674 HD domain AMED_3113 1cef1cdaee68d4dd5465b2a94fecebc4 196 SUPERFAMILY SSF109604 19 131 2.25E-16 T 19-04-2016 AMED_3113 1cef1cdaee68d4dd5465b2a94fecebc4 196 SMART SM00471 22 141 8.3E-6 T 19-04-2016 IPR003607 HD/PDEase domain AMED_3113 1cef1cdaee68d4dd5465b2a94fecebc4 196 PANTHER PTHR35569:SF4 3 191 9.8E-56 T 19-04-2016 AMED_9340 1b7228635984e76b513d628e2d4d33bf 448 SUPERFAMILY SSF160424 32 110 3.66E-17 T 19-04-2016 IPR006728 Protein of unknown function DUF600 AMED_9340 1b7228635984e76b513d628e2d4d33bf 448 Pfam PF14021 Protein of unknown function (DUF4237) 363 447 1.7E-13 T 19-04-2016 IPR025331 Protein of unknown function DUF4237 AMED_2487 80130a0c9e9532ab59285d35460063ad 477 Gene3D G3DSA:1.20.1250.20 276 470 1.2E-17 T 19-04-2016 AMED_2487 80130a0c9e9532ab59285d35460063ad 477 Gene3D G3DSA:1.20.1250.20 20 206 1.1E-29 T 19-04-2016 AMED_2487 80130a0c9e9532ab59285d35460063ad 477 SUPERFAMILY SSF103473 9 205 4.84E-64 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2487 80130a0c9e9532ab59285d35460063ad 477 SUPERFAMILY SSF103473 255 469 4.84E-64 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2487 80130a0c9e9532ab59285d35460063ad 477 PANTHER PTHR23501 10 477 1.9E-141 T 19-04-2016 AMED_2487 80130a0c9e9532ab59285d35460063ad 477 PANTHER PTHR23501:SF76 10 477 1.9E-141 T 19-04-2016 AMED_2487 80130a0c9e9532ab59285d35460063ad 477 Pfam PF07690 Major Facilitator Superfamily 26 417 8.6E-54 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6892 f860209840c0bb25bd547beeaaa4d2ce 442 Gene3D G3DSA:2.60.40.1220 24 121 4.1E-20 T 19-04-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like AMED_6892 f860209840c0bb25bd547beeaaa4d2ce 442 PANTHER PTHR34820:SF2 1 441 3.0E-68 T 19-04-2016 AMED_6892 f860209840c0bb25bd547beeaaa4d2ce 442 PANTHER PTHR34820 1 441 3.0E-68 T 19-04-2016 AMED_6892 f860209840c0bb25bd547beeaaa4d2ce 442 SUPERFAMILY SSF81296 24 122 1.19E-18 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_6892 f860209840c0bb25bd547beeaaa4d2ce 442 Pfam PF04234 CopC domain 25 121 1.2E-16 T 19-04-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMED_6892 f860209840c0bb25bd547beeaaa4d2ce 442 Pfam PF05425 Copper resistance protein D 329 435 6.9E-15 T 19-04-2016 IPR008457 Copper resistance protein D GO:0016021 AMED_2119 9a38a0e609015cb4c6ea5791b792379b 271 Pfam PF13814 Replication-relaxation 22 219 2.5E-48 T 19-04-2016 IPR025855 Plasmid replication-relaxation AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 58 375 1.2E-81 T 19-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 SUPERFAMILY SSF53850 57 376 6.12E-81 T 19-04-2016 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 Gene3D G3DSA:3.40.190.10 57 210 1.1E-42 T 19-04-2016 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 Gene3D G3DSA:3.40.190.10 237 373 6.7E-16 T 19-04-2016 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 PANTHER PTHR30570 46 376 8.7E-88 T 19-04-2016 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 PANTHER PTHR30570:SF0 46 376 8.7E-88 T 19-04-2016 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 PIRSF PIRSF002756 7 376 1.1E-107 T 19-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AMED_9006 dc64773396d4b912749b54247e1f5f3a 376 Pfam PF12849 PBP superfamily domain 45 346 5.9E-58 T 19-04-2016 IPR024370 PBP domain AMED_7977 f53749a056de20fbc468a12b38bc8e16 202 Gene3D G3DSA:3.40.50.1820 23 196 8.9E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7977 f53749a056de20fbc468a12b38bc8e16 202 PANTHER PTHR13136:SF4 56 202 7.3E-18 T 19-04-2016 AMED_7977 f53749a056de20fbc468a12b38bc8e16 202 PANTHER PTHR13136 56 202 7.3E-18 T 19-04-2016 IPR026555 KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein AMED_7977 f53749a056de20fbc468a12b38bc8e16 202 SUPERFAMILY SSF53474 4 199 2.47E-18 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4660 61a7099832b90856344d0ef7b6da96f0 133 TIGRFAM TIGR03668 Rv0121_F420: PPOX class probable F420-dependent enzyme, Rv0121 family 4 131 1.6E-49 T 19-04-2016 IPR019967 F420-dependent enzyme, PPOX class, family Rv0121, probable AMED_4660 61a7099832b90856344d0ef7b6da96f0 133 Gene3D G3DSA:2.30.110.10 1 132 1.3E-33 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4660 61a7099832b90856344d0ef7b6da96f0 133 SUPERFAMILY SSF50475 1 130 5.3E-25 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4660 61a7099832b90856344d0ef7b6da96f0 133 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 4 95 7.1E-13 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 235 2.9E-35 T 19-04-2016 AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 180 0.0016 T 19-04-2016 AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PANTHER PTHR24321:SF6 2 238 5.6E-15 T 19-04-2016 AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PANTHER PTHR24321 2 238 5.6E-15 T 19-04-2016 AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 Gene3D G3DSA:3.40.50.720 2 236 1.8E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 SUPERFAMILY SSF51735 1 237 2.19E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5647 35def531c6d3f06d5da9c05df20c191f 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.5E-20 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7719 764292ecd3f22e08673624fde696b004 192 Pfam PF00857 Isochorismatase family 3 185 3.7E-30 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7719 764292ecd3f22e08673624fde696b004 192 PANTHER PTHR11080:SF2 3 181 1.7E-41 T 19-04-2016 AMED_7719 764292ecd3f22e08673624fde696b004 192 PANTHER PTHR11080 3 181 1.7E-41 T 19-04-2016 AMED_7719 764292ecd3f22e08673624fde696b004 192 SUPERFAMILY SSF52499 2 186 9.55E-45 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7719 764292ecd3f22e08673624fde696b004 192 Gene3D G3DSA:3.40.50.850 2 184 2.2E-53 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_1279 dfa6c429e3ec76c14933643652694883 374 Pfam PF01494 FAD binding domain 1 318 2.1E-17 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_1279 dfa6c429e3ec76c14933643652694883 374 PANTHER PTHR13789 1 325 6.8E-76 T 19-04-2016 AMED_1279 dfa6c429e3ec76c14933643652694883 374 SUPERFAMILY SSF51905 1 156 1.72E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1279 dfa6c429e3ec76c14933643652694883 374 SUPERFAMILY SSF51905 243 335 1.72E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1279 dfa6c429e3ec76c14933643652694883 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 287 3.9E-10 T 19-04-2016 AMED_1279 dfa6c429e3ec76c14933643652694883 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 135 150 3.9E-10 T 19-04-2016 AMED_1279 dfa6c429e3ec76c14933643652694883 374 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 256 271 3.9E-10 T 19-04-2016 AMED_1279 dfa6c429e3ec76c14933643652694883 374 PANTHER PTHR13789:SF186 1 325 6.8E-76 T 19-04-2016 AMED_1279 dfa6c429e3ec76c14933643652694883 374 Gene3D G3DSA:3.50.50.60 245 324 2.6E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1279 dfa6c429e3ec76c14933643652694883 374 Gene3D G3DSA:3.50.50.60 1 161 2.6E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 SUPERFAMILY SSF88659 78 157 7.29E-12 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 SUPERFAMILY SSF54427 173 284 1.37E-7 T 19-04-2016 IPR032710 NTF2-like domain AMED_5625 5217e83243c81bdf236aa0748044ef75 289 SUPERFAMILY SSF88946 6 65 5.1E-8 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 PANTHER PTHR30173:SF25 7 284 7.4E-65 T 19-04-2016 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 PANTHER PTHR30173 7 284 7.4E-65 T 19-04-2016 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 Pfam PF08281 Sigma-70, region 4 104 156 8.1E-12 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 156 1.0E-12 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 Pfam PF04542 Sigma-70 region 2 9 68 6.1E-9 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 Gene3D G3DSA:3.10.450.50 173 281 1.7E-4 T 19-04-2016 IPR032710 NTF2-like domain AMED_5625 5217e83243c81bdf236aa0748044ef75 289 Gene3D G3DSA:1.10.1740.10 7 69 4.2E-8 T 19-04-2016 AMED_5625 5217e83243c81bdf236aa0748044ef75 289 Gene3D G3DSA:1.10.10.10 104 156 1.7E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8363 63269e035b299088303b447b5ee11b02 225 Pfam PF13302 Acetyltransferase (GNAT) domain 35 179 1.2E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8363 63269e035b299088303b447b5ee11b02 225 SUPERFAMILY SSF55729 30 202 2.52E-18 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8363 63269e035b299088303b447b5ee11b02 225 ProSitePatterns PS01322 Phosphotriesterase family signature 1. 146 154 - T 19-04-2016 IPR017947 Aryldialkylphosphatase, zinc-binding site GO:0008270|GO:0009056|GO:0016788 AMED_8363 63269e035b299088303b447b5ee11b02 225 Gene3D G3DSA:3.40.630.30 30 202 3.0E-18 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 PANTHER PTHR30055 5 195 2.8E-20 T 19-04-2016 AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.1E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 Gene3D G3DSA:1.10.357.10 5 155 1.3E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 SUPERFAMILY SSF46689 5 77 1.18E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.9E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2259 75b1342fc9a89839a25bbcd60057ca1e 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.9E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 SUPERFAMILY SSF48498 84 190 5.17E-12 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6990 9b818117f97e8c78407304e918c4aed1 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 3.0E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 Pfam PF13977 Bacterial transcriptional repressor 86 179 2.9E-7 T 19-04-2016 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 SUPERFAMILY SSF46689 3 86 3.28E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 PANTHER PTHR30055 1 195 2.4E-22 T 19-04-2016 AMED_6990 9b818117f97e8c78407304e918c4aed1 196 Gene3D G3DSA:1.10.357.10 6 190 3.8E-35 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2069 6869c401f89b5d1a81ae8592b7b47b08 248 PANTHER PTHR30283 2 217 4.1E-36 T 19-04-2016 AMED_2069 6869c401f89b5d1a81ae8592b7b47b08 248 PANTHER PTHR30283:SF3 2 217 4.1E-36 T 19-04-2016 AMED_2069 6869c401f89b5d1a81ae8592b7b47b08 248 Pfam PF03883 Protein of unknown function (DUF328) 2 226 4.0E-36 T 19-04-2016 IPR005583 Peroxide stress protein YaaA AMED_7399 1322b06f519273b74c6cc3e8bb5bf1e4 369 Pfam PF13692 Glycosyl transferases group 1 191 327 1.3E-30 T 19-04-2016 AMED_7399 1322b06f519273b74c6cc3e8bb5bf1e4 369 Pfam PF13439 Glycosyltransferase Family 4 13 171 3.3E-27 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_7399 1322b06f519273b74c6cc3e8bb5bf1e4 369 PANTHER PTHR12526 3 363 6.2E-59 T 19-04-2016 AMED_7399 1322b06f519273b74c6cc3e8bb5bf1e4 369 Gene3D G3DSA:3.40.50.2000 160 341 1.1E-36 T 19-04-2016 AMED_7399 1322b06f519273b74c6cc3e8bb5bf1e4 369 PANTHER PTHR12526:SF374 3 363 6.2E-59 T 19-04-2016 AMED_7399 1322b06f519273b74c6cc3e8bb5bf1e4 369 SUPERFAMILY SSF53756 7 361 1.7E-79 T 19-04-2016 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 Gene3D G3DSA:1.10.357.10 55 183 2.6E-12 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 PANTHER PTHR30055:SF75 1 180 6.7E-22 T 19-04-2016 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 Gene3D G3DSA:1.10.10.60 7 54 1.1E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 SUPERFAMILY SSF46689 3 80 1.16E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 5.2E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.2E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 2.5E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7039 d68be55c99e14e2f2e3f8ca2565aeb5f 190 PANTHER PTHR30055 1 180 6.7E-22 T 19-04-2016 AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 SUPERFAMILY SSF52540 340 526 4.86E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 PANTHER PTHR19211 1 535 0.0 T 19-04-2016 AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 Pfam PF12848 ABC transporter 240 314 6.1E-7 T 19-04-2016 IPR032781 ABC-transporter extension domain AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 Gene3D G3DSA:3.40.50.300 337 526 5.5E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 Gene3D G3DSA:3.40.50.300 136 287 6.6E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 Gene3D G3DSA:3.40.50.300 5 99 6.6E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 SMART SM00382 360 527 6.5E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 SMART SM00382 26 242 4.4E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 PANTHER PTHR19211:SF53 1 535 0.0 T 19-04-2016 AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 SUPERFAMILY SSF52540 3 239 1.49E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 Pfam PF00005 ABC transporter 17 197 4.3E-21 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2861 d8ecdebf9c02a00b4543d2f1d71ca481 542 Pfam PF00005 ABC transporter 353 481 7.0E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 PANTHER PTHR11938 174 504 7.1E-78 T 19-04-2016 AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 SUPERFAMILY SSF51395 31 521 3.19E-124 T 19-04-2016 AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 PANTHER PTHR11938:SF50 174 504 7.1E-78 T 19-04-2016 AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 Gene3D G3DSA:3.20.20.70 64 514 1.0E-114 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 PIRSF PIRSF500060 25 543 9.0E-225 T 19-04-2016 IPR027283 Glutamate synthase large subunit-like protein, bacteria AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 PIRSF PIRSF006429 22 544 1.6E-159 T 19-04-2016 IPR024188 Glutamate synthase large subunit-like protein AMED_3539 d97f20fa1e61f263138466bdc39db2e0 545 Pfam PF01645 Conserved region in glutamate synthase 173 489 7.9E-83 T 19-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 PANTHER PTHR30346:SF2 1 289 1.0E-66 T 19-04-2016 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 SUPERFAMILY SSF46785 2 103 4.65E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7376 398d35d50288c4e58b6acce777c22ded 290 Gene3D G3DSA:1.10.10.10 2 75 1.4E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7376 398d35d50288c4e58b6acce777c22ded 290 Pfam PF03466 LysR substrate binding domain 82 287 4.6E-25 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_7376 398d35d50288c4e58b6acce777c22ded 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 32 8.4E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 8.4E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 11 22 8.4E-8 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 Gene3D G3DSA:3.40.190.10 85 174 6.7E-14 T 19-04-2016 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 SUPERFAMILY SSF53850 83 289 1.13E-24 T 19-04-2016 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 2 54 6.2E-18 T 19-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 Gene3D G3DSA:3.40.190.10 175 259 3.0E-11 T 19-04-2016 AMED_7376 398d35d50288c4e58b6acce777c22ded 290 PANTHER PTHR30346 1 289 1.0E-66 T 19-04-2016 AMED_2032 d622d20c3199e1420f1623f230063b2a 484 PANTHER PTHR11751:SF10 114 482 8.6E-84 T 19-04-2016 AMED_2032 d622d20c3199e1420f1623f230063b2a 484 Gene3D G3DSA:3.40.640.10 166 375 2.8E-41 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2032 d622d20c3199e1420f1623f230063b2a 484 PANTHER PTHR11751 114 482 8.6E-84 T 19-04-2016 AMED_2032 d622d20c3199e1420f1623f230063b2a 484 SUPERFAMILY SSF53383 119 481 1.47E-71 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2032 d622d20c3199e1420f1623f230063b2a 484 SMART SM00345 34 93 6.5E-9 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2032 d622d20c3199e1420f1623f230063b2a 484 SUPERFAMILY SSF46785 27 97 1.71E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2032 d622d20c3199e1420f1623f230063b2a 484 Gene3D G3DSA:1.10.10.10 33 97 2.2E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2032 d622d20c3199e1420f1623f230063b2a 484 Pfam PF00155 Aminotransferase class I and II 159 445 2.4E-11 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_2032 d622d20c3199e1420f1623f230063b2a 484 Pfam PF00392 Bacterial regulatory proteins, gntR family 34 93 6.6E-11 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5235 3358bc4f247bc31275d5445b4e81743c 181 Pfam PF02575 YbaB/EbfC DNA-binding family 33 109 9.4E-11 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_5235 3358bc4f247bc31275d5445b4e81743c 181 SUPERFAMILY SSF82607 33 111 1.83E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_5235 3358bc4f247bc31275d5445b4e81743c 181 Gene3D G3DSA:3.30.1310.10 33 98 1.5E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_4059 d3bbfb9c3d8a006d083af90c28d7f070 440 Gene3D G3DSA:1.20.1250.20 230 425 6.1E-24 T 19-04-2016 AMED_4059 d3bbfb9c3d8a006d083af90c28d7f070 440 PANTHER PTHR23508:SF1 9 439 1.9E-140 T 19-04-2016 AMED_4059 d3bbfb9c3d8a006d083af90c28d7f070 440 Gene3D G3DSA:1.20.1250.20 15 204 1.7E-20 T 19-04-2016 AMED_4059 d3bbfb9c3d8a006d083af90c28d7f070 440 Pfam PF07690 Major Facilitator Superfamily 51 379 1.4E-27 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4059 d3bbfb9c3d8a006d083af90c28d7f070 440 PANTHER PTHR23508 9 439 1.9E-140 T 19-04-2016 AMED_4059 d3bbfb9c3d8a006d083af90c28d7f070 440 SUPERFAMILY SSF103473 9 421 9.29E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2413 6ba032a4b7a7582878751c169dbec11b 350 Pfam PF13830 Domain of unknown function (DUF4192) 12 321 2.7E-75 T 19-04-2016 IPR025447 Protein of unknown function DUF4192 AMED_5380 0df21b67d69a72c8dd2bcb87c0fb49c6 268 Pfam PF10503 Esterase PHB depolymerase 33 162 1.1E-5 T 19-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 AMED_5380 0df21b67d69a72c8dd2bcb87c0fb49c6 268 SUPERFAMILY SSF53474 10 256 5.54E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5380 0df21b67d69a72c8dd2bcb87c0fb49c6 268 Gene3D G3DSA:3.40.50.1820 28 263 1.3E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6070 dc507f95936eabf913eedb040386a46a 455 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 29 90 2.8E-8 T 19-04-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 SUPERFAMILY SSF55545 5 93 1.92E-12 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_6070 dc507f95936eabf913eedb040386a46a 455 Gene3D G3DSA:3.20.20.80 77 438 6.1E-110 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_6070 dc507f95936eabf913eedb040386a46a 455 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 94 266 1.2E-60 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 272 408 5.3E-26 T 19-04-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 SUPERFAMILY SSF51445 94 420 8.12E-96 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_6070 dc507f95936eabf913eedb040386a46a 455 PANTHER PTHR22600 35 439 6.5E-146 T 19-04-2016 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PANTHER PTHR22600:SF21 35 439 6.5E-146 T 19-04-2016 AMED_6070 dc507f95936eabf913eedb040386a46a 455 Gene3D G3DSA:3.30.379.10 28 76 8.2E-12 T 19-04-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 390 407 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 88 105 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 372 388 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 117 138 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 254 267 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 47 67 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_6070 dc507f95936eabf913eedb040386a46a 455 PRINTS PR00738 Glycosyl hydrolase family 20 signature 186 203 2.0E-39 T 19-04-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 AMED_2097 eead5cdebdaa6780c894810795805cdc 167 Pfam PF11343 Protein of unknown function (DUF3145) 10 165 3.8E-72 T 19-04-2016 IPR021491 Protein of unknown function DUF3145 AMED_0820 823c8d36ad69a97be7ec8edf37db0e42 107 Pfam PF11222 Protein of unknown function (DUF3017) 26 98 1.8E-22 T 19-04-2016 IPR021385 Protein of unknown function DUF3017 AMED_2723 786569c9ecf8216a84c249230eb6a93d 271 PANTHER PTHR22935:SF57 1 257 4.2E-118 T 19-04-2016 AMED_2723 786569c9ecf8216a84c249230eb6a93d 271 PANTHER PTHR22935 1 257 4.2E-118 T 19-04-2016 AMED_2723 786569c9ecf8216a84c249230eb6a93d 271 Gene3D G3DSA:3.40.710.10 8 265 1.1E-47 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2723 786569c9ecf8216a84c249230eb6a93d 271 SUPERFAMILY SSF56601 6 265 8.95E-56 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2723 786569c9ecf8216a84c249230eb6a93d 271 Pfam PF00144 Beta-lactamase 18 263 7.2E-36 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 PANTHER PTHR30328 8 174 2.4E-32 T 19-04-2016 AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 Gene3D G3DSA:1.10.10.60 4 59 1.9E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 SUPERFAMILY SSF48498 83 194 7.87E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 Gene3D G3DSA:1.10.357.10 60 187 5.0E-19 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 63 2.3E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 PANTHER PTHR30328:SF7 8 174 2.4E-32 T 19-04-2016 AMED_4341 b4646a56c60fd397cdc45d71173e6b1f 200 SUPERFAMILY SSF46689 5 83 2.67E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6228 6f7304e7f9c0af6b4566db7a11689e00 463 PANTHER PTHR24095 38 448 2.6E-55 T 19-04-2016 AMED_6228 6f7304e7f9c0af6b4566db7a11689e00 463 SUPERFAMILY SSF52777 215 448 3.67E-39 T 19-04-2016 AMED_6228 6f7304e7f9c0af6b4566db7a11689e00 463 Pfam PF00668 Condensation domain 66 323 7.9E-45 T 19-04-2016 IPR001242 Condensation domain AMED_6228 6f7304e7f9c0af6b4566db7a11689e00 463 SUPERFAMILY SSF52777 36 226 2.22E-38 T 19-04-2016 AMED_6228 6f7304e7f9c0af6b4566db7a11689e00 463 PANTHER PTHR24095:SF137 38 448 2.6E-55 T 19-04-2016 AMED_8192 0649638908ed34f327cb5a2316074221 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 1.9E-25 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8192 0649638908ed34f327cb5a2316074221 333 PANTHER PTHR24220:SF535 9 333 6.3E-146 T 19-04-2016 AMED_8192 0649638908ed34f327cb5a2316074221 333 Pfam PF00005 ABC transporter 27 186 3.2E-25 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_8192 0649638908ed34f327cb5a2316074221 333 PANTHER PTHR24220 9 333 6.3E-146 T 19-04-2016 AMED_8192 0649638908ed34f327cb5a2316074221 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 302 6.5E-19 T 19-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMED_8192 0649638908ed34f327cb5a2316074221 333 SMART SM00382 36 236 1.9E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_8192 0649638908ed34f327cb5a2316074221 333 SUPERFAMILY SSF52540 7 257 1.28E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8192 0649638908ed34f327cb5a2316074221 333 Gene3D G3DSA:3.40.50.300 7 260 2.5E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8192 0649638908ed34f327cb5a2316074221 333 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_7757 ddab74b5b5c1157fd136b36fbb23b871 168 PANTHER PTHR30328:SF27 8 127 8.2E-13 T 19-04-2016 AMED_7757 ddab74b5b5c1157fd136b36fbb23b871 168 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 48 3.3E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7757 ddab74b5b5c1157fd136b36fbb23b871 168 Gene3D G3DSA:1.10.357.10 6 144 6.8E-17 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7757 ddab74b5b5c1157fd136b36fbb23b871 168 SUPERFAMILY SSF46689 6 68 4.99E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7757 ddab74b5b5c1157fd136b36fbb23b871 168 PANTHER PTHR30328 8 127 8.2E-13 T 19-04-2016 AMED_8026 649c5f00df8379d500dba7c07baf36d9 309 Gene3D G3DSA:1.10.3720.10 96 302 9.8E-27 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8026 649c5f00df8379d500dba7c07baf36d9 309 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 29 80 1.3E-9 T 19-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMED_8026 649c5f00df8379d500dba7c07baf36d9 309 PANTHER PTHR30465 22 306 2.8E-90 T 19-04-2016 AMED_8026 649c5f00df8379d500dba7c07baf36d9 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 305 1.5E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8026 649c5f00df8379d500dba7c07baf36d9 309 SUPERFAMILY SSF161098 98 286 3.79E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8026 649c5f00df8379d500dba7c07baf36d9 309 PANTHER PTHR30465:SF2 22 306 2.8E-90 T 19-04-2016 AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 SUPERFAMILY SSF55073 60 213 1.26E-43 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 SMART SM00267 37 212 2.1E-42 T 19-04-2016 IPR000160 GGDEF domain AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 Gene3D G3DSA:3.30.70.270 57 216 2.5E-47 T 19-04-2016 AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 55 212 3.7E-39 T 19-04-2016 IPR000160 GGDEF domain AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 PANTHER PTHR10799 83 213 1.6E-26 T 19-04-2016 AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 Pfam PF00990 Diguanylate cyclase, GGDEF domain 56 208 2.8E-35 T 19-04-2016 IPR000160 GGDEF domain AMED_8999 bbe101c8291feb8e301e24f58fca34d6 224 PANTHER PTHR10799:SF750 83 213 1.6E-26 T 19-04-2016 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 PANTHER PTHR11908 2 147 2.7E-42 T 19-04-2016 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 SUPERFAMILY SSF47741 85 152 1.06E-31 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 Gene3D G3DSA:3.10.20.30 2 75 1.6E-24 T 19-04-2016 IPR012675 Beta-grasp domain AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 Pfam PF01799 [2Fe-2S] binding domain 74 146 2.2E-29 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 Gene3D G3DSA:1.10.150.120 76 153 3.9E-35 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 54 7.0E-7 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_4584 daa3cb1ebcee53d13b6bc30720d31519 156 SUPERFAMILY SSF54292 3 88 2.1E-20 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_5324 c25dc71c9f1527c5159d0bf956ad52c0 208 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 91 4.1E-10 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_5324 c25dc71c9f1527c5159d0bf956ad52c0 208 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 69 91 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 1.59E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 1.59E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 SUPERFAMILY SSF46689 3 79 2.29E-21 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 SUPERFAMILY SSF48498 77 187 1.68E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 Gene3D G3DSA:1.10.357.10 53 187 7.1E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 PANTHER PTHR30055:SF33 4 188 1.1E-42 T 19-04-2016 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 Gene3D G3DSA:1.10.10.60 36 52 2.0E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 ProSitePatterns PS01081 TetR-type HTH domain signature. 19 50 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 Gene3D G3DSA:1.10.10.60 4 35 1.3E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 1.3E-21 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1382 533af2c3d24cd54e2c0cad8c900d0859 188 PANTHER PTHR30055 4 188 1.1E-42 T 19-04-2016 AMED_5328 8c04c9878f2c26170db2f71651b8e495 204 SUPERFAMILY SSF55469 21 202 1.44E-41 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5328 8c04c9878f2c26170db2f71651b8e495 204 PANTHER PTHR23026 21 202 7.6E-81 T 19-04-2016 AMED_5328 8c04c9878f2c26170db2f71651b8e495 204 Gene3D G3DSA:3.40.109.10 21 202 3.3E-40 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5328 8c04c9878f2c26170db2f71651b8e495 204 Pfam PF00881 Nitroreductase family 23 182 1.1E-16 T 19-04-2016 IPR029479 Nitroreductase AMED_5328 8c04c9878f2c26170db2f71651b8e495 204 PANTHER PTHR23026:SF110 21 202 7.6E-81 T 19-04-2016 AMED_2695 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 PANTHER PTHR20852 94 374 3.2E-56 T 19-04-2016 AMED_2695 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 SMART SM01230 131 362 1.6E-58 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2695 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 PANTHER PTHR20852:SF35 94 374 3.2E-56 T 19-04-2016 AMED_2695 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 SUPERFAMILY SSF55931 131 429 4.12E-59 T 19-04-2016 AMED_2695 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 Pfam PF00120 Glutamine synthetase, catalytic domain 132 375 4.8E-50 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMED_2695 07c6b0b1d4f96fbacd5f483eb2c11d8b 435 Gene3D G3DSA:3.30.590.10 134 416 1.2E-55 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMED_5177 9d8945fb0ac9d250305fe04fc2619c7c 284 Pfam PF00296 Luciferase-like monooxygenase 18 232 5.2E-48 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5177 9d8945fb0ac9d250305fe04fc2619c7c 284 Gene3D G3DSA:3.20.20.30 18 231 1.0E-58 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5177 9d8945fb0ac9d250305fe04fc2619c7c 284 PANTHER PTHR30011 5 243 4.3E-114 T 19-04-2016 AMED_5177 9d8945fb0ac9d250305fe04fc2619c7c 284 TIGRFAM TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family 18 257 8.2E-75 T 19-04-2016 IPR019921 Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted AMED_5177 9d8945fb0ac9d250305fe04fc2619c7c 284 SUPERFAMILY SSF51679 18 235 7.33E-54 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5177 9d8945fb0ac9d250305fe04fc2619c7c 284 PANTHER PTHR30011:SF25 5 243 4.3E-114 T 19-04-2016 AMED_1671 933ac9594eb36773a5beca87c9939330 218 SUPERFAMILY SSF55021 4 71 1.33E-6 T 19-04-2016 AMED_1671 933ac9594eb36773a5beca87c9939330 218 Gene3D G3DSA:3.30.70.260 6 71 7.4E-4 T 19-04-2016 AMED_7842 6793d1f8c9221e9991b20540f81d0413 360 Pfam PF01609 Transposase DDE domain 97 326 4.0E-15 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_7842 6793d1f8c9221e9991b20540f81d0413 360 Pfam PF13808 DDE_Tnp_1-associated 1 80 4.6E-14 T 19-04-2016 IPR032806 H repeat-associated protein, N-terminal AMED_7842 6793d1f8c9221e9991b20540f81d0413 360 PANTHER PTHR30298 1 360 2.8E-30 T 19-04-2016 AMED_2449 123dd7f46da20607ee290b3108bfe72b 377 PANTHER PTHR10803 1 371 1.8E-93 T 19-04-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 AMED_2449 123dd7f46da20607ee290b3108bfe72b 377 Pfam PF02374 Anion-transporting ATPase 2 285 3.2E-54 T 19-04-2016 IPR025723 Anion-transporting ATPase-like domain AMED_2449 123dd7f46da20607ee290b3108bfe72b 377 SUPERFAMILY SSF52540 2 254 1.01E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2449 123dd7f46da20607ee290b3108bfe72b 377 PANTHER PTHR10803:SF9 1 371 1.8E-93 T 19-04-2016 AMED_2449 123dd7f46da20607ee290b3108bfe72b 377 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 6 284 3.0E-50 T 19-04-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 AMED_2449 123dd7f46da20607ee290b3108bfe72b 377 Gene3D G3DSA:3.40.50.300 2 274 1.0E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2468 945139f88cff1582472658fcc18c3cda 221 TIGRFAM TIGR02453 TIGR02453: TIGR02453 family protein 7 211 2.5E-40 T 19-04-2016 IPR012808 Conserved hypothetical protein CHP02453 AMED_2468 945139f88cff1582472658fcc18c3cda 221 PIRSF PIRSF028451 2 216 3.9E-38 T 19-04-2016 IPR015996 Uncharacterised conserved protein UCP028451 AMED_2468 945139f88cff1582472658fcc18c3cda 221 Pfam PF09365 Conserved hypothetical protein (DUF2461) 10 208 2.9E-51 T 19-04-2016 IPR012808 Conserved hypothetical protein CHP02453 AMED_8354 c294ddd1efb8d1af3f197835843abceb 319 PANTHER PTHR10459:SF53 124 275 1.9E-12 T 19-04-2016 AMED_8354 c294ddd1efb8d1af3f197835843abceb 319 PANTHER PTHR10459 124 275 1.9E-12 T 19-04-2016 AMED_9156 13f4eff577df7757609be240b8f83afd 395 SUPERFAMILY SSF103473 6 380 1.29E-33 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9156 13f4eff577df7757609be240b8f83afd 395 Pfam PF07690 Major Facilitator Superfamily 9 302 2.4E-18 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9156 13f4eff577df7757609be240b8f83afd 395 PANTHER PTHR23517 14 392 5.7E-24 T 19-04-2016 AMED_9156 13f4eff577df7757609be240b8f83afd 395 Gene3D G3DSA:1.20.1250.20 6 186 7.1E-21 T 19-04-2016 AMED_9156 13f4eff577df7757609be240b8f83afd 395 Gene3D G3DSA:1.20.1250.20 200 377 5.1E-8 T 19-04-2016 AMED_6473 f19a37f971844ba504b625f9360fda6b 304 Pfam PF00561 alpha/beta hydrolase fold 33 130 2.0E-19 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6473 f19a37f971844ba504b625f9360fda6b 304 PRINTS PR00412 Epoxide hydrolase signature 38 56 2.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6473 f19a37f971844ba504b625f9360fda6b 304 PRINTS PR00412 Epoxide hydrolase signature 101 114 2.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6473 f19a37f971844ba504b625f9360fda6b 304 PRINTS PR00412 Epoxide hydrolase signature 272 294 2.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_6473 f19a37f971844ba504b625f9360fda6b 304 SUPERFAMILY SSF53474 10 296 2.54E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6473 f19a37f971844ba504b625f9360fda6b 304 PANTHER PTHR10992:SF764 18 297 6.9E-56 T 19-04-2016 AMED_6473 f19a37f971844ba504b625f9360fda6b 304 Gene3D G3DSA:3.40.50.1820 11 296 2.6E-62 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6473 f19a37f971844ba504b625f9360fda6b 304 PANTHER PTHR10992 18 297 6.9E-56 T 19-04-2016 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 PANTHER PTHR30055:SF19 3 165 3.3E-53 T 19-04-2016 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 SUPERFAMILY SSF48498 84 186 1.53E-10 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7440 eb95e2bee68c25505868a84303b323d2 190 PANTHER PTHR30055 3 165 3.3E-53 T 19-04-2016 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 2.1E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 Gene3D G3DSA:1.10.357.10 6 184 7.9E-41 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 3.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 3.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7440 eb95e2bee68c25505868a84303b323d2 190 SUPERFAMILY SSF46689 5 87 5.49E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6325 b5664e9d5ec06a6e3f44a1528413622a 125 Gene3D G3DSA:3.10.180.10 7 120 1.2E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6325 b5664e9d5ec06a6e3f44a1528413622a 125 SUPERFAMILY SSF54593 8 123 8.8E-18 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6325 b5664e9d5ec06a6e3f44a1528413622a 125 PANTHER PTHR35908:SF2 1 119 5.3E-30 T 19-04-2016 AMED_6325 b5664e9d5ec06a6e3f44a1528413622a 125 PANTHER PTHR35908 1 119 5.3E-30 T 19-04-2016 AMED_6139 21c2d925a39e6fd77251101c3d52545e 146 PANTHER PTHR21660:SF1 25 145 8.7E-42 T 19-04-2016 AMED_6139 21c2d925a39e6fd77251101c3d52545e 146 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 28 139 3.7E-26 T 19-04-2016 IPR003736 Phenylacetic acid degradation-related domain AMED_6139 21c2d925a39e6fd77251101c3d52545e 146 Gene3D G3DSA:3.10.129.10 19 142 3.7E-40 T 19-04-2016 IPR029069 HotDog domain AMED_6139 21c2d925a39e6fd77251101c3d52545e 146 PANTHER PTHR21660 25 145 8.7E-42 T 19-04-2016 AMED_6139 21c2d925a39e6fd77251101c3d52545e 146 SUPERFAMILY SSF54637 26 143 2.04E-25 T 19-04-2016 IPR029069 HotDog domain AMED_6139 21c2d925a39e6fd77251101c3d52545e 146 Pfam PF03061 Thioesterase superfamily 54 130 1.1E-12 T 19-04-2016 IPR006683 Thioesterase domain AMED_0209 299237edeb50554cbd61b9a41510f143 239 PANTHER PTHR23416:SF8 2 205 8.2E-50 T 19-04-2016 AMED_0209 299237edeb50554cbd61b9a41510f143 239 SUPERFAMILY SSF51161 4 207 2.25E-51 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_0209 299237edeb50554cbd61b9a41510f143 239 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 173 205 1.9E-7 T 19-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 AMED_0209 299237edeb50554cbd61b9a41510f143 239 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 48 2.9E-8 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_0209 299237edeb50554cbd61b9a41510f143 239 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 133 1.3E-4 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_0209 299237edeb50554cbd61b9a41510f143 239 PANTHER PTHR23416 2 205 8.2E-50 T 19-04-2016 AMED_0209 299237edeb50554cbd61b9a41510f143 239 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 143 171 - T 19-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 AMED_0209 299237edeb50554cbd61b9a41510f143 239 Gene3D G3DSA:2.160.10.10 3 201 5.9E-42 T 19-04-2016 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 209 7.0E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 SUPERFAMILY SSF46894 148 211 2.72E-15 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 PANTHER PTHR26402 8 209 3.7E-57 T 19-04-2016 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 SMART SM00421 153 210 4.0E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 Pfam PF00072 Response regulator receiver domain 10 121 6.8E-24 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 SMART SM00448 8 121 7.5E-27 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 Gene3D G3DSA:1.10.10.10 127 210 3.8E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 SUPERFAMILY SSF52172 8 133 4.55E-29 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 Gene3D G3DSA:3.40.50.2300 8 126 1.7E-32 T 19-04-2016 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 PANTHER PTHR26402:SF151 8 209 3.7E-57 T 19-04-2016 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 9.0E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 9.0E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_5573 3778b9d242c6ea77cb25613f6e309e3e 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 9.0E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8635 f41ab926608822c6e24e50aeff041417 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 3.4E-25 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8635 f41ab926608822c6e24e50aeff041417 226 SMART SM00448 1 112 2.5E-38 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8635 f41ab926608822c6e24e50aeff041417 226 SUPERFAMILY SSF52172 2 173 6.26E-40 T 19-04-2016 IPR011006 CheY-like superfamily AMED_8635 f41ab926608822c6e24e50aeff041417 226 SMART SM00862 145 220 2.1E-24 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_8635 f41ab926608822c6e24e50aeff041417 226 Pfam PF00072 Response regulator receiver domain 4 112 2.5E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_8635 f41ab926608822c6e24e50aeff041417 226 PANTHER PTHR26402:SF578 1 226 2.3E-87 T 19-04-2016 AMED_8635 f41ab926608822c6e24e50aeff041417 226 Gene3D G3DSA:1.10.10.10 124 221 3.5E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8635 f41ab926608822c6e24e50aeff041417 226 Gene3D G3DSA:3.40.50.2300 2 120 4.9E-37 T 19-04-2016 AMED_8635 f41ab926608822c6e24e50aeff041417 226 PANTHER PTHR26402 1 226 2.3E-87 T 19-04-2016 AMED_6449 3a7046cefe6d2dbf995b1cefb93e9002 705 PANTHER PTHR23028 1 408 7.6E-92 T 19-04-2016 AMED_6449 3a7046cefe6d2dbf995b1cefb93e9002 705 PANTHER PTHR23028 429 522 7.6E-92 T 19-04-2016 AMED_6449 3a7046cefe6d2dbf995b1cefb93e9002 705 PANTHER PTHR23028:SF53 1 408 7.6E-92 T 19-04-2016 AMED_6449 3a7046cefe6d2dbf995b1cefb93e9002 705 PANTHER PTHR23028:SF53 429 522 7.6E-92 T 19-04-2016 AMED_6449 3a7046cefe6d2dbf995b1cefb93e9002 705 Pfam PF01757 Acyltransferase family 24 331 1.7E-26 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_4833 c856badcb93554229db573d4aafcdb2c 144 PANTHER PTHR35862 4 137 8.3E-47 T 19-04-2016 AMED_4833 c856badcb93554229db573d4aafcdb2c 144 Gene3D G3DSA:3.10.450.40 4 130 8.0E-47 T 19-04-2016 AMED_4833 c856badcb93554229db573d4aafcdb2c 144 Pfam PF04965 Gene 25-like lysozyme 29 117 2.4E-25 T 19-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD AMED_4833 c856badcb93554229db573d4aafcdb2c 144 PANTHER PTHR35862:SF2 4 137 8.3E-47 T 19-04-2016 AMED_4833 c856badcb93554229db573d4aafcdb2c 144 SUPERFAMILY SSF160719 23 130 2.09E-35 T 19-04-2016 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 SUPERFAMILY SSF161098 195 317 7.06E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 SUPERFAMILY SSF161098 92 159 7.06E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 PANTHER PTHR30465 189 332 1.6E-113 T 19-04-2016 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 PANTHER PTHR30465 2 167 1.6E-113 T 19-04-2016 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 Gene3D G3DSA:1.10.3720.10 90 160 4.8E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 Gene3D G3DSA:1.10.3720.10 198 322 4.8E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 PANTHER PTHR30465:SF0 189 332 1.6E-113 T 19-04-2016 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 PANTHER PTHR30465:SF0 2 167 1.6E-113 T 19-04-2016 AMED_8901 cded3230dd709b854cdd1e3bdd396252 333 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 331 3.2E-37 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5729 de8c9d2750f791c1c5b4930194b20f6e 233 SMART SM00418 12 90 0.0066 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_5729 de8c9d2750f791c1c5b4930194b20f6e 233 PANTHER PTHR33204:SF9 2 156 2.8E-27 T 19-04-2016 AMED_5729 de8c9d2750f791c1c5b4930194b20f6e 233 Pfam PF01638 HxlR-like helix-turn-helix 16 101 1.5E-20 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_5729 de8c9d2750f791c1c5b4930194b20f6e 233 Gene3D G3DSA:1.10.10.10 3 100 2.0E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5729 de8c9d2750f791c1c5b4930194b20f6e 233 PANTHER PTHR33204 2 156 2.8E-27 T 19-04-2016 AMED_5729 de8c9d2750f791c1c5b4930194b20f6e 233 SUPERFAMILY SSF46785 3 105 4.85E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 5.7E-15 T 19-04-2016 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 5.7E-15 T 19-04-2016 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 5.7E-15 T 19-04-2016 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 5.7E-15 T 19-04-2016 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 PANTHER PTHR13789:SF251 2 365 6.5E-66 T 19-04-2016 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 Gene3D G3DSA:3.50.50.60 2 171 1.3E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 Gene3D G3DSA:3.50.50.60 264 344 1.3E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 SUPERFAMILY SSF51905 263 366 5.02E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 SUPERFAMILY SSF51905 2 166 5.02E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 Pfam PF01494 FAD binding domain 1 314 2.6E-19 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5724 22e2bcce23f2d63cf57bcc50f133fe6a 397 PANTHER PTHR13789 2 365 6.5E-66 T 19-04-2016 AMED_5675 492a3b981ba807081d2d1c8bfd218e7c 104 PANTHER PTHR30146 22 104 6.3E-17 T 19-04-2016 AMED_5675 492a3b981ba807081d2d1c8bfd218e7c 104 Pfam PF13377 Periplasmic binding protein-like domain 22 96 2.5E-17 T 19-04-2016 AMED_5675 492a3b981ba807081d2d1c8bfd218e7c 104 SUPERFAMILY SSF53822 20 101 1.41E-19 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_5675 492a3b981ba807081d2d1c8bfd218e7c 104 Gene3D G3DSA:3.40.50.2300 22 97 1.3E-19 T 19-04-2016 AMED_2507 a874dfe2823aaa0dbfac3abd1ef03fbc 166 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 56 162 4.7E-34 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_2507 a874dfe2823aaa0dbfac3abd1ef03fbc 166 PANTHER PTHR39428:SF2 15 166 3.3E-48 T 19-04-2016 AMED_2507 a874dfe2823aaa0dbfac3abd1ef03fbc 166 PANTHER PTHR39428 15 166 3.3E-48 T 19-04-2016 AMED_2507 a874dfe2823aaa0dbfac3abd1ef03fbc 166 Pfam PF04075 Domain of unknown function (DUF385) 30 163 6.6E-37 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_4024 8594f3bd2cf95e346b5d5c9c5112199c 269 SUPERFAMILY SSF53901 72 183 5.23E-12 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_4024 8594f3bd2cf95e346b5d5c9c5112199c 269 Gene3D G3DSA:3.40.47.10 75 181 1.1E-9 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_0893 5c7106eb461e13a9ac4753337ac3968c 356 Gene3D G3DSA:3.20.20.70 3 355 2.5E-143 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0893 5c7106eb461e13a9ac4753337ac3968c 356 PANTHER PTHR10578 3 356 6.8E-172 T 19-04-2016 AMED_0893 5c7106eb461e13a9ac4753337ac3968c 356 PIRSF PIRSF000138 1 356 1.1E-133 T 19-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 AMED_0893 5c7106eb461e13a9ac4753337ac3968c 356 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 - T 19-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 AMED_0893 5c7106eb461e13a9ac4753337ac3968c 356 SUPERFAMILY SSF51395 3 353 2.44E-100 T 19-04-2016 AMED_0893 5c7106eb461e13a9ac4753337ac3968c 356 Pfam PF01070 FMN-dependent dehydrogenase 11 355 2.5E-134 T 19-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 AMED_9248 5301e5886b9b72e960f494d219e73a3b 192 Pfam PF14436 Bacterial EndoU nuclease 10 76 9.0E-10 T 19-04-2016 IPR029501 Bacterial EndoU nuclease AMED_3201 475a146dadbfd8be394ea45fc2fed9e1 139 PANTHER PTHR33495 3 131 7.3E-21 T 19-04-2016 AMED_3201 475a146dadbfd8be394ea45fc2fed9e1 139 Pfam PF01740 STAS domain 23 123 6.1E-8 T 19-04-2016 IPR002645 STAS domain AMED_3201 475a146dadbfd8be394ea45fc2fed9e1 139 Gene3D G3DSA:3.30.750.24 18 125 3.9E-19 T 19-04-2016 IPR002645 STAS domain AMED_3201 475a146dadbfd8be394ea45fc2fed9e1 139 SUPERFAMILY SSF52091 18 125 1.2E-15 T 19-04-2016 IPR002645 STAS domain AMED_3201 475a146dadbfd8be394ea45fc2fed9e1 139 PANTHER PTHR33495:SF2 3 131 7.3E-21 T 19-04-2016 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Pfam PF00553 Cellulose binding domain 38 136 5.0E-29 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:2.60.40.290 37 138 2.0E-34 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 SUPERFAMILY SSF49384 37 137 1.26E-26 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 506 530 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 364 389 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 694 717 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 551 578 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 904 932 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 795 815 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 740 766 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 624 643 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 PRINTS PR00844 Glycosyl hydrolase family 48 signature 390 407 1.2E-101 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Pfam PF02011 Glycosyl hydrolase family 48 338 971 0.0 T 19-04-2016 IPR000556 Glycoside hydrolase, 48F GO:0004553|GO:0008810|GO:0030245 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:4.10.870.10 878 949 3.9E-29 T 19-04-2016 IPR027390 Endoglucanase F, domain 3 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 SMART SM00637 38 136 1.7E-43 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 SUPERFAMILY SSF48208 334 971 1.87E-274 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:1.50.10.10 333 422 1.0E-188 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:1.50.10.10 468 483 1.0E-188 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:1.50.10.10 950 971 1.0E-188 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5193 7868b9452dcae702920b909aafa9a01a 972 Gene3D G3DSA:1.50.10.10 558 875 1.0E-188 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_5381 16dfb28645e54602680cf0cbf9cb6755 114 Pfam PF14330 Domain of unknown function (DUF4387) 6 101 9.3E-32 T 19-04-2016 IPR025496 Protein of unknown function DUF4387 AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 PANTHER PTHR30055 5 149 7.7E-19 T 19-04-2016 AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 65 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.1E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 Gene3D G3DSA:1.10.357.10 19 194 8.4E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 SUPERFAMILY SSF46689 12 78 1.89E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5499 8fa449a9b9b5ee87c20af491e0ffbcf4 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 8.6E-17 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7753 bcfbceb036d837b68bd4765f21fb62ae 68 Gene3D G3DSA:2.30.30.320 2 67 6.9E-31 T 19-04-2016 IPR023387 DUF1653-like domain AMED_7753 bcfbceb036d837b68bd4765f21fb62ae 68 Pfam PF07866 Protein of unknown function (DUF1653) 5 64 3.8E-28 T 19-04-2016 IPR023387 DUF1653-like domain AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 Gene3D G3DSA:3.60.40.10 5 238 1.1E-42 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 Pfam PF13672 Protein phosphatase 2C 19 204 1.4E-14 T 19-04-2016 AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 SMART SM00332 7 236 5.2E-8 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 PANTHER PTHR13832:SF226 1 238 1.3E-28 T 19-04-2016 AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 SMART SM00331 8 238 3.3E-16 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 PANTHER PTHR13832 1 238 1.3E-28 T 19-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 AMED_3728 a3994abb287e19e4ee5f61d7ec6237f5 241 SUPERFAMILY SSF81606 6 238 1.7E-41 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_8780 fa39b0d48333788abf21b48cc3bfa838 723 SUPERFAMILY SSF52540 341 589 3.36E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8780 fa39b0d48333788abf21b48cc3bfa838 723 Gene3D G3DSA:3.40.50.300 337 549 2.2E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8780 fa39b0d48333788abf21b48cc3bfa838 723 Pfam PF01580 FtsK/SpoIIIE family 362 521 1.8E-5 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_0603 f78b97d44919ff22a555df2c7a4a2348 278 PANTHER PTHR30188 9 278 2.3E-130 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_0603 f78b97d44919ff22a555df2c7a4a2348 278 PANTHER PTHR30188:SF1 9 278 2.3E-130 T 19-04-2016 AMED_0603 f78b97d44919ff22a555df2c7a4a2348 278 Pfam PF02405 Permease MlaE 61 263 1.9E-58 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.30.1540.10 375 458 3.6E-25 T 19-04-2016 AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 SUPERFAMILY SSF54427 1 136 3.84E-20 T 19-04-2016 IPR032710 NTF2-like domain AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 PANTHER PTHR24023 225 537 1.2E-32 T 19-04-2016 AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 Pfam PF02515 CoA-transferase family III 158 526 1.5E-119 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 Pfam PF13577 SnoaL-like domain 1 115 3.3E-14 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.40.50.10540 459 550 6.7E-100 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.40.50.10540 154 369 6.7E-100 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 PANTHER PTHR24023:SF593 225 537 1.2E-32 T 19-04-2016 AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 SUPERFAMILY SSF89796 156 550 3.79E-125 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7135 ccbb4c2031a530743390f7028eaeeaa0 550 Gene3D G3DSA:3.10.450.50 1 118 1.4E-11 T 19-04-2016 IPR032710 NTF2-like domain AMED_1241 e662974ae4a1e802be6750fe5c58c60e 348 Gene3D G3DSA:3.40.50.720 122 339 9.3E-12 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1241 e662974ae4a1e802be6750fe5c58c60e 348 SUPERFAMILY SSF69572 117 338 6.93E-15 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_1241 e662974ae4a1e802be6750fe5c58c60e 348 Pfam PF00899 ThiF family 122 339 3.2E-10 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMED_9280 df595f27cf1f8217cd1123a5cf93f4da 152 Gene3D G3DSA:1.10.10.10 6 135 5.3E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9280 df595f27cf1f8217cd1123a5cf93f4da 152 SUPERFAMILY SSF46785 7 142 1.51E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9280 df595f27cf1f8217cd1123a5cf93f4da 152 Pfam PF01047 MarR family 32 90 9.1E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9280 df595f27cf1f8217cd1123a5cf93f4da 152 PANTHER PTHR39515 1 152 9.3E-25 T 19-04-2016 AMED_9280 df595f27cf1f8217cd1123a5cf93f4da 152 SMART SM00347 25 125 4.1E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7371 ed57a45508fc9cdc0f1fb12a96872f3e 285 PANTHER PTHR37981:SF3 32 185 3.4E-19 T 19-04-2016 AMED_7371 ed57a45508fc9cdc0f1fb12a96872f3e 285 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 271 1.3E-20 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7371 ed57a45508fc9cdc0f1fb12a96872f3e 285 PANTHER PTHR37981 32 185 3.4E-19 T 19-04-2016 AMED_7371 ed57a45508fc9cdc0f1fb12a96872f3e 285 SUPERFAMILY SSF52266 31 280 4.66E-52 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7371 ed57a45508fc9cdc0f1fb12a96872f3e 285 Gene3D G3DSA:3.40.50.1110 31 280 2.2E-59 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 PANTHER PTHR24220 10 240 3.7E-106 T 19-04-2016 AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 SMART SM00382 37 234 5.6E-15 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 PANTHER PTHR24220:SF484 10 240 3.7E-106 T 19-04-2016 AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 SUPERFAMILY SSF52540 9 227 1.11E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 Pfam PF00005 ABC transporter 28 174 7.6E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_1388 05172737d0e07f880e26fe9d580c5ab4 246 Gene3D G3DSA:3.40.50.300 8 227 7.5E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 Gene3D G3DSA:3.30.420.40 92 256 3.3E-45 T 19-04-2016 AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 251 9.2E-71 T 19-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 256 32.209 T 19-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 PANTHER PTHR34265 2 257 1.2E-62 T 19-04-2016 AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 Pfam PF03309 Type III pantothenate kinase 2 204 1.2E-60 T 19-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 SUPERFAMILY SSF53067 122 255 1.42E-31 T 19-04-2016 AMED_8736 30b6316fabea93fa8a3fe3cf8adc7925 258 SUPERFAMILY SSF53067 2 119 2.23E-27 T 19-04-2016 AMED_1488 cc87e41e9bbbb5f774918123207ebb79 373 SUPERFAMILY SSF53067 3 157 3.14E-16 T 19-04-2016 AMED_1488 cc87e41e9bbbb5f774918123207ebb79 373 Gene3D G3DSA:3.30.420.40 3 159 9.9E-13 T 19-04-2016 AMED_0610 75b672999624637e6d40142c385f3ec2 191 PANTHER PTHR37042 2 185 9.8E-15 T 19-04-2016 AMED_0610 75b672999624637e6d40142c385f3ec2 191 PANTHER PTHR37042:SF2 2 185 9.8E-15 T 19-04-2016 AMED_2021 747ddee1de734a38dcdbf0097bc7089d 204 SUPERFAMILY SSF46689 8 86 2.05E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2021 747ddee1de734a38dcdbf0097bc7089d 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 59 2.3E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2021 747ddee1de734a38dcdbf0097bc7089d 204 Gene3D G3DSA:1.10.357.10 8 195 1.5E-18 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 Pfam PF00871 Acetokinase family 50 354 1.2E-82 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 171 192 2.2E-20 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 290 306 2.2E-20 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 6 17 2.2E-20 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 342 354 2.2E-20 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PRINTS PR00471 Acetate kinase family signature 268 281 2.2E-20 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PIRSF PIRSF000722 36 361 7.9E-94 T 19-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PANTHER PTHR21060:SF11 52 354 2.3E-100 T 19-04-2016 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 Gene3D G3DSA:3.30.420.40 173 356 5.0E-55 T 19-04-2016 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 Gene3D G3DSA:3.30.420.40 4 172 5.2E-23 T 19-04-2016 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 SUPERFAMILY SSF53067 124 358 1.68E-63 T 19-04-2016 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 SUPERFAMILY SSF53067 4 163 4.75E-38 T 19-04-2016 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 Hamap MF_00020 Acetate kinase [ackA]. 1 361 107.561 T 19-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_6574 b2ded4967b8bbd90434962d78e93d92d 361 PANTHER PTHR21060 52 354 2.3E-100 T 19-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 AMED_3095 c882d4e1b0c0eadd006160d3f71f32be 139 SUPERFAMILY SSF54427 1 134 5.08E-26 T 19-04-2016 IPR032710 NTF2-like domain AMED_3095 c882d4e1b0c0eadd006160d3f71f32be 139 Pfam PF12680 SnoaL-like domain 15 117 5.1E-19 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3095 c882d4e1b0c0eadd006160d3f71f32be 139 Gene3D G3DSA:3.10.450.50 6 134 4.8E-22 T 19-04-2016 IPR032710 NTF2-like domain AMED_1972 fc7b535a85155a6617b3bfaedd205aec 211 Gene3D G3DSA:2.70.70.10 66 195 6.4E-27 T 19-04-2016 AMED_1972 fc7b535a85155a6617b3bfaedd205aec 211 PANTHER PTHR21666 73 196 3.0E-15 T 19-04-2016 AMED_1972 fc7b535a85155a6617b3bfaedd205aec 211 PANTHER PTHR21666:SF190 73 196 3.0E-15 T 19-04-2016 AMED_1972 fc7b535a85155a6617b3bfaedd205aec 211 SUPERFAMILY SSF51261 47 193 1.67E-18 T 19-04-2016 IPR011055 Duplicated hybrid motif AMED_1972 fc7b535a85155a6617b3bfaedd205aec 211 Pfam PF01551 Peptidase family M23 98 192 1.6E-16 T 19-04-2016 IPR016047 Peptidase M23 AMED_7343 83d8e5dfba491d2af111c373464aaeaa 191 SUPERFAMILY SSF53597 2 185 1.57E-25 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7343 83d8e5dfba491d2af111c373464aaeaa 191 PANTHER PTHR38011:SF2 2 188 1.3E-48 T 19-04-2016 AMED_7343 83d8e5dfba491d2af111c373464aaeaa 191 PANTHER PTHR38011 2 188 1.3E-48 T 19-04-2016 AMED_7343 83d8e5dfba491d2af111c373464aaeaa 191 Gene3D G3DSA:3.40.430.10 3 184 5.3E-25 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_7343 83d8e5dfba491d2af111c373464aaeaa 191 Pfam PF01872 RibD C-terminal domain 2 179 1.0E-22 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_2900 739c546f8d71ec886859ae1d2519b0a5 148 Pfam PF08279 HTH domain 14 69 3.3E-15 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_2900 739c546f8d71ec886859ae1d2519b0a5 148 PANTHER PTHR30363 8 94 4.1E-29 T 19-04-2016 AMED_2900 739c546f8d71ec886859ae1d2519b0a5 148 PANTHER PTHR30363:SF20 8 94 4.1E-29 T 19-04-2016 AMED_2900 739c546f8d71ec886859ae1d2519b0a5 148 Gene3D G3DSA:1.10.10.10 7 72 9.0E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2900 739c546f8d71ec886859ae1d2519b0a5 148 SUPERFAMILY SSF46785 11 70 1.84E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4362 78d1b49e02db1120696876abe0282e1d 433 Gene3D G3DSA:3.40.190.10 172 360 8.5E-42 T 19-04-2016 AMED_4362 78d1b49e02db1120696876abe0282e1d 433 PANTHER PTHR30061:SF24 1 431 3.3E-75 T 19-04-2016 AMED_4362 78d1b49e02db1120696876abe0282e1d 433 Gene3D G3DSA:3.40.190.10 43 171 2.5E-22 T 19-04-2016 AMED_4362 78d1b49e02db1120696876abe0282e1d 433 PANTHER PTHR30061 1 431 3.3E-75 T 19-04-2016 AMED_4362 78d1b49e02db1120696876abe0282e1d 433 Pfam PF01547 Bacterial extracellular solute-binding protein 54 348 3.0E-46 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_4362 78d1b49e02db1120696876abe0282e1d 433 SUPERFAMILY SSF53850 19 431 6.62E-77 T 19-04-2016 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 SUPERFAMILY SSF48498 82 186 2.33E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1693 2a9a505466bdd80770710c540202f4e8 187 SUPERFAMILY SSF46689 5 84 2.74E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 61 2.0E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 PANTHER PTHR30055:SF19 1 185 1.3E-40 T 19-04-2016 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.0E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 PANTHER PTHR30055 1 185 1.3E-40 T 19-04-2016 AMED_1693 2a9a505466bdd80770710c540202f4e8 187 Gene3D G3DSA:1.10.357.10 6 186 5.6E-41 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1740 8e50ff6fcb6941290a594a3788eb4800 218 Gene3D G3DSA:2.30.110.10 2 185 8.9E-63 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1740 8e50ff6fcb6941290a594a3788eb4800 218 SUPERFAMILY SSF50475 2 185 4.42E-51 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1740 8e50ff6fcb6941290a594a3788eb4800 218 PANTHER PTHR34071:SF2 1 194 5.5E-47 T 19-04-2016 AMED_1740 8e50ff6fcb6941290a594a3788eb4800 218 PANTHER PTHR34071 1 194 5.5E-47 T 19-04-2016 AMED_1740 8e50ff6fcb6941290a594a3788eb4800 218 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 20 162 1.4E-38 T 19-04-2016 IPR024747 Pyridoxamine 5'-phosphate oxidase-related AMED_1097 faa9d00c99a9f14ee72969338b51f6a3 167 SUPERFAMILY SSF54637 2 151 1.64E-44 T 19-04-2016 IPR029069 HotDog domain AMED_1097 faa9d00c99a9f14ee72969338b51f6a3 167 PANTHER PTHR13078 2 164 5.9E-66 T 19-04-2016 AMED_1097 faa9d00c99a9f14ee72969338b51f6a3 167 Gene3D G3DSA:3.10.129.10 2 150 4.3E-42 T 19-04-2016 IPR029069 HotDog domain AMED_1097 faa9d00c99a9f14ee72969338b51f6a3 167 Pfam PF01575 MaoC like domain 12 118 8.2E-16 T 19-04-2016 IPR002539 MaoC-like domain AMED_8472 b3c19aa75c9f16398880d66c406bf7b3 203 Pfam PF10801 Protein of unknown function (DUF2537) 120 200 2.4E-25 T 19-04-2016 IPR024244 Protein of unknown function DUF2537 AMED_7393 b7592a130b10aa9a1e0c9f0edd095786 321 Gene3D G3DSA:3.20.20.370 5 152 2.0E-34 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_7393 b7592a130b10aa9a1e0c9f0edd095786 321 Gene3D G3DSA:3.20.20.370 187 262 2.0E-34 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_7393 b7592a130b10aa9a1e0c9f0edd095786 321 Pfam PF01522 Polysaccharide deacetylase 36 145 1.1E-18 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_7393 b7592a130b10aa9a1e0c9f0edd095786 321 SUPERFAMILY SSF88713 189 212 2.31E-26 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_7393 b7592a130b10aa9a1e0c9f0edd095786 321 SUPERFAMILY SSF88713 36 156 2.31E-26 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_7393 b7592a130b10aa9a1e0c9f0edd095786 321 PANTHER PTHR10587 39 152 7.3E-23 T 19-04-2016 AMED_6168 00152ca679d0d12472f473a451f2a406 126 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 17 109 7.7E-23 T 19-04-2016 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 PANTHER PTHR12143:SF22 7 251 5.2E-130 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 PANTHER PTHR12143:SF22 272 804 5.2E-130 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 SUPERFAMILY SSF48208 311 746 1.87E-20 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 Pfam PF07971 Glycosyl hydrolase family 92 286 762 4.6E-154 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:1.20.1050.60 392 482 8.3E-23 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:1.20.1610.10 490 625 9.7E-44 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 PANTHER PTHR12143 7 251 5.2E-130 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 PANTHER PTHR12143 272 804 5.2E-130 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:2.70.98.10 28 367 8.3E-98 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 Gene3D G3DSA:3.30.2080.10 626 774 6.6E-52 T 19-04-2016 AMED_0978 124b06f90ca3f8e5c32369539901f763 1086 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 14 765 8.8E-149 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_7184 443ec32812950e5f2f233d2b98145522 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 169 279 1.5E-9 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_7184 443ec32812950e5f2f233d2b98145522 331 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 105 4.6E-8 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_7184 443ec32812950e5f2f233d2b98145522 331 SUPERFAMILY SSF54593 12 285 4.28E-32 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7184 443ec32812950e5f2f233d2b98145522 331 Gene3D G3DSA:3.10.180.10 10 160 2.1E-28 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7184 443ec32812950e5f2f233d2b98145522 331 PANTHER PTHR21366 200 309 7.0E-29 T 19-04-2016 AMED_7184 443ec32812950e5f2f233d2b98145522 331 PANTHER PTHR21366 22 82 7.0E-29 T 19-04-2016 AMED_7184 443ec32812950e5f2f233d2b98145522 331 Gene3D G3DSA:3.10.180.10 161 300 4.2E-38 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7184 443ec32812950e5f2f233d2b98145522 331 PANTHER PTHR21366:SF10 200 309 7.0E-29 T 19-04-2016 AMED_7184 443ec32812950e5f2f233d2b98145522 331 PANTHER PTHR21366:SF10 22 82 7.0E-29 T 19-04-2016 AMED_1716 a6b3e118094b55bd621f4707beae35f4 186 Pfam PF13558 Putative exonuclease SbcCD, C subunit 74 143 5.1E-15 T 19-04-2016 AMED_1716 a6b3e118094b55bd621f4707beae35f4 186 PANTHER PTHR32114 1 186 1.0E-40 T 19-04-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 AMED_1716 a6b3e118094b55bd621f4707beae35f4 186 PANTHER PTHR32114:SF2 1 186 1.0E-40 T 19-04-2016 AMED_1716 a6b3e118094b55bd621f4707beae35f4 186 SUPERFAMILY SSF52540 45 181 4.43E-20 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1716 a6b3e118094b55bd621f4707beae35f4 186 Gene3D G3DSA:3.40.50.300 67 182 8.5E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4899 86ce5ff1abbd282013f925bece8332d0 311 PANTHER PTHR11732 1 311 7.5E-80 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_4899 86ce5ff1abbd282013f925bece8332d0 311 Pfam PF00248 Aldo/keto reductase family 37 294 5.1E-21 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4899 86ce5ff1abbd282013f925bece8332d0 311 PANTHER PTHR11732:SF2 1 311 7.5E-80 T 19-04-2016 AMED_4899 86ce5ff1abbd282013f925bece8332d0 311 Gene3D G3DSA:3.20.20.100 3 296 8.6E-32 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_4899 86ce5ff1abbd282013f925bece8332d0 311 SUPERFAMILY SSF51430 33 295 2.62E-33 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 Gene3D G3DSA:1.10.10.10 5 87 1.9E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PANTHER PTHR39168:SF1 152 246 2.1E-43 T 19-04-2016 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PANTHER PTHR39168 152 246 2.1E-43 T 19-04-2016 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 Pfam PF12840 Helix-turn-helix domain 10 68 3.1E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PANTHER PTHR39168 2 135 2.1E-43 T 19-04-2016 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 SUPERFAMILY SSF46785 6 87 3.46E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 2.0E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 2.0E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 2.0E-9 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 SMART SM00418 12 88 1.4E-19 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2962 05b28b8ce42817050d3ba16f2f25acac 248 PANTHER PTHR39168:SF1 2 135 2.1E-43 T 19-04-2016 AMED_1561 9434ff6b009196abfc645496c805eb91 425 Gene3D G3DSA:3.30.300.30 319 423 1.8E-32 T 19-04-2016 AMED_1561 9434ff6b009196abfc645496c805eb91 425 PANTHER PTHR24095:SF175 52 423 8.1E-192 T 19-04-2016 AMED_1561 9434ff6b009196abfc645496c805eb91 425 PANTHER PTHR24095 52 423 8.1E-192 T 19-04-2016 AMED_1561 9434ff6b009196abfc645496c805eb91 425 Pfam PF00501 AMP-binding enzyme 50 282 5.8E-13 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_1561 9434ff6b009196abfc645496c805eb91 425 Pfam PF14535 AMP-binding enzyme C-terminal domain 329 422 9.8E-24 T 19-04-2016 IPR028154 AMP-dependent ligase, C-terminal AMED_1561 9434ff6b009196abfc645496c805eb91 425 SUPERFAMILY SSF56801 13 379 4.19E-58 T 19-04-2016 AMED_1561 9434ff6b009196abfc645496c805eb91 425 Gene3D G3DSA:3.40.50.980 83 241 9.2E-12 T 19-04-2016 AMED_1561 9434ff6b009196abfc645496c805eb91 425 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 7 422 2.5E-208 T 19-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 AMED_1561 9434ff6b009196abfc645496c805eb91 425 PIRSF PIRSF006444 2 424 4.0E-200 T 19-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 AMED_7221 89937d71aec2f454391fcba4d5a7f5a0 58 SUPERFAMILY SSF52096 2 49 1.84E-5 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7221 89937d71aec2f454391fcba4d5a7f5a0 58 Gene3D G3DSA:1.10.12.10 1 47 2.3E-11 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_8678 d953c54b23eb6c8ecf5cc398a19e97ee 163 SMART SM01058 2 112 2.0E-33 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMED_8678 d953c54b23eb6c8ecf5cc398a19e97ee 163 SUPERFAMILY SSF141259 3 66 3.4E-14 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMED_8678 d953c54b23eb6c8ecf5cc398a19e97ee 163 Pfam PF02559 CarD-like/TRCF domain 3 110 5.8E-16 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMED_8678 d953c54b23eb6c8ecf5cc398a19e97ee 163 PANTHER PTHR38447 1 158 1.6E-66 T 19-04-2016 AMED_0886 ab946045240e61d76780afc9ee82f1f2 303 SUPERFAMILY SSF141571 186 298 2.35E-5 T 19-04-2016 AMED_0886 ab946045240e61d76780afc9ee82f1f2 303 Pfam PF00805 Pentapeptide repeats (8 copies) 186 214 0.0021 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_2064 34ac9cf9ef36e24e5af39001c448d3ec 300 SUPERFAMILY SSF56059 131 298 5.46E-14 T 19-04-2016 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 85 289 1.2E-19 T 19-04-2016 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003918|GO:0006265 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 Gene3D G3DSA:1.20.120.380 237 311 7.0E-24 T 19-04-2016 IPR027362 DNA topoisomerase I catalytic fragment, domain 2 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 Gene3D G3DSA:3.90.15.10 90 216 7.1E-26 T 19-04-2016 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 125 144 5.7E-7 T 19-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 148 162 5.7E-7 T 19-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 286 297 5.7E-7 T 19-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 235 249 5.7E-7 T 19-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 SUPERFAMILY SSF55869 25 86 1.31E-21 T 19-04-2016 AMED_4291 7a8ca37177d4669e2eab6e51de9f98d3 337 SUPERFAMILY SSF56349 81 313 1.5E-54 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6202 e60cfaa5b6768d16b2fc051ec615d5c3 200 ProSitePatterns PS00211 ABC transporters family signature. 94 108 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_6202 e60cfaa5b6768d16b2fc051ec615d5c3 200 PANTHER PTHR24220:SF585 7 198 1.7E-76 T 19-04-2016 AMED_6202 e60cfaa5b6768d16b2fc051ec615d5c3 200 Gene3D G3DSA:3.40.50.300 7 193 5.5E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6202 e60cfaa5b6768d16b2fc051ec615d5c3 200 SUPERFAMILY SSF52540 7 193 1.49E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6202 e60cfaa5b6768d16b2fc051ec615d5c3 200 Pfam PF00005 ABC transporter 8 121 1.2E-17 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6202 e60cfaa5b6768d16b2fc051ec615d5c3 200 PANTHER PTHR24220 7 198 1.7E-76 T 19-04-2016 AMED_2346 59e4ea3b7840cd25e2f7e07b32bbc862 420 PANTHER PTHR23530:SF1 8 412 8.3E-38 T 19-04-2016 AMED_2346 59e4ea3b7840cd25e2f7e07b32bbc862 420 Gene3D G3DSA:1.20.1250.20 220 409 5.8E-6 T 19-04-2016 AMED_2346 59e4ea3b7840cd25e2f7e07b32bbc862 420 PANTHER PTHR23530 8 412 8.3E-38 T 19-04-2016 AMED_2346 59e4ea3b7840cd25e2f7e07b32bbc862 420 Gene3D G3DSA:1.20.1250.20 20 191 2.1E-11 T 19-04-2016 AMED_2346 59e4ea3b7840cd25e2f7e07b32bbc862 420 SUPERFAMILY SSF103473 20 402 9.29E-31 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4094 0476937e151945478aba68f29a5c1763 186 Gene3D G3DSA:1.20.120.450 11 58 4.1E-5 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_4094 0476937e151945478aba68f29a5c1763 186 SUPERFAMILY SSF109854 3 130 3.2E-12 T 19-04-2016 AMED_4094 0476937e151945478aba68f29a5c1763 186 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 12 179 8.1E-17 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_4094 0476937e151945478aba68f29a5c1763 186 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 13 124 7.2E-7 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 Pfam PF01965 DJ-1/PfpI family 70 170 1.8E-9 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 SUPERFAMILY SSF46689 214 261 3.72E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 Pfam PF12833 Helix-turn-helix domain 234 311 4.9E-16 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 Gene3D G3DSA:3.40.50.880 1 191 1.8E-40 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 SUPERFAMILY SSF52317 1 192 2.93E-40 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 PANTHER PTHR11019 6 318 1.8E-95 T 19-04-2016 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 Gene3D G3DSA:1.10.10.60 266 313 3.6E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 SMART SM00342 227 310 3.5E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 PANTHER PTHR11019:SF68 6 318 1.8E-95 T 19-04-2016 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 SUPERFAMILY SSF46689 264 314 1.39E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7759 eaef0c025c6982b9eb6a7e8b21dc4160 327 Gene3D G3DSA:1.10.10.60 208 265 7.4E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1374 4e27b91b7c00633a18de4ebb139b6287 206 SUPERFAMILY SSF53474 8 146 6.73E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1374 4e27b91b7c00633a18de4ebb139b6287 206 Pfam PF00975 Thioesterase domain 12 118 3.0E-11 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_1374 4e27b91b7c00633a18de4ebb139b6287 206 PANTHER PTHR11487 12 131 1.2E-20 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_1374 4e27b91b7c00633a18de4ebb139b6287 206 Gene3D G3DSA:3.40.50.1820 8 114 2.3E-9 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7053 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 PANTHER PTHR30069 13 204 2.2E-49 T 19-04-2016 AMED_7053 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 19 204 6.1E-74 T 19-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_7053 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 SUPERFAMILY SSF52540 12 204 2.26E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7053 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 Gene3D G3DSA:3.40.50.300 10 204 2.3E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7053 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 PIRSF PIRSF015617 1 204 6.8E-63 T 19-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_7053 d79a4ca9d0ea8e805f10fb2e6bd5169e 204 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 22 204 5.3E-57 T 19-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 Pfam PF01494 FAD binding domain 5 358 5.3E-96 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 1.8E-43 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 1.8E-43 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 344 1.8E-43 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 360 1.8E-43 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.8E-43 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 324 1.8E-43 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 SUPERFAMILY SSF51905 289 373 9.21E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 SUPERFAMILY SSF51905 3 185 9.21E-58 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PANTHER PTHR13789:SF90 3 367 5.6E-66 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 PANTHER PTHR13789 3 367 5.6E-66 T 19-04-2016 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 Gene3D G3DSA:3.50.50.60 4 70 7.8E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 Gene3D G3DSA:3.50.50.60 281 362 7.8E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7930 e99c36ef810e4196f88c2756ddb889e1 516 Gene3D G3DSA:3.50.50.60 106 190 7.8E-56 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5232 2055fc2ea5e4a9e437cbd0887352e716 180 Gene3D G3DSA:3.40.630.30 5 170 2.1E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5232 2055fc2ea5e4a9e437cbd0887352e716 180 PANTHER PTHR13256 4 170 1.3E-23 T 19-04-2016 AMED_5232 2055fc2ea5e4a9e437cbd0887352e716 180 SUPERFAMILY SSF55729 1 171 1.29E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5232 2055fc2ea5e4a9e437cbd0887352e716 180 Pfam PF13302 Acetyltransferase (GNAT) domain 9 142 1.5E-16 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_5232 2055fc2ea5e4a9e437cbd0887352e716 180 PANTHER PTHR13256:SF21 4 170 1.3E-23 T 19-04-2016 AMED_8795 b0a8f39615154e3198a4af97cd33faad 268 Gene3D G3DSA:2.40.10.10 169 214 2.9E-5 T 19-04-2016 AMED_8795 b0a8f39615154e3198a4af97cd33faad 268 Pfam PF13365 Trypsin-like peptidase domain 40 206 7.8E-10 T 19-04-2016 AMED_8795 b0a8f39615154e3198a4af97cd33faad 268 SUPERFAMILY SSF50494 14 220 1.76E-14 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 SUPERFAMILY SSF55681 10 319 2.79E-64 T 19-04-2016 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 SUPERFAMILY SSF52954 334 427 4.68E-19 T 19-04-2016 IPR004154 Anticodon-binding AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 10 416 2.2E-101 T 19-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 Pfam PF03129 Anticodon binding domain 337 426 7.0E-16 T 19-04-2016 IPR004154 Anticodon-binding AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 Pfam PF13393 Histidyl-tRNA synthetase 12 314 9.3E-43 T 19-04-2016 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 5 426 24.375 T 19-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 Gene3D G3DSA:3.40.50.800 333 424 1.5E-21 T 19-04-2016 IPR004154 Anticodon-binding AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 PANTHER PTHR11476 7 429 2.2E-124 T 19-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 PIRSF PIRSF001549 5 428 6.2E-107 T 19-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 Gene3D G3DSA:3.30.930.10 224 328 1.7E-70 T 19-04-2016 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 Gene3D G3DSA:3.30.930.10 10 187 1.7E-70 T 19-04-2016 AMED_0899 e5cdb905099aa5b1d0befd51c57a4058 429 PANTHER PTHR11476:SF5 7 429 2.2E-124 T 19-04-2016 AMED_6330 63fcb1b7ec7bb18fe13b8c0330698762 383 PANTHER PTHR13806:SF20 1 293 4.2E-33 T 19-04-2016 AMED_6330 63fcb1b7ec7bb18fe13b8c0330698762 383 SUPERFAMILY SSF117892 37 177 1.29E-22 T 19-04-2016 IPR001107 Band 7 domain AMED_6330 63fcb1b7ec7bb18fe13b8c0330698762 383 PANTHER PTHR13806 1 293 4.2E-33 T 19-04-2016 IPR027705 Flotillin family AMED_6330 63fcb1b7ec7bb18fe13b8c0330698762 383 Pfam PF01145 SPFH domain / Band 7 family 9 185 2.3E-9 T 19-04-2016 IPR001107 Band 7 domain AMED_4058 c567597e017ad66d5892697ae0a607a3 448 Gene3D G3DSA:3.40.50.1820 57 166 1.7E-12 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4058 c567597e017ad66d5892697ae0a607a3 448 Gene3D G3DSA:3.40.50.1820 303 399 1.7E-12 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4058 c567597e017ad66d5892697ae0a607a3 448 SUPERFAMILY SSF53474 336 403 3.87E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4058 c567597e017ad66d5892697ae0a607a3 448 SUPERFAMILY SSF53474 54 160 3.87E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0502 20a23b1d78fb2e3920f714b6fe968572 70 Pfam PF12728 Helix-turn-helix domain 9 58 1.9E-11 T 19-04-2016 AMED_0502 20a23b1d78fb2e3920f714b6fe968572 70 Gene3D G3DSA:1.10.1660.10 10 55 4.0E-6 T 19-04-2016 AMED_0502 20a23b1d78fb2e3920f714b6fe968572 70 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 9 57 1.1E-11 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_0502 20a23b1d78fb2e3920f714b6fe968572 70 SUPERFAMILY SSF46955 8 59 2.52E-11 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 PANTHER PTHR11986 1 419 1.3E-173 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 Pfam PF00202 Aminotransferase class-III 26 419 4.0E-114 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 Gene3D G3DSA:3.90.1150.10 4 62 9.4E-48 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 Gene3D G3DSA:3.90.1150.10 334 424 9.4E-48 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 Gene3D G3DSA:3.40.640.10 63 329 1.4E-82 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 SUPERFAMILY SSF53383 5 423 1.88E-115 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 PANTHER PTHR11986:SF8 1 419 1.3E-173 T 19-04-2016 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMED_2214 e79dbf9eda7010a5d04155af488f3b0c 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 422 1.1E-160 T 19-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 AMED_0599 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 SUPERFAMILY SSF160369 1 168 1.28E-48 T 19-04-2016 AMED_0599 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 24.349 T 19-04-2016 IPR022973 Ribosomal protein L10 AMED_0599 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 PANTHER PTHR11560 1 181 5.0E-51 T 19-04-2016 AMED_0599 769c5f1eb9bfdc0b8a636e00ac07a1d5 184 Pfam PF00466 Ribosomal protein L10 1 98 6.9E-26 T 19-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMED_3253 025f252a36b29d02257dac900c34c3f3 336 PANTHER PTHR21716 24 328 9.0E-42 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_3253 025f252a36b29d02257dac900c34c3f3 336 Pfam PF01594 Domain of unknown function DUF20 27 325 5.6E-45 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_7329 e9d1486e0953a5c087afecff13960900 104 Pfam PF12840 Helix-turn-helix domain 18 79 5.3E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7329 e9d1486e0953a5c087afecff13960900 104 SUPERFAMILY SSF46785 4 98 1.68E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7329 e9d1486e0953a5c087afecff13960900 104 PANTHER PTHR33154 2 103 2.6E-23 T 19-04-2016 AMED_7329 e9d1486e0953a5c087afecff13960900 104 SMART SM00418 17 99 3.1E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7329 e9d1486e0953a5c087afecff13960900 104 PANTHER PTHR33154:SF2 2 103 2.6E-23 T 19-04-2016 AMED_7329 e9d1486e0953a5c087afecff13960900 104 Gene3D G3DSA:1.10.10.10 14 97 5.5E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7329 e9d1486e0953a5c087afecff13960900 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 1.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7329 e9d1486e0953a5c087afecff13960900 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 1.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_7329 e9d1486e0953a5c087afecff13960900 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 1.8E-7 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_8820 6e349c37eca1a9679cebb2dda38aff3f 242 Pfam PF01988 VIT family 27 234 2.7E-56 T 19-04-2016 IPR008217 Ccc1 family AMED_8820 6e349c37eca1a9679cebb2dda38aff3f 242 PANTHER PTHR31851 26 242 6.7E-64 T 19-04-2016 AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 3 105 3.4E-32 T 19-04-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 Gene3D G3DSA:2.60.40.180 3 105 2.4E-33 T 19-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 PANTHER PTHR10395 2 105 7.9E-39 T 19-04-2016 AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 19-04-2016 IPR023418 Transthyretin, thyroxine binding site AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 PANTHER PTHR10395:SF7 2 105 7.9E-39 T 19-04-2016 AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 Pfam PF00576 HIUase/Transthyretin family 4 104 4.7E-32 T 19-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 PRINTS PR00189 Transthyretin signature 83 105 4.6E-8 T 19-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 PRINTS PR00189 Transthyretin signature 3 23 4.6E-8 T 19-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase AMED_1927 592dbf3f58142230c7fc9169f591dec5 105 SUPERFAMILY SSF49472 2 105 8.24E-34 T 19-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Gene3D G3DSA:3.40.50.10490 442 607 2.0E-51 T 19-04-2016 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Gene3D G3DSA:3.60.20.10 2 239 5.9E-72 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 607 36.2 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Pfam PF13522 Glutamine amidotransferase domain 64 192 7.5E-27 T 19-04-2016 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Gene3D G3DSA:3.40.50.10490 243 441 3.9E-52 T 19-04-2016 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 PANTHER PTHR10937 1 607 2.5E-270 T 19-04-2016 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 SUPERFAMILY SSF53697 244 607 6.96E-93 T 19-04-2016 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Pfam PF01380 SIS domain 295 410 1.5E-22 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 Pfam PF01380 SIS domain 462 589 3.6E-19 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 607 3.8E-213 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 PANTHER PTHR10937:SF0 1 607 2.5E-270 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMED_7433 30623919cfd2739d9d72f394cb7f094d 607 SUPERFAMILY SSF56235 2 227 3.86E-67 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMED_6516 1cc268878c69ea66c5ba7b939c7275b1 316 Pfam PF07859 alpha/beta hydrolase fold 87 292 1.9E-62 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_6516 1cc268878c69ea66c5ba7b939c7275b1 316 PANTHER PTHR23024:SF24 57 306 2.4E-68 T 19-04-2016 AMED_6516 1cc268878c69ea66c5ba7b939c7275b1 316 SUPERFAMILY SSF53474 9 304 5.05E-63 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6516 1cc268878c69ea66c5ba7b939c7275b1 316 PANTHER PTHR23024 57 306 2.4E-68 T 19-04-2016 AMED_6516 1cc268878c69ea66c5ba7b939c7275b1 316 Gene3D G3DSA:3.40.50.1820 17 307 1.5E-80 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 SUPERFAMILY SSF52540 15 187 6.82E-21 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 PANTHER PTHR11711:SF117 17 194 5.1E-47 T 19-04-2016 AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 Pfam PF03029 Conserved hypothetical ATP binding protein 21 160 2.6E-21 T 19-04-2016 IPR004130 GPN-loop GTPase AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 Gene3D G3DSA:3.40.50.300 15 191 1.8E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 PRINTS PR00449 Transforming protein P21 ras signature 75 97 7.2E-5 T 19-04-2016 AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 PRINTS PR00449 Transforming protein P21 ras signature 17 38 7.2E-5 T 19-04-2016 AMED_8921 fa1f9439ad1ecdf37147106b3783c0a2 199 PANTHER PTHR11711 17 194 5.1E-47 T 19-04-2016 AMED_0691 92da0101386421ea361620067cad5c83 132 PANTHER PTHR11758 1 132 1.2E-53 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMED_0691 92da0101386421ea361620067cad5c83 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.984 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMED_0691 92da0101386421ea361620067cad5c83 132 Pfam PF00410 Ribosomal protein S8 5 132 4.9E-49 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMED_0691 92da0101386421ea361620067cad5c83 132 PANTHER PTHR11758:SF17 1 132 1.2E-53 T 19-04-2016 AMED_0691 92da0101386421ea361620067cad5c83 132 SUPERFAMILY SSF56047 3 132 4.06E-43 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMED_0691 92da0101386421ea361620067cad5c83 132 Gene3D G3DSA:3.30.1370.30 2 72 2.5E-28 T 19-04-2016 AMED_0691 92da0101386421ea361620067cad5c83 132 Gene3D G3DSA:3.30.1490.10 76 132 2.3E-26 T 19-04-2016 AMED_5597 988522b46413bb091362f47f5e8d26f8 172 PANTHER PTHR21240 1 120 1.0E-29 T 19-04-2016 AMED_5597 988522b46413bb091362f47f5e8d26f8 172 SUPERFAMILY SSF51556 2 167 1.05E-33 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_5597 988522b46413bb091362f47f5e8d26f8 172 Pfam PF04909 Amidohydrolase 2 118 1.9E-15 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_5597 988522b46413bb091362f47f5e8d26f8 172 Gene3D G3DSA:3.20.20.140 121 166 1.1E-6 T 19-04-2016 AMED_5597 988522b46413bb091362f47f5e8d26f8 172 PANTHER PTHR21240:SF15 1 120 1.0E-29 T 19-04-2016 AMED_5597 988522b46413bb091362f47f5e8d26f8 172 Gene3D G3DSA:3.20.20.140 1 120 2.5E-29 T 19-04-2016 AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 PANTHER PTHR24031 40 518 1.3E-186 T 19-04-2016 AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 SMART SM00490 297 378 1.1E-30 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 SUPERFAMILY SSF52540 115 398 6.08E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 SMART SM00487 63 263 2.6E-53 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 Gene3D G3DSA:3.40.50.300 253 405 1.8E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 Gene3D G3DSA:3.40.50.300 43 252 3.5E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 Pfam PF00270 DEAD/DEAH box helicase 68 236 4.5E-44 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 PANTHER PTHR24031:SF334 40 518 1.3E-186 T 19-04-2016 AMED_2058 b83ce3496cf4e19553e2ce04de900b71 534 Pfam PF00271 Helicase conserved C-terminal domain 280 378 5.5E-24 T 19-04-2016 IPR001650 Helicase, C-terminal AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 SUPERFAMILY SSF55347 140 308 2.29E-20 T 19-04-2016 AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 20 130 6.3E-22 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 PANTHER PTHR22604 21 342 1.4E-57 T 19-04-2016 AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 Gene3D G3DSA:3.40.50.720 15 148 6.5E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 SUPERFAMILY SSF51735 18 165 1.3E-37 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 162 212 1.7E-5 T 19-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AMED_0613 9a41ce7690e09d87a7045cc56fd915d4 342 Gene3D G3DSA:3.30.360.10 149 337 3.4E-35 T 19-04-2016 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 PANTHER PTHR11271 364 498 8.8E-24 T 19-04-2016 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 Pfam PF01979 Amidohydrolase family 358 470 1.3E-12 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 Gene3D G3DSA:2.30.40.10 419 444 1.8E-7 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 PANTHER PTHR11271:SF42 364 498 8.8E-24 T 19-04-2016 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 Gene3D G3DSA:3.20.20.140 116 247 3.0E-42 T 19-04-2016 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 Gene3D G3DSA:3.20.20.140 295 418 3.0E-42 T 19-04-2016 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 SUPERFAMILY SSF51556 98 247 1.7E-44 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 SUPERFAMILY SSF51556 296 435 1.7E-44 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 PANTHER PTHR11271 5 276 8.8E-24 T 19-04-2016 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 Gene3D G3DSA:2.30.40.10 42 100 2.1E-23 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 Gene3D G3DSA:2.30.40.10 445 474 2.1E-23 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 SUPERFAMILY SSF51338 43 99 1.33E-17 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 SUPERFAMILY SSF51338 434 471 1.33E-17 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_8462 8eb6961f8faeccfac5bb9414b66191f2 507 PANTHER PTHR11271:SF42 5 276 8.8E-24 T 19-04-2016 AMED_0497 0e03bff9cab4859cf5346e3efdca0167 257 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 20 235 2.3E-40 T 19-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMED_0497 0e03bff9cab4859cf5346e3efdca0167 257 PANTHER PTHR31272:SF4 7 247 3.6E-57 T 19-04-2016 AMED_0497 0e03bff9cab4859cf5346e3efdca0167 257 PANTHER PTHR31272 7 247 3.6E-57 T 19-04-2016 AMED_0435 fcd6fcaedc616d4c4073d8893baf9a9c 236 PANTHER PTHR30177 19 228 3.1E-37 T 19-04-2016 AMED_0435 fcd6fcaedc616d4c4073d8893baf9a9c 236 SUPERFAMILY SSF161098 18 218 3.79E-28 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0435 fcd6fcaedc616d4c4073d8893baf9a9c 236 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 48 220 1.0E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0435 fcd6fcaedc616d4c4073d8893baf9a9c 236 PANTHER PTHR30177:SF4 19 228 3.1E-37 T 19-04-2016 AMED_0435 fcd6fcaedc616d4c4073d8893baf9a9c 236 Gene3D G3DSA:1.10.3720.10 6 211 4.5E-27 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3958 c37e2c918c928e94eda0f8b58839d757 489 PANTHER PTHR22935 2 338 5.9E-35 T 19-04-2016 AMED_3958 c37e2c918c928e94eda0f8b58839d757 489 SUPERFAMILY SSF56601 3 340 2.54E-50 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3958 c37e2c918c928e94eda0f8b58839d757 489 Gene3D G3DSA:3.40.710.10 5 336 1.1E-50 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3958 c37e2c918c928e94eda0f8b58839d757 489 Pfam PF00144 Beta-lactamase 19 339 9.7E-39 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 PIRSF PIRSF000337 1 447 2.4E-155 T 19-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 4 432 1.9E-160 T 19-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 Pfam PF00296 Luciferase-like monooxygenase 20 389 3.5E-62 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 Gene3D G3DSA:3.20.20.30 350 439 1.3E-121 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 Gene3D G3DSA:3.20.20.30 1 310 1.3E-121 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 PANTHER PTHR30011:SF18 1 451 9.2E-155 T 19-04-2016 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 PANTHER PTHR30011 1 451 9.2E-155 T 19-04-2016 AMED_7132 5884fd4cd23d4ceeba3f0e5e7876c09e 451 SUPERFAMILY SSF51679 3 438 6.67E-119 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0127 e232e72b9a196a00ebc2cafee4bdcd58 126 Pfam PF15585 Immunity protein 7 1 122 2.7E-44 T 19-04-2016 IPR028965 Immunity protein 7 AMED_0397 4793184d0b7a4c26b7c2de54a3e4fd6d 283 PIRSF PIRSF017393 2 271 6.9E-81 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0397 4793184d0b7a4c26b7c2de54a3e4fd6d 283 Pfam PF04672 S-adenosyl methyltransferase 7 271 2.7E-76 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0397 4793184d0b7a4c26b7c2de54a3e4fd6d 283 Gene3D G3DSA:3.40.50.150 3 271 1.9E-93 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0397 4793184d0b7a4c26b7c2de54a3e4fd6d 283 SUPERFAMILY SSF53335 7 254 1.58E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3391 b9532fe5950f306e74db975b02530d72 140 SUPERFAMILY SSF54593 1 130 1.48E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3391 b9532fe5950f306e74db975b02530d72 140 PANTHER PTHR39434:SF1 2 139 6.1E-44 T 19-04-2016 AMED_3391 b9532fe5950f306e74db975b02530d72 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 128 6.7E-8 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_3391 b9532fe5950f306e74db975b02530d72 140 PANTHER PTHR39434 2 139 6.1E-44 T 19-04-2016 AMED_3391 b9532fe5950f306e74db975b02530d72 140 Gene3D G3DSA:3.10.180.10 8 135 1.3E-25 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_9146 a825ead523833a33a3e90ef95ba2eded 123 Pfam PF03780 Asp23 family, cell envelope-related function 7 118 2.7E-13 T 19-04-2016 IPR005531 Alkaline shock protein Asp23 AMED_4978 ad5c3711dea3351ea61a20675bddbee4 264 Gene3D G3DSA:1.10.260.40 9 66 4.9E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4978 ad5c3711dea3351ea61a20675bddbee4 264 PANTHER PTHR10245 5 188 2.1E-52 T 19-04-2016 AMED_4978 ad5c3711dea3351ea61a20675bddbee4 264 Pfam PF13560 Helix-turn-helix domain 9 70 7.3E-11 T 19-04-2016 AMED_4978 ad5c3711dea3351ea61a20675bddbee4 264 PANTHER PTHR10245:SF17 5 188 2.1E-52 T 19-04-2016 AMED_4978 ad5c3711dea3351ea61a20675bddbee4 264 SMART SM00530 12 67 1.9E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_4978 ad5c3711dea3351ea61a20675bddbee4 264 SUPERFAMILY SSF47413 7 66 4.5E-12 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1984 0fc4174bf1f912f2167e048264d2f87b 265 PANTHER PTHR30532 1 264 8.2E-62 T 19-04-2016 AMED_1984 0fc4174bf1f912f2167e048264d2f87b 265 Gene3D G3DSA:3.40.50.1980 1 111 1.3E-28 T 19-04-2016 AMED_1984 0fc4174bf1f912f2167e048264d2f87b 265 SUPERFAMILY SSF53807 1 260 7.06E-57 T 19-04-2016 AMED_1984 0fc4174bf1f912f2167e048264d2f87b 265 PANTHER PTHR30532:SF3 1 264 8.2E-62 T 19-04-2016 AMED_1984 0fc4174bf1f912f2167e048264d2f87b 265 Gene3D G3DSA:3.40.50.1980 112 264 9.2E-34 T 19-04-2016 AMED_1984 0fc4174bf1f912f2167e048264d2f87b 265 Pfam PF01497 Periplasmic binding protein 17 236 4.2E-22 T 19-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AMED_9184 f51fea966b2ee388d38a76d090e89325 116 Pfam PF03795 YCII-related domain 6 114 8.8E-17 T 19-04-2016 IPR005545 YCII-related AMED_9184 f51fea966b2ee388d38a76d090e89325 116 Gene3D G3DSA:3.30.70.1060 1 114 1.3E-30 T 19-04-2016 AMED_9184 f51fea966b2ee388d38a76d090e89325 116 PANTHER PTHR35174 3 116 1.1E-24 T 19-04-2016 AMED_9184 f51fea966b2ee388d38a76d090e89325 116 SUPERFAMILY SSF54909 6 113 5.36E-22 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_6833 a3bac1dd7da38673ffd470098dac3875 393 PANTHER PTHR23514:SF13 2 387 4.4E-79 T 19-04-2016 AMED_6833 a3bac1dd7da38673ffd470098dac3875 393 SUPERFAMILY SSF103473 6 384 7.06E-42 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6833 a3bac1dd7da38673ffd470098dac3875 393 Gene3D G3DSA:1.20.1250.20 5 181 1.1E-13 T 19-04-2016 AMED_6833 a3bac1dd7da38673ffd470098dac3875 393 PANTHER PTHR23514 2 387 4.4E-79 T 19-04-2016 AMED_6833 a3bac1dd7da38673ffd470098dac3875 393 Gene3D G3DSA:1.20.1250.20 198 389 9.6E-15 T 19-04-2016 AMED_6833 a3bac1dd7da38673ffd470098dac3875 393 Pfam PF07690 Major Facilitator Superfamily 8 229 7.5E-13 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_6095 607c4bfb834e6b094ba888261f52358a 461 PANTHER PTHR11559:SF142 3 461 1.1E-117 T 19-04-2016 AMED_6095 607c4bfb834e6b094ba888261f52358a 461 Pfam PF00135 Carboxylesterase family 3 428 6.9E-84 T 19-04-2016 IPR002018 Carboxylesterase, type B AMED_6095 607c4bfb834e6b094ba888261f52358a 461 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 73 83 - T 19-04-2016 IPR019819 Carboxylesterase type B, conserved site AMED_6095 607c4bfb834e6b094ba888261f52358a 461 SUPERFAMILY SSF53474 3 459 1.15E-97 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6095 607c4bfb834e6b094ba888261f52358a 461 Gene3D G3DSA:3.40.50.1820 3 460 6.4E-112 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6095 607c4bfb834e6b094ba888261f52358a 461 PANTHER PTHR11559 3 461 1.1E-117 T 19-04-2016 AMED_5514 480db5317975675bfeebd65bd7d6628c 108 Pfam PF08386 TAP-like protein 1 88 1.6E-16 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_5514 480db5317975675bfeebd65bd7d6628c 108 SUPERFAMILY SSF53474 14 79 3.88E-6 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5514 480db5317975675bfeebd65bd7d6628c 108 Gene3D G3DSA:3.40.50.1820 3 79 3.6E-10 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4446 9361f840bf7cdd1be97c4478308c7d02 259 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 10 92 2.4E-32 T 19-04-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_4446 9361f840bf7cdd1be97c4478308c7d02 259 Pfam PF01478 Type IV leader peptidase family 103 213 5.4E-13 T 19-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMED_4446 9361f840bf7cdd1be97c4478308c7d02 259 PANTHER PTHR30487 3 259 3.6E-66 T 19-04-2016 AMED_4446 9361f840bf7cdd1be97c4478308c7d02 259 PANTHER PTHR30487:SF0 3 259 3.6E-66 T 19-04-2016 AMED_7807 945470d86a20c7be2ec354cd5646a775 179 SUPERFAMILY SSF109854 2 123 1.42E-13 T 19-04-2016 AMED_7807 945470d86a20c7be2ec354cd5646a775 179 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 1 174 5.8E-41 T 19-04-2016 IPR017520 Conserved hypothetical protein CHP03086 AMED_7807 945470d86a20c7be2ec354cd5646a775 179 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 2 118 1.4E-10 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_7807 945470d86a20c7be2ec354cd5646a775 179 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 2 174 8.9E-22 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_8484 8e0ede9805adc9b7259a037aed746b37 935 PANTHER PTHR32387 16 548 6.4E-31 T 19-04-2016 AMED_8484 8e0ede9805adc9b7259a037aed746b37 935 SUPERFAMILY SSF55874 50 180 5.02E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8484 8e0ede9805adc9b7259a037aed746b37 935 Gene3D G3DSA:3.30.565.10 47 195 1.6E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8484 8e0ede9805adc9b7259a037aed746b37 935 PANTHER PTHR32387:SF5 16 548 6.4E-31 T 19-04-2016 AMED_0101 c932c1cab60ecc8444e7f5d4c120b0ef 549 TIGRFAM TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family 15 535 2.8E-63 T 19-04-2016 IPR019993 RecB family nuclease, TM0106, putative AMED_0101 c932c1cab60ecc8444e7f5d4c120b0ef 549 Pfam PF13482 RNase_H superfamily 447 535 4.9E-11 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1180 13161c50feb27fcc4d056f29ebe15428 222 Gene3D G3DSA:1.20.1260.10 27 155 3.2E-5 T 19-04-2016 IPR012347 Ferritin-related AMED_1180 13161c50feb27fcc4d056f29ebe15428 222 Pfam PF13628 Domain of unknown function (DUF4142) 31 164 1.7E-17 T 19-04-2016 IPR025419 Domain of unknown function DUF4142 AMED_6617 cec3c77c36c1286b6353a853677e0d3c 366 Pfam PF06271 RDD family 78 204 7.4E-22 T 19-04-2016 IPR010432 RDD AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 Gene3D G3DSA:2.60.40.10 60 144 2.0E-11 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 Gene3D G3DSA:2.60.40.10 155 243 1.8E-20 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 Gene3D G3DSA:2.120.10.30 253 574 9.9E-84 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 SMART SM00060 62 136 17.0 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 SMART SM00060 157 233 1.5E-9 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 PANTHER PTHR19328 254 488 2.5E-57 T 19-04-2016 AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 SUPERFAMILY SSF50952 254 555 4.32E-38 T 19-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 Pfam PF07995 Glucose / Sorbosone dehydrogenase 262 555 1.8E-64 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 Pfam PF00041 Fibronectin type III domain 160 229 6.2E-7 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_3912 2d61339396998b0bff6322007ccb2ea7 577 SUPERFAMILY SSF49265 60 243 1.41E-15 T 19-04-2016 IPR003961 Fibronectin type III GO:0005515 AMED_1846 6a9b1f3979f2d8823d5bc8de114b1379 159 Pfam PF04138 GtrA-like protein 30 146 1.7E-10 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_0624 0150d2a88155bda6c98cd4e9b8ca721f 351 Gene3D G3DSA:3.40.50.1970 4 164 1.4E-47 T 19-04-2016 AMED_0624 0150d2a88155bda6c98cd4e9b8ca721f 351 Pfam PF01761 3-dehydroquinate synthase 60 302 2.4E-80 T 19-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_0624 0150d2a88155bda6c98cd4e9b8ca721f 351 PANTHER PTHR21090 1 339 8.9E-93 T 19-04-2016 AMED_0624 0150d2a88155bda6c98cd4e9b8ca721f 351 SUPERFAMILY SSF56796 5 331 2.75E-87 T 19-04-2016 AMED_0624 0150d2a88155bda6c98cd4e9b8ca721f 351 Gene3D G3DSA:1.20.1090.10 165 331 3.2E-38 T 19-04-2016 AMED_0624 0150d2a88155bda6c98cd4e9b8ca721f 351 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 3 333 30.329 T 19-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 AMED_5144 950d62b6f1c5551a3d0c2e30203eeb10 132 Pfam PF13581 Histidine kinase-like ATPase domain 13 105 1.9E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 Gene3D G3DSA:3.90.1150.10 286 420 5.0E-48 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 SUPERFAMILY SSF53383 8 420 7.13E-165 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 PIRSF PIRSF000412 2 421 1.1E-160 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 224 240 - T 19-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 Gene3D G3DSA:3.40.640.10 39 285 6.9E-98 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 PANTHER PTHR11680:SF0 10 420 1.9E-218 T 19-04-2016 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 PANTHER PTHR11680 10 420 1.9E-218 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 9 419 49.125 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_8759 0baf923e1c698c7c12b5daf22dfd22df 422 Pfam PF00464 Serine hydroxymethyltransferase 11 386 1.3E-153 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMED_5187 0ec523ee143cc7d5b3003d2aa311ac40 397 PANTHER PTHR15108 30 396 4.1E-40 T 19-04-2016 AMED_5187 0ec523ee143cc7d5b3003d2aa311ac40 397 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 30 377 1.7E-97 T 19-04-2016 AMED_5187 0ec523ee143cc7d5b3003d2aa311ac40 397 SUPERFAMILY SSF48208 25 392 4.54E-94 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5187 0ec523ee143cc7d5b3003d2aa311ac40 397 Gene3D G3DSA:1.50.10.10 9 380 8.1E-84 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_8981 0197e2ada2ee58b7332703a1e9d38f07 605 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 444 601 6.2E-16 T 19-04-2016 AMED_8981 0197e2ada2ee58b7332703a1e9d38f07 605 Gene3D G3DSA:3.60.21.10 42 248 9.6E-14 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8981 0197e2ada2ee58b7332703a1e9d38f07 605 Gene3D G3DSA:2.60.120.200 419 602 3.0E-22 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_8981 0197e2ada2ee58b7332703a1e9d38f07 605 SUPERFAMILY SSF56300 44 270 2.32E-20 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMED_8981 0197e2ada2ee58b7332703a1e9d38f07 605 Pfam PF00149 Calcineurin-like phosphoesterase 46 208 3.7E-7 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMED_8981 0197e2ada2ee58b7332703a1e9d38f07 605 SUPERFAMILY SSF49899 352 601 8.57E-24 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_2721 2ef9ba86a637f66030a0b31ce2ea3c20 181 SUPERFAMILY SSF46785 2 133 2.1E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2721 2ef9ba86a637f66030a0b31ce2ea3c20 181 SMART SM00418 2 93 0.0024 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_2721 2ef9ba86a637f66030a0b31ce2ea3c20 181 Gene3D G3DSA:1.10.10.10 3 77 7.2E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2721 2ef9ba86a637f66030a0b31ce2ea3c20 181 Pfam PF12840 Helix-turn-helix domain 3 62 1.2E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2144 ef37004add3306e8a750eacc9fea478c 315 Gene3D G3DSA:3.40.50.720 27 272 2.0E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2144 ef37004add3306e8a750eacc9fea478c 315 SUPERFAMILY SSF51735 27 277 3.85E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2144 ef37004add3306e8a750eacc9fea478c 315 Pfam PF00106 short chain dehydrogenase 30 226 7.6E-22 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2144 ef37004add3306e8a750eacc9fea478c 315 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 220 1.6E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2144 ef37004add3306e8a750eacc9fea478c 315 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 1.6E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2144 ef37004add3306e8a750eacc9fea478c 315 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 101 112 1.6E-9 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2144 ef37004add3306e8a750eacc9fea478c 315 PANTHER PTHR24320 10 311 6.2E-90 T 19-04-2016 AMED_3260 57e90a137d3a72cec545ec1996faee55 214 SUPERFAMILY SSF56634 20 90 4.97E-6 T 19-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 AMED_9063 8b510079eca28fb5e40b4de497c101b2 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 228 7.5E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9063 8b510079eca28fb5e40b4de497c101b2 254 PANTHER PTHR30614 1 233 1.5E-71 T 19-04-2016 AMED_9063 8b510079eca28fb5e40b4de497c101b2 254 SUPERFAMILY SSF161098 21 215 1.11E-39 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9063 8b510079eca28fb5e40b4de497c101b2 254 Gene3D G3DSA:1.10.3720.10 24 228 2.0E-46 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9063 8b510079eca28fb5e40b4de497c101b2 254 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 119 2.9E-21 T 19-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AMED_5249 44f300d22d6be757f0cb9c2fac819f14 1009 Pfam PF00754 F5/8 type C domain 628 706 8.3E-16 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_5249 44f300d22d6be757f0cb9c2fac819f14 1009 SUPERFAMILY SSF49785 921 991 9.92E-8 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5249 44f300d22d6be757f0cb9c2fac819f14 1009 Gene3D G3DSA:2.60.120.260 623 708 2.4E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5249 44f300d22d6be757f0cb9c2fac819f14 1009 SUPERFAMILY SSF49785 620 714 6.52E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_5249 44f300d22d6be757f0cb9c2fac819f14 1009 Gene3D G3DSA:2.60.120.260 920 1006 3.1E-7 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 SUPERFAMILY SSF51735 1 110 2.37E-13 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 104 1.2E-22 T 19-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 Gene3D G3DSA:3.40.50.720 1 195 1.0E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 197 317 2.1E-30 T 19-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 SUPERFAMILY SSF48179 197 319 6.46E-30 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 PANTHER PTHR21708:SF29 1 122 2.5E-140 T 19-04-2016 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 PANTHER PTHR21708:SF29 138 319 2.5E-140 T 19-04-2016 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 PANTHER PTHR21708 1 122 2.5E-140 T 19-04-2016 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 PANTHER PTHR21708 138 319 2.5E-140 T 19-04-2016 AMED_4576 12edb84991f73a760daf7f03a4ccfecf 329 Gene3D G3DSA:1.10.1040.10 198 321 1.6E-31 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMED_6938 297ba0a378624790c775795f5b618057 383 SUPERFAMILY SSF51569 53 327 1.0E-10 T 19-04-2016 AMED_6938 297ba0a378624790c775795f5b618057 383 Gene3D G3DSA:3.20.20.70 56 334 1.4E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6938 297ba0a378624790c775795f5b618057 383 Pfam PF06187 Protein of unknown function (DUF993) 26 382 1.9E-163 T 19-04-2016 IPR009334 Protein of unknown function DUF993 AMED_0651 02b34094e8698519fdb60cb0ade82745 230 Gene3D G3DSA:3.40.50.970 6 219 2.9E-52 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0651 02b34094e8698519fdb60cb0ade82745 230 PANTHER PTHR11624 34 219 1.1E-37 T 19-04-2016 IPR033247 Transketolase family AMED_0651 02b34094e8698519fdb60cb0ade82745 230 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 24 208 2.4E-26 T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_0651 02b34094e8698519fdb60cb0ade82745 230 SUPERFAMILY SSF52518 25 219 2.13E-49 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4287 a4770c2245e57523da2b9383601ebd13 155 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 3 139 3.3E-10 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_4287 a4770c2245e57523da2b9383601ebd13 155 Gene3D G3DSA:3.30.530.20 3 143 3.5E-10 T 19-04-2016 IPR023393 START-like domain AMED_4287 a4770c2245e57523da2b9383601ebd13 155 SUPERFAMILY SSF55961 3 143 8.17E-23 T 19-04-2016 AMED_5438 1ceffe9ee0d394866b1d7f7f5d843768 184 SUPERFAMILY SSF46785 10 176 3.46E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5438 1ceffe9ee0d394866b1d7f7f5d843768 184 PANTHER PTHR33169:SF2 10 176 7.9E-14 T 19-04-2016 AMED_5438 1ceffe9ee0d394866b1d7f7f5d843768 184 Pfam PF03551 Transcriptional regulator PadR-like family 12 87 1.1E-10 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_5438 1ceffe9ee0d394866b1d7f7f5d843768 184 PANTHER PTHR33169 10 176 7.9E-14 T 19-04-2016 AMED_5438 1ceffe9ee0d394866b1d7f7f5d843768 184 Gene3D G3DSA:1.10.10.10 4 100 2.6E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 PANTHER PTHR12526 1 408 4.8E-162 T 19-04-2016 AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 Pfam PF13439 Glycosyltransferase Family 4 17 198 2.4E-30 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 TIGRFAM TIGR03449 mycothiol_MshA: D-inositol-3-phosphate glycosyltransferase 1 404 3.1E-193 T 19-04-2016 IPR017814 Mycothiol biosynthesis protein, MshA GO:0008375|GO:0010125 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 PANTHER PTHR12526:SF185 1 408 4.8E-162 T 19-04-2016 AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 SUPERFAMILY SSF53756 16 402 2.02E-81 T 19-04-2016 AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 Hamap MF_01695 D-inositol-3-phosphate glycosyltransferase [mshA]. 1 407 50.555 T 19-04-2016 IPR017814 Mycothiol biosynthesis protein, MshA GO:0008375|GO:0010125 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 Gene3D G3DSA:3.40.50.2000 178 379 6.7E-41 T 19-04-2016 AMED_0453 f0f1e889806f4aac6fe0de0d1cec2a04 418 Pfam PF00534 Glycosyl transferases group 1 207 379 1.5E-32 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_3051 c7c9820acb6056c82e141c6ba2237f1d 140 SMART SM00387 40 140 0.0029 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3051 c7c9820acb6056c82e141c6ba2237f1d 140 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 41 135 1.9E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3051 c7c9820acb6056c82e141c6ba2237f1d 140 SUPERFAMILY SSF55874 36 136 1.57E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3051 c7c9820acb6056c82e141c6ba2237f1d 140 Gene3D G3DSA:3.30.565.10 11 135 5.0E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8848 9478880280ddf2f8fda0b1a999dbb317 53 Pfam PF13783 Domain of unknown function (DUF4177) 6 42 3.3E-6 T 19-04-2016 IPR025234 Protein of unknown function DUF4177 AMED_8117 32749a5cfb4ac4af20132c877b1a2f1c 81 Gene3D G3DSA:1.10.287.1060 3 67 6.6E-10 T 19-04-2016 AMED_8117 32749a5cfb4ac4af20132c877b1a2f1c 81 SUPERFAMILY SSF140453 3 70 6.15E-11 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_8117 32749a5cfb4ac4af20132c877b1a2f1c 81 Pfam PF06013 Proteins of 100 residues with WXG 3 68 4.2E-9 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_1060 875bf4211d39aa53c4dbe747cd253ec9 264 SUPERFAMILY SSF52096 4 263 3.82E-82 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_1060 875bf4211d39aa53c4dbe747cd253ec9 264 PANTHER PTHR11941:SF76 6 261 8.7E-95 T 19-04-2016 AMED_1060 875bf4211d39aa53c4dbe747cd253ec9 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 263 1.3E-61 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_1060 875bf4211d39aa53c4dbe747cd253ec9 264 Gene3D G3DSA:3.90.226.10 4 205 4.9E-64 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_1060 875bf4211d39aa53c4dbe747cd253ec9 264 PANTHER PTHR11941 6 261 8.7E-95 T 19-04-2016 AMED_1060 875bf4211d39aa53c4dbe747cd253ec9 264 Gene3D G3DSA:1.10.12.10 206 264 9.8E-18 T 19-04-2016 IPR014748 Crontonase, C-terminal AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 410 527 1.5E-5 T 19-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 PANTHER PTHR18968 4 559 1.4E-118 T 19-04-2016 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 3 553 32.271 T 19-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 PIRSF PIRSF004983 2 559 2.8E-139 T 19-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 SUPERFAMILY SSF52518 9 183 1.62E-33 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 Gene3D G3DSA:3.40.50.970 337 547 5.8E-27 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 PANTHER PTHR18968:SF114 4 559 1.4E-118 T 19-04-2016 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 SUPERFAMILY SSF52518 366 545 6.55E-22 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 10 180 2.9E-32 T 19-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 9 427 1.2E-113 T 19-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 AMED_0510 8892c6471204f1fbe619ab9cc4d289c6 560 Gene3D G3DSA:3.40.50.970 10 183 5.1E-50 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4817 377300c23674709a1d934795abba75f9 483 SMART SM00458 39 165 1.6E-32 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_4817 377300c23674709a1d934795abba75f9 483 Gene3D G3DSA:2.80.10.50 41 163 8.2E-43 T 19-04-2016 AMED_4817 377300c23674709a1d934795abba75f9 483 PANTHER PTHR40631:SF1 182 483 1.5E-218 T 19-04-2016 AMED_4817 377300c23674709a1d934795abba75f9 483 Pfam PF00652 Ricin-type beta-trefoil lectin domain 39 162 6.5E-32 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_4817 377300c23674709a1d934795abba75f9 483 PANTHER PTHR40631 182 483 1.5E-218 T 19-04-2016 AMED_4817 377300c23674709a1d934795abba75f9 483 SUPERFAMILY SSF75005 202 472 1.37E-30 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_4817 377300c23674709a1d934795abba75f9 483 Pfam PF03664 Glycosyl hydrolase family 62 183 453 8.1E-157 T 19-04-2016 IPR005193 Glycoside hydrolase, family 62, arabinosidase GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 AMED_4817 377300c23674709a1d934795abba75f9 483 SUPERFAMILY SSF50370 38 163 6.68E-42 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_3345 d2bb9a2505332b42001297638bd395fa 193 Gene3D G3DSA:1.10.10.60 7 55 2.2E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 PANTHER PTHR30055 1 192 8.4E-27 T 19-04-2016 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 3.6E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 3.6E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 Gene3D G3DSA:1.10.357.10 57 191 7.3E-19 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 PANTHER PTHR30055:SF66 1 192 8.4E-27 T 19-04-2016 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 SUPERFAMILY SSF46689 5 71 1.8E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 59 3.5E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3345 d2bb9a2505332b42001297638bd395fa 193 Pfam PF16859 Bacterial transcriptional repressor C-terminal 74 186 6.0E-22 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3345 d2bb9a2505332b42001297638bd395fa 193 SUPERFAMILY SSF48498 75 191 1.74E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7040 9f74e2aa434b3034b68d9fb9f373f00d 466 SUPERFAMILY SSF54909 21 465 5.23E-90 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7040 9f74e2aa434b3034b68d9fb9f373f00d 466 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 41 462 2.3E-30 T 19-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- AMED_7040 9f74e2aa434b3034b68d9fb9f373f00d 466 PANTHER PTHR30521:SF2 84 466 1.6E-41 T 19-04-2016 AMED_7040 9f74e2aa434b3034b68d9fb9f373f00d 466 PANTHER PTHR30521 84 466 1.6E-41 T 19-04-2016 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 Pfam PF00463 Isocitrate lyase family 14 250 4.1E-53 T 19-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 Pfam PF00463 Isocitrate lyase family 251 422 3.2E-43 T 19-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 PANTHER PTHR21631 7 426 5.8E-159 T 19-04-2016 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 Gene3D G3DSA:3.20.20.60 7 406 8.4E-163 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 SUPERFAMILY SSF51621 5 425 1.97E-157 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 PIRSF PIRSF001362 1 426 2.4E-238 T 19-04-2016 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 ProSitePatterns PS00161 Isocitrate lyase signature. 187 192 - T 19-04-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 AMED_1638 0be7786f77a3c5c498a9dea1faa1bf3c 426 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 10 249 6.0E-106 T 19-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 PANTHER PTHR24421 380 596 5.2E-46 T 19-04-2016 AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 SUPERFAMILY SSF55874 491 589 3.54E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 PANTHER PTHR24421 109 203 5.2E-46 T 19-04-2016 AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 Pfam PF07730 Histidine kinase 385 449 4.5E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 Gene3D G3DSA:3.30.565.10 502 592 7.3E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 PANTHER PTHR24421:SF26 109 203 5.2E-46 T 19-04-2016 AMED_9271 1cd17ae9ca7a2db8e79e40289f554b31 599 PANTHER PTHR24421:SF26 380 596 5.2E-46 T 19-04-2016 AMED_6639 b0979b05f29a84b95c0be90d724b3fa9 71 Pfam PF04149 Domain of unknown function (DUF397) 4 54 9.0E-18 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 SUPERFAMILY SSF48613 4 229 2.13E-58 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 PANTHER PTHR40279:SF2 22 228 2.8E-79 T 19-04-2016 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 230 93.287 T 19-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 Gene3D G3DSA:1.20.910.10 5 228 3.5E-90 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 12 228 3.5E-82 T 19-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 PANTHER PTHR40279 22 228 2.8E-79 T 19-04-2016 AMED_7864 d5cd12b0130120781ab70745a3f03bc7 230 Pfam PF03070 TENA/THI-4/PQQC family 16 223 1.4E-43 T 19-04-2016 IPR004305 Thiaminase-2/PQQC AMED_6296 407a3e89fa3c37fa47b9ef21facfb6a5 315 Pfam PF00892 EamA-like transporter family 164 306 9.4E-23 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_6296 407a3e89fa3c37fa47b9ef21facfb6a5 315 Pfam PF00892 EamA-like transporter family 18 152 2.9E-15 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_6296 407a3e89fa3c37fa47b9ef21facfb6a5 315 PANTHER PTHR12715 16 314 1.2E-49 T 19-04-2016 AMED_6296 407a3e89fa3c37fa47b9ef21facfb6a5 315 SUPERFAMILY SSF103481 54 153 1.57E-9 T 19-04-2016 AMED_6296 407a3e89fa3c37fa47b9ef21facfb6a5 315 PANTHER PTHR12715:SF4 16 314 1.2E-49 T 19-04-2016 AMED_6296 407a3e89fa3c37fa47b9ef21facfb6a5 315 SUPERFAMILY SSF103481 222 310 1.27E-15 T 19-04-2016 AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 Pfam PF00005 ABC transporter 29 186 3.3E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 PANTHER PTHR24220:SF585 15 265 1.3E-105 T 19-04-2016 AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 SUPERFAMILY SSF52540 13 254 2.23E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 PANTHER PTHR24220 15 265 1.3E-105 T 19-04-2016 AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 Gene3D G3DSA:3.40.50.300 9 259 2.8E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 SMART SM00382 38 254 2.0E-11 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5654 0cf8f2a8efa116b556c48bc8251e990d 267 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5090 7791bccef3b64082b2a645a09462ed97 299 PANTHER PTHR11820:SF88 1 293 9.3E-105 T 19-04-2016 AMED_5090 7791bccef3b64082b2a645a09462ed97 299 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 69 281 9.2E-51 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_5090 7791bccef3b64082b2a645a09462ed97 299 Gene3D G3DSA:3.90.850.10 60 282 3.9E-55 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_5090 7791bccef3b64082b2a645a09462ed97 299 SUPERFAMILY SSF56529 67 282 1.57E-58 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_5090 7791bccef3b64082b2a645a09462ed97 299 PANTHER PTHR11820 1 293 9.3E-105 T 19-04-2016 AMED_5090 7791bccef3b64082b2a645a09462ed97 299 Pfam PF10370 Domain of unknown function (DUF2437) 1 63 5.5E-6 T 19-04-2016 IPR018833 Domain of unknown function DUF2437 AMED_7383 4a9626bc4903625cba864745b45d37b1 241 PANTHER PTHR30294 1 240 7.5E-43 T 19-04-2016 AMED_7383 4a9626bc4903625cba864745b45d37b1 241 Pfam PF01061 ABC-2 type transporter 6 203 5.1E-30 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_7383 4a9626bc4903625cba864745b45d37b1 241 PANTHER PTHR30294:SF12 1 240 7.5E-43 T 19-04-2016 AMED_7383 4a9626bc4903625cba864745b45d37b1 241 PIRSF PIRSF006648 1 241 1.1E-16 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_3517 de1dea18993b11b0d12c6d65af0cdc94 234 PANTHER PTHR10204 7 223 5.9E-29 T 19-04-2016 AMED_3517 de1dea18993b11b0d12c6d65af0cdc94 234 Gene3D G3DSA:3.40.50.360 8 164 2.9E-17 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_3517 de1dea18993b11b0d12c6d65af0cdc94 234 PANTHER PTHR10204:SF48 7 223 5.9E-29 T 19-04-2016 AMED_3517 de1dea18993b11b0d12c6d65af0cdc94 234 Pfam PF03358 NADPH-dependent FMN reductase 8 160 8.0E-15 T 19-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMED_3517 de1dea18993b11b0d12c6d65af0cdc94 234 SUPERFAMILY SSF52218 8 233 9.98E-33 T 19-04-2016 IPR029039 Flavoprotein-like domain AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PANTHER PTHR21661 28 423 2.4E-111 T 19-04-2016 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 Pfam PF06441 Epoxide hydrolase N terminus 38 143 6.2E-34 T 19-04-2016 IPR010497 Epoxide hydrolase, N-terminal KEGG: 00980+3.3.2.9 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 SUPERFAMILY SSF53474 33 421 1.93E-85 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PIRSF PIRSF001112 7 423 1.0E-133 T 19-04-2016 IPR016292 Epoxide hydrolase GO:0033961 KEGG: 00980+3.3.2.9 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 Gene3D G3DSA:3.40.50.1820 33 422 3.0E-123 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 163 178 1.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 134 152 1.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 364 380 1.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PRINTS PR00412 Epoxide hydrolase signature 396 418 1.3E-8 T 19-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 AMED_5635 5f4d8712694a775c2e49444f1112385f 423 PANTHER PTHR21661:SF35 28 423 2.4E-111 T 19-04-2016 AMED_7327 8bfd33a7d35787bddb09520143b1cfd2 134 Gene3D G3DSA:3.30.530.20 1 123 8.8E-10 T 19-04-2016 IPR023393 START-like domain AMED_7327 8bfd33a7d35787bddb09520143b1cfd2 134 SUPERFAMILY SSF55961 1 123 8.61E-16 T 19-04-2016 AMED_7327 8bfd33a7d35787bddb09520143b1cfd2 134 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 123 1.2E-10 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_7525 e50013ae470719021ea8f38c63c6ae9c 392 PANTHER PTHR33744 16 104 1.5E-21 T 19-04-2016 AMED_7525 e50013ae470719021ea8f38c63c6ae9c 392 PANTHER PTHR33744 120 391 1.5E-21 T 19-04-2016 AMED_7525 e50013ae470719021ea8f38c63c6ae9c 392 Pfam PF02426 Muconolactone delta-isomerase 195 255 4.6E-6 T 19-04-2016 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 AMED_7525 e50013ae470719021ea8f38c63c6ae9c 392 Pfam PF13556 PucR C-terminal helix-turn-helix domain 326 383 1.8E-21 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_7525 e50013ae470719021ea8f38c63c6ae9c 392 SUPERFAMILY SSF54909 197 270 2.31E-6 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7506 41a3a8a50d86fb2b03e5e73c671a5fd6 117 Gene3D G3DSA:3.10.290.10 1 85 1.1E-23 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_7506 41a3a8a50d86fb2b03e5e73c671a5fd6 117 SMART SM00363 1 64 0.0074 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_7506 41a3a8a50d86fb2b03e5e73c671a5fd6 117 Pfam PF01479 S4 domain 2 45 3.2E-9 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMED_7506 41a3a8a50d86fb2b03e5e73c671a5fd6 117 PIRSF PIRSF016821 1 117 6.0E-43 T 19-04-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 AMED_7506 41a3a8a50d86fb2b03e5e73c671a5fd6 117 SUPERFAMILY SSF55174 1 80 1.96E-19 T 19-04-2016 AMED_4313 80b2fbc5d80fe25878da4a430453db5f 284 PANTHER PTHR38479:SF2 1 284 4.8E-22 T 19-04-2016 AMED_4313 80b2fbc5d80fe25878da4a430453db5f 284 PANTHER PTHR38479 1 284 4.8E-22 T 19-04-2016 AMED_4313 80b2fbc5d80fe25878da4a430453db5f 284 Pfam PF06224 Winged helix DNA-binding domain 29 186 1.1E-28 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 184 9.5E-15 T 19-04-2016 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 9.5E-15 T 19-04-2016 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 26 41 9.5E-15 T 19-04-2016 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 PANTHER PTHR13789 1 263 3.9E-120 T 19-04-2016 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 Pfam PF01494 FAD binding domain 6 216 8.7E-45 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 SUPERFAMILY SSF51905 6 47 6.2E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 SUPERFAMILY SSF51905 140 244 6.2E-32 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 PANTHER PTHR13789:SF192 1 263 3.9E-120 T 19-04-2016 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 Gene3D G3DSA:3.30.9.10 16 174 1.1E-63 T 19-04-2016 AMED_0392 3289052d3348bcf32fe25f4ffe0d7197 265 SUPERFAMILY SSF54373 50 150 1.06E-40 T 19-04-2016 AMED_5414 d93c1f3b9048a3aa2fc42b6415fba0c1 377 SUPERFAMILY SSF53756 1 377 7.14E-74 T 19-04-2016 AMED_5414 d93c1f3b9048a3aa2fc42b6415fba0c1 377 Gene3D G3DSA:3.40.50.2000 1 213 2.2E-34 T 19-04-2016 AMED_5414 d93c1f3b9048a3aa2fc42b6415fba0c1 377 Pfam PF06722 Protein of unknown function (DUF1205) 170 264 1.7E-18 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5414 d93c1f3b9048a3aa2fc42b6415fba0c1 377 Gene3D G3DSA:3.40.50.2000 214 358 1.3E-24 T 19-04-2016 AMED_4399 2530dbb6d4d62b0405d1acb5f4ad8a63 348 PANTHER PTHR32196:SF19 4 337 1.6E-102 T 19-04-2016 AMED_4399 2530dbb6d4d62b0405d1acb5f4ad8a63 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 312 1.7E-40 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_4399 2530dbb6d4d62b0405d1acb5f4ad8a63 348 PANTHER PTHR32196 4 337 1.6E-102 T 19-04-2016 AMED_4384 0967930c89f4b449c927db7575b98843 206 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 31 200 7.1E-60 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_4384 0967930c89f4b449c927db7575b98843 206 PANTHER PTHR11109 22 201 2.8E-82 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_4384 0967930c89f4b449c927db7575b98843 206 SUPERFAMILY SSF55620 19 201 5.04E-69 T 19-04-2016 AMED_4384 0967930c89f4b449c927db7575b98843 206 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 25 203 34.918 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_4384 0967930c89f4b449c927db7575b98843 206 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 82 98 - T 19-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_4384 0967930c89f4b449c927db7575b98843 206 Gene3D G3DSA:3.30.1130.10 75 201 6.0E-55 T 19-04-2016 AMED_4384 0967930c89f4b449c927db7575b98843 206 Gene3D G3DSA:1.10.286.10 24 65 3.0E-12 T 19-04-2016 AMED_4384 0967930c89f4b449c927db7575b98843 206 Pfam PF01227 GTP cyclohydrolase I 30 201 5.2E-65 T 19-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 Gene3D G3DSA:2.60.120.260 620 739 5.7E-18 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 PANTHER PTHR31151 28 562 9.4E-204 T 19-04-2016 AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 SUPERFAMILY SSF48208 108 392 2.18E-15 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 Pfam PF03422 Carbohydrate binding module (family 6) 634 724 1.0E-5 T 19-04-2016 IPR005084 Carbohydrate binding module family 6 GO:0030246 AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 PANTHER PTHR31151:SF0 28 562 9.4E-204 T 19-04-2016 AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 SUPERFAMILY SSF49785 620 739 1.91E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 52 554 1.0E-145 T 19-04-2016 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 AMED_3413 e5f75f3ffe6e50b525faeea0496d1d45 740 Gene3D G3DSA:1.50.10.10 196 318 1.0E-5 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_6224 95872e6ed857f3f087e0ed1fdcb7a290 142 SUPERFAMILY SSF55874 42 128 9.49E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6224 95872e6ed857f3f087e0ed1fdcb7a290 142 Pfam PF13581 Histidine kinase-like ATPase domain 23 127 3.8E-7 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8220 0f86c8afd62ba7ac5dc979e90856c82b 305 Pfam PF00296 Luciferase-like monooxygenase 4 241 1.7E-47 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8220 0f86c8afd62ba7ac5dc979e90856c82b 305 SUPERFAMILY SSF51679 11 300 2.75E-51 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8220 0f86c8afd62ba7ac5dc979e90856c82b 305 Gene3D G3DSA:3.20.20.30 3 300 9.5E-58 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8220 0f86c8afd62ba7ac5dc979e90856c82b 305 PANTHER PTHR30011 23 238 2.2E-30 T 19-04-2016 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 20 735 9.7E-143 T 19-04-2016 IPR005887 Alpha-1,2-mannosidase, putative KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Pfam PF00754 F5/8 type C domain 773 895 7.6E-15 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Gene3D G3DSA:1.20.1610.10 466 597 1.6E-44 T 19-04-2016 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Gene3D G3DSA:2.60.120.260 764 899 2.4E-20 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 SUPERFAMILY SSF49785 761 899 7.02E-22 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Gene3D G3DSA:2.70.98.10 35 345 1.5E-93 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Pfam PF07971 Glycosyl hydrolase family 92 261 732 3.2E-145 T 19-04-2016 IPR012939 Glycosyl hydrolase family 92 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 PANTHER PTHR12143 13 774 4.1E-113 T 19-04-2016 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 SUPERFAMILY SSF48208 285 595 3.74E-12 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 SUPERFAMILY SSF48208 626 716 3.74E-12 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Gene3D G3DSA:3.30.2080.10 598 743 3.4E-47 T 19-04-2016 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 PANTHER PTHR12143:SF22 13 774 4.1E-113 T 19-04-2016 AMED_7034 183b3ec827952d5d9fd6e8d8b175ffaa 900 Gene3D G3DSA:1.20.1050.60 368 453 4.4E-21 T 19-04-2016 AMED_8859 6e36ddbfe5e47850a4fd459f31c1a56f 339 SUPERFAMILY SSF55729 167 331 1.75E-9 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8859 6e36ddbfe5e47850a4fd459f31c1a56f 339 Pfam PF13480 Acetyltransferase (GNAT) domain 177 320 1.8E-5 T 19-04-2016 AMED_8859 6e36ddbfe5e47850a4fd459f31c1a56f 339 Gene3D G3DSA:3.40.630.30 159 313 4.3E-4 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4294 119ae94882e23187931f840913609f4a 424 Gene3D G3DSA:3.30.470.20 91 344 1.6E-26 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_4294 119ae94882e23187931f840913609f4a 424 SUPERFAMILY SSF56059 113 336 5.77E-31 T 19-04-2016 AMED_4294 119ae94882e23187931f840913609f4a 424 Pfam PF13535 ATP-grasp domain 135 295 5.3E-12 T 19-04-2016 AMED_0370 1103027844c2ee390f0ef7dc01426faf 126 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 17 109 1.8E-23 T 19-04-2016 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 Gene3D G3DSA:3.40.50.300 8 244 1.8E-83 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 Pfam PF00005 ABC transporter 25 173 1.2E-34 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 PIRSF PIRSF039085 6 249 2.8E-111 T 19-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 SUPERFAMILY SSF52540 9 243 6.81E-80 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 PANTHER PTHR24220:SF474 11 250 2.4E-146 T 19-04-2016 AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 PANTHER PTHR24220 11 250 2.4E-146 T 19-04-2016 AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 SMART SM00382 34 221 1.1E-18 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_2363 89e7355d8ecacd33fb9450bd215f6435 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_3988 7df0e5e177f4f6c7b6496598f13459a6 183 Pfam PF14014 Protein of unknown function (DUF4230) 19 175 1.4E-31 T 19-04-2016 IPR025324 Protein of unknown function DUF4230 AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 176 0.0016 T 19-04-2016 AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 Gene3D G3DSA:3.40.50.720 7 210 1.6E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PANTHER PTHR24322 9 124 2.0E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PANTHER PTHR24322 140 173 2.0E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 SUPERFAMILY SSF51735 6 210 7.38E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 Pfam PF00106 short chain dehydrogenase 7 183 2.1E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 6.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 6.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 208 6.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 6.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 6.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.2E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 1.7E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 1.7E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4271 aec616cc88fe65a7d6f64213dcfa8a7e 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 1.7E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_7953 b519f390c6181e34b80c66695c37f951 172 PANTHER PTHR23091 1 128 3.8E-22 T 19-04-2016 AMED_7953 b519f390c6181e34b80c66695c37f951 172 Pfam PF13527 Acetyltransferase (GNAT) domain 3 129 6.2E-10 T 19-04-2016 AMED_7953 b519f390c6181e34b80c66695c37f951 172 Gene3D G3DSA:3.40.630.30 1 133 1.6E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7953 b519f390c6181e34b80c66695c37f951 172 PANTHER PTHR23091:SF237 1 128 3.8E-22 T 19-04-2016 AMED_7953 b519f390c6181e34b80c66695c37f951 172 SUPERFAMILY SSF55729 1 135 3.26E-25 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7740 cc30bd036bab0a2004346febecf7fe09 174 PANTHER PTHR37816:SF1 6 174 3.5E-30 T 19-04-2016 AMED_7740 cc30bd036bab0a2004346febecf7fe09 174 SUPERFAMILY SSF52540 5 103 8.38E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7740 cc30bd036bab0a2004346febecf7fe09 174 Pfam PF13238 AAA domain 8 71 4.6E-7 T 19-04-2016 AMED_7740 cc30bd036bab0a2004346febecf7fe09 174 PANTHER PTHR37816 6 174 3.5E-30 T 19-04-2016 AMED_7740 cc30bd036bab0a2004346febecf7fe09 174 Gene3D G3DSA:3.40.50.300 5 105 1.2E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1214 536d87c55a7b4d84dc118be1163ae106 204 Pfam PF13468 Glyoxalase-like domain 2 175 6.9E-43 T 19-04-2016 IPR025870 Glyoxalase-like domain AMED_1214 536d87c55a7b4d84dc118be1163ae106 204 Gene3D G3DSA:3.10.180.10 2 114 1.5E-4 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1214 536d87c55a7b4d84dc118be1163ae106 204 SUPERFAMILY SSF54593 2 109 1.48E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 SUPERFAMILY SSF48498 77 173 1.67E-16 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 PANTHER PTHR30055 9 173 3.9E-29 T 19-04-2016 AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 7.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 7.7E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 Gene3D G3DSA:1.10.357.10 5 170 2.6E-25 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 4.6E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 PANTHER PTHR30055:SF47 9 173 3.9E-29 T 19-04-2016 AMED_1642 0f1f91005f1142fe43c85e83c5271c00 177 SUPERFAMILY SSF46689 3 71 3.75E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3111 f98a23272cce2ef8f772cefe1ca9b267 258 Gene3D G3DSA:3.20.20.150 4 254 4.2E-45 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_3111 f98a23272cce2ef8f772cefe1ca9b267 258 Pfam PF01261 Xylose isomerase-like TIM barrel 22 207 4.4E-23 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_3111 f98a23272cce2ef8f772cefe1ca9b267 258 SUPERFAMILY SSF51658 5 254 5.11E-37 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_2049 b9c7acf15d915394fbe3141511e4ff08 280 Pfam PF13349 Putative adhesin 14 230 1.1E-11 T 19-04-2016 IPR025164 Putative adhesin AMED_1966 323d6cfe8836cf5f14bfbba80f4efe97 107 Pfam PF10611 Protein of unknown function (DUF2469) 1 100 1.7E-53 T 19-04-2016 IPR019592 Protein of unknown function DUF2469 AMED_0236 9635e3c73beb120b0289eb8ea838016f 122 Pfam PF12079 Protein of unknown function (DUF3558) 8 117 4.4E-8 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_6673 f6ce54f55382068fbc76cac041805082 349 PANTHER PTHR32332:SF12 4 75 1.7E-96 T 19-04-2016 AMED_6673 f6ce54f55382068fbc76cac041805082 349 PANTHER PTHR32332:SF12 99 348 1.7E-96 T 19-04-2016 AMED_6673 f6ce54f55382068fbc76cac041805082 349 Pfam PF03060 Nitronate monooxygenase 7 334 2.3E-86 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMED_6673 f6ce54f55382068fbc76cac041805082 349 Gene3D G3DSA:3.20.20.70 4 322 1.8E-65 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_6673 f6ce54f55382068fbc76cac041805082 349 SUPERFAMILY SSF51412 4 342 1.45E-54 T 19-04-2016 AMED_6673 f6ce54f55382068fbc76cac041805082 349 PANTHER PTHR32332 4 75 1.7E-96 T 19-04-2016 AMED_6673 f6ce54f55382068fbc76cac041805082 349 PANTHER PTHR32332 99 348 1.7E-96 T 19-04-2016 AMED_1030 b91e114e301b619281506b6caacf7ec6 310 SMART SM00880 35 292 1.1E-53 T 19-04-2016 IPR007899 CHAD domain AMED_1030 b91e114e301b619281506b6caacf7ec6 310 Pfam PF05235 CHAD domain 36 261 4.7E-51 T 19-04-2016 IPR007899 CHAD domain AMED_1030 b91e114e301b619281506b6caacf7ec6 310 PANTHER PTHR39339 32 307 3.0E-21 T 19-04-2016 AMED_1030 b91e114e301b619281506b6caacf7ec6 310 PANTHER PTHR39339:SF1 32 307 3.0E-21 T 19-04-2016 AMED_5871 b99f140ec77981d7aafd890e1d833494 276 SUPERFAMILY SSF47090 58 120 7.85E-7 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_5871 b99f140ec77981d7aafd890e1d833494 276 Gene3D G3DSA:1.10.101.10 61 125 1.7E-5 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_5844 e8e001e697e384869e907b0785263d23 284 SUPERFAMILY SSF53335 20 251 1.82E-35 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5844 e8e001e697e384869e907b0785263d23 284 PIRSF PIRSF017393 1 284 1.0E-76 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_5844 e8e001e697e384869e907b0785263d23 284 Pfam PF04672 S-adenosyl methyltransferase 13 279 4.0E-73 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_5844 e8e001e697e384869e907b0785263d23 284 Gene3D G3DSA:3.40.50.150 9 284 2.8E-92 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 7.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 7.7E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 SUPERFAMILY SSF46689 7 80 1.55E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 Gene3D G3DSA:1.10.357.10 5 177 1.3E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 PANTHER PTHR30328 9 190 4.2E-24 T 19-04-2016 AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 6.5E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8172 9171a944f95338a52fb5b67f0d454a11 195 SUPERFAMILY SSF48498 85 189 3.41E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 PANTHER PTHR22946 1 246 1.2E-16 T 19-04-2016 AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 Gene3D G3DSA:3.40.50.1820 11 150 6.7E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 Gene3D G3DSA:3.40.50.1820 198 274 6.7E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 SUPERFAMILY SSF53474 7 249 9.48E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 98 128 - T 19-04-2016 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 PANTHER PTHR22946:SF0 1 246 1.2E-16 T 19-04-2016 AMED_8673 89dfa53dbd7ab534edb356d386be6d45 424 Pfam PF12146 Serine aminopeptidase, S33 47 148 2.5E-8 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_2262 17b8128e03ddcf04f442886921eeed7d 230 PANTHER PTHR11624:SF86 15 180 2.2E-34 T 19-04-2016 AMED_2262 17b8128e03ddcf04f442886921eeed7d 230 SUPERFAMILY SSF52518 25 225 2.32E-45 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2262 17b8128e03ddcf04f442886921eeed7d 230 PANTHER PTHR11624 15 180 2.2E-34 T 19-04-2016 IPR033247 Transketolase family AMED_2262 17b8128e03ddcf04f442886921eeed7d 230 Gene3D G3DSA:3.40.50.970 25 224 3.1E-47 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_2262 17b8128e03ddcf04f442886921eeed7d 230 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 25 215 1.7E-23 T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMED_1909 70feb3d2e4a8860f3b14864987f7cf6b 166 SUPERFAMILY SSF55729 3 163 4.15E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1909 70feb3d2e4a8860f3b14864987f7cf6b 166 Pfam PF13302 Acetyltransferase (GNAT) domain 8 136 2.3E-17 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1909 70feb3d2e4a8860f3b14864987f7cf6b 166 PANTHER PTHR13256 2 164 6.1E-24 T 19-04-2016 AMED_1909 70feb3d2e4a8860f3b14864987f7cf6b 166 Gene3D G3DSA:3.40.630.30 2 164 3.6E-36 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_3526 d340d80545e8312955885bf1be648754 243 PANTHER PTHR38133 7 241 3.4E-43 T 19-04-2016 AMED_3526 d340d80545e8312955885bf1be648754 243 PANTHER PTHR38133:SF1 7 241 3.4E-43 T 19-04-2016 AMED_4540 08734839a495512e85249540d7716b8c 346 PANTHER PTHR32196 25 343 1.0E-105 T 19-04-2016 AMED_4540 08734839a495512e85249540d7716b8c 346 PANTHER PTHR32196:SF29 25 343 1.0E-105 T 19-04-2016 AMED_4540 08734839a495512e85249540d7716b8c 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 324 1.3E-43 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_6828 597cfda4ba33c0dc46465124f24b38e2 958 Gene3D G3DSA:1.25.40.10 204 344 5.6E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 PANTHER PTHR30055 24 253 4.4E-40 T 19-04-2016 AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Pfam PF00440 Bacterial regulatory proteins, tetR family 41 85 1.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 PANTHER PTHR30055:SF93 24 253 4.4E-40 T 19-04-2016 AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Gene3D G3DSA:1.10.357.10 27 255 1.3E-52 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 103 254 1.3E-19 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 SUPERFAMILY SSF48498 106 255 4.78E-23 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7667 b0572fce5ed6e2b5ba393a4eb04e0b77 256 SUPERFAMILY SSF46689 29 91 4.09E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0186 afe632c82f9d0314cbcd731f8aa293a5 116 SUPERFAMILY SSF55486 4 115 4.0E-40 T 19-04-2016 AMED_0186 afe632c82f9d0314cbcd731f8aa293a5 116 PANTHER PTHR41522 1 116 2.1E-40 T 19-04-2016 AMED_0186 afe632c82f9d0314cbcd731f8aa293a5 116 Pfam PF06262 Zinicin-like metallopeptidase 29 115 3.3E-33 T 19-04-2016 IPR010428 Zinicin-like metallopeptidase AMED_5095 8bdf7df0e8fe78c6f4d2402220fa065e 403 SUPERFAMILY SSF103473 26 396 1.11E-48 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5095 8bdf7df0e8fe78c6f4d2402220fa065e 403 Gene3D G3DSA:1.20.1250.20 27 210 3.4E-25 T 19-04-2016 AMED_5095 8bdf7df0e8fe78c6f4d2402220fa065e 403 Pfam PF07690 Major Facilitator Superfamily 29 235 1.3E-27 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5095 8bdf7df0e8fe78c6f4d2402220fa065e 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_5095 8bdf7df0e8fe78c6f4d2402220fa065e 403 Gene3D G3DSA:1.20.1250.20 215 397 4.5E-12 T 19-04-2016 AMED_5095 8bdf7df0e8fe78c6f4d2402220fa065e 403 PANTHER PTHR23501 27 403 1.5E-25 T 19-04-2016 AMED_4739 75c541bd850a21cec3366d28d7be22d3 113 Gene3D G3DSA:1.10.10.10 2 96 3.5E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4739 75c541bd850a21cec3366d28d7be22d3 113 SUPERFAMILY SSF46785 2 96 1.5E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4739 75c541bd850a21cec3366d28d7be22d3 113 Pfam PF01638 HxlR-like helix-turn-helix 8 95 1.2E-23 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_4739 75c541bd850a21cec3366d28d7be22d3 113 PANTHER PTHR33204 1 97 6.5E-26 T 19-04-2016 AMED_9221 947f4ccab054ea571e92b3477099bdd7 222 PANTHER PTHR11695:SF605 6 222 3.2E-36 T 19-04-2016 AMED_9221 947f4ccab054ea571e92b3477099bdd7 222 Gene3D G3DSA:3.40.50.720 54 191 5.6E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9221 947f4ccab054ea571e92b3477099bdd7 222 Pfam PF13602 Zinc-binding dehydrogenase 91 220 1.8E-20 T 19-04-2016 AMED_9221 947f4ccab054ea571e92b3477099bdd7 222 PANTHER PTHR11695 6 222 3.2E-36 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_9221 947f4ccab054ea571e92b3477099bdd7 222 SUPERFAMILY SSF51735 24 197 1.22E-26 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9221 947f4ccab054ea571e92b3477099bdd7 222 Gene3D G3DSA:3.90.180.10 5 53 3.1E-4 T 19-04-2016 IPR011032 GroES-like AMED_3195 dbf6729b58aff42b15ade3c68a612942 604 Pfam PF07940 Heparinase II/III-like protein 397 520 1.3E-7 T 19-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 AMED_3195 dbf6729b58aff42b15ade3c68a612942 604 SUPERFAMILY SSF48230 95 323 8.79E-10 T 19-04-2016 IPR008929 Chondroitin AC/alginate lyase AMED_1218 f46ece112ecfa55009aa167e4407097a 209 SUPERFAMILY SSF89392 25 183 2.08E-21 T 19-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMED_1218 f46ece112ecfa55009aa167e4407097a 209 ProDom PD017293 LIPOPROTEIN MEMBRANE PRECURSOR PALMITATE SIGNAL ANTIGEN LPRG LPPX P27 LPRA 14 177 8.0E-11 T 19-04-2016 IPR009830 LppX/LprAFG lipoprotein family AMED_1218 f46ece112ecfa55009aa167e4407097a 209 Pfam PF07161 Protein of unknown function (DUF1396) 31 204 3.7E-21 T 19-04-2016 IPR009830 LppX/LprAFG lipoprotein family AMED_1223 0adcffa78bd6c537adbe19a420105521 140 Gene3D G3DSA:3.40.250.10 22 130 9.5E-22 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1223 0adcffa78bd6c537adbe19a420105521 140 SUPERFAMILY SSF52821 23 130 1.19E-24 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1223 0adcffa78bd6c537adbe19a420105521 140 SMART SM00450 27 127 1.2E-13 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_1223 0adcffa78bd6c537adbe19a420105521 140 Pfam PF00581 Rhodanese-like domain 29 123 1.4E-12 T 19-04-2016 IPR001763 Rhodanese-like domain AMED_2220 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 PANTHER PTHR10120 249 285 5.7E-27 T 19-04-2016 AMED_2220 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 PANTHER PTHR10120:SF21 249 285 5.7E-27 T 19-04-2016 AMED_2220 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 Pfam PF01435 Peptidase family M48 71 266 2.8E-20 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_2220 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 Gene3D G3DSA:3.30.2010.10 66 152 1.1E-19 T 19-04-2016 AMED_2220 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 PANTHER PTHR10120 57 229 5.7E-27 T 19-04-2016 AMED_2220 070b948dc7d2ae8e4c1cf9ea2be4d4ff 346 PANTHER PTHR10120:SF21 57 229 5.7E-27 T 19-04-2016 AMED_9031 5fd6a88c2302d5d23ee4e7908d1efd0b 218 Pfam PF04892 VanZ like family 54 165 6.9E-16 T 19-04-2016 IPR006976 VanZ-like AMED_9031 5fd6a88c2302d5d23ee4e7908d1efd0b 218 PANTHER PTHR36834 1 171 2.1E-13 T 19-04-2016 AMED_6433 81fc9c880cf882d2118f57b219ea1f9c 601 Gene3D G3DSA:3.40.50.300 195 314 1.0E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6433 81fc9c880cf882d2118f57b219ea1f9c 601 SUPERFAMILY SSF52540 2 313 7.94E-26 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6433 81fc9c880cf882d2118f57b219ea1f9c 601 Gene3D G3DSA:3.40.50.300 2 159 2.1E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2506 e5df2703808aa2f52caee49edddebf14 461 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 265 4.6E-72 T 19-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_2506 e5df2703808aa2f52caee49edddebf14 461 Pfam PF06974 Protein of unknown function (DUF1298) 307 456 2.0E-28 T 19-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_2506 e5df2703808aa2f52caee49edddebf14 461 PANTHER PTHR31650:SF6 1 460 3.1E-153 T 19-04-2016 AMED_2506 e5df2703808aa2f52caee49edddebf14 461 PANTHER PTHR31650 1 460 3.1E-153 T 19-04-2016 AMED_2506 e5df2703808aa2f52caee49edddebf14 461 SUPERFAMILY SSF52777 33 157 6.56E-11 T 19-04-2016 AMED_2506 e5df2703808aa2f52caee49edddebf14 461 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 460 1.6E-147 T 19-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 AMED_0044 d0ed856eecddb1800efcf27b06041958 607 Gene3D G3DSA:3.30.565.10 509 590 1.9E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0044 d0ed856eecddb1800efcf27b06041958 607 PANTHER PTHR24421 99 604 4.7E-56 T 19-04-2016 AMED_0044 d0ed856eecddb1800efcf27b06041958 607 SUPERFAMILY SSF55874 506 588 1.18E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0044 d0ed856eecddb1800efcf27b06041958 607 Pfam PF07730 Histidine kinase 402 469 2.6E-14 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_0044 d0ed856eecddb1800efcf27b06041958 607 PANTHER PTHR24421:SF19 99 604 4.7E-56 T 19-04-2016 AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 Gene3D G3DSA:3.10.310.10 1 155 4.2E-71 T 19-04-2016 AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 SUPERFAMILY SSF54506 1 331 1.69E-116 T 19-04-2016 AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 Pfam PF05544 Proline racemase 10 332 5.1E-129 T 19-04-2016 IPR008794 Proline racemase family AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 PANTHER PTHR33442:SF2 1 333 3.5E-167 T 19-04-2016 AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 PIRSF PIRSF029792 1 333 1.2E-131 T 19-04-2016 IPR008794 Proline racemase family AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 PANTHER PTHR33442 1 333 3.5E-167 T 19-04-2016 AMED_3236 765231b619ba0b3cef42ed224e6cd23d 333 Gene3D G3DSA:3.10.310.10 156 320 6.2E-60 T 19-04-2016 AMED_6445 397928623003ffc73aec0c290f6a4e70 280 SUPERFAMILY SSF49899 62 261 5.93E-26 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_6445 397928623003ffc73aec0c290f6a4e70 280 Pfam PF01828 Peptidase A4 family 65 275 2.5E-31 T 19-04-2016 IPR000250 Peptidase G1 GO:0004190|GO:0006508 AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 Gene3D G3DSA:3.40.640.10 30 272 7.3E-29 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 Pfam PF08348 YheO-like PAS domain 385 483 1.5E-25 T 19-04-2016 IPR013559 YheO-like AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 Pfam PF00266 Aminotransferase class-V 87 335 5.5E-21 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 382 482 4.0E-18 T 19-04-2016 IPR013559 YheO-like AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 PANTHER PTHR35568 365 572 3.9E-39 T 19-04-2016 AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 SUPERFAMILY SSF53383 11 362 7.44E-50 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1503 2fdde0e3928e3d08b06d8804a0bfad33 572 Pfam PF13309 HTH domain 510 568 4.7E-19 T 19-04-2016 AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 PANTHER PTHR24220 7 248 1.9E-91 T 19-04-2016 AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 SMART SM00382 35 215 1.4E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 Pfam PF00005 ABC transporter 27 165 4.1E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 Gene3D G3DSA:3.40.50.300 4 212 1.5E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 SUPERFAMILY SSF52540 5 243 1.04E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_0257 da64c750737b29d45181f69aa96fe1e2 268 PANTHER PTHR24220:SF589 7 248 1.9E-91 T 19-04-2016 AMED_5417 b8f37a18770c23d9ba0ac9cac5352bd8 276 Pfam PF08241 Methyltransferase domain 84 195 1.3E-11 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_5417 b8f37a18770c23d9ba0ac9cac5352bd8 276 Gene3D G3DSA:3.40.50.150 68 202 2.6E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5417 b8f37a18770c23d9ba0ac9cac5352bd8 276 SUPERFAMILY SSF53335 52 232 2.73E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5159 a16297e35fffad9ba9dd2fca05bf96f2 102 Pfam PF14216 Domain of unknown function (DUF4326) 16 96 6.6E-21 T 19-04-2016 IPR025475 Protein of unknown function DUF4326) AMED_5115 1c8f34d72263e212817dbcf138b326f1 283 PANTHER PTHR35010 1 281 1.2E-73 T 19-04-2016 AMED_5115 1c8f34d72263e212817dbcf138b326f1 283 SMART SM00530 9 81 8.6E-10 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_5115 1c8f34d72263e212817dbcf138b326f1 283 SUPERFAMILY SSF47413 29 80 1.1E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5115 1c8f34d72263e212817dbcf138b326f1 283 Gene3D G3DSA:1.10.260.40 4 80 1.9E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5115 1c8f34d72263e212817dbcf138b326f1 283 Pfam PF13560 Helix-turn-helix domain 6 84 1.9E-15 T 19-04-2016 AMED_5115 1c8f34d72263e212817dbcf138b326f1 283 PANTHER PTHR35010:SF2 1 281 1.2E-73 T 19-04-2016 AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 PANTHER PTHR24023:SF591 33 366 1.7E-103 T 19-04-2016 AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 Gene3D G3DSA:3.40.50.10540 3 209 7.4E-96 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 Gene3D G3DSA:3.40.50.10540 294 368 7.4E-96 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 Gene3D G3DSA:3.30.1540.10 224 293 8.2E-11 T 19-04-2016 AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 SUPERFAMILY SSF89796 4 368 1.44E-115 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 Pfam PF02515 CoA-transferase family III 6 356 1.5E-90 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_7191 ef956b6f5a2d66e00871c0b1b87f9a2f 371 PANTHER PTHR24023 33 366 1.7E-103 T 19-04-2016 AMED_5910 4e796afd273db6f3db9249a1cbc87fde 514 Gene3D G3DSA:3.40.50.300 271 487 7.1E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5910 4e796afd273db6f3db9249a1cbc87fde 514 Pfam PF01580 FtsK/SpoIIIE family 251 441 4.4E-10 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMED_5910 4e796afd273db6f3db9249a1cbc87fde 514 SUPERFAMILY SSF52540 251 492 5.84E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3961 afb86bc80f51cc7e415b6d7aeca0bc7d 290 SUPERFAMILY SSF51197 23 287 1.92E-74 T 19-04-2016 AMED_3961 afb86bc80f51cc7e415b6d7aeca0bc7d 290 PANTHER PTHR30468 15 285 1.3E-66 T 19-04-2016 AMED_3961 afb86bc80f51cc7e415b6d7aeca0bc7d 290 Gene3D G3DSA:3.60.130.10 21 286 9.8E-80 T 19-04-2016 AMED_3961 afb86bc80f51cc7e415b6d7aeca0bc7d 290 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 25 280 4.7E-55 T 19-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 AMED_7198 4330e46bbc082851ff15abe419062abc 165 PANTHER PTHR33452 5 128 2.9E-22 T 19-04-2016 AMED_7198 4330e46bbc082851ff15abe419062abc 165 Pfam PF07681 DoxX 9 88 1.4E-14 T 19-04-2016 IPR032808 DoxX family AMED_7198 4330e46bbc082851ff15abe419062abc 165 PANTHER PTHR33452:SF1 5 128 2.9E-22 T 19-04-2016 AMED_6943 0ea44e5268ac7b69f3d9a84b1216fe0d 277 Gene3D G3DSA:1.10.10.10 147 268 2.4E-5 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6943 0ea44e5268ac7b69f3d9a84b1216fe0d 277 SUPERFAMILY SSF46785 171 272 5.57E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 PANTHER PTHR31964 11 168 7.2E-21 T 19-04-2016 AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 Gene3D G3DSA:3.40.50.620 23 169 7.7E-33 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 Pfam PF00582 Universal stress protein family 25 168 9.4E-28 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 SUPERFAMILY SSF52402 24 168 2.01E-28 T 19-04-2016 AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 PRINTS PR01438 Universal stress protein signature 128 140 8.2E-17 T 19-04-2016 IPR006015 Universal stress protein A AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 PRINTS PR01438 Universal stress protein signature 25 43 8.2E-17 T 19-04-2016 IPR006015 Universal stress protein A AMED_1572 10756c26bf4126f5a3c5a37aa85ee612 170 PRINTS PR01438 Universal stress protein signature 146 168 8.2E-17 T 19-04-2016 IPR006015 Universal stress protein A AMED_2797 ec3bbd5eb4dacc79683a7a70ffde4f6e 393 Pfam PF06224 Winged helix DNA-binding domain 31 373 2.0E-59 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_2797 ec3bbd5eb4dacc79683a7a70ffde4f6e 393 PANTHER PTHR38479 3 389 9.8E-67 T 19-04-2016 AMED_2797 ec3bbd5eb4dacc79683a7a70ffde4f6e 393 PANTHER PTHR38479:SF2 3 389 9.8E-67 T 19-04-2016 AMED_2082 0dfac518405fa2c5142b9de66b54c776 231 SUPERFAMILY SSF56784 4 221 7.11E-29 T 19-04-2016 IPR023214 HAD-like domain AMED_2082 0dfac518405fa2c5142b9de66b54c776 231 PANTHER PTHR18901 5 230 1.8E-32 T 19-04-2016 AMED_2082 0dfac518405fa2c5142b9de66b54c776 231 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 187 3.2E-16 T 19-04-2016 AMED_2082 0dfac518405fa2c5142b9de66b54c776 231 PANTHER PTHR18901:SF27 5 230 1.8E-32 T 19-04-2016 AMED_2082 0dfac518405fa2c5142b9de66b54c776 231 Gene3D G3DSA:3.40.50.1000 83 224 1.8E-25 T 19-04-2016 IPR023214 HAD-like domain AMED_0498 b5bb28914d2ebcc5a8a5e6be17616ad2 531 PANTHER PTHR31566 23 525 4.2E-110 T 19-04-2016 AMED_0498 b5bb28914d2ebcc5a8a5e6be17616ad2 531 PANTHER PTHR31566:SF0 23 525 4.2E-110 T 19-04-2016 AMED_0498 b5bb28914d2ebcc5a8a5e6be17616ad2 531 Pfam PF05140 ResB-like family 34 518 5.1E-128 T 19-04-2016 IPR007816 ResB-like domain AMED_7805 5a27e0d6b95d71433a81ea9dbaaf6693 247 Pfam PF00589 Phage integrase family 38 226 2.8E-6 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_7805 5a27e0d6b95d71433a81ea9dbaaf6693 247 SUPERFAMILY SSF56349 111 229 7.95E-20 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_7805 5a27e0d6b95d71433a81ea9dbaaf6693 247 SUPERFAMILY SSF56349 24 76 7.95E-20 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_7805 5a27e0d6b95d71433a81ea9dbaaf6693 247 Gene3D G3DSA:1.10.443.10 112 230 2.0E-21 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_7805 5a27e0d6b95d71433a81ea9dbaaf6693 247 Gene3D G3DSA:1.10.443.10 23 76 2.0E-21 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 Pfam PF03441 FAD binding domain of DNA photolyase 259 443 3.1E-79 T 19-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 PANTHER PTHR11455:SF18 7 443 1.2E-160 T 19-04-2016 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 SUPERFAMILY SSF52425 6 175 5.23E-46 T 19-04-2016 IPR006050 DNA photolyase, N-terminal AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 306 322 2.7E-25 T 19-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 138 154 2.7E-25 T 19-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 326 344 2.7E-25 T 19-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 PRINTS PR00147 DNA photolyase signature 365 379 2.7E-25 T 19-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 Gene3D G3DSA:3.40.50.620 4 157 2.4E-41 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 Gene3D G3DSA:1.25.40.80 191 265 4.9E-33 T 19-04-2016 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 SUPERFAMILY SSF48173 183 446 3.01E-103 T 19-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 PANTHER PTHR11455 7 443 1.2E-160 T 19-04-2016 AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 306 318 - T 19-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 Pfam PF00875 DNA photolyase 7 158 8.5E-42 T 19-04-2016 IPR006050 DNA photolyase, N-terminal AMED_8425 c26b693600a3de46d1c33558b6da42c9 448 Gene3D G3DSA:1.10.579.10 266 446 6.1E-74 T 19-04-2016 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 Pfam PF02875 Mur ligase family, glutamate ligase domain 403 480 1.3E-12 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 Pfam PF08245 Mur ligase middle domain 148 377 3.1E-13 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 Gene3D G3DSA:3.90.190.20 405 548 6.3E-38 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 SUPERFAMILY SSF53244 405 548 1.23E-26 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 Gene3D G3DSA:3.40.1190.10 117 403 3.2E-91 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 PANTHER PTHR11136 122 549 8.3E-127 T 19-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 PANTHER PTHR11136:SF0 122 549 8.3E-127 T 19-04-2016 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 SUPERFAMILY SSF53623 108 397 3.66E-86 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMED_6718 2bccfedac16e47d9e67193e5bef1ced7 551 TIGRFAM TIGR01499 folC: bifunctional protein FolC 126 545 7.3E-102 T 19-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 AMED_1291 e7bcdf4e2109066d5ed053a30ceb9a28 164 Pfam PF02575 YbaB/EbfC DNA-binding family 9 92 9.8E-10 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1291 e7bcdf4e2109066d5ed053a30ceb9a28 164 Gene3D G3DSA:3.30.1310.10 5 105 5.6E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1291 e7bcdf4e2109066d5ed053a30ceb9a28 164 SUPERFAMILY SSF82607 10 103 6.93E-7 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8688 265cc083221ba4b1f76f733f6eba8fac 193 SMART SM00460 76 131 0.0034 T 19-04-2016 IPR002931 Transglutaminase-like AMED_8688 265cc083221ba4b1f76f733f6eba8fac 193 Pfam PF01841 Transglutaminase-like superfamily 30 129 1.6E-13 T 19-04-2016 IPR002931 Transglutaminase-like AMED_8688 265cc083221ba4b1f76f733f6eba8fac 193 SUPERFAMILY SSF54001 25 140 1.4E-21 T 19-04-2016 AMED_5588 4388e85981703c8b9a5ec70c220403a7 389 Pfam PF01594 Domain of unknown function DUF20 41 352 5.4E-58 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_5588 4388e85981703c8b9a5ec70c220403a7 389 PANTHER PTHR21716 22 351 2.3E-51 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_8900 d995e8a8db648a5d6d25b20c48c089b4 309 PANTHER PTHR30465 26 309 8.3E-91 T 19-04-2016 AMED_8900 d995e8a8db648a5d6d25b20c48c089b4 309 Gene3D G3DSA:1.10.3720.10 94 305 5.1E-31 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8900 d995e8a8db648a5d6d25b20c48c089b4 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 308 3.3E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8900 d995e8a8db648a5d6d25b20c48c089b4 309 PANTHER PTHR30465:SF10 26 309 8.3E-91 T 19-04-2016 AMED_8900 d995e8a8db648a5d6d25b20c48c089b4 309 SUPERFAMILY SSF161098 99 289 4.97E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8900 d995e8a8db648a5d6d25b20c48c089b4 309 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 65 8.8E-10 T 19-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMED_8414 efdad312030f813b6d058432c292ac6a 287 Pfam PF08281 Sigma-70, region 4 105 155 9.1E-10 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8414 efdad312030f813b6d058432c292ac6a 287 SUPERFAMILY SSF88946 5 88 6.67E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8414 efdad312030f813b6d058432c292ac6a 287 SUPERFAMILY SSF54427 168 275 2.12E-13 T 19-04-2016 IPR032710 NTF2-like domain AMED_8414 efdad312030f813b6d058432c292ac6a 287 Gene3D G3DSA:3.10.450.50 168 271 2.7E-7 T 19-04-2016 IPR032710 NTF2-like domain AMED_8414 efdad312030f813b6d058432c292ac6a 287 PANTHER PTHR30173 3 286 4.3E-82 T 19-04-2016 AMED_8414 efdad312030f813b6d058432c292ac6a 287 Gene3D G3DSA:1.10.1740.10 5 75 2.1E-13 T 19-04-2016 AMED_8414 efdad312030f813b6d058432c292ac6a 287 SUPERFAMILY SSF88659 101 157 2.62E-10 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8414 efdad312030f813b6d058432c292ac6a 287 Gene3D G3DSA:1.10.10.10 104 157 8.8E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8414 efdad312030f813b6d058432c292ac6a 287 PANTHER PTHR30173:SF11 3 286 4.3E-82 T 19-04-2016 AMED_8414 efdad312030f813b6d058432c292ac6a 287 Pfam PF04542 Sigma-70 region 2 10 73 3.1E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_8414 efdad312030f813b6d058432c292ac6a 287 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 158 8.0E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5015 b968a7f31c5c986825992f33558b7b58 305 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 13 247 3.7E-53 T 19-04-2016 IPR018713 Domain of unknown function DUF2236 AMED_5015 b968a7f31c5c986825992f33558b7b58 305 PANTHER PTHR36151:SF1 3 300 4.3E-155 T 19-04-2016 AMED_5015 b968a7f31c5c986825992f33558b7b58 305 PANTHER PTHR36151 3 300 4.3E-155 T 19-04-2016 AMED_7136 416d281f2661861f7abc82e5e97cf2e0 137 Gene3D G3DSA:3.10.450.50 8 129 8.4E-19 T 19-04-2016 IPR032710 NTF2-like domain AMED_7136 416d281f2661861f7abc82e5e97cf2e0 137 Pfam PF13577 SnoaL-like domain 8 128 9.6E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_7136 416d281f2661861f7abc82e5e97cf2e0 137 SUPERFAMILY SSF54427 5 133 6.82E-21 T 19-04-2016 IPR032710 NTF2-like domain AMED_4745 04666ff5d246177c75f3289d87576acb 939 TIGRFAM TIGR03897 lanti_2_LanM: type 2 lantibiotic biosynthesis protein LanM 49 926 2.9E-139 T 19-04-2016 IPR017146 Type 2 lantibiotic biosynthesis protein LanM AMED_4745 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 744 760 1.7E-15 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 909 926 1.7E-15 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 584 602 1.7E-15 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 855 868 1.7E-15 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 687 702 1.7E-15 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 PRINTS PR01950 LanC-like protein superfamily signature 809 829 1.7E-15 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 Pfam PF13575 Domain of unknown function (DUF4135) 105 483 1.4E-87 T 19-04-2016 IPR025410 Domain of unknown function DUF4135 AMED_4745 04666ff5d246177c75f3289d87576acb 939 SMART SM01260 581 937 5.2E-47 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 Pfam PF05147 Lanthionine synthetase C-like protein 582 936 3.5E-36 T 19-04-2016 IPR007822 Lanthionine synthetase C-like AMED_4745 04666ff5d246177c75f3289d87576acb 939 SUPERFAMILY SSF158745 576 939 1.96E-50 T 19-04-2016 AMED_0975 36115f16c782106c5a8d7a8fa9b2374d 308 PANTHER PTHR10277:SF1 14 308 3.6E-150 T 19-04-2016 AMED_0975 36115f16c782106c5a8d7a8fa9b2374d 308 PANTHER PTHR10277 14 308 3.6E-150 T 19-04-2016 AMED_0975 36115f16c782106c5a8d7a8fa9b2374d 308 Gene3D G3DSA:3.20.20.70 20 303 4.5E-81 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_0975 36115f16c782106c5a8d7a8fa9b2374d 308 Pfam PF00682 HMGL-like 22 289 3.5E-44 T 19-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMED_0975 36115f16c782106c5a8d7a8fa9b2374d 308 SUPERFAMILY SSF51569 18 303 1.81E-66 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 SUPERFAMILY SSF53187 46 311 1.07E-63 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 PANTHER PTHR12147 99 259 1.1E-66 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 PANTHER PTHR12147 277 303 1.1E-66 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 Pfam PF01483 Proprotein convertase P-domain 456 533 1.2E-18 T 19-04-2016 IPR002884 Proprotein convertase, P GO:0004252|GO:0006508 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 Gene3D G3DSA:3.40.630.10 38 314 3.4E-68 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 Pfam PF04389 Peptidase family M28 101 305 1.2E-43 T 19-04-2016 IPR007484 Peptidase M28 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 PANTHER PTHR12147:SF19 99 259 1.1E-66 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 PANTHER PTHR12147:SF19 277 303 1.1E-66 T 19-04-2016 AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 SUPERFAMILY SSF49785 431 534 8.22E-21 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1036 a2268221809b1d0ca5fe25b1db2341b9 534 Gene3D G3DSA:2.60.120.260 423 533 3.8E-16 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_6534 c381d28c817b9ccb439493ea9963ee61 357 SUPERFAMILY SSF81345 22 348 1.57E-72 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_6534 c381d28c817b9ccb439493ea9963ee61 357 PANTHER PTHR30472 22 354 1.6E-98 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_6534 c381d28c817b9ccb439493ea9963ee61 357 Gene3D G3DSA:1.10.3470.10 22 350 2.1E-94 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_6534 c381d28c817b9ccb439493ea9963ee61 357 Pfam PF01032 FecCD transport family 31 348 2.5E-83 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_2864 cfe2d19f90f8df7aa463f5ae11860650 284 PANTHER PTHR30011 9 232 1.7E-52 T 19-04-2016 AMED_2864 cfe2d19f90f8df7aa463f5ae11860650 284 Gene3D G3DSA:3.20.20.30 7 244 1.5E-64 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2864 cfe2d19f90f8df7aa463f5ae11860650 284 Pfam PF00296 Luciferase-like monooxygenase 13 242 4.1E-55 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2864 cfe2d19f90f8df7aa463f5ae11860650 284 SUPERFAMILY SSF51679 8 283 2.65E-62 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5864 07aa584c28262d6641c8b989e67c76b2 204 Pfam PF02517 CAAX protease self-immunity 103 180 3.1E-7 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_2624 0e89542e950d2284b7a31198fb9af91a 482 PANTHER PTHR33744 2 476 1.1E-30 T 19-04-2016 AMED_2624 0e89542e950d2284b7a31198fb9af91a 482 Pfam PF07905 Purine catabolism regulatory protein-like family 20 117 3.7E-23 T 19-04-2016 IPR012914 Purine catabolism PurC-like domain AMED_2624 0e89542e950d2284b7a31198fb9af91a 482 Pfam PF13556 PucR C-terminal helix-turn-helix domain 419 476 6.4E-20 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_2624 0e89542e950d2284b7a31198fb9af91a 482 PANTHER PTHR33744:SF3 2 476 1.1E-30 T 19-04-2016 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 SUPERFAMILY SSF51905 38 115 2.27E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 SUPERFAMILY SSF51905 148 260 2.27E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 PANTHER PTHR23023:SF1 2 109 2.2E-57 T 19-04-2016 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 PANTHER PTHR23023:SF1 144 284 2.2E-57 T 19-04-2016 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 PANTHER PTHR23023 2 109 2.2E-57 T 19-04-2016 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 PANTHER PTHR23023 144 284 2.2E-57 T 19-04-2016 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 SUPERFAMILY SSF51905 10 47 1.52E-5 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 Gene3D G3DSA:3.50.50.60 3 107 5.9E-22 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7216 863210be4f2eb66512610f0b8d5d7ca2 353 Pfam PF00743 Flavin-binding monooxygenase-like 7 105 6.2E-6 T 19-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_8864 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Pfam PF13535 ATP-grasp domain 147 288 1.8E-11 T 19-04-2016 AMED_8864 81a3129ca2735d58b2e7e20fa9f4c9fc 413 SUPERFAMILY SSF56059 101 314 1.22E-31 T 19-04-2016 AMED_8864 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Gene3D G3DSA:3.30.470.20 106 318 2.6E-26 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_8864 81a3129ca2735d58b2e7e20fa9f4c9fc 413 Gene3D G3DSA:3.40.50.20 8 69 1.1E-5 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_6665 01401f93d3cacfb71634963a790674f3 167 SUPERFAMILY SSF54909 20 123 2.23E-13 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_6665 01401f93d3cacfb71634963a790674f3 167 Pfam PF11695 Domain of unknown function (DUF3291) 6 148 4.5E-57 T 19-04-2016 IPR021708 Domain of unknown function DUF3291 AMED_1252 dbc2026b7040683a7c42a8099075bf72 297 Pfam PF02687 FtsX-like permease family 179 291 1.2E-11 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_1252 dbc2026b7040683a7c42a8099075bf72 297 PIRSF PIRSF003097 1 297 3.8E-74 T 19-04-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 AMED_1252 dbc2026b7040683a7c42a8099075bf72 297 PANTHER PTHR30489 131 296 3.9E-25 T 19-04-2016 AMED_0440 3083134aa2a5b30ca8c56d0089e1cca2 144 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 142 5.0E-20 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_0440 3083134aa2a5b30ca8c56d0089e1cca2 144 PIRSF PIRSF017371 1 144 2.4E-57 T 19-04-2016 IPR014488 Uncharacterised conserved protein UCP017371 AMED_0440 3083134aa2a5b30ca8c56d0089e1cca2 144 Gene3D G3DSA:3.30.530.20 5 143 3.5E-6 T 19-04-2016 IPR023393 START-like domain AMED_0440 3083134aa2a5b30ca8c56d0089e1cca2 144 SUPERFAMILY SSF55961 1 143 1.86E-15 T 19-04-2016 AMED_8632 ad034d371cce5c938479c4e3387661d9 244 PANTHER PTHR36852 20 243 1.0E-25 T 19-04-2016 AMED_8632 ad034d371cce5c938479c4e3387661d9 244 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 10 234 4.5E-45 T 19-04-2016 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 AMED_3536 33fb2af1539445e0254498de2d2f2726 472 SUPERFAMILY SSF50939 55 257 1.03E-16 T 19-04-2016 IPR011040 Sialidases AMED_3536 33fb2af1539445e0254498de2d2f2726 472 Gene3D G3DSA:2.120.10.10 149 253 4.4E-12 T 19-04-2016 IPR011040 Sialidases AMED_3536 33fb2af1539445e0254498de2d2f2726 472 Gene3D G3DSA:2.120.10.10 281 443 2.6E-4 T 19-04-2016 IPR011040 Sialidases AMED_3536 33fb2af1539445e0254498de2d2f2726 472 Gene3D G3DSA:2.120.10.10 57 148 2.5E-11 T 19-04-2016 IPR011040 Sialidases AMED_8258 fcc611c57c7c14b2f91f03d29c6b6432 179 Gene3D G3DSA:1.10.357.10 19 177 2.1E-13 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4630 391cdf6dd93bebe44171397b59bd3559 192 Pfam PF12840 Helix-turn-helix domain 9 65 1.6E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4630 391cdf6dd93bebe44171397b59bd3559 192 SUPERFAMILY SSF46785 4 102 1.66E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4630 391cdf6dd93bebe44171397b59bd3559 192 Gene3D G3DSA:1.10.10.10 5 66 1.1E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1384 9f71cd8404f3a09b10a36772fa408590 134 SUPERFAMILY SSF69754 7 92 1.44E-5 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_1586 47c9ef370a6b3c4e9be3491040671fc0 574 PANTHER PTHR11819:SF159 3 206 9.4E-90 T 19-04-2016 AMED_1586 47c9ef370a6b3c4e9be3491040671fc0 574 PANTHER PTHR11819:SF159 275 548 9.4E-90 T 19-04-2016 AMED_1586 47c9ef370a6b3c4e9be3491040671fc0 574 Pfam PF00474 Sodium:solute symporter family 31 203 9.5E-27 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1586 47c9ef370a6b3c4e9be3491040671fc0 574 Pfam PF00474 Sodium:solute symporter family 302 488 5.5E-12 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1586 47c9ef370a6b3c4e9be3491040671fc0 574 PANTHER PTHR11819 275 548 9.4E-90 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1586 47c9ef370a6b3c4e9be3491040671fc0 574 PANTHER PTHR11819 3 206 9.4E-90 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_2783 6e434ae14a4e14c93f65c5262818b2da 286 Pfam PF04116 Fatty acid hydroxylase superfamily 91 224 4.3E-28 T 19-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 AMED_2783 6e434ae14a4e14c93f65c5262818b2da 286 PANTHER PTHR21624:SF2 8 282 7.3E-96 T 19-04-2016 AMED_2783 6e434ae14a4e14c93f65c5262818b2da 286 PANTHER PTHR21624 8 282 7.3E-96 T 19-04-2016 AMED_6496 62f81dc6c890d34a52bdfe672fc24750 105 Pfam PF02535 ZIP Zinc transporter 27 91 2.2E-7 T 19-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMED_4622 45ebcb069ed0708559f75747bc790e71 242 SUPERFAMILY SSF89796 2 235 1.7E-58 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4622 45ebcb069ed0708559f75747bc790e71 242 Gene3D G3DSA:3.30.1540.10 72 155 1.1E-26 T 19-04-2016 AMED_4622 45ebcb069ed0708559f75747bc790e71 242 Pfam PF02515 CoA-transferase family III 2 222 2.3E-51 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_4622 45ebcb069ed0708559f75747bc790e71 242 Gene3D G3DSA:3.40.50.10540 2 66 3.6E-36 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4622 45ebcb069ed0708559f75747bc790e71 242 Gene3D G3DSA:3.40.50.10540 156 241 3.6E-36 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_8731 1bf13ae15d13b7e20065720691e59457 193 TIGRFAM TIGR03086 TIGR03086: TIGR03086 family protein 7 183 1.5E-37 T 19-04-2016 IPR017520 Conserved hypothetical protein CHP03086 AMED_8731 1bf13ae15d13b7e20065720691e59457 193 SUPERFAMILY SSF109854 4 132 2.7E-14 T 19-04-2016 AMED_8731 1bf13ae15d13b7e20065720691e59457 193 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 14 127 6.7E-10 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_8731 1bf13ae15d13b7e20065720691e59457 193 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 6 183 5.2E-18 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_7271 7616ace7335e44a553ab97a36958ce83 311 SUPERFAMILY SSF56059 122 296 2.16E-43 T 19-04-2016 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 Gene3D G3DSA:3.30.1490.20 136 190 1.7E-16 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 123 292 2.7E-54 T 19-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 Gene3D G3DSA:3.30.470.20 191 294 2.8E-37 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 SUPERFAMILY SSF52440 2 120 3.74E-31 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_7271 7616ace7335e44a553ab97a36958ce83 311 Gene3D G3DSA:3.40.50.20 2 128 9.3E-38 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_7271 7616ace7335e44a553ab97a36958ce83 311 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 302 6.8E-96 T 19-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 PANTHER PTHR21621 1 311 1.6E-88 T 19-04-2016 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 Hamap MF_00162 Glutathione synthetase [gshB]. 1 311 104.576 T 19-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 PANTHER PTHR21621:SF4 1 311 1.6E-88 T 19-04-2016 AMED_7271 7616ace7335e44a553ab97a36958ce83 311 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 119 7.5E-32 T 19-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 SUPERFAMILY SSF46689 6 87 1.4E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 5.2E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.6E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 PANTHER PTHR30328:SF29 5 193 1.8E-36 T 19-04-2016 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 PANTHER PTHR30328 5 193 1.8E-36 T 19-04-2016 AMED_2891 36119fd166f7e0671c30ab3854cd2ad0 200 Gene3D G3DSA:1.10.357.10 7 196 7.6E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5270 44cc3a6c42fdd6341ee7883343d41a93 145 SMART SM00960 12 102 1.6E-26 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_5270 44cc3a6c42fdd6341ee7883343d41a93 145 SUPERFAMILY SSF103196 7 129 4.36E-27 T 19-04-2016 AMED_5270 44cc3a6c42fdd6341ee7883343d41a93 145 Pfam PF03259 Roadblock/LC7 domain 12 102 3.4E-17 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_5270 44cc3a6c42fdd6341ee7883343d41a93 145 PANTHER PTHR36222 1 141 1.2E-37 T 19-04-2016 AMED_5270 44cc3a6c42fdd6341ee7883343d41a93 145 Gene3D G3DSA:3.30.450.30 9 126 1.3E-21 T 19-04-2016 AMED_7201 331853664f72434433ea6d8f4e57b71f 255 SUPERFAMILY SSF52096 1 226 9.96E-56 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7201 331853664f72434433ea6d8f4e57b71f 255 PANTHER PTHR11941 1 225 2.1E-44 T 19-04-2016 AMED_7201 331853664f72434433ea6d8f4e57b71f 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 223 6.9E-37 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_7201 331853664f72434433ea6d8f4e57b71f 255 Gene3D G3DSA:3.90.226.10 1 226 9.1E-55 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3529 c0130ddede247fe8d70e47c7a6bd3fda 704 Gene3D G3DSA:2.160.20.20 353 587 1.3E-8 T 19-04-2016 IPR012332 P22 tailspike C-terminal domain-like AMED_3529 c0130ddede247fe8d70e47c7a6bd3fda 704 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 407 436 1.4E-6 T 19-04-2016 IPR013425 Autotransporter-associated beta strand repeat AMED_3529 c0130ddede247fe8d70e47c7a6bd3fda 704 Pfam PF12951 Passenger-associated-transport-repeat 503 533 2.1E-5 T 19-04-2016 IPR013425 Autotransporter-associated beta strand repeat AMED_3529 c0130ddede247fe8d70e47c7a6bd3fda 704 Pfam PF12951 Passenger-associated-transport-repeat 408 436 7.1E-5 T 19-04-2016 IPR013425 Autotransporter-associated beta strand repeat AMED_1176 48b146287789c9bfa504356513bed76f 413 PANTHER PTHR10283 13 409 3.8E-64 T 19-04-2016 AMED_1176 48b146287789c9bfa504356513bed76f 413 PANTHER PTHR10283:SF21 13 409 3.8E-64 T 19-04-2016 AMED_1176 48b146287789c9bfa504356513bed76f 413 Pfam PF02040 Arsenical pump membrane protein 16 377 3.5E-26 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_1176 48b146287789c9bfa504356513bed76f 413 PRINTS PR00758 Arsenical pump membrane protein signature 106 130 1.4E-13 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_1176 48b146287789c9bfa504356513bed76f 413 PRINTS PR00758 Arsenical pump membrane protein signature 351 376 1.4E-13 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_1176 48b146287789c9bfa504356513bed76f 413 PRINTS PR00758 Arsenical pump membrane protein signature 179 202 1.4E-13 T 19-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMED_6948 f7676f06d209f94568f36a633d75da92 243 SUPERFAMILY SSF48498 90 234 5.89E-13 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6948 f7676f06d209f94568f36a633d75da92 243 Gene3D G3DSA:1.10.357.10 20 236 1.2E-34 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6948 f7676f06d209f94568f36a633d75da92 243 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 7.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6948 f7676f06d209f94568f36a633d75da92 243 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 84 151 1.2E-4 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_6948 f7676f06d209f94568f36a633d75da92 243 SUPERFAMILY SSF46689 23 81 1.64E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 223 265 - T 19-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 SMART SM00342 186 269 9.2E-15 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 Gene3D G3DSA:1.10.10.60 168 222 7.9E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 PANTHER PTHR11019 39 274 3.1E-20 T 19-04-2016 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 Gene3D G3DSA:1.10.10.60 223 270 4.2E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 Pfam PF12833 Helix-turn-helix domain 192 270 1.0E-18 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 PANTHER PTHR11019:SF75 39 274 3.1E-20 T 19-04-2016 AMED_4557 6490d68f54210a3f4f5b7a5a53218781 274 SUPERFAMILY SSF46689 222 270 1.41E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2898 51837134ea45c47ab588a72a4d368b44 320 SUPERFAMILY SSF51197 3 315 4.88E-77 T 19-04-2016 AMED_2898 51837134ea45c47ab588a72a4d368b44 320 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 5 130 4.6E-27 T 19-04-2016 IPR026992 Non-haem dioxygenase N-terminal domain AMED_2898 51837134ea45c47ab588a72a4d368b44 320 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 191 282 6.6E-15 T 19-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AMED_2898 51837134ea45c47ab588a72a4d368b44 320 PANTHER PTHR10209:SF68 4 320 2.5E-77 T 19-04-2016 AMED_2898 51837134ea45c47ab588a72a4d368b44 320 PANTHER PTHR10209 4 320 2.5E-77 T 19-04-2016 AMED_2898 51837134ea45c47ab588a72a4d368b44 320 Gene3D G3DSA:2.60.120.330 3 316 2.4E-82 T 19-04-2016 IPR027443 Isopenicillin N synthase-like AMED_0288 ab4a017fdf8070ff6743605644d0515a 139 SUPERFAMILY SSF55874 48 136 2.41E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0288 ab4a017fdf8070ff6743605644d0515a 139 Gene3D G3DSA:3.30.565.10 35 134 1.4E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_0288 ab4a017fdf8070ff6743605644d0515a 139 Pfam PF13581 Histidine kinase-like ATPase domain 22 131 1.5E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7933 0eed5d87aacec67b1b91ceb42d96e291 164 PANTHER PTHR34109:SF1 7 139 3.7E-24 T 19-04-2016 AMED_7933 0eed5d87aacec67b1b91ceb42d96e291 164 SUPERFAMILY SSF54593 8 127 1.17E-22 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7933 0eed5d87aacec67b1b91ceb42d96e291 164 PANTHER PTHR34109 7 139 3.7E-24 T 19-04-2016 AMED_7933 0eed5d87aacec67b1b91ceb42d96e291 164 Gene3D G3DSA:3.10.180.10 8 140 1.2E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7933 0eed5d87aacec67b1b91ceb42d96e291 164 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 124 1.7E-8 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 Pfam PF07690 Major Facilitator Superfamily 28 427 9.1E-47 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 Gene3D G3DSA:1.20.1250.20 24 204 7.1E-28 T 19-04-2016 AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 Gene3D G3DSA:1.20.1250.20 290 468 1.2E-9 T 19-04-2016 AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 PANTHER PTHR23501:SF26 23 464 3.5E-161 T 19-04-2016 AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 PANTHER PTHR23501 23 464 3.5E-161 T 19-04-2016 AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 SUPERFAMILY SSF103473 20 212 1.31E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0111 ffbd8759aadedb3f37e64591c7b87d5c 474 SUPERFAMILY SSF103473 263 469 1.31E-58 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8863 4ec052a13200b57ea24654e34fa21e29 279 Pfam PF00535 Glycosyl transferase family 2 2 117 4.5E-16 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_8863 4ec052a13200b57ea24654e34fa21e29 279 PANTHER PTHR10859 1 224 1.5E-27 T 19-04-2016 AMED_8863 4ec052a13200b57ea24654e34fa21e29 279 SUPERFAMILY SSF53448 1 154 4.29E-19 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_8863 4ec052a13200b57ea24654e34fa21e29 279 PANTHER PTHR10859:SF49 1 224 1.5E-27 T 19-04-2016 AMED_8863 4ec052a13200b57ea24654e34fa21e29 279 Gene3D G3DSA:3.90.550.10 1 117 2.6E-12 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1050 5670d53b254067e2a07f112acce29610 281 Pfam PF00535 Glycosyl transferase family 2 10 117 6.9E-10 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_1050 5670d53b254067e2a07f112acce29610 281 SUPERFAMILY SSF53448 9 244 6.88E-54 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1050 5670d53b254067e2a07f112acce29610 281 Gene3D G3DSA:3.90.550.10 9 131 1.9E-9 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_1050 5670d53b254067e2a07f112acce29610 281 PANTHER PTHR10859:SF99 8 180 7.2E-27 T 19-04-2016 AMED_1050 5670d53b254067e2a07f112acce29610 281 PANTHER PTHR10859 8 180 7.2E-27 T 19-04-2016 AMED_0302 1ac0cbdbe34d8db8df8aa458792716d3 202 Pfam PF13460 NAD(P)H-binding 7 190 1.8E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0302 1ac0cbdbe34d8db8df8aa458792716d3 202 PANTHER PTHR15020 1 201 5.6E-41 T 19-04-2016 AMED_0302 1ac0cbdbe34d8db8df8aa458792716d3 202 Gene3D G3DSA:3.40.50.720 1 200 1.5E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0302 1ac0cbdbe34d8db8df8aa458792716d3 202 SUPERFAMILY SSF51735 1 200 1.58E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7152 e4f954941c158e38283bb67fe91da9c7 213 Pfam PF13460 NAD(P)H-binding 7 201 1.3E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7152 e4f954941c158e38283bb67fe91da9c7 213 PANTHER PTHR15020 1 207 3.2E-34 T 19-04-2016 AMED_7152 e4f954941c158e38283bb67fe91da9c7 213 SUPERFAMILY SSF51735 1 212 2.59E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7152 e4f954941c158e38283bb67fe91da9c7 213 Gene3D G3DSA:3.40.50.720 1 212 9.2E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0084 c8b97ad83b5d7279a0dbd48d37d1b03d 394 Pfam PF01168 Alanine racemase, N-terminal domain 21 267 1.9E-16 T 19-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 AMED_0084 c8b97ad83b5d7279a0dbd48d37d1b03d 394 Gene3D G3DSA:3.20.20.10 23 188 1.3E-6 T 19-04-2016 IPR029066 PLP-binding barrel AMED_0084 c8b97ad83b5d7279a0dbd48d37d1b03d 394 SUPERFAMILY SSF51419 22 270 4.58E-23 T 19-04-2016 IPR029066 PLP-binding barrel AMED_5567 38209b8016575990f706153e31f66d37 176 PANTHER PTHR33164:SF1 10 164 5.3E-25 T 19-04-2016 AMED_5567 38209b8016575990f706153e31f66d37 176 SMART SM00347 37 140 3.0E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5567 38209b8016575990f706153e31f66d37 176 SUPERFAMILY SSF46785 11 154 1.72E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5567 38209b8016575990f706153e31f66d37 176 PANTHER PTHR33164 10 164 5.3E-25 T 19-04-2016 AMED_5567 38209b8016575990f706153e31f66d37 176 Gene3D G3DSA:1.10.10.10 10 156 5.0E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5567 38209b8016575990f706153e31f66d37 176 Pfam PF12802 MarR family 44 102 1.6E-10 T 19-04-2016 AMED_1304 9df14e3c418f0ba32c48b73be2f562c1 142 Pfam PF09656 Putative transmembrane protein (PGPGW) 9 60 8.2E-14 T 19-04-2016 IPR019099 Uncharacterised protein family PGPGW, transmembrane AMED_8427 c3b12a9532fe448bf5ea4188a4c15d9a 313 SUPERFAMILY SSF53613 2 305 7.02E-61 T 19-04-2016 IPR029056 Ribokinase-like AMED_8427 c3b12a9532fe448bf5ea4188a4c15d9a 313 Pfam PF00294 pfkB family carbohydrate kinase 30 304 3.1E-42 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_8427 c3b12a9532fe448bf5ea4188a4c15d9a 313 Gene3D G3DSA:3.40.1190.20 2 309 2.6E-61 T 19-04-2016 IPR029056 Ribokinase-like AMED_8427 c3b12a9532fe448bf5ea4188a4c15d9a 313 PANTHER PTHR10584:SF161 2 305 9.8E-69 T 19-04-2016 AMED_8427 c3b12a9532fe448bf5ea4188a4c15d9a 313 PANTHER PTHR10584 2 305 9.8E-69 T 19-04-2016 AMED_8427 c3b12a9532fe448bf5ea4188a4c15d9a 313 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_3613 52e74211db338b7ab26447408714d33a 80 Gene3D G3DSA:1.10.287.910 7 49 6.3E-4 T 19-04-2016 IPR021091 Mercury ion transport, MerF AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 Gene3D G3DSA:1.50.10.10 32 399 4.4E-92 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 252 263 2.5E-21 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 209 226 2.5E-21 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 381 395 2.5E-21 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 144 162 2.5E-21 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 282 291 2.5E-21 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 PRINTS PR00735 Glycosyl hydrolase family 8 signature 82 95 2.5E-21 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 Pfam PF01270 Glycosyl hydrolases family 8 46 392 2.5E-26 T 19-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMED_1498 b688c40e9f52ed195a0b374ef26f87c0 401 SUPERFAMILY SSF48208 31 398 1.9E-79 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_5780 6c05421e40779841f489e7c4f81b8f3b 202 PANTHER PTHR13887:SF27 50 170 2.7E-18 T 19-04-2016 AMED_5780 6c05421e40779841f489e7c4f81b8f3b 202 PANTHER PTHR13887 50 170 2.7E-18 T 19-04-2016 AMED_5780 6c05421e40779841f489e7c4f81b8f3b 202 SUPERFAMILY SSF52833 1 197 2.46E-20 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_5780 6c05421e40779841f489e7c4f81b8f3b 202 Gene3D G3DSA:1.10.472.60 43 162 2.8E-27 T 19-04-2016 IPR023169 UPF0413, central domain AMED_8512 fd055962ea59e5d9e90c9c29113ccc00 255 Gene3D G3DSA:1.10.3720.10 4 245 7.9E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8512 fd055962ea59e5d9e90c9c29113ccc00 255 TIGRFAM TIGR01581 Mo_ABC_porter: NifC-like ABC-type porter 20 242 8.9E-72 T 19-04-2016 IPR006469 NifC-like ABC-type porter GO:0005215|GO:0006810|GO:0016020 AMED_8512 fd055962ea59e5d9e90c9c29113ccc00 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 242 4.1E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8512 fd055962ea59e5d9e90c9c29113ccc00 255 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 43 245 4.8E-63 T 19-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AMED_8512 fd055962ea59e5d9e90c9c29113ccc00 255 SUPERFAMILY SSF161098 3 245 8.13E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8512 fd055962ea59e5d9e90c9c29113ccc00 255 PANTHER PTHR30183 1 246 3.6E-68 T 19-04-2016 AMED_0231 8c8de3088266489311346fd2206fca3c 106 Pfam PF04138 GtrA-like protein 9 98 4.8E-14 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_8695 8227d29ab4270f3ab9daf894c6c0909c 402 PANTHER PTHR35791 4 402 1.6E-55 T 19-04-2016 AMED_8695 8227d29ab4270f3ab9daf894c6c0909c 402 PANTHER PTHR35791:SF1 4 402 1.6E-55 T 19-04-2016 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 PANTHER PTHR11735:SF11 1 131 1.9E-33 T 19-04-2016 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 SUPERFAMILY SSF53067 2 105 7.77E-22 T 19-04-2016 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 205 1.5E-52 T 19-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 PANTHER PTHR11735 1 131 1.9E-33 T 19-04-2016 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 Pfam PF00814 Glycoprotease family 37 138 3.0E-25 T 19-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 Gene3D G3DSA:3.30.420.40 2 137 6.9E-37 T 19-04-2016 AMED_0747 ce06fee2f711e2ef50a5a651cf2a5a5c 221 SUPERFAMILY SSF53067 113 203 1.42E-10 T 19-04-2016 AMED_8141 4eee48d31d45749116348e4286d130b4 305 Gene3D G3DSA:3.90.1200.10 113 277 1.5E-33 T 19-04-2016 AMED_8141 4eee48d31d45749116348e4286d130b4 305 PANTHER PTHR21310:SF14 15 278 3.7E-42 T 19-04-2016 AMED_8141 4eee48d31d45749116348e4286d130b4 305 PANTHER PTHR21310 15 278 3.7E-42 T 19-04-2016 AMED_8141 4eee48d31d45749116348e4286d130b4 305 SUPERFAMILY SSF56112 26 277 2.51E-47 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8141 4eee48d31d45749116348e4286d130b4 305 Pfam PF01636 Phosphotransferase enzyme family 41 267 1.3E-31 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_6626 1d2ed950b83159aedb6960cd776db738 122 PANTHER PTHR23089:SF2 1 114 2.5E-39 T 19-04-2016 AMED_6626 1d2ed950b83159aedb6960cd776db738 122 Gene3D G3DSA:3.30.428.10 4 112 6.1E-32 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_6626 1d2ed950b83159aedb6960cd776db738 122 PRINTS PR00332 Histidine triad family signature 98 108 2.3E-16 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_6626 1d2ed950b83159aedb6960cd776db738 122 PRINTS PR00332 Histidine triad family signature 30 48 2.3E-16 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_6626 1d2ed950b83159aedb6960cd776db738 122 PRINTS PR00332 Histidine triad family signature 9 25 2.3E-16 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_6626 1d2ed950b83159aedb6960cd776db738 122 SUPERFAMILY SSF54197 6 111 3.56E-29 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_6626 1d2ed950b83159aedb6960cd776db738 122 Pfam PF01230 HIT domain 16 111 4.6E-25 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_6626 1d2ed950b83159aedb6960cd776db738 122 PANTHER PTHR23089 1 114 2.5E-39 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 SUPERFAMILY SSF56281 5 294 4.72E-64 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 Gene3D G3DSA:3.60.15.10 5 299 5.2E-74 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 Hamap MF_01818 Ribonuclease BN [rbn]. 4 295 30.5 T 19-04-2016 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 PANTHER PTHR12553 5 151 1.1E-64 T 19-04-2016 AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 PANTHER PTHR12553 167 302 1.1E-64 T 19-04-2016 AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 Pfam PF12706 Beta-lactamase superfamily domain 193 262 6.8E-9 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1471 7e815bc995f492e5e3d76be8d682df3e 304 Pfam PF00753 Metallo-beta-lactamase superfamily 21 116 1.7E-14 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 SUPERFAMILY SSF53383 8 385 1.01E-96 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 PIRSF PIRSF000390 3 386 1.1E-101 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 Gene3D G3DSA:3.90.1150.10 251 387 2.7E-53 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 371 2.3E-116 T 19-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 PANTHER PTHR30244 1 328 7.1E-65 T 19-04-2016 AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 Gene3D G3DSA:3.40.640.10 11 250 4.8E-68 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0627 db6cded2747eed4cb711118c8d7e1309 388 PANTHER PTHR30244:SF16 1 328 7.1E-65 T 19-04-2016 AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 Gene3D G3DSA:3.40.50.720 5 245 3.5E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 212 1.3E-10 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 Pfam PF08338 Domain of unknown function (DUF1731) 249 294 1.6E-17 T 19-04-2016 IPR013549 Domain of unknown function DUF1731 AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 4 292 1.3E-87 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 SUPERFAMILY SSF51735 5 291 1.48E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 PANTHER PTHR11092 5 297 1.2E-109 T 19-04-2016 IPR010099 Epimerase family protein SDR39U1 AMED_3524 1f3561cf5773b7b78e9dce1a006d1de4 297 PANTHER PTHR11092:SF0 5 297 1.2E-109 T 19-04-2016 AMED_2869 bb14b3be922d021d3d00ddee3a287b56 251 SUPERFAMILY SSF53474 11 222 5.75E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2869 bb14b3be922d021d3d00ddee3a287b56 251 Pfam PF12146 Serine aminopeptidase, S33 74 152 8.7E-10 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_2869 bb14b3be922d021d3d00ddee3a287b56 251 Gene3D G3DSA:3.40.50.1820 16 222 1.3E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3825 7b3dbcf7a46ff624eec84c60c1429715 242 Gene3D G3DSA:3.40.50.300 10 230 1.3E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3825 7b3dbcf7a46ff624eec84c60c1429715 242 PANTHER PTHR24220 13 238 1.5E-85 T 19-04-2016 AMED_3825 7b3dbcf7a46ff624eec84c60c1429715 242 SMART SM00382 36 219 1.3E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_3825 7b3dbcf7a46ff624eec84c60c1429715 242 Pfam PF00005 ABC transporter 27 167 1.3E-28 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_3825 7b3dbcf7a46ff624eec84c60c1429715 242 PANTHER PTHR24220:SF568 13 238 1.5E-85 T 19-04-2016 AMED_3825 7b3dbcf7a46ff624eec84c60c1429715 242 SUPERFAMILY SSF52540 10 230 5.54E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6888 259d7fa54ba66a6fb5e82a8a9f7a04d1 482 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 300 474 2.5E-32 T 19-04-2016 IPR020051 SagB-type dehydrogenase domain AMED_6888 259d7fa54ba66a6fb5e82a8a9f7a04d1 482 Gene3D G3DSA:3.40.109.10 382 461 1.2E-4 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_6888 259d7fa54ba66a6fb5e82a8a9f7a04d1 482 SUPERFAMILY SSF55469 390 460 2.15E-5 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 Pfam PF10397 Adenylosuccinate lyase C-terminus 369 452 9.5E-12 T 19-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 11 452 1.4E-129 T 19-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 PANTHER PTHR11444:SF2 11 464 9.5E-121 T 19-04-2016 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 PANTHER PTHR11444 11 464 9.5E-121 T 19-04-2016 IPR000362 Fumarate lyase family AMED_9067 1f6790fa2686994b5acf155c9d829813 475 SMART SM00998 368 453 9.9E-17 T 19-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 Gene3D G3DSA:1.20.200.10 102 450 2.3E-83 T 19-04-2016 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 SUPERFAMILY SSF48557 10 454 5.34E-83 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 Pfam PF00206 Lyase 40 303 1.1E-22 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMED_9067 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 2.2E-11 T 19-04-2016 IPR000362 Fumarate lyase family AMED_9067 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 98 116 2.2E-11 T 19-04-2016 IPR000362 Fumarate lyase family AMED_9067 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 236 263 2.2E-11 T 19-04-2016 IPR000362 Fumarate lyase family AMED_9067 1f6790fa2686994b5acf155c9d829813 475 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 2.2E-11 T 19-04-2016 IPR000362 Fumarate lyase family AMED_9067 1f6790fa2686994b5acf155c9d829813 475 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMED_9067 1f6790fa2686994b5acf155c9d829813 475 Gene3D G3DSA:1.10.275.10 13 101 1.1E-20 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMED_0327 4b3dd8e01f481baca109e3fe8d6c718a 293 Gene3D G3DSA:3.40.710.10 21 166 1.2E-7 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0327 4b3dd8e01f481baca109e3fe8d6c718a 293 SUPERFAMILY SSF56601 23 188 2.92E-16 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 Pfam PF07690 Major Facilitator Superfamily 27 327 1.7E-28 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 PANTHER PTHR23501 21 234 5.2E-49 T 19-04-2016 AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 PANTHER PTHR23501 250 446 5.2E-49 T 19-04-2016 AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 SUPERFAMILY SSF103473 10 205 1.7E-50 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 SUPERFAMILY SSF103473 248 447 1.7E-50 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 Gene3D G3DSA:1.20.1250.20 24 201 7.4E-25 T 19-04-2016 AMED_1659 2367d88135d8e72a3d5980e1ac255db7 455 Gene3D G3DSA:1.20.1250.20 270 446 2.4E-13 T 19-04-2016 AMED_0464 183479be522ebf32b50435675a4e87af 267 PANTHER PTHR12110 2 265 3.5E-43 T 19-04-2016 AMED_0464 183479be522ebf32b50435675a4e87af 267 Pfam PF01261 Xylose isomerase-like TIM barrel 25 215 4.1E-19 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_0464 183479be522ebf32b50435675a4e87af 267 SUPERFAMILY SSF51658 6 258 1.22E-42 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_0464 183479be522ebf32b50435675a4e87af 267 PANTHER PTHR12110:SF17 2 265 3.5E-43 T 19-04-2016 AMED_0464 183479be522ebf32b50435675a4e87af 267 Gene3D G3DSA:3.20.20.150 5 263 4.3E-39 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_1626 267a332b0232f80c3df21490d1c20be3 256 Pfam PF07398 MDMPI C-terminal domain 147 247 7.9E-9 T 19-04-2016 IPR010872 MDMPI C-terminal AMED_1626 267a332b0232f80c3df21490d1c20be3 256 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 13 230 3.0E-25 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_1626 267a332b0232f80c3df21490d1c20be3 256 PANTHER PTHR40758 1 254 4.5E-51 T 19-04-2016 AMED_1626 267a332b0232f80c3df21490d1c20be3 256 SUPERFAMILY SSF109854 7 141 3.97E-8 T 19-04-2016 AMED_1626 267a332b0232f80c3df21490d1c20be3 256 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 14 135 4.8E-16 T 19-04-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 AMED_8043 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 SUPERFAMILY SSF55248 1 91 8.76E-26 T 19-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 AMED_8043 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 5 89 8.0E-27 T 19-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 AMED_8043 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 PANTHER PTHR12599 5 92 6.1E-26 T 19-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 AMED_8043 f2d0ce9b1d1d0e60b2f277fc6bb51ddd 94 Gene3D G3DSA:3.30.1360.20 17 91 1.5E-26 T 19-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 AMED_5035 bcb301befdb4a02c6813919de807e704 345 SUPERFAMILY SSF81345 19 340 3.14E-80 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_5035 bcb301befdb4a02c6813919de807e704 345 Pfam PF01032 FecCD transport family 30 339 7.2E-91 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_5035 bcb301befdb4a02c6813919de807e704 345 Gene3D G3DSA:1.10.3470.10 21 341 2.2E-100 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_5035 bcb301befdb4a02c6813919de807e704 345 PANTHER PTHR30472:SF31 19 345 1.4E-131 T 19-04-2016 AMED_5035 bcb301befdb4a02c6813919de807e704 345 PANTHER PTHR30472 19 345 1.4E-131 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_8939 0642a38c5fd5aefc72bb7c137c0fe0ba 222 PANTHER PTHR30582 118 222 4.4E-13 T 19-04-2016 AMED_8939 0642a38c5fd5aefc72bb7c137c0fe0ba 222 Pfam PF03734 L,D-transpeptidase catalytic domain 116 220 1.4E-8 T 19-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 AMED_8939 0642a38c5fd5aefc72bb7c137c0fe0ba 222 SUPERFAMILY SSF141523 112 220 1.83E-18 T 19-04-2016 AMED_8939 0642a38c5fd5aefc72bb7c137c0fe0ba 222 Gene3D G3DSA:2.40.440.10 114 221 3.5E-10 T 19-04-2016 AMED_8939 0642a38c5fd5aefc72bb7c137c0fe0ba 222 PANTHER PTHR30582:SF2 118 222 4.4E-13 T 19-04-2016 AMED_7518 2cb3e6980543247c114a7aa04b9fe046 116 Gene3D G3DSA:1.20.1250.20 2 106 7.5E-7 T 19-04-2016 AMED_7518 2cb3e6980543247c114a7aa04b9fe046 116 SUPERFAMILY SSF103473 1 110 5.89E-9 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_2328 83e2e5d5e1afa8dfb0df5a9ba2f988b2 289 Pfam PF00892 EamA-like transporter family 152 281 2.0E-16 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_2328 83e2e5d5e1afa8dfb0df5a9ba2f988b2 289 SUPERFAMILY SSF103481 186 286 1.57E-10 T 19-04-2016 AMED_2328 83e2e5d5e1afa8dfb0df5a9ba2f988b2 289 PANTHER PTHR22911 1 289 2.6E-26 T 19-04-2016 AMED_2328 83e2e5d5e1afa8dfb0df5a9ba2f988b2 289 PANTHER PTHR22911:SF23 1 289 2.6E-26 T 19-04-2016 AMED_1482 bde89003501c6cf2f84ffe21cbb9ff50 350 PANTHER PTHR33055:SF1 1 336 5.5E-124 T 19-04-2016 AMED_1482 bde89003501c6cf2f84ffe21cbb9ff50 350 Pfam PF01548 Transposase 4 157 7.2E-29 T 19-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMED_1482 bde89003501c6cf2f84ffe21cbb9ff50 350 PANTHER PTHR33055 1 336 5.5E-124 T 19-04-2016 AMED_1482 bde89003501c6cf2f84ffe21cbb9ff50 350 Pfam PF02371 Transposase IS116/IS110/IS902 family 224 305 1.0E-18 T 19-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMED_3968 6936b378e5f41a452839b4bd999af955 129 Pfam PF04542 Sigma-70 region 2 84 125 8.3E-6 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3968 6936b378e5f41a452839b4bd999af955 129 Gene3D G3DSA:1.10.1740.10 66 127 7.0E-11 T 19-04-2016 AMED_3968 6936b378e5f41a452839b4bd999af955 129 SUPERFAMILY SSF88946 66 126 1.88E-10 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 Gene3D G3DSA:1.10.1740.10 16 106 1.1E-13 T 19-04-2016 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 164 7.4E-16 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 PANTHER PTHR30173 5 170 1.3E-25 T 19-04-2016 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 PANTHER PTHR30173:SF13 5 170 1.3E-25 T 19-04-2016 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 SUPERFAMILY SSF88659 105 167 2.43E-11 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 Gene3D G3DSA:1.10.10.10 107 168 1.4E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 SUPERFAMILY SSF88946 13 100 2.16E-12 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 Pfam PF04542 Sigma-70 region 2 17 84 2.3E-10 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0110 bd3f8b247fc7b7c799c07b610ef3c95f 174 Pfam PF08281 Sigma-70, region 4 112 161 2.2E-8 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_5283 81b1855def2bdf901f5f3c1f83be64de 190 Gene3D G3DSA:3.60.15.10 9 184 1.1E-41 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5283 81b1855def2bdf901f5f3c1f83be64de 190 PANTHER PTHR11935 1 183 7.7E-37 T 19-04-2016 AMED_5283 81b1855def2bdf901f5f3c1f83be64de 190 SUPERFAMILY SSF56281 6 184 1.4E-39 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5283 81b1855def2bdf901f5f3c1f83be64de 190 SMART SM00849 12 167 6.6E-24 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_5283 81b1855def2bdf901f5f3c1f83be64de 190 Pfam PF00753 Metallo-beta-lactamase superfamily 9 167 3.0E-20 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_0246 57cf362f5ece037be3475787fe9449fe 151 SMART SM00347 29 132 8.7E-20 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 PANTHER PTHR33164 2 148 1.1E-31 T 19-04-2016 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 Gene3D G3DSA:1.10.10.10 3 148 7.5E-34 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0246 57cf362f5ece037be3475787fe9449fe 151 PANTHER PTHR33164:SF1 2 148 1.1E-31 T 19-04-2016 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 SUPERFAMILY SSF46785 3 147 2.45E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0246 57cf362f5ece037be3475787fe9449fe 151 Pfam PF12802 MarR family 37 95 4.4E-12 T 19-04-2016 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 1.4E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 1.4E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 1.4E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_0246 57cf362f5ece037be3475787fe9449fe 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 1.4E-7 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 PANTHER PTHR11908 1 145 5.8E-47 T 19-04-2016 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 PANTHER PTHR11908:SF82 1 145 5.8E-47 T 19-04-2016 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 SUPERFAMILY SSF54292 2 78 2.49E-22 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 Gene3D G3DSA:1.10.150.120 75 152 4.4E-35 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 Gene3D G3DSA:3.10.20.30 2 74 1.3E-25 T 19-04-2016 IPR012675 Beta-grasp domain AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 SUPERFAMILY SSF47741 85 151 3.01E-32 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 59 1.7E-5 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_5245 0db75fd77b0be5aaf61c3dec59da6f61 156 Pfam PF01799 [2Fe-2S] binding domain 73 146 9.2E-31 T 19-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMED_1592 dc97a80962e70f5166f095c3b691a4ef 349 PANTHER PTHR32196:SF21 1 347 1.2E-66 T 19-04-2016 AMED_1592 dc97a80962e70f5166f095c3b691a4ef 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 335 3.7E-36 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_1592 dc97a80962e70f5166f095c3b691a4ef 349 PANTHER PTHR32196 1 347 1.2E-66 T 19-04-2016 AMED_4558 27e32820d140b8fe49df5817465e79e2 144 Gene3D G3DSA:1.10.260.40 35 128 1.8E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3224 69d77fec0f22a6776a4a866bc1e3e5b4 105 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 5 95 1.3E-18 T 19-04-2016 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-7591|UniPathway: UPA00799|UniPathway: UPA00802 AMED_2114 41fecc3918a62196138469765b3b18cf 143 Pfam PF11253 Protein of unknown function (DUF3052) 13 137 1.0E-54 T 19-04-2016 IPR021412 Protein of unknown function DUF3052 AMED_8420 ce4b8d56aded064f7ddffe54d0af47da 89 SMART SM00530 15 70 1.7E-10 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8420 ce4b8d56aded064f7ddffe54d0af47da 89 Gene3D G3DSA:1.10.260.40 12 74 7.0E-18 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8420 ce4b8d56aded064f7ddffe54d0af47da 89 Pfam PF01381 Helix-turn-helix 19 68 5.5E-10 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_8420 ce4b8d56aded064f7ddffe54d0af47da 89 PANTHER PTHR10245 19 75 7.7E-13 T 19-04-2016 AMED_8420 ce4b8d56aded064f7ddffe54d0af47da 89 SUPERFAMILY SSF47413 12 75 2.73E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8013 88e6e08fcc459605c909cd9ca166c86f 362 SUPERFAMILY SSF53697 63 349 6.45E-41 T 19-04-2016 AMED_0938 e67b69570f459e057a1dd93dc34428bb 209 Hamap MF_00528 Septum formation protein Maf [maf]. 2 200 26.943 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMED_0938 e67b69570f459e057a1dd93dc34428bb 209 Gene3D G3DSA:3.90.950.10 2 199 9.1E-57 T 19-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like AMED_0938 e67b69570f459e057a1dd93dc34428bb 209 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 193 4.1E-44 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMED_0938 e67b69570f459e057a1dd93dc34428bb 209 Pfam PF02545 Maf-like protein 3 195 1.3E-42 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMED_0938 e67b69570f459e057a1dd93dc34428bb 209 SUPERFAMILY SSF52972 2 195 4.71E-47 T 19-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like AMED_0938 e67b69570f459e057a1dd93dc34428bb 209 PIRSF PIRSF006305 1 202 7.3E-40 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMED_7495 765552c51fdf63a111083ca0a7c99eee 340 SUPERFAMILY SSF51679 20 330 1.88E-49 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7495 765552c51fdf63a111083ca0a7c99eee 340 PANTHER PTHR30137 13 339 5.5E-31 T 19-04-2016 AMED_7495 765552c51fdf63a111083ca0a7c99eee 340 Gene3D G3DSA:3.20.20.30 18 338 1.1E-58 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7495 765552c51fdf63a111083ca0a7c99eee 340 Pfam PF00296 Luciferase-like monooxygenase 34 257 2.6E-26 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 PANTHER PTHR10381 21 191 3.2E-98 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 4 194 39.06 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 113 126 - T 19-04-2016 IPR033135 ClpP, histidine active site AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 169 188 9.1E-44 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 60 80 9.1E-44 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 91 108 9.1E-44 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 112 131 9.1E-44 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 PRINTS PR00127 Clp protease catalytic subunit P signature 20 35 9.1E-44 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 SUPERFAMILY SSF52096 20 193 8.19E-65 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 Gene3D G3DSA:3.90.226.10 20 193 2.0E-73 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_6741 3f576909c1e5d19ce80b326a27c0ee01 201 Pfam PF00574 Clp protease 19 192 2.4E-74 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMED_9095 11f089b0dbdb41873f62d38c78a0a6b0 544 Pfam PF00999 Sodium/hydrogen exchanger family 14 405 1.5E-51 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_9095 11f089b0dbdb41873f62d38c78a0a6b0 544 PANTHER PTHR10110:SF86 2 439 5.2E-66 T 19-04-2016 AMED_9095 11f089b0dbdb41873f62d38c78a0a6b0 544 PANTHER PTHR10110 2 439 5.2E-66 T 19-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 AMED_0817 e862e787dd2c1ce8b095859206a751cf 195 Pfam PF13599 Pentapeptide repeats (9 copies) 22 102 2.4E-10 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_0817 e862e787dd2c1ce8b095859206a751cf 195 PANTHER PTHR14136 9 176 1.2E-24 T 19-04-2016 AMED_0817 e862e787dd2c1ce8b095859206a751cf 195 Pfam PF00805 Pentapeptide repeats (8 copies) 123 160 1.1E-14 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_0817 e862e787dd2c1ce8b095859206a751cf 195 SUPERFAMILY SSF141571 19 194 1.18E-43 T 19-04-2016 AMED_0817 e862e787dd2c1ce8b095859206a751cf 195 PANTHER PTHR14136:SF0 9 176 1.2E-24 T 19-04-2016 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 Gene3D G3DSA:1.10.10.60 291 342 1.0E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 Pfam PF12833 Helix-turn-helix domain 262 340 4.4E-19 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 SUPERFAMILY SSF46689 291 342 3.63E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 PANTHER PTHR11019:SF52 15 346 1.2E-28 T 19-04-2016 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 307 322 3.3E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 322 338 3.3E-5 T 19-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 SMART SM00342 256 338 3.5E-22 T 19-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMED_1556 b479716daa95650370334a4cc8eec0ef 351 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 32 213 2.2E-35 T 19-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMED_1556 b479716daa95650370334a4cc8eec0ef 351 PANTHER PTHR11019 15 346 1.2E-28 T 19-04-2016 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 Pfam PF00196 Bacterial regulatory proteins, luxR family 131 186 2.2E-16 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 SUPERFAMILY SSF46894 128 192 1.67E-18 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 ProSitePatterns PS00622 LuxR-type HTH domain signature. 146 173 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PANTHER PTHR26402 132 192 4.7E-14 T 19-04-2016 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 SMART SM00421 129 186 5.8E-20 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 162 5.9E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 174 5.9E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 132 146 5.9E-8 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 Gene3D G3DSA:1.10.10.10 132 192 3.0E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8124 2b3e0a3c6c3a0acd8da09a96fd7de664 192 PANTHER PTHR26402:SF458 132 192 4.7E-14 T 19-04-2016 AMED_8698 44e39a296dbe189ad4a9e8933c851eb1 304 PANTHER PTHR30477 41 255 3.9E-26 T 19-04-2016 AMED_8698 44e39a296dbe189ad4a9e8933c851eb1 304 PANTHER PTHR30477:SF1 41 255 3.9E-26 T 19-04-2016 AMED_8698 44e39a296dbe189ad4a9e8933c851eb1 304 Gene3D G3DSA:3.40.50.1980 193 304 1.4E-5 T 19-04-2016 AMED_8698 44e39a296dbe189ad4a9e8933c851eb1 304 Gene3D G3DSA:3.40.50.1980 39 185 2.1E-30 T 19-04-2016 AMED_8698 44e39a296dbe189ad4a9e8933c851eb1 304 Pfam PF01297 Zinc-uptake complex component A periplasmic 46 300 7.4E-42 T 19-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMED_8698 44e39a296dbe189ad4a9e8933c851eb1 304 SUPERFAMILY SSF53807 40 304 1.91E-48 T 19-04-2016 AMED_8046 4da93ff6f7b15f8cd18a935cdd52989a 196 Gene3D G3DSA:1.10.10.10 23 75 3.7E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8046 4da93ff6f7b15f8cd18a935cdd52989a 196 Gene3D G3DSA:3.30.460.10 97 182 1.0E-8 T 19-04-2016 AMED_8046 4da93ff6f7b15f8cd18a935cdd52989a 196 SUPERFAMILY SSF46785 22 80 1.42E-9 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8314 3a50309f9bfc5d9eabe56850d5150180 205 Pfam PF08666 SAF domain 51 106 6.4E-5 T 19-04-2016 IPR013974 SAF domain AMED_8314 3a50309f9bfc5d9eabe56850d5150180 205 SMART SM00858 48 110 4.4E-6 T 19-04-2016 IPR013974 SAF domain AMED_1880 3919e1eefa531be4442bd711f74abbce 317 Pfam PF07676 WD40-like Beta Propeller Repeat 226 252 2.3E-4 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMED_1880 3919e1eefa531be4442bd711f74abbce 317 Gene3D G3DSA:2.120.10.30 108 308 3.1E-16 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_1880 3919e1eefa531be4442bd711f74abbce 317 SUPERFAMILY SSF69304 102 304 1.57E-15 T 19-04-2016 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 7 409 33.442 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 198 221 1.4E-27 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 149 170 1.4E-27 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 95 121 1.4E-27 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 123 142 1.4E-27 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 1.4E-27 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 Pfam PF01566 Natural resistance-associated macrophage protein 36 383 3.6E-112 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PANTHER PTHR11706 13 411 1.2E-182 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 18 377 4.3E-84 T 19-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 AMED_6303 b0cfc1e494643eab4f9d4862c80d81b1 411 PANTHER PTHR11706:SF42 13 411 1.2E-182 T 19-04-2016 AMED_6580 f8caf306a9d60760166974b559be58b9 148 Pfam PF00571 CBS domain 98 143 1.7E-5 T 19-04-2016 IPR000644 CBS domain AMED_6580 f8caf306a9d60760166974b559be58b9 148 PANTHER PTHR11911 6 38 7.4E-19 T 19-04-2016 AMED_6580 f8caf306a9d60760166974b559be58b9 148 PANTHER PTHR11911 60 141 7.4E-19 T 19-04-2016 AMED_6580 f8caf306a9d60760166974b559be58b9 148 PANTHER PTHR11911:SF77 6 38 7.4E-19 T 19-04-2016 AMED_6580 f8caf306a9d60760166974b559be58b9 148 PANTHER PTHR11911:SF77 60 141 7.4E-19 T 19-04-2016 AMED_6580 f8caf306a9d60760166974b559be58b9 148 SUPERFAMILY SSF54631 6 143 8.97E-13 T 19-04-2016 AMED_6580 f8caf306a9d60760166974b559be58b9 148 SMART SM00116 9 57 34.0 T 19-04-2016 IPR000644 CBS domain AMED_6580 f8caf306a9d60760166974b559be58b9 148 SMART SM00116 98 145 0.18 T 19-04-2016 IPR000644 CBS domain AMED_6580 f8caf306a9d60760166974b559be58b9 148 Gene3D G3DSA:3.10.580.10 6 143 1.8E-10 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 SUPERFAMILY SSF56801 4 498 2.49E-159 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 Gene3D G3DSA:3.40.50.980 6 164 2.1E-36 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 490 2.6E-25 T 19-04-2016 IPR025110 AMP-binding enzyme C-terminal domain AMED_7123 e4579211032b99874505773ace7891ed 501 Gene3D G3DSA:2.30.38.10 327 396 1.8E-29 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 Gene3D G3DSA:3.30.300.30 401 498 3.2E-34 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 159 170 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7123 e4579211032b99874505773ace7891ed 501 Gene3D G3DSA:3.40.50.980 165 326 6.4E-42 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 PANTHER PTHR24096 7 497 8.0E-169 T 19-04-2016 AMED_7123 e4579211032b99874505773ace7891ed 501 Pfam PF00501 AMP-binding enzyme 9 406 3.0E-101 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 SUPERFAMILY SSF52374 10 287 1.88E-98 T 19-04-2016 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 Hamap MF_00158 Pantothenate synthetase [panC]. 12 285 37.604 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 PANTHER PTHR21299 18 299 1.6E-108 T 19-04-2016 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 Pfam PF02569 Pantoate-beta-alanine ligase 16 283 2.3E-90 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 Gene3D G3DSA:3.40.50.620 8 185 1.8E-70 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_8738 2063ce1db065634ba197698bc46ec28d 303 PANTHER PTHR21299:SF1 18 299 1.6E-108 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 Gene3D G3DSA:3.30.1300.10 186 290 3.3E-31 T 19-04-2016 AMED_8738 2063ce1db065634ba197698bc46ec28d 303 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 18 284 7.1E-82 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMED_7981 444f01dbfe9b2efe358d8ac764743a97 249 SUPERFAMILY SSF89392 28 241 2.08E-9 T 19-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMED_4910 d544032bbdab035eb81d6664fccea02b 383 SUPERFAMILY SSF54631 267 378 8.7E-7 T 19-04-2016 AMED_4910 d544032bbdab035eb81d6664fccea02b 383 Pfam PF02163 Peptidase family M50 157 199 1.2E-6 T 19-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 AMED_4910 d544032bbdab035eb81d6664fccea02b 383 Gene3D G3DSA:3.10.580.10 278 380 4.8E-6 T 19-04-2016 AMED_4910 d544032bbdab035eb81d6664fccea02b 383 PIRSF PIRSF006404 19 383 8.8E-68 T 19-04-2016 IPR016483 Uncharacterised conserved protein UCP006404, peptidase M50/CBS AMED_4910 d544032bbdab035eb81d6664fccea02b 383 PANTHER PTHR39188 4 219 2.4E-14 T 19-04-2016 AMED_0744 2d2574a4ed7184a7733195327c0c6eab 320 SUPERFAMILY SSF56601 63 273 1.27E-23 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0744 2d2574a4ed7184a7733195327c0c6eab 320 Gene3D G3DSA:3.40.710.10 43 273 4.0E-30 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_0744 2d2574a4ed7184a7733195327c0c6eab 320 Pfam PF13354 Beta-lactamase enzyme family 61 263 1.4E-36 T 19-04-2016 AMED_4030 f53a51963fefdfd75ef1a30cd78215ef 95 SMART SM00823 Phosphopantetheine attachment site 20 93 0.0018 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_4030 f53a51963fefdfd75ef1a30cd78215ef 95 SUPERFAMILY SSF47336 22 92 1.01E-14 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4030 f53a51963fefdfd75ef1a30cd78215ef 95 Pfam PF00550 Phosphopantetheine attachment site 23 89 6.5E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4030 f53a51963fefdfd75ef1a30cd78215ef 95 Gene3D G3DSA:1.10.1200.10 16 94 1.5E-17 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4030 f53a51963fefdfd75ef1a30cd78215ef 95 ProSitePatterns PS00012 Phosphopantetheine attachment site. 46 61 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMED_5941 24ac85f448428c963ce274d7d016ddb0 330 PANTHER PTHR30040 126 328 1.1E-43 T 19-04-2016 AMED_5941 24ac85f448428c963ce274d7d016ddb0 330 PANTHER PTHR30040:SF2 5 101 1.1E-43 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_5941 24ac85f448428c963ce274d7d016ddb0 330 PANTHER PTHR30040:SF2 126 328 1.1E-43 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_5941 24ac85f448428c963ce274d7d016ddb0 330 SUPERFAMILY SSF143631 2 324 3.66E-58 T 19-04-2016 IPR003374 ApbE-like domain AMED_5941 24ac85f448428c963ce274d7d016ddb0 330 Pfam PF02424 ApbE family 9 304 8.9E-54 T 19-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 AMED_5941 24ac85f448428c963ce274d7d016ddb0 330 PANTHER PTHR30040 5 101 1.1E-43 T 19-04-2016 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 SMART SM00347 29 129 5.9E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 Gene3D G3DSA:1.10.10.10 9 141 1.3E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 1.7E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 1.7E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 1.7E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 1.7E-11 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 PANTHER PTHR33164 10 142 4.7E-22 T 19-04-2016 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 Pfam PF12802 MarR family 34 92 1.6E-10 T 19-04-2016 AMED_2865 6f768ed69b6aef050a517ccbaca927fd 143 SUPERFAMILY SSF46785 7 141 4.12E-28 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6333 6c6fa98a110b0f5511832439de5f4158 205 Pfam PF13649 Methyltransferase domain 47 137 3.9E-20 T 19-04-2016 AMED_6333 6c6fa98a110b0f5511832439de5f4158 205 Gene3D G3DSA:3.40.50.150 7 185 1.5E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6333 6c6fa98a110b0f5511832439de5f4158 205 PANTHER PTHR10108 47 184 4.2E-24 T 19-04-2016 AMED_6333 6c6fa98a110b0f5511832439de5f4158 205 SUPERFAMILY SSF53335 9 192 5.17E-36 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 Gene3D G3DSA:3.40.50.720 175 281 1.6E-16 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 Gene3D G3DSA:3.90.180.10 2 174 4.4E-44 T 19-04-2016 IPR011032 GroES-like AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 SUPERFAMILY SSF51735 149 293 1.25E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 SUPERFAMILY SSF50129 3 181 9.28E-43 T 19-04-2016 IPR011032 GroES-like AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 PANTHER PTHR11695 16 315 1.6E-62 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 140 5.9E-25 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 19-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 AMED_3396 16c2cfcd50a8bfefb3cd4267c2ecd13e 337 PANTHER PTHR11695:SF38 16 315 1.6E-62 T 19-04-2016 AMED_4209 eb215bc377264685a2825e457421eb48 297 PANTHER PTHR11085:SF22 33 160 2.0E-112 T 19-04-2016 AMED_4209 eb215bc377264685a2825e457421eb48 297 Pfam PF02146 Sir2 family 39 240 1.2E-42 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_4209 eb215bc377264685a2825e457421eb48 297 PANTHER PTHR11085 33 160 2.0E-112 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_4209 eb215bc377264685a2825e457421eb48 297 PANTHER PTHR11085 178 289 2.0E-112 T 19-04-2016 IPR003000 Sirtuin family GO:0070403 AMED_4209 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.30.1600.10 50 84 2.5E-19 T 19-04-2016 IPR026591 Sirtuin family, catalytic core small domain AMED_4209 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.30.1600.10 137 211 2.5E-19 T 19-04-2016 IPR026591 Sirtuin family, catalytic core small domain AMED_4209 eb215bc377264685a2825e457421eb48 297 Hamap MF_01967 NAD-dependent protein deacetylase [cobB]. 16 285 60.544 T 19-04-2016 IPR026587 Sirtuin, class II AMED_4209 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.40.50.1220 99 136 1.5E-40 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4209 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.40.50.1220 26 49 1.5E-40 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4209 eb215bc377264685a2825e457421eb48 297 Gene3D G3DSA:3.40.50.1220 217 291 1.5E-40 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4209 eb215bc377264685a2825e457421eb48 297 SUPERFAMILY SSF52467 31 286 1.31E-70 T 19-04-2016 IPR029035 DHS-like NAD/FAD-binding domain AMED_4209 eb215bc377264685a2825e457421eb48 297 PANTHER PTHR11085:SF22 178 289 2.0E-112 T 19-04-2016 AMED_0181 b03de7f00394110425d91e81a05681b7 302 Pfam PF01842 ACT domain 196 255 4.1E-9 T 19-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 AMED_0181 b03de7f00394110425d91e81a05681b7 302 PIRSF PIRSF001500 1 271 6.0E-62 T 19-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 AMED_0181 b03de7f00394110425d91e81a05681b7 302 Pfam PF00800 Prephenate dehydratase 4 177 2.2E-50 T 19-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 AMED_0181 b03de7f00394110425d91e81a05681b7 302 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 153 175 - T 19-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 AMED_0181 b03de7f00394110425d91e81a05681b7 302 PANTHER PTHR21022 3 289 5.3E-87 T 19-04-2016 AMED_0181 b03de7f00394110425d91e81a05681b7 302 SUPERFAMILY SSF53850 3 184 3.8E-49 T 19-04-2016 AMED_0181 b03de7f00394110425d91e81a05681b7 302 Gene3D G3DSA:3.30.70.260 183 270 1.7E-27 T 19-04-2016 AMED_0181 b03de7f00394110425d91e81a05681b7 302 Gene3D G3DSA:3.40.190.10 93 165 1.1E-18 T 19-04-2016 AMED_0181 b03de7f00394110425d91e81a05681b7 302 SUPERFAMILY SSF55021 172 269 6.7E-21 T 19-04-2016 AMED_0181 b03de7f00394110425d91e81a05681b7 302 Gene3D G3DSA:3.40.190.10 3 92 1.0E-26 T 19-04-2016 AMED_1406 eb7f93ea2454382910b78ec0c8cd6b99 220 SUPERFAMILY SSF81296 37 220 3.92E-27 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_1406 eb7f93ea2454382910b78ec0c8cd6b99 220 Gene3D G3DSA:2.70.50.50 37 219 5.0E-37 T 19-04-2016 AMED_1406 eb7f93ea2454382910b78ec0c8cd6b99 220 PANTHER PTHR34823 8 220 2.4E-40 T 19-04-2016 AMED_1406 eb7f93ea2454382910b78ec0c8cd6b99 220 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 37 217 2.4E-28 T 19-04-2016 IPR004302 Chitin-binding protein, N-terminal AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 Gene3D G3DSA:3.40.50.720 4 250 5.7E-83 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 SUPERFAMILY SSF51735 7 250 1.58E-79 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.5E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.5E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.5E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.5E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 249 6.0E-63 T 19-04-2016 AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PANTHER PTHR24322 155 187 3.6E-53 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 PANTHER PTHR24322 10 139 3.6E-53 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3861 09511becc391c42dfcce5bc4c1e81e02 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 190 0.0062 T 19-04-2016 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF53098 323 471 1.14E-51 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:3.30.420.140 327 452 1.0E-51 T 19-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SMART SM00732 327 426 8.1E-40 T 19-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Pfam PF09371 Tex-like protein N-terminal domain 9 193 2.2E-66 T 19-04-2016 IPR018974 Tex-like protein, N-terminal AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SMART SM00316 651 722 9.3E-25 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:2.40.50.140 643 722 5.7E-25 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Pfam PF12836 Helix-hairpin-helix motif 493 557 6.9E-27 T 19-04-2016 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF158832 4 322 1.31E-115 T 19-04-2016 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Pfam PF16921 Tex protein YqgF-like domain 328 453 9.0E-53 T 19-04-2016 IPR032639 Tex protein, YqgF-like domain AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF47781 562 633 5.56E-19 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.3500.10 453 500 5.1E-102 T 19-04-2016 IPR023323 Tex-like domain AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.3500.10 110 323 5.1E-102 T 19-04-2016 IPR023323 Tex-like domain AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.10.650 4 109 5.0E-43 T 19-04-2016 IPR023319 Tex-like protein, HTH domain AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF50249 640 724 1.04E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Gene3D G3DSA:1.10.150.310 501 632 6.3E-44 T 19-04-2016 IPR023097 Tex RuvX-like domain AMED_1551 40e419bda162d505c87c9784fb9b147f 793 PANTHER PTHR10724:SF1 1 792 0.0 T 19-04-2016 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 PANTHER PTHR10724 1 792 0.0 T 19-04-2016 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 Pfam PF00575 S1 RNA binding domain 651 722 1.5E-17 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMED_1551 40e419bda162d505c87c9784fb9b147f 793 SUPERFAMILY SSF47781 472 560 8.0E-26 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMED_2841 5798d26017aca6d6b8dac67135bf7b3f 408 PANTHER PTHR24421:SF26 97 404 9.8E-59 T 19-04-2016 AMED_2841 5798d26017aca6d6b8dac67135bf7b3f 408 SUPERFAMILY SSF55874 294 403 7.9E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2841 5798d26017aca6d6b8dac67135bf7b3f 408 Pfam PF07730 Histidine kinase 210 275 2.9E-17 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_2841 5798d26017aca6d6b8dac67135bf7b3f 408 PANTHER PTHR24421 97 404 9.8E-59 T 19-04-2016 AMED_3349 77784f2f07a70d69a7a1285dcfe757da 439 Pfam PF07859 alpha/beta hydrolase fold 230 346 1.2E-11 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_3349 77784f2f07a70d69a7a1285dcfe757da 439 PANTHER PTHR23024 215 399 1.4E-20 T 19-04-2016 AMED_3349 77784f2f07a70d69a7a1285dcfe757da 439 PANTHER PTHR23024:SF202 215 399 1.4E-20 T 19-04-2016 AMED_3349 77784f2f07a70d69a7a1285dcfe757da 439 SUPERFAMILY SSF53474 203 421 2.58E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3349 77784f2f07a70d69a7a1285dcfe757da 439 Gene3D G3DSA:3.40.50.1820 203 421 8.3E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6115 6111089eb6b41f62c97cd877306bdc96 461 PANTHER PTHR11010 1 219 2.0E-22 T 19-04-2016 AMED_6115 6111089eb6b41f62c97cd877306bdc96 461 SUPERFAMILY SSF53474 112 205 7.51E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6115 6111089eb6b41f62c97cd877306bdc96 461 SUPERFAMILY SSF53474 355 413 7.51E-11 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6115 6111089eb6b41f62c97cd877306bdc96 461 Pfam PF05576 PS-10 peptidase S37 23 456 2.3E-138 T 19-04-2016 IPR008761 Peptidase S37, tripeptidyl aminopeptidase AMED_6115 6111089eb6b41f62c97cd877306bdc96 461 Gene3D G3DSA:3.40.50.1820 353 384 1.2E-8 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6115 6111089eb6b41f62c97cd877306bdc96 461 Gene3D G3DSA:3.40.50.1820 113 192 1.2E-8 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4950 60107df9f2a37e487e1f0daf35384672 314 PANTHER PTHR33608:SF5 24 312 1.6E-73 T 19-04-2016 AMED_4950 60107df9f2a37e487e1f0daf35384672 314 Pfam PF01882 Protein of unknown function DUF58 53 137 2.0E-17 T 19-04-2016 IPR002881 Domain of unknown function DUF58 AMED_4950 60107df9f2a37e487e1f0daf35384672 314 PANTHER PTHR33608 24 312 1.6E-73 T 19-04-2016 AMED_7246 638e1b98f6b311dd6adb3089efc68223 256 PANTHER PTHR10672 7 219 4.8E-93 T 19-04-2016 AMED_7246 638e1b98f6b311dd6adb3089efc68223 256 SUPERFAMILY SSF53639 14 221 2.35E-64 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_7246 638e1b98f6b311dd6adb3089efc68223 256 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 23 202 4.0E-46 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_7246 638e1b98f6b311dd6adb3089efc68223 256 Gene3D G3DSA:3.40.225.10 17 221 2.5E-62 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_7246 638e1b98f6b311dd6adb3089efc68223 256 SMART SM01007 22 202 5.5E-63 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_0583 c6de2e8297ce576232af5944960561af 283 Gene3D G3DSA:3.40.50.150 6 282 1.3E-93 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0583 c6de2e8297ce576232af5944960561af 283 SUPERFAMILY SSF53335 19 267 2.11E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0583 c6de2e8297ce576232af5944960561af 283 Pfam PF04672 S-adenosyl methyltransferase 12 281 5.0E-76 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0583 c6de2e8297ce576232af5944960561af 283 PIRSF PIRSF017393 1 282 1.2E-80 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0467 5af8445d6344c73be0106c3bb195714d 71 Pfam PF12728 Helix-turn-helix domain 17 65 1.1E-15 T 19-04-2016 AMED_0467 5af8445d6344c73be0106c3bb195714d 71 PANTHER PTHR38431 8 71 3.3E-25 T 19-04-2016 AMED_0467 5af8445d6344c73be0106c3bb195714d 71 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 17 63 1.5E-20 T 19-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 AMED_0467 5af8445d6344c73be0106c3bb195714d 71 SUPERFAMILY SSF46955 17 64 2.2E-5 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_0467 5af8445d6344c73be0106c3bb195714d 71 Gene3D G3DSA:1.10.10.10 17 64 9.8E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4441 dfc98ce5d427c3875ed759108e93c605 120 SUPERFAMILY SSF52091 17 109 3.73E-12 T 19-04-2016 IPR002645 STAS domain AMED_4441 dfc98ce5d427c3875ed759108e93c605 120 Pfam PF13466 STAS domain 25 101 1.0E-11 T 19-04-2016 IPR002645 STAS domain AMED_4441 dfc98ce5d427c3875ed759108e93c605 120 Gene3D G3DSA:3.30.750.24 17 111 5.6E-17 T 19-04-2016 IPR002645 STAS domain AMED_0398 dd8fa99c33d254b51d3ba785e0afad63 282 PIRSF PIRSF017393 1 282 1.3E-80 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0398 dd8fa99c33d254b51d3ba785e0afad63 282 Gene3D G3DSA:3.40.50.150 2 282 1.2E-94 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0398 dd8fa99c33d254b51d3ba785e0afad63 282 Pfam PF04672 S-adenosyl methyltransferase 8 281 1.1E-75 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0398 dd8fa99c33d254b51d3ba785e0afad63 282 SUPERFAMILY SSF53335 10 255 2.65E-46 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 Gene3D G3DSA:3.40.50.720 2 220 1.2E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 148 4.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 57 68 4.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 166 4.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 202 4.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 103 119 4.5E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 148 6.6E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 117 6.6E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 57 68 6.6E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 169 0.0033 T 19-04-2016 AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 54 219 1.9E-48 T 19-04-2016 AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 116 144 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 SUPERFAMILY SSF51735 2 220 5.94E-70 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PANTHER PTHR24322 129 160 1.9E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_9069 c96bbf96fdc6d0f700d543c7ec9fc301 225 PANTHER PTHR24322 6 113 1.9E-38 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4297 a1abdf2b0b3622e6aed295faa4ffbf33 70 Pfam PF09360 Iron-binding zinc finger CDGSH type 17 61 2.0E-15 T 19-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 AMED_4297 a1abdf2b0b3622e6aed295faa4ffbf33 70 SMART SM00704 22 66 2.2E-5 T 19-04-2016 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 178 196 4.1E-9 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 128 152 4.1E-9 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 298 317 4.1E-9 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 90 106 4.1E-9 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 PANTHER PTHR33371 1 315 5.9E-106 T 19-04-2016 AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 Pfam PF02470 MlaD protein 39 112 1.7E-14 T 19-04-2016 IPR003399 Mce/MlaD AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 292 8.4E-59 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7614 b1c7ef23253fda1ddaf2ae26a9d8b2c0 331 PANTHER PTHR33371:SF8 1 315 5.9E-106 T 19-04-2016 AMED_2627 a1ea11aa94a8f65d3b1f7c6a858f4337 366 Pfam PF07859 alpha/beta hydrolase fold 122 328 1.1E-68 T 19-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AMED_2627 a1ea11aa94a8f65d3b1f7c6a858f4337 366 PANTHER PTHR23024 106 341 4.2E-80 T 19-04-2016 AMED_2627 a1ea11aa94a8f65d3b1f7c6a858f4337 366 PANTHER PTHR23024:SF24 106 341 4.2E-80 T 19-04-2016 AMED_2627 a1ea11aa94a8f65d3b1f7c6a858f4337 366 Gene3D G3DSA:3.40.50.1820 51 350 1.1E-86 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2627 a1ea11aa94a8f65d3b1f7c6a858f4337 366 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 122 138 - T 19-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 AMED_2627 a1ea11aa94a8f65d3b1f7c6a858f4337 366 SUPERFAMILY SSF53474 84 340 1.15E-68 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 122 1.8E-18 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 SUPERFAMILY SSF88659 50 123 2.99E-16 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 Gene3D G3DSA:1.10.1740.10 2 61 5.6E-6 T 19-04-2016 AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 Gene3D G3DSA:1.10.10.10 62 123 3.7E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 PANTHER PTHR30173 1 128 6.6E-40 T 19-04-2016 AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 Pfam PF04545 Sigma-70, region 4 71 120 1.1E-11 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_0768 402502d8d806cd744849bf35a8a1f3d7 128 PANTHER PTHR30173:SF3 1 128 6.6E-40 T 19-04-2016 AMED_6314 9b9a8d1ae0697b4673f8ac30d0a6dce5 319 Gene3D G3DSA:3.40.190.10 75 174 2.2E-4 T 19-04-2016 AMED_6314 9b9a8d1ae0697b4673f8ac30d0a6dce5 319 SUPERFAMILY SSF53850 5 123 4.34E-21 T 19-04-2016 AMED_6314 9b9a8d1ae0697b4673f8ac30d0a6dce5 319 SUPERFAMILY SSF53850 153 311 4.34E-21 T 19-04-2016 AMED_3187 5c5e332403424bbdf52d45e3a7de7317 307 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 4 300 1.5E-123 T 19-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMED_3187 5c5e332403424bbdf52d45e3a7de7317 307 PANTHER PTHR30238 2 307 1.9E-145 T 19-04-2016 AMED_3187 5c5e332403424bbdf52d45e3a7de7317 307 PANTHER PTHR30238:SF0 2 307 1.9E-145 T 19-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AMED_3187 5c5e332403424bbdf52d45e3a7de7317 307 Pfam PF03741 Integral membrane protein TerC family 68 270 2.9E-56 T 19-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 AMED_5866 b6a2ade8c77011cff8981a2256bcbacc 304 PANTHER PTHR22911 17 289 9.7E-31 T 19-04-2016 AMED_5866 b6a2ade8c77011cff8981a2256bcbacc 304 SUPERFAMILY SSF103481 200 294 6.28E-12 T 19-04-2016 AMED_5866 b6a2ade8c77011cff8981a2256bcbacc 304 Pfam PF00892 EamA-like transporter family 17 143 4.0E-14 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_5866 b6a2ade8c77011cff8981a2256bcbacc 304 Pfam PF00892 EamA-like transporter family 160 291 2.4E-12 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_5866 b6a2ade8c77011cff8981a2256bcbacc 304 SUPERFAMILY SSF103481 46 144 1.7E-12 T 19-04-2016 AMED_3523 93bc213c0ce041bd2d7d5ad8ec2266d5 103 Pfam PF13602 Zinc-binding dehydrogenase 44 97 1.7E-6 T 19-04-2016 AMED_2817 49ed2c43ec4319fffcbd716aaacead3d 186 PANTHER PTHR10516 81 176 6.8E-29 T 19-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type AMED_2817 49ed2c43ec4319fffcbd716aaacead3d 186 Gene3D G3DSA:3.10.50.40 76 177 4.9E-29 T 19-04-2016 AMED_2817 49ed2c43ec4319fffcbd716aaacead3d 186 SUPERFAMILY SSF54534 53 179 3.14E-28 T 19-04-2016 AMED_2817 49ed2c43ec4319fffcbd716aaacead3d 186 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 94 176 3.0E-21 T 19-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 231 253 80.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 278 315 4200.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 195 230 2600.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 120 145 4100.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 326 347 620.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 147 169 14.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SMART SM00710 255 276 7200.0 T 19-04-2016 IPR006626 Parallel beta-helix repeat AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 SUPERFAMILY SSF51126 43 341 3.69E-27 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 Pfam PF13229 Right handed beta helix region 145 306 1.7E-15 T 19-04-2016 AMED_4848 e5ecce017b85b1c938639e8a8a765949 496 Gene3D G3DSA:2.160.20.10 67 349 3.6E-22 T 19-04-2016 IPR012334 Pectin lyase fold AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 PANTHER PTHR36923 1 64 3.8E-17 T 19-04-2016 AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 Gene3D G3DSA:3.30.70.20 1 64 2.4E-12 T 19-04-2016 AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 Pfam PF06902 Divergent 4Fe-4S mono-cluster 2 62 1.4E-11 T 19-04-2016 IPR010693 Divergent 4Fe-4S mono-cluster AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 SUPERFAMILY SSF54862 2 62 2.06E-11 T 19-04-2016 AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 PANTHER PTHR36923:SF1 1 64 3.8E-17 T 19-04-2016 AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 PRINTS PR00352 3Fe-4S ferredoxin signature 48 60 9.0E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 9.0E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_0874 2c82de8a229c2e994903f99984f4a73a 64 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 9.0E-5 T 19-04-2016 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 AMED_5604 d4660ef82c487640381a8b1930c67c2c 667 Gene3D G3DSA:3.40.50.2000 478 630 3.2E-29 T 19-04-2016 AMED_5604 d4660ef82c487640381a8b1930c67c2c 667 PANTHER PTHR12526 280 658 3.7E-65 T 19-04-2016 AMED_5604 d4660ef82c487640381a8b1930c67c2c 667 SUPERFAMILY SSF53756 281 652 2.01E-73 T 19-04-2016 AMED_5604 d4660ef82c487640381a8b1930c67c2c 667 Pfam PF00534 Glycosyl transferases group 1 480 632 2.4E-31 T 19-04-2016 IPR001296 Glycosyl transferase, family 1 AMED_5604 d4660ef82c487640381a8b1930c67c2c 667 Pfam PF13439 Glycosyltransferase Family 4 293 469 2.6E-29 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 Pfam PF01061 ABC-2 type transporter 26 235 3.4E-22 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PIRSF PIRSF006648 8 271 8.7E-26 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 215 234 6.2E-17 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 42 63 6.2E-17 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 159 183 6.2E-17 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 195 214 6.2E-17 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PRINTS PR00164 ABC-2 type transport system membrane protein signature 122 147 6.2E-17 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PANTHER PTHR30413:SF7 30 272 2.5E-31 T 19-04-2016 AMED_6709 3ca9049ff5172048e8df7baebab26f3f 273 PANTHER PTHR30413 30 272 2.5E-31 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_2715 f3cdf16bbd6c3af9275b6c050b2be615 759 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 396 749 2.3E-38 T 19-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like AMED_2715 f3cdf16bbd6c3af9275b6c050b2be615 759 PANTHER PTHR30518 534 751 6.1E-53 T 19-04-2016 AMED_2715 f3cdf16bbd6c3af9275b6c050b2be615 759 PANTHER PTHR30518 380 513 6.1E-53 T 19-04-2016 AMED_2715 f3cdf16bbd6c3af9275b6c050b2be615 759 PANTHER PTHR30518:SF2 534 751 6.1E-53 T 19-04-2016 AMED_2715 f3cdf16bbd6c3af9275b6c050b2be615 759 PANTHER PTHR30518:SF2 380 513 6.1E-53 T 19-04-2016 AMED_2715 f3cdf16bbd6c3af9275b6c050b2be615 759 Pfam PF02618 YceG-like family 433 750 8.2E-60 T 19-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 SUPERFAMILY SSF55031 227 344 4.04E-19 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 64 420 2.1E-98 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 PANTHER PTHR11014 50 432 9.9E-135 T 19-04-2016 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 Gene3D G3DSA:3.30.70.360 227 342 1.7E-24 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 PANTHER PTHR11014:SF63 50 432 9.9E-135 T 19-04-2016 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 Gene3D G3DSA:3.40.630.10 343 432 1.5E-91 T 19-04-2016 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 Gene3D G3DSA:3.40.630.10 52 223 1.5E-91 T 19-04-2016 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 Pfam PF01546 Peptidase family M20/M25/M40 118 428 1.6E-27 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 PIRSF PIRSF005962 51 433 6.0E-102 T 19-04-2016 IPR017439 Amidohydrolase GO:0016787 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 SUPERFAMILY SSF53187 52 242 5.29E-72 T 19-04-2016 AMED_0917 a0b8c35c717bb3d47dfccdc0821725f2 433 SUPERFAMILY SSF53187 343 432 5.29E-72 T 19-04-2016 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 PIRSF PIRSF006468 2 358 7.1E-109 T 19-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 Gene3D G3DSA:3.30.470.10 10 171 5.1E-54 T 19-04-2016 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 ProSitePatterns PS00770 Aminotransferases class-IV signature. 228 261 - T 19-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 Gene3D G3DSA:3.20.10.10 172 343 4.8E-58 T 19-04-2016 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 39 354 6.9E-102 T 19-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 PANTHER PTHR11825 14 355 1.2E-113 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 PANTHER PTHR11825:SF2 14 355 1.2E-113 T 19-04-2016 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 SUPERFAMILY SSF56752 12 353 3.14E-94 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_4755 1781e5a9a5b1789cee5fca1965ce79de 368 Pfam PF01063 Amino-transferase class IV 65 311 3.2E-23 T 19-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 Hamap MF_01396 ATP synthase subunit c [atpH]. 14 85 12.518 T 19-04-2016 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 Gene3D G3DSA:1.20.20.10 21 82 1.1E-18 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 Pfam PF00137 ATP synthase subunit C 21 81 2.3E-9 T 19-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 PRINTS PR00124 ATP synthase C subunit signature 58 83 2.2E-14 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 PRINTS PR00124 ATP synthase C subunit signature 20 39 2.2E-14 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 PRINTS PR00124 ATP synthase C subunit signature 41 56 2.2E-14 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMED_7780 788175daf714e00f14a0f02813e9eccd 87 SUPERFAMILY SSF81333 21 82 1.31E-14 T 19-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMED_4644 f6013ec8166ccd44d469570f71a584b2 200 PANTHER PTHR38847 16 200 6.1E-78 T 19-04-2016 AMED_4644 f6013ec8166ccd44d469570f71a584b2 200 Pfam PF14273 Domain of unknown function (DUF4360) 20 199 1.7E-65 T 19-04-2016 IPR025649 Protein of unknown function DUF4360 AMED_4644 f6013ec8166ccd44d469570f71a584b2 200 PANTHER PTHR38847:SF2 16 200 6.1E-78 T 19-04-2016 AMED_1667 32852fbd6d6aab39c7da8ddd1ed249c5 329 SUPERFAMILY SSF51726 47 322 1.7E-24 T 19-04-2016 AMED_1667 32852fbd6d6aab39c7da8ddd1ed249c5 329 Gene3D G3DSA:3.20.20.210 75 314 6.7E-9 T 19-04-2016 AMED_1667 32852fbd6d6aab39c7da8ddd1ed249c5 329 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 25 319 5.1E-15 T 19-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 AMED_6678 e569f312ebf1f5fc58a31d4aef36aa42 148 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 90 1.5E-4 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_6678 e569f312ebf1f5fc58a31d4aef36aa42 148 SUPERFAMILY SSF50475 13 146 1.32E-14 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6678 e569f312ebf1f5fc58a31d4aef36aa42 148 PANTHER PTHR35176 1 148 8.7E-23 T 19-04-2016 AMED_6678 e569f312ebf1f5fc58a31d4aef36aa42 148 PANTHER PTHR35176:SF2 1 148 8.7E-23 T 19-04-2016 AMED_6678 e569f312ebf1f5fc58a31d4aef36aa42 148 Gene3D G3DSA:2.30.110.10 13 146 6.0E-9 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_7192 d8bbbf5ee4094bf371be4b82e353df9d 211 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 95 115 - T 19-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AMED_7192 d8bbbf5ee4094bf371be4b82e353df9d 211 PANTHER PTHR11941:SF13 3 211 1.1E-59 T 19-04-2016 AMED_7192 d8bbbf5ee4094bf371be4b82e353df9d 211 Gene3D G3DSA:3.90.226.10 3 210 1.9E-60 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7192 d8bbbf5ee4094bf371be4b82e353df9d 211 PANTHER PTHR11941 3 211 1.1E-59 T 19-04-2016 AMED_7192 d8bbbf5ee4094bf371be4b82e353df9d 211 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 208 2.1E-38 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_7192 d8bbbf5ee4094bf371be4b82e353df9d 211 SUPERFAMILY SSF52096 3 210 2.31E-61 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PANTHER PTHR33371 1 314 8.4E-112 T 19-04-2016 AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PANTHER PTHR33371:SF8 1 314 8.4E-112 T 19-04-2016 AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 12 291 3.6E-60 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 90 106 1.3E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 28 48 1.3E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 177 195 1.3E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 128 152 1.3E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 246 265 1.3E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 297 316 1.3E-14 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1777 940350d74ba10c7b8207d3f5715a33ad 330 Pfam PF02470 MlaD protein 39 112 1.8E-12 T 19-04-2016 IPR003399 Mce/MlaD AMED_5200 0f909a1dfe718af7a296f0dd821d87a8 100 Pfam PF11239 Protein of unknown function (DUF3040) 1 79 4.3E-18 T 19-04-2016 IPR021401 Protein of unknown function DUF3040 AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 Pfam PF07883 Cupin domain 133 180 1.8E-8 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 SMART SM00530 23 78 4.9E-13 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 SUPERFAMILY SSF47413 18 81 3.94E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 PANTHER PTHR10245:SF9 16 192 5.6E-23 T 19-04-2016 AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 SUPERFAMILY SSF51182 29 187 2.13E-13 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 Gene3D G3DSA:2.60.120.10 106 191 1.2E-13 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 PANTHER PTHR10245 16 192 5.6E-23 T 19-04-2016 AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 Pfam PF01381 Helix-turn-helix 24 78 3.3E-11 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_3231 cc121fe5f84489fa4478f3ffe6430fea 207 Gene3D G3DSA:1.10.260.40 15 82 1.1E-17 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5050 201be4c8c8aab0dc5c648d2c121d5e33 132 SUPERFAMILY SSF56349 24 116 5.0E-18 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_5050 201be4c8c8aab0dc5c648d2c121d5e33 132 Pfam PF00589 Phage integrase family 16 109 7.4E-14 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_5050 201be4c8c8aab0dc5c648d2c121d5e33 132 Gene3D G3DSA:1.10.443.10 20 109 3.2E-20 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_0258 f4919b3d5bf1044df6c14f5165a75b6a 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 270 6.8E-22 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0258 f4919b3d5bf1044df6c14f5165a75b6a 295 PANTHER PTHR30151 44 293 4.1E-78 T 19-04-2016 AMED_0258 f4919b3d5bf1044df6c14f5165a75b6a 295 PANTHER PTHR30151:SF18 44 293 4.1E-78 T 19-04-2016 AMED_0258 f4919b3d5bf1044df6c14f5165a75b6a 295 Gene3D G3DSA:1.10.3720.10 86 279 2.6E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_0258 f4919b3d5bf1044df6c14f5165a75b6a 295 SUPERFAMILY SSF161098 87 270 2.09E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7030 015f88f5744f9d87f1675f6bb69fa55c 380 PANTHER PTHR30482 20 376 1.2E-72 T 19-04-2016 AMED_7030 015f88f5744f9d87f1675f6bb69fa55c 380 PANTHER PTHR30482:SF5 20 376 1.2E-72 T 19-04-2016 AMED_7030 015f88f5744f9d87f1675f6bb69fa55c 380 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 355 2.3E-29 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_2762 457a24e839d091ba0fa2b29245b5c0e3 449 SUPERFAMILY SSF53182 346 403 6.15E-20 T 19-04-2016 AMED_2762 457a24e839d091ba0fa2b29245b5c0e3 449 SUPERFAMILY SSF53182 169 315 6.15E-20 T 19-04-2016 AMED_2762 457a24e839d091ba0fa2b29245b5c0e3 449 Gene3D G3DSA:3.40.630.20 167 414 6.0E-10 T 19-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AMED_3193 0682a0f1b343f3b6324b6dcbf5ea1f99 310 Gene3D G3DSA:1.10.3720.10 85 308 1.7E-51 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3193 0682a0f1b343f3b6324b6dcbf5ea1f99 310 PANTHER PTHR30193:SF2 5 308 1.6E-76 T 19-04-2016 AMED_3193 0682a0f1b343f3b6324b6dcbf5ea1f99 310 PANTHER PTHR30193 5 308 1.6E-76 T 19-04-2016 AMED_3193 0682a0f1b343f3b6324b6dcbf5ea1f99 310 SUPERFAMILY SSF161098 79 299 4.06E-49 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3193 0682a0f1b343f3b6324b6dcbf5ea1f99 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 305 4.7E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Pfam PF07687 Peptidase dimerisation domain 161 256 6.3E-15 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 PIRSF PIRSF037238 1 353 1.5E-124 T 19-04-2016 IPR017150 Peptidase M20, glutamate carboxypeptidase AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Gene3D G3DSA:3.30.70.360 173 255 2.0E-23 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 PANTHER PTHR11014:SF64 1 357 4.1E-79 T 19-04-2016 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Gene3D G3DSA:3.40.630.10 294 352 1.6E-43 T 19-04-2016 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Gene3D G3DSA:3.40.630.10 2 172 1.6E-43 T 19-04-2016 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 SUPERFAMILY SSF55031 163 255 5.89E-19 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 PANTHER PTHR11014 1 357 4.1E-79 T 19-04-2016 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 Pfam PF01546 Peptidase family M20/M25/M40 63 349 6.4E-22 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 62 71 - T 19-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 SUPERFAMILY SSF53187 281 351 3.01E-41 T 19-04-2016 AMED_3457 c569ffc7a8b82313ea3b3a5f7d4b36bf 373 SUPERFAMILY SSF53187 2 172 3.01E-41 T 19-04-2016 AMED_2639 65cbf08abb87a2e6467675c463d0b579 221 Gene3D G3DSA:1.10.357.10 9 197 9.5E-27 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2639 65cbf08abb87a2e6467675c463d0b579 221 PANTHER PTHR30055 9 199 3.9E-16 T 19-04-2016 AMED_2639 65cbf08abb87a2e6467675c463d0b579 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 1.0E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2639 65cbf08abb87a2e6467675c463d0b579 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 3.4E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2639 65cbf08abb87a2e6467675c463d0b579 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 3.4E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2639 65cbf08abb87a2e6467675c463d0b579 221 SUPERFAMILY SSF46689 16 93 6.48E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7773 0492650459399a705d326deab072d8ec 144 Pfam PF10739 Protein of unknown function (DUF2550) 10 137 2.7E-44 T 19-04-2016 IPR019675 Protein of unknown function DUF2550 AMED_8773 389c596e8257d12cf7d13be0d842d18c 264 SUPERFAMILY SSF47413 11 72 1.18E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8773 389c596e8257d12cf7d13be0d842d18c 264 Gene3D G3DSA:1.10.260.40 13 65 3.7E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8616 5f24865abde3e3101b10eb929dfa6ae8 151 PANTHER PTHR33204 1 148 4.4E-50 T 19-04-2016 AMED_8616 5f24865abde3e3101b10eb929dfa6ae8 151 Pfam PF01638 HxlR-like helix-turn-helix 20 105 2.2E-21 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_8616 5f24865abde3e3101b10eb929dfa6ae8 151 PANTHER PTHR33204:SF14 1 148 4.4E-50 T 19-04-2016 AMED_8616 5f24865abde3e3101b10eb929dfa6ae8 151 Gene3D G3DSA:1.10.10.10 7 107 1.3E-29 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8616 5f24865abde3e3101b10eb929dfa6ae8 151 SUPERFAMILY SSF46785 11 143 1.19E-37 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4345 eb64d29cd5fc7eadce0e3565ba3644ea 312 Gene3D G3DSA:1.10.3720.10 18 300 2.3E-64 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4345 eb64d29cd5fc7eadce0e3565ba3644ea 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 300 1.4E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4345 eb64d29cd5fc7eadce0e3565ba3644ea 312 SUPERFAMILY SSF161098 73 297 2.09E-62 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4345 eb64d29cd5fc7eadce0e3565ba3644ea 312 PANTHER PTHR30406 1 302 6.3E-96 T 19-04-2016 AMED_4345 eb64d29cd5fc7eadce0e3565ba3644ea 312 PANTHER PTHR30406:SF2 1 302 6.3E-96 T 19-04-2016 AMED_8707 4ea4a96ea07aa548ec288dc706d3e7e5 103 SUPERFAMILY SSF54909 1 97 7.28E-23 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8707 4ea4a96ea07aa548ec288dc706d3e7e5 103 PANTHER PTHR34474 1 101 4.3E-19 T 19-04-2016 AMED_8707 4ea4a96ea07aa548ec288dc706d3e7e5 103 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 76 3.6E-17 T 19-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain AMED_8707 4ea4a96ea07aa548ec288dc706d3e7e5 103 Gene3D G3DSA:3.30.70.900 1 97 8.5E-30 T 19-04-2016 AMED_4492 6171bcdad03718422711fe48238277a8 491 SUPERFAMILY SSF51905 1 387 1.11E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4492 6171bcdad03718422711fe48238277a8 491 PANTHER PTHR23023:SF30 1 466 4.3E-230 T 19-04-2016 AMED_4492 6171bcdad03718422711fe48238277a8 491 PANTHER PTHR23023 1 466 4.3E-230 T 19-04-2016 AMED_4492 6171bcdad03718422711fe48238277a8 491 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 62 2.1E-7 T 19-04-2016 AMED_4492 6171bcdad03718422711fe48238277a8 491 Gene3D G3DSA:3.50.50.60 322 457 2.9E-7 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4492 6171bcdad03718422711fe48238277a8 491 Gene3D G3DSA:3.50.50.60 2 217 7.9E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_4492 6171bcdad03718422711fe48238277a8 491 Pfam PF00743 Flavin-binding monooxygenase-like 80 219 2.8E-13 T 19-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 SUPERFAMILY SSF51735 153 322 3.98E-20 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 PANTHER PTHR11695:SF607 8 337 9.8E-85 T 19-04-2016 AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 Gene3D G3DSA:3.40.50.720 170 320 1.9E-18 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 PANTHER PTHR11695 8 337 9.8E-85 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 21 132 8.5E-8 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 Gene3D G3DSA:3.90.180.10 3 82 9.8E-22 T 19-04-2016 IPR011032 GroES-like AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 Gene3D G3DSA:3.90.180.10 114 169 9.8E-22 T 19-04-2016 IPR011032 GroES-like AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 SUPERFAMILY SSF50129 165 174 2.43E-26 T 19-04-2016 IPR011032 GroES-like AMED_7375 0da58368d186a5bb5da2f30a295709f8 356 SUPERFAMILY SSF50129 2 136 2.43E-26 T 19-04-2016 IPR011032 GroES-like AMED_0743 80268961e30e88af15d261a4ffb3c233 157 PANTHER PTHR33540:SF2 5 145 2.9E-36 T 19-04-2016 AMED_0743 80268961e30e88af15d261a4ffb3c233 157 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 11 133 3.1E-30 T 19-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMED_0743 80268961e30e88af15d261a4ffb3c233 157 PANTHER PTHR33540 5 145 2.9E-36 T 19-04-2016 AMED_0743 80268961e30e88af15d261a4ffb3c233 157 Gene3D G3DSA:3.40.50.300 5 150 6.0E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0743 80268961e30e88af15d261a4ffb3c233 157 SUPERFAMILY SSF52540 21 134 6.37E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0743 80268961e30e88af15d261a4ffb3c233 157 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 13 141 9.8E-24 T 19-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMED_3334 d9cd98a0d201aae004301240e2e2c509 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 64 5.6E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3334 d9cd98a0d201aae004301240e2e2c509 212 PANTHER PTHR30055 1 191 4.7E-41 T 19-04-2016 AMED_3334 d9cd98a0d201aae004301240e2e2c509 212 Gene3D G3DSA:1.10.357.10 3 197 3.2E-44 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3334 d9cd98a0d201aae004301240e2e2c509 212 PANTHER PTHR30055:SF78 1 191 4.7E-41 T 19-04-2016 AMED_3334 d9cd98a0d201aae004301240e2e2c509 212 SUPERFAMILY SSF46689 6 80 3.4E-18 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3334 d9cd98a0d201aae004301240e2e2c509 212 SUPERFAMILY SSF48498 87 209 8.89E-29 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2737 e77d4535569e4a9e27773451f6acad75 308 Gene3D G3DSA:3.10.180.10 169 294 5.1E-29 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2737 e77d4535569e4a9e27773451f6acad75 308 SUPERFAMILY SSF54593 170 306 4.48E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2737 e77d4535569e4a9e27773451f6acad75 308 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 172 275 5.5E-15 T 19-04-2016 AMED_2737 e77d4535569e4a9e27773451f6acad75 308 Gene3D G3DSA:3.40.630.30 2 161 3.1E-38 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2737 e77d4535569e4a9e27773451f6acad75 308 Pfam PF13302 Acetyltransferase (GNAT) domain 8 145 1.7E-25 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2737 e77d4535569e4a9e27773451f6acad75 308 PANTHER PTHR36113 172 300 8.0E-35 T 19-04-2016 AMED_2737 e77d4535569e4a9e27773451f6acad75 308 PANTHER PTHR36113:SF2 172 300 8.0E-35 T 19-04-2016 AMED_2737 e77d4535569e4a9e27773451f6acad75 308 SUPERFAMILY SSF55729 1 151 3.24E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0842 c2939356e90ec5756b5f0892bdab73c9 336 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 21 287 1.3E-66 T 19-04-2016 IPR005274 Inner membrane protein YhjD AMED_0842 c2939356e90ec5756b5f0892bdab73c9 336 PANTHER PTHR30213 10 304 2.1E-51 T 19-04-2016 AMED_0842 c2939356e90ec5756b5f0892bdab73c9 336 Pfam PF03631 Virulence factor BrkB 35 288 1.1E-46 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_0842 c2939356e90ec5756b5f0892bdab73c9 336 PANTHER PTHR30213:SF1 10 304 2.1E-51 T 19-04-2016 AMED_6749 87544eec1ac33692bf79aa2a94167c4c 357 Pfam PF13560 Helix-turn-helix domain 11 76 2.1E-7 T 19-04-2016 AMED_6749 87544eec1ac33692bf79aa2a94167c4c 357 SMART SM00530 15 80 0.0016 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_6749 87544eec1ac33692bf79aa2a94167c4c 357 Gene3D G3DSA:1.10.260.40 7 63 3.4E-7 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_1197 62e80cabdc45c210d14e31d7d7ff1505 487 PANTHER PTHR33744:SF3 4 486 2.1E-61 T 19-04-2016 AMED_1197 62e80cabdc45c210d14e31d7d7ff1505 487 PANTHER PTHR33744 4 486 2.1E-61 T 19-04-2016 AMED_1197 62e80cabdc45c210d14e31d7d7ff1505 487 Pfam PF07905 Purine catabolism regulatory protein-like family 15 123 5.9E-31 T 19-04-2016 IPR012914 Purine catabolism PurC-like domain AMED_1197 62e80cabdc45c210d14e31d7d7ff1505 487 Pfam PF13556 PucR C-terminal helix-turn-helix domain 429 486 2.2E-20 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 SUPERFAMILY SSF53901 215 408 8.91E-63 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 8 248 2.9E-45 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 SMART SM00825 Beta-ketoacyl synthase 7 408 2.5E-13 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 Gene3D G3DSA:3.40.47.10 264 408 9.2E-49 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 Gene3D G3DSA:3.40.47.10 9 261 3.0E-61 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 19-04-2016 IPR018201 Beta-ketoacyl synthase, active site AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 SUPERFAMILY SSF53901 7 253 4.76E-64 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 PANTHER PTHR11712 8 407 5.8E-123 T 19-04-2016 AMED_3498 50ae4d8e7096261b875cd36355606ed7 411 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 367 2.5E-29 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMED_7613 7aa48a811e6cd429f17484c53a0a7597 332 PANTHER PTHR33371:SF5 7 331 8.6E-90 T 19-04-2016 AMED_7613 7aa48a811e6cd429f17484c53a0a7597 332 SUPERFAMILY SSF58100 183 318 2.88E-5 T 19-04-2016 AMED_7613 7aa48a811e6cd429f17484c53a0a7597 332 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 21 307 2.0E-68 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7613 7aa48a811e6cd429f17484c53a0a7597 332 Pfam PF02470 MlaD protein 44 117 2.0E-14 T 19-04-2016 IPR003399 Mce/MlaD AMED_7613 7aa48a811e6cd429f17484c53a0a7597 332 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 169 302 9.3E-7 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_7613 7aa48a811e6cd429f17484c53a0a7597 332 PANTHER PTHR33371 7 331 8.6E-90 T 19-04-2016 AMED_1522 5b9ce24455eacae20d273665d1b49b30 435 Gene3D G3DSA:2.120.10.30 47 242 4.9E-4 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_1522 5b9ce24455eacae20d273665d1b49b30 435 SUPERFAMILY SSF63825 58 237 3.79E-7 T 19-04-2016 AMED_6503 f401767d07af4f288d36b643ec970caf 308 PANTHER PTHR24220 3 224 1.6E-112 T 19-04-2016 AMED_6503 f401767d07af4f288d36b643ec970caf 308 SUPERFAMILY SSF52540 2 223 2.51E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6503 f401767d07af4f288d36b643ec970caf 308 PANTHER PTHR24220:SF523 3 224 1.6E-112 T 19-04-2016 AMED_6503 f401767d07af4f288d36b643ec970caf 308 SMART SM00382 26 229 3.7E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6503 f401767d07af4f288d36b643ec970caf 308 Pfam PF00005 ABC transporter 18 156 1.4E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_6503 f401767d07af4f288d36b643ec970caf 308 Gene3D G3DSA:3.40.50.300 1 223 5.3E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4028 5d28a52e823ce6064c02285898af18b5 856 PANTHER PTHR30489:SF0 242 848 5.6E-51 T 19-04-2016 AMED_4028 5d28a52e823ce6064c02285898af18b5 856 PANTHER PTHR30489 242 848 5.6E-51 T 19-04-2016 AMED_4028 5d28a52e823ce6064c02285898af18b5 856 Pfam PF02687 FtsX-like permease family 733 847 3.6E-16 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_4028 5d28a52e823ce6064c02285898af18b5 856 Pfam PF02687 FtsX-like permease family 275 389 8.5E-15 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_6406 327dd599695ea977cdb6dee1c3bdcb16 209 SUPERFAMILY SSF48613 12 174 6.37E-5 T 19-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 AMED_6406 327dd599695ea977cdb6dee1c3bdcb16 209 ProDom PD209215 WITH SIMILARITIES RP592 6 203 1.0E-20 T 19-04-2016 AMED_5290 0c890ee8934206d37cb69f3b30c10bb9 146 SUPERFAMILY SSF51182 13 123 2.25E-16 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5290 0c890ee8934206d37cb69f3b30c10bb9 146 Gene3D G3DSA:2.60.120.10 17 131 8.0E-21 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5290 0c890ee8934206d37cb69f3b30c10bb9 146 Pfam PF07883 Cupin domain 49 100 8.1E-11 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_2277 57b756e2219e34814055f27b4723aaaf 186 Pfam PF06475 Putative glycolipid-binding 8 179 2.9E-46 T 19-04-2016 IPR009467 Putative glycolipid-binding protein AMED_2277 57b756e2219e34814055f27b4723aaaf 186 SUPERFAMILY SSF159275 7 179 3.53E-39 T 19-04-2016 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Gene3D G3DSA:1.10.540.10 3 120 3.5E-21 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Gene3D G3DSA:1.20.140.10 222 369 1.5E-42 T 19-04-2016 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 SUPERFAMILY SSF47203 222 369 6.28E-41 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 221 369 2.7E-32 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Gene3D G3DSA:2.40.110.10 125 198 3.1E-8 T 19-04-2016 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 PANTHER PTHR10909:SF302 3 369 1.0E-88 T 19-04-2016 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 1.3E-19 T 19-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 SUPERFAMILY SSF56645 2 204 4.71E-38 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_3832 3b92f96dcf4a92fbabf4dab4d1a49d6b 371 PANTHER PTHR10909 3 369 1.0E-88 T 19-04-2016 AMED_9028 4c5bf0339bb606f8a16d492ab8ea9322 336 Pfam PF02361 Cobalt transport protein 6 195 4.0E-12 T 19-04-2016 IPR003339 ABC/ECF transporter, transmembrane component AMED_2812 b6ebcf329f0bcd263f0ecfe007509ae7 123 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 16 110 3.1E-8 T 19-04-2016 IPR022536 ESX-1 secretion-associated protein EspC AMED_7202 77bcf08c146d24c0b9d3e2db8c43e914 327 PANTHER PTHR30011:SF15 10 290 2.0E-14 T 19-04-2016 AMED_7202 77bcf08c146d24c0b9d3e2db8c43e914 327 Gene3D G3DSA:3.20.20.30 12 292 7.3E-36 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7202 77bcf08c146d24c0b9d3e2db8c43e914 327 Pfam PF00296 Luciferase-like monooxygenase 12 292 8.5E-34 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7202 77bcf08c146d24c0b9d3e2db8c43e914 327 PANTHER PTHR30011 10 290 2.0E-14 T 19-04-2016 AMED_7202 77bcf08c146d24c0b9d3e2db8c43e914 327 SUPERFAMILY SSF51679 1 300 8.1E-39 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 Gene3D G3DSA:3.50.50.60 268 344 3.6E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 Gene3D G3DSA:3.50.50.60 2 171 3.6E-36 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 3.3E-18 T 19-04-2016 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 3.3E-18 T 19-04-2016 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 3.3E-18 T 19-04-2016 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 3.3E-18 T 19-04-2016 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 PANTHER PTHR13789 1 343 5.2E-63 T 19-04-2016 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 SUPERFAMILY SSF51905 267 344 1.68E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 SUPERFAMILY SSF51905 2 166 1.68E-51 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2439 66de8bf64d61935d82f7cf3f97765ccc 368 Pfam PF01494 FAD binding domain 2 341 9.9E-20 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 Gene3D G3DSA:3.40.50.1010 4 185 1.3E-45 T 19-04-2016 IPR029060 PIN domain-like AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 PANTHER PTHR10133:SF27 5 307 1.2E-89 T 19-04-2016 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 194 278 2.3E-18 T 19-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 183 9.3E-46 T 19-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 SUPERFAMILY SSF88723 4 154 8.34E-37 T 19-04-2016 IPR029060 PIN domain-like AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 SUPERFAMILY SSF47807 194 306 1.64E-19 T 19-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 SMART SM00475 3 283 3.1E-74 T 19-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 Gene3D G3DSA:1.10.150.20 194 266 8.1E-17 T 19-04-2016 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 SMART SM00279 191 226 4.3E-9 T 19-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMED_4874 e551849ae08cbbdf2f43c5ab0e0b230a 314 PANTHER PTHR10133 5 307 1.2E-89 T 19-04-2016 AMED_2133 bf06a3d9e65f2896f03ec9485240c42e 274 Gene3D G3DSA:3.40.50.1820 9 270 1.6E-37 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2133 bf06a3d9e65f2896f03ec9485240c42e 274 Pfam PF12146 Serine aminopeptidase, S33 29 145 1.3E-13 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_2133 bf06a3d9e65f2896f03ec9485240c42e 274 PANTHER PTHR10992 9 272 1.8E-24 T 19-04-2016 AMED_2133 bf06a3d9e65f2896f03ec9485240c42e 274 SUPERFAMILY SSF53474 8 270 5.45E-42 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2142 3d98100540674700c4aa0a3a2bacad87 138 SUPERFAMILY SSF51182 29 126 4.62E-14 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_2142 3d98100540674700c4aa0a3a2bacad87 138 Pfam PF07883 Cupin domain 50 115 3.3E-8 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_2142 3d98100540674700c4aa0a3a2bacad87 138 Gene3D G3DSA:2.60.120.10 20 118 2.4E-14 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3052 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 SUPERFAMILY SSF52091 5 114 3.14E-17 T 19-04-2016 IPR002645 STAS domain AMED_3052 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 Pfam PF01740 STAS domain 20 97 6.9E-7 T 19-04-2016 IPR002645 STAS domain AMED_3052 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 Gene3D G3DSA:3.30.750.24 18 112 1.6E-13 T 19-04-2016 IPR002645 STAS domain AMED_3052 5ab1b7d6761fce7b5ae1e7d257d2b54c 127 PANTHER PTHR33745 5 126 1.5E-35 T 19-04-2016 AMED_3715 7ca118f019168e2ef469ef2b50c58c95 135 PANTHER PTHR33570:SF5 17 132 2.8E-25 T 19-04-2016 AMED_3715 7ca118f019168e2ef469ef2b50c58c95 135 SUPERFAMILY SSF51182 9 132 1.89E-29 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_3715 7ca118f019168e2ef469ef2b50c58c95 135 PANTHER PTHR33570 17 132 2.8E-25 T 19-04-2016 AMED_3715 7ca118f019168e2ef469ef2b50c58c95 135 Gene3D G3DSA:2.60.120.10 5 129 6.4E-29 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_3715 7ca118f019168e2ef469ef2b50c58c95 135 Pfam PF07883 Cupin domain 39 97 4.8E-13 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_8076 bf3d59fe97b71e67c6f44f2331e4cf87 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 6 210 6.0E-59 T 19-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 AMED_8076 bf3d59fe97b71e67c6f44f2331e4cf87 213 PANTHER PTHR20855:SF3 19 212 8.6E-45 T 19-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 AMED_8076 bf3d59fe97b71e67c6f44f2331e4cf87 213 PANTHER PTHR20855 19 212 8.6E-45 T 19-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AMED_8076 bf3d59fe97b71e67c6f44f2331e4cf87 213 Pfam PF03006 Haemolysin-III related 5 204 6.1E-40 T 19-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AMED_1458 ac40d03aea862cca45838ea096574813 126 Pfam PF13564 DoxX-like family 7 113 2.7E-29 T 19-04-2016 IPR032808 DoxX family AMED_7454 5e498722c291001615d04e325ffae4df 508 PANTHER PTHR10992 8 133 1.6E-41 T 19-04-2016 AMED_7454 5e498722c291001615d04e325ffae4df 508 PANTHER PTHR10992 182 280 1.6E-41 T 19-04-2016 AMED_7454 5e498722c291001615d04e325ffae4df 508 PANTHER PTHR10992:SF863 8 133 1.6E-41 T 19-04-2016 AMED_7454 5e498722c291001615d04e325ffae4df 508 PANTHER PTHR10992:SF863 371 489 1.6E-41 T 19-04-2016 AMED_7454 5e498722c291001615d04e325ffae4df 508 PANTHER PTHR10992 371 489 1.6E-41 T 19-04-2016 AMED_7454 5e498722c291001615d04e325ffae4df 508 SUPERFAMILY SSF53474 82 135 2.62E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7454 5e498722c291001615d04e325ffae4df 508 SUPERFAMILY SSF53474 182 236 2.62E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7454 5e498722c291001615d04e325ffae4df 508 SUPERFAMILY SSF53474 327 473 2.62E-20 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7454 5e498722c291001615d04e325ffae4df 508 Pfam PF00561 alpha/beta hydrolase fold 83 264 1.1E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7454 5e498722c291001615d04e325ffae4df 508 PANTHER PTHR10992:SF863 182 280 1.6E-41 T 19-04-2016 AMED_7454 5e498722c291001615d04e325ffae4df 508 Pfam PF08386 TAP-like protein 397 499 3.7E-19 T 19-04-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal AMED_7454 5e498722c291001615d04e325ffae4df 508 Gene3D G3DSA:3.40.50.1820 180 314 2.0E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7454 5e498722c291001615d04e325ffae4df 508 Gene3D G3DSA:3.40.50.1820 367 487 2.0E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7454 5e498722c291001615d04e325ffae4df 508 Gene3D G3DSA:3.40.50.1820 46 134 2.0E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_8438 9e8a4dd91cee0305b68570e9fce0df4d 274 SMART SM00849 32 264 1.2E-14 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8438 9e8a4dd91cee0305b68570e9fce0df4d 274 Gene3D G3DSA:3.60.15.10 1 232 1.9E-36 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8438 9e8a4dd91cee0305b68570e9fce0df4d 274 Pfam PF00753 Metallo-beta-lactamase superfamily 31 218 1.1E-19 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8438 9e8a4dd91cee0305b68570e9fce0df4d 274 PANTHER PTHR23200 13 268 1.9E-73 T 19-04-2016 AMED_8438 9e8a4dd91cee0305b68570e9fce0df4d 274 SUPERFAMILY SSF56281 1 264 1.09E-31 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_8438 9e8a4dd91cee0305b68570e9fce0df4d 274 PANTHER PTHR23200:SF38 13 268 1.9E-73 T 19-04-2016 AMED_6100 2612851adc95a97a89ed9f94be63aefb 157 Pfam PF05423 Mycobacterium membrane protein 29 157 3.8E-10 T 19-04-2016 IPR008693 Transport accessory protein MmpS AMED_2694 7580c8d96a44129280caa9d009653ad1 576 Pfam PF06276 Ferric iron reductase FhuF-like transporter 387 539 4.0E-29 T 19-04-2016 IPR022770 Ferric iron reductase FhuF domain AMED_2694 7580c8d96a44129280caa9d009653ad1 576 Pfam PF04183 IucA / IucC family 130 365 6.8E-70 T 19-04-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 AMED_2694 7580c8d96a44129280caa9d009653ad1 576 PANTHER PTHR34384 5 576 1.3E-128 T 19-04-2016 AMED_2694 7580c8d96a44129280caa9d009653ad1 576 PANTHER PTHR34384:SF5 5 576 1.3E-128 T 19-04-2016 AMED_4092 7a337a1e749fd8b001657645f13f4a83 442 Pfam PF00553 Cellulose binding domain 346 432 3.1E-19 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4092 7a337a1e749fd8b001657645f13f4a83 442 SUPERFAMILY SSF49384 341 438 2.09E-24 T 19-04-2016 IPR008965 Carbohydrate-binding domain GO:0030246 AMED_4092 7a337a1e749fd8b001657645f13f4a83 442 Gene3D G3DSA:2.60.40.290 345 432 3.5E-25 T 19-04-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 AMED_4092 7a337a1e749fd8b001657645f13f4a83 442 SMART SM00637 346 439 3.6E-27 T 19-04-2016 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 AMED_4092 7a337a1e749fd8b001657645f13f4a83 442 SUPERFAMILY SSF50685 39 230 6.63E-8 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Pfam PF01979 Amidohydrolase family 40 402 3.1E-28 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Gene3D G3DSA:2.30.40.10 339 407 5.2E-12 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Gene3D G3DSA:3.20.20.140 52 338 4.0E-53 T 19-04-2016 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 Gene3D G3DSA:2.30.40.10 28 51 1.5E-6 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 SUPERFAMILY SSF51556 43 351 9.53E-55 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 SUPERFAMILY SSF51338 353 425 8.88E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 SUPERFAMILY SSF51338 2 43 8.88E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 PANTHER PTHR11271 1 429 2.0E-61 T 19-04-2016 AMED_2000 b5ff77d6d40c05cb7ec9b6c310ffad0e 431 PANTHER PTHR11271:SF7 1 429 2.0E-61 T 19-04-2016 AMED_6842 514b8dc7c712185366f008e4bbd56264 152 Gene3D G3DSA:3.10.450.50 14 148 2.6E-37 T 19-04-2016 IPR032710 NTF2-like domain AMED_6842 514b8dc7c712185366f008e4bbd56264 152 SUPERFAMILY SSF54427 18 144 1.99E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_6842 514b8dc7c712185366f008e4bbd56264 152 Pfam PF13474 SnoaL-like domain 33 142 1.8E-7 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6842 514b8dc7c712185366f008e4bbd56264 152 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 21 144 1.9E-32 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_6846 514b8dc7c712185366f008e4bbd56264 152 Gene3D G3DSA:3.10.450.50 14 148 2.6E-37 T 19-04-2016 IPR032710 NTF2-like domain AMED_6846 514b8dc7c712185366f008e4bbd56264 152 SUPERFAMILY SSF54427 18 144 1.99E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_6846 514b8dc7c712185366f008e4bbd56264 152 Pfam PF13474 SnoaL-like domain 33 142 1.8E-7 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6846 514b8dc7c712185366f008e4bbd56264 152 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 21 144 1.9E-32 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 PANTHER PTHR11751 12 363 2.5E-125 T 19-04-2016 AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 TIGRFAM TIGR03539 DapC_actino: succinyldiaminopimelate transaminase 6 362 2.8E-177 T 19-04-2016 IPR019880 Succinyldiaminopimelate transaminase, DapC, actinobacteria AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 SUPERFAMILY SSF53383 19 362 5.59E-82 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 Gene3D G3DSA:3.40.640.10 42 240 2.4E-43 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 Gene3D G3DSA:3.90.1150.10 241 363 6.0E-22 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 PANTHER PTHR11751:SF354 12 363 2.5E-125 T 19-04-2016 AMED_1027 438a070bef9d1d3e66af7a6b469db881 363 Pfam PF00155 Aminotransferase class I and II 28 361 9.1E-45 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMED_1682 db3cc5cb66cc7d6c7f08af4d3a36cd70 191 PANTHER PTHR33452:SF1 15 168 1.2E-24 T 19-04-2016 AMED_1682 db3cc5cb66cc7d6c7f08af4d3a36cd70 191 Pfam PF07681 DoxX 35 120 3.2E-14 T 19-04-2016 IPR032808 DoxX family AMED_1682 db3cc5cb66cc7d6c7f08af4d3a36cd70 191 PANTHER PTHR33452 15 168 1.2E-24 T 19-04-2016 AMED_1457 c082f9f6c5c7e57662ce7f53c607f7df 178 Gene3D G3DSA:1.10.10.10 5 153 3.8E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1457 c082f9f6c5c7e57662ce7f53c607f7df 178 Pfam PF12802 MarR family 46 100 4.4E-8 T 19-04-2016 AMED_1457 c082f9f6c5c7e57662ce7f53c607f7df 178 SMART SM00347 35 138 0.0022 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_1457 c082f9f6c5c7e57662ce7f53c607f7df 178 SUPERFAMILY SSF46785 7 153 2.33E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1457 c082f9f6c5c7e57662ce7f53c607f7df 178 PANTHER PTHR33164:SF1 6 162 1.0E-22 T 19-04-2016 AMED_1457 c082f9f6c5c7e57662ce7f53c607f7df 178 PANTHER PTHR33164 6 162 1.0E-22 T 19-04-2016 AMED_5759 53de062d3e483fad9f048a0f1d6d1da4 125 Pfam PF10012 Uncharacterized protein conserved in bacteria (DUF2255) 5 118 9.2E-39 T 19-04-2016 IPR016888 Uncharacterised conserved protein UCP028498 AMED_5952 414f25bf563e5d1074f3d60bf45f2244 617 PANTHER PTHR33744 177 617 5.3E-27 T 19-04-2016 AMED_5952 414f25bf563e5d1074f3d60bf45f2244 617 Pfam PF13556 PucR C-terminal helix-turn-helix domain 552 610 4.2E-17 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_5952 414f25bf563e5d1074f3d60bf45f2244 617 SUPERFAMILY SSF55781 70 249 1.66E-28 T 19-04-2016 IPR029016 GAF domain-like AMED_5952 414f25bf563e5d1074f3d60bf45f2244 617 SMART SM00065 87 238 6.9E-21 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_5952 414f25bf563e5d1074f3d60bf45f2244 617 Gene3D G3DSA:3.30.450.40 62 244 2.0E-36 T 19-04-2016 IPR029016 GAF domain-like AMED_5952 414f25bf563e5d1074f3d60bf45f2244 617 Pfam PF13185 GAF domain 87 229 2.2E-17 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_6805 a95600efc540cfeacc1df9cfe940f03c 149 SUPERFAMILY SSF54427 16 141 2.45E-27 T 19-04-2016 IPR032710 NTF2-like domain AMED_6805 a95600efc540cfeacc1df9cfe940f03c 149 Gene3D G3DSA:3.10.450.50 15 142 7.1E-31 T 19-04-2016 IPR032710 NTF2-like domain AMED_6805 a95600efc540cfeacc1df9cfe940f03c 149 Pfam PF12680 SnoaL-like domain 25 130 6.3E-19 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 SUPERFAMILY SSF88659 93 152 1.85E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 Pfam PF04542 Sigma-70 region 2 9 70 2.7E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 PANTHER PTHR30173 3 153 2.9E-25 T 19-04-2016 AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 Gene3D G3DSA:1.10.10.10 96 152 2.2E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 153 3.4E-19 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 SUPERFAMILY SSF88946 3 89 9.42E-15 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 Gene3D G3DSA:1.10.1740.10 3 71 9.8E-12 T 19-04-2016 AMED_2280 2ce49adcde7fa62ef49a88dd1162326c 166 Pfam PF08281 Sigma-70, region 4 98 150 1.6E-13 T 19-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_3167 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 PANTHER PTHR33169 1 170 3.4E-49 T 19-04-2016 AMED_3167 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 Gene3D G3DSA:1.10.10.10 1 87 1.1E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3167 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 PANTHER PTHR33169:SF2 1 170 3.4E-49 T 19-04-2016 AMED_3167 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 SUPERFAMILY SSF46785 3 167 3.22E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3167 abb14ffe19ca7b09a1dec9cff9a1f3ad 173 Pfam PF03551 Transcriptional regulator PadR-like family 7 77 5.0E-15 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 PANTHER PTHR33392 7 202 3.0E-73 T 19-04-2016 AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 PANTHER PTHR33392:SF6 222 523 3.0E-73 T 19-04-2016 AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 157 328 4.6E-41 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 157 328 5.9E-33 T 19-04-2016 IPR004474 Cell envelope-related transcriptional attenuator domain AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 PANTHER PTHR33392 222 523 3.0E-73 T 19-04-2016 AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 PANTHER PTHR33392:SF6 7 202 3.0E-73 T 19-04-2016 AMED_7688 db0006799ecbceb78a0f83b9b00f3308 557 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 430 514 4.1E-17 T 19-04-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain AMED_3562 af5d8353dfdc45a047db39c7be33d072 148 SUPERFAMILY SSF55961 6 143 3.54E-22 T 19-04-2016 AMED_3562 af5d8353dfdc45a047db39c7be33d072 148 Gene3D G3DSA:3.30.530.20 5 144 2.8E-18 T 19-04-2016 IPR023393 START-like domain AMED_3562 af5d8353dfdc45a047db39c7be33d072 148 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 141 1.3E-21 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_4762 17c1728892200aabf5d3a5a02e971ff1 349 PANTHER PTHR10314 37 303 2.7E-35 T 19-04-2016 AMED_4762 17c1728892200aabf5d3a5a02e971ff1 349 Gene3D G3DSA:3.40.50.1100 121 296 3.0E-35 T 19-04-2016 AMED_4762 17c1728892200aabf5d3a5a02e971ff1 349 PANTHER PTHR10314:SF8 37 303 2.7E-35 T 19-04-2016 AMED_4762 17c1728892200aabf5d3a5a02e971ff1 349 Gene3D G3DSA:3.40.50.1100 34 116 1.3E-11 T 19-04-2016 AMED_4762 17c1728892200aabf5d3a5a02e971ff1 349 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 34 264 7.5E-28 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4762 17c1728892200aabf5d3a5a02e971ff1 349 SUPERFAMILY SSF53686 33 303 4.45E-44 T 19-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Pfam PF00486 Transcriptional regulatory protein, C terminal 26 76 4.2E-5 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF48452 96 256 6.07E-30 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF46894 2 93 1.22E-11 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SMART SM00862 17 93 1.2E-7 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PRINTS PR00364 Disease resistance protein signature 465 479 6.1E-7 T 19-04-2016 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PRINTS PR00364 Disease resistance protein signature 357 371 6.1E-7 T 19-04-2016 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PRINTS PR00364 Disease resistance protein signature 288 303 6.1E-7 T 19-04-2016 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Gene3D G3DSA:1.25.40.10 732 920 3.5E-14 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Pfam PF03704 Bacterial transcriptional activator domain 100 244 3.8E-35 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF48452 719 918 2.58E-13 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SUPERFAMILY SSF52540 262 528 6.46E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 SMART SM01043 100 244 3.3E-40 T 19-04-2016 IPR005158 Bacterial transcriptional activator domain AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 PANTHER PTHR35807 1 321 2.8E-55 T 19-04-2016 AMED_4776 5dfb91a9ce2cd0e5b787ea7e6ba0765d 1008 Gene3D G3DSA:1.10.10.10 25 96 4.2E-7 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9143 999b42674a743c30489a89e6f8e0472e 328 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 80 292 1.7E-9 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_9143 999b42674a743c30489a89e6f8e0472e 328 Gene3D G3DSA:3.20.20.80 35 313 9.9E-29 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_9143 999b42674a743c30489a89e6f8e0472e 328 SUPERFAMILY SSF51445 35 307 4.01E-27 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 Gene3D G3DSA:3.40.50.1860 119 214 1.7E-20 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 SUPERFAMILY SSF53681 119 225 2.13E-19 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 PANTHER PTHR21198 1 226 3.8E-41 T 19-04-2016 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 Gene3D G3DSA:3.40.50.1860 1 110 3.3E-33 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 PANTHER PTHR21198:SF6 1 226 3.8E-41 T 19-04-2016 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 SUPERFAMILY SSF53681 1 109 2.75E-24 T 19-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 225 5.1E-41 T 19-04-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AMED_4799 f1849a2fc1acd2f038941dc8cbcb6c9a 234 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 222 1.1E-47 T 19-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMED_8183 2c3cc473a6a6732bbc67e3382a36960a 287 PANTHER PTHR21234 4 232 1.8E-29 T 19-04-2016 IPR018017 Nucleoside phosphorylase AMED_8183 2c3cc473a6a6732bbc67e3382a36960a 287 SUPERFAMILY SSF53167 3 230 3.4E-38 T 19-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMED_8183 2c3cc473a6a6732bbc67e3382a36960a 287 Pfam PF01048 Phosphorylase superfamily 2 233 1.8E-30 T 19-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMED_8183 2c3cc473a6a6732bbc67e3382a36960a 287 Gene3D G3DSA:3.40.50.1580 3 234 3.0E-43 T 19-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMED_8183 2c3cc473a6a6732bbc67e3382a36960a 287 PANTHER PTHR21234:SF16 4 232 1.8E-29 T 19-04-2016 AMED_8440 18c4cd2b8f4e856190bcbe46dcb248fe 415 Gene3D G3DSA:1.20.1250.20 13 202 1.6E-18 T 19-04-2016 AMED_8440 18c4cd2b8f4e856190bcbe46dcb248fe 415 Gene3D G3DSA:1.20.1250.20 229 405 2.8E-11 T 19-04-2016 AMED_8440 18c4cd2b8f4e856190bcbe46dcb248fe 415 PANTHER PTHR23513:SF9 2 405 4.2E-109 T 19-04-2016 AMED_8440 18c4cd2b8f4e856190bcbe46dcb248fe 415 PANTHER PTHR23513 2 405 4.2E-109 T 19-04-2016 AMED_8440 18c4cd2b8f4e856190bcbe46dcb248fe 415 SUPERFAMILY SSF103473 19 406 4.45E-37 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8440 18c4cd2b8f4e856190bcbe46dcb248fe 415 Pfam PF05977 Transmembrane secretion effector 14 403 1.0E-34 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_8971 32d2e2537b6eaf9bda691c6246782781 297 PANTHER PTHR30193 1 296 1.3E-59 T 19-04-2016 AMED_8971 32d2e2537b6eaf9bda691c6246782781 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 284 8.5E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8971 32d2e2537b6eaf9bda691c6246782781 297 Gene3D G3DSA:1.10.3720.10 22 278 6.2E-53 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8971 32d2e2537b6eaf9bda691c6246782781 297 SUPERFAMILY SSF161098 24 285 1.12E-51 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1313 365f892fd37895fac11ee581a66eaaaa 163 PANTHER PTHR33204 1 144 2.4E-35 T 19-04-2016 AMED_1313 365f892fd37895fac11ee581a66eaaaa 163 Gene3D G3DSA:1.10.10.10 4 108 1.2E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1313 365f892fd37895fac11ee581a66eaaaa 163 Pfam PF01638 HxlR-like helix-turn-helix 20 107 3.4E-17 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_1313 365f892fd37895fac11ee581a66eaaaa 163 PANTHER PTHR33204:SF10 1 144 2.4E-35 T 19-04-2016 AMED_1313 365f892fd37895fac11ee581a66eaaaa 163 SUPERFAMILY SSF46785 8 147 2.14E-35 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4665 ffa437d2ea9897c14228c624ce6c1178 305 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 55 284 4.0E-12 T 19-04-2016 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 AMED_4665 ffa437d2ea9897c14228c624ce6c1178 305 SUPERFAMILY SSF56112 30 284 3.64E-21 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_4665 ffa437d2ea9897c14228c624ce6c1178 305 Gene3D G3DSA:3.90.1200.10 125 244 6.3E-9 T 19-04-2016 AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 PANTHER PTHR22845:SF4 9 367 1.1E-63 T 19-04-2016 AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 PRINTS PR00364 Disease resistance protein signature 216 230 2.9E-7 T 19-04-2016 AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 PRINTS PR00364 Disease resistance protein signature 129 143 2.9E-7 T 19-04-2016 AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 PRINTS PR00364 Disease resistance protein signature 51 66 2.9E-7 T 19-04-2016 AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 Gene3D G3DSA:3.40.50.300 29 169 2.8E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 SUPERFAMILY SSF52540 11 286 1.27E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 Pfam PF00931 NB-ARC domain 37 297 1.5E-14 T 19-04-2016 IPR002182 NB-ARC GO:0043531 AMED_6199 67968632116a7a5576cdf9d2d31c9198 456 PANTHER PTHR22845 9 367 1.1E-63 T 19-04-2016 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 PANTHER PTHR30173:SF3 22 211 1.2E-49 T 19-04-2016 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 SUPERFAMILY SSF88659 140 210 2.06E-14 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 47 207 3.0E-23 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 PANTHER PTHR30173 22 211 1.2E-49 T 19-04-2016 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 Pfam PF04542 Sigma-70 region 2 55 122 4.4E-8 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 SUPERFAMILY SSF88946 33 134 1.96E-14 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 Gene3D G3DSA:1.10.1740.10 36 145 3.3E-15 T 19-04-2016 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 Pfam PF04545 Sigma-70, region 4 158 206 8.1E-12 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_7510 71e6b4224afa0ed33429a4cb1de42efe 214 Gene3D G3DSA:1.10.10.10 151 211 1.0E-13 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8858 b86d1258ddebac34c5628761f0ed7576 61 SUPERFAMILY SSF55331 1 60 1.7E-16 T 19-04-2016 IPR014347 Tautomerase/MIF superfamily AMED_8858 b86d1258ddebac34c5628761f0ed7576 61 Pfam PF01361 Tautomerase enzyme 2 57 7.7E-12 T 19-04-2016 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 AMED_8858 b86d1258ddebac34c5628761f0ed7576 61 Gene3D G3DSA:3.30.429.20 1 61 1.1E-19 T 19-04-2016 AMED_4187 bd24c4391dd90383b66b51f9c7dc8fa7 184 Gene3D G3DSA:1.20.120.520 34 138 7.4E-7 T 19-04-2016 AMED_4187 bd24c4391dd90383b66b51f9c7dc8fa7 184 PANTHER PTHR35585:SF1 1 184 7.3E-25 T 19-04-2016 AMED_4187 bd24c4391dd90383b66b51f9c7dc8fa7 184 PANTHER PTHR35585 1 184 7.3E-25 T 19-04-2016 AMED_4187 bd24c4391dd90383b66b51f9c7dc8fa7 184 Pfam PF01814 Hemerythrin HHE cation binding domain 9 124 1.5E-8 T 19-04-2016 IPR012312 Haemerythrin-like AMED_2420 c71b2b7f15602e728c545df116150ad3 377 SUPERFAMILY SSF56601 13 361 5.79E-80 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2420 c71b2b7f15602e728c545df116150ad3 377 Gene3D G3DSA:3.40.710.10 13 371 2.1E-75 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2420 c71b2b7f15602e728c545df116150ad3 377 PANTHER PTHR22935:SF77 13 357 4.0E-71 T 19-04-2016 AMED_2420 c71b2b7f15602e728c545df116150ad3 377 Pfam PF00144 Beta-lactamase 11 358 6.4E-65 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_2420 c71b2b7f15602e728c545df116150ad3 377 PANTHER PTHR22935 13 357 4.0E-71 T 19-04-2016 AMED_6965 43e28921407b3c3dca7d628fcbacd75e 264 Pfam PF03301 Tryptophan 2,3-dioxygenase 188 263 5.5E-20 T 19-04-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 AMED_6965 43e28921407b3c3dca7d628fcbacd75e 264 Pfam PF03301 Tryptophan 2,3-dioxygenase 8 137 8.6E-39 T 19-04-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 AMED_6965 43e28921407b3c3dca7d628fcbacd75e 264 SUPERFAMILY SSF140959 13 263 8.5E-79 T 19-04-2016 AMED_6965 43e28921407b3c3dca7d628fcbacd75e 264 PANTHER PTHR10138:SF0 5 264 4.2E-67 T 19-04-2016 AMED_6965 43e28921407b3c3dca7d628fcbacd75e 264 PANTHER PTHR10138 5 264 4.2E-67 T 19-04-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 AMED_6965 43e28921407b3c3dca7d628fcbacd75e 264 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 7 264 35.688 T 19-04-2016 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|UniPathway: UPA00333 AMED_2751 a48bf62c1d978ccca9b05b1409d1bd40 198 Pfam PF14103 Domain of unknown function (DUF4276) 8 190 1.9E-16 T 19-04-2016 IPR025455 Protein of unknown function DUF4276 AMED_6926 6487c27aed6ec394b463ba954d3cc828 460 SUPERFAMILY SSF53756 137 379 5.86E-7 T 19-04-2016 AMED_3797 fa11c881664801d88835517eee026f61 227 PANTHER PTHR30390 32 214 4.1E-50 T 19-04-2016 AMED_3797 fa11c881664801d88835517eee026f61 227 Pfam PF13580 SIS domain 44 174 2.1E-17 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMED_3797 fa11c881664801d88835517eee026f61 227 PANTHER PTHR30390:SF6 32 214 4.1E-50 T 19-04-2016 AMED_3797 fa11c881664801d88835517eee026f61 227 Gene3D G3DSA:3.40.50.10490 38 215 3.4E-45 T 19-04-2016 AMED_3797 fa11c881664801d88835517eee026f61 227 SUPERFAMILY SSF53697 40 216 1.05E-39 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 SUPERFAMILY SSF103473 244 453 2.35E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 SUPERFAMILY SSF103473 4 189 2.35E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 Pfam PF07690 Major Facilitator Superfamily 11 405 1.7E-42 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 Gene3D G3DSA:1.20.1250.20 5 185 7.5E-27 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 Gene3D G3DSA:1.20.1250.20 259 453 1.6E-21 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 100 120 5.4E-8 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 334 354 5.4E-8 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 130 154 5.4E-8 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 5.4E-8 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 PANTHER PTHR23501:SF73 3 451 9.9E-122 T 19-04-2016 AMED_5648 87525970faffb772acbdc0f82a86ddd2 477 PANTHER PTHR23501 3 451 9.9E-122 T 19-04-2016 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 PANTHER PTHR10992 3 265 1.8E-139 T 19-04-2016 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 SUPERFAMILY SSF53474 8 264 5.59E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 PANTHER PTHR10992:SF892 3 265 1.8E-139 T 19-04-2016 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 43 58 2.4E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 209 223 2.4E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.4E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.4E-9 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 Pfam PF12697 Alpha/beta hydrolase family 20 258 6.5E-23 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7426 1d87a23f59ff4b4224fc65bca5212c29 266 Gene3D G3DSA:3.40.50.1820 8 264 1.3E-66 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7800 6e592c2898d010bcc056960809a1a4b4 112 Pfam PF12721 RIP homotypic interaction motif 85 109 2.5E-6 T 19-04-2016 IPR025735 RHIM domain AMED_0999 9b71b2e039f728aaaafaa0f88efe692c 309 SUPERFAMILY SSF53474 70 278 7.6E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0999 9b71b2e039f728aaaafaa0f88efe692c 309 Gene3D G3DSA:3.40.50.1820 55 306 1.0E-73 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0999 9b71b2e039f728aaaafaa0f88efe692c 309 Pfam PF01674 Lipase (class 2) 72 245 1.1E-12 T 19-04-2016 IPR002918 Lipase EstA/Esterase EstB GO:0016787 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_6324 414e6bdecbf9e09dbf3dfde52b668cfd 154 SUPERFAMILY SSF55729 3 146 4.46E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6324 414e6bdecbf9e09dbf3dfde52b668cfd 154 Pfam PF13673 Acetyltransferase (GNAT) domain 37 143 2.4E-11 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6324 414e6bdecbf9e09dbf3dfde52b668cfd 154 Gene3D G3DSA:3.40.630.30 3 144 8.0E-23 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 Gene3D G3DSA:3.50.50.60 4 171 5.9E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 Gene3D G3DSA:3.50.50.60 265 333 5.9E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 SUPERFAMILY SSF51905 6 165 2.64E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 SUPERFAMILY SSF51905 264 366 2.64E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 Pfam PF01494 FAD binding domain 5 314 3.3E-24 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 1.4E-11 T 19-04-2016 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.4E-11 T 19-04-2016 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 1.4E-11 T 19-04-2016 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 PANTHER PTHR13789 6 366 7.3E-102 T 19-04-2016 AMED_7840 1b67e489513b2359e1c86ae1da22cb6d 409 PANTHER PTHR13789:SF251 6 366 7.3E-102 T 19-04-2016 AMED_9162 3879eb1f9ad20c375c6f5f9badceeb8c 172 Pfam PF03713 Domain of unknown function (DUF305) 25 168 5.4E-27 T 19-04-2016 IPR005183 Domain of unknown function DUF305 AMED_9162 3879eb1f9ad20c375c6f5f9badceeb8c 172 Gene3D G3DSA:1.20.1260.10 19 169 6.9E-29 T 19-04-2016 IPR012347 Ferritin-related AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 TIGRFAM TIGR03689 pup_AAA: proteasome ATPase 21 540 5.8E-255 T 19-04-2016 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 Gene3D G3DSA:3.40.50.300 193 408 6.1E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 Hamap MF_02112 Proteasome-associated ATPase [mpa]. 23 541 50.343 T 19-04-2016 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 Pfam PF16450 Proteasomal ATPase OB/ID domain 65 200 1.1E-50 T 19-04-2016 IPR032501 Proteasomal ATPase, OB/ID domain AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 SMART SM00382 239 394 5.8E-22 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 SUPERFAMILY SSF52540 201 406 2.6E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 SUPERFAMILY SSF52540 450 502 2.6E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 243 392 1.1E-47 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 ProSitePatterns PS00674 AAA-protein family signature. 362 380 - T 19-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMED_4905 67a2e23f7a380f18c82b5894976a415b 562 PANTHER PTHR23077 199 420 2.5E-84 T 19-04-2016 AMED_2688 507f1ddb894348d05f05f48385bb4329 316 Pfam PF00296 Luciferase-like monooxygenase 13 293 1.5E-49 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2688 507f1ddb894348d05f05f48385bb4329 316 SUPERFAMILY SSF51679 4 309 2.47E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2688 507f1ddb894348d05f05f48385bb4329 316 Gene3D G3DSA:3.20.20.30 3 305 4.2E-50 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_2688 507f1ddb894348d05f05f48385bb4329 316 PANTHER PTHR30011 1 316 7.7E-31 T 19-04-2016 AMED_2688 507f1ddb894348d05f05f48385bb4329 316 TIGRFAM TIGR03841 F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family 12 300 5.6E-99 T 19-04-2016 IPR022526 F420-dependent oxidoreductase, Rv3093c AMED_5330 5e2f654dc880ed062ddeb124d088f205 141 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 26 122 2.1E-33 T 19-04-2016 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 AMED_4137 f40649bb470ada74c0dbe9ab92005b58 100 SUPERFAMILY SSF141694 2 97 1.1E-19 T 19-04-2016 AMED_4137 f40649bb470ada74c0dbe9ab92005b58 100 Gene3D G3DSA:2.40.30.100 3 96 9.4E-19 T 19-04-2016 AMED_4137 f40649bb470ada74c0dbe9ab92005b58 100 Pfam PF08922 Domain of unknown function (DUF1905) 5 95 3.3E-30 T 19-04-2016 IPR015018 Protein of unknown function DUF1905 AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 Gene3D G3DSA:3.40.50.720 2 200 1.8E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PANTHER PTHR24322:SF57 10 136 2.5E-32 T 19-04-2016 AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PANTHER PTHR24322:SF57 152 183 2.5E-32 T 19-04-2016 AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-13 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PANTHER PTHR24322 10 136 2.5E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 PANTHER PTHR24322 152 183 2.5E-32 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 Pfam PF00106 short chain dehydrogenase 7 191 2.5E-37 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3566 eee6a4731b88f3a771801005cd1f14da 254 SUPERFAMILY SSF51735 1 196 4.12E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8747 191770a606d76e8c87450a30b2019532 204 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 23 201 4.2E-70 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_8747 191770a606d76e8c87450a30b2019532 204 Pfam PF01227 GTP cyclohydrolase I 23 200 6.9E-74 T 19-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_8747 191770a606d76e8c87450a30b2019532 204 Gene3D G3DSA:3.30.1130.10 71 202 6.0E-58 T 19-04-2016 AMED_8747 191770a606d76e8c87450a30b2019532 204 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 18 201 40.461 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_8747 191770a606d76e8c87450a30b2019532 204 Gene3D G3DSA:1.10.286.10 17 68 5.3E-22 T 19-04-2016 AMED_8747 191770a606d76e8c87450a30b2019532 204 PANTHER PTHR11109 21 203 5.7E-103 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_8747 191770a606d76e8c87450a30b2019532 204 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 128 138 - T 19-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMED_8747 191770a606d76e8c87450a30b2019532 204 SUPERFAMILY SSF55620 16 201 9.64E-75 T 19-04-2016 AMED_5133 a1ab003bc8bb073096f66ac2b030044c 97 Gene3D G3DSA:1.10.357.10 2 91 1.0E-4 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0449 36c7ca37141de08824ea1ef1f6e6e998 168 Pfam PF10698 Protein of unknown function (DUF2505) 6 164 6.4E-46 T 19-04-2016 IPR019639 Protein of unknown function DUF2505 AMED_4716 9eaa762cc9292cfcfd7da59d38a926bf 79 Gene3D G3DSA:1.10.357.10 2 62 5.4E-4 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4395 8b2f241965f41ece55f2549a9e021dc7 323 SUPERFAMILY SSF56219 108 321 6.54E-24 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_4395 8b2f241965f41ece55f2549a9e021dc7 323 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 114 314 1.9E-13 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_4395 8b2f241965f41ece55f2549a9e021dc7 323 Gene3D G3DSA:3.60.10.10 109 259 2.4E-5 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMED_7101 24f83880d9a301364925e49617708d52 401 Pfam PF01494 FAD binding domain 2 344 2.2E-22 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_7101 24f83880d9a301364925e49617708d52 401 PANTHER PTHR13789 2 382 8.2E-66 T 19-04-2016 AMED_7101 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 149 164 6.1E-20 T 19-04-2016 AMED_7101 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 6.1E-20 T 19-04-2016 AMED_7101 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 298 314 6.1E-20 T 19-04-2016 AMED_7101 24f83880d9a301364925e49617708d52 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 6.1E-20 T 19-04-2016 AMED_7101 24f83880d9a301364925e49617708d52 401 Gene3D G3DSA:3.50.50.60 2 175 8.1E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7101 24f83880d9a301364925e49617708d52 401 Gene3D G3DSA:3.50.50.60 273 349 8.1E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7101 24f83880d9a301364925e49617708d52 401 SUPERFAMILY SSF51905 278 357 6.83E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7101 24f83880d9a301364925e49617708d52 401 SUPERFAMILY SSF51905 2 170 6.83E-54 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_2609 57540f5b70c55cefc91b0cef5019dcf4 227 SUPERFAMILY SSF53474 1 197 5.31E-14 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2609 57540f5b70c55cefc91b0cef5019dcf4 227 Gene3D G3DSA:3.40.50.1820 1 197 3.0E-12 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1794 521e66e8d0eb219c28f62bab7cb5eefc 201 PANTHER PTHR34374 14 201 4.1E-33 T 19-04-2016 AMED_1794 521e66e8d0eb219c28f62bab7cb5eefc 201 Pfam PF02620 Uncharacterized ACR, COG1399 77 186 1.4E-27 T 19-04-2016 IPR003772 Protein of unknown function DUF177 AMED_5215 030239926129d9f746b0bb7c43d0e600 173 PANTHER PTHR35585:SF1 7 173 1.4E-15 T 19-04-2016 AMED_5215 030239926129d9f746b0bb7c43d0e600 173 PANTHER PTHR35585 7 173 1.4E-15 T 19-04-2016 AMED_0404 791a87255f60e443c5b5c4142362b6c8 130 Pfam PF13115 YtkA-like 37 112 2.4E-6 T 19-04-2016 IPR032693 YtkA-like domain AMED_0727 abc468568045b76b40de8cdda17aa746 187 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 58 187 32.672 T 19-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid AMED_0727 abc468568045b76b40de8cdda17aa746 187 Gene3D G3DSA:3.30.230.10 62 187 3.1E-49 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMED_0727 abc468568045b76b40de8cdda17aa746 187 SUPERFAMILY SSF54211 63 187 1.93E-44 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMED_0727 abc468568045b76b40de8cdda17aa746 187 Pfam PF00380 Ribosomal protein S9/S16 67 187 6.6E-44 T 19-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMED_0727 abc468568045b76b40de8cdda17aa746 187 PANTHER PTHR21569 55 187 5.7E-63 T 19-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMED_0727 abc468568045b76b40de8cdda17aa746 187 ProSitePatterns PS00360 Ribosomal protein S9 signature. 126 144 - T 19-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMED_5472 d9635ce1621e6fde61abdaec79c1ce07 285 Gene3D G3DSA:3.40.109.10 76 277 2.5E-17 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5472 d9635ce1621e6fde61abdaec79c1ce07 285 SUPERFAMILY SSF55469 76 105 1.51E-9 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5472 d9635ce1621e6fde61abdaec79c1ce07 285 SUPERFAMILY SSF55469 133 277 1.51E-9 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5472 d9635ce1621e6fde61abdaec79c1ce07 285 Pfam PF00881 Nitroreductase family 80 249 1.9E-8 T 19-04-2016 IPR029479 Nitroreductase AMED_0413 f527b31cbc916d5f5fe72ff53d868abd 262 Gene3D G3DSA:3.60.40.10 21 253 6.5E-6 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_0413 f527b31cbc916d5f5fe72ff53d868abd 262 SUPERFAMILY SSF81606 20 254 6.28E-7 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_0413 f527b31cbc916d5f5fe72ff53d868abd 262 Pfam PF13672 Protein phosphatase 2C 32 222 1.4E-9 T 19-04-2016 AMED_8078 f567be6e737d0cf1539b555bf88ea96c 157 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 80 8.4E-23 T 19-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8078 f567be6e737d0cf1539b555bf88ea96c 157 Gene3D G3DSA:1.20.1290.10 18 153 5.8E-47 T 19-04-2016 IPR029032 AhpD-like AMED_8078 f567be6e737d0cf1539b555bf88ea96c 157 Pfam PF02627 Carboxymuconolactone decarboxylase family 28 96 2.9E-19 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_8078 f567be6e737d0cf1539b555bf88ea96c 157 SUPERFAMILY SSF69118 20 152 1.28E-39 T 19-04-2016 IPR029032 AhpD-like AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 PANTHER PTHR11926 16 356 1.2E-14 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 PANTHER PTHR11926:SF394 16 356 1.2E-14 T 19-04-2016 AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 Gene3D G3DSA:3.40.50.2000 2 236 1.6E-41 T 19-04-2016 AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 Gene3D G3DSA:3.40.50.2000 263 355 2.3E-10 T 19-04-2016 AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 281 357 1.5E-9 T 19-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 SUPERFAMILY SSF53756 2 384 1.06E-74 T 19-04-2016 AMED_5398 bce89fc9f57e6c0e06dc0724fef8c790 389 Pfam PF06722 Protein of unknown function (DUF1205) 179 273 6.0E-24 T 19-04-2016 IPR010610 Domain of unknown function DUF1205 AMED_5957 b4f4eee94d4f7ed9f45a86054c47c19b 312 Pfam PF13280 WYL domain 138 305 2.2E-31 T 19-04-2016 IPR026881 WYL domain AMED_5957 b4f4eee94d4f7ed9f45a86054c47c19b 312 Gene3D G3DSA:1.10.10.10 2 61 1.7E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5957 b4f4eee94d4f7ed9f45a86054c47c19b 312 Pfam PF08279 HTH domain 11 58 1.7E-12 T 19-04-2016 IPR013196 Helix-turn-helix, type 11 AMED_5957 b4f4eee94d4f7ed9f45a86054c47c19b 312 PANTHER PTHR34580 2 311 1.9E-31 T 19-04-2016 AMED_5957 b4f4eee94d4f7ed9f45a86054c47c19b 312 SUPERFAMILY SSF46785 2 59 8.24E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4642 624737d78da75417bb70801fc61f632c 125 SUPERFAMILY SSF54427 7 114 2.24E-21 T 19-04-2016 IPR032710 NTF2-like domain AMED_4642 624737d78da75417bb70801fc61f632c 125 Gene3D G3DSA:3.10.450.50 8 114 5.2E-22 T 19-04-2016 IPR032710 NTF2-like domain AMED_4642 624737d78da75417bb70801fc61f632c 125 Pfam PF14534 Domain of unknown function (DUF4440) 7 106 7.5E-19 T 19-04-2016 IPR027843 Domain of unknown function DUF4440 AMED_6179 b0e0ac7135005b87149cbb914a3de67f 133 SUPERFAMILY SSF56349 1 106 2.06E-13 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_6179 b0e0ac7135005b87149cbb914a3de67f 133 Gene3D G3DSA:1.10.443.10 1 107 1.4E-13 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 SMART SM00882 5 227 4.5E-34 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 Pfam PF01144 Coenzyme A transferase 6 205 3.9E-38 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 SUPERFAMILY SSF100950 3 270 4.28E-71 T 19-04-2016 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 Gene3D G3DSA:3.40.1080.10 156 281 3.2E-72 T 19-04-2016 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 Gene3D G3DSA:3.40.1080.10 3 117 3.2E-72 T 19-04-2016 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 PANTHER PTHR13707:SF34 1 258 1.3E-66 T 19-04-2016 AMED_3378 e7c48c49fe87da3e75b521b31cad6434 287 PANTHER PTHR13707 1 258 1.3E-66 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_2408 acfe6303b7cba1166bb0f2a4881615bd 223 Gene3D G3DSA:3.40.50.620 17 147 7.7E-36 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_2408 acfe6303b7cba1166bb0f2a4881615bd 223 PANTHER PTHR30336 1 214 4.0E-56 T 19-04-2016 AMED_2408 acfe6303b7cba1166bb0f2a4881615bd 223 Pfam PF02698 DUF218 domain 36 141 2.9E-18 T 19-04-2016 IPR003848 Domain of unknown function DUF218 AMED_2408 acfe6303b7cba1166bb0f2a4881615bd 223 PANTHER PTHR30336:SF5 1 214 4.0E-56 T 19-04-2016 AMED_2903 0e8d1ecfa25fdb382039896d9554e5ba 165 PANTHER PTHR38479 1 162 4.4E-42 T 19-04-2016 AMED_2903 0e8d1ecfa25fdb382039896d9554e5ba 165 Pfam PF06224 Winged helix DNA-binding domain 32 159 4.5E-30 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_2903 0e8d1ecfa25fdb382039896d9554e5ba 165 PANTHER PTHR38479:SF2 1 162 4.4E-42 T 19-04-2016 AMED_6922 4558abdb64a68a5a78a484d626da367e 235 Pfam PF13471 Transglutaminase-like superfamily 123 221 1.0E-19 T 19-04-2016 IPR032708 Microcin J25-processing protein McjB, C-terminal AMED_6922 4558abdb64a68a5a78a484d626da367e 235 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 20 86 6.8E-11 T 19-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 AMED_6287 23e15d16eacaf50218a30cc4b8f748a3 203 SUPERFAMILY SSF55469 1 193 4.97E-33 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_6287 23e15d16eacaf50218a30cc4b8f748a3 203 PANTHER PTHR23026:SF90 1 202 1.1E-34 T 19-04-2016 AMED_6287 23e15d16eacaf50218a30cc4b8f748a3 203 Gene3D G3DSA:3.40.109.10 1 201 2.9E-30 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_6287 23e15d16eacaf50218a30cc4b8f748a3 203 PANTHER PTHR23026 1 202 1.1E-34 T 19-04-2016 AMED_6287 23e15d16eacaf50218a30cc4b8f748a3 203 Pfam PF00881 Nitroreductase family 11 175 2.3E-20 T 19-04-2016 IPR029479 Nitroreductase AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 421 516 1.0E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 6 124 1.0E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Gene3D G3DSA:3.50.50.60 172 278 1.0E-63 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 PANTHER PTHR11552 6 258 3.2E-35 T 19-04-2016 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 PANTHER PTHR11552 276 535 3.2E-35 T 19-04-2016 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Pfam PF00732 GMC oxidoreductase 9 258 2.1E-17 T 19-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 SUPERFAMILY SSF51905 6 276 1.3E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 SUPERFAMILY SSF51905 454 516 1.3E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 Pfam PF05199 GMC oxidoreductase 451 508 3.1E-11 T 19-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 PANTHER PTHR11552:SF92 6 258 3.2E-35 T 19-04-2016 AMED_6867 1318ae69bf6c44fe76bdcf2c5c001b9f 550 PANTHER PTHR11552:SF92 276 535 3.2E-35 T 19-04-2016 AMED_9244 969f8406054ed9f515d73cb3dac15e7b 92 Pfam PF11755 Protein of unknown function (DUF3311) 20 72 2.1E-12 T 19-04-2016 IPR021741 Protein of unknown function DUF3311 AMED_2766 f47839a3c3c8bc7939ac80c69388ba62 168 Pfam PF02441 Flavoprotein 79 107 9.0E-6 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_2766 f47839a3c3c8bc7939ac80c69388ba62 168 SUPERFAMILY SSF52507 9 149 1.7E-15 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_2766 f47839a3c3c8bc7939ac80c69388ba62 168 Gene3D G3DSA:3.40.50.1950 9 149 6.7E-13 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMED_5291 1cc44864af8d3f52768ad1d6c220e8d9 133 Pfam PF06993 Protein of unknown function (DUF1304) 11 131 5.9E-25 T 19-04-2016 IPR009732 Protein of unknown function DUF1304 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 SMART SM00892 405 618 4.8E-59 T 19-04-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 Pfam PF01223 DNA/RNA non-specific endonuclease 401 614 3.9E-50 T 19-04-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 Pfam PF13365 Trypsin-like peptidase domain 126 274 8.9E-22 T 19-04-2016 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 Gene3D G3DSA:2.40.10.10 192 282 2.2E-19 T 19-04-2016 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 SMART SM00477 406 618 1.6E-20 T 19-04-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 PANTHER PTHR13966 402 611 3.0E-32 T 19-04-2016 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 SUPERFAMILY SSF54060 400 611 3.41E-46 T 19-04-2016 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 Gene3D G3DSA:3.40.570.10 400 613 6.7E-41 T 19-04-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 SUPERFAMILY SSF50494 96 304 1.41E-32 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_3393 019da1828f8eabea4bcb10ad5337482e 640 Gene3D G3DSA:2.40.10.10 108 191 8.2E-11 T 19-04-2016 AMED_6012 c39ac5607625f9f18f6aa458255c8151 175 Pfam PF05154 TM2 domain 108 158 2.1E-12 T 19-04-2016 IPR007829 TM2 domain AMED_6012 c39ac5607625f9f18f6aa458255c8151 175 Pfam PF08044 Domain of unknown function (DUF1707) 6 58 2.2E-20 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_2106 ae89c688cf5776449da52cc35c977b82 397 PANTHER PTHR41312 5 396 2.4E-37 T 19-04-2016 AMED_2106 ae89c688cf5776449da52cc35c977b82 397 Pfam PF12698 ABC-2 family transporter protein 22 374 1.3E-45 T 19-04-2016 AMED_6499 0ad1d1f458da93711eecdb23615eb45d 311 Pfam PF01435 Peptidase family M48 113 190 2.8E-9 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMED_6499 0ad1d1f458da93711eecdb23615eb45d 311 Gene3D G3DSA:3.30.2010.10 111 182 9.0E-13 T 19-04-2016 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 SUPERFAMILY SSF117892 50 183 6.93E-37 T 19-04-2016 IPR001107 Band 7 domain AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PANTHER PTHR10264:SF60 1 237 1.0E-87 T 19-04-2016 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 152 170 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 196 219 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 128 151 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 26 48 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 171 192 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 73 94 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PRINTS PR00721 Stomatin signature 108 125 1.2E-59 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 PANTHER PTHR10264 1 237 1.0E-87 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 Pfam PF01145 SPFH domain / Band 7 family 23 192 2.7E-32 T 19-04-2016 IPR001107 Band 7 domain AMED_5575 92bcc1f5889ec25014e8975b6f7aed82 282 SMART SM00244 19 176 8.1E-54 T 19-04-2016 IPR001107 Band 7 domain AMED_7276 d5eef4a4134507898de629a7510447b9 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 4.9E-16 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_7276 d5eef4a4134507898de629a7510447b9 248 SUPERFAMILY SSF46785 14 85 1.41E-19 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7276 d5eef4a4134507898de629a7510447b9 248 Gene3D G3DSA:3.40.1410.10 136 244 2.0E-17 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_7276 d5eef4a4134507898de629a7510447b9 248 SUPERFAMILY SSF64288 69 244 2.83E-22 T 19-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AMED_7276 d5eef4a4134507898de629a7510447b9 248 SMART SM00866 104 241 4.8E-7 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_7276 d5eef4a4134507898de629a7510447b9 248 PANTHER PTHR11751 16 90 6.6E-16 T 19-04-2016 AMED_7276 d5eef4a4134507898de629a7510447b9 248 Pfam PF07702 UTRA domain 136 240 5.4E-14 T 19-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMED_7276 d5eef4a4134507898de629a7510447b9 248 Gene3D G3DSA:1.10.10.10 15 88 2.8E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7276 d5eef4a4134507898de629a7510447b9 248 SMART SM00345 22 81 5.1E-14 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_2397 dbc8b48c288413de9a4e538ee7d882fb 248 SUPERFAMILY SSF47240 12 193 2.92E-21 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_5709 4a30a85bb3e966d18c057bcb43e21e20 152 Gene3D G3DSA:3.30.530.20 4 142 1.6E-23 T 19-04-2016 IPR023393 START-like domain AMED_5709 4a30a85bb3e966d18c057bcb43e21e20 152 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 138 1.0E-20 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_5709 4a30a85bb3e966d18c057bcb43e21e20 152 SUPERFAMILY SSF55961 4 141 1.28E-26 T 19-04-2016 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 Pfam PF00067 Cytochrome P450 122 310 8.0E-22 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PANTHER PTHR11712 30 341 1.2E-89 T 19-04-2016 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 286 295 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 SUPERFAMILY SSF48264 15 341 8.77E-87 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 284 293 1.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 293 304 1.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 181 198 1.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00385 P450 superfamily signature 216 227 1.3E-7 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 80 96 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 235 262 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 33 44 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 293 304 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 135 157 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 97 112 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 216 227 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 284 293 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 PRINTS PR00359 B-class P450 signature 263 278 1.1E-59 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5630 50caa0658d0d22dfdfb002d10d131c8d 341 Gene3D G3DSA:1.10.630.10 2 341 1.5E-111 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 SMART SM00448 4 126 6.6E-11 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 227 536 1.8E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 Gene3D G3DSA:3.50.50.60 225 334 4.1E-31 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 Gene3D G3DSA:3.50.50.60 335 543 2.2E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 Gene3D G3DSA:3.40.50.2300 7 137 3.4E-22 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 500 522 8.2E-21 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 455 471 8.2E-21 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 248 8.2E-21 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 371 389 8.2E-21 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 328 346 8.2E-21 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 SUPERFAMILY SSF52172 7 134 1.24E-21 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1472 f4a75232494d359a8218c1502fa90b07 550 SUPERFAMILY SSF51905 223 547 2.32E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PANTHER PTHR22912:SF138 507 548 8.3E-152 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PANTHER PTHR22912:SF138 214 487 8.3E-152 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PANTHER PTHR22912 507 548 8.3E-152 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PANTHER PTHR22912 214 487 8.3E-152 T 19-04-2016 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 Pfam PF00072 Response regulator receiver domain 7 119 1.0E-12 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 457 478 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 367 391 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 421 437 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 228 250 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 261 276 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 329 337 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_1472 f4a75232494d359a8218c1502fa90b07 550 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 282 292 5.0E-35 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 205 7.7E-74 T 19-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 207 39.974 T 19-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 Pfam PF14681 Uracil phosphoribosyltransferase 5 206 3.2E-60 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 SUPERFAMILY SSF53271 3 205 6.29E-58 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 PANTHER PTHR10285:SF46 1 196 2.9E-70 T 19-04-2016 AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 PANTHER PTHR10285 1 196 2.9E-70 T 19-04-2016 AMED_0885 3f52e46dd2c2e0b1530cc267cdd9f358 207 Gene3D G3DSA:3.40.50.2020 2 205 4.1E-68 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_2120 41b1237d1b9ee46a7026b41a6c3f2623 720 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 464 635 7.2E-7 T 19-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AMED_2120 41b1237d1b9ee46a7026b41a6c3f2623 720 Gene3D G3DSA:3.40.50.300 505 653 2.0E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2120 41b1237d1b9ee46a7026b41a6c3f2623 720 Gene3D G3DSA:3.40.50.300 288 381 2.0E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2120 41b1237d1b9ee46a7026b41a6c3f2623 720 SUPERFAMILY SSF52540 273 672 4.79E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5831 cbdd9418b70ffcf34a4066b9b24d2e22 143 Pfam PF00011 Hsp20/alpha crystallin family 36 132 5.4E-19 T 19-04-2016 IPR002068 Alpha crystallin/Hsp20 domain AMED_5831 cbdd9418b70ffcf34a4066b9b24d2e22 143 PANTHER PTHR11527:SF118 25 140 3.4E-26 T 19-04-2016 AMED_5831 cbdd9418b70ffcf34a4066b9b24d2e22 143 PANTHER PTHR11527 25 140 3.4E-26 T 19-04-2016 IPR031107 Small heat shock protein HSP20 AMED_5831 cbdd9418b70ffcf34a4066b9b24d2e22 143 Gene3D G3DSA:2.60.40.790 6 132 7.2E-30 T 19-04-2016 IPR008978 HSP20-like chaperone AMED_5831 cbdd9418b70ffcf34a4066b9b24d2e22 143 SUPERFAMILY SSF49764 8 132 6.02E-31 T 19-04-2016 IPR008978 HSP20-like chaperone AMED_0383 07eb651fd574fe4abcb1a278d75df9b7 234 SUPERFAMILY SSF144091 29 221 1.7E-6 T 19-04-2016 AMED_0383 07eb651fd574fe4abcb1a278d75df9b7 234 Gene3D G3DSA:1.20.1540.10 31 217 3.8E-4 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_2856 21f1c38d75cf098302124935a37e3a81 211 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 36 143 2.0E-13 T 19-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 AMED_2856 21f1c38d75cf098302124935a37e3a81 211 SUPERFAMILY SSF55961 16 148 1.6E-30 T 19-04-2016 AMED_2856 21f1c38d75cf098302124935a37e3a81 211 Gene3D G3DSA:3.30.530.20 24 149 9.8E-32 T 19-04-2016 IPR023393 START-like domain AMED_7105 83625e0b7df5f41ba46db1726f107902 150 Gene3D G3DSA:1.10.10.10 14 142 4.8E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7105 83625e0b7df5f41ba46db1726f107902 150 SUPERFAMILY SSF46785 20 138 7.85E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7105 83625e0b7df5f41ba46db1726f107902 150 Pfam PF01638 HxlR-like helix-turn-helix 74 128 1.4E-5 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_6625 b39ea8d4f344d6f6bb9c730a4b38fc15 355 Gene3D G3DSA:3.40.50.300 131 336 1.5E-101 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6625 b39ea8d4f344d6f6bb9c730a4b38fc15 355 SUPERFAMILY SSF52540 132 299 5.16E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6625 b39ea8d4f344d6f6bb9c730a4b38fc15 355 PANTHER PTHR30473:SF1 37 348 2.4E-162 T 19-04-2016 AMED_6625 b39ea8d4f344d6f6bb9c730a4b38fc15 355 Pfam PF02562 PhoH-like protein 133 336 2.0E-95 T 19-04-2016 IPR003714 PhoH-like protein GO:0005524 AMED_6625 b39ea8d4f344d6f6bb9c730a4b38fc15 355 PANTHER PTHR30473 37 348 2.4E-162 T 19-04-2016 AMED_7815 d2abb0b0651f7493c01c9a54be896bdb 306 Pfam PF00294 pfkB family carbohydrate kinase 16 282 1.2E-29 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_7815 d2abb0b0651f7493c01c9a54be896bdb 306 PIRSF PIRSF000535 6 299 1.3E-37 T 19-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AMED_7815 d2abb0b0651f7493c01c9a54be896bdb 306 PANTHER PTHR10584 16 279 1.0E-21 T 19-04-2016 AMED_7815 d2abb0b0651f7493c01c9a54be896bdb 306 Gene3D G3DSA:3.40.1190.20 23 297 5.2E-46 T 19-04-2016 IPR029056 Ribokinase-like AMED_7815 d2abb0b0651f7493c01c9a54be896bdb 306 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 237 250 - T 19-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMED_7815 d2abb0b0651f7493c01c9a54be896bdb 306 SUPERFAMILY SSF53613 14 279 1.53E-39 T 19-04-2016 IPR029056 Ribokinase-like AMED_7374 b63d2894ec70c9dbf37f196a349a10c8 281 PANTHER PTHR40761:SF1 1 273 2.3E-19 T 19-04-2016 AMED_7374 b63d2894ec70c9dbf37f196a349a10c8 281 PANTHER PTHR40761 1 273 2.3E-19 T 19-04-2016 AMED_7303 697c5b97d2032e578ae999a131d89ea2 296 Pfam PF12642 Conjugative transposon protein TcpC 67 285 5.8E-14 T 19-04-2016 IPR024735 Conjugative transposon protein TcpC AMED_8823 432c01a32579bd4a32b635b24d479b48 163 PANTHER PTHR41553 6 153 2.7E-24 T 19-04-2016 AMED_8823 432c01a32579bd4a32b635b24d479b48 163 PANTHER PTHR41553:SF1 6 153 2.7E-24 T 19-04-2016 AMED_8823 432c01a32579bd4a32b635b24d479b48 163 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 35 150 8.7E-32 T 19-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AMED_2378 e777982aacd625002a5b9d73fd59543c 227 PANTHER PTHR30055:SF93 3 225 1.5E-39 T 19-04-2016 AMED_2378 e777982aacd625002a5b9d73fd59543c 227 SUPERFAMILY SSF48498 83 223 1.56E-22 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_2378 e777982aacd625002a5b9d73fd59543c 227 Gene3D G3DSA:1.10.10.60 6 71 5.1E-22 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2378 e777982aacd625002a5b9d73fd59543c 227 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 81 222 3.6E-22 T 19-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMED_2378 e777982aacd625002a5b9d73fd59543c 227 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 1.5E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2378 e777982aacd625002a5b9d73fd59543c 227 SUPERFAMILY SSF46689 12 78 1.44E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2378 e777982aacd625002a5b9d73fd59543c 227 Gene3D G3DSA:1.10.357.10 72 222 6.7E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2378 e777982aacd625002a5b9d73fd59543c 227 PANTHER PTHR30055 3 225 1.5E-39 T 19-04-2016 AMED_4664 50e1c1a768dec5f2b32cd1e8dc6e3b29 265 TIGRFAM TIGR03843 TIGR03843: conserved hypothetical protein 15 265 3.6E-109 T 19-04-2016 IPR022292 Conserved hypothetical protein CHP03843 AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 Gene3D G3DSA:3.20.20.140 55 124 1.0E-14 T 19-04-2016 AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 Pfam PF01979 Amidohydrolase family 45 111 1.9E-8 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 SUPERFAMILY SSF51556 49 124 6.11E-19 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 PANTHER PTHR11271 4 120 4.2E-13 T 19-04-2016 AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 SUPERFAMILY SSF51338 3 60 1.64E-12 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 PANTHER PTHR11271:SF33 4 120 4.2E-13 T 19-04-2016 AMED_6437 9905b076ea7dbf01efaf40f25562fb24 126 Gene3D G3DSA:2.30.40.10 3 54 4.0E-17 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_2246 8662270518e0d07b184849c7886d1785 346 Pfam PF11203 Putative type VII ESX secretion system translocon, EccE 180 271 2.0E-16 T 19-04-2016 IPR021368 Type VII secretion system protein EccE AMED_1698 a12f15c656dc418e520c16f0b7e378b3 256 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 59 253 1.7E-63 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1698 a12f15c656dc418e520c16f0b7e378b3 256 PANTHER PTHR11820 44 254 4.8E-100 T 19-04-2016 AMED_1698 a12f15c656dc418e520c16f0b7e378b3 256 SUPERFAMILY SSF56529 50 254 1.22E-74 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1698 a12f15c656dc418e520c16f0b7e378b3 256 Gene3D G3DSA:3.90.850.10 50 254 3.4E-86 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_1698 a12f15c656dc418e520c16f0b7e378b3 256 Pfam PF10370 Domain of unknown function (DUF2437) 2 54 1.1E-16 T 19-04-2016 IPR018833 Domain of unknown function DUF2437 AMED_3571 a26b097e1e95112fb7b6ebfe7b14ab85 436 Pfam PF12770 CHAT domain 195 340 6.0E-6 T 19-04-2016 IPR024983 CHAT domain AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 PANTHER PTHR13794 11 380 1.4E-75 T 19-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 Pfam PF13378 Enolase C-terminal domain-like 169 376 4.6E-51 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 46 142 8.0E-16 T 19-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 SUPERFAMILY SSF51604 141 383 2.36E-58 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 SUPERFAMILY SSF54826 11 142 9.48E-24 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 Gene3D G3DSA:3.30.390.10 12 140 6.6E-35 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 Gene3D G3DSA:3.20.20.120 141 372 7.2E-61 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 PANTHER PTHR13794:SF55 11 380 1.4E-75 T 19-04-2016 AMED_5071 53bf494dd13f84646e5be5bfc666449a 386 SMART SM00922 160 256 9.7E-20 T 19-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMED_5199 3ba783c9758dace90c49ed0681c2baf2 588 SUPERFAMILY SSF52016 376 572 3.06E-44 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMED_5199 3ba783c9758dace90c49ed0681c2baf2 588 PANTHER PTHR21000:SF1 3 585 0.0 T 19-04-2016 AMED_5199 3ba783c9758dace90c49ed0681c2baf2 588 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 19-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_5199 3ba783c9758dace90c49ed0681c2baf2 588 PANTHER PTHR21000 3 585 0.0 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_5199 3ba783c9758dace90c49ed0681c2baf2 588 SUPERFAMILY SSF143975 4 373 6.02E-121 T 19-04-2016 AMED_5199 3ba783c9758dace90c49ed0681c2baf2 588 Pfam PF00920 Dehydratase family 39 561 7.7E-155 T 19-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMED_0207 3bed236f0be5cddfcdf51c15e0611761 318 Gene3D G3DSA:3.30.360.10 129 317 6.1E-18 T 19-04-2016 AMED_0207 3bed236f0be5cddfcdf51c15e0611761 318 PANTHER PTHR22604 4 221 2.8E-42 T 19-04-2016 AMED_0207 3bed236f0be5cddfcdf51c15e0611761 318 SUPERFAMILY SSF51735 4 172 2.96E-31 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0207 3bed236f0be5cddfcdf51c15e0611761 318 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 115 6.7E-19 T 19-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMED_0207 3bed236f0be5cddfcdf51c15e0611761 318 Gene3D G3DSA:3.40.50.720 4 128 5.3E-30 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2393 614ea243d60dafe6206daab1616cddc4 164 Pfam PF03477 ATP cone domain 47 132 6.7E-13 T 19-04-2016 IPR005144 ATP-cone domain AMED_2393 614ea243d60dafe6206daab1616cddc4 164 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 150 76.93 T 19-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMED_2393 614ea243d60dafe6206daab1616cddc4 164 PANTHER PTHR30455 2 153 5.2E-63 T 19-04-2016 AMED_2393 614ea243d60dafe6206daab1616cddc4 164 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 144 4.3E-48 T 19-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMED_2393 614ea243d60dafe6206daab1616cddc4 164 PANTHER PTHR30455:SF2 2 153 5.2E-63 T 19-04-2016 AMED_5760 af594926a28370ad7565e2cc0b79deb3 325 SUPERFAMILY SSF51430 8 307 7.73E-101 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5760 af594926a28370ad7565e2cc0b79deb3 325 Pfam PF00248 Aldo/keto reductase family 13 307 9.8E-82 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5760 af594926a28370ad7565e2cc0b79deb3 325 PANTHER PTHR11732:SF225 1 320 9.2E-135 T 19-04-2016 AMED_5760 af594926a28370ad7565e2cc0b79deb3 325 PANTHER PTHR11732 1 320 9.2E-135 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_5760 af594926a28370ad7565e2cc0b79deb3 325 Gene3D G3DSA:3.20.20.100 4 309 1.8E-111 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_1280 a7b864dac1dab2f4dce062ad64cc05f3 217 SUPERFAMILY SSF48498 116 204 9.3E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1280 a7b864dac1dab2f4dce062ad64cc05f3 217 PANTHER PTHR30055 28 214 1.1E-19 T 19-04-2016 AMED_1280 a7b864dac1dab2f4dce062ad64cc05f3 217 SUPERFAMILY SSF46689 40 94 3.59E-7 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1280 a7b864dac1dab2f4dce062ad64cc05f3 217 PANTHER PTHR30055:SF2 28 214 1.1E-19 T 19-04-2016 AMED_1280 a7b864dac1dab2f4dce062ad64cc05f3 217 Gene3D G3DSA:1.10.357.10 40 208 3.4E-26 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 82 95 - T 19-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 62 283 8.1E-54 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 PANTHER PTHR18966:SF191 56 282 3.8E-32 T 19-04-2016 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 SUPERFAMILY SSF53850 50 284 2.25E-54 T 19-04-2016 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 PANTHER PTHR18966 56 282 3.8E-32 T 19-04-2016 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 SMART SM00062 60 286 1.7E-44 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 Gene3D G3DSA:3.40.190.10 55 161 4.1E-37 T 19-04-2016 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 Gene3D G3DSA:3.40.190.10 9 16 4.1E-37 T 19-04-2016 AMED_9209 77d771c84b1dbfa1741141fc3572e9ae 299 Gene3D G3DSA:3.40.190.10 162 243 1.6E-19 T 19-04-2016 AMED_1357 257fe8631e6f0d8034b70c7dbeea42e6 280 Pfam PF12730 ABC-2 family transporter protein 2 139 1.1E-14 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_1357 257fe8631e6f0d8034b70c7dbeea42e6 280 PANTHER PTHR37305 67 279 1.9E-14 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 PANTHER PTHR30570:SF1 59 179 1.2E-13 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 PANTHER PTHR30570 1 32 1.2E-13 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 Pfam PF12849 PBP superfamily domain 8 221 2.5E-16 T 19-04-2016 IPR024370 PBP domain AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 SUPERFAMILY SSF53850 62 220 6.51E-23 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 SUPERFAMILY SSF53850 11 30 6.51E-23 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 PANTHER PTHR30570:SF1 1 32 1.2E-13 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 Gene3D G3DSA:3.40.190.10 12 174 7.1E-16 T 19-04-2016 AMED_7359 f38394e6909b2eb853f6a7a4c1db58e2 329 PANTHER PTHR30570 59 179 1.2E-13 T 19-04-2016 AMED_8569 982de3b91ac5e8e97fce8eb9ecf53321 721 SUPERFAMILY SSF48208 299 708 1.7E-73 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_8569 982de3b91ac5e8e97fce8eb9ecf53321 721 SUPERFAMILY SSF74650 26 289 2.04E-66 T 19-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AMED_8569 982de3b91ac5e8e97fce8eb9ecf53321 721 Gene3D G3DSA:1.50.10.10 302 717 1.4E-124 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_8569 982de3b91ac5e8e97fce8eb9ecf53321 721 Pfam PF09137 Glucodextranase, domain N 28 286 1.7E-84 T 19-04-2016 IPR015220 Glucodextranase N KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMED_8569 982de3b91ac5e8e97fce8eb9ecf53321 721 Pfam PF00723 Glycosyl hydrolases family 15 300 700 2.1E-18 T 19-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 AMED_8569 982de3b91ac5e8e97fce8eb9ecf53321 721 Gene3D G3DSA:2.70.98.10 23 286 8.9E-83 T 19-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 AMED_4057 242ec1f0588b181abd28acf5e02d71fe 205 SUPERFAMILY SSF51735 3 200 2.68E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4057 242ec1f0588b181abd28acf5e02d71fe 205 Pfam PF13460 NAD(P)H-binding 11 193 4.0E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4057 242ec1f0588b181abd28acf5e02d71fe 205 PANTHER PTHR15020 2 198 5.1E-18 T 19-04-2016 AMED_4057 242ec1f0588b181abd28acf5e02d71fe 205 Gene3D G3DSA:3.40.50.720 4 198 6.3E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7398 07abddfa1485147292ef4ac5d83c3d02 488 PANTHER PTHR30250 14 397 1.8E-35 T 19-04-2016 AMED_7398 07abddfa1485147292ef4ac5d83c3d02 488 Pfam PF13440 Polysaccharide biosynthesis protein 47 334 4.7E-40 T 19-04-2016 AMED_7398 07abddfa1485147292ef4ac5d83c3d02 488 PANTHER PTHR30250:SF0 14 397 1.8E-35 T 19-04-2016 AMED_1026 47bbecf5ee377ebba22f13346761faff 106 Pfam PF00037 4Fe-4S binding domain 34 56 1.2E-8 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMED_1026 47bbecf5ee377ebba22f13346761faff 106 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMED_1026 47bbecf5ee377ebba22f13346761faff 106 PRINTS PR00354 7Fe ferredoxin signature 35 52 2.0E-16 T 19-04-2016 IPR000813 7Fe ferredoxin GO:0009055 AMED_1026 47bbecf5ee377ebba22f13346761faff 106 PRINTS PR00354 7Fe ferredoxin signature 9 19 2.0E-16 T 19-04-2016 IPR000813 7Fe ferredoxin GO:0009055 AMED_1026 47bbecf5ee377ebba22f13346761faff 106 PRINTS PR00354 7Fe ferredoxin signature 19 29 2.0E-16 T 19-04-2016 IPR000813 7Fe ferredoxin GO:0009055 AMED_1026 47bbecf5ee377ebba22f13346761faff 106 Gene3D G3DSA:3.30.70.20 3 72 2.1E-18 T 19-04-2016 AMED_1026 47bbecf5ee377ebba22f13346761faff 106 SUPERFAMILY SSF54862 3 85 3.98E-21 T 19-04-2016 AMED_1026 47bbecf5ee377ebba22f13346761faff 106 PANTHER PTHR11938 1 89 1.1E-31 T 19-04-2016 AMED_2360 e53e67e2b90cf05db3133c6d13aefddf 286 Gene3D G3DSA:1.10.3720.10 60 265 1.3E-45 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2360 e53e67e2b90cf05db3133c6d13aefddf 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 265 2.3E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2360 e53e67e2b90cf05db3133c6d13aefddf 286 PANTHER PTHR30614 7 270 1.5E-69 T 19-04-2016 AMED_2360 e53e67e2b90cf05db3133c6d13aefddf 286 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 62 156 2.5E-22 T 19-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AMED_2360 e53e67e2b90cf05db3133c6d13aefddf 286 SUPERFAMILY SSF161098 62 266 1.01E-40 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7917 7aa18f47a901bb3afe6654739dacf2d5 171 Pfam PF02575 YbaB/EbfC DNA-binding family 14 97 8.3E-13 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_7917 7aa18f47a901bb3afe6654739dacf2d5 171 Gene3D G3DSA:3.30.1310.10 13 97 1.6E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_7917 7aa18f47a901bb3afe6654739dacf2d5 171 SUPERFAMILY SSF82607 14 97 2.75E-9 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1863 4be52fb8f15e4d54468080088b7ef947 133 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 116 9.0E-23 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_1863 4be52fb8f15e4d54468080088b7ef947 133 PANTHER PTHR33570:SF2 3 127 4.4E-50 T 19-04-2016 AMED_1863 4be52fb8f15e4d54468080088b7ef947 133 SUPERFAMILY SSF69118 3 120 7.98E-36 T 19-04-2016 IPR029032 AhpD-like AMED_1863 4be52fb8f15e4d54468080088b7ef947 133 PANTHER PTHR33570 3 127 4.4E-50 T 19-04-2016 AMED_1863 4be52fb8f15e4d54468080088b7ef947 133 Gene3D G3DSA:1.20.1290.10 3 127 2.6E-28 T 19-04-2016 IPR029032 AhpD-like AMED_1863 4be52fb8f15e4d54468080088b7ef947 133 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 3 122 1.0E-51 T 19-04-2016 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44|UniPathway: UPA00157 AMED_4006 7804ad2914ee661ec2c3db8033014428 386 PANTHER PTHR33744 44 386 3.3E-21 T 19-04-2016 AMED_4006 7804ad2914ee661ec2c3db8033014428 386 Pfam PF13556 PucR C-terminal helix-turn-helix domain 321 378 1.9E-16 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 193 211 3.4E-6 T 19-04-2016 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 128 152 3.4E-6 T 19-04-2016 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 PRINTS PR01036 Tetracycline resistance protein TetB signature 65 87 3.4E-6 T 19-04-2016 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 Pfam PF07690 Major Facilitator Superfamily 6 422 2.9E-44 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 Gene3D G3DSA:1.20.1250.20 3 187 2.1E-23 T 19-04-2016 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 Gene3D G3DSA:1.20.1250.20 266 462 7.0E-18 T 19-04-2016 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 ProSitePatterns PS00216 Sugar transport proteins signature 1. 56 72 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 SUPERFAMILY SSF103473 2 208 3.01E-29 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 SUPERFAMILY SSF103473 201 462 1.44E-25 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 PANTHER PTHR23501 237 463 5.5E-79 T 19-04-2016 AMED_3901 b82dd5dbcca1eb9a0be466286ad9a52e 466 PANTHER PTHR23501 1 218 5.5E-79 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PANTHER PTHR13789:SF90 6 381 3.5E-76 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.50.50.60 298 374 1.3E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.50.50.60 6 71 1.3E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 Gene3D G3DSA:3.50.50.60 111 193 1.3E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.2E-41 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 343 361 1.2E-41 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 361 377 1.2E-41 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 167 182 1.2E-41 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 325 1.2E-41 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 325 341 1.2E-41 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 PANTHER PTHR13789 6 381 3.5E-76 T 19-04-2016 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 Pfam PF01494 FAD binding domain 6 371 8.4E-89 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 SUPERFAMILY SSF51905 6 188 2.29E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5442 65e5daa2fd645deceb81b703b20a51a7 521 SUPERFAMILY SSF51905 297 379 2.29E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1325 3ca76bf923d9cad71114b8ddd678f799 751 SUPERFAMILY SSF48576 401 707 8.06E-58 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_1325 3ca76bf923d9cad71114b8ddd678f799 751 SUPERFAMILY SSF48576 15 351 1.73E-67 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_1325 3ca76bf923d9cad71114b8ddd678f799 751 Gene3D G3DSA:1.10.600.10 17 340 3.1E-103 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_1325 3ca76bf923d9cad71114b8ddd678f799 751 Gene3D G3DSA:1.10.600.10 397 709 1.2E-91 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 PANTHER PTHR10907:SF47 2 250 5.1E-22 T 19-04-2016 AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 13 244 1.1E-39 T 19-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 Gene3D G3DSA:2.120.10.30 5 268 3.3E-40 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 SUPERFAMILY SSF63829 6 247 2.18E-39 T 19-04-2016 AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 PANTHER PTHR10907 2 250 5.1E-22 T 19-04-2016 AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 130 152 4.6E-5 T 19-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) AMED_1545 595d7436e5f35305d6c6eee29fba6af1 274 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 190 207 4.6E-5 T 19-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) AMED_8619 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 SMART SM00347 29 128 7.3E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_8619 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 SUPERFAMILY SSF46785 10 142 6.17E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8619 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 PANTHER PTHR33164 28 148 2.6E-15 T 19-04-2016 AMED_8619 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 Gene3D G3DSA:1.10.10.10 11 140 2.3E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8619 4ce5e2c07e25ba0d3a196ae5dcb035a6 148 Pfam PF12802 MarR family 35 92 3.3E-15 T 19-04-2016 AMED_1516 74e909992c8c67b29e5e0f90881f6cd2 324 Pfam PF13407 Periplasmic binding protein domain 36 297 1.1E-24 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1516 74e909992c8c67b29e5e0f90881f6cd2 324 PIRSF PIRSF002816 4 323 2.0E-58 T 19-04-2016 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 AMED_1516 74e909992c8c67b29e5e0f90881f6cd2 324 PANTHER PTHR30036 28 250 1.7E-14 T 19-04-2016 AMED_1516 74e909992c8c67b29e5e0f90881f6cd2 324 SUPERFAMILY SSF53822 28 318 1.18E-40 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_1516 74e909992c8c67b29e5e0f90881f6cd2 324 Gene3D G3DSA:3.40.50.2300 145 298 4.1E-27 T 19-04-2016 AMED_1516 74e909992c8c67b29e5e0f90881f6cd2 324 Gene3D G3DSA:3.40.50.2300 28 144 1.3E-23 T 19-04-2016 AMED_5106 79d008940e3dea13031157630c4b20a9 477 Pfam PF04055 Radical SAM superfamily 82 251 5.1E-16 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_5106 79d008940e3dea13031157630c4b20a9 477 PANTHER PTHR13932 16 473 3.4E-42 T 19-04-2016 AMED_5106 79d008940e3dea13031157630c4b20a9 477 SMART SM00729 75 300 4.6E-24 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMED_5106 79d008940e3dea13031157630c4b20a9 477 SUPERFAMILY SSF102114 69 473 3.92E-63 T 19-04-2016 AMED_5106 79d008940e3dea13031157630c4b20a9 477 Gene3D G3DSA:3.80.30.20 84 268 1.9E-24 T 19-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe AMED_2079 96e3d94baa8f0ce779317af2f37d07d0 686 SUPERFAMILY SSF55729 460 649 5.83E-5 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2079 96e3d94baa8f0ce779317af2f37d07d0 686 PANTHER PTHR34697 208 666 1.3E-48 T 19-04-2016 AMED_2079 96e3d94baa8f0ce779317af2f37d07d0 686 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 351 650 3.2E-87 T 19-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 Pfam PF01979 Amidohydrolase family 46 373 3.4E-26 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 PANTHER PTHR11113:SF7 1 375 5.3E-134 T 19-04-2016 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 7 362 3.8E-81 T 19-04-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 SUPERFAMILY SSF51338 344 381 5.67E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 SUPERFAMILY SSF51338 1 50 5.67E-15 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 SUPERFAMILY SSF51556 50 344 2.42E-92 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 Gene3D G3DSA:2.30.40.10 1 54 7.1E-12 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 PIRSF PIRSF038994 2 376 3.9E-112 T 19-04-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 Gene3D G3DSA:3.20.20.140 55 343 2.0E-104 T 19-04-2016 AMED_9120 fee2e6049c0c92ad4fac727fd3a81883 383 PANTHER PTHR11113 1 375 5.3E-134 T 19-04-2016 AMED_3543 ab5738379a8cabdb7e458c258ccd8519 359 Pfam PF01471 Putative peptidoglycan binding domain 120 169 3.3E-8 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3543 ab5738379a8cabdb7e458c258ccd8519 359 SUPERFAMILY SSF47090 118 176 8.63E-9 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3543 ab5738379a8cabdb7e458c258ccd8519 359 Gene3D G3DSA:1.10.101.10 121 169 1.0E-7 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_5746 b6b2a675a3e901cb87dd1083431cf7f6 394 SUPERFAMILY SSF64307 20 60 3.27E-6 T 19-04-2016 IPR001455 TusA-like domain AMED_5746 b6b2a675a3e901cb87dd1083431cf7f6 394 SUPERFAMILY SSF47240 160 327 4.37E-30 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_5746 b6b2a675a3e901cb87dd1083431cf7f6 394 Gene3D G3DSA:3.30.110.40 20 62 8.5E-6 T 19-04-2016 IPR001455 TusA-like domain AMED_5474 16699adb07bee06a07ad89647420a085 464 PANTHER PTHR30365 1 463 1.5E-214 T 19-04-2016 AMED_5474 16699adb07bee06a07ad89647420a085 464 PIRSF PIRSF006446 1 461 2.2E-156 T 19-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 AMED_5474 16699adb07bee06a07ad89647420a085 464 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 444 1.9E-179 T 19-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 AMED_5474 16699adb07bee06a07ad89647420a085 464 PANTHER PTHR30365:SF0 1 463 1.5E-214 T 19-04-2016 AMED_6264 03698203895a3a9c7e19b1dfd31fd55a 185 SUPERFAMILY SSF140459 11 131 1.05E-9 T 19-04-2016 AMED_6264 03698203895a3a9c7e19b1dfd31fd55a 185 Pfam PF00823 PPE family 17 134 1.2E-8 T 19-04-2016 IPR000030 PPE family AMED_2317 39952362934af7e2df036cca38b9def0 69 Gene3D G3DSA:2.40.50.140 1 54 1.2E-5 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_6194 534db2b4fd20c820a2b0d0eba1884c43 291 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 102 278 2.8E-16 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_6194 534db2b4fd20c820a2b0d0eba1884c43 291 Gene3D G3DSA:3.90.850.10 71 278 1.4E-26 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_6194 534db2b4fd20c820a2b0d0eba1884c43 291 PANTHER PTHR11820:SF82 59 290 9.1E-65 T 19-04-2016 AMED_6194 534db2b4fd20c820a2b0d0eba1884c43 291 PANTHER PTHR11820 59 290 9.1E-65 T 19-04-2016 AMED_6194 534db2b4fd20c820a2b0d0eba1884c43 291 SUPERFAMILY SSF56529 56 278 9.81E-29 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_6677 732eb8bd59349f7b42a72250593c347e 121 SUPERFAMILY SSF54197 4 101 6.97E-16 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_6677 732eb8bd59349f7b42a72250593c347e 121 Gene3D G3DSA:3.30.428.10 4 107 2.3E-17 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMED_6677 732eb8bd59349f7b42a72250593c347e 121 Pfam PF01230 HIT domain 5 85 7.2E-5 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMED_3782 e9ca875e534d5cc4c3b7ef72d40027bb 174 Pfam PF01106 NifU-like domain 89 149 3.3E-8 T 19-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMED_3782 e9ca875e534d5cc4c3b7ef72d40027bb 174 SUPERFAMILY SSF117916 80 153 1.42E-8 T 19-04-2016 AMED_0918 7a48d432d7829d69f78aced8723c671d 277 SUPERFAMILY SSF52980 169 260 1.82E-6 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_0918 7a48d432d7829d69f78aced8723c671d 277 PANTHER PTHR37044 13 276 3.0E-32 T 19-04-2016 AMED_0092 de4c92368eafd9b63459d6527799e6c8 342 Pfam PF05425 Copper resistance protein D 231 334 1.0E-21 T 19-04-2016 IPR008457 Copper resistance protein D GO:0016021 AMED_2666 bad0a8c1b9564b72f98f5b61553c8a6a 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 120 2.4E-13 T 19-04-2016 AMED_2666 bad0a8c1b9564b72f98f5b61553c8a6a 145 SUPERFAMILY SSF54593 3 143 1.51E-35 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2666 bad0a8c1b9564b72f98f5b61553c8a6a 145 Gene3D G3DSA:3.10.180.10 4 144 1.5E-50 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8318 3e39ce5527beefaf090336837534e47f 356 PANTHER PTHR10366 5 352 1.5E-118 T 19-04-2016 AMED_8318 3e39ce5527beefaf090336837534e47f 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 140 1.9E-21 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_8318 3e39ce5527beefaf090336837534e47f 356 Pfam PF01370 NAD dependent epimerase/dehydratase family 173 275 2.8E-21 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_8318 3e39ce5527beefaf090336837534e47f 356 PANTHER PTHR10366:SF367 5 352 1.5E-118 T 19-04-2016 AMED_8318 3e39ce5527beefaf090336837534e47f 356 Gene3D G3DSA:3.40.50.720 5 137 2.9E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8318 3e39ce5527beefaf090336837534e47f 356 Gene3D G3DSA:3.40.50.720 170 345 2.9E-68 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8318 3e39ce5527beefaf090336837534e47f 356 SUPERFAMILY SSF51735 165 348 1.62E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8318 3e39ce5527beefaf090336837534e47f 356 SUPERFAMILY SSF51735 3 128 1.62E-77 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8642 8f453d21e2472ef11629e2d9c4b32c64 563 Pfam PF02652 L-lactate permease 15 551 3.0E-137 T 19-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMED_8642 8f453d21e2472ef11629e2d9c4b32c64 563 PANTHER PTHR30003:SF0 1 562 1.0E-200 T 19-04-2016 AMED_8642 8f453d21e2472ef11629e2d9c4b32c64 563 PANTHER PTHR30003 1 562 1.0E-200 T 19-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMED_8642 8f453d21e2472ef11629e2d9c4b32c64 563 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 553 1.6E-136 T 19-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMED_4654 d1d738f98ba6d2f4f1c2efc249a06cd7 278 SUPERFAMILY SSF63992 4 270 1.7E-84 T 19-04-2016 IPR007035 Peptidase M55, D-aminopeptidase AMED_4654 d1d738f98ba6d2f4f1c2efc249a06cd7 278 Gene3D G3DSA:3.30.1360.130 217 271 1.2E-14 T 19-04-2016 AMED_4654 d1d738f98ba6d2f4f1c2efc249a06cd7 278 Pfam PF04951 D-aminopeptidase 4 263 7.6E-92 T 19-04-2016 IPR007035 Peptidase M55, D-aminopeptidase AMED_4654 d1d738f98ba6d2f4f1c2efc249a06cd7 278 PIRSF PIRSF015853 4 275 7.8E-91 T 19-04-2016 IPR007035 Peptidase M55, D-aminopeptidase AMED_4654 d1d738f98ba6d2f4f1c2efc249a06cd7 278 Gene3D G3DSA:3.40.50.10780 4 211 2.0E-74 T 19-04-2016 IPR027476 D-aminopeptidase, N-terminal AMED_2423 9679d0bccb285f0135934124ef35c4af 63 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 5 58 2.3E-11 T 19-04-2016 AMED_2423 9679d0bccb285f0135934124ef35c4af 63 PANTHER PTHR36923 1 62 4.7E-14 T 19-04-2016 AMED_2423 9679d0bccb285f0135934124ef35c4af 63 SUPERFAMILY SSF54862 2 61 6.91E-9 T 19-04-2016 AMED_2423 9679d0bccb285f0135934124ef35c4af 63 Gene3D G3DSA:3.30.70.20 1 61 1.1E-12 T 19-04-2016 AMED_9089 07722be279dedd5aa8a16b6c2176a635 510 PANTHER PTHR11785 1 490 5.4E-160 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_9089 07722be279dedd5aa8a16b6c2176a635 510 ProSitePatterns PS00218 Amino acid permeases signature. 60 91 - T 19-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMED_9089 07722be279dedd5aa8a16b6c2176a635 510 Pfam PF13520 Amino acid permease 33 471 2.0E-70 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_9089 07722be279dedd5aa8a16b6c2176a635 510 PIRSF PIRSF006060 4 505 1.6E-72 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_9089 07722be279dedd5aa8a16b6c2176a635 510 PANTHER PTHR11785:SF367 1 490 5.4E-160 T 19-04-2016 AMED_5183 dd16ea6031714194815654fe08c20ac3 266 Pfam PF03756 A-factor biosynthesis hotdog domain 109 241 1.7E-17 T 19-04-2016 IPR005509 A-factor biosynthesis hotdog domain AMED_7836 a321450e50021dfc3f8aea6ca50f1c2d 150 SUPERFAMILY SSF55874 44 132 7.03E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7836 a321450e50021dfc3f8aea6ca50f1c2d 150 Gene3D G3DSA:3.30.565.10 46 130 5.0E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_7836 a321450e50021dfc3f8aea6ca50f1c2d 150 Pfam PF13581 Histidine kinase-like ATPase domain 27 115 1.1E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4230 73d411cf3322d21c34d43f1fe098dc57 237 Pfam PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA 65 236 7.8E-80 T 19-04-2016 IPR018655 Protein of unknown function DUF2086 AMED_6583 8f1254256fa48179a5c8daa14e6a41f3 259 Pfam PF12730 ABC-2 family transporter protein 6 196 2.7E-19 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_9176 c0a33451c4bb1784b56bb7315086b8b9 238 Pfam PF00188 Cysteine-rich secretory protein family 125 236 5.2E-23 T 19-04-2016 IPR014044 CAP domain AMED_9176 c0a33451c4bb1784b56bb7315086b8b9 238 Gene3D G3DSA:3.40.33.10 117 236 2.9E-12 T 19-04-2016 IPR014044 CAP domain AMED_9176 c0a33451c4bb1784b56bb7315086b8b9 238 PANTHER PTHR31157 111 237 3.3E-42 T 19-04-2016 AMED_9176 c0a33451c4bb1784b56bb7315086b8b9 238 SUPERFAMILY SSF55797 117 237 3.66E-22 T 19-04-2016 IPR014044 CAP domain AMED_8096 a8b39bac9776262e0b18e55ae18641df 179 Gene3D G3DSA:3.30.1310.10 20 103 1.1E-4 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8096 a8b39bac9776262e0b18e55ae18641df 179 Pfam PF02575 YbaB/EbfC DNA-binding family 20 103 5.7E-7 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8096 a8b39bac9776262e0b18e55ae18641df 179 SUPERFAMILY SSF82607 25 103 3.53E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_5784 bae49db102bfbc815acc74dbd52fdf85 897 SUPERFAMILY SSF52540 207 474 1.06E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5784 bae49db102bfbc815acc74dbd52fdf85 897 SUPERFAMILY SSF48452 649 838 4.48E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_5784 bae49db102bfbc815acc74dbd52fdf85 897 PRINTS PR00364 Disease resistance protein signature 299 313 1.1E-6 T 19-04-2016 AMED_5784 bae49db102bfbc815acc74dbd52fdf85 897 PRINTS PR00364 Disease resistance protein signature 232 247 1.1E-6 T 19-04-2016 AMED_5784 bae49db102bfbc815acc74dbd52fdf85 897 PRINTS PR00364 Disease resistance protein signature 411 425 1.1E-6 T 19-04-2016 AMED_5784 bae49db102bfbc815acc74dbd52fdf85 897 Gene3D G3DSA:3.40.50.300 214 335 7.1E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606 713 1146 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606 19 165 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606 236 599 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606 1171 1422 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 SUPERFAMILY SSF51735 1132 1272 4.99E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6827 647bd6d483e3c9417727818bba379958 1668 SUPERFAMILY SSF51735 992 1094 4.99E-22 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6827 647bd6d483e3c9417727818bba379958 1668 Gene3D G3DSA:3.40.50.720 1437 1461 1.4E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6827 647bd6d483e3c9417727818bba379958 1668 Gene3D G3DSA:3.40.50.720 989 1100 1.4E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6827 647bd6d483e3c9417727818bba379958 1668 Gene3D G3DSA:3.40.50.720 1147 1235 1.4E-32 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6827 647bd6d483e3c9417727818bba379958 1668 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 91 1664 0.0 T 19-04-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMED_6827 647bd6d483e3c9417727818bba379958 1668 SUPERFAMILY SSF53223 806 1003 3.93E-23 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PIRSF PIRSF036761 28 1668 0.0 T 19-04-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606:SF1 713 1146 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606:SF1 19 165 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606:SF1 236 599 0.0 T 19-04-2016 AMED_6827 647bd6d483e3c9417727818bba379958 1668 PANTHER PTHR11606:SF1 1171 1422 0.0 T 19-04-2016 AMED_0563 abc7e2cd26326fe84605c3560858b1a6 314 Pfam PF00535 Glycosyl transferase family 2 11 134 9.1E-28 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_0563 abc7e2cd26326fe84605c3560858b1a6 314 PANTHER PTHR22916:SF12 1 280 7.9E-148 T 19-04-2016 AMED_0563 abc7e2cd26326fe84605c3560858b1a6 314 PANTHER PTHR22916 1 280 7.9E-148 T 19-04-2016 AMED_0563 abc7e2cd26326fe84605c3560858b1a6 314 Gene3D G3DSA:3.90.550.10 5 217 3.1E-44 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0563 abc7e2cd26326fe84605c3560858b1a6 314 SUPERFAMILY SSF53448 5 219 5.91E-45 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_5161 99a15bc3a277459f4218d89e97dba40a 126 PANTHER PTHR26402 4 120 1.2E-23 T 19-04-2016 AMED_5161 99a15bc3a277459f4218d89e97dba40a 126 SMART SM00448 4 117 5.8E-18 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5161 99a15bc3a277459f4218d89e97dba40a 126 Gene3D G3DSA:3.40.50.2300 3 122 4.4E-29 T 19-04-2016 AMED_5161 99a15bc3a277459f4218d89e97dba40a 126 Pfam PF00072 Response regulator receiver domain 6 118 1.7E-21 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5161 99a15bc3a277459f4218d89e97dba40a 126 SUPERFAMILY SSF52172 3 122 5.41E-27 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5161 99a15bc3a277459f4218d89e97dba40a 126 PANTHER PTHR26402:SF583 4 120 1.2E-23 T 19-04-2016 AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 Pfam PF00106 short chain dehydrogenase 16 210 1.1E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 PANTHER PTHR24320 8 282 1.2E-84 T 19-04-2016 AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 3.0E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 3.0E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 3.0E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.0E-12 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 SUPERFAMILY SSF51735 13 245 7.39E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6219 93f964aafa039d8bb9f83ee7dea7d9cf 318 Gene3D G3DSA:3.40.50.720 13 235 3.3E-48 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8254 8f636263bf39e249b796f61b8ddcb774 254 Pfam PF01061 ABC-2 type transporter 5 215 2.7E-31 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_8254 8f636263bf39e249b796f61b8ddcb774 254 PANTHER PTHR30294 1 252 7.7E-37 T 19-04-2016 AMED_8254 8f636263bf39e249b796f61b8ddcb774 254 PIRSF PIRSF006648 1 254 5.5E-45 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_9131 51adafb6ca3a8e27f85f1ce4054d445e 137 SUPERFAMILY SSF54593 3 136 4.59E-31 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_9131 51adafb6ca3a8e27f85f1ce4054d445e 137 Gene3D G3DSA:3.10.180.10 9 134 9.5E-31 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_9131 51adafb6ca3a8e27f85f1ce4054d445e 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 131 9.4E-21 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 Gene3D G3DSA:3.40.50.150 163 333 5.1E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 PANTHER PTHR10108:SF17 160 332 9.6E-27 T 19-04-2016 AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 SUPERFAMILY SSF46785 11 87 1.05E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 PANTHER PTHR10108 160 332 9.6E-27 T 19-04-2016 AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 Pfam PF13847 Methyltransferase domain 166 274 6.8E-20 T 19-04-2016 IPR025714 Methyltransferase domain AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 SUPERFAMILY SSF53335 156 343 5.98E-34 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4163 cef3b7e04d7f362bd142187208a2bafe 343 Gene3D G3DSA:1.10.10.10 7 80 1.2E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4317 058a776e79befbe15628ac8e3e16bee6 372 Pfam PF13556 PucR C-terminal helix-turn-helix domain 304 349 1.2E-14 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_3379 d6321aed1bab834a2692244909d8fdc9 243 SMART SM00882 7 203 5.9E-4 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_3379 d6321aed1bab834a2692244909d8fdc9 243 PANTHER PTHR13707 86 223 2.1E-13 T 19-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 AMED_3379 d6321aed1bab834a2692244909d8fdc9 243 Gene3D G3DSA:3.40.810.20 2 240 1.7E-62 T 19-04-2016 AMED_3379 d6321aed1bab834a2692244909d8fdc9 243 SUPERFAMILY SSF100950 2 239 3.35E-49 T 19-04-2016 AMED_3379 d6321aed1bab834a2692244909d8fdc9 243 PANTHER PTHR13707:SF35 86 223 2.1E-13 T 19-04-2016 AMED_7999 1d6bb2ac4f10035df9af62d39dd8b4c5 217 PANTHER PTHR10344 5 200 4.3E-29 T 19-04-2016 AMED_7999 1d6bb2ac4f10035df9af62d39dd8b4c5 217 SUPERFAMILY SSF52540 5 202 1.08E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7999 1d6bb2ac4f10035df9af62d39dd8b4c5 217 Gene3D G3DSA:3.40.50.300 7 201 1.5E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7999 1d6bb2ac4f10035df9af62d39dd8b4c5 217 Pfam PF02223 Thymidylate kinase 10 190 8.7E-23 T 19-04-2016 AMED_7999 1d6bb2ac4f10035df9af62d39dd8b4c5 217 ProSitePatterns PS01331 Thymidylate kinase signature. 97 109 - T 19-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMED_7629 1461f12c856925f11b83244c8b21ef58 121 PANTHER PTHR35908:SF2 1 116 1.5E-24 T 19-04-2016 AMED_7629 1461f12c856925f11b83244c8b21ef58 121 PANTHER PTHR35908 1 116 1.5E-24 T 19-04-2016 AMED_7629 1461f12c856925f11b83244c8b21ef58 121 SUPERFAMILY SSF54593 1 119 6.85E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7629 1461f12c856925f11b83244c8b21ef58 121 Gene3D G3DSA:3.10.180.10 1 119 3.0E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8485 772f50f956e8b7883533129a9b52a78f 596 Pfam PF11228 Protein of unknown function (DUF3027) 37 227 8.7E-80 T 19-04-2016 IPR021391 Protein of unknown function DUF3027 AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 Gene3D G3DSA:1.20.1250.20 262 462 8.5E-21 T 19-04-2016 AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 Gene3D G3DSA:1.20.1250.20 14 190 1.6E-27 T 19-04-2016 AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 PANTHER PTHR23501 11 464 1.7E-171 T 19-04-2016 AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 Pfam PF07690 Major Facilitator Superfamily 18 411 1.1E-41 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 PANTHER PTHR23501:SF15 11 464 1.7E-171 T 19-04-2016 AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 SUPERFAMILY SSF103473 12 201 5.23E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7887 5c81c8682d3a957875fa56c436e02bd6 470 SUPERFAMILY SSF103473 247 463 5.23E-60 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 PANTHER PTHR10907 5 173 1.9E-20 T 19-04-2016 AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 Gene3D G3DSA:3.40.50.1820 253 338 1.0E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 Gene3D G3DSA:3.40.50.1820 3 202 1.0E-48 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 SUPERFAMILY SSF53474 252 338 2.16E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 SUPERFAMILY SSF53474 6 174 2.16E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 PANTHER PTHR10907:SF33 5 173 1.9E-20 T 19-04-2016 AMED_4204 0a690f1e55f8be5232e3f126bfe66af9 340 Pfam PF00756 Putative esterase 31 291 3.0E-20 T 19-04-2016 IPR000801 Putative esterase AMED_3849 7e0064a7d66670a7d50774961ccc0d83 394 Gene3D G3DSA:3.20.20.140 10 36 9.6E-48 T 19-04-2016 AMED_3849 7e0064a7d66670a7d50774961ccc0d83 394 Gene3D G3DSA:3.20.20.140 77 392 9.6E-48 T 19-04-2016 AMED_3849 7e0064a7d66670a7d50774961ccc0d83 394 SUPERFAMILY SSF51556 90 392 1.75E-53 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3849 7e0064a7d66670a7d50774961ccc0d83 394 SUPERFAMILY SSF51556 7 36 1.75E-53 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_3849 7e0064a7d66670a7d50774961ccc0d83 394 Pfam PF04909 Amidohydrolase 97 392 3.0E-21 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_8573 6ed479853e0fa4406dc44fd6f6db7eab 336 SUPERFAMILY SSF51695 23 198 6.02E-16 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_8573 6ed479853e0fa4406dc44fd6f6db7eab 336 Pfam PF16670 Phosphoinositide phospholipase C, Ca2+-dependent 100 190 1.7E-11 T 19-04-2016 IPR032075 Phosphoinositide phospholipase C, Ca2+-dependent AMED_5689 2f0dec0eb4318e33bd474ae6d953bd48 75 SUPERFAMILY SSF55961 5 69 5.77E-6 T 19-04-2016 AMED_6327 e5f1995f03ab254288e55f5e86797c07 439 PIRSF PIRSF006603 4 438 3.0E-50 T 19-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 AMED_6327 e5f1995f03ab254288e55f5e86797c07 439 Pfam PF01554 MatE 237 388 1.5E-15 T 19-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 AMED_6327 e5f1995f03ab254288e55f5e86797c07 439 Pfam PF01554 MatE 20 180 8.2E-25 T 19-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 AMED_6327 e5f1995f03ab254288e55f5e86797c07 439 PANTHER PTHR11206 12 430 3.1E-116 T 19-04-2016 AMED_6327 e5f1995f03ab254288e55f5e86797c07 439 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 407 5.8E-91 T 19-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 AMED_6327 e5f1995f03ab254288e55f5e86797c07 439 PANTHER PTHR11206:SF94 12 430 3.1E-116 T 19-04-2016 AMED_0735 d12359bd6f140ed24d6bae45c7fd8ea1 274 SUPERFAMILY SSF53474 29 259 1.97E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0735 d12359bd6f140ed24d6bae45c7fd8ea1 274 Pfam PF12740 Chlorophyllase enzyme 33 150 3.9E-10 T 19-04-2016 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164|UniPathway: UPA00674 AMED_0735 d12359bd6f140ed24d6bae45c7fd8ea1 274 Gene3D G3DSA:3.40.50.1820 30 253 2.2E-26 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3586 e73be34ef074b165440276d1f00c4266 256 PANTHER PTHR10587 72 255 1.5E-32 T 19-04-2016 AMED_3586 e73be34ef074b165440276d1f00c4266 256 SUPERFAMILY SSF88713 65 255 7.17E-40 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_3586 e73be34ef074b165440276d1f00c4266 256 Gene3D G3DSA:3.20.20.370 63 255 5.6E-44 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3586 e73be34ef074b165440276d1f00c4266 256 Pfam PF01522 Polysaccharide deacetylase 69 189 1.8E-22 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3860 23fb7d2b783529ddf94db71f27e763bb 367 Gene3D G3DSA:3.40.710.10 21 342 2.3E-50 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3860 23fb7d2b783529ddf94db71f27e763bb 367 PANTHER PTHR22935 18 363 2.2E-26 T 19-04-2016 AMED_3860 23fb7d2b783529ddf94db71f27e763bb 367 SUPERFAMILY SSF56601 230 361 1.59E-52 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3860 23fb7d2b783529ddf94db71f27e763bb 367 SUPERFAMILY SSF56601 12 199 1.59E-52 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3860 23fb7d2b783529ddf94db71f27e763bb 367 Pfam PF00144 Beta-lactamase 25 344 1.1E-40 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 63 223 5.6E-28 T 19-04-2016 AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 PANTHER PTHR11579 5 54 4.3E-47 T 19-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 PANTHER PTHR11579:SF0 5 54 4.3E-47 T 19-04-2016 AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 169 184 - T 19-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 PANTHER PTHR11579 76 249 4.3E-47 T 19-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 SUPERFAMILY SSF53335 15 211 4.87E-27 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 PANTHER PTHR11579:SF0 76 249 4.3E-47 T 19-04-2016 AMED_6789 e1b51a971139fdad3ff6a07a6416fb09 391 Gene3D G3DSA:3.40.50.150 19 251 2.4E-52 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1154 0cf4d46fd8950309ce281b59040e02ab 452 Pfam PF13416 Bacterial extracellular solute-binding protein 74 388 6.6E-31 T 19-04-2016 AMED_1154 0cf4d46fd8950309ce281b59040e02ab 452 Gene3D G3DSA:3.40.190.10 341 398 1.3E-29 T 19-04-2016 AMED_1154 0cf4d46fd8950309ce281b59040e02ab 452 Gene3D G3DSA:3.40.190.10 49 161 1.3E-29 T 19-04-2016 AMED_1154 0cf4d46fd8950309ce281b59040e02ab 452 SUPERFAMILY SSF53850 25 448 2.0E-61 T 19-04-2016 AMED_1154 0cf4d46fd8950309ce281b59040e02ab 452 Gene3D G3DSA:3.40.190.10 162 340 4.1E-27 T 19-04-2016 AMED_1154 0cf4d46fd8950309ce281b59040e02ab 452 PANTHER PTHR30061 1 450 3.0E-51 T 19-04-2016 AMED_6593 e6864f59dd48b55e4996d09ed8f2c696 236 Pfam PF02627 Carboxymuconolactone decarboxylase family 21 96 8.8E-5 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_6593 e6864f59dd48b55e4996d09ed8f2c696 236 Pfam PF02627 Carboxymuconolactone decarboxylase family 160 229 4.4E-6 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_6593 e6864f59dd48b55e4996d09ed8f2c696 236 Gene3D G3DSA:1.20.1290.10 5 231 1.1E-22 T 19-04-2016 IPR029032 AhpD-like AMED_6593 e6864f59dd48b55e4996d09ed8f2c696 236 SUPERFAMILY SSF69118 6 235 8.48E-32 T 19-04-2016 IPR029032 AhpD-like AMED_4275 3a984290eb92d776849a08225421874d 316 PANTHER PTHR10366:SF323 7 311 1.8E-115 T 19-04-2016 AMED_4275 3a984290eb92d776849a08225421874d 316 Pfam PF16363 GDP-mannose 4,6 dehydratase 10 306 7.7E-52 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4275 3a984290eb92d776849a08225421874d 316 Gene3D G3DSA:3.90.25.10 176 313 2.9E-46 T 19-04-2016 AMED_4275 3a984290eb92d776849a08225421874d 316 Gene3D G3DSA:3.40.50.720 7 175 2.1E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4275 3a984290eb92d776849a08225421874d 316 SUPERFAMILY SSF51735 7 313 1.9E-88 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4275 3a984290eb92d776849a08225421874d 316 PANTHER PTHR10366 7 311 1.8E-115 T 19-04-2016 AMED_5913 4d675c8eeba8ed2c11a18de0b6043133 70 SUPERFAMILY SSF46955 13 62 9.16E-9 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_5913 4d675c8eeba8ed2c11a18de0b6043133 70 Gene3D G3DSA:1.10.10.10 15 61 6.1E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5913 4d675c8eeba8ed2c11a18de0b6043133 70 Pfam PF12728 Helix-turn-helix domain 14 61 2.1E-6 T 19-04-2016 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 SUPERFAMILY SSF46689 5 84 4.46E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.2E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.4E-12 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 Gene3D G3DSA:1.10.357.10 8 198 5.6E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 SUPERFAMILY SSF48498 81 196 1.66E-20 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 PANTHER PTHR30055 2 197 1.2E-27 T 19-04-2016 AMED_4089 dddf8ac7e88e1a0586ab28e166b5e3f4 199 Pfam PF13977 Bacterial transcriptional repressor 85 189 1.6E-13 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 SUPERFAMILY SSF103473 256 429 5.62E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 SUPERFAMILY SSF103473 475 501 5.62E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 SUPERFAMILY SSF103473 11 201 5.62E-67 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PANTHER PTHR23501:SF73 16 509 7.6E-189 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 410 429 1.9E-6 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 1.9E-6 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 1.9E-6 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 1.9E-6 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PRINTS PR01036 Tetracycline resistance protein TetB signature 210 228 1.9E-6 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 498 3.2E-80 T 19-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 Pfam PF07690 Major Facilitator Superfamily 27 419 1.7E-58 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 PANTHER PTHR23501 16 509 7.6E-189 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 Gene3D G3DSA:1.20.1250.20 23 200 9.3E-32 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 Gene3D G3DSA:1.20.1250.20 480 508 8.4E-21 T 19-04-2016 AMED_5671 6fe767e53d89b48d557588c10ac4365e 517 Gene3D G3DSA:1.20.1250.20 278 435 8.4E-21 T 19-04-2016 AMED_7927 2609e59d2465b896e8662d910c9dcc94 203 Pfam PF10067 Predicted membrane protein (DUF2306) 44 195 1.2E-31 T 19-04-2016 IPR018750 Protein of unknown function DUF2306, membrane AMED_8302 495577b441af01672c29345104321da3 576 Pfam PF10592 AIPR protein 258 523 1.3E-44 T 19-04-2016 IPR018891 Abortive bacteriophage infection, resistance AMED_2944 c3a05848473c57d60e0712e64df0f026 224 Gene3D G3DSA:1.10.10.60 6 61 3.4E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 PANTHER PTHR30055:SF10 3 209 1.4E-15 T 19-04-2016 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 2.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 2.2E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 PANTHER PTHR30055 3 209 1.4E-15 T 19-04-2016 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 62 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_2944 c3a05848473c57d60e0712e64df0f026 224 Gene3D G3DSA:1.10.357.10 62 207 1.7E-13 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 7.7E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2944 c3a05848473c57d60e0712e64df0f026 224 SUPERFAMILY SSF46689 7 81 1.15E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 Gene3D G3DSA:1.10.357.10 8 190 2.6E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 SUPERFAMILY SSF48498 99 188 8.9E-6 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 SUPERFAMILY SSF46689 4 84 1.33E-12 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 PANTHER PTHR30055 1 200 6.9E-16 T 19-04-2016 AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.1E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.1E-5 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_6036 dee052281b66e36cac158453fdb7e8cc 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 61 4.4E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3161 49e94f6a5b72c5836d1b2dda5e6b23a6 254 Pfam PF12730 ABC-2 family transporter protein 9 188 2.9E-8 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_8538 9d3c070ea7db5140f60ad61a9f8439e9 245 PANTHER PTHR10245:SF20 2 244 1.1E-33 T 19-04-2016 AMED_8538 9d3c070ea7db5140f60ad61a9f8439e9 245 Gene3D G3DSA:1.10.260.40 1 35 8.7E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_8538 9d3c070ea7db5140f60ad61a9f8439e9 245 PANTHER PTHR10245 2 244 1.1E-33 T 19-04-2016 AMED_4629 04678ebef0179dbfc3f050d9ebb05d3d 119 SMART SM00422 1 63 6.3E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4629 04678ebef0179dbfc3f050d9ebb05d3d 119 Gene3D G3DSA:1.10.1660.10 48 113 1.2E-10 T 19-04-2016 AMED_4629 04678ebef0179dbfc3f050d9ebb05d3d 119 Pfam PF13411 MerR HTH family regulatory protein 1 61 4.0E-16 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4629 04678ebef0179dbfc3f050d9ebb05d3d 119 PANTHER PTHR30204 1 94 7.9E-15 T 19-04-2016 AMED_4629 04678ebef0179dbfc3f050d9ebb05d3d 119 SUPERFAMILY SSF46955 1 111 1.06E-23 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4629 04678ebef0179dbfc3f050d9ebb05d3d 119 Gene3D G3DSA:1.10.1660.10 1 47 2.5E-17 T 19-04-2016 AMED_3621 a0db51e59ee27804946ff01c2f9161d1 320 SUPERFAMILY SSF47090 146 210 4.24E-13 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3621 a0db51e59ee27804946ff01c2f9161d1 320 Gene3D G3DSA:1.10.101.10 148 216 5.0E-13 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3621 a0db51e59ee27804946ff01c2f9161d1 320 Gene3D G3DSA:1.10.530.10 223 273 3.6E-4 T 19-04-2016 AMED_3621 a0db51e59ee27804946ff01c2f9161d1 320 SUPERFAMILY SSF53955 226 308 1.35E-8 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_3621 a0db51e59ee27804946ff01c2f9161d1 320 Pfam PF13560 Helix-turn-helix domain 8 70 6.7E-8 T 19-04-2016 AMED_3621 a0db51e59ee27804946ff01c2f9161d1 320 Pfam PF01471 Putative peptidoglycan binding domain 158 209 5.1E-8 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_1448 6b14a07ed62b7750bbb1d3ea3fad42af 141 Pfam PF15585 Immunity protein 7 14 137 8.3E-44 T 19-04-2016 IPR028965 Immunity protein 7 AMED_5562 b5f1edd76744e531c3025c6d6fae773e 54 SUPERFAMILY SSF52172 1 42 3.98E-7 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5562 b5f1edd76744e531c3025c6d6fae773e 54 Pfam PF03861 ANTAR domain 1 42 7.4E-17 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5562 b5f1edd76744e531c3025c6d6fae773e 54 SMART SM01012 1 43 2.4E-12 T 19-04-2016 IPR005561 ANTAR domain GO:0003723 AMED_5562 b5f1edd76744e531c3025c6d6fae773e 54 Gene3D G3DSA:1.10.10.10 1 46 1.9E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2187 a6930e65f4cc8fcf8f5f2814381852d4 215 Pfam PF11241 Protein of unknown function (DUF3043) 32 211 1.3E-61 T 19-04-2016 IPR021403 Protein of unknown function DUF3043 AMED_8255 2f0456302bc20086273fd8231c527e76 204 Gene3D G3DSA:3.20.20.80 8 193 7.8E-25 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_8255 2f0456302bc20086273fd8231c527e76 204 SUPERFAMILY SSF51445 8 194 1.33E-19 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8255 2f0456302bc20086273fd8231c527e76 204 Pfam PF01183 Glycosyl hydrolases family 25 12 183 1.5E-11 T 19-04-2016 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMED_9356 146990cc78ef34dfbeda81525f2800b3 214 Pfam PF08445 FR47-like protein 99 132 4.6E-6 T 19-04-2016 IPR013653 FR47-like GO:0016747 AMED_9356 146990cc78ef34dfbeda81525f2800b3 214 SUPERFAMILY SSF55729 9 170 5.93E-12 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9356 146990cc78ef34dfbeda81525f2800b3 214 Gene3D G3DSA:3.40.630.30 39 136 1.2E-10 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6142 446cdbb4131c14779ca93300cba820fb 383 Pfam PF13458 Periplasmic binding protein 33 368 5.9E-54 T 19-04-2016 IPR028081 Leucine-binding protein domain AMED_6142 446cdbb4131c14779ca93300cba820fb 383 PANTHER PTHR30483 2 368 3.0E-66 T 19-04-2016 AMED_6142 446cdbb4131c14779ca93300cba820fb 383 PANTHER PTHR30483:SF6 2 368 3.0E-66 T 19-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMED_6142 446cdbb4131c14779ca93300cba820fb 383 SUPERFAMILY SSF53822 33 370 1.01E-74 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_6142 446cdbb4131c14779ca93300cba820fb 383 Gene3D G3DSA:3.40.50.2300 33 229 2.4E-49 T 19-04-2016 AMED_8819 6b6f9c922f795c9ad7ce84246adca46e 117 SUPERFAMILY SSF51182 16 109 4.14E-18 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_8819 6b6f9c922f795c9ad7ce84246adca46e 117 Gene3D G3DSA:2.60.120.10 15 108 5.3E-19 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8819 6b6f9c922f795c9ad7ce84246adca46e 117 Pfam PF07883 Cupin domain 41 101 1.6E-13 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_6672 da75d26bd5eb8aa76ad73eb324d2bd0b 474 PANTHER PTHR11785 161 467 1.5E-128 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6672 da75d26bd5eb8aa76ad73eb324d2bd0b 474 PANTHER PTHR11785 9 143 1.5E-128 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6672 da75d26bd5eb8aa76ad73eb324d2bd0b 474 Pfam PF13520 Amino acid permease 29 441 7.2E-55 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6672 da75d26bd5eb8aa76ad73eb324d2bd0b 474 PIRSF PIRSF006060 10 472 6.1E-87 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_7478 d1f46a0e18938d3e7088c8964525801f 354 PANTHER PTHR11732 4 313 8.5E-110 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_7478 d1f46a0e18938d3e7088c8964525801f 354 Pfam PF00248 Aldo/keto reductase family 19 313 5.3E-68 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7478 d1f46a0e18938d3e7088c8964525801f 354 SUPERFAMILY SSF51430 5 313 4.45E-92 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7478 d1f46a0e18938d3e7088c8964525801f 354 Gene3D G3DSA:3.20.20.100 12 320 6.2E-93 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_8252 c632c1d764053e1a2dd08f2013bb7ecd 199 Pfam PF03551 Transcriptional regulator PadR-like family 8 84 6.0E-10 T 19-04-2016 IPR005149 Transcription regulator PadR, N-terminal AMED_8252 c632c1d764053e1a2dd08f2013bb7ecd 199 SUPERFAMILY SSF46785 4 132 5.51E-21 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8252 c632c1d764053e1a2dd08f2013bb7ecd 199 Gene3D G3DSA:1.10.10.10 4 89 5.0E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8252 c632c1d764053e1a2dd08f2013bb7ecd 199 PANTHER PTHR33169 1 194 3.0E-29 T 19-04-2016 AMED_8252 c632c1d764053e1a2dd08f2013bb7ecd 199 PANTHER PTHR33169:SF5 1 194 3.0E-29 T 19-04-2016 AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 Pfam PF04909 Amidohydrolase 70 404 6.8E-21 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 PANTHER PTHR21240 72 198 4.0E-13 T 19-04-2016 AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 Gene3D G3DSA:3.20.20.140 331 415 3.1E-45 T 19-04-2016 AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 Gene3D G3DSA:3.20.20.140 33 203 3.1E-45 T 19-04-2016 AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 Gene3D G3DSA:3.20.20.140 239 295 3.1E-45 T 19-04-2016 AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 SUPERFAMILY SSF51556 236 301 4.28E-50 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 SUPERFAMILY SSF51556 6 202 4.28E-50 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_7208 8d1636ce09a71b2c1a38c6b24d363b62 424 SUPERFAMILY SSF51556 333 412 4.28E-50 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMED_6838 5074543ce5b9335b7afa92e6008ba05e 492 Pfam PF13520 Amino acid permease 34 445 7.8E-35 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6838 5074543ce5b9335b7afa92e6008ba05e 492 PANTHER PTHR11785 7 490 4.3E-38 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6838 5074543ce5b9335b7afa92e6008ba05e 492 PIRSF PIRSF006060 1 483 4.2E-62 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 Pfam PF00248 Aldo/keto reductase family 13 268 4.7E-57 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 Gene3D G3DSA:3.20.20.100 5 269 8.3E-73 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 SUPERFAMILY SSF51430 4 269 8.64E-75 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 PANTHER PTHR11732 1 269 1.2E-96 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 PRINTS PR00069 Aldo-keto reductase signature 204 228 3.3E-7 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 PRINTS PR00069 Aldo-keto reductase signature 133 150 3.3E-7 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 PRINTS PR00069 Aldo-keto reductase signature 102 120 3.3E-7 T 19-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMED_7880 6bcb20d17109ac9a4757a762783fa941 271 PANTHER PTHR11732:SF275 1 269 1.2E-96 T 19-04-2016 AMED_6577 9aceeb42de39d8501c637ebde5798548 272 PIRSF PIRSF019254 1 272 2.8E-89 T 19-04-2016 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_6577 9aceeb42de39d8501c637ebde5798548 272 PANTHER PTHR37165 9 272 8.6E-30 T 19-04-2016 AMED_6577 9aceeb42de39d8501c637ebde5798548 272 PANTHER PTHR37165:SF1 9 272 8.6E-30 T 19-04-2016 AMED_6577 9aceeb42de39d8501c637ebde5798548 272 Pfam PF04454 Encapsulating protein for peroxidase 1 257 1.0E-78 T 19-04-2016 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_5313 923b7158af60a7f104f5d685f12f6d37 254 SMART SM00824 Thioesterase 24 244 1.3E-5 T 19-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AMED_5313 923b7158af60a7f104f5d685f12f6d37 254 Pfam PF00975 Thioesterase domain 22 233 4.8E-40 T 19-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 AMED_5313 923b7158af60a7f104f5d685f12f6d37 254 Gene3D G3DSA:3.40.50.1820 13 249 1.3E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5313 923b7158af60a7f104f5d685f12f6d37 254 PANTHER PTHR11487 7 254 2.3E-70 T 19-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 AMED_5313 923b7158af60a7f104f5d685f12f6d37 254 SUPERFAMILY SSF53474 7 243 8.24E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 1 270 3.1E-54 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 72 88 2.5E-10 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 159 177 2.5E-10 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 110 134 2.5E-10 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 PRINTS PR01782 Mycobacterial cell entry (MCE) protein signature 10 30 2.5E-10 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 Pfam PF02470 MlaD protein 20 94 5.7E-14 T 19-04-2016 IPR003399 Mce/MlaD AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 PANTHER PTHR33371:SF8 1 293 1.3E-86 T 19-04-2016 AMED_7841 07e8fb04d8e554786e0fb23520b53049 307 PANTHER PTHR33371 1 293 1.3E-86 T 19-04-2016 AMED_1390 badf1575a37bcfe60c598414cc2eb080 713 Pfam PF02687 FtsX-like permease family 594 699 3.6E-8 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_1390 badf1575a37bcfe60c598414cc2eb080 713 Pfam PF02687 FtsX-like permease family 137 257 2.1E-18 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_1390 badf1575a37bcfe60c598414cc2eb080 713 PANTHER PTHR30489 106 712 1.8E-75 T 19-04-2016 AMED_1390 badf1575a37bcfe60c598414cc2eb080 713 PANTHER PTHR30489:SF0 106 712 1.8E-75 T 19-04-2016 AMED_1305 6a5d27724543b7cabb61f80119f3c46b 216 PANTHER PTHR30055 5 151 5.1E-18 T 19-04-2016 AMED_1305 6a5d27724543b7cabb61f80119f3c46b 216 Gene3D G3DSA:1.10.357.10 6 210 2.4E-23 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1305 6a5d27724543b7cabb61f80119f3c46b 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 4.6E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1305 6a5d27724543b7cabb61f80119f3c46b 216 PANTHER PTHR30055:SF74 5 151 5.1E-18 T 19-04-2016 AMED_1305 6a5d27724543b7cabb61f80119f3c46b 216 SUPERFAMILY SSF46689 8 84 4.62E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 Gene3D G3DSA:3.20.20.70 13 336 1.6E-27 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 Pfam PF04055 Radical SAM superfamily 21 169 6.0E-9 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 SUPERFAMILY SSF102114 16 329 2.62E-24 T 19-04-2016 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 PANTHER PTHR11228 14 358 2.9E-42 T 19-04-2016 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 Pfam PF13353 4Fe-4S single cluster domain 20 137 3.9E-5 T 19-04-2016 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 PANTHER PTHR11228:SF7 14 358 2.9E-42 T 19-04-2016 AMED_8163 9657ec4ca97285158a2e868c90e5fb2e 373 TIGRFAM TIGR04269 SAM_SPASM_FxsB: radical SAM/SPASM domain protein, FxsB family 12 359 1.2E-122 T 19-04-2016 IPR026335 Radical SAM/SPASM domain, FxsB family AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 Gene3D G3DSA:3.40.50.1820 11 269 3.4E-41 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 PANTHER PTHR10992 12 136 2.9E-30 T 19-04-2016 AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 PANTHER PTHR10992 155 260 2.9E-30 T 19-04-2016 AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 SUPERFAMILY SSF53474 5 268 3.57E-40 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 223 237 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.3E-7 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4203 f0cabbdc13dc31857d3156086e232d61 288 Pfam PF00561 alpha/beta hydrolase fold 29 264 4.8E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_6879 e2814817c238740cfee79cca28b21939 221 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 29 197 7.7E-18 T 19-04-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type AMED_1773 249af4877d76782046b3ee1ea378ee7e 167 PANTHER PTHR37042 10 163 1.4E-13 T 19-04-2016 AMED_2711 799f5c1a5e6bbaa57d6861ebb9573d21 128 Pfam PF06103 Bacterial protein of unknown function (DUF948) 6 86 2.9E-21 T 19-04-2016 IPR009293 Uncharacterised protein family UPF0478 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 Gene3D G3DSA:3.50.50.60 4 70 1.2E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 Gene3D G3DSA:3.50.50.60 289 368 1.2E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 Gene3D G3DSA:3.50.50.60 110 194 1.2E-52 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 Pfam PF01494 FAD binding domain 4 367 1.5E-119 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 8.5E-48 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 316 8.5E-48 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 334 352 8.5E-48 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 8.5E-48 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 316 332 8.5E-48 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 8.5E-48 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 SUPERFAMILY SSF51905 288 375 5.07E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 SUPERFAMILY SSF51905 4 189 5.07E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PANTHER PTHR13789 4 444 5.7E-103 T 19-04-2016 AMED_5991 e1d8d23fcd21d7fcb6c4da50e7815367 580 PANTHER PTHR13789:SF252 4 444 5.7E-103 T 19-04-2016 AMED_9230 3c4b1836f14540e8aaa54c51759e3787 220 Pfam PF02036 SCP-2 sterol transfer family 115 214 2.3E-11 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_9230 3c4b1836f14540e8aaa54c51759e3787 220 Gene3D G3DSA:3.30.1050.10 109 214 2.2E-15 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_9230 3c4b1836f14540e8aaa54c51759e3787 220 SUPERFAMILY SSF55718 110 219 3.77E-18 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_5723 0d57b7e427c5c5a979bbafe1b8752bae 112 Pfam PF04075 Domain of unknown function (DUF385) 10 58 1.9E-5 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_3981 afffccfaccc183158b8d999d59751f99 191 SUPERFAMILY SSF48498 81 185 5.25E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3981 afffccfaccc183158b8d999d59751f99 191 Gene3D G3DSA:1.10.357.10 5 187 3.5E-40 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_3981 afffccfaccc183158b8d999d59751f99 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.3E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3981 afffccfaccc183158b8d999d59751f99 191 PANTHER PTHR30055 2 157 2.6E-44 T 19-04-2016 AMED_3981 afffccfaccc183158b8d999d59751f99 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 6.7E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3981 afffccfaccc183158b8d999d59751f99 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.7E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3981 afffccfaccc183158b8d999d59751f99 191 SUPERFAMILY SSF46689 3 84 3.74E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3981 afffccfaccc183158b8d999d59751f99 191 PANTHER PTHR30055:SF43 2 157 2.6E-44 T 19-04-2016 AMED_0160 456db456265cd3e1e6422d7486fd9354 220 Pfam PF06197 Protein of unknown function (DUF998) 23 210 5.5E-24 T 19-04-2016 IPR009339 Protein of unknown function DUF998 AMED_0457 504e8f209b775bade1cd49ee93fa4d2d 212 SMART SM00421 151 206 0.0055 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_0457 504e8f209b775bade1cd49ee93fa4d2d 212 SUPERFAMILY SSF46894 157 212 2.99E-6 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_0457 504e8f209b775bade1cd49ee93fa4d2d 212 Gene3D G3DSA:1.10.10.10 157 211 3.1E-8 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4886 e62555090b16c67901e5e880160d9998 143 Pfam PF01638 HxlR-like helix-turn-helix 33 120 4.7E-29 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_4886 e62555090b16c67901e5e880160d9998 143 PANTHER PTHR33204 11 137 3.5E-47 T 19-04-2016 AMED_4886 e62555090b16c67901e5e880160d9998 143 PANTHER PTHR33204:SF7 11 137 3.5E-47 T 19-04-2016 AMED_4886 e62555090b16c67901e5e880160d9998 143 Gene3D G3DSA:1.10.10.10 11 131 6.2E-47 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4886 e62555090b16c67901e5e880160d9998 143 SUPERFAMILY SSF46785 18 131 1.08E-32 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 PANTHER PTHR18964:SF2 6 61 3.5E-23 T 19-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 PANTHER PTHR18964:SF2 82 317 3.5E-23 T 19-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 94 322 3.0E-40 T 19-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 PANTHER PTHR18964 6 61 3.5E-23 T 19-04-2016 AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 PANTHER PTHR18964 82 317 3.5E-23 T 19-04-2016 AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 SUPERFAMILY SSF53756 6 353 9.63E-50 T 19-04-2016 AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 Gene3D G3DSA:3.40.50.2000 214 361 3.0E-23 T 19-04-2016 AMED_8909 5cd52ebe1eb4e6097fc5b20f2c94827f 369 Gene3D G3DSA:3.40.50.2000 6 213 3.5E-42 T 19-04-2016 AMED_7403 5379f3f602a40cc8604a757a7f279b73 276 SUPERFAMILY SSF53448 32 254 3.18E-32 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7403 5379f3f602a40cc8604a757a7f279b73 276 Gene3D G3DSA:3.90.550.10 32 250 4.7E-18 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7403 5379f3f602a40cc8604a757a7f279b73 276 Pfam PF00535 Glycosyl transferase family 2 32 164 4.4E-25 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_7403 5379f3f602a40cc8604a757a7f279b73 276 PANTHER PTHR10859 32 269 8.1E-47 T 19-04-2016 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 153 165 - T 19-04-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 12 481 1.2E-144 T 19-04-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 PANTHER PTHR11654 269 446 5.7E-119 T 19-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 PANTHER PTHR11654 8 221 5.7E-119 T 19-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 PANTHER PTHR11654:SF119 269 446 5.7E-119 T 19-04-2016 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 PANTHER PTHR11654:SF119 8 221 5.7E-119 T 19-04-2016 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 Pfam PF00854 POT family 91 449 2.2E-54 T 19-04-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 SUPERFAMILY SSF103473 12 213 3.66E-27 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 SUPERFAMILY SSF103473 269 480 3.66E-27 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 Gene3D G3DSA:1.20.1250.20 28 210 2.7E-14 T 19-04-2016 AMED_8821 b329a615b9d6dee47ea1cb7d62920003 485 Gene3D G3DSA:1.20.1250.20 287 478 2.2E-7 T 19-04-2016 AMED_9345 6c31b0d9f70f08763c6a0e0eae4ba23f 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 434 1.7E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9345 6c31b0d9f70f08763c6a0e0eae4ba23f 435 Gene3D G3DSA:3.30.565.10 318 414 5.5E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9345 6c31b0d9f70f08763c6a0e0eae4ba23f 435 SUPERFAMILY SSF55874 346 434 3.97E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1474 efb481c1471f9891d6b7adc680dfdacf 497 SUPERFAMILY SSF53474 5 484 1.91E-104 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1474 efb481c1471f9891d6b7adc680dfdacf 497 PANTHER PTHR11559 5 483 6.3E-117 T 19-04-2016 AMED_1474 efb481c1471f9891d6b7adc680dfdacf 497 Gene3D G3DSA:3.40.50.1820 4 485 6.3E-119 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1474 efb481c1471f9891d6b7adc680dfdacf 497 Pfam PF00135 Carboxylesterase family 5 470 4.2E-93 T 19-04-2016 IPR002018 Carboxylesterase, type B AMED_1474 efb481c1471f9891d6b7adc680dfdacf 497 PANTHER PTHR11559:SF142 5 483 6.3E-117 T 19-04-2016 AMED_1474 efb481c1471f9891d6b7adc680dfdacf 497 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 176 191 - T 19-04-2016 IPR019826 Carboxylesterase type B, active site AMED_0210 61d9b20d1c14294fe27c2c18eacf16e7 90 SUPERFAMILY SSF47336 15 88 2.09E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0210 61d9b20d1c14294fe27c2c18eacf16e7 90 Gene3D G3DSA:1.10.1200.10 27 88 2.2E-8 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0210 61d9b20d1c14294fe27c2c18eacf16e7 90 Pfam PF00550 Phosphopantetheine attachment site 16 75 1.6E-4 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_0074 a991bd84ff34f3ab54238c84a7f92315 461 Pfam PF01425 Amidase 25 442 8.6E-86 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0074 a991bd84ff34f3ab54238c84a7f92315 461 PANTHER PTHR11895 1 459 1.0E-115 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0074 a991bd84ff34f3ab54238c84a7f92315 461 SUPERFAMILY SSF75304 1 459 1.44E-118 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_0074 a991bd84ff34f3ab54238c84a7f92315 461 Gene3D G3DSA:3.90.1300.10 2 458 1.3E-118 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_6394 54f86bcffebbee24f62dd7226a77c100 241 Gene3D G3DSA:3.40.190.10 124 162 1.9E-6 T 19-04-2016 AMED_6394 54f86bcffebbee24f62dd7226a77c100 241 PANTHER PTHR30346:SF0 3 207 5.0E-42 T 19-04-2016 AMED_6394 54f86bcffebbee24f62dd7226a77c100 241 PANTHER PTHR30346 3 207 5.0E-42 T 19-04-2016 AMED_6394 54f86bcffebbee24f62dd7226a77c100 241 Gene3D G3DSA:3.40.190.10 18 99 9.2E-12 T 19-04-2016 AMED_6394 54f86bcffebbee24f62dd7226a77c100 241 SUPERFAMILY SSF53850 16 186 1.7E-22 T 19-04-2016 AMED_6394 54f86bcffebbee24f62dd7226a77c100 241 Pfam PF03466 LysR substrate binding domain 16 187 5.8E-21 T 19-04-2016 IPR005119 LysR, substrate-binding AMED_8416 c95c816a6586f31cad98fd8484c56c5c 184 Gene3D G3DSA:3.10.490.10 20 138 2.2E-4 T 19-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 SUPERFAMILY SSF51735 111 239 8.98E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 Gene3D G3DSA:3.40.50.720 145 223 2.9E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 Pfam PF00107 Zinc-binding dehydrogenase 150 232 2.0E-9 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 Gene3D G3DSA:3.90.180.10 1 144 4.7E-39 T 19-04-2016 IPR011032 GroES-like AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 PANTHER PTHR11695:SF605 15 299 2.4E-56 T 19-04-2016 AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 SMART SM00829 10 297 2.0E-10 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 SUPERFAMILY SSF50129 1 131 5.48E-36 T 19-04-2016 IPR011032 GroES-like AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 87 1.2E-7 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMED_1657 97537f0c3fc6f0e4eac8981dbf498d3d 300 PANTHER PTHR11695 15 299 2.4E-56 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_4324 720b2ea67236b8444441dad95b912de9 549 Gene3D G3DSA:1.10.620.20 1 519 1.7E-176 T 19-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 AMED_4324 720b2ea67236b8444441dad95b912de9 549 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 18 243 1.9E-55 T 19-04-2016 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 AMED_4324 720b2ea67236b8444441dad95b912de9 549 SUPERFAMILY SSF47240 4 512 4.35E-123 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_7367 8877be23b4a7398673d01668ada97178 605 SUPERFAMILY SSF53850 324 596 3.15E-40 T 19-04-2016 AMED_7367 8877be23b4a7398673d01668ada97178 605 Pfam PF12849 PBP superfamily domain 320 527 2.3E-23 T 19-04-2016 IPR024370 PBP domain AMED_7367 8877be23b4a7398673d01668ada97178 605 Gene3D G3DSA:3.40.190.10 402 553 1.8E-24 T 19-04-2016 AMED_7367 8877be23b4a7398673d01668ada97178 605 PANTHER PTHR30570 230 581 2.5E-24 T 19-04-2016 AMED_0647 45dac61c24256c80e5266d358d04fb04 403 Pfam PF16911 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus 281 393 2.3E-24 T 19-04-2016 IPR031641 Phthiocerol/phthiodiolone dimycocerosyl transferase, C-terminal KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- AMED_0647 45dac61c24256c80e5266d358d04fb04 403 SUPERFAMILY SSF52777 167 401 4.89E-43 T 19-04-2016 AMED_0647 45dac61c24256c80e5266d358d04fb04 403 SUPERFAMILY SSF52777 23 151 1.48E-11 T 19-04-2016 AMED_5269 5e6c86d941e35566b439b849cfff8f41 122 PANTHER PTHR36221 10 120 3.1E-24 T 19-04-2016 AMED_5269 5e6c86d941e35566b439b849cfff8f41 122 Pfam PF05331 Protein of unknown function (DUF742) 11 120 2.2E-28 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 Gene3D G3DSA:3.40.50.150 6 207 7.3E-68 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 19 276 2.0E-77 T 19-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 278 47.852 T 19-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 Pfam PF00398 Ribosomal RNA adenine dimethylase 23 275 4.5E-47 T 19-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 Gene3D G3DSA:1.10.8.100 213 277 7.5E-22 T 19-04-2016 IPR023165 rRNA adenine dimethylase-like AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 SMART SM00650 35 209 4.5E-68 T 19-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 78 - T 19-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 PANTHER PTHR11727 9 277 6.3E-81 T 19-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMED_8248 34e22f8811d287bd110b586fd78b6e7c 278 SUPERFAMILY SSF53335 19 276 2.19E-65 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4125 95bec77a3d9227a6982bbe7919de9bb5 678 Gene3D G3DSA:2.60.120.260 547 675 6.3E-17 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_4125 95bec77a3d9227a6982bbe7919de9bb5 678 Gene3D G3DSA:2.60.420.10 436 492 1.5E-7 T 19-04-2016 AMED_4125 95bec77a3d9227a6982bbe7919de9bb5 678 SUPERFAMILY SSF48208 59 502 8.11E-46 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_4125 95bec77a3d9227a6982bbe7919de9bb5 678 SUPERFAMILY SSF49785 548 675 5.1E-16 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3437 6de67956c92d39334bca731a9f612cb1 86 PANTHER PTHR33884:SF1 2 85 5.7E-21 T 19-04-2016 AMED_3437 6de67956c92d39334bca731a9f612cb1 86 PANTHER PTHR33884 2 85 5.7E-21 T 19-04-2016 AMED_3437 6de67956c92d39334bca731a9f612cb1 86 Pfam PF04226 Transglycosylase associated protein 33 82 1.3E-9 T 19-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 AMED_3419 3c9a96936988962353f6a7e7ff76a36a 474 Pfam PF13520 Amino acid permease 17 419 1.2E-49 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_3419 3c9a96936988962353f6a7e7ff76a36a 474 PANTHER PTHR11785 6 461 4.4E-71 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_3419 3c9a96936988962353f6a7e7ff76a36a 474 PIRSF PIRSF006060 1 470 2.1E-74 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_0661 a941044c3a2c864ac189aaca6abf5140 413 Gene3D G3DSA:1.20.1250.20 239 407 3.7E-16 T 19-04-2016 AMED_0661 a941044c3a2c864ac189aaca6abf5140 413 Gene3D G3DSA:1.20.1250.20 10 198 1.7E-11 T 19-04-2016 AMED_0661 a941044c3a2c864ac189aaca6abf5140 413 SUPERFAMILY SSF103473 11 407 1.83E-38 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0661 a941044c3a2c864ac189aaca6abf5140 413 Pfam PF07690 Major Facilitator Superfamily 241 402 3.9E-11 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_0661 a941044c3a2c864ac189aaca6abf5140 413 PANTHER PTHR23534 11 404 1.2E-48 T 19-04-2016 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 5.9E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 5.9E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 5.9E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 5.9E-13 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 PANTHER PTHR33164:SF4 15 139 5.6E-20 T 19-04-2016 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 Gene3D G3DSA:1.10.10.10 10 143 9.7E-33 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 SUPERFAMILY SSF46785 12 142 4.32E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 SMART SM00347 31 131 2.4E-19 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 PANTHER PTHR33164 15 139 5.6E-20 T 19-04-2016 AMED_5862 bf067e5f55267aeef3913f8c9acc7583 156 Pfam PF01047 MarR family 43 95 7.9E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6538 1f18540240dfb2ef8e0e503a5f1c1acb 200 ProDom PD338207 MEMBRANE INTEGRAL TRANSMEMBRANE PLASMID PROBABLE MB0995 RV0970/MT0998 1 108 9.0E-5 T 19-04-2016 AMED_6538 1f18540240dfb2ef8e0e503a5f1c1acb 200 Pfam PF17197 Domain of unknown function (DUF5134) 34 199 3.3E-29 T 19-04-2016 IPR033458 Protein of unknown function DUF5134 AMED_4857 5fbc509dc32f7036483e5f388c913132 177 SUPERFAMILY SSF69118 9 163 7.42E-34 T 19-04-2016 IPR029032 AhpD-like AMED_4857 5fbc509dc32f7036483e5f388c913132 177 Gene3D G3DSA:1.20.1290.10 138 157 4.7E-25 T 19-04-2016 IPR029032 AhpD-like AMED_4857 5fbc509dc32f7036483e5f388c913132 177 Gene3D G3DSA:1.20.1290.10 10 70 4.7E-25 T 19-04-2016 IPR029032 AhpD-like AMED_4857 5fbc509dc32f7036483e5f388c913132 177 Pfam PF02627 Carboxymuconolactone decarboxylase family 27 72 5.6E-5 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_4857 5fbc509dc32f7036483e5f388c913132 177 Gene3D G3DSA:1.20.1290.10 71 137 5.1E-6 T 19-04-2016 IPR029032 AhpD-like AMED_4857 5fbc509dc32f7036483e5f388c913132 177 PANTHER PTHR35446 9 173 2.0E-16 T 19-04-2016 AMED_7851 adfcb864d3b54ae03ad4b9b13178f7ad 138 Gene3D G3DSA:3.10.180.10 4 137 8.6E-10 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7851 adfcb864d3b54ae03ad4b9b13178f7ad 138 PANTHER PTHR35908:SF1 64 137 3.1E-23 T 19-04-2016 AMED_7851 adfcb864d3b54ae03ad4b9b13178f7ad 138 PANTHER PTHR35908:SF1 1 25 3.1E-23 T 19-04-2016 AMED_7851 adfcb864d3b54ae03ad4b9b13178f7ad 138 SUPERFAMILY SSF54593 4 137 2.31E-12 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7851 adfcb864d3b54ae03ad4b9b13178f7ad 138 PANTHER PTHR35908 64 137 3.1E-23 T 19-04-2016 AMED_7851 adfcb864d3b54ae03ad4b9b13178f7ad 138 PANTHER PTHR35908 1 25 3.1E-23 T 19-04-2016 AMED_6501 38d5af20c2201cf6af582a8855bd80b0 543 SUPERFAMILY SSF53649 174 522 6.41E-36 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_6501 38d5af20c2201cf6af582a8855bd80b0 543 SUPERFAMILY SSF53649 31 110 6.41E-36 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_6501 38d5af20c2201cf6af582a8855bd80b0 543 Gene3D G3DSA:3.40.720.10 35 109 3.0E-24 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_6501 38d5af20c2201cf6af582a8855bd80b0 543 Gene3D G3DSA:3.40.720.10 472 529 3.0E-24 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_6501 38d5af20c2201cf6af582a8855bd80b0 543 Gene3D G3DSA:3.40.720.10 178 351 3.0E-24 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_6501 38d5af20c2201cf6af582a8855bd80b0 543 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 36 476 6.4E-20 T 19-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 AMED_7620 4f848e4338cff594cfb086208307ed76 472 PRINTS PR01217 Proline rich extensin signature 224 240 2.8E-11 T 19-04-2016 AMED_7620 4f848e4338cff594cfb086208307ed76 472 PRINTS PR01217 Proline rich extensin signature 203 224 2.8E-11 T 19-04-2016 AMED_7620 4f848e4338cff594cfb086208307ed76 472 PRINTS PR01217 Proline rich extensin signature 241 258 2.8E-11 T 19-04-2016 AMED_7620 4f848e4338cff594cfb086208307ed76 472 PRINTS PR01217 Proline rich extensin signature 124 136 2.8E-11 T 19-04-2016 AMED_7620 4f848e4338cff594cfb086208307ed76 472 PRINTS PR01217 Proline rich extensin signature 261 286 2.8E-11 T 19-04-2016 AMED_2577 db3aed3f5252e4e408a7cdb23b196fc5 83 Pfam PF11238 Protein of unknown function (DUF3039) 23 79 2.0E-29 T 19-04-2016 IPR021400 Protein of unknown function DUF3039 AMED_0317 240fb970e6d946e197e3921b5f744c72 402 PANTHER PTHR10907:SF33 23 284 2.8E-17 T 19-04-2016 AMED_0317 240fb970e6d946e197e3921b5f744c72 402 Gene3D G3DSA:3.40.50.1820 97 366 6.5E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0317 240fb970e6d946e197e3921b5f744c72 402 Pfam PF00756 Putative esterase 125 315 1.3E-9 T 19-04-2016 IPR000801 Putative esterase AMED_0317 240fb970e6d946e197e3921b5f744c72 402 PANTHER PTHR10907 23 284 2.8E-17 T 19-04-2016 AMED_0317 240fb970e6d946e197e3921b5f744c72 402 SUPERFAMILY SSF53474 112 364 1.06E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5988 0d1c2be0d2687451f1636e6b253e5a75 245 Pfam PF13803 Domain of unknown function (DUF4184) 1 230 4.4E-51 T 19-04-2016 IPR025238 Protein of unknown function DUF4184 AMED_5592 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 14 293 5.4E-58 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_5592 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 15 283 8.3E-32 T 19-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_5592 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 391 61.547 T 19-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMED_5592 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 SUPERFAMILY SSF55931 9 368 7.75E-74 T 19-04-2016 AMED_5592 87ee78b372bb0bf8d06e6e0cba3e7d1c 391 PANTHER PTHR36510 2 389 1.0E-73 T 19-04-2016 AMED_1368 0ea8cbbfc25f7610df97d51dc4db2fa1 158 SUPERFAMILY SSF52728 5 156 9.02E-37 T 19-04-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AMED_1368 0ea8cbbfc25f7610df97d51dc4db2fa1 158 Gene3D G3DSA:3.40.35.10 5 155 6.4E-40 T 19-04-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AMED_1368 0ea8cbbfc25f7610df97d51dc4db2fa1 158 Pfam PF03830 PTS system sorbose subfamily IIB component 5 145 5.8E-37 T 19-04-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AMED_1368 0ea8cbbfc25f7610df97d51dc4db2fa1 158 PANTHER PTHR33799 5 158 1.8E-35 T 19-04-2016 AMED_8955 91581c957559b05b081b75c2a9043d28 306 PANTHER PTHR30468 39 306 4.7E-80 T 19-04-2016 AMED_8955 91581c957559b05b081b75c2a9043d28 306 SUPERFAMILY SSF51197 39 306 1.56E-85 T 19-04-2016 AMED_8955 91581c957559b05b081b75c2a9043d28 306 Gene3D G3DSA:3.60.130.10 36 306 1.0E-86 T 19-04-2016 AMED_8955 91581c957559b05b081b75c2a9043d28 306 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 41 295 1.7E-59 T 19-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 AMED_3874 c5a38c126a46d8f70b1d3bb87f596881 464 Pfam PF05893 Acyl-CoA reductase (LuxC) 57 459 2.9E-76 T 19-04-2016 IPR008670 Acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723|UniPathway: UPA00569 AMED_3874 c5a38c126a46d8f70b1d3bb87f596881 464 SUPERFAMILY SSF53720 126 452 1.31E-10 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMED_7990 7ade707a5e1addd4b819504534efe241 334 SUPERFAMILY SSF53271 247 333 4.57E-13 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_7990 7ade707a5e1addd4b819504534efe241 334 Gene3D G3DSA:3.40.50.2020 210 332 1.1E-12 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_8056 a5c65c95a84ff26065677e456994de11 415 PANTHER PTHR30008:SF0 9 411 3.4E-119 T 19-04-2016 AMED_8056 a5c65c95a84ff26065677e456994de11 415 Pfam PF02601 Exonuclease VII, large subunit 333 408 1.1E-7 T 19-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMED_8056 a5c65c95a84ff26065677e456994de11 415 Pfam PF02601 Exonuclease VII, large subunit 135 352 8.2E-60 T 19-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMED_8056 a5c65c95a84ff26065677e456994de11 415 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 411 23.425 T 19-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMED_8056 a5c65c95a84ff26065677e456994de11 415 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 19 409 1.7E-111 T 19-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMED_8056 a5c65c95a84ff26065677e456994de11 415 Pfam PF13742 OB-fold nucleic acid binding domain 18 112 1.7E-13 T 19-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMED_8056 a5c65c95a84ff26065677e456994de11 415 PANTHER PTHR30008 9 411 3.4E-119 T 19-04-2016 AMED_1118 c2dcca0c9ceb4dca2833b6975c5b29a4 387 SUPERFAMILY SSF55486 221 353 2.02E-11 T 19-04-2016 AMED_1118 c2dcca0c9ceb4dca2833b6975c5b29a4 387 Pfam PF11350 Protein of unknown function (DUF3152) 172 384 2.1E-71 T 19-04-2016 IPR022603 Domain of unknown function DUF3152 AMED_6248 868d9312e6aeed47b00b0211eb962016 276 PANTHER PTHR14194:SF21 1 275 8.5E-55 T 19-04-2016 AMED_6248 868d9312e6aeed47b00b0211eb962016 276 Gene3D G3DSA:3.40.50.720 1 209 7.4E-39 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6248 868d9312e6aeed47b00b0211eb962016 276 PANTHER PTHR14194 1 275 8.5E-55 T 19-04-2016 AMED_6248 868d9312e6aeed47b00b0211eb962016 276 Pfam PF13460 NAD(P)H-binding 7 174 8.5E-24 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6248 868d9312e6aeed47b00b0211eb962016 276 SUPERFAMILY SSF51735 2 230 6.25E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_4431 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 274 7.3E-21 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4431 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 SUPERFAMILY SSF161098 7 281 5.76E-71 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4431 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 PANTHER PTHR32243 1 281 4.3E-120 T 19-04-2016 AMED_4431 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 Gene3D G3DSA:1.10.3720.10 9 268 5.1E-62 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4431 ecf3e9138a6f4d2c8ff0ce6682ca7575 281 PANTHER PTHR32243:SF8 1 281 4.3E-120 T 19-04-2016 AMED_1143 c1bd5bd34c8ade5bcfa69ee9d5bc4553 430 PANTHER PTHR33608 9 430 3.0E-157 T 19-04-2016 AMED_1143 c1bd5bd34c8ade5bcfa69ee9d5bc4553 430 Pfam PF01882 Protein of unknown function DUF58 186 271 9.7E-21 T 19-04-2016 IPR002881 Domain of unknown function DUF58 AMED_1143 c1bd5bd34c8ade5bcfa69ee9d5bc4553 430 PANTHER PTHR33608:SF3 9 430 3.0E-157 T 19-04-2016 AMED_2226 473a156614008b19c541b9451e69c4c7 387 PANTHER PTHR10795:SF440 61 313 3.4E-19 T 19-04-2016 AMED_2226 473a156614008b19c541b9451e69c4c7 387 Gene3D G3DSA:3.40.50.200 45 318 2.8E-44 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2226 473a156614008b19c541b9451e69c4c7 387 SUPERFAMILY SSF52743 44 315 4.97E-43 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2226 473a156614008b19c541b9451e69c4c7 387 PRINTS PR00723 Subtilisin serine protease family (S8) signature 254 270 4.2E-7 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2226 473a156614008b19c541b9451e69c4c7 387 PRINTS PR00723 Subtilisin serine protease family (S8) signature 62 81 4.2E-7 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2226 473a156614008b19c541b9451e69c4c7 387 PRINTS PR00723 Subtilisin serine protease family (S8) signature 96 109 4.2E-7 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_2226 473a156614008b19c541b9451e69c4c7 387 Pfam PF00082 Subtilase family 62 305 4.7E-13 T 19-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 AMED_2226 473a156614008b19c541b9451e69c4c7 387 PANTHER PTHR10795 61 313 3.4E-19 T 19-04-2016 IPR015500 Peptidase S8, subtilisin-related AMED_3026 a0b67257620da482d8b29192fb2d2454 141 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 29 138 2.3E-29 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_3026 a0b67257620da482d8b29192fb2d2454 141 PANTHER PTHR39428 1 141 4.5E-32 T 19-04-2016 AMED_3026 a0b67257620da482d8b29192fb2d2454 141 Pfam PF04075 Domain of unknown function (DUF385) 19 140 4.2E-32 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 SUPERFAMILY SSF52540 19 265 4.14E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 SMART SM00382 44 246 2.0E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 PANTHER PTHR24220:SF585 21 269 1.5E-106 T 19-04-2016 AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 Pfam PF00005 ABC transporter 35 190 9.2E-32 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 Gene3D G3DSA:3.40.50.300 16 264 1.2E-68 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 PANTHER PTHR24220 21 269 1.5E-106 T 19-04-2016 AMED_7364 0dabe7fa734a5b5f7f49e6269f23f7e6 271 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMED_5151 6d43d4290cf4d7e6f2828acf352524a3 119 Pfam PF02675 S-adenosylmethionine decarboxylase 11 117 1.5E-35 T 19-04-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 AMED_5151 6d43d4290cf4d7e6f2828acf352524a3 119 SUPERFAMILY SSF56276 7 117 4.32E-36 T 19-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 AMED_5151 6d43d4290cf4d7e6f2828acf352524a3 119 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 5 118 26.586 T 19-04-2016 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 AMED_5151 6d43d4290cf4d7e6f2828acf352524a3 119 PANTHER PTHR33866 1 117 1.0E-35 T 19-04-2016 AMED_5151 6d43d4290cf4d7e6f2828acf352524a3 119 Gene3D G3DSA:3.60.90.10 6 117 1.7E-40 T 19-04-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 AMED_5151 6d43d4290cf4d7e6f2828acf352524a3 119 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 7 117 6.9E-35 T 19-04-2016 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|UniPathway: UPA00331 AMED_2075 3bb13ca7a5c69bbc966d4fdc1b0b0427 117 PANTHER PTHR35908:SF1 1 114 8.1E-37 T 19-04-2016 AMED_2075 3bb13ca7a5c69bbc966d4fdc1b0b0427 117 PANTHER PTHR35908 1 114 8.1E-37 T 19-04-2016 AMED_2075 3bb13ca7a5c69bbc966d4fdc1b0b0427 117 Gene3D G3DSA:3.10.180.10 4 114 9.5E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2075 3bb13ca7a5c69bbc966d4fdc1b0b0427 117 SUPERFAMILY SSF54593 5 115 2.2E-15 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2608 5cb0eba6bcbae8ab6e8f8c46e809ea61 221 Pfam PF12502 Protein of unknown function (DUF3710) 45 212 1.2E-57 T 19-04-2016 IPR022183 Protein of unknown function DUF3710 AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 Gene3D G3DSA:3.90.1150.10 259 396 7.1E-30 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 PANTHER PTHR11601 6 391 1.9E-121 T 19-04-2016 AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 Pfam PF00266 Aminotransferase class-V 22 389 4.8E-57 T 19-04-2016 IPR000192 Aminotransferase class V domain AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 TIGRFAM TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein 3 391 1.7E-143 T 19-04-2016 IPR011340 Cysteine desulfurase-related AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 PANTHER PTHR11601:SF22 6 391 1.9E-121 T 19-04-2016 AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 SUPERFAMILY SSF53383 3 395 6.2E-78 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMED_4473 5be53fba7b8940b9a2e80210d10961e2 399 Gene3D G3DSA:3.40.640.10 36 258 1.9E-47 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMED_0534 8fd1b334307e96e51f52234254e617be 222 Pfam PF14011 EspG family 8 221 5.5E-35 T 19-04-2016 IPR025734 EspG family AMED_4373 985bed0e47607016b2475ef800329339 116 SUPERFAMILY SSF142906 1 104 4.71E-6 T 19-04-2016 AMED_4373 985bed0e47607016b2475ef800329339 116 Pfam PF04237 YjbR 14 99 3.4E-8 T 19-04-2016 IPR007351 Uncharacterised protein YjbR AMED_4307 653b6953e66f3093725cd5a9ad50c2f8 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 271 4.9E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4307 653b6953e66f3093725cd5a9ad50c2f8 280 SUPERFAMILY SSF161098 78 259 7.19E-33 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4307 653b6953e66f3093725cd5a9ad50c2f8 280 PANTHER PTHR30151 19 279 1.2E-68 T 19-04-2016 AMED_4307 653b6953e66f3093725cd5a9ad50c2f8 280 Gene3D G3DSA:1.10.3720.10 77 272 1.7E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4686 6894305e29b7bd844e62c2a03db83fe0 344 Pfam PF00589 Phage integrase family 158 321 6.1E-10 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_4686 6894305e29b7bd844e62c2a03db83fe0 344 SUPERFAMILY SSF47823 28 142 9.02E-11 T 19-04-2016 IPR010998 Integrase, Lambda-type, N-terminal AMED_4686 6894305e29b7bd844e62c2a03db83fe0 344 Gene3D G3DSA:1.10.150.130 28 143 3.2E-12 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMED_4686 6894305e29b7bd844e62c2a03db83fe0 344 Gene3D G3DSA:1.10.443.10 150 332 1.1E-41 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMED_4686 6894305e29b7bd844e62c2a03db83fe0 344 SUPERFAMILY SSF56349 149 341 8.24E-34 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMED_0724 7fb5a843c1d3e9351ce12904a29c4741 238 Pfam PF14230 Domain of unknown function (DUF4333) 157 228 1.7E-22 T 19-04-2016 IPR025637 Domain of unknown function DUF4333 AMED_4194 0cfb54db03ec49a37ffd6490345e6848 486 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 300 465 4.5E-16 T 19-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 6.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 6.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 64 75 6.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 6.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 6.9E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PANTHER PTHR24322 142 173 4.3E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PANTHER PTHR24322 5 123 4.3E-40 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 Gene3D G3DSA:3.40.50.720 3 211 2.5E-54 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 127 3.2E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 3.2E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 64 75 3.2E-8 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 Pfam PF00106 short chain dehydrogenase 3 183 4.8E-39 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_5445 319fd26f0519fab10d62084263c3cd28 218 SUPERFAMILY SSF51735 3 211 3.66E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7713 a25c1fdab4aa9e6bf67c259c94935a42 135 PANTHER PTHR34858 1 135 2.2E-37 T 19-04-2016 AMED_7713 a25c1fdab4aa9e6bf67c259c94935a42 135 Pfam PF14464 Prokaryotic homologs of the JAB domain 7 116 2.4E-26 T 19-04-2016 IPR028090 JAB domain, prokaryotic AMED_7713 a25c1fdab4aa9e6bf67c259c94935a42 135 PANTHER PTHR34858:SF1 1 135 2.2E-37 T 19-04-2016 AMED_7713 a25c1fdab4aa9e6bf67c259c94935a42 135 SMART SM00232 1 131 2.1E-25 T 19-04-2016 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 AMED_7713 a25c1fdab4aa9e6bf67c259c94935a42 135 Gene3D G3DSA:3.40.140.10 2 133 5.6E-33 T 19-04-2016 AMED_7713 a25c1fdab4aa9e6bf67c259c94935a42 135 SUPERFAMILY SSF102712 2 129 1.44E-25 T 19-04-2016 AMED_3117 e5d32d5184d4ca5da21d61d6ca6d20b4 142 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 23 138 2.4E-33 T 19-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AMED_3117 e5d32d5184d4ca5da21d61d6ca6d20b4 142 PANTHER PTHR41553:SF1 9 142 6.7E-19 T 19-04-2016 AMED_3117 e5d32d5184d4ca5da21d61d6ca6d20b4 142 PANTHER PTHR41553 9 142 6.7E-19 T 19-04-2016 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 SUPERFAMILY SSF143800 1 79 3.02E-22 T 19-04-2016 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 PRINTS PR01249 Ribosomal protein L31 signature 60 78 3.5E-17 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 3.5E-17 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 PRINTS PR01249 Ribosomal protein L31 signature 45 60 3.5E-17 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 25.622 T 19-04-2016 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 Pfam PF01197 Ribosomal protein L31 1 79 3.7E-30 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 9.5E-22 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5005 18b74007aa598d5858582ac2d50181b0 84 PANTHER PTHR33280 1 84 6.9E-32 T 19-04-2016 AMED_4302 2d2de708cfd570ea5174ef8a1a550c92 159 Pfam PF01814 Hemerythrin HHE cation binding domain 6 123 2.1E-14 T 19-04-2016 IPR012312 Haemerythrin-like AMED_4302 2d2de708cfd570ea5174ef8a1a550c92 159 PANTHER PTHR35585 1 152 9.2E-28 T 19-04-2016 AMED_4302 2d2de708cfd570ea5174ef8a1a550c92 159 Gene3D G3DSA:1.20.120.520 8 144 3.4E-14 T 19-04-2016 AMED_4302 2d2de708cfd570ea5174ef8a1a550c92 159 PANTHER PTHR35585:SF1 1 152 9.2E-28 T 19-04-2016 AMED_6214 df5bf04ac420b7804e3d6be6c6b51268 189 SUPERFAMILY SSF69118 1 181 1.2E-38 T 19-04-2016 IPR029032 AhpD-like AMED_6214 df5bf04ac420b7804e3d6be6c6b51268 189 PANTHER PTHR35446 1 189 1.8E-34 T 19-04-2016 AMED_6214 df5bf04ac420b7804e3d6be6c6b51268 189 PANTHER PTHR35446:SF1 1 189 1.8E-34 T 19-04-2016 AMED_6214 df5bf04ac420b7804e3d6be6c6b51268 189 Gene3D G3DSA:1.20.1290.10 35 174 1.6E-20 T 19-04-2016 IPR029032 AhpD-like AMED_2526 b799e9d223edb22f9fc7f78c87d5232e 199 PANTHER PTHR42305 19 199 6.8E-28 T 19-04-2016 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 PANTHER PTHR30173:SF7 1 366 6.4E-151 T 19-04-2016 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 Gene3D G3DSA:1.10.1740.10 3 73 2.2E-12 T 19-04-2016 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 Pfam PF04542 Sigma-70 region 2 8 72 8.0E-11 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 157 3.3E-13 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 PANTHER PTHR30173 1 366 6.4E-151 T 19-04-2016 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 SUPERFAMILY SSF88946 3 75 5.49E-13 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 SUPERFAMILY SSF88659 97 157 5.98E-8 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMED_4689 1c86551532572f5180be2a1f2e2803b5 400 Gene3D G3DSA:1.10.10.10 98 157 7.1E-10 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2050 4193894680119aacd9ab1714cc60c2f6 162 SUPERFAMILY SSF47598 100 149 6.99E-10 T 19-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 AMED_2050 4193894680119aacd9ab1714cc60c2f6 162 Gene3D G3DSA:1.10.1220.10 102 142 7.0E-10 T 19-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMED_4403 832827411ff4862fb580990cf6b5604b 225 PANTHER PTHR22789:SF2 3 224 6.0E-83 T 19-04-2016 AMED_4403 832827411ff4862fb580990cf6b5604b 225 PANTHER PTHR22789 3 224 6.0E-83 T 19-04-2016 AMED_4403 832827411ff4862fb580990cf6b5604b 225 SUPERFAMILY SSF53639 11 219 8.44E-64 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4403 832827411ff4862fb580990cf6b5604b 225 Gene3D G3DSA:3.40.225.10 13 224 1.7E-69 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4403 832827411ff4862fb580990cf6b5604b 225 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 18 193 1.1E-48 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4403 832827411ff4862fb580990cf6b5604b 225 SMART SM01007 16 195 8.0E-64 T 19-04-2016 IPR001303 Class II aldolase/adducin N-terminal AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PRINTS PR01438 Universal stress protein signature 243 255 6.1E-14 T 19-04-2016 IPR006015 Universal stress protein A AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PRINTS PR01438 Universal stress protein signature 154 172 6.1E-14 T 19-04-2016 IPR006015 Universal stress protein A AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PRINTS PR01438 Universal stress protein signature 261 283 6.1E-14 T 19-04-2016 IPR006015 Universal stress protein A AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PANTHER PTHR31964:SF42 8 87 9.4E-23 T 19-04-2016 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PANTHER PTHR31964:SF42 229 283 9.4E-23 T 19-04-2016 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PANTHER PTHR31964 8 87 9.4E-23 T 19-04-2016 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 PANTHER PTHR31964 229 283 9.4E-23 T 19-04-2016 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 Gene3D G3DSA:3.40.50.620 140 283 7.0E-31 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 Gene3D G3DSA:3.40.50.620 7 139 1.4E-31 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 Pfam PF00582 Universal stress protein family 8 143 1.4E-20 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 Pfam PF00582 Universal stress protein family 155 283 2.9E-22 T 19-04-2016 IPR006016 UspA GO:0006950 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 SUPERFAMILY SSF52402 8 149 4.44E-29 T 19-04-2016 AMED_4445 c03831488baa185e3941c4ca0a64a23a 286 SUPERFAMILY SSF52402 155 283 3.85E-25 T 19-04-2016 AMED_8555 9fb3662979105167c985da71b56efce7 488 PANTHER PTHR24362:SF160 8 274 1.2E-85 T 19-04-2016 AMED_8555 9fb3662979105167c985da71b56efce7 488 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 19 42 - T 19-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 AMED_8555 9fb3662979105167c985da71b56efce7 488 SMART SM00220 13 274 4.6E-48 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8555 9fb3662979105167c985da71b56efce7 488 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 131 143 - T 19-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 AMED_8555 9fb3662979105167c985da71b56efce7 488 Gene3D G3DSA:1.10.510.10 79 264 9.0E-40 T 19-04-2016 AMED_8555 9fb3662979105167c985da71b56efce7 488 SUPERFAMILY SSF56112 9 291 1.91E-62 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_8555 9fb3662979105167c985da71b56efce7 488 Gene3D G3DSA:3.30.200.20 8 78 1.5E-20 T 19-04-2016 AMED_8555 9fb3662979105167c985da71b56efce7 488 Pfam PF00069 Protein kinase domain 13 219 3.0E-39 T 19-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMED_8555 9fb3662979105167c985da71b56efce7 488 PANTHER PTHR24362 8 274 1.2E-85 T 19-04-2016 AMED_7964 b63c9b73ead39be09d0df621b594062d 144 SMART SM00347 32 136 2.2E-8 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7964 b63c9b73ead39be09d0df621b594062d 144 SUPERFAMILY SSF46785 9 141 3.94E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7964 b63c9b73ead39be09d0df621b594062d 144 Gene3D G3DSA:1.10.10.10 6 142 5.3E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7964 b63c9b73ead39be09d0df621b594062d 144 PANTHER PTHR33164:SF6 10 130 1.0E-30 T 19-04-2016 AMED_7964 b63c9b73ead39be09d0df621b594062d 144 Pfam PF01047 MarR family 39 100 2.9E-10 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7964 b63c9b73ead39be09d0df621b594062d 144 PANTHER PTHR33164 10 130 1.0E-30 T 19-04-2016 AMED_8489 59446e8cb668ae983a420a8d94668452 128 SMART SM00357 3 65 1.5E-20 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMED_8489 59446e8cb668ae983a420a8d94668452 128 Gene3D G3DSA:2.40.50.140 2 67 6.6E-20 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8489 59446e8cb668ae983a420a8d94668452 128 PANTHER PTHR11544:SF43 2 124 2.0E-32 T 19-04-2016 AMED_8489 59446e8cb668ae983a420a8d94668452 128 SUPERFAMILY SSF50249 2 65 4.65E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_8489 59446e8cb668ae983a420a8d94668452 128 PANTHER PTHR11544 2 124 2.0E-32 T 19-04-2016 AMED_8489 59446e8cb668ae983a420a8d94668452 128 Pfam PF00313 'Cold-shock' DNA-binding domain 3 63 2.8E-14 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8489 59446e8cb668ae983a420a8d94668452 128 PRINTS PR00050 Cold shock protein signature 4 19 6.2E-11 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8489 59446e8cb668ae983a420a8d94668452 128 PRINTS PR00050 Cold shock protein signature 38 56 6.2E-11 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_8489 59446e8cb668ae983a420a8d94668452 128 PRINTS PR00050 Cold shock protein signature 24 33 6.2E-11 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMED_1359 6d202ea7a6a36bbfb9923a22abbe28be 859 Gene3D G3DSA:1.25.40.10 25 299 4.4E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1359 6d202ea7a6a36bbfb9923a22abbe28be 859 Pfam PF12770 CHAT domain 616 848 1.6E-39 T 19-04-2016 IPR024983 CHAT domain AMED_1359 6d202ea7a6a36bbfb9923a22abbe28be 859 SUPERFAMILY SSF48452 117 228 1.57E-12 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2070 571194e1bf33514dc99bb94b6b9462fe 320 SUPERFAMILY SSF55729 128 317 1.56E-22 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2070 571194e1bf33514dc99bb94b6b9462fe 320 Pfam PF00583 Acetyltransferase (GNAT) family 226 309 3.3E-11 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2070 571194e1bf33514dc99bb94b6b9462fe 320 SUPERFAMILY SSF55729 1 110 9.22E-11 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2070 571194e1bf33514dc99bb94b6b9462fe 320 Gene3D G3DSA:3.40.630.30 3 108 7.5E-10 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2070 571194e1bf33514dc99bb94b6b9462fe 320 Gene3D G3DSA:3.40.630.30 191 317 4.3E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1310 768e58b6b8b8655c5fa397c0c3e1e707 359 Gene3D G3DSA:3.40.50.2300 80 194 2.4E-27 T 19-04-2016 AMED_1310 768e58b6b8b8655c5fa397c0c3e1e707 359 Gene3D G3DSA:3.40.50.2300 195 350 3.2E-44 T 19-04-2016 AMED_1310 768e58b6b8b8655c5fa397c0c3e1e707 359 PANTHER PTHR32196 80 339 7.9E-52 T 19-04-2016 AMED_1310 768e58b6b8b8655c5fa397c0c3e1e707 359 Pfam PF13407 Periplasmic binding protein domain 80 332 1.5E-50 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_1310 768e58b6b8b8655c5fa397c0c3e1e707 359 PANTHER PTHR32196:SF9 80 339 7.9E-52 T 19-04-2016 AMED_1310 768e58b6b8b8655c5fa397c0c3e1e707 359 SUPERFAMILY SSF53822 68 352 1.25E-69 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_6337 12b5a364601f7385cc98caec1f7d1b36 97 PANTHER PTHR36441 2 97 4.2E-29 T 19-04-2016 AMED_6337 12b5a364601f7385cc98caec1f7d1b36 97 SUPERFAMILY SSF103007 1 95 1.44E-30 T 19-04-2016 IPR007546 Protein of unknown function DUF503 AMED_6337 12b5a364601f7385cc98caec1f7d1b36 97 Pfam PF04456 Protein of unknown function (DUF503) 3 89 1.1E-31 T 19-04-2016 IPR007546 Protein of unknown function DUF503 AMED_6337 12b5a364601f7385cc98caec1f7d1b36 97 Gene3D G3DSA:3.30.70.1120 1 96 1.9E-35 T 19-04-2016 IPR007546 Protein of unknown function DUF503 AMED_6176 6ba11a8a79979c7c7339e458810cbc14 220 Pfam PF00583 Acetyltransferase (GNAT) family 141 185 3.2E-4 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6176 6ba11a8a79979c7c7339e458810cbc14 220 Gene3D G3DSA:3.40.630.30 83 192 1.3E-7 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6176 6ba11a8a79979c7c7339e458810cbc14 220 SUPERFAMILY SSF55729 113 193 8.33E-9 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6193 a9e9ecf5349ee1a0270cd42e26b248db 168 Pfam PF06271 RDD family 24 157 1.2E-13 T 19-04-2016 IPR010432 RDD AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 388 3.9E-17 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 SUPERFAMILY SSF47203 239 393 2.74E-24 T 19-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 Gene3D G3DSA:1.20.140.10 226 389 1.9E-21 T 19-04-2016 AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 Gene3D G3DSA:2.40.110.10 132 225 5.0E-15 T 19-04-2016 AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 PANTHER PTHR10909:SF207 14 409 6.7E-183 T 19-04-2016 AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 SUPERFAMILY SSF56645 12 233 9.03E-29 T 19-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AMED_1547 29ddf9c3d6759b6dc1723da94f1566e6 568 PANTHER PTHR10909 14 409 6.7E-183 T 19-04-2016 AMED_1514 32b52296d8fd3e09f79332bd85ec0acc 341 PANTHER PTHR32196:SF21 1 336 1.0E-80 T 19-04-2016 AMED_1514 32b52296d8fd3e09f79332bd85ec0acc 341 PANTHER PTHR32196 1 336 1.0E-80 T 19-04-2016 AMED_1514 32b52296d8fd3e09f79332bd85ec0acc 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 325 1.2E-40 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_8540 46c2b63f6ca10a78a6c8b7eb0acd1a25 227 Gene3D G3DSA:1.25.40.10 149 182 2.5E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8540 46c2b63f6ca10a78a6c8b7eb0acd1a25 227 Gene3D G3DSA:1.25.40.10 1 96 2.5E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8540 46c2b63f6ca10a78a6c8b7eb0acd1a25 227 SUPERFAMILY SSF48452 2 95 4.17E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_8540 46c2b63f6ca10a78a6c8b7eb0acd1a25 227 SUPERFAMILY SSF48452 152 184 4.17E-6 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_0493 a748b19428f0f90eec482550712acdb0 158 PANTHER PTHR10057 11 158 9.6E-31 T 19-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 AMED_0493 a748b19428f0f90eec482550712acdb0 158 Pfam PF03073 TspO/MBR family 17 155 2.0E-40 T 19-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 AMED_0493 a748b19428f0f90eec482550712acdb0 158 PIRSF PIRSF005859 5 158 1.6E-41 T 19-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 PANTHER PTHR10617:SF101 1 302 2.8E-12 T 19-04-2016 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 Gene3D G3DSA:3.50.50.60 2 176 2.1E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 Gene3D G3DSA:3.50.50.60 264 336 2.1E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 PANTHER PTHR10617 1 302 2.8E-12 T 19-04-2016 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 Pfam PF01494 FAD binding domain 2 318 4.1E-25 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 SUPERFAMILY SSF51905 1 171 6.92E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 SUPERFAMILY SSF51905 272 363 6.92E-39 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 9.0E-9 T 19-04-2016 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 9.0E-9 T 19-04-2016 AMED_5309 0e9ea59164ad796e0d178032fbe192e3 396 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 9.0E-9 T 19-04-2016 AMED_7206 4b0cad9520f0403382abee846a4d9965 233 SUPERFAMILY SSF53213 2 224 2.22E-9 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_1129 6023fc6b4b00ec9f6795fad8049aae10 134 Pfam PF11528 Protein of unknown function (DUF3224) 7 132 3.2E-35 T 19-04-2016 IPR021607 Protein of unknown function DUF3224 AMED_1129 6023fc6b4b00ec9f6795fad8049aae10 134 Gene3D G3DSA:2.40.350.10 5 134 8.1E-39 T 19-04-2016 IPR023159 SO1590-like domain AMED_1129 6023fc6b4b00ec9f6795fad8049aae10 134 SUPERFAMILY SSF159238 6 134 1.44E-29 T 19-04-2016 IPR023159 SO1590-like domain AMED_6286 b66c60c58c90592be08e0106bc88b10d 144 SUPERFAMILY SSF48619 32 143 2.05E-33 T 19-04-2016 IPR016090 Phospholipase A2 domain KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 AMED_6286 b66c60c58c90592be08e0106bc88b10d 144 Gene3D G3DSA:1.20.90.10 32 143 2.3E-41 T 19-04-2016 IPR016090 Phospholipase A2 domain KEGG: 00564+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 AMED_6286 b66c60c58c90592be08e0106bc88b10d 144 Pfam PF09056 Prokaryotic phospholipase A2 38 143 5.4E-41 T 19-04-2016 IPR015141 Phospholipase A2, prokaryotic/fungal AMED_6286 b66c60c58c90592be08e0106bc88b10d 144 PANTHER PTHR40787 33 143 5.4E-40 T 19-04-2016 AMED_6286 b66c60c58c90592be08e0106bc88b10d 144 PANTHER PTHR40787:SF2 33 143 5.4E-40 T 19-04-2016 AMED_2241 20ab1d104063be77248922b84514208c 453 SUPERFAMILY SSF140453 33 117 1.7E-9 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_2241 20ab1d104063be77248922b84514208c 453 Gene3D G3DSA:1.10.287.1060 34 117 6.0E-8 T 19-04-2016 AMED_2241 20ab1d104063be77248922b84514208c 453 Pfam PF06013 Proteins of 100 residues with WXG 34 114 1.3E-9 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 59 223 1.9E-12 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 375 508 1.1E-9 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 SUPERFAMILY SSF161098 3 232 9.16E-39 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 SUPERFAMILY SSF161098 250 510 1.2E-36 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 Gene3D G3DSA:1.10.3720.10 251 512 2.5E-35 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 Gene3D G3DSA:1.10.3720.10 4 234 1.4E-35 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 PANTHER PTHR30183 3 517 8.8E-98 T 19-04-2016 AMED_8041 2177c126a9cd6939b507cbc1d8e9d892 518 PANTHER PTHR30183:SF8 3 517 8.8E-98 T 19-04-2016 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 Pfam PF00296 Luciferase-like monooxygenase 16 376 1.2E-62 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 Gene3D G3DSA:3.20.20.30 339 427 2.7E-142 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 Gene3D G3DSA:3.20.20.30 2 300 2.7E-142 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 PANTHER PTHR30011 1 430 1.3E-191 T 19-04-2016 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 4 421 4.4E-181 T 19-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 PANTHER PTHR30011:SF18 1 430 1.3E-191 T 19-04-2016 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 PIRSF PIRSF000337 1 436 1.2E-169 T 19-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMED_4306 8b9fec44cc2c8feaae85b6e86c21bc12 437 SUPERFAMILY SSF51679 2 427 5.1E-136 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_6726 3b7e7b143742211c6ce10b8800aeafdd 145 Gene3D G3DSA:1.10.10.10 35 97 4.9E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6726 3b7e7b143742211c6ce10b8800aeafdd 145 SMART SM00347 28 129 1.8E-15 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_6726 3b7e7b143742211c6ce10b8800aeafdd 145 SUPERFAMILY SSF46785 16 140 1.12E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6726 3b7e7b143742211c6ce10b8800aeafdd 145 PANTHER PTHR39515 1 145 1.9E-26 T 19-04-2016 AMED_6726 3b7e7b143742211c6ce10b8800aeafdd 145 Pfam PF12802 MarR family 35 92 6.9E-11 T 19-04-2016 AMED_6726 3b7e7b143742211c6ce10b8800aeafdd 145 Gene3D G3DSA:1.10.287.100 99 144 6.4E-14 T 19-04-2016 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 AMED_1148 9f65677f185afd9ea54186646d16a6d2 571 Pfam PF09972 Predicted membrane protein (DUF2207) 61 522 3.1E-42 T 19-04-2016 IPR018702 Protein of unknown function DUF2207, membrane AMED_1812 f82015adeb966a43ee477d88a21c020c 434 Gene3D G3DSA:1.10.10.60 11 44 2.3E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8651 927de6515916e4ab1ed9bf631266d2eb 203 Pfam PF14016 Protein of unknown function (DUF4232) 64 180 1.4E-15 T 19-04-2016 IPR025326 Protein of unknown function DUF4232 AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 Pfam PF17132 alpha-L-rhamnosidase 509 887 1.1E-11 T 19-04-2016 IPR033400 Alpha-L-rhamnosidase RhaM AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 Gene3D G3DSA:2.60.120.260 1003 1104 9.6E-14 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 SUPERFAMILY SSF49785 983 1105 1.98E-18 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 PANTHER PTHR36848 9 259 6.3E-143 T 19-04-2016 AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 PANTHER PTHR36848 405 1105 6.3E-143 T 19-04-2016 AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 PANTHER PTHR36848:SF2 9 259 6.3E-143 T 19-04-2016 AMED_3662 d9be1948c2cda93d7de59b96848fc5e1 1117 PANTHER PTHR36848:SF2 405 1105 6.3E-143 T 19-04-2016 AMED_8430 16f6ff5807022c8f0c58a690b90efa47 181 PANTHER PTHR35400 7 178 5.1E-16 T 19-04-2016 AMED_8430 16f6ff5807022c8f0c58a690b90efa47 181 Pfam PF05685 Putative restriction endonuclease 10 159 5.2E-20 T 19-04-2016 IPR008538 Domain of unknown function DUF820 AMED_8430 16f6ff5807022c8f0c58a690b90efa47 181 PANTHER PTHR35400:SF1 7 178 5.1E-16 T 19-04-2016 AMED_8430 16f6ff5807022c8f0c58a690b90efa47 181 Gene3D G3DSA:3.90.1570.10 5 159 3.0E-16 T 19-04-2016 IPR012296 Nuclease, putative, TT1808 AMED_8430 16f6ff5807022c8f0c58a690b90efa47 181 SUPERFAMILY SSF52980 4 157 1.39E-17 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_6843 ad106990186723bd437244ccf8e8bae6 151 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 26 149 4.7E-22 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_6843 ad106990186723bd437244ccf8e8bae6 151 Pfam PF13474 SnoaL-like domain 39 150 5.8E-11 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6843 ad106990186723bd437244ccf8e8bae6 151 SUPERFAMILY SSF54427 26 149 4.9E-25 T 19-04-2016 IPR032710 NTF2-like domain AMED_6843 ad106990186723bd437244ccf8e8bae6 151 Gene3D G3DSA:3.10.450.50 19 149 4.5E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_5920 47c8946fb29b2789f899a0c1397aeb69 301 Gene3D G3DSA:1.10.287.1060 6 98 9.0E-6 T 19-04-2016 AMED_5920 47c8946fb29b2789f899a0c1397aeb69 301 SUPERFAMILY SSF140453 52 100 9.55E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_3487 507ac0490e93afa30b653c7543ea4ceb 333 PANTHER PTHR34184:SF1 25 333 8.9E-40 T 19-04-2016 AMED_3487 507ac0490e93afa30b653c7543ea4ceb 333 PANTHER PTHR34184 25 333 8.9E-40 T 19-04-2016 AMED_3487 507ac0490e93afa30b653c7543ea4ceb 333 Pfam PF03773 Predicted permease 52 182 3.1E-30 T 19-04-2016 IPR005524 Predicted permease DUF318 AMED_3487 507ac0490e93afa30b653c7543ea4ceb 333 Pfam PF03773 Predicted permease 217 328 1.8E-11 T 19-04-2016 IPR005524 Predicted permease DUF318 AMED_0399 ba489599dc52ad47d345e06e1c4d0f56 202 Pfam PF13649 Methyltransferase domain 44 134 3.0E-17 T 19-04-2016 AMED_0399 ba489599dc52ad47d345e06e1c4d0f56 202 PANTHER PTHR10108 44 193 6.8E-18 T 19-04-2016 AMED_0399 ba489599dc52ad47d345e06e1c4d0f56 202 SUPERFAMILY SSF53335 3 188 9.6E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0399 ba489599dc52ad47d345e06e1c4d0f56 202 Gene3D G3DSA:3.40.50.150 3 179 4.9E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_3650 18a89e4f2bd6faac0cdffa02eaac95c6 128 PANTHER PTHR39428 1 127 3.2E-45 T 19-04-2016 AMED_3650 18a89e4f2bd6faac0cdffa02eaac95c6 128 Pfam PF04075 Domain of unknown function (DUF385) 2 125 4.8E-43 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_3650 18a89e4f2bd6faac0cdffa02eaac95c6 128 PANTHER PTHR39428:SF1 1 127 3.2E-45 T 19-04-2016 AMED_3650 18a89e4f2bd6faac0cdffa02eaac95c6 128 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 16 124 3.5E-32 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_0780 295a1e0982c6093ef67b7aa51d3f7110 201 Gene3D G3DSA:1.20.1540.10 21 193 3.7E-19 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_0780 295a1e0982c6093ef67b7aa51d3f7110 201 SUPERFAMILY SSF144091 19 194 1.83E-20 T 19-04-2016 AMED_0780 295a1e0982c6093ef67b7aa51d3f7110 201 Pfam PF01694 Rhomboid family 57 192 3.8E-14 T 19-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMED_5498 dec651e5d8a42de8d6653254fe7e6934 159 Pfam PF07883 Cupin domain 40 96 6.1E-12 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_5498 dec651e5d8a42de8d6653254fe7e6934 159 SUPERFAMILY SSF51182 8 128 1.6E-22 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_5498 dec651e5d8a42de8d6653254fe7e6934 159 Gene3D G3DSA:2.60.120.10 9 127 1.1E-31 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5928 30c22dde8db5b651ba8425bb351d0e3a 169 Gene3D G3DSA:3.30.300.20 2 157 1.1E-43 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_5928 30c22dde8db5b651ba8425bb351d0e3a 169 PANTHER PTHR35368 1 169 5.8E-35 T 19-04-2016 AMED_5928 30c22dde8db5b651ba8425bb351d0e3a 169 Pfam PF02566 OsmC-like protein 61 164 1.0E-15 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_5928 30c22dde8db5b651ba8425bb351d0e3a 169 SUPERFAMILY SSF82784 8 166 6.67E-37 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_5928 30c22dde8db5b651ba8425bb351d0e3a 169 PANTHER PTHR35368:SF1 1 169 5.8E-35 T 19-04-2016 AMED_3521 05b62c941f040b72497eb0056576fb84 150 SUPERFAMILY SSF55961 3 147 4.71E-27 T 19-04-2016 AMED_3521 05b62c941f040b72497eb0056576fb84 150 Gene3D G3DSA:3.30.530.20 2 144 3.2E-12 T 19-04-2016 IPR023393 START-like domain AMED_3521 05b62c941f040b72497eb0056576fb84 150 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 3 144 2.4E-16 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_2902 6da445f2f63d4636a82635d514771ef8 198 Pfam PF06224 Winged helix DNA-binding domain 2 184 5.6E-35 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_2902 6da445f2f63d4636a82635d514771ef8 198 PANTHER PTHR38479 1 197 1.2E-60 T 19-04-2016 AMED_2902 6da445f2f63d4636a82635d514771ef8 198 PANTHER PTHR38479:SF2 1 197 1.2E-60 T 19-04-2016 AMED_8482 bc80d0dc7059709dada09e462a0fb8c8 489 Pfam PF00860 Permease family 32 443 2.3E-28 T 19-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_8482 bc80d0dc7059709dada09e462a0fb8c8 489 PANTHER PTHR11119 1 471 3.2E-110 T 19-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_8482 bc80d0dc7059709dada09e462a0fb8c8 489 PANTHER PTHR11119:SF9 1 471 3.2E-110 T 19-04-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 AMED_2442 ad8fd74a3b1749e64d9463f752584934 310 PANTHER PTHR30193:SF6 11 309 9.1E-93 T 19-04-2016 AMED_2442 ad8fd74a3b1749e64d9463f752584934 310 Gene3D G3DSA:1.10.3720.10 72 305 1.4E-56 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2442 ad8fd74a3b1749e64d9463f752584934 310 PANTHER PTHR30193 11 309 9.1E-93 T 19-04-2016 AMED_2442 ad8fd74a3b1749e64d9463f752584934 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 307 1.1E-16 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2442 ad8fd74a3b1749e64d9463f752584934 310 SUPERFAMILY SSF161098 65 296 1.57E-56 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7320 ff3ea6922edfd7a63892a4c3894ab499 92 Gene3D G3DSA:1.10.10.10 12 88 5.6E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3683 215c9a4df8bfc7b454087dd161e7764b 91 SMART SM00823 Phosphopantetheine attachment site 13 84 9.7E-4 T 19-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 AMED_3683 215c9a4df8bfc7b454087dd161e7764b 91 SUPERFAMILY SSF47336 7 84 2.49E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3683 215c9a4df8bfc7b454087dd161e7764b 91 Pfam PF00550 Phosphopantetheine attachment site 15 79 5.7E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_3683 215c9a4df8bfc7b454087dd161e7764b 91 Gene3D G3DSA:1.10.1200.10 3 85 3.5E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_1289 cffae53064d86c46d0f448b0f6d9975b 372 PANTHER PTHR21666 263 369 1.8E-23 T 19-04-2016 AMED_1289 cffae53064d86c46d0f448b0f6d9975b 372 PANTHER PTHR21666 217 246 1.8E-23 T 19-04-2016 AMED_1289 cffae53064d86c46d0f448b0f6d9975b 372 Pfam PF00877 NlpC/P60 family 272 365 1.3E-19 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_1289 cffae53064d86c46d0f448b0f6d9975b 372 Gene3D G3DSA:3.90.1720.10 254 370 6.6E-35 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_1289 cffae53064d86c46d0f448b0f6d9975b 372 SUPERFAMILY SSF54001 253 370 2.29E-32 T 19-04-2016 AMED_7199 94a3821e4906cd63b62fbaa3f373bd35 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 227 4.6E-45 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_7199 94a3821e4906cd63b62fbaa3f373bd35 264 Gene3D G3DSA:3.90.226.10 14 237 7.3E-62 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_7199 94a3821e4906cd63b62fbaa3f373bd35 264 PANTHER PTHR11941 15 228 5.3E-62 T 19-04-2016 AMED_7199 94a3821e4906cd63b62fbaa3f373bd35 264 SUPERFAMILY SSF52096 14 234 1.77E-62 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_9237 fe08dd0c5d9cee00b506be22d135b1db 162 Gene3D G3DSA:2.40.50.140 4 63 1.7E-4 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_5405 50b000d3186266c6b05511a90f260bae 277 PIRSF PIRSF006648 16 274 3.1E-30 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_5405 50b000d3186266c6b05511a90f260bae 277 PANTHER PTHR30294 28 272 4.5E-30 T 19-04-2016 AMED_5405 50b000d3186266c6b05511a90f260bae 277 Pfam PF01061 ABC-2 type transporter 28 232 9.0E-27 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_6339 baa24bf550eccec0552997c17b765a5b 94 Pfam PF04296 Protein of unknown function (DUF448) 4 63 1.4E-16 T 19-04-2016 IPR007393 Domain of unknown function DUF448 AMED_6339 baa24bf550eccec0552997c17b765a5b 94 PANTHER PTHR34215:SF1 3 63 2.9E-12 T 19-04-2016 AMED_6339 baa24bf550eccec0552997c17b765a5b 94 SUPERFAMILY SSF64376 3 58 1.96E-15 T 19-04-2016 IPR007393 Domain of unknown function DUF448 AMED_6339 baa24bf550eccec0552997c17b765a5b 94 Gene3D G3DSA:3.30.1230.10 4 55 9.7E-17 T 19-04-2016 IPR007393 Domain of unknown function DUF448 AMED_6339 baa24bf550eccec0552997c17b765a5b 94 PANTHER PTHR34215 3 63 2.9E-12 T 19-04-2016 AMED_5400 febe9907296c93edd9ea3b64f26023c6 351 SUPERFAMILY SSF140959 157 334 1.57E-26 T 19-04-2016 AMED_6131 1c5e7a0fd30a05864d40886d4a498151 237 SUPERFAMILY SSF52540 10 188 5.88E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6131 1c5e7a0fd30a05864d40886d4a498151 237 SMART SM00382 27 208 1.5E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_6131 1c5e7a0fd30a05864d40886d4a498151 237 Gene3D G3DSA:3.40.50.300 7 157 1.7E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5968 528a17b66c38baf8de4a058a46af9473 209 Gene3D G3DSA:3.30.1050.10 133 198 8.9E-4 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_5968 528a17b66c38baf8de4a058a46af9473 209 Gene3D G3DSA:1.10.10.10 5 103 2.0E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5968 528a17b66c38baf8de4a058a46af9473 209 SUPERFAMILY SSF55718 137 203 7.53E-9 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_5968 528a17b66c38baf8de4a058a46af9473 209 Pfam PF01638 HxlR-like helix-turn-helix 19 103 3.9E-22 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_5968 528a17b66c38baf8de4a058a46af9473 209 PANTHER PTHR33204:SF9 11 103 7.0E-34 T 19-04-2016 AMED_5968 528a17b66c38baf8de4a058a46af9473 209 SUPERFAMILY SSF46785 7 104 1.03E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5968 528a17b66c38baf8de4a058a46af9473 209 PANTHER PTHR33204 11 103 7.0E-34 T 19-04-2016 AMED_5968 528a17b66c38baf8de4a058a46af9473 209 Pfam PF02036 SCP-2 sterol transfer family 131 202 1.6E-7 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_9091 b8407c404cc4f83a68b7764d58ac9e9a 377 Pfam PF00691 OmpA family 268 350 1.1E-5 T 19-04-2016 IPR006665 OmpA-like domain AMED_9091 b8407c404cc4f83a68b7764d58ac9e9a 377 Gene3D G3DSA:3.30.1330.60 260 375 1.8E-9 T 19-04-2016 IPR006665 OmpA-like domain AMED_9091 b8407c404cc4f83a68b7764d58ac9e9a 377 SUPERFAMILY SSF103088 253 375 2.62E-8 T 19-04-2016 IPR006665 OmpA-like domain AMED_3122 d16fb58a64747902464a6cead30596bb 269 Pfam PF04972 BON domain 195 256 1.3E-5 T 19-04-2016 IPR007055 BON domain AMED_3122 d16fb58a64747902464a6cead30596bb 269 Pfam PF14907 Uncharacterised nucleotidyltransferase 6 173 3.5E-9 T 19-04-2016 AMED_3122 d16fb58a64747902464a6cead30596bb 269 SUPERFAMILY SSF81301 3 141 1.5E-26 T 19-04-2016 AMED_2138 adccea722eec1c299363c64a27b91b44 160 Gene3D G3DSA:1.10.10.60 106 145 5.7E-5 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8160 fb9f085d9eb18831e00bb686419ce066 369 Pfam PF00999 Sodium/hydrogen exchanger family 13 230 5.9E-9 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_3461 290a1ff13baa1943009c7dce7e46e710 171 SUPERFAMILY SSF56601 49 166 1.66E-19 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3461 290a1ff13baa1943009c7dce7e46e710 171 PANTHER PTHR35333:SF3 29 171 3.3E-30 T 19-04-2016 AMED_3461 290a1ff13baa1943009c7dce7e46e710 171 Gene3D G3DSA:3.40.710.10 52 168 5.0E-24 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3461 290a1ff13baa1943009c7dce7e46e710 171 Pfam PF13354 Beta-lactamase enzyme family 47 137 8.9E-19 T 19-04-2016 AMED_3461 290a1ff13baa1943009c7dce7e46e710 171 PANTHER PTHR35333 29 171 3.3E-30 T 19-04-2016 AMED_0355 198da3a854fd425476b154934dec7771 117 SUPERFAMILY SSF52309 16 111 7.32E-5 T 19-04-2016 AMED_4041 bbd16e1b1b465902dd15a4ec49b4f89e 460 SUPERFAMILY SSF56059 167 358 1.66E-21 T 19-04-2016 AMED_4041 bbd16e1b1b465902dd15a4ec49b4f89e 460 Gene3D G3DSA:3.30.470.20 164 354 4.2E-14 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_4041 bbd16e1b1b465902dd15a4ec49b4f89e 460 Pfam PF02222 ATP-grasp domain 201 349 5.5E-6 T 19-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 AMED_0342 4a21c6bb9a73d77f8e793e62ea79859c 71 Gene3D G3DSA:3.30.70.100 6 62 3.2E-14 T 19-04-2016 AMED_0342 4a21c6bb9a73d77f8e793e62ea79859c 71 SUPERFAMILY SSF55008 2 64 3.27E-12 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_0342 4a21c6bb9a73d77f8e793e62ea79859c 71 Pfam PF00403 Heavy-metal-associated domain 8 61 7.3E-10 T 19-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMED_5021 eebf0fe4312755a64e2698703798c2e3 367 Gene3D G3DSA:3.20.20.30 3 258 2.9E-102 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5021 eebf0fe4312755a64e2698703798c2e3 367 Gene3D G3DSA:3.20.20.30 296 366 2.9E-102 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5021 eebf0fe4312755a64e2698703798c2e3 367 SUPERFAMILY SSF51679 3 364 4.06E-91 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5021 eebf0fe4312755a64e2698703798c2e3 367 PANTHER PTHR30011 1 366 1.7E-129 T 19-04-2016 AMED_5021 eebf0fe4312755a64e2698703798c2e3 367 PANTHER PTHR30011:SF1 1 366 1.7E-129 T 19-04-2016 AMED_5021 eebf0fe4312755a64e2698703798c2e3 367 Pfam PF00296 Luciferase-like monooxygenase 4 334 2.7E-87 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5497 b7c26e8354447c4c3de2505be291499c 162 PANTHER PTHR26402:SF151 3 149 2.2E-55 T 19-04-2016 AMED_5497 b7c26e8354447c4c3de2505be291499c 162 SMART SM00448 3 118 6.2E-30 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5497 b7c26e8354447c4c3de2505be291499c 162 Gene3D G3DSA:3.40.50.2300 2 135 1.1E-34 T 19-04-2016 AMED_5497 b7c26e8354447c4c3de2505be291499c 162 SUPERFAMILY SSF52172 2 136 1.01E-31 T 19-04-2016 IPR011006 CheY-like superfamily AMED_5497 b7c26e8354447c4c3de2505be291499c 162 Pfam PF00072 Response regulator receiver domain 5 117 5.2E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_5497 b7c26e8354447c4c3de2505be291499c 162 PANTHER PTHR26402 3 149 2.2E-55 T 19-04-2016 AMED_1156 86efb8fda9148edee469a554f7f0580e 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 289 4.3E-19 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1156 86efb8fda9148edee469a554f7f0580e 296 SUPERFAMILY SSF161098 26 296 7.01E-72 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1156 86efb8fda9148edee469a554f7f0580e 296 PANTHER PTHR32243:SF12 22 296 4.8E-113 T 19-04-2016 AMED_1156 86efb8fda9148edee469a554f7f0580e 296 PANTHER PTHR32243 22 296 4.8E-113 T 19-04-2016 AMED_1156 86efb8fda9148edee469a554f7f0580e 296 Gene3D G3DSA:1.10.3720.10 21 283 7.8E-65 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2754 1ca4b0e31803a17c192252b42f381e2c 105 Gene3D G3DSA:1.10.8.50 50 103 1.6E-9 T 19-04-2016 AMED_2754 1ca4b0e31803a17c192252b42f381e2c 105 SUPERFAMILY SSF46946 55 103 2.56E-6 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_6486 e6c56a8c056d5133b8dad39465936b24 312 Pfam PF13581 Histidine kinase-like ATPase domain 196 308 2.5E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6486 e6c56a8c056d5133b8dad39465936b24 312 PANTHER PTHR35526 176 308 7.8E-19 T 19-04-2016 AMED_6486 e6c56a8c056d5133b8dad39465936b24 312 SUPERFAMILY SSF55874 215 310 3.56E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6486 e6c56a8c056d5133b8dad39465936b24 312 Gene3D G3DSA:3.30.565.10 201 311 6.7E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6486 e6c56a8c056d5133b8dad39465936b24 312 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 15 158 7.5E-32 T 19-04-2016 IPR025847 MEDS domain AMED_5653 f9e1c6cb750a30f08f5c108c94eb7af6 179 Gene3D G3DSA:3.90.1570.10 5 154 2.1E-28 T 19-04-2016 IPR012296 Nuclease, putative, TT1808 AMED_5653 f9e1c6cb750a30f08f5c108c94eb7af6 179 SUPERFAMILY SSF52980 4 160 2.84E-30 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMED_5653 f9e1c6cb750a30f08f5c108c94eb7af6 179 PANTHER PTHR34107 1 175 1.7E-17 T 19-04-2016 AMED_5653 f9e1c6cb750a30f08f5c108c94eb7af6 179 Pfam PF05685 Putative restriction endonuclease 17 164 4.2E-27 T 19-04-2016 IPR008538 Domain of unknown function DUF820 AMED_6147 f974eeff048c9ad32be530d396078115 174 Pfam PF11611 Domain of unknown function (DUF4352) 48 160 2.4E-8 T 19-04-2016 IPR029051 Domain of unknown function DUF4352 AMED_0428 b3c996a041c64dee45c2f76f50880a80 97 Pfam PF10724 Protein of unknown function (DUF2516) 3 94 4.3E-28 T 19-04-2016 IPR019662 Protein of unknown function DUF2516 AMED_3907 377c8a46f9ee37a8d9c804f8246a79b9 168 Pfam PF06897 Protein of unknown function (DUF1269) 61 159 1.9E-36 T 19-04-2016 IPR009200 Protein of unknown function DUF1269, membrane associated AMED_2094 57b1e292566814480c8cfdd25b142cb6 179 Pfam PF11774 Lsr2 2 71 3.9E-14 T 19-04-2016 IPR024412 Lsr2 AMED_2094 57b1e292566814480c8cfdd25b142cb6 179 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 54 5.0E-10 T 19-04-2016 IPR024412 Lsr2 AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 PANTHER PTHR11695:SF429 14 309 3.6E-18 T 19-04-2016 AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 SUPERFAMILY SSF51735 118 260 1.5E-19 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 Gene3D G3DSA:3.90.180.10 102 146 7.0E-6 T 19-04-2016 IPR011032 GroES-like AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 Gene3D G3DSA:3.90.180.10 3 83 5.9E-5 T 19-04-2016 IPR011032 GroES-like AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 Gene3D G3DSA:3.40.50.720 147 247 1.2E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 SUPERFAMILY SSF50129 3 152 4.72E-16 T 19-04-2016 IPR011032 GroES-like AMED_8352 76a6d48fcfe104a8a28d0b764aa180d4 320 PANTHER PTHR11695 14 309 3.6E-18 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMED_8950 860b4ab96f72d7c6e6a71347f78cb8f4 404 SUPERFAMILY SSF57997 74 189 7.85E-5 T 19-04-2016 AMED_8982 3654b8ce532e23341c94d6e2ade13a55 130 SUPERFAMILY SSF54593 12 122 2.01E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8982 3654b8ce532e23341c94d6e2ade13a55 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 116 7.8E-8 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_8982 3654b8ce532e23341c94d6e2ade13a55 130 Gene3D G3DSA:3.10.180.10 12 119 4.7E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3664 9b175f32d9b7ecc2130e4156c80be62d 232 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 67 8.8E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_3664 9b175f32d9b7ecc2130e4156c80be62d 232 PANTHER PTHR30055:SF78 5 149 1.1E-20 T 19-04-2016 AMED_3664 9b175f32d9b7ecc2130e4156c80be62d 232 SUPERFAMILY SSF46689 10 85 3.95E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_3664 9b175f32d9b7ecc2130e4156c80be62d 232 SUPERFAMILY SSF48498 96 225 1.87E-19 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3664 9b175f32d9b7ecc2130e4156c80be62d 232 PANTHER PTHR30055 5 149 1.1E-20 T 19-04-2016 AMED_3664 9b175f32d9b7ecc2130e4156c80be62d 232 Gene3D G3DSA:1.10.357.10 4 222 1.2E-36 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5852 4ac41c471c42e5eebe7104c663475e04 294 PANTHER PTHR24220 6 218 2.9E-69 T 19-04-2016 AMED_5852 4ac41c471c42e5eebe7104c663475e04 294 Gene3D G3DSA:3.40.50.300 2 220 4.3E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5852 4ac41c471c42e5eebe7104c663475e04 294 SUPERFAMILY SSF52540 3 219 1.09E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5852 4ac41c471c42e5eebe7104c663475e04 294 SMART SM00382 29 214 2.9E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_5852 4ac41c471c42e5eebe7104c663475e04 294 Pfam PF00005 ABC transporter 20 156 1.7E-24 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 14 123 28.519 T 19-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 18 120 9.5E-46 T 19-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 Pfam PF00237 Ribosomal protein L22p/L17e 22 120 2.2E-29 T 19-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 SUPERFAMILY SSF54843 12 123 4.06E-41 T 19-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 Gene3D G3DSA:3.90.470.10 16 123 1.9E-40 T 19-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 PANTHER PTHR13501 16 130 4.9E-44 T 19-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 AMED_0682 f314d849b951e092e8fd853ed2610d1a 139 ProSitePatterns PS00464 Ribosomal protein L22 signature. 96 120 - T 19-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_7360 027559d440b0325a626698fafa235a70 290 Pfam PF04203 Sortase family 85 206 1.2E-15 T 19-04-2016 IPR005754 Sortase family AMED_7360 027559d440b0325a626698fafa235a70 290 Gene3D G3DSA:2.40.260.10 81 192 2.7E-14 T 19-04-2016 IPR023365 Sortase domain AMED_7360 027559d440b0325a626698fafa235a70 290 SUPERFAMILY SSF63817 75 207 1.24E-15 T 19-04-2016 IPR023365 Sortase domain AMED_5664 c174789a3af22030f29049b4ab690e36 334 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 25 325 9.3E-73 T 19-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMED_5664 c174789a3af22030f29049b4ab690e36 334 Gene3D G3DSA:1.10.3720.10 26 328 2.3E-33 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5664 c174789a3af22030f29049b4ab690e36 334 SUPERFAMILY SSF161098 36 317 7.06E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5664 c174789a3af22030f29049b4ab690e36 334 PANTHER PTHR30425 10 162 6.0E-86 T 19-04-2016 AMED_5664 c174789a3af22030f29049b4ab690e36 334 PANTHER PTHR30425 178 333 6.0E-86 T 19-04-2016 AMED_5664 c174789a3af22030f29049b4ab690e36 334 PANTHER PTHR30425:SF1 10 162 6.0E-86 T 19-04-2016 AMED_5664 c174789a3af22030f29049b4ab690e36 334 PANTHER PTHR30425:SF1 178 333 6.0E-86 T 19-04-2016 AMED_5664 c174789a3af22030f29049b4ab690e36 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 321 1.6E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3072 8fc210151a0eab99ad538ff43dff5a2d 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 310 1.1E-22 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3072 8fc210151a0eab99ad538ff43dff5a2d 314 Gene3D G3DSA:1.10.3720.10 80 311 6.9E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3072 8fc210151a0eab99ad538ff43dff5a2d 314 PANTHER PTHR30406:SF2 1 313 1.6E-89 T 19-04-2016 AMED_3072 8fc210151a0eab99ad538ff43dff5a2d 314 SUPERFAMILY SSF161098 74 300 3.27E-62 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3072 8fc210151a0eab99ad538ff43dff5a2d 314 PANTHER PTHR30406 1 313 1.6E-89 T 19-04-2016 AMED_5511 04c11940235133fc6aa95775e0aa0492 91 SMART SM00345 1 52 2.9E-7 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5511 04c11940235133fc6aa95775e0aa0492 91 SUPERFAMILY SSF46785 2 67 7.55E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5511 04c11940235133fc6aa95775e0aa0492 91 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 42 2.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5511 04c11940235133fc6aa95775e0aa0492 91 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 12 26 2.6E-5 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5511 04c11940235133fc6aa95775e0aa0492 91 Pfam PF00392 Bacterial regulatory proteins, gntR family 2 52 4.5E-13 T 19-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMED_5511 04c11940235133fc6aa95775e0aa0492 91 Gene3D G3DSA:1.10.10.10 2 55 6.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_0784 16380900a6096f2aaf6d94b01ffc5998 429 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 331 426 7.4E-9 T 19-04-2016 IPR024425 Cell wall-active antibiotics response 4TMS YvqF AMED_0784 16380900a6096f2aaf6d94b01ffc5998 429 PANTHER PTHR33885:SF3 31 88 4.5E-13 T 19-04-2016 AMED_0784 16380900a6096f2aaf6d94b01ffc5998 429 Pfam PF04024 PspC domain 31 84 5.8E-11 T 19-04-2016 IPR007168 Phage shock protein, PspC, N-terminal AMED_0784 16380900a6096f2aaf6d94b01ffc5998 429 PANTHER PTHR33885 31 88 4.5E-13 T 19-04-2016 AMED_5496 b2cd1f98e12058aaa9ab20eb71b5a607 95 PANTHER PTHR24421 1 91 3.0E-20 T 19-04-2016 AMED_5496 b2cd1f98e12058aaa9ab20eb71b5a607 95 SUPERFAMILY SSF55874 2 90 2.26E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5496 b2cd1f98e12058aaa9ab20eb71b5a607 95 PANTHER PTHR24421:SF26 1 91 3.0E-20 T 19-04-2016 AMED_2606 baad9857f4bffb192e9f580d521dccbf 160 Pfam PF11292 Protein of unknown function (DUF3093) 14 157 2.1E-48 T 19-04-2016 IPR021443 Protein of unknown function DUF3093 AMED_0116 b23450fcb69c2b72bcf9687b07353e12 304 Gene3D G3DSA:3.40.50.150 50 190 6.2E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0116 b23450fcb69c2b72bcf9687b07353e12 304 SUPERFAMILY SSF53335 23 193 1.16E-20 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0116 b23450fcb69c2b72bcf9687b07353e12 304 Pfam PF05050 Methyltransferase FkbM domain 28 188 4.5E-21 T 19-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_0116 b23450fcb69c2b72bcf9687b07353e12 304 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 25 161 4.3E-19 T 19-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_0574 934b021a8f40939851fcdbe369cebefb 361 PANTHER PTHR30011:SF18 1 358 5.7E-58 T 19-04-2016 AMED_0574 934b021a8f40939851fcdbe369cebefb 361 SUPERFAMILY SSF51679 4 352 5.59E-83 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0574 934b021a8f40939851fcdbe369cebefb 361 Gene3D G3DSA:3.20.20.30 3 351 1.3E-99 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_0574 934b021a8f40939851fcdbe369cebefb 361 PANTHER PTHR30011 1 358 5.7E-58 T 19-04-2016 AMED_0574 934b021a8f40939851fcdbe369cebefb 361 Pfam PF00296 Luciferase-like monooxygenase 20 293 1.4E-30 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8004 b0b38e51bed176595c2ecca3c7fdc9bf 147 Gene3D G3DSA:3.40.50.1010 5 146 3.3E-8 T 19-04-2016 IPR029060 PIN domain-like AMED_8004 b0b38e51bed176595c2ecca3c7fdc9bf 147 Pfam PF01850 PIN domain 6 140 2.6E-9 T 19-04-2016 IPR002716 PIN domain AMED_8004 b0b38e51bed176595c2ecca3c7fdc9bf 147 SUPERFAMILY SSF88723 5 146 2.64E-11 T 19-04-2016 IPR029060 PIN domain-like AMED_8004 b0b38e51bed176595c2ecca3c7fdc9bf 147 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 5 146 10.865 T 19-04-2016 IPR022907 VapC family GO:0004540 AMED_6143 e3006ed2385304ba6ad9b7d9345550b0 322 PANTHER PTHR11795:SF371 6 319 5.4E-89 T 19-04-2016 AMED_6143 e3006ed2385304ba6ad9b7d9345550b0 322 PANTHER PTHR11795 6 319 5.4E-89 T 19-04-2016 AMED_6143 e3006ed2385304ba6ad9b7d9345550b0 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 14 305 6.9E-40 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_1429 dceb3758524ec05a6825b13c467f7f63 426 Gene3D G3DSA:1.25.10.10 258 420 3.9E-4 T 19-04-2016 IPR011989 Armadillo-like helical AMED_8458 6630153c8a32a6ef15a0a6534ea58568 446 PANTHER PTHR22935 11 347 5.8E-62 T 19-04-2016 AMED_8458 6630153c8a32a6ef15a0a6534ea58568 446 Gene3D G3DSA:3.40.710.10 22 327 1.4E-73 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8458 6630153c8a32a6ef15a0a6534ea58568 446 SUPERFAMILY SSF56601 13 313 2.05E-71 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8458 6630153c8a32a6ef15a0a6534ea58568 446 Pfam PF00144 Beta-lactamase 16 315 2.1E-59 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3109 2c9ba892d39bb402d6a0e99e17b55434 186 Pfam PF07336 Putative stress-induced transcription regulator 7 122 7.0E-17 T 19-04-2016 IPR010852 Putative stress-induced transcription regulator AMED_3109 2c9ba892d39bb402d6a0e99e17b55434 186 Gene3D G3DSA:1.10.3300.10 2 171 1.1E-38 T 19-04-2016 IPR023286 ABATE domain AMED_3109 2c9ba892d39bb402d6a0e99e17b55434 186 PANTHER PTHR35525 2 177 1.1E-27 T 19-04-2016 AMED_3109 2c9ba892d39bb402d6a0e99e17b55434 186 PANTHER PTHR35525:SF3 2 177 1.1E-27 T 19-04-2016 AMED_3109 2c9ba892d39bb402d6a0e99e17b55434 186 SUPERFAMILY SSF160904 2 169 7.72E-36 T 19-04-2016 AMED_3109 2c9ba892d39bb402d6a0e99e17b55434 186 Pfam PF11706 CGNR zinc finger 127 170 3.5E-17 T 19-04-2016 IPR021005 Zinc finger, CGNR AMED_5870 3246f395ac301fdcb31f9e4345afd0dd 271 SUPERFAMILY SSF51679 16 260 8.68E-32 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5870 3246f395ac301fdcb31f9e4345afd0dd 271 Pfam PF00296 Luciferase-like monooxygenase 16 200 7.5E-25 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5870 3246f395ac301fdcb31f9e4345afd0dd 271 Gene3D G3DSA:3.20.20.30 13 134 3.1E-21 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5870 3246f395ac301fdcb31f9e4345afd0dd 271 Gene3D G3DSA:3.20.20.30 138 262 5.7E-10 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5870 3246f395ac301fdcb31f9e4345afd0dd 271 PANTHER PTHR30011 15 200 2.2E-16 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 166 181 1.7E-39 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 1.7E-39 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 338 1.7E-39 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.7E-39 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 1.7E-39 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 354 1.7E-39 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 SUPERFAMILY SSF51905 2 187 3.31E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 SUPERFAMILY SSF51905 274 364 3.31E-53 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 Pfam PF01494 FAD binding domain 3 352 2.8E-57 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 Gene3D G3DSA:3.50.50.60 114 192 3.0E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 Gene3D G3DSA:3.50.50.60 2 73 3.0E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 Gene3D G3DSA:3.50.50.60 275 356 3.0E-48 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PANTHER PTHR13789 2 380 1.2E-72 T 19-04-2016 AMED_8152 38cfc203050503f5ed071068b5d2b592 498 PANTHER PTHR13789:SF90 2 380 1.2E-72 T 19-04-2016 AMED_3245 dacb89ced6fe6f6b6370fc01d0399dde 258 Pfam PF11350 Protein of unknown function (DUF3152) 50 254 1.3E-61 T 19-04-2016 IPR022603 Domain of unknown function DUF3152 AMED_3245 dacb89ced6fe6f6b6370fc01d0399dde 258 SUPERFAMILY SSF55486 49 226 2.94E-19 T 19-04-2016 AMED_4607 a214bd5f0e94141c467631d330af08ac 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 1.0E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4607 a214bd5f0e94141c467631d330af08ac 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 1.0E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4607 a214bd5f0e94141c467631d330af08ac 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 1.0E-6 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4607 a214bd5f0e94141c467631d330af08ac 268 Gene3D G3DSA:3.40.50.1820 8 260 1.9E-43 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4607 a214bd5f0e94141c467631d330af08ac 268 PANTHER PTHR10992 23 259 6.8E-38 T 19-04-2016 AMED_4607 a214bd5f0e94141c467631d330af08ac 268 Pfam PF00561 alpha/beta hydrolase fold 27 155 1.1E-21 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_4607 a214bd5f0e94141c467631d330af08ac 268 SUPERFAMILY SSF53474 6 258 5.0E-44 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7257 6e45e62d94d18c1aacf98b712d13fadb 414 PANTHER PTHR30061 1 409 7.4E-70 T 19-04-2016 AMED_7257 6e45e62d94d18c1aacf98b712d13fadb 414 Pfam PF13416 Bacterial extracellular solute-binding protein 51 348 1.5E-38 T 19-04-2016 AMED_7257 6e45e62d94d18c1aacf98b712d13fadb 414 SUPERFAMILY SSF53850 37 407 1.28E-76 T 19-04-2016 AMED_7257 6e45e62d94d18c1aacf98b712d13fadb 414 Gene3D G3DSA:3.40.190.10 161 345 5.8E-43 T 19-04-2016 AMED_7257 6e45e62d94d18c1aacf98b712d13fadb 414 Gene3D G3DSA:3.40.190.10 35 160 2.1E-21 T 19-04-2016 AMED_2614 288e2b7afe312ce07fa4df3c1a59bea4 678 PANTHER PTHR11785:SF125 28 488 1.0E-164 T 19-04-2016 AMED_2614 288e2b7afe312ce07fa4df3c1a59bea4 678 PANTHER PTHR11785 28 488 1.0E-164 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2614 288e2b7afe312ce07fa4df3c1a59bea4 678 Pfam PF13520 Amino acid permease 52 465 1.8E-24 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_3966 dc5454b13b93c718c6a1d92493a587c7 291 Gene3D G3DSA:2.40.40.10 102 194 6.7E-15 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_3966 dc5454b13b93c718c6a1d92493a587c7 291 SUPERFAMILY SSF50685 92 195 2.76E-25 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_3966 dc5454b13b93c718c6a1d92493a587c7 291 Pfam PF03330 Lytic transglycolase 99 190 1.3E-10 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMED_3966 dc5454b13b93c718c6a1d92493a587c7 291 SUPERFAMILY SSF49590 200 270 3.27E-5 T 19-04-2016 IPR007117 Expansin, cellulose-binding-like domain AMED_3966 dc5454b13b93c718c6a1d92493a587c7 291 PANTHER PTHR31836 95 288 1.1E-42 T 19-04-2016 AMED_9320 5fb16f1f93cab76f0642dbbe46107bb9 385 Gene3D G3DSA:1.10.287.1060 88 137 4.0E-4 T 19-04-2016 AMED_9320 5fb16f1f93cab76f0642dbbe46107bb9 385 SUPERFAMILY SSF140453 86 158 5.36E-7 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_2171 ffc99d90a4f0b471276561cbfdd641d4 150 Pfam PF00583 Acetyltransferase (GNAT) family 54 134 3.8E-9 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_2171 ffc99d90a4f0b471276561cbfdd641d4 150 SUPERFAMILY SSF55729 7 140 1.36E-16 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2171 ffc99d90a4f0b471276561cbfdd641d4 150 Gene3D G3DSA:3.40.630.30 3 140 1.6E-19 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4255 360b12bb4f0df3d5e2578b37cc5af831 216 SUPERFAMILY SSF53271 10 214 3.15E-42 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_4255 360b12bb4f0df3d5e2578b37cc5af831 216 Pfam PF00156 Phosphoribosyl transferase domain 15 202 8.0E-23 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMED_4255 360b12bb4f0df3d5e2578b37cc5af831 216 PANTHER PTHR31299 9 214 1.0E-62 T 19-04-2016 AMED_4255 360b12bb4f0df3d5e2578b37cc5af831 216 Gene3D G3DSA:3.40.50.2020 11 73 6.7E-38 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_4255 360b12bb4f0df3d5e2578b37cc5af831 216 Gene3D G3DSA:3.40.50.2020 109 210 6.7E-38 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_0702 eae02e498bfc402548c92031d6421157 73 Gene3D G3DSA:2.40.50.140 2 73 1.6E-39 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0702 eae02e498bfc402548c92031d6421157 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 72 2.9E-38 T 19-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMED_0702 eae02e498bfc402548c92031d6421157 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 2.2E-29 T 19-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMED_0702 eae02e498bfc402548c92031d6421157 73 PANTHER PTHR33370 1 73 7.2E-47 T 19-04-2016 AMED_0702 eae02e498bfc402548c92031d6421157 73 SUPERFAMILY SSF50249 4 72 3.26E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_0702 eae02e498bfc402548c92031d6421157 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 26.654 T 19-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMED_1271 68addb5cad6ec202383116f3b26a6881 287 SUPERFAMILY SSF53474 44 232 1.74E-21 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_1271 68addb5cad6ec202383116f3b26a6881 287 Pfam PF01674 Lipase (class 2) 50 227 1.7E-14 T 19-04-2016 IPR002918 Lipase EstA/Esterase EstB GO:0016787 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_1271 68addb5cad6ec202383116f3b26a6881 287 Gene3D G3DSA:3.40.50.1820 31 276 9.6E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0319 0dc6b823f3c428c3172a2d658c066cef 237 Pfam PF14325 Domain of unknown function (DUF4383) 18 141 6.8E-25 T 19-04-2016 IPR025492 Protein of unknown function DUF4383 AMED_6535 a08c252f125670c7956f9bd27839f6e7 270 Gene3D G3DSA:3.40.50.1980 1 134 4.1E-12 T 19-04-2016 AMED_6535 a08c252f125670c7956f9bd27839f6e7 270 SUPERFAMILY SSF53807 1 269 7.46E-36 T 19-04-2016 AMED_6535 a08c252f125670c7956f9bd27839f6e7 270 Gene3D G3DSA:3.40.50.1980 138 269 3.2E-21 T 19-04-2016 AMED_6535 a08c252f125670c7956f9bd27839f6e7 270 PANTHER PTHR30535 1 269 6.7E-27 T 19-04-2016 AMED_6535 a08c252f125670c7956f9bd27839f6e7 270 Pfam PF01497 Periplasmic binding protein 1 247 1.3E-26 T 19-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AMED_0353 a3138e481d74f7f984b09ccccde3d380 449 Pfam PF12307 Protein of unknown function (DUF3631) 260 444 1.8E-68 T 19-04-2016 IPR022081 Domain of unknown function DUF3631 AMED_5603 b03fc15f51a660f537f37499924c8720 189 Pfam PF06197 Protein of unknown function (DUF998) 2 180 5.9E-16 T 19-04-2016 IPR009339 Protein of unknown function DUF998 AMED_5212 b33530b3e7ec32474d8c2418e3d9c6f1 149 PANTHER PTHR35526 4 96 1.4E-12 T 19-04-2016 AMED_3460 d681364b5a8fbb838a99f666d0107282 461 Gene3D G3DSA:3.40.710.10 10 350 1.7E-75 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_3460 d681364b5a8fbb838a99f666d0107282 461 Pfam PF00144 Beta-lactamase 17 335 8.7E-65 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_3460 d681364b5a8fbb838a99f666d0107282 461 PANTHER PTHR22935 6 402 2.8E-70 T 19-04-2016 AMED_3460 d681364b5a8fbb838a99f666d0107282 461 SUPERFAMILY SSF56601 5 349 2.05E-79 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_2198 527d4a5907e6df3f5eb211a1f7f45b8e 136 Gene3D G3DSA:3.40.50.2300 4 130 9.0E-10 T 19-04-2016 AMED_2198 527d4a5907e6df3f5eb211a1f7f45b8e 136 SUPERFAMILY SSF52172 5 130 8.54E-9 T 19-04-2016 IPR011006 CheY-like superfamily AMED_3310 c949ded7724dbdd2a703b13c2ab2fe5e 126 Pfam PF05331 Protein of unknown function (DUF742) 12 126 3.9E-30 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_3310 c949ded7724dbdd2a703b13c2ab2fe5e 126 PANTHER PTHR36221 11 126 7.4E-25 T 19-04-2016 AMED_4091 801a3c2288a418b68d01813b4be868e0 250 Gene3D G3DSA:3.40.50.1820 2 248 7.9E-25 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4091 801a3c2288a418b68d01813b4be868e0 250 PANTHER PTHR10992 2 248 2.0E-15 T 19-04-2016 AMED_4091 801a3c2288a418b68d01813b4be868e0 250 SUPERFAMILY SSF53474 2 247 7.07E-27 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4091 801a3c2288a418b68d01813b4be868e0 250 Pfam PF12697 Alpha/beta hydrolase family 4 240 8.8E-13 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_5754 521d7cfe91951009911510397f462e57 285 Gene3D G3DSA:3.40.50.150 51 194 2.1E-18 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5754 521d7cfe91951009911510397f462e57 285 SUPERFAMILY SSF53335 6 283 1.99E-62 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5754 521d7cfe91951009911510397f462e57 285 PANTHER PTHR13600:SF12 1 277 6.0E-62 T 19-04-2016 AMED_5754 521d7cfe91951009911510397f462e57 285 PANTHER PTHR13600 1 277 6.0E-62 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_5754 521d7cfe91951009911510397f462e57 285 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 7 266 5.3E-77 T 19-04-2016 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_5754 521d7cfe91951009911510397f462e57 285 Pfam PF04072 Leucine carboxyl methyltransferase 11 188 3.4E-48 T 19-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- AMED_1754 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 Pfam PF13673 Acetyltransferase (GNAT) domain 44 139 1.4E-10 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_1754 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 SUPERFAMILY SSF55729 3 134 1.25E-24 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1754 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 Gene3D G3DSA:3.40.630.30 3 156 1.5E-43 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1754 2ef7cdd76c482fc11ff1e1b8f4081c0e 158 PANTHER PTHR23091 3 158 3.4E-14 T 19-04-2016 AMED_7530 ab0425f42ecc3a61e9d8f4366fb5d53e 231 Gene3D G3DSA:3.40.50.150 32 147 2.2E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7530 ab0425f42ecc3a61e9d8f4366fb5d53e 231 PANTHER PTHR10108 26 132 2.8E-18 T 19-04-2016 AMED_7530 ab0425f42ecc3a61e9d8f4366fb5d53e 231 SUPERFAMILY SSF53335 24 212 1.35E-25 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7530 ab0425f42ecc3a61e9d8f4366fb5d53e 231 Pfam PF08241 Methyltransferase domain 41 129 1.3E-15 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMED_1780 7e7f4ae3badf3a2ff87e9c4850065e30 283 PANTHER PTHR30188 7 283 1.7E-132 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_1780 7e7f4ae3badf3a2ff87e9c4850065e30 283 Pfam PF02405 Permease MlaE 66 270 2.8E-58 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_1780 7e7f4ae3badf3a2ff87e9c4850065e30 283 PANTHER PTHR30188:SF1 7 283 1.7E-132 T 19-04-2016 AMED_2542 d586729b0e7a2a331d7be3f0fae47616 262 Pfam PF13490 Putative zinc-finger 9 36 1.8E-8 T 19-04-2016 IPR027383 Putative zinc-finger AMED_0483 337984e85018f866786bab1198f34437 290 SUPERFAMILY SSF51735 2 288 4.89E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0483 337984e85018f866786bab1198f34437 290 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 177 3.3E-22 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_0483 337984e85018f866786bab1198f34437 290 PANTHER PTHR10366 1 288 4.6E-37 T 19-04-2016 AMED_0483 337984e85018f866786bab1198f34437 290 Gene3D G3DSA:3.40.50.720 1 280 3.0E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7253 1729f0ca977baf9b1399fed1511dcd4d 156 PANTHER PTHR28255 1 152 4.8E-28 T 19-04-2016 AMED_7253 1729f0ca977baf9b1399fed1511dcd4d 156 SUPERFAMILY SSF143744 12 150 6.41E-22 T 19-04-2016 AMED_7253 1729f0ca977baf9b1399fed1511dcd4d 156 PANTHER PTHR28255:SF1 1 152 4.8E-28 T 19-04-2016 AMED_7253 1729f0ca977baf9b1399fed1511dcd4d 156 Pfam PF03928 Haem-degrading 20 146 4.8E-27 T 19-04-2016 IPR005624 Haem-degrading AMED_7895 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.357.10 6 190 6.6E-32 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 PANTHER PTHR30055:SF33 1 236 3.9E-31 T 19-04-2016 AMED_7895 3e3567c82841491b1152f015e715f639 392 Pfam PF00440 Bacterial regulatory proteins, tetR family 218 263 4.3E-16 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 62 1.5E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.10.60 213 263 1.3E-20 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_7895 3e3567c82841491b1152f015e715f639 392 ProSitePatterns PS01081 TetR-type HTH domain signature. 229 260 - T 19-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMED_7895 3e3567c82841491b1152f015e715f639 392 SUPERFAMILY SSF46689 209 282 2.59E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 PANTHER PTHR30055 1 236 3.9E-31 T 19-04-2016 AMED_7895 3e3567c82841491b1152f015e715f639 392 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.9E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 SUPERFAMILY SSF46689 6 87 2.05E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7895 3e3567c82841491b1152f015e715f639 392 Gene3D G3DSA:1.10.357.10 264 365 4.8E-10 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_5000 a1a2eecd22fc94b0198db0e5e4931eb6 630 Pfam PF13203 Putative metallopeptidase domain 259 483 4.6E-26 T 19-04-2016 IPR025154 Putative metallopeptidase domain AMED_5000 a1a2eecd22fc94b0198db0e5e4931eb6 630 PANTHER PTHR38730 172 629 6.1E-66 T 19-04-2016 AMED_5000 a1a2eecd22fc94b0198db0e5e4931eb6 630 PANTHER PTHR38730:SF1 172 629 6.1E-66 T 19-04-2016 AMED_3307 2e51ebc69c93a617a3ce676bf33a109c 415 PANTHER PTHR36840 9 392 2.2E-22 T 19-04-2016 AMED_3307 2e51ebc69c93a617a3ce676bf33a109c 415 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 10 375 1.3E-70 T 19-04-2016 IPR010640 Low temperature requirement A AMED_3307 2e51ebc69c93a617a3ce676bf33a109c 415 PANTHER PTHR36840:SF1 9 392 2.2E-22 T 19-04-2016 AMED_4990 4a19275515a2015b7528908eb3663a0a 154 SUPERFAMILY SSF49879 26 143 1.47E-32 T 19-04-2016 IPR008984 SMAD/FHA domain GO:0005515 AMED_4990 4a19275515a2015b7528908eb3663a0a 154 SMART SM00240 72 122 2.8E-17 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_4990 4a19275515a2015b7528908eb3663a0a 154 Gene3D G3DSA:2.60.200.20 48 145 1.2E-30 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_4990 4a19275515a2015b7528908eb3663a0a 154 PANTHER PTHR15715 27 136 8.0E-27 T 19-04-2016 AMED_4990 4a19275515a2015b7528908eb3663a0a 154 Pfam PF00498 FHA domain 74 136 6.4E-19 T 19-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMED_5576 92f244edf33941efcc26121ea0709164 165 Gene3D G3DSA:3.40.630.30 20 151 1.4E-7 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_5576 92f244edf33941efcc26121ea0709164 165 Pfam PF00583 Acetyltransferase (GNAT) family 81 151 2.0E-4 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_5576 92f244edf33941efcc26121ea0709164 165 SUPERFAMILY SSF55729 19 151 6.89E-8 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6017 37557276f7c9bd4178e51a4d93645dac 473 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 28 457 1.4E-91 T 19-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AMED_6017 37557276f7c9bd4178e51a4d93645dac 473 PANTHER PTHR30618 17 471 3.4E-189 T 19-04-2016 AMED_6017 37557276f7c9bd4178e51a4d93645dac 473 PANTHER PTHR30618:SF6 17 471 3.4E-189 T 19-04-2016 AMED_1655 c32e3bcebd0dba7b3981918133de482c 260 SUPERFAMILY SSF55729 24 230 1.22E-40 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1655 c32e3bcebd0dba7b3981918133de482c 260 PANTHER PTHR37323 18 258 2.9E-84 T 19-04-2016 AMED_1655 c32e3bcebd0dba7b3981918133de482c 260 PANTHER PTHR37323:SF1 18 258 2.9E-84 T 19-04-2016 AMED_1655 c32e3bcebd0dba7b3981918133de482c 260 Pfam PF13444 Acetyltransferase (GNAT) domain 41 142 7.0E-34 T 19-04-2016 AMED_1655 c32e3bcebd0dba7b3981918133de482c 260 Gene3D G3DSA:3.40.630.30 29 225 4.2E-33 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_7060 753a1f59adcfb4252f613a1f9b082932 1017 Pfam PF04602 Mycobacterial cell wall arabinan synthesis protein 1 628 8.4E-224 T 19-04-2016 IPR007680 Arabinofuranosyltransferase, N-terminal GO:0052636|GO:0071766 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- AMED_7060 753a1f59adcfb4252f613a1f9b082932 1017 Gene3D G3DSA:2.60.120.610 7 179 2.7E-39 T 19-04-2016 IPR027451 Arabinofuranosyltransferase, domain 1 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- AMED_7060 753a1f59adcfb4252f613a1f9b082932 1017 Pfam PF14896 EmbC C-terminal domain 667 718 4.6E-7 T 19-04-2016 IPR032731 Arabinosyltransferase, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- AMED_7060 753a1f59adcfb4252f613a1f9b082932 1017 Pfam PF14896 EmbC C-terminal domain 749 1005 1.1E-50 T 19-04-2016 IPR032731 Arabinosyltransferase, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- AMED_6049 aceff8dcd2da84839df9920d2b371847 229 Gene3D G3DSA:1.25.40.290 135 228 1.5E-33 T 19-04-2016 AMED_6049 aceff8dcd2da84839df9920d2b371847 229 Pfam PF08713 DNA alkylation repair enzyme 11 228 1.3E-58 T 19-04-2016 IPR014825 DNA alkylation repair enzyme AMED_6049 aceff8dcd2da84839df9920d2b371847 229 SUPERFAMILY SSF48371 15 228 2.69E-46 T 19-04-2016 IPR016024 Armadillo-type fold GO:0005488 AMED_6049 aceff8dcd2da84839df9920d2b371847 229 PANTHER PTHR34070:SF1 5 229 6.2E-51 T 19-04-2016 AMED_6049 aceff8dcd2da84839df9920d2b371847 229 PANTHER PTHR34070 5 229 6.2E-51 T 19-04-2016 AMED_8506 09e18741051fbe733782d63737508cba 249 PANTHER PTHR13774:SF17 1 249 7.8E-90 T 19-04-2016 AMED_8506 09e18741051fbe733782d63737508cba 249 Pfam PF02567 Phenazine biosynthesis-like protein 6 245 5.4E-55 T 19-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- AMED_8506 09e18741051fbe733782d63737508cba 249 PANTHER PTHR13774 1 249 7.8E-90 T 19-04-2016 AMED_8506 09e18741051fbe733782d63737508cba 249 PIRSF PIRSF016184 1 249 2.0E-45 T 19-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- AMED_8506 09e18741051fbe733782d63737508cba 249 Gene3D G3DSA:3.10.310.10 1 117 2.6E-38 T 19-04-2016 AMED_8506 09e18741051fbe733782d63737508cba 249 Gene3D G3DSA:3.10.310.10 118 237 2.2E-36 T 19-04-2016 AMED_8506 09e18741051fbe733782d63737508cba 249 SUPERFAMILY SSF54506 1 248 1.28E-69 T 19-04-2016 AMED_8506 09e18741051fbe733782d63737508cba 249 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 3 88 1.8E-22 T 19-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- AMED_1034 27f7183a1197ab627edf9dd3125cea35 260 Pfam PF11350 Protein of unknown function (DUF3152) 61 226 2.9E-33 T 19-04-2016 IPR022603 Domain of unknown function DUF3152 AMED_1034 27f7183a1197ab627edf9dd3125cea35 260 SUPERFAMILY SSF55486 105 228 5.31E-14 T 19-04-2016 AMED_0427 ec4faffd92fbb6f40bdf1371f4b65c58 229 ProDom PD082580 HEPARIN-BINDING HEMAGGLUTININ ADHESIN GLYCOPROTEIN DIRECT VIRULENCE SEQUENCING CELL ADHESION HOMOLOG 60 136 5.0E-6 T 19-04-2016 IPR020340 Heparin-binding haemagglutinin, bacteria GO:0007155|GO:0008201|GO:0009405|GO:0009986 AMED_5048 fdf52638302fb5134e3b541aa0bcb388 261 SUPERFAMILY SSF52096 5 257 1.14E-56 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5048 fdf52638302fb5134e3b541aa0bcb388 261 Gene3D G3DSA:3.90.226.10 3 249 1.4E-54 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_5048 fdf52638302fb5134e3b541aa0bcb388 261 PANTHER PTHR11941 2 258 5.7E-48 T 19-04-2016 AMED_5048 fdf52638302fb5134e3b541aa0bcb388 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 249 3.6E-31 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_5805 56ac36ab64e77f4e4c67c7cce176c177 214 Pfam PF13546 DDE superfamily endonuclease 1 65 1.8E-9 T 19-04-2016 AMED_5805 56ac36ab64e77f4e4c67c7cce176c177 214 SUPERFAMILY SSF53098 141 207 3.87E-9 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7461 9867c896d59e5965f3f9d43e295247ae 246 Gene3D G3DSA:3.40.50.1110 23 221 1.7E-36 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7461 9867c896d59e5965f3f9d43e295247ae 246 PANTHER PTHR30383 31 224 7.0E-43 T 19-04-2016 AMED_7461 9867c896d59e5965f3f9d43e295247ae 246 PANTHER PTHR30383:SF9 31 224 7.0E-43 T 19-04-2016 AMED_7461 9867c896d59e5965f3f9d43e295247ae 246 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 211 6.9E-21 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7461 9867c896d59e5965f3f9d43e295247ae 246 SUPERFAMILY SSF52266 24 221 2.96E-34 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 Pfam PF07335 Fungal chitosanase of glycosyl hydrolase group 75 7 148 8.1E-26 T 19-04-2016 IPR009939 Fungal chitosanase KEGG: 00520+3.2.1.132 AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 Pfam PF00652 Ricin-type beta-trefoil lectin domain 162 282 1.6E-27 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 Gene3D G3DSA:2.80.10.50 156 284 1.2E-39 T 19-04-2016 AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 PANTHER PTHR42061 1 151 4.0E-37 T 19-04-2016 AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 PANTHER PTHR42061:SF1 1 151 4.0E-37 T 19-04-2016 AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 SMART SM00458 159 285 2.3E-26 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_8378 a40440fd6bd3ac64df4003cc05d74f1f 285 SUPERFAMILY SSF50370 160 284 1.44E-38 T 19-04-2016 IPR000772 Ricin B, lectin domain AMED_4939 8a6a7d25cb11bc2d579bcac56954fbf5 386 SUPERFAMILY SSF103473 3 372 4.71E-56 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4939 8a6a7d25cb11bc2d579bcac56954fbf5 386 PANTHER PTHR23501:SF4 1 383 4.3E-125 T 19-04-2016 AMED_4939 8a6a7d25cb11bc2d579bcac56954fbf5 386 PANTHER PTHR23501 1 383 4.3E-125 T 19-04-2016 AMED_4939 8a6a7d25cb11bc2d579bcac56954fbf5 386 Pfam PF07690 Major Facilitator Superfamily 9 319 3.0E-39 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_4939 8a6a7d25cb11bc2d579bcac56954fbf5 386 Gene3D G3DSA:1.20.1250.20 196 377 3.0E-10 T 19-04-2016 AMED_4939 8a6a7d25cb11bc2d579bcac56954fbf5 386 Gene3D G3DSA:1.20.1250.20 5 184 5.2E-28 T 19-04-2016 AMED_4772 ae680b62614fcbc3c09dbafb3445de1f 409 SUPERFAMILY SSF103473 3 389 1.1E-42 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4772 ae680b62614fcbc3c09dbafb3445de1f 409 Gene3D G3DSA:1.20.1250.20 5 183 9.1E-22 T 19-04-2016 AMED_4772 ae680b62614fcbc3c09dbafb3445de1f 409 Pfam PF05977 Transmembrane secretion effector 4 387 4.1E-24 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_4772 ae680b62614fcbc3c09dbafb3445de1f 409 Gene3D G3DSA:1.20.1250.20 208 389 7.6E-16 T 19-04-2016 AMED_4772 ae680b62614fcbc3c09dbafb3445de1f 409 PANTHER PTHR23513 4 387 8.0E-69 T 19-04-2016 AMED_2512 b7a72165968a9b143b220c273e250cbe 128 Gene3D G3DSA:3.10.129.10 3 127 2.1E-12 T 19-04-2016 IPR029069 HotDog domain AMED_2512 b7a72165968a9b143b220c273e250cbe 128 SUPERFAMILY SSF54637 5 120 3.91E-14 T 19-04-2016 IPR029069 HotDog domain AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PANTHER PTHR24291 16 455 1.0E-107 T 19-04-2016 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 42 61 1.3E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 252 269 1.3E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 272 298 1.3E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 397 420 1.3E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 387 397 1.3E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00463 E-class P450 group I signature 354 378 1.3E-24 T 19-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 390 399 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PANTHER PTHR24291:SF46 16 455 1.0E-107 T 19-04-2016 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 SUPERFAMILY SSF48264 12 449 2.1E-110 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 Pfam PF00067 Cytochrome P450 15 431 1.5E-82 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 388 397 5.0E-14 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 397 408 5.0E-14 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 315 326 5.0E-14 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 PRINTS PR00385 P450 superfamily signature 263 280 5.0E-14 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6869 b9df51d6a5eb03cc4d7ecb1bebe6112d 457 Gene3D G3DSA:1.10.630.10 14 450 1.5E-115 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6035 0bea5b9fd605099b4664e288ddeac31f 219 Pfam PF13761 Domain of unknown function (DUF4166) 16 195 9.0E-59 T 19-04-2016 IPR025311 Domain of unknown function DUF4166 AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 PANTHER PTHR10210:SF32 1 316 2.4E-124 T 19-04-2016 AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 SUPERFAMILY SSF53271 74 309 3.81E-43 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 Gene3D G3DSA:3.40.50.2020 165 290 1.3E-31 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 209 316 4.5E-18 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 10 316 3.0E-93 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 Gene3D G3DSA:3.40.50.2020 5 164 9.9E-60 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 PANTHER PTHR10210 1 316 2.4E-124 T 19-04-2016 AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 125 3.4E-39 T 19-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMED_0082 8311ba9d92013501d90a80e17f2ea057 316 SMART SM01400 9 125 9.8E-61 T 19-04-2016 AMED_8237 003b3b774981f7911a0dfb701a48ab6a 213 SUPERFAMILY SSF51735 2 210 9.9E-27 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8237 003b3b774981f7911a0dfb701a48ab6a 213 Pfam PF13460 NAD(P)H-binding 8 172 1.3E-15 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8237 003b3b774981f7911a0dfb701a48ab6a 213 PANTHER PTHR15020:SF29 3 213 1.6E-48 T 19-04-2016 AMED_8237 003b3b774981f7911a0dfb701a48ab6a 213 PANTHER PTHR15020 3 213 1.6E-48 T 19-04-2016 AMED_8237 003b3b774981f7911a0dfb701a48ab6a 213 Gene3D G3DSA:3.40.50.720 1 212 1.2E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 Pfam PF07690 Major Facilitator Superfamily 24 262 1.6E-27 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 PRINTS PR01035 Tetracycline resistance protein signature 143 165 4.0E-9 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 PRINTS PR01035 Tetracycline resistance protein signature 171 191 4.0E-9 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 PRINTS PR01035 Tetracycline resistance protein signature 29 45 4.0E-9 T 19-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 Gene3D G3DSA:1.20.1250.20 18 201 9.4E-29 T 19-04-2016 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 Gene3D G3DSA:1.20.1250.20 220 386 5.0E-13 T 19-04-2016 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 SUPERFAMILY SSF103473 15 389 4.05E-57 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 PANTHER PTHR23501 16 388 2.3E-129 T 19-04-2016 AMED_9279 4038ab6d75d43fe5bd772e9d57b68eae 405 PANTHER PTHR23501:SF72 16 388 2.3E-129 T 19-04-2016 AMED_0589 748b0d213cafcda46cf8903265b5715a 301 PANTHER PTHR37981 48 300 7.2E-30 T 19-04-2016 AMED_0589 748b0d213cafcda46cf8903265b5715a 301 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 50 288 1.3E-29 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0589 748b0d213cafcda46cf8903265b5715a 301 PANTHER PTHR37981:SF3 48 300 7.2E-30 T 19-04-2016 AMED_0589 748b0d213cafcda46cf8903265b5715a 301 Gene3D G3DSA:3.40.50.1110 44 299 6.8E-76 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_0589 748b0d213cafcda46cf8903265b5715a 301 SUPERFAMILY SSF52266 46 299 2.17E-62 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_7294 facd96420f717e34a37e064a9e2ecc52 134 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 112 3.0E-20 T 19-04-2016 IPR024412 Lsr2 AMED_7294 facd96420f717e34a37e064a9e2ecc52 134 Pfam PF11774 Lsr2 1 111 6.0E-41 T 19-04-2016 IPR024412 Lsr2 AMED_1260 540b19e07cb0872b4accfc7543ecd02c 224 Pfam PF13796 Putative sensor 16 199 9.5E-36 T 19-04-2016 IPR025828 Putative sensor domain AMED_5966 ca90ede9b1321fdc6416c1bc405f52b1 40 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 40 13.571 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5966 ca90ede9b1321fdc6416c1bc405f52b1 40 SUPERFAMILY SSF57840 1 40 8.5E-10 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_5966 ca90ede9b1321fdc6416c1bc405f52b1 40 Pfam PF00444 Ribosomal protein L36 1 40 1.8E-13 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_4004 d3ab616b7322be5a6af67781072304b1 574 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 143 288 4.5E-12 T 19-04-2016 AMED_0976 616ea926fb57dd1a213bca5a6836fd8b 325 Pfam PF14021 Protein of unknown function (DUF4237) 236 319 3.4E-23 T 19-04-2016 IPR025331 Protein of unknown function DUF4237 AMED_7237 7bd95c96e2865c074e675771e40fd1c2 322 Pfam PF13556 PucR C-terminal helix-turn-helix domain 256 312 1.9E-15 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_7237 7bd95c96e2865c074e675771e40fd1c2 322 PANTHER PTHR33744 35 322 1.1E-19 T 19-04-2016 AMED_3101 24e5a19eb37d137f2828ce013f9189a2 132 Pfam PF11774 Lsr2 2 108 3.0E-38 T 19-04-2016 IPR024412 Lsr2 AMED_3101 24e5a19eb37d137f2828ce013f9189a2 132 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 110 3.0E-20 T 19-04-2016 IPR024412 Lsr2 AMED_4749 eb0844efb9b45d8cedee4295fd7b1d55 168 SUPERFAMILY SSF52242 31 155 2.22E-19 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4749 eb0844efb9b45d8cedee4295fd7b1d55 168 Gene3D G3DSA:3.40.50.280 31 154 8.4E-18 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4749 eb0844efb9b45d8cedee4295fd7b1d55 168 Pfam PF02310 B12 binding domain 33 146 1.2E-14 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_0716 d8d294ff149f65499fd6fadee8dc56fd 358 SUPERFAMILY SSF140453 58 131 1.57E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0716 d8d294ff149f65499fd6fadee8dc56fd 358 Gene3D G3DSA:1.10.287.1060 60 130 8.2E-4 T 19-04-2016 AMED_4606 6752f78aaf25cf290784062b3585e77b 101 Pfam PF00550 Phosphopantetheine attachment site 24 83 4.3E-7 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4606 6752f78aaf25cf290784062b3585e77b 101 Gene3D G3DSA:1.10.1200.10 25 97 1.2E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4606 6752f78aaf25cf290784062b3585e77b 101 SUPERFAMILY SSF47336 21 97 2.88E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_7788 639e6b9e2a9bafb95976e86d6e4bac3d 143 Pfam PF04138 GtrA-like protein 10 126 2.7E-21 T 19-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 AMED_4318 5a8613e51dc43ecbd71e3737734efe90 421 SUPERFAMILY SSF50974 111 408 5.23E-39 T 19-04-2016 IPR011045 Nitrous oxide reductase, N-terminal AMED_4318 5a8613e51dc43ecbd71e3737734efe90 421 PANTHER PTHR13833 45 307 2.7E-16 T 19-04-2016 AMED_4318 5a8613e51dc43ecbd71e3737734efe90 421 Gene3D G3DSA:2.130.10.10 110 408 4.9E-36 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMED_9005 353b38f8eacb28032b8541d5c0ec7a6d 306 PANTHER PTHR30425:SF1 2 301 6.1E-106 T 19-04-2016 AMED_9005 353b38f8eacb28032b8541d5c0ec7a6d 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 298 7.9E-13 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9005 353b38f8eacb28032b8541d5c0ec7a6d 306 Gene3D G3DSA:1.10.3720.10 23 303 1.5E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9005 353b38f8eacb28032b8541d5c0ec7a6d 306 SUPERFAMILY SSF161098 28 297 2.4E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_9005 353b38f8eacb28032b8541d5c0ec7a6d 306 PANTHER PTHR30425 2 301 6.1E-106 T 19-04-2016 AMED_9005 353b38f8eacb28032b8541d5c0ec7a6d 306 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 5 303 1.6E-88 T 19-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMED_0664 d38d6534e1e83e6c51aa4b801195683f 235 SUPERFAMILY SSF55073 44 123 1.73E-5 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_3233 1e057ba4f7e653956df5c6b7e055206c 88 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 83 7.4E-24 T 19-04-2016 AMED_3233 1e057ba4f7e653956df5c6b7e055206c 88 SUPERFAMILY SSF54292 6 84 7.69E-16 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMED_8423 ce209f7bb0fa1d00856e5b786c7c53d7 396 Pfam PF12698 ABC-2 family transporter protein 33 373 4.5E-48 T 19-04-2016 AMED_8423 ce209f7bb0fa1d00856e5b786c7c53d7 396 PANTHER PTHR41312 8 388 1.5E-42 T 19-04-2016 AMED_6191 ce2684e8feb6a77d41384045d199b3e4 386 Pfam PF07730 Histidine kinase 175 242 6.3E-12 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_6191 ce2684e8feb6a77d41384045d199b3e4 386 Gene3D G3DSA:3.30.565.10 271 331 4.1E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6191 ce2684e8feb6a77d41384045d199b3e4 386 PANTHER PTHR24421 50 385 2.8E-42 T 19-04-2016 AMED_6191 ce2684e8feb6a77d41384045d199b3e4 386 PANTHER PTHR24421:SF26 50 385 2.8E-42 T 19-04-2016 AMED_6191 ce2684e8feb6a77d41384045d199b3e4 386 SUPERFAMILY SSF55874 252 372 1.74E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_2093 71bf1eb18af4de9a1579d4c2ba0ad786 243 SUPERFAMILY SSF55681 10 235 5.97E-45 T 19-04-2016 AMED_2093 71bf1eb18af4de9a1579d4c2ba0ad786 243 Gene3D G3DSA:3.90.1550.10 12 234 3.3E-45 T 19-04-2016 AMED_2093 71bf1eb18af4de9a1579d4c2ba0ad786 243 PANTHER PTHR12561 7 234 1.0E-39 T 19-04-2016 AMED_4235 e97b393824c6513739c7de22f03f5136 456 PANTHER PTHR11785:SF261 21 445 3.1E-71 T 19-04-2016 AMED_4235 e97b393824c6513739c7de22f03f5136 456 Pfam PF13520 Amino acid permease 34 413 4.9E-29 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_4235 e97b393824c6513739c7de22f03f5136 456 PIRSF PIRSF006060 7 450 4.6E-52 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_4235 e97b393824c6513739c7de22f03f5136 456 PANTHER PTHR11785 21 445 3.1E-71 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_4349 80c6c91b514d138ee64825b002c54997 273 SUPERFAMILY SSF53335 18 255 2.3E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4349 80c6c91b514d138ee64825b002c54997 273 PIRSF PIRSF017393 2 273 8.5E-84 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_4349 80c6c91b514d138ee64825b002c54997 273 Gene3D G3DSA:3.40.50.150 5 273 4.3E-98 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4349 80c6c91b514d138ee64825b002c54997 273 Pfam PF04672 S-adenosyl methyltransferase 8 273 8.7E-81 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_0012 53e451c24ce0c239b5e51d06fc644804 518 Pfam PF12307 Protein of unknown function (DUF3631) 259 443 2.2E-65 T 19-04-2016 IPR022081 Domain of unknown function DUF3631 AMED_2484 efad01120f6dd3bbdd8df19478258ec6 302 Gene3D G3DSA:1.10.530.10 214 288 3.6E-7 T 19-04-2016 AMED_2484 efad01120f6dd3bbdd8df19478258ec6 302 Gene3D G3DSA:1.10.530.10 148 174 3.6E-7 T 19-04-2016 AMED_2484 efad01120f6dd3bbdd8df19478258ec6 302 Pfam PF13406 Transglycosylase SLT domain 214 258 1.8E-6 T 19-04-2016 IPR031304 Transglycosylase SLT domain 2 AMED_2484 efad01120f6dd3bbdd8df19478258ec6 302 SUPERFAMILY SSF53955 119 292 6.86E-36 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 Gene3D G3DSA:3.90.850.10 58 248 7.2E-56 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 Gene3D G3DSA:3.90.850.10 282 310 7.2E-56 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 67 309 2.3E-53 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 PANTHER PTHR11820 282 313 1.6E-54 T 19-04-2016 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 PANTHER PTHR11820 42 249 1.6E-54 T 19-04-2016 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 PANTHER PTHR11820:SF6 282 313 1.6E-54 T 19-04-2016 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 PANTHER PTHR11820:SF6 42 249 1.6E-54 T 19-04-2016 AMED_5354 0979cc37f11ea11d4d1346411bf50450 313 SUPERFAMILY SSF56529 55 310 3.92E-55 T 19-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AMED_0249 e0c1f2e44cb3028f151aa809c6e736ff 93 Pfam PF10041 Uncharacterized conserved protein (DUF2277) 1 84 2.6E-33 T 19-04-2016 IPR018735 Protein of unknown function DUF2277 AMED_1394 8fa5f77e55bd5fa68d83c9098fba2c81 445 Pfam PF12730 ABC-2 family transporter protein 20 148 8.9E-7 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_4587 005e7163ae6be728d7f4d77c7f7b76c1 481 PANTHER PTHR11119:SF9 19 458 1.8E-103 T 19-04-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 AMED_4587 005e7163ae6be728d7f4d77c7f7b76c1 481 PANTHER PTHR11119 19 458 1.8E-103 T 19-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_4587 005e7163ae6be728d7f4d77c7f7b76c1 481 Pfam PF00860 Permease family 39 433 1.5E-27 T 19-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_9144 e06f0579d143aa305471db050f9b3c7b 131 Pfam PF10861 Protein of Unknown function (DUF2784) 4 110 1.4E-28 T 19-04-2016 IPR021218 Protein of unknown function DUF2784 AMED_4859 ead76acc0c14cabbe075f7912a42503e 861 Pfam PF02687 FtsX-like permease family 734 852 2.6E-6 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 PANTHER PTHR13812 1 300 7.0E-68 T 19-04-2016 AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 1 299 2.8E-43 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 PIRSF PIRSF001439 1 301 4.2E-58 T 19-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 PANTHER PTHR13812:SF19 1 300 7.0E-68 T 19-04-2016 AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 SUPERFAMILY SSF51735 1 298 4.09E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 Gene3D G3DSA:3.30.1780.10 2 125 7.6E-25 T 19-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal AMED_1481 b62183ec5a348097bfad7f57c63059f2 302 Gene3D G3DSA:3.40.50.720 126 282 3.3E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6459 0d6183e3b6c6263ca2437fbd97f121b0 140 Gene3D G3DSA:1.10.101.10 37 109 9.2E-11 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_6459 0d6183e3b6c6263ca2437fbd97f121b0 140 Pfam PF01471 Putative peptidoglycan binding domain 64 98 3.5E-6 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_6459 0d6183e3b6c6263ca2437fbd97f121b0 140 SUPERFAMILY SSF47090 38 107 9.81E-9 T 19-04-2016 IPR002477 Peptidoglycan binding-like AMED_3037 bd539283b2c69f4b96644d3e6ce8ff6e 425 PANTHER PTHR24423:SF549 234 424 5.0E-13 T 19-04-2016 AMED_3037 bd539283b2c69f4b96644d3e6ce8ff6e 425 PANTHER PTHR24423 234 424 5.0E-13 T 19-04-2016 AMED_3037 bd539283b2c69f4b96644d3e6ce8ff6e 425 Gene3D G3DSA:3.30.565.10 325 424 1.4E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3037 bd539283b2c69f4b96644d3e6ce8ff6e 425 SUPERFAMILY SSF55874 321 424 2.74E-13 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3037 bd539283b2c69f4b96644d3e6ce8ff6e 425 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 424 4.2E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5851 5b2f8c3f75022a5dd4de03f125d1bd03 323 Pfam PF12730 ABC-2 family transporter protein 71 206 1.9E-6 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 PANTHER PTHR11014:SF88 1 466 1.2E-158 T 19-04-2016 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 PANTHER PTHR11014 1 466 1.2E-158 T 19-04-2016 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 SUPERFAMILY SSF53187 378 463 5.97E-47 T 19-04-2016 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 SUPERFAMILY SSF53187 6 204 5.97E-47 T 19-04-2016 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 Pfam PF07687 Peptidase dimerisation domain 202 361 3.0E-12 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 Pfam PF01546 Peptidase family M20/M25/M40 90 462 1.2E-23 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 Gene3D G3DSA:3.30.70.360 215 369 1.1E-26 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 Gene3D G3DSA:3.40.630.10 402 463 1.3E-46 T 19-04-2016 AMED_9215 ff971a7545938b2dbfd617a4f1b4a6bd 467 Gene3D G3DSA:3.40.630.10 9 214 1.3E-46 T 19-04-2016 AMED_8701 3f921c54856e9a1735c9e38d260aef0b 316 Gene3D G3DSA:3.40.50.2000 156 298 4.7E-29 T 19-04-2016 AMED_8701 3f921c54856e9a1735c9e38d260aef0b 316 SUPERFAMILY SSF53756 1 310 3.71E-57 T 19-04-2016 AMED_8701 3f921c54856e9a1735c9e38d260aef0b 316 PANTHER PTHR11926 154 283 2.2E-18 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_8701 3f921c54856e9a1735c9e38d260aef0b 316 Gene3D G3DSA:3.40.50.2000 1 52 2.3E-8 T 19-04-2016 AMED_8701 3f921c54856e9a1735c9e38d260aef0b 316 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 149 278 5.5E-11 T 19-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 AMED_8701 3f921c54856e9a1735c9e38d260aef0b 316 PANTHER PTHR11926:SF16 154 283 2.2E-18 T 19-04-2016 AMED_4327 66b69c7215e5927116ff6a81038b17ec 123 SUPERFAMILY SSF56029 13 118 1.12E-22 T 19-04-2016 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 AMED_4327 66b69c7215e5927116ff6a81038b17ec 123 Gene3D G3DSA:3.90.56.10 18 107 1.3E-21 T 19-04-2016 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 AMED_4327 66b69c7215e5927116ff6a81038b17ec 123 Pfam PF02406 MmoB/DmpM family 19 105 4.4E-24 T 19-04-2016 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 AMED_1364 245eec81db8ba1104d0e5d28f111562a 394 PANTHER PTHR38165:SF2 1 394 1.1E-207 T 19-04-2016 AMED_1364 245eec81db8ba1104d0e5d28f111562a 394 PANTHER PTHR38165 1 394 1.1E-207 T 19-04-2016 AMED_1364 245eec81db8ba1104d0e5d28f111562a 394 Pfam PF16483 Beta-1,3-glucanase 34 390 4.9E-102 T 19-04-2016 IPR032477 Beta-1,3-glucanase, N-terminal KEGG: 00500+3.2.1.39 AMED_4479 0058f0eb4190edee8e1a3dea4b4ca712 147 Pfam PF04075 Domain of unknown function (DUF385) 30 99 6.4E-8 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_4479 0058f0eb4190edee8e1a3dea4b4ca712 147 Gene3D G3DSA:2.30.110.10 36 141 9.6E-6 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4479 0058f0eb4190edee8e1a3dea4b4ca712 147 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 30 110 4.4E-13 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_6951 1b3fe466d58725b9353d1f670cbc64ed 412 PANTHER PTHR33744 287 388 2.8E-13 T 19-04-2016 AMED_6951 1b3fe466d58725b9353d1f670cbc64ed 412 Pfam PF13556 PucR C-terminal helix-turn-helix domain 346 395 5.9E-18 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_6951 1b3fe466d58725b9353d1f670cbc64ed 412 PANTHER PTHR33744:SF4 287 388 2.8E-13 T 19-04-2016 AMED_7503 9d64b475428a6b3763fb81806512a606 358 SUPERFAMILY SSF51735 5 144 9.25E-11 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_7503 9d64b475428a6b3763fb81806512a606 358 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 5 66 6.1E-8 T 19-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMED_7503 9d64b475428a6b3763fb81806512a606 358 Gene3D G3DSA:3.40.50.720 1 209 2.3E-23 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 Pfam PF00174 Oxidoreductase molybdopterin binding domain 241 369 1.2E-22 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 PANTHER PTHR19372 52 369 4.6E-39 T 19-04-2016 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 PANTHER PTHR19372:SF2 52 369 4.6E-39 T 19-04-2016 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 325 341 7.7E-7 T 19-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 358 371 7.7E-7 T 19-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 277 292 7.7E-7 T 19-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 PRINTS PR00407 Eukaryotic molybdopterin domain signature 342 355 7.7E-7 T 19-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 Gene3D G3DSA:3.90.420.10 240 369 1.0E-29 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 SUPERFAMILY SSF81342 28 158 6.98E-6 T 19-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 AMED_8327 5bb25d86a61e809c426be93a9836ddb7 371 SUPERFAMILY SSF56524 237 370 5.1E-31 T 19-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 AMED_6553 bae79d1f14fbe8d690846e3181512418 146 PANTHER PTHR33797 1 120 3.1E-13 T 19-04-2016 AMED_6553 bae79d1f14fbe8d690846e3181512418 146 Pfam PF02566 OsmC-like protein 38 121 8.3E-9 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_6553 bae79d1f14fbe8d690846e3181512418 146 SUPERFAMILY SSF82784 4 121 1.96E-16 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_6553 bae79d1f14fbe8d690846e3181512418 146 Gene3D G3DSA:3.30.300.20 10 121 2.7E-14 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_5783 6004a2b24f3e931cc81e95dd941b6c92 143 Pfam PF13546 DDE superfamily endonuclease 3 122 1.7E-43 T 19-04-2016 AMED_5783 6004a2b24f3e931cc81e95dd941b6c92 143 PANTHER PTHR33627:SF1 3 120 2.0E-29 T 19-04-2016 AMED_5783 6004a2b24f3e931cc81e95dd941b6c92 143 PANTHER PTHR33627 3 120 2.0E-29 T 19-04-2016 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 342 351 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 SUPERFAMILY SSF48264 9 400 1.31E-80 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 340 349 1.7E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 349 360 1.7E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 238 255 1.7E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00385 P450 superfamily signature 273 284 1.7E-5 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PANTHER PTHR11712 7 400 1.9E-80 T 19-04-2016 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 96 107 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 193 215 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 349 360 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 160 175 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 273 284 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 290 317 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 318 333 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 143 159 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 PRINTS PR00359 B-class P450 signature 340 349 3.8E-43 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 Gene3D G3DSA:1.10.630.10 8 400 1.9E-100 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_6381 9f4b3cbe884eb083ea2b8bf51ea993c5 400 Pfam PF00067 Cytochrome P450 183 369 1.6E-18 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_1144 953919cda1036424a02209d56e9b531a 338 PANTHER PTHR35337 4 338 1.3E-43 T 19-04-2016 AMED_1144 953919cda1036424a02209d56e9b531a 338 Pfam PF01944 Stage II sporulation protein M 113 286 2.2E-33 T 19-04-2016 IPR002798 Stage II sporulation protein M-like AMED_6283 c684a2d579fed7840f2d420b325f6fbf 213 PANTHER PTHR14269 30 203 3.6E-36 T 19-04-2016 AMED_6283 c684a2d579fed7840f2d420b325f6fbf 213 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 79 101 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_6283 c684a2d579fed7840f2d420b325f6fbf 213 Pfam PF01066 CDP-alcohol phosphatidyltransferase 31 101 6.5E-16 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMED_6283 c684a2d579fed7840f2d420b325f6fbf 213 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 31 200 8.9E-38 T 19-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 AMED_6283 c684a2d579fed7840f2d420b325f6fbf 213 PIRSF PIRSF000847 28 210 3.0E-47 T 19-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 SUPERFAMILY SSF55874 471 668 5.24E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 PRINTS PR00775 90kDa heat shock protein signature 494 516 1.8E-8 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 PRINTS PR00775 90kDa heat shock protein signature 587 609 1.8E-8 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 PRINTS PR00775 90kDa heat shock protein signature 538 555 1.8E-8 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 497 611 1.3E-9 T 19-04-2016 AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 PANTHER PTHR11528 492 612 5.7E-20 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 PANTHER PTHR11528:SF26 492 612 5.7E-20 T 19-04-2016 AMED_6663 5ffab2d043714e82cae57c68709fe984 1249 Gene3D G3DSA:3.30.565.10 473 668 3.7E-27 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6822 2c379d45e3af1e20cda11d74b63c51cd 127 PANTHER PTHR10681 7 125 3.6E-25 T 19-04-2016 AMED_6822 2c379d45e3af1e20cda11d74b63c51cd 127 SUPERFAMILY SSF46458 6 125 6.99E-37 T 19-04-2016 IPR009050 Globin-like AMED_6822 2c379d45e3af1e20cda11d74b63c51cd 127 Pfam PF01152 Bacterial-like globin 6 123 6.5E-35 T 19-04-2016 IPR001486 Truncated hemoglobin GO:0019825 AMED_6822 2c379d45e3af1e20cda11d74b63c51cd 127 Gene3D G3DSA:1.10.490.10 5 125 2.5E-43 T 19-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMED_7062 a636744d03da699805e69dd07b1a7e2c 207 PANTHER PTHR32439 2 202 1.3E-70 T 19-04-2016 AMED_7062 a636744d03da699805e69dd07b1a7e2c 207 Pfam PF02570 Precorrin-8X methylmutase 10 204 1.4E-70 T 19-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 AMED_7062 a636744d03da699805e69dd07b1a7e2c 207 SUPERFAMILY SSF63965 2 204 7.98E-73 T 19-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 AMED_7062 a636744d03da699805e69dd07b1a7e2c 207 Gene3D G3DSA:3.40.50.10230 2 203 1.2E-77 T 19-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 AMED_5842 4c957be2215fc47d92b752b4ce1ec9d6 244 PANTHER PTHR40117 6 244 1.8E-25 T 19-04-2016 AMED_5842 4c957be2215fc47d92b752b4ce1ec9d6 244 Gene3D G3DSA:3.20.20.150 5 240 1.2E-44 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5842 4c957be2215fc47d92b752b4ce1ec9d6 244 Pfam PF01261 Xylose isomerase-like TIM barrel 72 201 1.7E-17 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_5842 4c957be2215fc47d92b752b4ce1ec9d6 244 SUPERFAMILY SSF51658 8 239 1.08E-32 T 19-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain AMED_2499 de50603b05f1bb46a38352e5d730f458 231 SUPERFAMILY SSF53335 9 181 3.35E-35 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2499 de50603b05f1bb46a38352e5d730f458 231 Gene3D G3DSA:3.40.50.150 23 187 8.5E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2499 de50603b05f1bb46a38352e5d730f458 231 PANTHER PTHR10108 45 231 6.7E-45 T 19-04-2016 AMED_2499 de50603b05f1bb46a38352e5d730f458 231 Pfam PF13649 Methyltransferase domain 46 139 3.3E-20 T 19-04-2016 AMED_2499 de50603b05f1bb46a38352e5d730f458 231 PANTHER PTHR10108:SF918 45 231 6.7E-45 T 19-04-2016 AMED_7175 b9b5aee7aa7d0f7dab9252365856aa3a 62 Pfam PF13459 4Fe-4S single cluster domain 3 60 4.9E-14 T 19-04-2016 AMED_7175 b9b5aee7aa7d0f7dab9252365856aa3a 62 SUPERFAMILY SSF54862 2 60 3.05E-10 T 19-04-2016 AMED_7175 b9b5aee7aa7d0f7dab9252365856aa3a 62 Gene3D G3DSA:3.30.70.20 2 60 1.1E-15 T 19-04-2016 AMED_7175 b9b5aee7aa7d0f7dab9252365856aa3a 62 PANTHER PTHR36923 1 60 1.9E-16 T 19-04-2016 AMED_2959 ba42c6de453a5536c5eb62e284d7410d 91 Pfam PF02325 YGGT family 7 87 1.4E-13 T 19-04-2016 IPR003425 CCB3/YggT GO:0016020 AMED_4611 f6b45679a8447649a1835cc31808560c 278 Gene3D G3DSA:3.20.20.140 5 267 8.9E-20 T 19-04-2016 AMED_4611 f6b45679a8447649a1835cc31808560c 278 SUPERFAMILY SSF89550 78 268 2.09E-27 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_4611 f6b45679a8447649a1835cc31808560c 278 SUPERFAMILY SSF89550 5 48 2.09E-27 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMED_4611 f6b45679a8447649a1835cc31808560c 278 PANTHER PTHR21039 4 268 9.6E-27 T 19-04-2016 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15|UniPathway: UPA00031 AMED_4611 f6b45679a8447649a1835cc31808560c 278 Pfam PF02811 PHP domain 6 104 6.5E-7 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMED_2744 f022d1949cca14741503c14577ee5a69 162 SMART SM00530 11 68 1.3E-5 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2744 f022d1949cca14741503c14577ee5a69 162 SUPERFAMILY SSF47413 4 71 1.38E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2744 f022d1949cca14741503c14577ee5a69 162 Pfam PF01381 Helix-turn-helix 13 68 1.7E-8 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_2744 f022d1949cca14741503c14577ee5a69 162 Gene3D G3DSA:1.10.260.40 3 73 1.6E-11 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_5163 076b095221f57af8736a7419b43ed135 156 SUPERFAMILY SSF55874 64 148 6.85E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6737 9596487e9802f57f56c7c1da41029c03 306 Pfam PF13581 Histidine kinase-like ATPase domain 192 302 1.5E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6737 9596487e9802f57f56c7c1da41029c03 306 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 9 152 1.1E-28 T 19-04-2016 IPR025847 MEDS domain AMED_6737 9596487e9802f57f56c7c1da41029c03 306 SUPERFAMILY SSF55874 215 300 2.05E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6023 2dc7d4910d74187a3dcaf072e88df0b6 391 Pfam PF06889 Protein of unknown function (DUF1266) 186 382 4.1E-35 T 19-04-2016 IPR009677 Protein of unknown function DUF1266 AMED_6235 edc29ba13f6028027a9c529ab7aac443 464 Gene3D G3DSA:3.30.470.20 138 320 9.5E-8 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMED_6235 edc29ba13f6028027a9c529ab7aac443 464 SUPERFAMILY SSF56059 139 320 8.39E-15 T 19-04-2016 AMED_4045 3bd2c8831c68dfcae16b2df2a8ed57da 79 Pfam PF00550 Phosphopantetheine attachment site 6 60 3.0E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4045 3bd2c8831c68dfcae16b2df2a8ed57da 79 SUPERFAMILY SSF47336 3 76 4.71E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4045 3bd2c8831c68dfcae16b2df2a8ed57da 79 Gene3D G3DSA:1.10.1200.10 3 75 6.9E-16 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 PANTHER PTHR30290 37 540 1.6E-80 T 19-04-2016 AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 Gene3D G3DSA:3.10.105.10 281 495 1.7E-39 T 19-04-2016 AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 Gene3D G3DSA:3.40.190.10 180 280 2.0E-25 T 19-04-2016 AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 430 2.6E-62 T 19-04-2016 IPR000914 Solute-binding protein family 5 domain AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 PIRSF PIRSF002741 30 500 1.4E-68 T 19-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 SUPERFAMILY SSF53850 21 518 5.52E-90 T 19-04-2016 AMED_8374 039f0c44f38e56cb1de1c8faf6ac86eb 540 Gene3D G3DSA:3.90.76.10 35 179 5.2E-28 T 19-04-2016 AMED_1631 f90c134dfb49db2d33aededf666b1e4c 320 SUPERFAMILY SSF53590 3 315 7.72E-87 T 19-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AMED_1631 f90c134dfb49db2d33aededf666b1e4c 320 Gene3D G3DSA:3.90.245.10 3 316 6.1E-98 T 19-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AMED_1631 f90c134dfb49db2d33aededf666b1e4c 320 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 305 6.9E-72 T 19-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AMED_1631 f90c134dfb49db2d33aededf666b1e4c 320 PANTHER PTHR12304 1 315 1.3E-88 T 19-04-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase AMED_0904 8c445d8c15e5c153cab7b3d24a532188 144 SUPERFAMILY SSF47413 45 84 2.89E-5 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_0904 8c445d8c15e5c153cab7b3d24a532188 144 Gene3D G3DSA:1.10.260.40 40 112 5.7E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_3119 ba477d6dca8ae1cd0a0b669d93a76772 275 SMART SM00422 12 80 0.0013 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_3119 ba477d6dca8ae1cd0a0b669d93a76772 275 Gene3D G3DSA:1.10.1660.10 13 84 1.1E-9 T 19-04-2016 AMED_3119 ba477d6dca8ae1cd0a0b669d93a76772 275 SUPERFAMILY SSF46955 12 79 1.47E-10 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_3119 ba477d6dca8ae1cd0a0b669d93a76772 275 Pfam PF13411 MerR HTH family regulatory protein 13 74 3.6E-13 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_5024 1a4f8fabd56e4d31592b9774c6388ee0 272 Gene3D G3DSA:1.10.3720.10 72 267 1.8E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5024 1a4f8fabd56e4d31592b9774c6388ee0 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 267 7.4E-28 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5024 1a4f8fabd56e4d31592b9774c6388ee0 272 PANTHER PTHR30151 29 270 2.7E-88 T 19-04-2016 AMED_5024 1a4f8fabd56e4d31592b9774c6388ee0 272 SUPERFAMILY SSF161098 73 260 2.75E-34 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5024 1a4f8fabd56e4d31592b9774c6388ee0 272 PANTHER PTHR30151:SF22 29 270 2.7E-88 T 19-04-2016 AMED_7458 a843475d2df94009f330fce7ed686e2e 361 PANTHER PTHR10272 19 340 2.3E-45 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_7458 a843475d2df94009f330fce7ed686e2e 361 SUPERFAMILY SSF53474 55 63 8.25E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7458 a843475d2df94009f330fce7ed686e2e 361 SUPERFAMILY SSF53474 187 344 8.25E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7458 a843475d2df94009f330fce7ed686e2e 361 SUPERFAMILY SSF53474 108 160 8.25E-23 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7458 a843475d2df94009f330fce7ed686e2e 361 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 206 338 6.4E-5 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_7458 a843475d2df94009f330fce7ed686e2e 361 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 21 158 6.5E-7 T 19-04-2016 IPR005065 Platelet-activating factor acetylhydrolase GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AMED_7458 a843475d2df94009f330fce7ed686e2e 361 Gene3D G3DSA:3.40.50.1820 115 358 3.2E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7458 a843475d2df94009f330fce7ed686e2e 361 Gene3D G3DSA:3.40.50.1820 13 68 3.2E-50 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_9365 c42b5b5c067df1beb77504e050c5c225 114 SMART SM01234 30 97 1.4E-38 T 19-04-2016 IPR002696 Putative membrane protein insertion efficiency factor AMED_9365 c42b5b5c067df1beb77504e050c5c225 114 Pfam PF01809 Haemolytic domain 33 97 1.4E-25 T 19-04-2016 IPR002696 Putative membrane protein insertion efficiency factor AMED_9365 c42b5b5c067df1beb77504e050c5c225 114 PANTHER PTHR33383 32 102 5.4E-34 T 19-04-2016 AMED_9365 c42b5b5c067df1beb77504e050c5c225 114 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 30 98 23.293 T 19-04-2016 IPR002696 Putative membrane protein insertion efficiency factor AMED_9365 c42b5b5c067df1beb77504e050c5c225 114 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 45 97 1.0E-15 T 19-04-2016 IPR002696 Putative membrane protein insertion efficiency factor AMED_9365 c42b5b5c067df1beb77504e050c5c225 114 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 35 100 2.2E-23 T 19-04-2016 IPR002696 Putative membrane protein insertion efficiency factor AMED_8549 432238ae9cd86e3aedb15a3cf039e88d 253 Pfam PF14062 Domain of unknown function (DUF4253) 145 252 7.9E-29 T 19-04-2016 IPR025349 Domain of unknown function DUF4253 AMED_0499 e6fd30f6d8f1f62bac2f65049b982a0e 322 PANTHER PTHR30071 73 322 8.1E-71 T 19-04-2016 AMED_0499 e6fd30f6d8f1f62bac2f65049b982a0e 322 PANTHER PTHR30071:SF5 73 322 8.1E-71 T 19-04-2016 AMED_0499 e6fd30f6d8f1f62bac2f65049b982a0e 322 Pfam PF01578 Cytochrome C assembly protein 108 316 1.2E-44 T 19-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMED_0499 e6fd30f6d8f1f62bac2f65049b982a0e 322 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 85 319 9.6E-71 T 19-04-2016 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 AMED_0307 4fb5a2a7a0eb76f23083d49b97d214fb 149 Gene3D G3DSA:3.30.530.20 8 147 5.5E-12 T 19-04-2016 IPR023393 START-like domain AMED_0307 4fb5a2a7a0eb76f23083d49b97d214fb 149 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 8 146 9.2E-20 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_0307 4fb5a2a7a0eb76f23083d49b97d214fb 149 SUPERFAMILY SSF55961 7 145 4.72E-18 T 19-04-2016 AMED_5019 9a13eb55bf2a5f6da7e16b0149da4179 279 Pfam PF14344 Domain of unknown function (DUF4397) 39 158 2.0E-19 T 19-04-2016 IPR025510 Domain of unknown function DUF4397 AMED_7444 675a1baf86ec0b042f5655c3d3eafbe0 136 Gene3D G3DSA:3.30.530.20 8 134 1.7E-30 T 19-04-2016 IPR023393 START-like domain AMED_7444 675a1baf86ec0b042f5655c3d3eafbe0 136 SUPERFAMILY SSF55961 11 134 6.66E-17 T 19-04-2016 AMED_7444 675a1baf86ec0b042f5655c3d3eafbe0 136 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 11 81 4.9E-7 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_6008 b4d64913caf793a97f769c74c676dfe4 300 PANTHER PTHR33969:SF2 23 296 3.1E-68 T 19-04-2016 AMED_6008 b4d64913caf793a97f769c74c676dfe4 300 PANTHER PTHR33969 23 296 3.1E-68 T 19-04-2016 AMED_6008 b4d64913caf793a97f769c74c676dfe4 300 Pfam PF02616 Segregation and condensation protein ScpA 55 275 1.4E-59 T 19-04-2016 IPR003768 Segregation and condensation protein A AMED_7588 ae64679292276d4040783cb9e89108ba 385 Pfam PF09375 Imelysin 143 372 1.2E-17 T 19-04-2016 AMED_7588 ae64679292276d4040783cb9e89108ba 385 PANTHER PTHR39192 5 382 4.1E-32 T 19-04-2016 AMED_6308 6b9fa89cdde825ea9aeb6e8a45f7a518 404 PANTHER PTHR30528 1 397 1.2E-84 T 19-04-2016 AMED_6308 6b9fa89cdde825ea9aeb6e8a45f7a518 404 Pfam PF06224 Winged helix DNA-binding domain 37 381 1.7E-70 T 19-04-2016 IPR009351 Protein of unknown function DUF1006 AMED_3169 3a87120b5c8f573d08f225495b41bc0a 762 Pfam PF02687 FtsX-like permease family 642 748 1.7E-8 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_3169 3a87120b5c8f573d08f225495b41bc0a 762 Pfam PF02687 FtsX-like permease family 201 312 5.8E-6 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_5550 d6ee1728f7597b00c45ad30ff32e9e9d 110 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 10 102 1.4E-8 T 19-04-2016 IPR022536 ESX-1 secretion-associated protein EspC AMED_2109 36d66d018db1a5f33c2fb04ae99a3bbe 536 PANTHER PTHR30003:SF0 1 536 8.5E-225 T 19-04-2016 AMED_2109 36d66d018db1a5f33c2fb04ae99a3bbe 536 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 13 523 1.9E-135 T 19-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMED_2109 36d66d018db1a5f33c2fb04ae99a3bbe 536 PANTHER PTHR30003 1 536 8.5E-225 T 19-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMED_2109 36d66d018db1a5f33c2fb04ae99a3bbe 536 Pfam PF02652 L-lactate permease 14 523 4.5E-139 T 19-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AMED_1076 f5cac620e70daf3925833c3d56bf0feb 253 Pfam PF13828 Domain of unknown function (DUF4190) 178 236 7.8E-15 T 19-04-2016 IPR025241 Domain of unknown function DUF4190 AMED_6820 3a54cd5c04b8480d97c0dd20cfca2649 165 Pfam PF14279 HNH endonuclease 82 127 3.2E-13 T 19-04-2016 IPR029471 HNH endonuclease 5 AMED_6820 3a54cd5c04b8480d97c0dd20cfca2649 165 PANTHER PTHR33877:SF2 1 161 1.9E-54 T 19-04-2016 AMED_6820 3a54cd5c04b8480d97c0dd20cfca2649 165 PANTHER PTHR33877 1 161 1.9E-54 T 19-04-2016 AMED_6820 3a54cd5c04b8480d97c0dd20cfca2649 165 SMART SM00507 69 118 7.6E-15 T 19-04-2016 IPR003615 HNH nuclease AMED_5888 9643d5ea8f8eaa410750bea2fc13590c 126 Pfam PF01740 STAS domain 22 123 1.1E-8 T 19-04-2016 IPR002645 STAS domain AMED_5888 9643d5ea8f8eaa410750bea2fc13590c 126 SUPERFAMILY SSF52091 22 125 6.87E-16 T 19-04-2016 IPR002645 STAS domain AMED_5888 9643d5ea8f8eaa410750bea2fc13590c 126 Gene3D G3DSA:3.30.750.24 21 125 1.5E-18 T 19-04-2016 IPR002645 STAS domain AMED_5888 9643d5ea8f8eaa410750bea2fc13590c 126 PANTHER PTHR33495 4 125 5.2E-18 T 19-04-2016 AMED_1680 c423345fce353d2b9a5f5f3623b24991 402 SUPERFAMILY SSF63829 96 322 9.81E-12 T 19-04-2016 AMED_1680 c423345fce353d2b9a5f5f3623b24991 402 Pfam PF07995 Glucose / Sorbosone dehydrogenase 109 286 8.9E-18 T 19-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 AMED_1680 c423345fce353d2b9a5f5f3623b24991 402 Gene3D G3DSA:2.120.10.30 11 16 6.3E-31 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_1680 c423345fce353d2b9a5f5f3623b24991 402 Gene3D G3DSA:2.120.10.30 75 394 6.3E-31 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_4087 90803f244b8db92313c73e3e79ff9f60 448 Gene3D G3DSA:3.40.190.10 44 175 4.8E-17 T 19-04-2016 AMED_4087 90803f244b8db92313c73e3e79ff9f60 448 PANTHER PTHR30061 10 444 1.1E-55 T 19-04-2016 AMED_4087 90803f244b8db92313c73e3e79ff9f60 448 SUPERFAMILY SSF53850 48 431 9.72E-63 T 19-04-2016 AMED_4087 90803f244b8db92313c73e3e79ff9f60 448 Pfam PF01547 Bacterial extracellular solute-binding protein 58 345 2.0E-29 T 19-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 AMED_4087 90803f244b8db92313c73e3e79ff9f60 448 Gene3D G3DSA:3.40.190.10 176 363 1.0E-42 T 19-04-2016 AMED_1009 f504121eea25d5ffbfaa33230b4d6072 361 SUPERFAMILY SSF53756 18 355 3.35E-55 T 19-04-2016 AMED_1009 f504121eea25d5ffbfaa33230b4d6072 361 Pfam PF13439 Glycosyltransferase Family 4 20 179 3.2E-9 T 19-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain AMED_1009 f504121eea25d5ffbfaa33230b4d6072 361 Gene3D G3DSA:3.40.50.2000 160 330 4.1E-18 T 19-04-2016 AMED_1009 f504121eea25d5ffbfaa33230b4d6072 361 Pfam PF13692 Glycosyl transferases group 1 200 324 4.9E-20 T 19-04-2016 AMED_1009 f504121eea25d5ffbfaa33230b4d6072 361 PANTHER PTHR12526 3 355 2.3E-36 T 19-04-2016 AMED_0416 81df5d962c2ca981c23da743eab90ded 213 PANTHER PTHR40078:SF1 16 199 5.4E-46 T 19-04-2016 AMED_0416 81df5d962c2ca981c23da743eab90ded 213 PANTHER PTHR40078 16 199 5.4E-46 T 19-04-2016 AMED_6187 f8b9fcec347e85de0a869da2a30a1bcb 171 Pfam PF12079 Protein of unknown function (DUF3558) 4 163 1.8E-18 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_0448 1e99886af1ef15f40183a60b8da41a37 266 SUPERFAMILY SSF53335 17 173 4.36E-7 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5551 6aa2d336b7691624a5ba3d0700ee637f 159 Gene3D G3DSA:3.30.1310.10 27 87 5.8E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_5551 6aa2d336b7691624a5ba3d0700ee637f 159 SUPERFAMILY SSF82607 26 104 1.44E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_5551 6aa2d336b7691624a5ba3d0700ee637f 159 Pfam PF02575 YbaB/EbfC DNA-binding family 24 102 6.8E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_8803 142b289b7fe824773c4abad3a9d90079 238 Pfam PF00482 Type II secretion system (T2SS), protein F 101 221 6.9E-17 T 19-04-2016 IPR018076 Type II secretion system F domain AMED_6096 ca4972cdb47123afc1462f96cb0ad753 135 SUPERFAMILY SSF54427 4 130 1.33E-32 T 19-04-2016 IPR032710 NTF2-like domain AMED_6096 ca4972cdb47123afc1462f96cb0ad753 135 Pfam PF12680 SnoaL-like domain 13 116 4.4E-17 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_6096 ca4972cdb47123afc1462f96cb0ad753 135 Gene3D G3DSA:3.10.450.50 1 128 1.9E-34 T 19-04-2016 IPR032710 NTF2-like domain AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 402 40.728 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 Gene3D G3DSA:3.40.50.1260 6 188 8.5E-59 T 19-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PANTHER PTHR11406 1 404 4.6E-192 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 Gene3D G3DSA:3.40.50.1270 189 390 1.8E-84 T 19-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 SUPERFAMILY SSF53748 5 402 4.12E-141 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 13 29 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 321 346 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 112 127 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 378 395 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 354 365 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 199 218 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 34 56 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 146 168 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PRINTS PR00477 Phosphoglycerate kinase family signature 176 198 3.7E-78 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 PIRSF PIRSF000724 1 404 8.7E-132 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_2799 97312e87d95945cb832a0e0f4eace3a1 404 Pfam PF00162 Phosphoglycerate kinase 14 392 2.3E-143 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMED_8503 479ff34a4dab467708ddfeedcf95470c 225 Pfam PF14011 EspG family 3 219 5.6E-24 T 19-04-2016 IPR025734 EspG family AMED_8628 d62b7dd948d3742d69b73b0397b2ca34 186 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 6 123 8.0E-19 T 19-04-2016 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 AMED_9332 03653e9afdb34ddce6bd1ce7653cd215 139 Pfam PF13630 SdpI/YhfL protein family 29 95 5.5E-9 T 19-04-2016 IPR025962 SdpI/YhfL protein family AMED_1421 41e3e801c62bde56032f1c5a6fec4ab4 251 Gene3D G3DSA:1.20.120.450 100 236 5.9E-4 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_1421 41e3e801c62bde56032f1c5a6fec4ab4 251 Pfam PF12867 DinB superfamily 94 239 5.4E-14 T 19-04-2016 IPR024775 DinB-like domain AMED_1421 41e3e801c62bde56032f1c5a6fec4ab4 251 SUPERFAMILY SSF109854 91 208 1.74E-8 T 19-04-2016 AMED_5544 abe4fc14fbdb2ff8f55b03934517ab91 263 Gene3D G3DSA:3.40.50.150 9 262 9.9E-96 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5544 abe4fc14fbdb2ff8f55b03934517ab91 263 Pfam PF04672 S-adenosyl methyltransferase 9 252 5.2E-85 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_5544 abe4fc14fbdb2ff8f55b03934517ab91 263 SUPERFAMILY SSF53335 11 254 5.48E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5544 abe4fc14fbdb2ff8f55b03934517ab91 263 PIRSF PIRSF017393 3 263 1.9E-83 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_7156 e4fb62866bfbdc5c263e28a961b7527c 403 Gene3D G3DSA:3.40.50.2300 163 311 1.1E-12 T 19-04-2016 AMED_7156 e4fb62866bfbdc5c263e28a961b7527c 403 Pfam PF13458 Periplasmic binding protein 42 367 3.4E-47 T 19-04-2016 IPR028081 Leucine-binding protein domain AMED_7156 e4fb62866bfbdc5c263e28a961b7527c 403 Gene3D G3DSA:3.40.50.2300 38 162 1.3E-24 T 19-04-2016 AMED_7156 e4fb62866bfbdc5c263e28a961b7527c 403 Gene3D G3DSA:3.40.50.2300 312 357 1.3E-24 T 19-04-2016 AMED_7156 e4fb62866bfbdc5c263e28a961b7527c 403 SUPERFAMILY SSF53822 42 365 5.46E-46 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_7014 49a64e86d597c2bf054ddc50e3213e75 264 PANTHER PTHR12993:SF13 2 261 7.1E-40 T 19-04-2016 AMED_7014 49a64e86d597c2bf054ddc50e3213e75 264 Gene3D G3DSA:3.40.50.10320 3 263 2.6E-65 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_7014 49a64e86d597c2bf054ddc50e3213e75 264 PANTHER PTHR12993 2 261 7.1E-40 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_7014 49a64e86d597c2bf054ddc50e3213e75 264 SUPERFAMILY SSF102588 3 240 2.09E-52 T 19-04-2016 IPR024078 Putative deacetylase LmbE-like domain AMED_7014 49a64e86d597c2bf054ddc50e3213e75 264 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 146 9.3E-25 T 19-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related AMED_9229 8cf65a7ea9c3b59b5bf45fabafe1dd24 184 Gene3D G3DSA:3.30.1050.10 64 177 1.6E-13 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_9229 8cf65a7ea9c3b59b5bf45fabafe1dd24 184 Pfam PF02036 SCP-2 sterol transfer family 114 175 4.2E-9 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_9229 8cf65a7ea9c3b59b5bf45fabafe1dd24 184 SUPERFAMILY SSF55718 67 180 3.06E-18 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_6010 08cbf9fbda991537a2daf6a85ab7202d 323 Pfam PF13614 AAA domain 73 249 4.7E-62 T 19-04-2016 IPR025669 AAA domain AMED_6010 08cbf9fbda991537a2daf6a85ab7202d 323 PANTHER PTHR13696:SF78 16 323 5.8E-110 T 19-04-2016 AMED_6010 08cbf9fbda991537a2daf6a85ab7202d 323 Gene3D G3DSA:3.40.50.300 73 322 3.1E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6010 08cbf9fbda991537a2daf6a85ab7202d 323 SUPERFAMILY SSF52540 72 322 1.77E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6010 08cbf9fbda991537a2daf6a85ab7202d 323 PANTHER PTHR13696 16 323 5.8E-110 T 19-04-2016 AMED_1956 a6493e7910772d4da675f2f19ec1a3bd 241 Pfam PF02517 CAAX protease self-immunity 144 231 1.0E-11 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_7682 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.40.50.980 199 291 4.8E-24 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.40.50.980 345 409 4.8E-24 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.30.300.30 476 601 6.8E-9 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 SUPERFAMILY SSF56801 13 296 3.92E-113 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 SUPERFAMILY SSF56801 348 610 3.92E-113 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:2.30.38.10 410 472 1.6E-18 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 Gene3D G3DSA:3.40.50.980 13 198 2.0E-30 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 Pfam PF00501 AMP-binding enzyme 20 478 1.4E-84 T 19-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AMED_7682 5be016715b780f269b8b099aaed04a63 619 PANTHER PTHR24096 11 299 1.0E-153 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 PANTHER PTHR24096 334 614 1.0E-153 T 19-04-2016 AMED_7682 5be016715b780f269b8b099aaed04a63 619 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 19-04-2016 IPR020845 AMP-binding, conserved site AMED_7029 1a09d9ccbf1e1dcebe913377798556f9 292 PANTHER PTHR11795:SF398 1 292 1.0E-79 T 19-04-2016 AMED_7029 1a09d9ccbf1e1dcebe913377798556f9 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 276 4.7E-30 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_7029 1a09d9ccbf1e1dcebe913377798556f9 292 PANTHER PTHR11795 1 292 1.0E-79 T 19-04-2016 AMED_5006 5d03e75648c84058e0e5c8bf886c40f2 45 SUPERFAMILY SSF57829 1 44 1.83E-6 T 19-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMED_5006 5d03e75648c84058e0e5c8bf886c40f2 45 Pfam PF01783 Ribosomal L32p protein family 2 43 1.2E-7 T 19-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 AMED_5006 5d03e75648c84058e0e5c8bf886c40f2 45 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 39 5.1E-6 T 19-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 AMED_9310 7bb243073cf2ed9ce8c86d8fa84126d2 400 Pfam PF01594 Domain of unknown function DUF20 33 355 5.2E-62 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_9310 7bb243073cf2ed9ce8c86d8fa84126d2 400 PANTHER PTHR21716 31 388 9.2E-60 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMED_0241 bc3458aa3d3bb82f836370d2e19f6d0b 193 Pfam PF10759 Protein of unknown function (DUF2587) 41 193 5.0E-77 T 19-04-2016 IPR019695 Bacterial proteasome activator GO:0061136 AMED_4266 b75874764a8672d272e27eafcb1ff6ab 379 Pfam PF06081 Aromatic acid exporter family member 1 49 184 7.8E-8 T 19-04-2016 IPR010343 Aromatic acid exporter family member 1 AMED_5429 4b22127666a1b92c11c7b839eec302fc 110 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 76 3.6E-8 T 19-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain AMED_5429 4b22127666a1b92c11c7b839eec302fc 110 Gene3D G3DSA:3.30.70.900 7 89 9.4E-13 T 19-04-2016 AMED_5429 4b22127666a1b92c11c7b839eec302fc 110 SUPERFAMILY SSF54909 6 100 2.48E-17 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_7875 be1917b0746399bc95397605487cec1e 154 Pfam PF14081 Domain of unknown function (DUF4262) 21 139 1.7E-31 T 19-04-2016 IPR025358 Protein of unknown function DUF4262 AMED_0038 4573a4ff558567167b9dc978b643bcc1 88 Hamap MF_00631 Cell division protein CrgA [crgA]. 1 88 23.544 T 19-04-2016 IPR009619 Cell division protein CrgA AMED_0038 4573a4ff558567167b9dc978b643bcc1 88 Pfam PF06781 Uncharacterised protein family (UPF0233) 1 88 2.8E-35 T 19-04-2016 IPR009619 Cell division protein CrgA AMED_2691 496674db04fd4695b2f136ef080d8338 133 PANTHER PTHR28259 7 127 1.3E-25 T 19-04-2016 AMED_2691 496674db04fd4695b2f136ef080d8338 133 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 12 122 3.3E-21 T 19-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMED_2691 496674db04fd4695b2f136ef080d8338 133 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 10 127 17.982 T 19-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMED_6539 c992f6e304662630dc49d937655f445e 443 PANTHER PTHR34219:SF1 20 442 3.3E-118 T 19-04-2016 AMED_6539 c992f6e304662630dc49d937655f445e 443 Pfam PF03929 PepSY-associated TM region 30 377 1.2E-51 T 19-04-2016 IPR005625 PepSY-associated TM protein AMED_6539 c992f6e304662630dc49d937655f445e 443 PANTHER PTHR34219 20 442 3.3E-118 T 19-04-2016 AMED_3116 d3b658476ace8e44b491f815fae4308b 203 Pfam PF12277 Protein of unknown function (DUF3618) 3 46 8.9E-13 T 19-04-2016 IPR022062 Protein of unknown function DUF3618 AMED_2805 0666969ec2e22f2d89e9c03cb6cb6cae 356 PANTHER PTHR38658 1 310 1.5E-71 T 19-04-2016 AMED_2805 0666969ec2e22f2d89e9c03cb6cb6cae 356 PANTHER PTHR38658:SF1 1 310 1.5E-71 T 19-04-2016 AMED_2805 0666969ec2e22f2d89e9c03cb6cb6cae 356 Pfam PF10128 Glucose-6-phosphate dehydrogenase subunit 52 297 2.3E-88 T 19-04-2016 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA AMED_2805 0666969ec2e22f2d89e9c03cb6cb6cae 356 TIGRFAM TIGR00534 OpcA: glucose-6-phosphate dehydrogenase assembly protein OpcA 2 302 3.5E-79 T 19-04-2016 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA AMED_7785 e4d1a76cf21ea481c72b13801d3cf69e 657 Gene3D G3DSA:3.40.390.10 246 323 1.4E-5 T 19-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AMED_7785 e4d1a76cf21ea481c72b13801d3cf69e 657 SUPERFAMILY SSF55486 230 302 7.7E-5 T 19-04-2016 AMED_7785 e4d1a76cf21ea481c72b13801d3cf69e 657 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 79 387 8.3E-38 T 19-04-2016 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 AMED_1104 86abcdc7f934a25da3484e4919572619 820 PANTHER PTHR34987 214 789 9.4E-128 T 19-04-2016 AMED_1104 86abcdc7f934a25da3484e4919572619 820 Pfam PF05592 Bacterial alpha-L-rhamnosidase 406 787 4.9E-30 T 19-04-2016 IPR008902 Bacterial alpha-L-rhamnosidase AMED_1104 86abcdc7f934a25da3484e4919572619 820 SUPERFAMILY SSF49785 103 203 3.19E-10 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1104 86abcdc7f934a25da3484e4919572619 820 Gene3D G3DSA:2.60.120.260 68 213 1.4E-15 T 19-04-2016 IPR008979 Galactose-binding domain-like AMED_1104 86abcdc7f934a25da3484e4919572619 820 PANTHER PTHR34987:SF1 214 789 9.4E-128 T 19-04-2016 AMED_1104 86abcdc7f934a25da3484e4919572619 820 SUPERFAMILY SSF48208 355 817 9.36E-56 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1104 86abcdc7f934a25da3484e4919572619 820 Pfam PF00754 F5/8 type C domain 100 212 1.7E-9 T 19-04-2016 IPR000421 Coagulation factor 5/8 C-terminal domain AMED_1104 86abcdc7f934a25da3484e4919572619 820 Gene3D G3DSA:1.50.10.10 532 598 8.3E-6 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_4408 88c38508017133b5981bd2352cf3ab4f 481 PANTHER PTHR32208 305 474 2.9E-27 T 19-04-2016 AMED_4408 88c38508017133b5981bd2352cf3ab4f 481 PANTHER PTHR32208:SF28 305 474 2.9E-27 T 19-04-2016 AMED_4408 88c38508017133b5981bd2352cf3ab4f 481 Pfam PF09362 Domain of unknown function (DUF1996) 305 459 3.1E-20 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_4623 2e82554d73fd5ed0f8755b4fb5064fff 138 Gene3D G3DSA:3.40.50.10540 3 137 3.8E-52 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_4623 2e82554d73fd5ed0f8755b4fb5064fff 138 Pfam PF02515 CoA-transferase family III 6 137 1.8E-49 T 19-04-2016 IPR003673 CoA-transferase family III GO:0003824 AMED_4623 2e82554d73fd5ed0f8755b4fb5064fff 138 SUPERFAMILY SSF89796 4 137 2.22E-52 T 19-04-2016 IPR023606 CoA-transferase family III domain AMED_0190 f77de07c51be5d424d28407f9e9c13d5 150 Pfam PF03994 Domain of Unknown Function (DUF350) 95 148 3.0E-11 T 19-04-2016 IPR007140 Protein of unknown function DUF350 AMED_0190 f77de07c51be5d424d28407f9e9c13d5 150 Pfam PF03994 Domain of Unknown Function (DUF350) 25 78 7.3E-13 T 19-04-2016 IPR007140 Protein of unknown function DUF350 AMED_3073 a545fde2c05e160f5f8e50bce8ba2e12 269 PANTHER PTHR32243 2 269 6.1E-81 T 19-04-2016 AMED_3073 a545fde2c05e160f5f8e50bce8ba2e12 269 SUPERFAMILY SSF161098 3 268 4.06E-66 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3073 a545fde2c05e160f5f8e50bce8ba2e12 269 Gene3D G3DSA:1.10.3720.10 5 256 8.2E-59 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3073 a545fde2c05e160f5f8e50bce8ba2e12 269 PANTHER PTHR32243:SF26 2 269 6.1E-81 T 19-04-2016 AMED_3073 a545fde2c05e160f5f8e50bce8ba2e12 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 262 1.5E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5385 c5f22922556c6e9f8640f52c1ab2586e 301 Gene3D G3DSA:2.30.320.10 56 291 3.3E-15 T 19-04-2016 IPR015315 Protein of unknown function DUF1963 AMED_5385 c5f22922556c6e9f8640f52c1ab2586e 301 SUPERFAMILY SSF103032 55 291 2.88E-13 T 19-04-2016 IPR015315 Protein of unknown function DUF1963 AMED_5385 c5f22922556c6e9f8640f52c1ab2586e 301 Pfam PF09234 Domain of unknown function (DUF1963) 56 292 3.4E-15 T 19-04-2016 IPR015315 Protein of unknown function DUF1963 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 SUPERFAMILY SSF48498 81 195 1.35E-5 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_0196 56a1c9b37ef79f8837a4381733653076 202 SUPERFAMILY SSF46689 4 82 7.48E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 PANTHER PTHR30328 3 197 3.2E-28 T 19-04-2016 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 9.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 9.1E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 Gene3D G3DSA:1.10.357.10 3 196 1.5E-39 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 PANTHER PTHR30328:SF28 3 197 3.2E-28 T 19-04-2016 AMED_0196 56a1c9b37ef79f8837a4381733653076 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 2.9E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1109 838492140d7f67a3f6391fadc7c79cb6 217 Gene3D G3DSA:1.20.1260.10 4 120 2.2E-5 T 19-04-2016 IPR012347 Ferritin-related AMED_1109 838492140d7f67a3f6391fadc7c79cb6 217 Pfam PF13794 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like 8 188 2.4E-81 T 19-04-2016 AMED_1109 838492140d7f67a3f6391fadc7c79cb6 217 SUPERFAMILY SSF47240 11 129 1.62E-7 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_4523 654ee456c322c192e84c5de830e04ce3 117 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 85 1.8E-22 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_4523 654ee456c322c192e84c5de830e04ce3 117 PANTHER PTHR30007:SF0 12 116 1.9E-22 T 19-04-2016 AMED_4523 654ee456c322c192e84c5de830e04ce3 117 PANTHER PTHR30007 12 116 1.9E-22 T 19-04-2016 AMED_5800 654ee456c322c192e84c5de830e04ce3 117 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 85 1.8E-22 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_5800 654ee456c322c192e84c5de830e04ce3 117 PANTHER PTHR30007:SF0 12 116 1.9E-22 T 19-04-2016 AMED_5800 654ee456c322c192e84c5de830e04ce3 117 PANTHER PTHR30007 12 116 1.9E-22 T 19-04-2016 AMED_3803 654ee456c322c192e84c5de830e04ce3 117 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 12 85 1.8E-22 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_3803 654ee456c322c192e84c5de830e04ce3 117 PANTHER PTHR30007:SF0 12 116 1.9E-22 T 19-04-2016 AMED_3803 654ee456c322c192e84c5de830e04ce3 117 PANTHER PTHR30007 12 116 1.9E-22 T 19-04-2016 AMED_6957 947a9b7b3f5e025a90aee99ab50b46ca 490 PANTHER PTHR10543:SF37 16 489 3.5E-159 T 19-04-2016 AMED_6957 947a9b7b3f5e025a90aee99ab50b46ca 490 PANTHER PTHR10543 16 489 3.5E-159 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_6957 947a9b7b3f5e025a90aee99ab50b46ca 490 Pfam PF03055 Retinal pigment epithelial membrane protein 28 480 4.5E-114 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_2665 ec6d4d9befbd01169136c41d357d2301 136 SUPERFAMILY SSF54909 21 126 2.73E-22 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_2665 ec6d4d9befbd01169136c41d357d2301 136 Gene3D G3DSA:3.30.70.1060 1 131 2.1E-36 T 19-04-2016 AMED_2665 ec6d4d9befbd01169136c41d357d2301 136 Pfam PF03795 YCII-related domain 29 107 3.0E-10 T 19-04-2016 IPR005545 YCII-related AMED_2665 ec6d4d9befbd01169136c41d357d2301 136 PANTHER PTHR35174 23 136 7.4E-26 T 19-04-2016 AMED_3920 6da1223ec3aca1a044650c90dbcc9864 318 SUPERFAMILY SSF53067 2 109 5.78E-14 T 19-04-2016 AMED_3920 6da1223ec3aca1a044650c90dbcc9864 318 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 3 297 4.9E-37 T 19-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type AMED_3920 6da1223ec3aca1a044650c90dbcc9864 318 Gene3D G3DSA:3.30.420.40 2 73 9.1E-5 T 19-04-2016 AMED_3920 6da1223ec3aca1a044650c90dbcc9864 318 PANTHER PTHR12862 1 303 7.2E-52 T 19-04-2016 AMED_3920 6da1223ec3aca1a044650c90dbcc9864 318 SUPERFAMILY SSF53067 115 308 1.67E-38 T 19-04-2016 AMED_1162 4f9140a73c3c24fa6e60426ac1ba05b3 455 PIRSF PIRSF002746 12 455 1.7E-146 T 19-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMED_1162 4f9140a73c3c24fa6e60426ac1ba05b3 455 Pfam PF02447 GntP family permease 17 454 3.5E-145 T 19-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMED_1162 4f9140a73c3c24fa6e60426ac1ba05b3 455 PANTHER PTHR30354:SF1 12 455 8.3E-191 T 19-04-2016 AMED_1162 4f9140a73c3c24fa6e60426ac1ba05b3 455 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 17 455 9.1E-138 T 19-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AMED_1162 4f9140a73c3c24fa6e60426ac1ba05b3 455 PANTHER PTHR30354 12 455 8.3E-191 T 19-04-2016 AMED_3480 35e88ac7866eb0ba12608d3b9c03546c 159 SUPERFAMILY SSF55961 5 151 2.09E-19 T 19-04-2016 AMED_3480 35e88ac7866eb0ba12608d3b9c03546c 159 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 151 2.2E-15 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_3480 35e88ac7866eb0ba12608d3b9c03546c 159 Gene3D G3DSA:3.30.530.20 5 152 3.0E-10 T 19-04-2016 IPR023393 START-like domain AMED_7596 6016b3ada5fe641566526d3abb2d63e2 440 PANTHER PTHR39441 50 437 1.9E-62 T 19-04-2016 AMED_7596 6016b3ada5fe641566526d3abb2d63e2 440 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 46 431 5.7E-77 T 19-04-2016 IPR018721 Protein of unknown function DUF2252 AMED_4764 bbcde14eafdb8c5ec26b94262cce8cd5 86 SUPERFAMILY SSF47336 7 79 1.31E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4764 bbcde14eafdb8c5ec26b94262cce8cd5 86 Gene3D G3DSA:1.10.1200.10 6 76 4.5E-12 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_7157 e3c10d10337aa25f7d71b953b0c23ee8 147 Gene3D G3DSA:1.10.357.10 11 142 3.6E-30 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4927 2e9967d89a74033585f9224dc246ce06 195 SUPERFAMILY SSF46785 9 147 1.01E-16 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4927 2e9967d89a74033585f9224dc246ce06 195 SMART SM00418 14 94 3.9E-6 T 19-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMED_4927 2e9967d89a74033585f9224dc246ce06 195 Gene3D G3DSA:1.10.10.10 14 86 7.9E-14 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4927 2e9967d89a74033585f9224dc246ce06 195 Pfam PF12840 Helix-turn-helix domain 14 70 6.6E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9327 d9ad00ca01a44e5a3a0f6648150c931b 189 Pfam PF12079 Protein of unknown function (DUF3558) 1 184 3.9E-25 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_6996 15cd9dbd3097bc0fc618fc60a3b522c6 594 Pfam PF12229 Putative peptidoglycan binding domain 251 342 1.9E-9 T 19-04-2016 IPR022029 Putative peptidoglycan binding domain AMED_6996 15cd9dbd3097bc0fc618fc60a3b522c6 594 Pfam PF12229 Putative peptidoglycan binding domain 135 214 1.3E-5 T 19-04-2016 IPR022029 Putative peptidoglycan binding domain AMED_6996 15cd9dbd3097bc0fc618fc60a3b522c6 594 PANTHER PTHR35788:SF1 68 523 5.7E-55 T 19-04-2016 AMED_6996 15cd9dbd3097bc0fc618fc60a3b522c6 594 Pfam PF04294 VanW like protein 386 517 1.0E-40 T 19-04-2016 IPR007391 Vancomycin resistance VanW AMED_6996 15cd9dbd3097bc0fc618fc60a3b522c6 594 PANTHER PTHR35788 68 523 5.7E-55 T 19-04-2016 AMED_8452 c20d2643190be384fbbf357ebda7d3cf 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 52 4.9E-11 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8452 c20d2643190be384fbbf357ebda7d3cf 200 Gene3D G3DSA:1.10.357.10 3 195 2.5E-26 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8452 c20d2643190be384fbbf357ebda7d3cf 200 SUPERFAMILY SSF46689 2 70 1.65E-13 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8452 c20d2643190be384fbbf357ebda7d3cf 200 PANTHER PTHR30328:SF24 1 183 1.7E-16 T 19-04-2016 AMED_8452 c20d2643190be384fbbf357ebda7d3cf 200 PANTHER PTHR30328 1 183 1.7E-16 T 19-04-2016 AMED_3667 0dbb54ca6edba6b8d83dd22479d1a43b 237 Pfam PF06197 Protein of unknown function (DUF998) 22 214 1.1E-15 T 19-04-2016 IPR009339 Protein of unknown function DUF998 AMED_8903 b16fc5842789875b15a24f8d79f87b66 123 Pfam PF10066 Uncharacterized conserved protein (DUF2304) 5 86 9.0E-18 T 19-04-2016 IPR019277 Protein of unknown function DUF2304 AMED_0670 e5115d2b430d8117ce5a60206b46a1bf 93 Gene3D G3DSA:3.30.1310.10 30 89 1.1E-5 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_0670 e5115d2b430d8117ce5a60206b46a1bf 93 SUPERFAMILY SSF82607 29 89 3.27E-5 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_4834 d620307ef5bdb2e4a9696384e9466084 93 Pfam PF05488 PAAR motif 7 83 9.1E-22 T 19-04-2016 IPR008727 PAAR motif AMED_1435 bbe96298e13e0c4fe3789b790be029b8 162 SUPERFAMILY SSF51679 24 148 8.75E-5 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_7546 324dacda43bf5f4f738bf352e8e346a3 460 Pfam PF13006 Insertion element 4 transposase N-terminal 15 107 3.7E-27 T 19-04-2016 IPR024473 Transposase, IS4, N-terminal AMED_7546 324dacda43bf5f4f738bf352e8e346a3 460 SUPERFAMILY SSF53098 133 352 5.69E-30 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMED_7546 324dacda43bf5f4f738bf352e8e346a3 460 Gene3D G3DSA:3.90.350.10 262 320 1.4E-5 T 19-04-2016 IPR014736 Transposase, Tn5-like, core AMED_7546 324dacda43bf5f4f738bf352e8e346a3 460 Pfam PF01609 Transposase DDE domain 132 347 1.5E-27 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_4142 5d3c3fd0e69a5c2e5413326042abee43 144 Pfam PF13581 Histidine kinase-like ATPase domain 21 128 1.6E-9 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4142 5d3c3fd0e69a5c2e5413326042abee43 144 SUPERFAMILY SSF55874 40 130 1.57E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_4142 5d3c3fd0e69a5c2e5413326042abee43 144 Gene3D G3DSA:3.30.565.10 41 93 1.8E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5804 224e50855f6c7af2e60dffe8f2aa3dc2 127 Pfam PF02371 Transposase IS116/IS110/IS902 family 60 127 8.1E-13 T 19-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMED_7401 4df2bc90f134f9bd650fddc58dc42047 468 Pfam PF14885 Hypothetical glycosyl hydrolase family 15 87 370 1.7E-75 T 19-04-2016 IPR029455 Hypothetical glycosyl hydrolase family 15 AMED_7947 9dec739105ce587e7cdd6251185072fd 159 PANTHER PTHR38567 8 157 4.7E-23 T 19-04-2016 AMED_7947 9dec739105ce587e7cdd6251185072fd 159 Pfam PF14124 Domain of unknown function (DUF4291) 11 89 9.7E-15 T 19-04-2016 IPR025633 Protein of unknown function DUF4291 AMED_7947 9dec739105ce587e7cdd6251185072fd 159 Pfam PF14124 Domain of unknown function (DUF4291) 89 156 7.0E-10 T 19-04-2016 IPR025633 Protein of unknown function DUF4291 AMED_7293 7c68efbb45ccd3ec7eea5db592704dd5 600 Gene3D G3DSA:3.40.50.300 161 239 1.1E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7293 7c68efbb45ccd3ec7eea5db592704dd5 600 Gene3D G3DSA:3.40.50.300 359 526 1.1E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7293 7c68efbb45ccd3ec7eea5db592704dd5 600 SUPERFAMILY SSF52540 144 526 9.74E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0393 34dfd34e068ec0ba65d5f534cb04504e 245 Gene3D G3DSA:1.10.1780.10 98 236 3.3E-34 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0393 34dfd34e068ec0ba65d5f534cb04504e 245 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 189 236 3.1E-14 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0393 34dfd34e068ec0ba65d5f534cb04504e 245 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 110 161 2.5E-7 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0393 34dfd34e068ec0ba65d5f534cb04504e 245 PANTHER PTHR11638:SF83 88 236 6.3E-53 T 19-04-2016 AMED_0393 34dfd34e068ec0ba65d5f534cb04504e 245 SUPERFAMILY SSF81923 98 235 3.92E-24 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMED_0393 34dfd34e068ec0ba65d5f534cb04504e 245 PANTHER PTHR11638 88 236 6.3E-53 T 19-04-2016 AMED_5953 329bd427b0c36ee63887f02567282da8 455 SUPERFAMILY SSF103473 6 430 1.57E-66 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_5953 329bd427b0c36ee63887f02567282da8 455 Pfam PF00083 Sugar (and other) transporter 15 227 3.0E-23 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_5953 329bd427b0c36ee63887f02567282da8 455 Pfam PF00083 Sugar (and other) transporter 228 429 5.3E-14 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_5953 329bd427b0c36ee63887f02567282da8 455 PANTHER PTHR23508 11 442 1.4E-181 T 19-04-2016 AMED_5953 329bd427b0c36ee63887f02567282da8 455 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_5953 329bd427b0c36ee63887f02567282da8 455 Gene3D G3DSA:1.20.1250.20 12 218 1.9E-22 T 19-04-2016 AMED_5953 329bd427b0c36ee63887f02567282da8 455 Gene3D G3DSA:1.20.1250.20 236 430 7.3E-25 T 19-04-2016 AMED_5953 329bd427b0c36ee63887f02567282da8 455 PANTHER PTHR23508:SF1 11 442 1.4E-181 T 19-04-2016 AMED_2901 a6b120ad7b6c71f61aa771cfc51161f2 182 Pfam PF13280 WYL domain 5 177 6.0E-33 T 19-04-2016 IPR026881 WYL domain AMED_2901 a6b120ad7b6c71f61aa771cfc51161f2 182 PANTHER PTHR34580:SF3 1 179 1.2E-16 T 19-04-2016 AMED_2901 a6b120ad7b6c71f61aa771cfc51161f2 182 PANTHER PTHR34580 1 179 1.2E-16 T 19-04-2016 AMED_5500 1f649fa09e8685941c23689f933c6ee7 91 SUPERFAMILY SSF53474 16 89 1.43E-13 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5500 1f649fa09e8685941c23689f933c6ee7 91 Gene3D G3DSA:3.40.50.1820 11 90 1.5E-12 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_2091 897274e3b4ca51a7c9e0697a0905397a 100 PANTHER PTHR10160 3 88 1.0E-18 T 19-04-2016 AMED_2091 897274e3b4ca51a7c9e0697a0905397a 100 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 5 88 8.9E-32 T 19-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 AMED_7167 d95d9ecf7ffe1239b792a8d7002fbdb5 159 SUPERFAMILY SSF54593 4 144 7.19E-16 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7167 d95d9ecf7ffe1239b792a8d7002fbdb5 159 Gene3D G3DSA:3.10.180.10 16 141 9.0E-13 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7167 d95d9ecf7ffe1239b792a8d7002fbdb5 159 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 121 4.3E-16 T 19-04-2016 AMED_8985 7d07cb8b0c81a767a95fecf98c28e3ba 634 Pfam PF10101 Predicted membrane protein (DUF2339) 453 626 1.3E-8 T 19-04-2016 IPR019286 Protein of unknown function DUF2339, transmembrane AMED_8985 7d07cb8b0c81a767a95fecf98c28e3ba 634 Pfam PF10101 Predicted membrane protein (DUF2339) 139 304 1.9E-25 T 19-04-2016 IPR019286 Protein of unknown function DUF2339, transmembrane AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 SUPERFAMILY SSF51905 5 307 2.23E-30 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 5.6E-9 T 19-04-2016 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.6E-9 T 19-04-2016 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 95 113 5.6E-9 T 19-04-2016 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 Gene3D G3DSA:3.50.50.60 105 156 9.3E-7 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 Gene3D G3DSA:3.50.50.60 157 304 2.1E-18 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 PANTHER PTHR22912:SF180 1 272 1.4E-18 T 19-04-2016 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 274 7.3E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 Gene3D G3DSA:3.50.50.60 4 104 1.1E-23 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6183 3c5bc7c360602d19550fa84702d9c274 402 PANTHER PTHR22912 1 272 1.4E-18 T 19-04-2016 AMED_7859 75108b906cfc4ff87708a4562646291b 673 PANTHER PTHR11365 1 673 4.0E-201 T 19-04-2016 AMED_7859 75108b906cfc4ff87708a4562646291b 673 SUPERFAMILY SSF53067 2 72 7.64E-6 T 19-04-2016 AMED_7859 75108b906cfc4ff87708a4562646291b 673 SUPERFAMILY SSF53067 254 345 7.64E-6 T 19-04-2016 AMED_7859 75108b906cfc4ff87708a4562646291b 673 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 2 175 5.3E-52 T 19-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal AMED_7859 75108b906cfc4ff87708a4562646291b 673 Pfam PF01968 Hydantoinase/oxoprolinase 196 486 5.6E-83 T 19-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 AMED_5408 094b9e24a738bdc0ef6c4003135ccb5e 382 SUPERFAMILY SSF53335 178 314 1.06E-21 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1246 b7faad2e47659a68a850b7fab1221cc5 999 PANTHER PTHR39344 1 983 0.0 T 19-04-2016 AMED_1246 b7faad2e47659a68a850b7fab1221cc5 999 Hamap MF_01600 UPF0182 protein . 11 908 17.879 T 19-04-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 AMED_1246 b7faad2e47659a68a850b7fab1221cc5 999 Pfam PF03699 Uncharacterised protein family (UPF0182) 20 832 1.4E-272 T 19-04-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 AMED_1181 76f3ea57dc6a7c9440a76b905b5db663 270 Gene3D G3DSA:3.30.70.20 206 265 1.9E-12 T 19-04-2016 AMED_1181 76f3ea57dc6a7c9440a76b905b5db663 270 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 210 264 1.2E-8 T 19-04-2016 AMED_1181 76f3ea57dc6a7c9440a76b905b5db663 270 SUPERFAMILY SSF54862 207 265 2.36E-7 T 19-04-2016 AMED_2732 65185caf0ef2f18570ceca51ace2ac54 219 Pfam PF13490 Putative zinc-finger 12 37 9.7E-9 T 19-04-2016 IPR027383 Putative zinc-finger AMED_1383 331af2f43ae82d924a05aa830a370271 696 Pfam PF05729 NACHT domain 126 302 3.7E-6 T 19-04-2016 AMED_1383 331af2f43ae82d924a05aa830a370271 696 SUPERFAMILY SSF52540 123 294 4.17E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1776 a7241cb7b091cee7504eb84a5a779083 345 Pfam PF02470 MlaD protein 42 112 1.7E-10 T 19-04-2016 IPR003399 Mce/MlaD AMED_1776 a7241cb7b091cee7504eb84a5a779083 345 PANTHER PTHR33371:SF5 1 319 1.8E-90 T 19-04-2016 AMED_1776 a7241cb7b091cee7504eb84a5a779083 345 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 17 304 9.4E-62 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_1776 a7241cb7b091cee7504eb84a5a779083 345 PANTHER PTHR33371 1 319 1.8E-90 T 19-04-2016 AMED_7259 93f6651cf01fe872e334f76053bc8440 298 PANTHER PTHR32243 23 298 4.8E-107 T 19-04-2016 AMED_7259 93f6651cf01fe872e334f76053bc8440 298 SUPERFAMILY SSF161098 27 298 8.97E-74 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7259 93f6651cf01fe872e334f76053bc8440 298 PANTHER PTHR32243:SF31 23 298 4.8E-107 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_7259 93f6651cf01fe872e334f76053bc8440 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 288 1.5E-22 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_7259 93f6651cf01fe872e334f76053bc8440 298 Gene3D G3DSA:1.10.3720.10 27 286 7.6E-71 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6944 efe9eecac9f60152573d66699599e3c5 463 Pfam PF13520 Amino acid permease 29 430 8.5E-57 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6944 efe9eecac9f60152573d66699599e3c5 463 PANTHER PTHR11785 8 463 1.6E-240 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_6944 efe9eecac9f60152573d66699599e3c5 463 PANTHER PTHR11785:SF328 8 463 1.6E-240 T 19-04-2016 AMED_6944 efe9eecac9f60152573d66699599e3c5 463 PIRSF PIRSF006060 4 462 4.2E-90 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 Pfam PF13411 MerR HTH family regulatory protein 1 69 1.9E-17 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.7E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.7E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.7E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 Gene3D G3DSA:1.10.1660.10 1 89 5.7E-18 T 19-04-2016 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PANTHER PTHR30204 1 80 2.2E-12 T 19-04-2016 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 SMART SM00422 1 71 1.3E-11 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 SUPERFAMILY SSF46955 1 80 2.88E-14 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_0911 306bb658e7c99fbaa57bc78f8f8a7e5a 208 PANTHER PTHR30204:SF1 1 80 2.2E-12 T 19-04-2016 AMED_5890 dcbe388554a8793dccfd27aab84aff0b 143 Gene3D G3DSA:3.30.565.10 38 139 1.4E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5890 dcbe388554a8793dccfd27aab84aff0b 143 SUPERFAMILY SSF55874 36 140 6.74E-11 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5890 dcbe388554a8793dccfd27aab84aff0b 143 Pfam PF13581 Histidine kinase-like ATPase domain 29 140 4.1E-21 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_1323 424e4766fed70015c703906eedea11f6 193 PANTHER PTHR30353 10 188 2.8E-18 T 19-04-2016 IPR032818 DedA family AMED_1323 424e4766fed70015c703906eedea11f6 193 Pfam PF09335 SNARE associated Golgi protein 37 152 3.1E-12 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_9344 c0879605c439df8a1a102fead8918e67 283 Gene3D G3DSA:3.40.50.150 73 268 7.2E-13 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9344 c0879605c439df8a1a102fead8918e67 283 SUPERFAMILY SSF53335 49 214 5.89E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_9344 c0879605c439df8a1a102fead8918e67 283 SUPERFAMILY SSF53335 241 275 5.89E-19 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 Pfam PF13411 MerR HTH family regulatory protein 1 61 6.3E-18 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 SMART SM00422 1 69 1.7E-24 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.0E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.0E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.0E-8 T 19-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 PANTHER PTHR30204 1 92 4.9E-25 T 19-04-2016 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 SUPERFAMILY SSF46955 1 111 8.79E-26 T 19-04-2016 IPR009061 Putative DNA-binding domain AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 PANTHER PTHR30204:SF4 1 92 4.9E-25 T 19-04-2016 AMED_4987 fd446722dfcc2e720e63bc48b0c68259 131 Gene3D G3DSA:1.10.1660.10 1 121 6.2E-32 T 19-04-2016 AMED_4565 faef57aa1a94e7a7abe9611276d23b1b 136 Pfam PF11774 Lsr2 1 113 4.4E-39 T 19-04-2016 IPR024412 Lsr2 AMED_4565 faef57aa1a94e7a7abe9611276d23b1b 136 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 112 1.0E-23 T 19-04-2016 IPR024412 Lsr2 AMED_8075 0529f72b4248a5285d140c1317259357 252 PANTHER PTHR10291 1 251 2.9E-126 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_8075 0529f72b4248a5285d140c1317259357 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 197 214 - T 19-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 AMED_8075 0529f72b4248a5285d140c1317259357 252 PANTHER PTHR10291:SF1 1 251 2.9E-126 T 19-04-2016 AMED_8075 0529f72b4248a5285d140c1317259357 252 SUPERFAMILY SSF64005 19 246 1.83E-72 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_8075 0529f72b4248a5285d140c1317259357 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 22 251 3.6E-63 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_8075 0529f72b4248a5285d140c1317259357 252 Gene3D G3DSA:3.40.1180.10 17 251 1.1E-84 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_8075 0529f72b4248a5285d140c1317259357 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 29 251 2.7E-71 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_8075 0529f72b4248a5285d140c1317259357 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 21 252 35.022 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMED_9096 b84a97541859dfda9e26bef1c1479be4 302 PANTHER PTHR30011 20 279 1.5E-21 T 19-04-2016 AMED_9096 b84a97541859dfda9e26bef1c1479be4 302 Pfam PF00296 Luciferase-like monooxygenase 1 275 1.9E-36 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9096 b84a97541859dfda9e26bef1c1479be4 302 Gene3D G3DSA:3.20.20.30 1 295 7.0E-50 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9096 b84a97541859dfda9e26bef1c1479be4 302 SUPERFAMILY SSF51679 1 295 7.2E-52 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_9096 b84a97541859dfda9e26bef1c1479be4 302 TIGRFAM TIGR03564 F420_MSMEG_4879: F420-dependent oxidoreductase, MSMEG_4879 family 22 278 6.8E-97 T 19-04-2016 IPR019910 Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted AMED_8913 0841ef7d649f06cd86d201c562a7b3ce 218 Gene3D G3DSA:3.40.630.40 4 216 2.0E-42 T 19-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 AMED_8913 0841ef7d649f06cd86d201c562a7b3ce 218 PANTHER PTHR30404 3 17 1.4E-33 T 19-04-2016 AMED_8913 0841ef7d649f06cd86d201c562a7b3ce 218 PANTHER PTHR30404 41 218 1.4E-33 T 19-04-2016 AMED_8913 0841ef7d649f06cd86d201c562a7b3ce 218 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 7 213 1.6E-38 T 19-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 AMED_8913 0841ef7d649f06cd86d201c562a7b3ce 218 SMART SM00646 91 213 9.8E-25 T 19-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 AMED_8913 0841ef7d649f06cd86d201c562a7b3ce 218 SUPERFAMILY SSF53187 4 216 5.02E-37 T 19-04-2016 AMED_6001 304b3ea21c9d2fbf632e9e4e3c657853 122 Pfam PF14087 Domain of unknown function (DUF4267) 13 118 3.5E-23 T 19-04-2016 IPR025363 Protein of unknown function DUF4267 AMED_4707 265c4dd3cd14e72250e66a0a6485d7a3 260 PANTHER PTHR30294:SF24 1 258 3.4E-84 T 19-04-2016 AMED_4707 265c4dd3cd14e72250e66a0a6485d7a3 260 PANTHER PTHR30294 1 258 3.4E-84 T 19-04-2016 AMED_4707 265c4dd3cd14e72250e66a0a6485d7a3 260 PIRSF PIRSF006648 1 259 3.2E-66 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_4707 265c4dd3cd14e72250e66a0a6485d7a3 260 Pfam PF01061 ABC-2 type transporter 9 216 4.3E-24 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 Gene3D G3DSA:3.40.50.1820 2 282 7.7E-54 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 PANTHER PTHR10992 167 283 2.6E-44 T 19-04-2016 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 PANTHER PTHR10992 1 138 2.6E-44 T 19-04-2016 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 Pfam PF00561 alpha/beta hydrolase fold 28 136 6.8E-18 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 227 241 1.5E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 1.5E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.5E-10 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_7604 8303ba73143ae10fb4115e644c5d1f4e 305 SUPERFAMILY SSF53474 2 282 1.36E-52 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6638 bdf7cbbdbe3f833849600acc8864f49d 245 Gene3D G3DSA:1.10.260.40 2 34 1.7E-4 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6638 bdf7cbbdbe3f833849600acc8864f49d 245 PANTHER PTHR10245:SF7 1 244 2.2E-33 T 19-04-2016 AMED_6638 bdf7cbbdbe3f833849600acc8864f49d 245 PANTHER PTHR10245 1 244 2.2E-33 T 19-04-2016 AMED_8405 87b9abab28c2cf5231164d33ee6a594b 89 Gene3D G3DSA:1.10.8.50 39 88 7.6E-6 T 19-04-2016 AMED_8405 87b9abab28c2cf5231164d33ee6a594b 89 SUPERFAMILY SSF46946 41 88 5.1E-7 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 Gene3D G3DSA:3.20.20.80 4 450 1.2E-148 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PANTHER PTHR10353:SF36 3 448 3.8E-176 T 19-04-2016 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 TIGRFAM TIGR03356 BGL: beta-galactosidase 5 443 9.0E-165 T 19-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 Pfam PF00232 Glycosyl hydrolase family 1 3 450 1.6E-147 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 SUPERFAMILY SSF51445 4 449 2.23E-151 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PANTHER PTHR10353 3 448 3.8E-176 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 421 433 5.8E-22 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 397 414 5.8E-22 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 376 387 5.8E-22 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 359 367 5.8E-22 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 PRINTS PR00131 Glycosyl hydrolase family 1 signature 286 300 5.8E-22 T 19-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMED_2444 a0d9bf28c447d8aa5915226f9054d47a 452 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 9 23 - T 19-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMED_8213 fbbae52dc3d04d6e393189ae6bde9e97 262 Pfam PF13490 Putative zinc-finger 6 37 6.5E-6 T 19-04-2016 IPR027383 Putative zinc-finger AMED_3970 6a1738058386bbf7866ea09f8b51272d 162 PANTHER PTHR33164 33 161 8.2E-18 T 19-04-2016 AMED_3970 6a1738058386bbf7866ea09f8b51272d 162 Pfam PF12802 MarR family 51 101 9.3E-8 T 19-04-2016 AMED_3970 6a1738058386bbf7866ea09f8b51272d 162 SUPERFAMILY SSF46785 33 150 5.82E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3970 6a1738058386bbf7866ea09f8b51272d 162 SMART SM00347 38 137 2.0E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_3970 6a1738058386bbf7866ea09f8b51272d 162 Gene3D G3DSA:1.10.10.10 31 151 1.0E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8682 09182522102a00d44a6e9d8f7cf5842b 128 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 7 125 5.4E-35 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_8682 09182522102a00d44a6e9d8f7cf5842b 128 SUPERFAMILY SSF50475 2 125 1.96E-28 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8682 09182522102a00d44a6e9d8f7cf5842b 128 PANTHER PTHR35176 1 123 3.6E-12 T 19-04-2016 AMED_8682 09182522102a00d44a6e9d8f7cf5842b 128 Gene3D G3DSA:2.30.110.10 2 125 5.6E-28 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8682 09182522102a00d44a6e9d8f7cf5842b 128 PANTHER PTHR35176:SF3 1 123 3.6E-12 T 19-04-2016 AMED_8682 09182522102a00d44a6e9d8f7cf5842b 128 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 3 86 1.3E-18 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_5878 87d330a506882153ff945fee031a5724 138 Pfam PF13581 Histidine kinase-like ATPase domain 11 129 4.2E-19 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5878 87d330a506882153ff945fee031a5724 138 Gene3D G3DSA:3.30.565.10 16 129 5.7E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_5878 87d330a506882153ff945fee031a5724 138 SUPERFAMILY SSF55874 26 129 1.3E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 Gene3D G3DSA:3.30.565.10 278 373 5.5E-8 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 280 373 4.8E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 SUPERFAMILY SSF55874 271 372 2.1E-12 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 PANTHER PTHR24421:SF10 182 372 2.9E-12 T 19-04-2016 AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 PANTHER PTHR24421:SF10 35 42 2.9E-12 T 19-04-2016 AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 PANTHER PTHR24421 35 42 2.9E-12 T 19-04-2016 AMED_9311 4e9b9cdc90a290adca736772035abc4c 378 PANTHER PTHR24421 182 372 2.9E-12 T 19-04-2016 AMED_1900 abdec7f8996862febc43294b3fe389e5 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 5.8E-15 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1900 abdec7f8996862febc43294b3fe389e5 213 Gene3D G3DSA:1.10.357.10 14 211 1.3E-28 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_1900 abdec7f8996862febc43294b3fe389e5 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 3.2E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1900 abdec7f8996862febc43294b3fe389e5 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 3.2E-9 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_1900 abdec7f8996862febc43294b3fe389e5 213 PANTHER PTHR30055 8 211 4.1E-16 T 19-04-2016 AMED_1900 abdec7f8996862febc43294b3fe389e5 213 SUPERFAMILY SSF46689 12 76 3.54E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_9045 c93a7488bfdafb51ba5141e46b9a280b 368 Pfam PF13576 Pentapeptide repeats (9 copies) 281 326 1.6E-6 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_5134 d83337e5781cc1d86b5d75e7c2b10cde 55 Gene3D G3DSA:3.30.1380.10 8 54 5.6E-10 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_5134 d83337e5781cc1d86b5d75e7c2b10cde 55 SUPERFAMILY SSF55166 13 54 6.43E-7 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_5134 d83337e5781cc1d86b5d75e7c2b10cde 55 Pfam PF08291 Peptidase M15 11 54 2.0E-8 T 19-04-2016 IPR013230 Peptidase M15A, C-terminal MetaCyc: PWY-6470 AMED_8661 3e588389d34b4dd70e35a8cd8417675d 387 Pfam PF10898 Protein of unknown function (DUF2716) 237 367 1.0E-45 T 19-04-2016 IPR020323 Protein of unknown function DUF2716 AMED_8661 3e588389d34b4dd70e35a8cd8417675d 387 ProDom PD095338 YXII PLASMID 236 369 6.0E-16 T 19-04-2016 IPR020323 Protein of unknown function DUF2716 AMED_4289 b0eb856e8a79290eb29a15d7395cbbb1 126 PANTHER PTHR35908 1 120 1.7E-36 T 19-04-2016 AMED_4289 b0eb856e8a79290eb29a15d7395cbbb1 126 PANTHER PTHR35908:SF1 1 120 1.7E-36 T 19-04-2016 AMED_4289 b0eb856e8a79290eb29a15d7395cbbb1 126 Gene3D G3DSA:3.10.180.10 4 119 2.8E-12 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4289 b0eb856e8a79290eb29a15d7395cbbb1 126 SUPERFAMILY SSF54593 1 119 1.21E-14 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2638 e448fc9a1f2167681de285c7f4b18d7b 489 PANTHER PTHR11785 5 480 5.6E-65 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2638 e448fc9a1f2167681de285c7f4b18d7b 489 PIRSF PIRSF006060 5 482 2.0E-63 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_2638 e448fc9a1f2167681de285c7f4b18d7b 489 Pfam PF13520 Amino acid permease 21 446 7.1E-42 T 19-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AMED_7971 40b8d9cabe02ca3eaa7b01d9ce7a98fb 84 PANTHER PTHR38839:SF3 1 83 2.6E-36 T 19-04-2016 AMED_7971 40b8d9cabe02ca3eaa7b01d9ce7a98fb 84 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 84 14.183 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_7971 40b8d9cabe02ca3eaa7b01d9ce7a98fb 84 PANTHER PTHR38839 1 83 2.6E-36 T 19-04-2016 AMED_7971 40b8d9cabe02ca3eaa7b01d9ce7a98fb 84 Pfam PF02467 Transcription factor WhiB 3 71 5.8E-26 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_8617 c49111fae331bd827fa3f05d34dcae0f 195 PANTHER PTHR38011 2 194 2.6E-28 T 19-04-2016 AMED_8617 c49111fae331bd827fa3f05d34dcae0f 195 Gene3D G3DSA:3.40.430.10 4 194 5.1E-30 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_8617 c49111fae331bd827fa3f05d34dcae0f 195 Pfam PF01872 RibD C-terminal domain 3 185 4.1E-14 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMED_8617 c49111fae331bd827fa3f05d34dcae0f 195 PANTHER PTHR38011:SF1 2 194 2.6E-28 T 19-04-2016 AMED_8617 c49111fae331bd827fa3f05d34dcae0f 195 SUPERFAMILY SSF53597 1 194 4.19E-27 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMED_9303 cf9e073abf7f3ba603ab891604b03bc8 263 Pfam PF14011 EspG family 22 254 3.5E-42 T 19-04-2016 IPR025734 EspG family AMED_3377 6ec689d80623b293c10bbe7473f78122 246 PANTHER PTHR11941 3 240 2.8E-53 T 19-04-2016 AMED_3377 6ec689d80623b293c10bbe7473f78122 246 Gene3D G3DSA:3.90.226.10 3 244 4.8E-59 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3377 6ec689d80623b293c10bbe7473f78122 246 SUPERFAMILY SSF52096 3 246 1.32E-59 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMED_3377 6ec689d80623b293c10bbe7473f78122 246 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 222 5.9E-40 T 19-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AMED_9322 1bda52e71c3db6305a490d30bf1e6626 174 Pfam PF02575 YbaB/EbfC DNA-binding family 15 88 9.8E-7 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1120 38e9571d333c3f29cbaf1d83c3440169 265 SUPERFAMILY SSF56112 35 187 1.12E-7 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_1120 38e9571d333c3f29cbaf1d83c3440169 265 TIGRFAM TIGR02569 TIGR02569_actnb: TIGR02569 family protein 7 257 1.0E-63 T 19-04-2016 IPR013402 Conserved hypothetical protein CHP02569 AMED_6080 f90e37c8718fdb0b78a3b1e7616490c6 167 PANTHER PTHR39335 52 163 7.7E-33 T 19-04-2016 AMED_6080 f90e37c8718fdb0b78a3b1e7616490c6 167 Pfam PF03640 Secreted repeat of unknown function 52 88 2.5E-11 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_6080 f90e37c8718fdb0b78a3b1e7616490c6 167 Pfam PF03640 Secreted repeat of unknown function 108 149 8.6E-17 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_5565 d0658f8e0f5dd60b8a25ead59a44eb47 300 PANTHER PTHR11177:SF203 14 195 4.2E-15 T 19-04-2016 AMED_5565 d0658f8e0f5dd60b8a25ead59a44eb47 300 ProSitePatterns PS01095 Chitinases family 18 active site. 153 161 - T 19-04-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 AMED_5565 d0658f8e0f5dd60b8a25ead59a44eb47 300 Pfam PF00704 Glycosyl hydrolases family 18 75 197 1.5E-16 T 19-04-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 AMED_5565 d0658f8e0f5dd60b8a25ead59a44eb47 300 PANTHER PTHR11177 14 195 4.2E-15 T 19-04-2016 AMED_5565 d0658f8e0f5dd60b8a25ead59a44eb47 300 Gene3D G3DSA:3.20.20.80 33 298 1.8E-67 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_5565 d0658f8e0f5dd60b8a25ead59a44eb47 300 SUPERFAMILY SSF51445 34 277 3.39E-62 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_1339 9627529ce22e62210764b3f655b5edca 257 SUPERFAMILY SSF117782 34 119 9.02E-15 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1339 9627529ce22e62210764b3f655b5edca 257 SUPERFAMILY SSF117782 151 238 8.5E-15 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1339 9627529ce22e62210764b3f655b5edca 257 Gene3D G3DSA:3.30.110.70 150 238 1.0E-16 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1339 9627529ce22e62210764b3f655b5edca 257 Gene3D G3DSA:3.30.110.70 34 117 7.2E-16 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1339 9627529ce22e62210764b3f655b5edca 257 PANTHER PTHR34068:SF2 76 257 1.4E-37 T 19-04-2016 AMED_1339 9627529ce22e62210764b3f655b5edca 257 Pfam PF01906 Putative heavy-metal-binding 153 238 1.4E-11 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1339 9627529ce22e62210764b3f655b5edca 257 Pfam PF01906 Putative heavy-metal-binding 59 117 1.1E-9 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1339 9627529ce22e62210764b3f655b5edca 257 PANTHER PTHR34068 76 257 1.4E-37 T 19-04-2016 AMED_7787 e0d794c06a4e150525cf3ed3d8ce8d7b 334 Gene3D G3DSA:3.90.550.10 9 181 1.1E-19 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_7787 e0d794c06a4e150525cf3ed3d8ce8d7b 334 PANTHER PTHR10859 13 313 3.8E-122 T 19-04-2016 AMED_7787 e0d794c06a4e150525cf3ed3d8ce8d7b 334 PANTHER PTHR10859:SF86 13 313 3.8E-122 T 19-04-2016 AMED_7787 e0d794c06a4e150525cf3ed3d8ce8d7b 334 Pfam PF00535 Glycosyl transferase family 2 13 175 9.2E-25 T 19-04-2016 IPR001173 Glycosyltransferase 2-like AMED_7787 e0d794c06a4e150525cf3ed3d8ce8d7b 334 SUPERFAMILY SSF53448 9 184 1.9E-30 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_2177 a0c084b958dea7a17267561e07ae8a76 205 Gene3D G3DSA:2.40.380.10 4 185 1.9E-50 T 19-04-2016 IPR007295 Domain of unknown function DUF402 AMED_2177 a0c084b958dea7a17267561e07ae8a76 205 SUPERFAMILY SSF159234 55 188 3.4E-27 T 19-04-2016 AMED_2177 a0c084b958dea7a17267561e07ae8a76 205 SUPERFAMILY SSF159234 4 21 3.4E-27 T 19-04-2016 AMED_2177 a0c084b958dea7a17267561e07ae8a76 205 Pfam PF04167 Protein of unknown function (DUF402) 75 138 4.5E-16 T 19-04-2016 IPR007295 Domain of unknown function DUF402 AMED_4292 e13c1592959da1deb26c2e7e66ab025b 175 Pfam PF07098 Protein of unknown function (DUF1360) 66 166 2.3E-34 T 19-04-2016 IPR010773 Mycobacterium phage PG1, Gp7 AMED_7726 dfc5917587c0d68442e2e1b697abc454 133 SUPERFAMILY SSF82784 1 131 4.45E-21 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_7726 dfc5917587c0d68442e2e1b697abc454 133 PANTHER PTHR34352 1 131 8.8E-13 T 19-04-2016 AMED_7726 dfc5917587c0d68442e2e1b697abc454 133 Pfam PF02566 OsmC-like protein 30 129 3.5E-15 T 19-04-2016 IPR003718 OsmC/Ohr family AMED_7726 dfc5917587c0d68442e2e1b697abc454 133 Gene3D G3DSA:3.30.300.20 35 131 5.9E-14 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMED_7858 56f3fa6cb4d4688b62478a0eb970586a 566 PANTHER PTHR11365 3 511 4.4E-62 T 19-04-2016 AMED_7858 56f3fa6cb4d4688b62478a0eb970586a 566 Pfam PF02538 Hydantoinase B/oxoprolinase 4 506 3.6E-137 T 19-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 AMED_4176 4424c7249746dc36d3f2aa1c8361818b 171 Pfam PF02577 Bifunctional nuclease 9 133 1.9E-32 T 19-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 AMED_4176 4424c7249746dc36d3f2aa1c8361818b 171 PANTHER PTHR15160 1 169 7.6E-13 T 19-04-2016 AMED_4176 4424c7249746dc36d3f2aa1c8361818b 171 SUPERFAMILY SSF103256 5 138 1.57E-29 T 19-04-2016 IPR003729 Bifunctional nuclease domain GO:0004518 AMED_1982 ab2cb7b7ddb163517125acd95fb845f2 94 SUPERFAMILY SSF81345 1 85 2.22E-13 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_1982 ab2cb7b7ddb163517125acd95fb845f2 94 Pfam PF01032 FecCD transport family 1 86 1.1E-15 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_1982 ab2cb7b7ddb163517125acd95fb845f2 94 Gene3D G3DSA:1.10.3470.10 1 90 3.7E-19 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMED_1982 ab2cb7b7ddb163517125acd95fb845f2 94 PANTHER PTHR30472:SF24 1 93 3.7E-24 T 19-04-2016 AMED_1982 ab2cb7b7ddb163517125acd95fb845f2 94 PANTHER PTHR30472 1 93 3.7E-24 T 19-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 AMED_6068 82e801b2fcab604a43b8fbb1c85597a6 315 Gene3D G3DSA:1.10.3720.10 17 303 1.0E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6068 82e801b2fcab604a43b8fbb1c85597a6 315 PANTHER PTHR32243:SF40 16 312 7.4E-80 T 19-04-2016 AMED_6068 82e801b2fcab604a43b8fbb1c85597a6 315 SUPERFAMILY SSF161098 23 311 1.1E-51 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6068 82e801b2fcab604a43b8fbb1c85597a6 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 310 6.8E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6068 82e801b2fcab604a43b8fbb1c85597a6 315 PANTHER PTHR32243 16 312 7.4E-80 T 19-04-2016 AMED_8355 985fe186294d606b630fd9f708167fe7 267 PANTHER PTHR36151 15 266 4.3E-57 T 19-04-2016 AMED_8355 985fe186294d606b630fd9f708167fe7 267 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 13 231 2.3E-40 T 19-04-2016 IPR018713 Domain of unknown function DUF2236 AMED_8355 985fe186294d606b630fd9f708167fe7 267 PANTHER PTHR36151:SF3 15 266 4.3E-57 T 19-04-2016 AMED_1684 907315e3fddc8cee34950886e26d2b4a 173 Pfam PF10756 Bacterial PH domain 85 150 2.3E-11 T 19-04-2016 IPR019692 Protein of unknown function DUF2581 AMED_1684 907315e3fddc8cee34950886e26d2b4a 173 ProDom PD072817 ANTIGEN WEIGHT MOLECULAR LOW CFP-6 CGL1269 SEQUENCING DIRECT 47 155 1.0E-14 T 19-04-2016 IPR020535 Low molecular weight antigen Cfp6 AMED_2948 e329eb9003156c658b3eadbc5935c0f9 168 SUPERFAMILY SSF109854 4 163 2.29E-39 T 19-04-2016 AMED_2948 e329eb9003156c658b3eadbc5935c0f9 168 Pfam PF04978 Protein of unknown function (DUF664) 20 164 1.1E-42 T 19-04-2016 IPR007061 Protein of unknown function DUF664 AMED_2948 e329eb9003156c658b3eadbc5935c0f9 168 Gene3D G3DSA:1.20.120.450 2 168 1.5E-40 T 19-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase AMED_3261 d70f549dc602db58aef31b3e43ad7584 151 Pfam PF14325 Domain of unknown function (DUF4383) 14 137 3.3E-46 T 19-04-2016 IPR025492 Protein of unknown function DUF4383 AMED_7653 c28b6b7802e97608fa52c10aa94ecae9 296 Gene3D G3DSA:2.120.10.30 35 281 7.1E-25 T 19-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like AMED_7653 c28b6b7802e97608fa52c10aa94ecae9 296 SUPERFAMILY SSF63829 34 282 1.24E-25 T 19-04-2016 AMED_4064 a3fe4363d2036acc214e0cd7dbabac49 94 Gene3D G3DSA:1.10.1200.10 14 88 2.4E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4064 a3fe4363d2036acc214e0cd7dbabac49 94 Pfam PF00550 Phosphopantetheine attachment site 33 76 1.4E-9 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_4064 a3fe4363d2036acc214e0cd7dbabac49 94 SUPERFAMILY SSF47336 14 90 5.23E-13 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMED_6062 413cf08cc15c31c09f91456847f421c0 324 Pfam PF00294 pfkB family carbohydrate kinase 6 288 1.0E-47 T 19-04-2016 IPR011611 Carbohydrate kinase PfkB AMED_6062 413cf08cc15c31c09f91456847f421c0 324 Gene3D G3DSA:3.40.1190.20 4 305 3.6E-82 T 19-04-2016 IPR029056 Ribokinase-like AMED_6062 413cf08cc15c31c09f91456847f421c0 324 PANTHER PTHR10584:SF186 1 285 4.4E-89 T 19-04-2016 AMED_6062 413cf08cc15c31c09f91456847f421c0 324 SUPERFAMILY SSF53613 5 291 1.11E-66 T 19-04-2016 IPR029056 Ribokinase-like AMED_6062 413cf08cc15c31c09f91456847f421c0 324 PANTHER PTHR10584 1 285 4.4E-89 T 19-04-2016 AMED_1905 32653585f815df4382f4cf957602ba68 521 Pfam PF00474 Sodium:solute symporter family 33 437 1.0E-32 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1905 32653585f815df4382f4cf957602ba68 521 PANTHER PTHR11819 2 497 2.0E-81 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_6819 38dde2e624280f8ff7937a6c92b76bb2 123 Gene3D G3DSA:2.160.10.10 25 114 2.6E-7 T 19-04-2016 AMED_6819 38dde2e624280f8ff7937a6c92b76bb2 123 SUPERFAMILY SSF51161 21 114 2.77E-8 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 Gene3D G3DSA:1.10.357.10 4 186 1.4E-31 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 PANTHER PTHR30055:SF73 3 172 1.3E-33 T 19-04-2016 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 SUPERFAMILY SSF46689 4 72 4.72E-15 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 3.4E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 PANTHER PTHR30055 3 172 1.3E-33 T 19-04-2016 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 6.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 6.8E-7 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_0953 43dd4ff265026c0c8fb4275589969b0a 190 SUPERFAMILY SSF48498 78 173 6.88E-9 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_1855 e41f85ce78104c96f385280aa84d7bcc 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 266 2.6E-15 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1855 e41f85ce78104c96f385280aa84d7bcc 277 SUPERFAMILY SSF161098 10 276 1.21E-59 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1855 e41f85ce78104c96f385280aa84d7bcc 277 Gene3D G3DSA:1.10.3720.10 12 264 5.5E-54 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1855 e41f85ce78104c96f385280aa84d7bcc 277 PANTHER PTHR32243:SF31 18 277 3.7E-75 T 19-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 AMED_1855 e41f85ce78104c96f385280aa84d7bcc 277 PANTHER PTHR32243 18 277 3.7E-75 T 19-04-2016 AMED_5402 a3dceb5649188f75b67d66715297d9d6 473 Pfam PF03559 NDP-hexose 2,3-dehydratase 268 469 1.1E-71 T 19-04-2016 IPR005212 NDP-hexose 2,3-dehydratase AMED_5402 a3dceb5649188f75b67d66715297d9d6 473 Pfam PF03559 NDP-hexose 2,3-dehydratase 34 235 5.0E-85 T 19-04-2016 IPR005212 NDP-hexose 2,3-dehydratase AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 Gene3D G3DSA:3.40.710.10 68 294 8.1E-56 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 PANTHER PTHR21581 66 272 2.7E-61 T 19-04-2016 AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 SUPERFAMILY SSF56601 54 282 6.93E-43 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 PANTHER PTHR21581:SF3 66 272 2.7E-61 T 19-04-2016 AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 68 272 1.1E-33 T 19-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 135 152 6.5E-14 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 162 175 6.5E-14 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMED_4394 a58af53f028fd4f4e1d0dd84015a5e38 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 78 89 6.5E-14 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMED_5079 6cfd27dc7e6d400a9accd38bd7aeeb40 250 PANTHER PTHR32208 67 239 4.2E-26 T 19-04-2016 AMED_5079 6cfd27dc7e6d400a9accd38bd7aeeb40 250 PANTHER PTHR32208:SF28 67 239 4.2E-26 T 19-04-2016 AMED_5079 6cfd27dc7e6d400a9accd38bd7aeeb40 250 Pfam PF09362 Domain of unknown function (DUF1996) 23 224 2.3E-41 T 19-04-2016 IPR018535 Domain of unknown function DUF1996 AMED_1466 252f30712f230dc211f5404606efb19d 201 SMART SM00421 138 195 4.1E-19 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1466 252f30712f230dc211f5404606efb19d 201 SUPERFAMILY SSF52172 7 130 2.99E-24 T 19-04-2016 IPR011006 CheY-like superfamily AMED_1466 252f30712f230dc211f5404606efb19d 201 PANTHER PTHR26402 7 201 1.2E-46 T 19-04-2016 AMED_1466 252f30712f230dc211f5404606efb19d 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 193 9.3E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1466 252f30712f230dc211f5404606efb19d 201 Gene3D G3DSA:1.10.10.10 145 200 1.4E-20 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_1466 252f30712f230dc211f5404606efb19d 201 Pfam PF00072 Response regulator receiver domain 9 120 1.1E-16 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1466 252f30712f230dc211f5404606efb19d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 6.7E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1466 252f30712f230dc211f5404606efb19d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 6.7E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1466 252f30712f230dc211f5404606efb19d 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 6.7E-11 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_1466 252f30712f230dc211f5404606efb19d 201 PANTHER PTHR26402:SF151 7 201 1.2E-46 T 19-04-2016 AMED_1466 252f30712f230dc211f5404606efb19d 201 SMART SM00448 7 120 6.5E-15 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMED_1466 252f30712f230dc211f5404606efb19d 201 SUPERFAMILY SSF46894 133 200 4.42E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_1466 252f30712f230dc211f5404606efb19d 201 Gene3D G3DSA:3.40.50.2300 5 144 5.9E-28 T 19-04-2016 AMED_3573 1bde41f4cf51ac0fd012103183c22414 689 Pfam PF13289 SIR2-like domain 502 649 1.6E-14 T 19-04-2016 AMED_3573 1bde41f4cf51ac0fd012103183c22414 689 Pfam PF12770 CHAT domain 60 336 4.6E-23 T 19-04-2016 IPR024983 CHAT domain AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 Gene3D G3DSA:3.40.50.1000 2 187 1.5E-30 T 19-04-2016 IPR023214 HAD-like domain AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 PANTHER PTHR12725 52 188 3.1E-19 T 19-04-2016 AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 52 178 1.5E-13 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 Pfam PF13419 Haloacid dehalogenase-like hydrolase 89 178 4.7E-9 T 19-04-2016 IPR023214 HAD-like domain AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 PANTHER PTHR12725:SF63 52 188 3.1E-19 T 19-04-2016 AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 SUPERFAMILY SSF56784 2 187 6.16E-30 T 19-04-2016 IPR023214 HAD-like domain AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 2.6E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 2.6E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 2.6E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_9076 1aabf302df0ff1ffff28187dd0751567 192 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 2.6E-8 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMED_6270 8608ace966f9898a3dffa151041f8be4 133 Pfam PF11239 Protein of unknown function (DUF3040) 1 87 2.1E-29 T 19-04-2016 IPR021401 Protein of unknown function DUF3040 AMED_5303 bac2df2a3fd8c744c20401ec53429fe2 180 Pfam PF14081 Domain of unknown function (DUF4262) 31 153 4.7E-35 T 19-04-2016 IPR025358 Protein of unknown function DUF4262 AMED_3225 d547e7d4bd3b8b5ed71e1033e3b353df 108 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 5 93 1.9E-21 T 19-04-2016 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-7591|UniPathway: UPA00799|UniPathway: UPA00802 AMED_1061 8209e141a7fc7316ae2a0b00e85e79eb 55 Pfam PF11314 Protein of unknown function (DUF3117) 4 53 1.1E-28 T 19-04-2016 IPR021465 Protein of unknown function DUF3117 AMED_6013 727d795aff46767fc43cab1445a87bf5 209 Pfam PF00293 NUDIX domain 48 158 9.8E-13 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_6013 727d795aff46767fc43cab1445a87bf5 209 Gene3D G3DSA:3.90.79.10 9 180 6.6E-45 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_6013 727d795aff46767fc43cab1445a87bf5 209 PANTHER PTHR11839 8 203 6.4E-63 T 19-04-2016 AMED_6013 727d795aff46767fc43cab1445a87bf5 209 SUPERFAMILY SSF55811 11 180 2.57E-39 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_6013 727d795aff46767fc43cab1445a87bf5 209 PANTHER PTHR11839:SF9 8 203 6.4E-63 T 19-04-2016 AMED_8241 df784627205d15e4bbde55d908e53a5e 106 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 43 79 7.1E-9 T 19-04-2016 IPR019933 DivIVA domain AMED_8241 df784627205d15e4bbde55d908e53a5e 106 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 1 37 2.1E-13 T 19-04-2016 IPR019933 DivIVA domain AMED_5659 3458f92ff76a080b6bb9d9f44582b870 521 Pfam PF16640 Bacterial Ig-like domain (group 3) 271 351 2.5E-13 T 19-04-2016 IPR032109 Bacterial Ig-like domain (group 3) AMED_5659 3458f92ff76a080b6bb9d9f44582b870 521 Pfam PF16640 Bacterial Ig-like domain (group 3) 170 253 2.1E-20 T 19-04-2016 IPR032109 Bacterial Ig-like domain (group 3) AMED_0895 cd6b8205ac739fc13bd22277f8bee2b8 426 PANTHER PTHR32468 8 401 9.9E-96 T 19-04-2016 AMED_0895 cd6b8205ac739fc13bd22277f8bee2b8 426 Pfam PF00999 Sodium/hydrogen exchanger family 15 400 2.3E-49 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_0364 8a807966d80734c7d6f306cd6779c7a3 698 Gene3D G3DSA:3.40.50.300 402 608 2.9E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0364 8a807966d80734c7d6f306cd6779c7a3 698 SUPERFAMILY SSF52540 385 602 1.17E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8618 1f1b69b3840ead4a395901ff937f3b31 127 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 3 83 1.7E-15 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_8618 1f1b69b3840ead4a395901ff937f3b31 127 TIGRFAM TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme 7 121 2.7E-28 T 19-04-2016 IPR019920 F420-binding domain, putative AMED_8618 1f1b69b3840ead4a395901ff937f3b31 127 PANTHER PTHR35176 1 121 4.2E-15 T 19-04-2016 AMED_8618 1f1b69b3840ead4a395901ff937f3b31 127 Gene3D G3DSA:2.30.110.10 1 122 7.5E-30 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_8618 1f1b69b3840ead4a395901ff937f3b31 127 SUPERFAMILY SSF50475 2 122 2.32E-27 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_6767 c7f13c402b2e45da2f85a5dbdeb7c6e0 159 SUPERFAMILY SSF52540 18 91 2.67E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6767 c7f13c402b2e45da2f85a5dbdeb7c6e0 159 PANTHER PTHR22845:SF4 15 107 2.8E-13 T 19-04-2016 AMED_6767 c7f13c402b2e45da2f85a5dbdeb7c6e0 159 Gene3D G3DSA:3.40.50.300 28 91 2.1E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6767 c7f13c402b2e45da2f85a5dbdeb7c6e0 159 PANTHER PTHR22845 15 107 2.8E-13 T 19-04-2016 AMED_6622 9d26cb80af843368119a6fb63788c1ed 112 SUPERFAMILY SSF53927 7 77 4.14E-8 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMED_6622 9d26cb80af843368119a6fb63788c1ed 112 Gene3D G3DSA:3.40.140.10 7 77 3.3E-7 T 19-04-2016 AMED_0203 0cbfe4bff7f7534b27c7c17e34943d39 208 Gene3D G3DSA:2.160.10.10 38 190 8.1E-38 T 19-04-2016 AMED_0203 0cbfe4bff7f7534b27c7c17e34943d39 208 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 113 147 1.4E-8 T 19-04-2016 IPR001451 Hexapeptide repeat AMED_0203 0cbfe4bff7f7534b27c7c17e34943d39 208 PANTHER PTHR23416 39 169 2.5E-29 T 19-04-2016 AMED_0203 0cbfe4bff7f7534b27c7c17e34943d39 208 SUPERFAMILY SSF51161 40 172 2.91E-35 T 19-04-2016 IPR011004 Trimeric LpxA-like AMED_8750 8b6686f77b2d6322643451a6cf436785 261 Pfam PF14011 EspG family 8 249 2.3E-66 T 19-04-2016 IPR025734 EspG family AMED_4543 e74176e3bf0462396fc947a2bacbab6d 111 PANTHER PTHR34389 3 110 2.4E-42 T 19-04-2016 AMED_4543 e74176e3bf0462396fc947a2bacbab6d 111 PANTHER PTHR34389:SF2 3 110 2.4E-42 T 19-04-2016 AMED_4543 e74176e3bf0462396fc947a2bacbab6d 111 SUPERFAMILY SSF54909 2 106 1.27E-32 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4543 e74176e3bf0462396fc947a2bacbab6d 111 Pfam PF05336 Domain of unknown function (DUF718) 3 105 3.6E-30 T 19-04-2016 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 UniPathway: UPA00125 AMED_9291 75b1fc1ea51631af8286d359cd43e802 516 Pfam PF09594 Protein of unknown function (DUF2029) 181 401 9.2E-12 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_9291 75b1fc1ea51631af8286d359cd43e802 516 PIRSF PIRSF010361 22 502 1.6E-153 T 19-04-2016 IPR016570 Uncharacterised conserved protein UCP010361, membrane AMED_1432 29fb3f74780467ae205838198f30da18 119 PANTHER PTHR36221 3 119 1.3E-35 T 19-04-2016 AMED_1432 29fb3f74780467ae205838198f30da18 119 Pfam PF05331 Protein of unknown function (DUF742) 9 119 5.6E-34 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_5149 670b615ef52f5c8ffb9bd0929619659e 208 Pfam PF14273 Domain of unknown function (DUF4360) 30 208 1.1E-60 T 19-04-2016 IPR025649 Protein of unknown function DUF4360 AMED_5149 670b615ef52f5c8ffb9bd0929619659e 208 PANTHER PTHR38847 6 208 7.9E-63 T 19-04-2016 AMED_5149 670b615ef52f5c8ffb9bd0929619659e 208 PANTHER PTHR38847:SF2 6 208 7.9E-63 T 19-04-2016 AMED_9137 206a161c18af83e3a87a08c4ff8f98fe 325 PANTHER PTHR32196 20 324 1.6E-61 T 19-04-2016 AMED_9137 206a161c18af83e3a87a08c4ff8f98fe 325 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 2.2E-36 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_9137 206a161c18af83e3a87a08c4ff8f98fe 325 PANTHER PTHR32196:SF21 20 324 1.6E-61 T 19-04-2016 AMED_1340 4bbf2026d7be31f934055f6f6b203bfb 269 SUPERFAMILY SSF117782 46 127 1.44E-11 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1340 4bbf2026d7be31f934055f6f6b203bfb 269 Pfam PF01906 Putative heavy-metal-binding 68 125 3.6E-8 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_1340 4bbf2026d7be31f934055f6f6b203bfb 269 Gene3D G3DSA:3.30.110.70 45 125 8.8E-12 T 19-04-2016 IPR002765 Uncharacterised protein family UPF0145 AMED_0293 5948b3cfcf8854e0255b56b0d1883a6e 249 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 9 217 9.7E-25 T 19-04-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AMED_5352 94692bc7adf1a845cecdaba05cc450e4 113 Pfam PF13564 DoxX-like family 7 106 1.2E-15 T 19-04-2016 IPR032808 DoxX family AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 13 227 7.7E-63 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 135 149 - T 19-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 Pfam PF01209 ubiE/COQ5 methyltransferase family 11 227 2.9E-50 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 SUPERFAMILY SSF53335 3 228 1.43E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 PANTHER PTHR10108 12 227 2.4E-54 T 19-04-2016 AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 Gene3D G3DSA:3.40.50.150 12 224 1.2E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 4 227 31.265 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMED_0518 1becbebc6d2a8f7b492f7fc42601cc11 229 PANTHER PTHR10108:SF24 12 227 2.4E-54 T 19-04-2016 AMED_8491 06908bccaab33bc96fd4cc24e644a8c7 205 Gene3D G3DSA:3.40.50.1000 3 50 3.3E-22 T 19-04-2016 IPR023214 HAD-like domain AMED_8491 06908bccaab33bc96fd4cc24e644a8c7 205 Gene3D G3DSA:3.40.50.1000 82 173 3.3E-22 T 19-04-2016 IPR023214 HAD-like domain AMED_8491 06908bccaab33bc96fd4cc24e644a8c7 205 SUPERFAMILY SSF56784 5 199 2.48E-32 T 19-04-2016 IPR023214 HAD-like domain AMED_8491 06908bccaab33bc96fd4cc24e644a8c7 205 PANTHER PTHR18901 4 198 2.6E-23 T 19-04-2016 AMED_8491 06908bccaab33bc96fd4cc24e644a8c7 205 Pfam PF12710 haloacid dehalogenase-like hydrolase 6 133 2.4E-11 T 19-04-2016 AMED_8491 06908bccaab33bc96fd4cc24e644a8c7 205 PANTHER PTHR18901:SF14 4 198 2.6E-23 T 19-04-2016 AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 Gene3D G3DSA:3.40.50.720 6 269 2.1E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.3E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 4.3E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 4.3E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 4.3E-6 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 268 2.7E-28 T 19-04-2016 AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 SUPERFAMILY SSF51735 12 269 3.46E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PANTHER PTHR24322 166 194 1.3E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3618 0fa2e541356d2fe7bcc66cf4bfa9075f 271 PANTHER PTHR24322 18 150 1.3E-14 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_4728 20f54b553cff4c9b7b64dafed7e0b199 115 Hamap MF_01483 RNA polymerase-binding protein RbpA [rbpA]. 1 110 26.992 T 19-04-2016 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 AMED_4728 20f54b553cff4c9b7b64dafed7e0b199 115 Pfam PF13397 RNA polymerase-binding protein 4 107 1.8E-41 T 19-04-2016 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 AMED_6304 fd6314e3965c681a65f8ddb78013665c 131 Pfam PF13840 ACT domain 61 123 3.7E-19 T 19-04-2016 IPR027795 GATS-like ACT domain AMED_6304 fd6314e3965c681a65f8ddb78013665c 131 PIRSF PIRSF008459 2 130 9.2E-33 T 19-04-2016 IPR016540 Uncharacterised conserved protein UCP008459 AMED_6304 fd6314e3965c681a65f8ddb78013665c 131 SUPERFAMILY SSF55021 2 59 3.66E-11 T 19-04-2016 AMED_6304 fd6314e3965c681a65f8ddb78013665c 131 Gene3D G3DSA:3.30.2130.10 2 126 5.3E-22 T 19-04-2016 AMED_6304 fd6314e3965c681a65f8ddb78013665c 131 SUPERFAMILY SSF55021 64 128 5.83E-17 T 19-04-2016 AMED_6304 fd6314e3965c681a65f8ddb78013665c 131 PANTHER PTHR31131 3 129 3.7E-22 T 19-04-2016 AMED_9009 0ae3e6f99ead40a22c90aa2937816e45 299 Pfam PF11209 Protein of unknown function (DUF2993) 42 287 1.2E-53 T 19-04-2016 IPR021373 Protein of unknown function DUF2993 AMED_7402 5d0866bf0002467e4f3d03903d20c180 476 PANTHER PTHR30576 5 467 2.9E-93 T 19-04-2016 AMED_7402 5d0866bf0002467e4f3d03903d20c180 476 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 66 473 3.3E-97 T 19-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AMED_7402 5d0866bf0002467e4f3d03903d20c180 476 PANTHER PTHR30576:SF0 5 467 2.9E-93 T 19-04-2016 AMED_7402 5d0866bf0002467e4f3d03903d20c180 476 Pfam PF02397 Bacterial sugar transferase 290 470 8.1E-51 T 19-04-2016 IPR003362 Bacterial sugar transferase AMED_7249 83ddc4c7dfa50e7817e107e09a9785f4 291 Pfam PF06439 Domain of Unknown Function (DUF1080) 13 286 3.1E-22 T 19-04-2016 IPR010496 Domain of unknown function DUF1080 AMED_1720 f26405b8449dd821e22aec9dde744db5 84 Gene3D G3DSA:1.10.10.10 45 77 6.7E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6967 edf574f8771efb9daf0a657968047932 250 Gene3D G3DSA:3.40.50.10310 3 248 2.6E-51 T 19-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_6967 edf574f8771efb9daf0a657968047932 250 SUPERFAMILY SSF102215 3 247 3.4E-43 T 19-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_6967 edf574f8771efb9daf0a657968047932 250 Pfam PF02633 Creatinine amidohydrolase 6 244 2.2E-48 T 19-04-2016 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 AMED_6967 edf574f8771efb9daf0a657968047932 250 PANTHER PTHR35005:SF1 1 250 1.0E-31 T 19-04-2016 AMED_6967 edf574f8771efb9daf0a657968047932 250 PANTHER PTHR35005 1 250 1.0E-31 T 19-04-2016 AMED_3906 2f848853972d4753b61d5aa5e13e60d0 454 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 53 442 5.5E-105 T 19-04-2016 IPR018721 Protein of unknown function DUF2252 AMED_3906 2f848853972d4753b61d5aa5e13e60d0 454 PANTHER PTHR39441 38 453 3.5E-68 T 19-04-2016 AMED_6116 2e729ea3f1f60152e12e3d4d01a0afde 129 SUPERFAMILY SSF54593 3 122 4.43E-20 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6116 2e729ea3f1f60152e12e3d4d01a0afde 129 PANTHER PTHR33993 1 117 4.2E-27 T 19-04-2016 AMED_6116 2e729ea3f1f60152e12e3d4d01a0afde 129 Gene3D G3DSA:3.10.180.10 3 123 4.4E-33 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6116 2e729ea3f1f60152e12e3d4d01a0afde 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 116 5.2E-7 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_6619 306ab656eb7da80366b3829613230e61 115 PANTHER PTHR14948 7 115 5.0E-15 T 19-04-2016 AMED_6619 306ab656eb7da80366b3829613230e61 115 Pfam PF04505 Interferon-induced transmembrane protein 29 96 9.7E-22 T 19-04-2016 IPR007593 CD225/Dispanin family GO:0009607|GO:0016021 AMED_1525 974ba37656321817920b9111e2fc4bd6 415 Pfam PF07470 Glycosyl Hydrolase Family 88 82 360 4.3E-22 T 19-04-2016 IPR010905 Glycosyl hydrolase, family 88 AMED_1525 974ba37656321817920b9111e2fc4bd6 415 Gene3D G3DSA:1.50.10.10 50 405 6.1E-124 T 19-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 AMED_1525 974ba37656321817920b9111e2fc4bd6 415 PANTHER PTHR36845 10 411 9.3E-68 T 19-04-2016 AMED_1525 974ba37656321817920b9111e2fc4bd6 415 SUPERFAMILY SSF48208 70 404 6.8E-103 T 19-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 AMED_1525 974ba37656321817920b9111e2fc4bd6 415 PANTHER PTHR36845:SF1 10 411 9.3E-68 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 PANTHER PTHR18966 83 289 4.1E-30 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 71 290 5.7E-48 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_2362 147a80ccc328d2c2a853241db636edd0 308 Gene3D G3DSA:3.40.190.10 152 256 8.1E-26 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 SMART SM00062 70 296 3.6E-59 T 19-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMED_2362 147a80ccc328d2c2a853241db636edd0 308 SUPERFAMILY SSF53850 60 290 4.48E-53 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 SUPERFAMILY SSF53850 18 24 4.48E-53 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 Gene3D G3DSA:3.40.190.10 67 151 2.3E-24 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 Gene3D G3DSA:3.40.190.10 257 291 2.3E-24 T 19-04-2016 AMED_2362 147a80ccc328d2c2a853241db636edd0 308 PANTHER PTHR18966:SF234 83 289 4.1E-30 T 19-04-2016 AMED_4400 09c1121e72a34b088617b6620877163f 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 315 5.9E-43 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_4400 09c1121e72a34b088617b6620877163f 327 PANTHER PTHR32196:SF23 14 320 3.9E-88 T 19-04-2016 AMED_4400 09c1121e72a34b088617b6620877163f 327 PANTHER PTHR32196 14 320 3.9E-88 T 19-04-2016 AMED_8499 228a9c26ea0143858e58709fd54b0c51 71 Pfam PF11211 Protein of unknown function (DUF2997) 6 51 3.6E-16 T 19-04-2016 IPR021375 Protein of unknown function DUF2997 AMED_0389 7c8d2ae2617ffeb053bd1ae6f257c9ff 106 Pfam PF07978 NIPSNAP 6 99 2.0E-17 T 19-04-2016 IPR012577 NIPSNAP AMED_0389 7c8d2ae2617ffeb053bd1ae6f257c9ff 106 SUPERFAMILY SSF54909 1 99 1.33E-18 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_6524 cafaac1d8276c7f0b5b1c52f4d4b879b 137 SUPERFAMILY SSF55298 23 136 5.5E-30 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_6524 cafaac1d8276c7f0b5b1c52f4d4b879b 137 PANTHER PTHR11803 27 137 5.2E-30 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_6524 cafaac1d8276c7f0b5b1c52f4d4b879b 137 Pfam PF01042 Endoribonuclease L-PSP 26 134 1.1E-20 T 19-04-2016 IPR006175 YjgF/YER057c/UK114 family AMED_6524 cafaac1d8276c7f0b5b1c52f4d4b879b 137 Gene3D G3DSA:3.30.1330.40 23 136 7.8E-34 T 19-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMED_3623 4a9fea019b56b86a712875905fb71700 397 Gene3D G3DSA:1.10.10.10 326 393 5.8E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_3623 4a9fea019b56b86a712875905fb71700 397 SUPERFAMILY SSF46894 324 393 1.8E-19 T 19-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 ProSitePatterns PS00622 LuxR-type HTH domain signature. 352 379 - T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 352 368 6.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 368 380 6.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 338 352 6.7E-13 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 PANTHER PTHR16305 13 308 9.3E-24 T 19-04-2016 AMED_3623 4a9fea019b56b86a712875905fb71700 397 Pfam PF00196 Bacterial regulatory proteins, luxR family 337 391 2.0E-17 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 SUPERFAMILY SSF52540 9 65 9.16E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3623 4a9fea019b56b86a712875905fb71700 397 SUPERFAMILY SSF52540 112 228 9.16E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3623 4a9fea019b56b86a712875905fb71700 397 Gene3D G3DSA:3.40.50.300 101 168 3.5E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3623 4a9fea019b56b86a712875905fb71700 397 Gene3D G3DSA:3.40.50.300 8 66 3.5E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3623 4a9fea019b56b86a712875905fb71700 397 SMART SM00421 335 392 1.9E-23 T 19-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMED_3623 4a9fea019b56b86a712875905fb71700 397 Pfam PF13191 AAA ATPase domain 13 150 6.7E-18 T 19-04-2016 AMED_8034 9da7a26ba1877a44432f4b56890d6585 135 Gene3D G3DSA:3.90.79.10 5 127 5.7E-26 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8034 9da7a26ba1877a44432f4b56890d6585 135 PANTHER PTHR22769 4 131 4.1E-16 T 19-04-2016 AMED_8034 9da7a26ba1877a44432f4b56890d6585 135 SUPERFAMILY SSF55811 4 128 5.55E-26 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_8034 9da7a26ba1877a44432f4b56890d6585 135 Pfam PF00293 NUDIX domain 5 121 3.8E-15 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_0271 f88073d0418c01bfc9592a5e75bc5485 257 Pfam PF01925 Sulfite exporter TauE/SafE 10 249 2.0E-41 T 19-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 AMED_0271 f88073d0418c01bfc9592a5e75bc5485 257 PANTHER PTHR30269:SF10 1 252 4.2E-86 T 19-04-2016 AMED_0271 f88073d0418c01bfc9592a5e75bc5485 257 PANTHER PTHR30269 1 252 4.2E-86 T 19-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 AMED_7043 9028984f65d6f09489141ce02a1960db 245 Pfam PF09490 Probable cobalt transporter subunit (CbtA) 3 233 4.0E-71 T 19-04-2016 IPR012666 Cobalt transporter subunit CbtA, putative AMED_2072 03b374a400ee9b1339870f6af59e9b9c 56 Pfam PF04149 Domain of unknown function (DUF397) 5 55 6.3E-18 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 Pfam PF00375 Sodium:dicarboxylate symporter family 14 404 2.4E-110 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PANTHER PTHR11958 1 423 2.4E-173 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 39 54 - T 19-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 SUPERFAMILY SSF118215 14 406 1.7E-112 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 3.9E-23 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 77 102 3.9E-23 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 3.9E-23 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 3.9E-23 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PRINTS PR00173 Glutamate-aspartate symporter signature 10 30 3.9E-23 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 299 322 - T 19-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 PANTHER PTHR11958:SF49 1 423 2.4E-173 T 19-04-2016 AMED_1916 7ab366816738ff9cad60ae9144cf91ec 426 Gene3D G3DSA:1.10.3860.10 10 410 1.1E-108 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMED_2637 78c6c6f106b29acca2b2cbf7af733546 277 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 45 271 1.6E-88 T 19-04-2016 IPR017792 Urea carboxylase-associated protein 2 AMED_2637 78c6c6f106b29acca2b2cbf7af733546 277 PANTHER PTHR31527 4 267 2.4E-18 T 19-04-2016 AMED_2637 78c6c6f106b29acca2b2cbf7af733546 277 Pfam PF09347 Domain of unknown function (DUF1989) 49 213 2.4E-42 T 19-04-2016 IPR018959 Domain of unknown function DUF1989 AMED_8895 5079682a6ef3b5cd5f2ba3e345f12e95 143 SUPERFAMILY SSF54427 3 126 7.67E-27 T 19-04-2016 IPR032710 NTF2-like domain AMED_8895 5079682a6ef3b5cd5f2ba3e345f12e95 143 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 2 127 1.8E-10 T 19-04-2016 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMED_8895 5079682a6ef3b5cd5f2ba3e345f12e95 143 Gene3D G3DSA:3.10.450.50 3 126 1.7E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_8895 5079682a6ef3b5cd5f2ba3e345f12e95 143 Pfam PF13474 SnoaL-like domain 6 129 1.5E-19 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_8180 d3e8b00e85c4aa0c8aa0f1f92e96d22d 155 Gene3D G3DSA:2.60.120.10 26 153 2.0E-24 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_8180 d3e8b00e85c4aa0c8aa0f1f92e96d22d 155 Pfam PF07883 Cupin domain 48 106 2.3E-10 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_8180 d3e8b00e85c4aa0c8aa0f1f92e96d22d 155 SUPERFAMILY SSF51182 9 145 1.36E-19 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_7490 717b0ce85fb6bff1fc8863ce83dbe63e 188 SUPERFAMILY SSF52833 4 184 6.53E-36 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7490 717b0ce85fb6bff1fc8863ce83dbe63e 188 Gene3D G3DSA:3.40.30.10 5 180 4.8E-39 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7490 717b0ce85fb6bff1fc8863ce83dbe63e 188 Pfam PF01323 DSBA-like thioredoxin domain 6 178 2.8E-37 T 19-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 AMED_7490 717b0ce85fb6bff1fc8863ce83dbe63e 188 PANTHER PTHR13887:SF10 6 181 2.4E-35 T 19-04-2016 AMED_7490 717b0ce85fb6bff1fc8863ce83dbe63e 188 PANTHER PTHR13887 6 181 2.4E-35 T 19-04-2016 AMED_1957 0ab802875f117200cc1e8aecd99600b7 267 Pfam PF02517 CAAX protease self-immunity 159 252 1.3E-12 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_8125 8d024bbe5d532d616ca0961bdf8b7bdd 382 PANTHER PTHR30480 49 376 1.3E-75 T 19-04-2016 AMED_8125 8d024bbe5d532d616ca0961bdf8b7bdd 382 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 65 377 2.0E-77 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_8125 8d024bbe5d532d616ca0961bdf8b7bdd 382 SUPERFAMILY SSF51445 85 379 2.95E-65 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8125 8d024bbe5d532d616ca0961bdf8b7bdd 382 PANTHER PTHR30480:SF7 49 376 1.3E-75 T 19-04-2016 AMED_8125 8d024bbe5d532d616ca0961bdf8b7bdd 382 Gene3D G3DSA:3.20.20.300 70 379 4.8E-77 T 19-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMED_2804 fe5d60a74d83772d8848c3f362e5168c 259 PANTHER PTHR11054 2 254 1.4E-69 T 19-04-2016 AMED_2804 fe5d60a74d83772d8848c3f362e5168c 259 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 240 1.0E-72 T 19-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 AMED_2804 fe5d60a74d83772d8848c3f362e5168c 259 SUPERFAMILY SSF100950 5 252 2.57E-64 T 19-04-2016 AMED_2804 fe5d60a74d83772d8848c3f362e5168c 259 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 8 250 8.4E-73 T 19-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 AMED_2804 fe5d60a74d83772d8848c3f362e5168c 259 Gene3D G3DSA:3.40.50.1360 5 250 9.4E-74 T 19-04-2016 AMED_5771 11de95a921c2c9ded38ab81f37ffae24 314 PANTHER PTHR30193:SF6 6 312 2.4E-98 T 19-04-2016 AMED_5771 11de95a921c2c9ded38ab81f37ffae24 314 SUPERFAMILY SSF161098 73 297 4.45E-61 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5771 11de95a921c2c9ded38ab81f37ffae24 314 Gene3D G3DSA:1.10.3720.10 24 297 9.6E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_5771 11de95a921c2c9ded38ab81f37ffae24 314 PANTHER PTHR30193 6 312 2.4E-98 T 19-04-2016 AMED_5771 11de95a921c2c9ded38ab81f37ffae24 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 298 7.1E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 SUPERFAMILY SSF52833 388 505 2.68E-8 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 6.5E-40 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 6.5E-40 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 6.5E-40 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 6.5E-40 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 329 345 6.5E-40 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 311 329 6.5E-40 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.50.50.60 2 162 3.3E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.50.50.60 277 316 3.3E-55 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 Pfam PF01494 FAD binding domain 2 338 3.3E-80 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PANTHER PTHR13789 1 337 1.5E-94 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.30.9.10 326 344 2.6E-12 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 Gene3D G3DSA:3.30.9.10 163 272 2.6E-12 T 19-04-2016 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 SUPERFAMILY SSF51905 266 346 7.02E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 SUPERFAMILY SSF51905 2 172 7.02E-61 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_3697 ff0d08a2c64a09f5ace628a2df1e0a46 510 PANTHER PTHR13789:SF90 1 337 1.5E-94 T 19-04-2016 AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 Pfam PF02625 XdhC and CoxI family 12 78 1.4E-20 T 19-04-2016 IPR003777 XdhC- CoxI AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 Pfam PF02625 XdhC and CoxI family 118 180 2.3E-18 T 19-04-2016 IPR003777 XdhC- CoxI AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 Pfam PF13478 XdhC Rossmann domain 203 349 8.6E-43 T 19-04-2016 IPR027051 XdhC Rossmann domain AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 PANTHER PTHR30388:SF4 168 369 5.0E-128 T 19-04-2016 AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 PANTHER PTHR30388:SF4 1 124 5.0E-128 T 19-04-2016 AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 PANTHER PTHR30388 168 369 5.0E-128 T 19-04-2016 AMED_1869 8acc50b348492e9decc3a2d54878fd3b 370 PANTHER PTHR30388 1 124 5.0E-128 T 19-04-2016 AMED_3304 3e39612dec4bd59341498933d163342e 435 SUPERFAMILY SSF51735 105 365 3.01E-60 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3304 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 228 244 6.5E-17 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 307 327 6.5E-17 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 192 6.5E-17 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 107 124 6.5E-17 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 254 273 6.5E-17 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 Pfam PF00106 short chain dehydrogenase 106 294 2.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 Gene3D G3DSA:3.40.50.720 105 341 4.1E-58 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_3304 3e39612dec4bd59341498933d163342e 435 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 241 269 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMED_3304 3e39612dec4bd59341498933d163342e 435 PANTHER PTHR24322 110 238 3.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 PANTHER PTHR24322 254 287 3.4E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_3304 3e39612dec4bd59341498933d163342e 435 PANTHER PTHR24322:SF649 110 238 3.4E-41 T 19-04-2016 AMED_3304 3e39612dec4bd59341498933d163342e 435 PANTHER PTHR24322:SF649 254 287 3.4E-41 T 19-04-2016 AMED_3304 3e39612dec4bd59341498933d163342e 435 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 106 292 0.0044 T 19-04-2016 AMED_6717 ddf191b9d2b15b75bcf10e45591f8aba 132 Pfam PF14017 Protein of unknown function (DUF4233) 19 121 3.0E-27 T 19-04-2016 IPR025327 Protein of unknown function DUF4233 AMED_3569 ec931dc290886f716944928b6c24193a 94 SUPERFAMILY SSF81296 16 90 6.16E-11 T 19-04-2016 IPR014756 Immunoglobulin E-set AMED_3569 ec931dc290886f716944928b6c24193a 94 Gene3D G3DSA:2.60.40.10 28 81 1.2E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_5267 aa41c874d65a26046ec83cd55710c42e 408 Gene3D G3DSA:3.40.50.720 3 158 1.3E-10 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5267 aa41c874d65a26046ec83cd55710c42e 408 SUPERFAMILY SSF51905 2 155 7.77E-19 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_5267 aa41c874d65a26046ec83cd55710c42e 408 SUPERFAMILY SSF51905 282 372 7.77E-19 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_6902 d12d574e77e1af3fce2d6a37409346de 258 Pfam PF14099 Polysaccharide lyase 115 240 1.1E-9 T 19-04-2016 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 AMED_6902 d12d574e77e1af3fce2d6a37409346de 258 Gene3D G3DSA:2.60.120.200 133 216 1.0E-4 T 19-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain AMED_8197 63087e8aaefadd3403863503d7155fe7 392 SUPERFAMILY SSF53955 69 267 3.75E-36 T 19-04-2016 IPR023346 Lysozyme-like domain AMED_8197 63087e8aaefadd3403863503d7155fe7 392 Pfam PF13406 Transglycosylase SLT domain 185 233 2.5E-7 T 19-04-2016 IPR031304 Transglycosylase SLT domain 2 AMED_8197 63087e8aaefadd3403863503d7155fe7 392 Gene3D G3DSA:1.10.530.10 187 254 3.2E-6 T 19-04-2016 AMED_8197 63087e8aaefadd3403863503d7155fe7 392 Gene3D G3DSA:1.10.530.10 120 150 3.2E-6 T 19-04-2016 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 Gene3D G3DSA:1.20.1260.10 102 256 2.8E-9 T 19-04-2016 IPR012347 Ferritin-related AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 PANTHER PTHR30458 68 266 1.4E-93 T 19-04-2016 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 PANTHER PTHR30458 354 473 1.4E-93 T 19-04-2016 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 PANTHER PTHR30458 283 315 1.4E-93 T 19-04-2016 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 TIGRFAM TIGR03225 benzo_boxB: benzoyl-CoA oxygenase, B subunit 5 471 8.9E-225 T 19-04-2016 IPR017635 Benzoyl-CoA oxygenase, B subunit KEGG: 00361+1.14.13.20|MetaCyc: PWY-6085|MetaCyc: PWY-6086 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 SUPERFAMILY SSF47240 107 345 1.14E-44 T 19-04-2016 IPR009078 Ferritin-like superfamily AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 PANTHER PTHR30458:SF0 68 266 1.4E-93 T 19-04-2016 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 PANTHER PTHR30458:SF0 354 473 1.4E-93 T 19-04-2016 AMED_8610 1ba88e80c110b5be4bc3f3df4a256956 473 PANTHER PTHR30458:SF0 283 315 1.4E-93 T 19-04-2016 AMED_4781 32917954e037d4f6ea6c6b82b548aec7 102 SUPERFAMILY SSF54909 1 83 3.58E-16 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4781 32917954e037d4f6ea6c6b82b548aec7 102 Pfam PF07978 NIPSNAP 3 98 8.0E-11 T 19-04-2016 IPR012577 NIPSNAP AMED_4781 32917954e037d4f6ea6c6b82b548aec7 102 Gene3D G3DSA:3.30.70.900 1 84 1.4E-7 T 19-04-2016 AMED_5307 b668b9088fc5ac38c86db369547d22b7 205 Pfam PF03591 AzlC protein 1 130 5.1E-34 T 19-04-2016 IPR011606 Branched-chain amino acid transport, permease AMED_5307 b668b9088fc5ac38c86db369547d22b7 205 PANTHER PTHR34979 1 205 1.0E-41 T 19-04-2016 AMED_2514 b80cc23b9b2fb050b50fd2d9a9e350ed 182 Pfam PF17197 Domain of unknown function (DUF5134) 34 179 2.5E-28 T 19-04-2016 IPR033458 Protein of unknown function DUF5134 AMED_5897 87d9d3b804e89f99aa6cb35d97c7e7df 338 SUPERFAMILY SSF51430 7 318 3.4E-87 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5897 87d9d3b804e89f99aa6cb35d97c7e7df 338 Gene3D G3DSA:3.20.20.100 13 320 3.4E-85 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5897 87d9d3b804e89f99aa6cb35d97c7e7df 338 Pfam PF00248 Aldo/keto reductase family 19 317 3.2E-66 T 19-04-2016 IPR023210 NADP-dependent oxidoreductase domain AMED_5897 87d9d3b804e89f99aa6cb35d97c7e7df 338 PANTHER PTHR11732 5 317 7.1E-107 T 19-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta AMED_2847 5c78bf0396c3fcbac72e7855820457c7 161 Pfam PF13577 SnoaL-like domain 9 132 2.8E-30 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_2847 5c78bf0396c3fcbac72e7855820457c7 161 Gene3D G3DSA:3.10.450.50 9 138 9.5E-29 T 19-04-2016 IPR032710 NTF2-like domain AMED_2847 5c78bf0396c3fcbac72e7855820457c7 161 SUPERFAMILY SSF54427 5 144 1.46E-34 T 19-04-2016 IPR032710 NTF2-like domain AMED_0754 e8247f881d573005bf67d8c9e84a8285 458 Pfam PF13641 Glycosyltransferase like family 2 50 302 6.2E-24 T 19-04-2016 AMED_0754 e8247f881d573005bf67d8c9e84a8285 458 Gene3D G3DSA:3.90.550.10 52 308 3.9E-10 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0754 e8247f881d573005bf67d8c9e84a8285 458 SUPERFAMILY SSF53448 51 349 4.98E-27 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_0424 b7c959f25125e8d4e12d7accc020b7cb 203 SUPERFAMILY SSF52540 41 202 6.82E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0424 b7c959f25125e8d4e12d7accc020b7cb 203 Gene3D G3DSA:3.40.50.300 41 200 7.4E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5775 6fae1378c8d22ae9da00f677d869a954 579 PANTHER PTHR36848:SF1 336 539 9.7E-40 T 19-04-2016 AMED_5775 6fae1378c8d22ae9da00f677d869a954 579 PANTHER PTHR36848:SF1 46 316 9.7E-40 T 19-04-2016 AMED_5775 6fae1378c8d22ae9da00f677d869a954 579 Pfam PF17132 alpha-L-rhamnosidase 194 537 7.2E-15 T 19-04-2016 IPR033400 Alpha-L-rhamnosidase RhaM AMED_5775 6fae1378c8d22ae9da00f677d869a954 579 PANTHER PTHR36848 336 539 9.7E-40 T 19-04-2016 AMED_5775 6fae1378c8d22ae9da00f677d869a954 579 PANTHER PTHR36848 46 316 9.7E-40 T 19-04-2016 AMED_8733 a9bce191007fa0ed99e126c1aa5a9f70 116 ProDom PD026347 LSR2-LIKE LSR2 ANTIGEN IMMUNE PRECURSOR RESPONSE SIGNAL PLASMID LYSYL GP61 1 114 6.0E-30 T 19-04-2016 IPR024412 Lsr2 AMED_8733 a9bce191007fa0ed99e126c1aa5a9f70 116 Pfam PF11774 Lsr2 1 114 1.5E-44 T 19-04-2016 IPR024412 Lsr2 AMED_3606 7f654d622fc19e234983d3e151c25499 161 SUPERFAMILY SSF54427 5 127 6.36E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_3606 7f654d622fc19e234983d3e151c25499 161 Pfam PF13474 SnoaL-like domain 7 126 1.2E-20 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_3606 7f654d622fc19e234983d3e151c25499 161 Gene3D G3DSA:3.10.450.50 4 123 3.5E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_5112 f6c26a2e1cb1cd05ef9e82b6e5e0bdb9 421 PANTHER PTHR32507 1 412 1.9E-45 T 19-04-2016 AMED_5112 f6c26a2e1cb1cd05ef9e82b6e5e0bdb9 421 PANTHER PTHR32507:SF12 1 412 1.9E-45 T 19-04-2016 AMED_5112 f6c26a2e1cb1cd05ef9e82b6e5e0bdb9 421 Pfam PF00999 Sodium/hydrogen exchanger family 13 406 4.6E-32 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMED_2401 060a7cd74db9b1701f9b378b5feb307e 325 Pfam PF04228 Putative neutral zinc metallopeptidase 136 316 4.8E-12 T 19-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMED_5704 f91c183b68d763c3bead7ae5a70c086a 166 Pfam PF07883 Cupin domain 65 133 5.6E-16 T 19-04-2016 IPR013096 Cupin 2, conserved barrel AMED_5704 f91c183b68d763c3bead7ae5a70c086a 166 Gene3D G3DSA:2.60.120.10 49 147 3.5E-24 T 19-04-2016 IPR014710 RmlC-like jelly roll fold AMED_5704 f91c183b68d763c3bead7ae5a70c086a 166 SUPERFAMILY SSF51182 28 137 2.41E-22 T 19-04-2016 IPR011051 RmlC-like cupin domain AMED_2356 c9d41a508623c4a833ce662bccddd0cf 283 PANTHER PTHR10245 1 279 3.8E-30 T 19-04-2016 AMED_2356 c9d41a508623c4a833ce662bccddd0cf 283 PANTHER PTHR10245:SF7 1 279 3.8E-30 T 19-04-2016 AMED_2356 c9d41a508623c4a833ce662bccddd0cf 283 Gene3D G3DSA:1.10.260.40 15 60 4.7E-9 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2356 c9d41a508623c4a833ce662bccddd0cf 283 SUPERFAMILY SSF47413 15 61 1.32E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2356 c9d41a508623c4a833ce662bccddd0cf 283 Pfam PF13560 Helix-turn-helix domain 12 72 4.8E-9 T 19-04-2016 AMED_2356 c9d41a508623c4a833ce662bccddd0cf 283 SMART SM00530 15 69 1.0E-7 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMED_7223 5c51079ad6966791ac258c96396302e9 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.4E-14 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7223 5c51079ad6966791ac258c96396302e9 231 Gene3D G3DSA:1.10.10.60 9 45 3.0E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7223 5c51079ad6966791ac258c96396302e9 231 Gene3D G3DSA:1.10.357.10 64 199 1.6E-38 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7223 5c51079ad6966791ac258c96396302e9 231 SUPERFAMILY SSF48498 85 197 1.78E-17 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_7223 5c51079ad6966791ac258c96396302e9 231 Gene3D G3DSA:1.10.10.60 46 63 3.0E-6 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_7223 5c51079ad6966791ac258c96396302e9 231 PANTHER PTHR30055 1 197 1.5E-26 T 19-04-2016 AMED_7223 5c51079ad6966791ac258c96396302e9 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7223 5c51079ad6966791ac258c96396302e9 231 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.0E-10 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_7223 5c51079ad6966791ac258c96396302e9 231 SUPERFAMILY SSF46689 10 86 2.21E-17 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4251 2ac45046ce375a17a3602e38a95744d7 302 PANTHER PTHR34820 7 302 1.5E-23 T 19-04-2016 AMED_4251 2ac45046ce375a17a3602e38a95744d7 302 Pfam PF05425 Copper resistance protein D 191 295 3.8E-15 T 19-04-2016 IPR008457 Copper resistance protein D GO:0016021 AMED_5279 6f5836ebf037f628a2978adcacff5135 252 PANTHER PTHR11019 26 214 3.3E-35 T 19-04-2016 AMED_5279 6f5836ebf037f628a2978adcacff5135 252 Pfam PF01965 DJ-1/PfpI family 24 190 3.1E-26 T 19-04-2016 IPR002818 DJ-1/PfpI AMED_5279 6f5836ebf037f628a2978adcacff5135 252 Gene3D G3DSA:3.40.50.880 25 226 3.9E-62 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5279 6f5836ebf037f628a2978adcacff5135 252 PANTHER PTHR11019:SF131 26 214 3.3E-35 T 19-04-2016 AMED_5279 6f5836ebf037f628a2978adcacff5135 252 SUPERFAMILY SSF52317 24 213 7.13E-48 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMED_5809 483f7917819dacc45947b8ca9cf63166 236 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 4 216 1.7E-49 T 19-04-2016 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 AMED_5809 483f7917819dacc45947b8ca9cf63166 236 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 4 45 2.3E-8 T 19-04-2016 IPR013422 CRISPR-associated protein Cas5, N-terminal AMED_5809 483f7917819dacc45947b8ca9cf63166 236 TIGRFAM TIGR01868 casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI 4 218 1.2E-44 T 19-04-2016 IPR010147 CRISPR-associated protein, CasD GO:0003723|GO:0051607 AMED_5306 8564c7c4e48386c6fd1296ef466b3156 106 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 101 7.3E-14 T 19-04-2016 IPR008407 Branched-chain amino acid transport, AzlD AMED_4182 bd722bee9a47cc44b880067817679c2e 1106 Pfam PF06013 Proteins of 100 residues with WXG 182 258 9.7E-8 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_4182 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 527 545 7.3E-6 T 19-04-2016 AMED_4182 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 495 505 7.3E-6 T 19-04-2016 AMED_4182 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 403 414 7.3E-6 T 19-04-2016 AMED_4182 bd722bee9a47cc44b880067817679c2e 1106 PRINTS PR01228 Eggshell protein signature 470 485 7.3E-6 T 19-04-2016 AMED_4182 bd722bee9a47cc44b880067817679c2e 1106 SUPERFAMILY SSF140453 182 259 1.31E-6 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_3584 f95402ac9c1e951b6d47d963ff447450 433 Pfam PF08811 Protein of unknown function (DUF1800) 13 427 1.5E-92 T 19-04-2016 IPR014917 Protein of unknown function DUF1800 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 Gene3D G3DSA:1.10.630.10 350 554 4.0E-42 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 PRINTS PR00359 B-class P450 signature 506 517 8.1E-19 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 PRINTS PR00359 B-class P450 signature 448 475 8.1E-19 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 PRINTS PR00359 B-class P450 signature 431 442 8.1E-19 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 PRINTS PR00359 B-class P450 signature 476 491 8.1E-19 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 PRINTS PR00359 B-class P450 signature 497 506 8.1E-19 T 19-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 499 508 - T 19-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 PANTHER PTHR11712 391 558 3.2E-31 T 19-04-2016 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 SUPERFAMILY SSF48264 377 555 5.24E-36 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_5524 c2068c3f673196bc1eeb9eb2e65be6a1 588 Pfam PF00067 Cytochrome P450 417 524 8.8E-13 T 19-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 AMED_0021 407f2fc51f0296c9720e4ec840fb26a5 125 Gene3D G3DSA:3.10.180.10 5 125 1.2E-22 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_0021 407f2fc51f0296c9720e4ec840fb26a5 125 SUPERFAMILY SSF54593 6 124 4.37E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_2826 c3859a27e580b3f955e475455a070def 261 Pfam PF01061 ABC-2 type transporter 48 230 2.2E-16 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_2826 c3859a27e580b3f955e475455a070def 261 PANTHER PTHR30294 29 256 1.4E-23 T 19-04-2016 AMED_2826 c3859a27e580b3f955e475455a070def 261 PIRSF PIRSF006648 12 260 3.1E-24 T 19-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AMED_2202 5805b9afe34186000f991713b2a94868 388 Pfam PF00355 Rieske [2Fe-2S] domain 291 360 8.4E-11 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2202 5805b9afe34186000f991713b2a94868 388 SUPERFAMILY SSF50022 304 386 1.57E-25 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2202 5805b9afe34186000f991713b2a94868 388 Gene3D G3DSA:2.102.10.10 171 197 1.2E-43 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2202 5805b9afe34186000f991713b2a94868 388 Gene3D G3DSA:2.102.10.10 235 386 1.2E-43 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_2202 5805b9afe34186000f991713b2a94868 388 PANTHER PTHR10134 276 372 2.7E-16 T 19-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 AMED_2256 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.4E-13 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_2256 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 SUPERFAMILY SSF46689 3 62 2.05E-16 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2256 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 PANTHER PTHR30055 2 184 5.7E-13 T 19-04-2016 AMED_2256 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 Gene3D G3DSA:1.10.10.60 4 59 9.3E-19 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2256 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 Gene3D G3DSA:1.10.357.10 63 186 3.4E-18 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2256 87c09cf6d2a7f3cf9db8793d5c13ef4a 186 SUPERFAMILY SSF48498 77 183 4.8E-11 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_3977 ea1cf8a151bcf3eaad7167e951a682eb 355 PANTHER PTHR32196 51 350 1.0E-47 T 19-04-2016 AMED_3977 ea1cf8a151bcf3eaad7167e951a682eb 355 SUPERFAMILY SSF53822 57 349 1.38E-58 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3977 ea1cf8a151bcf3eaad7167e951a682eb 355 Gene3D G3DSA:3.40.50.2300 174 349 4.6E-28 T 19-04-2016 AMED_3977 ea1cf8a151bcf3eaad7167e951a682eb 355 PANTHER PTHR32196:SF9 51 350 1.0E-47 T 19-04-2016 AMED_3977 ea1cf8a151bcf3eaad7167e951a682eb 355 Gene3D G3DSA:3.40.50.2300 54 173 2.3E-30 T 19-04-2016 AMED_3977 ea1cf8a151bcf3eaad7167e951a682eb 355 Pfam PF13407 Periplasmic binding protein domain 61 319 2.0E-38 T 19-04-2016 IPR025997 Periplasmic binding protein AMED_9254 f14f610126a4f3c616b4e5abb193145e 234 SUPERFAMILY SSF69318 33 215 4.84E-8 T 19-04-2016 AMED_0420 6473eb63c0a24a61790e53f15d0c2ce1 432 PANTHER PTHR38442 9 432 3.1E-126 T 19-04-2016 AMED_0420 6473eb63c0a24a61790e53f15d0c2ce1 432 Pfam PF04286 Protein of unknown function (DUF445) 68 430 1.5E-108 T 19-04-2016 IPR007383 Protein of unknown function DUF445 AMED_4459 9e3400e1537bf4c8dbb805cfd22107cb 340 Pfam PF13556 PucR C-terminal helix-turn-helix domain 275 329 3.7E-12 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_4459 9e3400e1537bf4c8dbb805cfd22107cb 340 Gene3D G3DSA:1.10.10.10 273 314 3.0E-4 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_8428 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 Gene3D G3DSA:1.10.357.10 1 192 1.0E-22 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_8428 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 SUPERFAMILY SSF46689 4 78 1.13E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_8428 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 59 7.4E-6 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_8428 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 PANTHER PTHR30328 2 191 4.9E-12 T 19-04-2016 AMED_8428 c8d3d6e849a1b9e8e496a2b4d2a622c9 193 SUPERFAMILY SSF48498 91 190 8.22E-6 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_5810 5641800270be63ae18be320f2b22e4c4 376 Pfam PF09344 CT1975-like protein 3 363 1.2E-118 T 19-04-2016 IPR010148 CRISPR-associated protein, CT1975 AMED_5810 5641800270be63ae18be320f2b22e4c4 376 TIGRFAM TIGR01869 casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI 3 332 1.7E-97 T 19-04-2016 IPR010148 CRISPR-associated protein, CT1975 AMED_3163 60da7d0edb6606ca343f285613f2fa2a 527 SUPERFAMILY SSF53822 106 387 2.06E-14 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3163 60da7d0edb6606ca343f285613f2fa2a 527 SUPERFAMILY SSF53822 433 499 2.06E-14 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_3163 60da7d0edb6606ca343f285613f2fa2a 527 Gene3D G3DSA:3.40.50.2300 103 254 3.7E-14 T 19-04-2016 AMED_3163 60da7d0edb6606ca343f285613f2fa2a 527 Gene3D G3DSA:3.40.50.2300 418 490 3.7E-14 T 19-04-2016 AMED_0042 d10698b2044a356f7a8dca5d3bb35e50 244 PANTHER PTHR30294 7 244 3.0E-26 T 19-04-2016 AMED_0042 d10698b2044a356f7a8dca5d3bb35e50 244 Pfam PF01061 ABC-2 type transporter 7 203 1.9E-23 T 19-04-2016 IPR013525 ABC-2 type transporter GO:0016020 AMED_3851 c6947e1bbc832efee035e108b0dacebf 136 SUPERFAMILY SSF50249 12 113 3.26E-11 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMED_3851 c6947e1bbc832efee035e108b0dacebf 136 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 40 108 6.2E-16 T 19-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal AMED_1367 e048a006cefdab4864408be879f543fc 314 PANTHER PTHR11935 36 218 7.5E-13 T 19-04-2016 AMED_1367 e048a006cefdab4864408be879f543fc 314 Pfam PF00753 Metallo-beta-lactamase superfamily 28 215 6.0E-13 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1367 e048a006cefdab4864408be879f543fc 314 Gene3D G3DSA:3.60.15.10 13 242 1.4E-35 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1367 e048a006cefdab4864408be879f543fc 314 SMART SM00849 30 215 3.4E-12 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_1367 e048a006cefdab4864408be879f543fc 314 SUPERFAMILY SSF56281 25 245 1.02E-36 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMED_2196 09c98ba023ff5ca8ae9d324a75a45edc 320 SUPERFAMILY SSF103481 199 296 8.24E-15 T 19-04-2016 AMED_2196 09c98ba023ff5ca8ae9d324a75a45edc 320 SUPERFAMILY SSF103481 51 153 1.14E-12 T 19-04-2016 AMED_2196 09c98ba023ff5ca8ae9d324a75a45edc 320 PANTHER PTHR22911 26 291 6.5E-36 T 19-04-2016 AMED_2196 09c98ba023ff5ca8ae9d324a75a45edc 320 Pfam PF00892 EamA-like transporter family 164 291 2.8E-18 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_2196 09c98ba023ff5ca8ae9d324a75a45edc 320 Pfam PF00892 EamA-like transporter family 27 150 2.2E-11 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_0144 54b7dd5d7821a3265cb710c16696ac2a 104 PANTHER PTHR34129 16 98 1.4E-13 T 19-04-2016 AMED_0144 54b7dd5d7821a3265cb710c16696ac2a 104 SUPERFAMILY SSF56399 4 100 1.73E-21 T 19-04-2016 AMED_0144 54b7dd5d7821a3265cb710c16696ac2a 104 Pfam PF06108 Protein of unknown function (DUF952) 3 84 1.3E-20 T 19-04-2016 IPR009297 Protein of unknown function DUF952 AMED_2150 5086e456201b3a043523c248775b3c52 303 PANTHER PTHR42110:SF1 6 294 2.3E-52 T 19-04-2016 AMED_2150 5086e456201b3a043523c248775b3c52 303 PANTHER PTHR42110 6 294 2.3E-52 T 19-04-2016 AMED_2150 5086e456201b3a043523c248775b3c52 303 Pfam PF06089 L-asparaginase II 7 294 8.8E-102 T 19-04-2016 IPR010349 L-asparaginase II AMED_1760 57edda857da7f9167d4c6663c8c4e0e4 72 SUPERFAMILY SSF54654 16 62 5.1E-6 T 19-04-2016 IPR000864 Proteinase inhibitor I13, potato inhibitor I GO:0004867|GO:0009611 AMED_1760 57edda857da7f9167d4c6663c8c4e0e4 72 Gene3D G3DSA:3.30.10.10 17 66 6.7E-7 T 19-04-2016 AMED_7617 4a500e5a1551d403535455920818418f 271 Pfam PF02405 Permease MlaE 54 258 1.1E-58 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_7617 4a500e5a1551d403535455920818418f 271 PANTHER PTHR30188:SF1 10 271 3.0E-125 T 19-04-2016 AMED_7617 4a500e5a1551d403535455920818418f 271 PANTHER PTHR30188 10 271 3.0E-125 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 SUPERFAMILY SSF53474 2 34 1.25E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 SUPERFAMILY SSF53474 66 170 1.25E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 PANTHER PTHR34853 2 201 2.9E-36 T 19-04-2016 AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 Gene3D G3DSA:3.40.50.1820 91 92 1.4E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 Gene3D G3DSA:3.40.50.1820 131 191 1.4E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 Gene3D G3DSA:3.40.50.1820 2 35 1.4E-7 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_3371 0e013db07d75a70d32f8d8166c4ee24f 201 Pfam PF03583 Secretory lipase 2 197 2.1E-36 T 19-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 AMED_0477 8ea02f1a299917ea231e89dc817a68e6 78 Gene3D G3DSA:3.40.30.10 4 78 2.2E-25 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_0477 8ea02f1a299917ea231e89dc817a68e6 78 SUPERFAMILY SSF52833 4 77 2.24E-17 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_0477 8ea02f1a299917ea231e89dc817a68e6 78 Pfam PF05768 Glutaredoxin-like domain (DUF836) 5 77 1.1E-16 T 19-04-2016 IPR008554 Glutaredoxin-like AMED_6500 ae04bca1e8b68ca6e0ba2027cfb497ca 462 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 384 462 2.0E-23 T 19-04-2016 AMED_6500 ae04bca1e8b68ca6e0ba2027cfb497ca 462 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 1 89 2.0E-10 T 19-04-2016 AMED_4227 277dc49840b730de4a5faddc4a6f784e 200 PANTHER PTHR30086 1 197 1.9E-68 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_4227 277dc49840b730de4a5faddc4a6f784e 200 Pfam PF01810 LysE type translocator 13 197 4.4E-39 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_4227 277dc49840b730de4a5faddc4a6f784e 200 PANTHER PTHR30086:SF0 1 197 1.9E-68 T 19-04-2016 AMED_7526 e8f922f4aefc9c5d9574d237fec33730 159 Pfam PF11188 Protein of unknown function (DUF2975) 37 159 2.0E-30 T 19-04-2016 IPR021354 Protein of unknown function DUF2975 AMED_6233 966b55f2be26fd979726d6620ab6ea49 407 SUPERFAMILY SSF103473 13 403 1.57E-40 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_6233 966b55f2be26fd979726d6620ab6ea49 407 Gene3D G3DSA:1.20.1250.20 13 203 2.4E-9 T 19-04-2016 AMED_6233 966b55f2be26fd979726d6620ab6ea49 407 Gene3D G3DSA:1.20.1250.20 224 398 7.4E-21 T 19-04-2016 AMED_6233 966b55f2be26fd979726d6620ab6ea49 407 Pfam PF05977 Transmembrane secretion effector 15 391 6.2E-26 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_6233 966b55f2be26fd979726d6620ab6ea49 407 PANTHER PTHR23513 13 407 1.2E-53 T 19-04-2016 AMED_8996 9522b40a752b7e4ae1f722f8b970ef4f 176 Pfam PF00857 Isochorismatase family 5 171 7.5E-26 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_8996 9522b40a752b7e4ae1f722f8b970ef4f 176 Gene3D G3DSA:3.40.50.850 3 175 2.9E-32 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_8996 9522b40a752b7e4ae1f722f8b970ef4f 176 PANTHER PTHR11080 1 175 2.8E-19 T 19-04-2016 AMED_8996 9522b40a752b7e4ae1f722f8b970ef4f 176 SUPERFAMILY SSF52499 4 175 1.44E-29 T 19-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AMED_7143 224f2f96459018e68ac4117320de72d4 396 Pfam PF14759 Reductase C-terminal 326 388 7.7E-9 T 19-04-2016 IPR028202 Reductase, C-terminal AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 239 253 5.5E-17 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 5.5E-17 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 5.5E-17 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 177 5.5E-17 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PANTHER PTHR22912:SF180 1 371 9.3E-82 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PANTHER PTHR22912 1 371 9.3E-82 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 SUPERFAMILY SSF55424 318 394 4.94E-19 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMED_7143 224f2f96459018e68ac4117320de72d4 396 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 307 4.1E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7143 224f2f96459018e68ac4117320de72d4 396 Gene3D G3DSA:3.50.50.60 151 320 2.2E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7143 224f2f96459018e68ac4117320de72d4 396 Gene3D G3DSA:3.30.390.30 326 389 2.6E-14 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMED_7143 224f2f96459018e68ac4117320de72d4 396 Gene3D G3DSA:3.50.50.60 11 120 7.3E-26 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 9.3E-18 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 254 9.3E-18 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 9.3E-18 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 9.3E-18 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 9.3E-18 T 19-04-2016 AMED_7143 224f2f96459018e68ac4117320de72d4 396 SUPERFAMILY SSF51905 12 196 5.38E-33 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_7143 224f2f96459018e68ac4117320de72d4 396 SUPERFAMILY SSF51905 151 316 9.39E-22 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMED_1173 175c792e4c2ab77937e0cb1592fac1c9 245 PANTHER PTHR39082 4 245 8.3E-21 T 19-04-2016 AMED_1173 175c792e4c2ab77937e0cb1592fac1c9 245 Pfam PF02591 C4-type zinc ribbon domain 203 237 1.2E-11 T 19-04-2016 IPR003743 C4-type zinc ribbon domain AMED_2165 e8877ac081a5b4644a43dd657d162a98 207 Gene3D G3DSA:1.20.144.10 31 189 2.9E-16 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2165 e8877ac081a5b4644a43dd657d162a98 207 SUPERFAMILY SSF48317 6 194 5.89E-21 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2165 e8877ac081a5b4644a43dd657d162a98 207 SMART SM00014 83 191 0.0054 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2165 e8877ac081a5b4644a43dd657d162a98 207 Pfam PF01569 PAP2 superfamily 109 190 2.8E-7 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_8566 cfebc527c7d6a0554f1e143ec48a4364 204 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 108 197 2.0E-13 T 19-04-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain AMED_8942 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 227 239 1.5E-10 T 19-04-2016 AMED_8942 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 166 180 1.5E-10 T 19-04-2016 AMED_8942 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 261 285 1.5E-10 T 19-04-2016 AMED_8942 814606ab69d55d81332a45bd9c621929 564 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 144 160 1.5E-10 T 19-04-2016 AMED_8942 814606ab69d55d81332a45bd9c621929 564 SUPERFAMILY SSF53335 128 357 5.92E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8942 814606ab69d55d81332a45bd9c621929 564 Gene3D G3DSA:3.40.50.150 143 315 5.0E-28 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8942 814606ab69d55d81332a45bd9c621929 564 PANTHER PTHR30408 166 284 4.7E-14 T 19-04-2016 AMED_8942 814606ab69d55d81332a45bd9c621929 564 PANTHER PTHR30408:SF8 166 284 4.7E-14 T 19-04-2016 AMED_8942 814606ab69d55d81332a45bd9c621929 564 Pfam PF02384 N-6 DNA Methylase 148 314 4.4E-26 T 19-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMED_8741 8696762efc772f7ab5b4d28e3a6d1aad 808 PANTHER PTHR10780 350 491 5.1E-12 T 19-04-2016 AMED_8741 8696762efc772f7ab5b4d28e3a6d1aad 808 PANTHER PTHR10780:SF19 350 491 5.1E-12 T 19-04-2016 AMED_2107 828d5b25cb6b987c7080ab3f11cdda7f 258 Pfam PF05552 Conserved TM helix 101 146 2.8E-10 T 19-04-2016 IPR008910 Conserved TM helix AMED_2107 828d5b25cb6b987c7080ab3f11cdda7f 258 Pfam PF05552 Conserved TM helix 11 53 1.7E-11 T 19-04-2016 IPR008910 Conserved TM helix AMED_0201 0eeb087095e54180a555ffe0851fec89 309 SUPERFAMILY SSF51735 2 306 6.57E-87 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0201 0eeb087095e54180a555ffe0851fec89 309 PANTHER PTHR10366 5 305 4.9E-86 T 19-04-2016 AMED_0201 0eeb087095e54180a555ffe0851fec89 309 Gene3D G3DSA:3.40.50.720 4 305 2.5E-76 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_0201 0eeb087095e54180a555ffe0851fec89 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 242 2.1E-49 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_0201 0eeb087095e54180a555ffe0851fec89 309 PANTHER PTHR10366:SF466 5 305 4.9E-86 T 19-04-2016 AMED_0933 e71d9794c9a568180828f9cda47dc357 178 Pfam PF08044 Domain of unknown function (DUF1707) 9 61 9.0E-20 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_8742 dcce4911a50f421637831e3cb4eb8df8 153 Pfam PF11377 Protein of unknown function (DUF3180) 9 140 1.8E-36 T 19-04-2016 IPR021517 Protein of unknown function DUF3180 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 Pfam PF02653 Branched-chain amino acid transport system / permease component 84 471 5.4E-29 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 PANTHER PTHR32196:SF21 185 263 6.5E-60 T 19-04-2016 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 PANTHER PTHR32196:SF21 24 131 6.5E-60 T 19-04-2016 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 PANTHER PTHR32196:SF21 327 481 6.5E-60 T 19-04-2016 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 PANTHER PTHR32196 185 263 6.5E-60 T 19-04-2016 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 PANTHER PTHR32196 24 131 6.5E-60 T 19-04-2016 AMED_2584 988347a075d3c2e1d730441e938a6fcc 487 PANTHER PTHR32196 327 481 6.5E-60 T 19-04-2016 AMED_0189 04b839f77cc9601716405f829a97470d 388 SUPERFAMILY SSF52440 174 283 1.01E-32 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMED_0189 04b839f77cc9601716405f829a97470d 388 PANTHER PTHR30094:SF0 9 388 1.3E-93 T 19-04-2016 AMED_0189 04b839f77cc9601716405f829a97470d 388 PANTHER PTHR30094 9 388 1.3E-93 T 19-04-2016 AMED_0189 04b839f77cc9601716405f829a97470d 388 SUPERFAMILY SSF56059 4 167 2.75E-70 T 19-04-2016 AMED_0189 04b839f77cc9601716405f829a97470d 388 SUPERFAMILY SSF56059 270 384 2.75E-70 T 19-04-2016 AMED_0189 04b839f77cc9601716405f829a97470d 388 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 385 1.4E-142 T 19-04-2016 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain AMED_6844 9cce6aa4df19b1e8e7357ede471e4b9d 154 PANTHER PTHR10681 2 152 1.5E-44 T 19-04-2016 AMED_6844 9cce6aa4df19b1e8e7357ede471e4b9d 154 Gene3D G3DSA:3.40.30.10 2 152 5.7E-45 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6844 9cce6aa4df19b1e8e7357ede471e4b9d 154 PIRSF PIRSF000239 1 152 4.2E-21 T 19-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 AMED_6844 9cce6aa4df19b1e8e7357ede471e4b9d 154 PANTHER PTHR10681:SF121 2 152 1.5E-44 T 19-04-2016 AMED_6844 9cce6aa4df19b1e8e7357ede471e4b9d 154 SUPERFAMILY SSF52833 1 152 7.48E-42 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_6844 9cce6aa4df19b1e8e7357ede471e4b9d 154 Pfam PF00578 AhpC/TSA family 6 130 4.4E-35 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7504 95680958fc244e292bd05b9520911ed0 161 Pfam PF02627 Carboxymuconolactone decarboxylase family 28 102 5.6E-5 T 19-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMED_7504 95680958fc244e292bd05b9520911ed0 161 Gene3D G3DSA:1.20.1290.10 21 151 7.4E-33 T 19-04-2016 IPR029032 AhpD-like AMED_7504 95680958fc244e292bd05b9520911ed0 161 SUPERFAMILY SSF69118 21 151 1.92E-26 T 19-04-2016 IPR029032 AhpD-like AMED_8159 db88c1326cc3878ac936c054db9463b9 760 SUPERFAMILY SSF52540 49 118 2.43E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8159 db88c1326cc3878ac936c054db9463b9 760 SUPERFAMILY SSF52540 223 373 2.43E-15 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8159 db88c1326cc3878ac936c054db9463b9 760 Gene3D G3DSA:3.40.50.300 68 128 2.1E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8159 db88c1326cc3878ac936c054db9463b9 760 Gene3D G3DSA:3.40.50.300 249 334 2.1E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_8159 db88c1326cc3878ac936c054db9463b9 760 SMART SM00382 66 321 1.5E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMED_0520 a3a4129097a99687f7267b1984f6812f 139 PANTHER PTHR11058 12 139 5.9E-41 T 19-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 AMED_0520 a3a4129097a99687f7267b1984f6812f 139 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 19 139 17.077 T 19-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMED_0520 a3a4129097a99687f7267b1984f6812f 139 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 38 138 7.6E-31 T 19-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 AMED_0520 a3a4129097a99687f7267b1984f6812f 139 PANTHER PTHR11058:SF5 12 139 5.9E-41 T 19-04-2016 AMED_1521 35213853f5fbc21e89da069a09379d11 255 Pfam PF14023 Protein of unknown function (DUF4239) 46 250 8.8E-18 T 19-04-2016 IPR025333 Protein of unknown function DUF4239 AMED_6657 34a4400ffa6e5e2426c067684ba24244 52 SUPERFAMILY SSF57829 7 38 5.49E-6 T 19-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMED_6657 34a4400ffa6e5e2426c067684ba24244 52 Gene3D G3DSA:2.20.25.30 6 39 2.9E-4 T 19-04-2016 IPR011331 Ribosomal protein L37ae/L37e GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMED_2239 832436bc8910824ad532b7c16c6b5d21 256 SUPERFAMILY SSF140453 4 99 1.29E-6 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_0429 afdc1378f787bd37d86235bc4f7f7ae9 180 Gene3D G3DSA:3.90.960.10 23 175 1.5E-27 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_0429 afdc1378f787bd37d86235bc4f7f7ae9 180 Pfam PF04073 Aminoacyl-tRNA editing domain 45 167 9.0E-19 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_0429 afdc1378f787bd37d86235bc4f7f7ae9 180 PANTHER PTHR30411 4 176 6.8E-39 T 19-04-2016 AMED_0429 afdc1378f787bd37d86235bc4f7f7ae9 180 PANTHER PTHR30411:SF1 4 176 6.8E-39 T 19-04-2016 AMED_0429 afdc1378f787bd37d86235bc4f7f7ae9 180 SUPERFAMILY SSF55826 43 174 1.44E-23 T 19-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMED_8147 a4474c4912f28c56a110dca984f7dec8 166 Pfam PF07291 Methylamine utilisation protein MauE 10 153 7.0E-9 T 19-04-2016 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 UniPathway: UPA00895 AMED_0380 5bbecd7d0d9efe54e6efb24d74d3c93b 116 Pfam PF03795 YCII-related domain 1 113 3.7E-10 T 19-04-2016 IPR005545 YCII-related AMED_0380 5bbecd7d0d9efe54e6efb24d74d3c93b 116 Gene3D G3DSA:3.30.70.1060 1 113 2.5E-29 T 19-04-2016 AMED_0380 5bbecd7d0d9efe54e6efb24d74d3c93b 116 PANTHER PTHR35174 2 116 7.7E-16 T 19-04-2016 AMED_0380 5bbecd7d0d9efe54e6efb24d74d3c93b 116 SUPERFAMILY SSF54909 1 113 4.66E-21 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_8122 199ff1c20d1392ce1f321c34fb991bf5 301 PANTHER PTHR30193:SF6 4 299 3.8E-95 T 19-04-2016 AMED_8122 199ff1c20d1392ce1f321c34fb991bf5 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 297 4.8E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8122 199ff1c20d1392ce1f321c34fb991bf5 301 PANTHER PTHR30193 4 299 3.8E-95 T 19-04-2016 AMED_8122 199ff1c20d1392ce1f321c34fb991bf5 301 Gene3D G3DSA:1.10.3720.10 62 296 1.9E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8122 199ff1c20d1392ce1f321c34fb991bf5 301 SUPERFAMILY SSF161098 57 288 8.9E-57 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6567 290a934bbb1fd89ab2621d415b4a7d31 352 Pfam PF13515 Fusaric acid resistance protein-like 27 151 3.1E-12 T 19-04-2016 AMED_7115 86402e499efae14efa29b85a284af308 146 PANTHER PTHR22769 20 146 4.5E-18 T 19-04-2016 AMED_7115 86402e499efae14efa29b85a284af308 146 PRINTS PR00502 NUDIX hydrolase family signature 38 52 6.5E-9 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7115 86402e499efae14efa29b85a284af308 146 PRINTS PR00502 NUDIX hydrolase family signature 52 67 6.5E-9 T 19-04-2016 IPR020476 NUDIX hydrolase AMED_7115 86402e499efae14efa29b85a284af308 146 Gene3D G3DSA:3.90.79.10 16 139 3.5E-25 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7115 86402e499efae14efa29b85a284af308 146 Pfam PF00293 NUDIX domain 20 119 1.8E-15 T 19-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 AMED_7115 86402e499efae14efa29b85a284af308 146 SUPERFAMILY SSF55811 13 139 4.47E-26 T 19-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 AMED_7115 86402e499efae14efa29b85a284af308 146 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 19-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMED_7789 94642d5f80c4594028e444587874c20d 422 Pfam PF04188 Mannosyltransferase (PIG-V) 77 221 1.3E-5 T 19-04-2016 IPR007315 GPI mannosyltransferase 2 GO:0004584|GO:0006506 KEGG: 00051+2.4.1.-|KEGG: 00512+2.4.1.-|KEGG: 00513+2.4.1.-|KEGG: 00514+2.4.1.-|KEGG: 00522+2.4.1.-|KEGG: 00533+2.4.1.-|KEGG: 00540+2.4.1.-|KEGG: 00550+2.4.1.-|KEGG: 00561+2.4.1.-|KEGG: 00563+2.4.1.-|KEGG: 00600+2.4.1.-|KEGG: 00601+2.4.1.-|KEGG: 00603+2.4.1.-|KEGG: 00604+2.4.1.-|KEGG: 00906+2.4.1.-|KEGG: 00908+2.4.1.-|KEGG: 00941+2.4.1.-|KEGG: 00942+2.4.1.-|KEGG: 00944+2.4.1.-|KEGG: 00945+2.4.1.-|KEGG: 00965+2.4.1.-|UniPathway: UPA00196 AMED_0604 3cb1ca04534a28b36ac64d4ce1c7567d 441 PANTHER PTHR33371 1 360 6.4E-94 T 19-04-2016 AMED_0604 3cb1ca04534a28b36ac64d4ce1c7567d 441 PANTHER PTHR33371:SF7 1 360 6.4E-94 T 19-04-2016 AMED_0604 3cb1ca04534a28b36ac64d4ce1c7567d 441 Pfam PF02470 MlaD protein 36 111 6.2E-10 T 19-04-2016 IPR003399 Mce/MlaD AMED_0604 3cb1ca04534a28b36ac64d4ce1c7567d 441 Pfam PF11887 Cholesterol uptake porter CUP1 of Mce4, putative 143 430 1.8E-75 T 19-04-2016 IPR024516 Mammalian cell entry, C-terminal AMED_0604 3cb1ca04534a28b36ac64d4ce1c7567d 441 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 292 3.0E-60 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_5572 b3726c3c9e6b0d896723bde632d2369f 300 Gene3D G3DSA:3.40.109.10 11 73 4.1E-14 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5572 b3726c3c9e6b0d896723bde632d2369f 300 Gene3D G3DSA:3.40.109.10 123 280 4.1E-14 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_5572 b3726c3c9e6b0d896723bde632d2369f 300 SUPERFAMILY SSF55469 115 280 1.06E-7 T 19-04-2016 IPR000415 Nitroreductase-like GO:0016491 AMED_7913 0c11e2a79dfffb4e7163ed40f0caa55a 351 Gene3D G3DSA:3.40.50.1820 42 347 7.5E-30 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7913 0c11e2a79dfffb4e7163ed40f0caa55a 351 SUPERFAMILY SSF53474 44 348 9.98E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_7913 0c11e2a79dfffb4e7163ed40f0caa55a 351 Pfam PF06850 PHB de-polymerase C-terminus 257 347 1.2E-4 T 19-04-2016 IPR009656 PHB de-polymerase, C-terminal AMED_7913 0c11e2a79dfffb4e7163ed40f0caa55a 351 PANTHER PTHR36837 43 348 3.2E-33 T 19-04-2016 AMED_2137 9480ea119458496d0b2d3ae88d8f821c 118 SUPERFAMILY SSF47413 11 76 1.28E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_2137 9480ea119458496d0b2d3ae88d8f821c 118 Gene3D G3DSA:1.10.260.40 11 73 3.4E-8 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_4437 39a7dc05488abd4892488b0e08c0d0ff 256 PANTHER PTHR33407 2 256 1.5E-91 T 19-04-2016 AMED_4437 39a7dc05488abd4892488b0e08c0d0ff 256 Pfam PF03211 Pectate lyase 29 231 1.3E-82 T 19-04-2016 IPR004898 Pectate lyase, catalytic GO:0005576|GO:0030570 KEGG: 00040+4.2.2.2 AMED_4437 39a7dc05488abd4892488b0e08c0d0ff 256 PANTHER PTHR33407:SF3 2 256 1.5E-91 T 19-04-2016 AMED_4437 39a7dc05488abd4892488b0e08c0d0ff 256 Gene3D G3DSA:2.160.20.10 41 255 1.7E-85 T 19-04-2016 IPR012334 Pectin lyase fold AMED_4437 39a7dc05488abd4892488b0e08c0d0ff 256 SUPERFAMILY SSF51126 41 217 6.28E-55 T 19-04-2016 IPR011050 Pectin lyase fold/virulence factor AMED_9013 80d21e5ea5c52a973471e4d0d88e3194 104 SUPERFAMILY SSF49464 29 81 1.02E-6 T 19-04-2016 IPR008969 Carboxypeptidase-like, regulatory domain AMED_9013 80d21e5ea5c52a973471e4d0d88e3194 104 Pfam PF07210 Protein of unknown function (DUF1416) 8 103 5.2E-39 T 19-04-2016 IPR010814 Protein of unknown function DUF1416 AMED_9013 80d21e5ea5c52a973471e4d0d88e3194 104 Gene3D G3DSA:2.60.40.10 29 85 4.7E-6 T 19-04-2016 IPR013783 Immunoglobulin-like fold AMED_6483 cc97f30d30fc1c80d39e62c1af0b2850 66 Pfam PF02426 Muconolactone delta-isomerase 14 50 2.5E-10 T 19-04-2016 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 AMED_6483 cc97f30d30fc1c80d39e62c1af0b2850 66 SUPERFAMILY SSF54909 1 51 1.29E-8 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_4643 6d38768e5d3e3f89ccd6dfa0a6ad66a9 98 SUPERFAMILY SSF51679 15 85 8.41E-5 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_4643 6d38768e5d3e3f89ccd6dfa0a6ad66a9 98 Gene3D G3DSA:3.20.20.30 16 74 2.8E-5 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_8530 644e768b1670902322723e406928e22f 259 Pfam PF05331 Protein of unknown function (DUF742) 147 258 3.3E-29 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_8530 644e768b1670902322723e406928e22f 259 PANTHER PTHR36221 126 259 2.3E-29 T 19-04-2016 AMED_0742 0f65edb4698d85fcf4f4c1f060ff5823 359 Gene3D G3DSA:3.40.50.1820 46 341 7.5E-56 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0742 0f65edb4698d85fcf4f4c1f060ff5823 359 SUPERFAMILY SSF53474 39 340 6.8E-51 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_0742 0f65edb4698d85fcf4f4c1f060ff5823 359 PANTHER PTHR10992 45 341 1.2E-44 T 19-04-2016 AMED_0742 0f65edb4698d85fcf4f4c1f060ff5823 359 Pfam PF12697 Alpha/beta hydrolase family 74 332 6.9E-22 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMED_0161 937fc19302d389e49ab978564a883bfa 195 Pfam PF01169 Uncharacterized protein family UPF0016 112 186 1.6E-18 T 19-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 AMED_0161 937fc19302d389e49ab978564a883bfa 195 Pfam PF01169 Uncharacterized protein family UPF0016 6 75 3.7E-14 T 19-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 AMED_0161 937fc19302d389e49ab978564a883bfa 195 PANTHER PTHR12608 4 195 1.3E-16 T 19-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 AMED_4561 3c3c351e8b59e3af52949b63ee75e4e0 162 Pfam PF13563 2'-5' RNA ligase superfamily 12 147 2.2E-11 T 19-04-2016 AMED_3175 3048f1012986d8b97a13948bb497ee3e 122 Gene3D G3DSA:3.30.450.30 2 121 1.3E-22 T 19-04-2016 AMED_3175 3048f1012986d8b97a13948bb497ee3e 122 Pfam PF03259 Roadblock/LC7 domain 8 95 5.4E-11 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_3175 3048f1012986d8b97a13948bb497ee3e 122 SMART SM00960 7 96 2.7E-11 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_3175 3048f1012986d8b97a13948bb497ee3e 122 SUPERFAMILY SSF103196 3 120 3.31E-20 T 19-04-2016 AMED_8488 8e66ef560f7f46191d5d84abe1dd1ee9 158 ProDom PD034580 PRECURSOR SIGNAL EXPORTED MB0899C RV0875C/MT0898 MLCB57.27C POSSIBLE 27 156 2.0E-5 T 19-04-2016 IPR024495 Protein of unknown function DUF2771 AMED_8488 8e66ef560f7f46191d5d84abe1dd1ee9 158 Pfam PF10969 Protein of unknown function (DUF2771) 21 155 1.2E-16 T 19-04-2016 IPR024495 Protein of unknown function DUF2771 AMED_4158 e485a865322b7cc236933801bc573362 322 PANTHER PTHR30106 11 316 9.8E-60 T 19-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AMED_4158 e485a865322b7cc236933801bc573362 322 Pfam PF03601 Conserved hypothetical protein 698 11 303 1.2E-62 T 19-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AMED_7885 0e10339154c0b250e197aa6e8e96d1ff 271 SUPERFAMILY SSF53335 11 248 2.5E-40 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7885 0e10339154c0b250e197aa6e8e96d1ff 271 Pfam PF04672 S-adenosyl methyltransferase 5 266 3.4E-86 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_7885 0e10339154c0b250e197aa6e8e96d1ff 271 PIRSF PIRSF017393 1 267 6.4E-91 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_7885 0e10339154c0b250e197aa6e8e96d1ff 271 Gene3D G3DSA:3.40.50.150 3 266 5.2E-101 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2642 117994f3f43def54213be398265d360a 181 Pfam PF11452 Protein of unknown function (DUF3000) 2 173 1.2E-69 T 19-04-2016 IPR021555 Protein of unknown function DUF3000 AMED_2325 5552e84675f471ea0a66d0cbf6659a9a 229 SUPERFAMILY SSF160387 84 201 8.63E-17 T 19-04-2016 AMED_2325 5552e84675f471ea0a66d0cbf6659a9a 229 Pfam PF03243 Alkylmercury lyase 77 193 1.8E-16 T 19-04-2016 IPR004927 Alkylmercury lyase GO:0018836|GO:0046413 AMED_4618 193b3cae7dc23ceef5edce09368fcce1 122 Pfam PF13564 DoxX-like family 7 115 1.6E-28 T 19-04-2016 IPR032808 DoxX family AMED_2319 39ba53b419d38e6edb9ccd40205c8c84 488 Gene3D G3DSA:1.20.1250.20 192 365 3.1E-7 T 19-04-2016 AMED_2319 39ba53b419d38e6edb9ccd40205c8c84 488 SUPERFAMILY SSF103473 29 365 1.83E-17 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_4844 99548036f5114ea581881f02763aa0ff 247 Pfam PF13699 Domain of unknown function (DUF4157) 80 157 3.5E-33 T 19-04-2016 IPR025295 Domain of unknown function DUF4157 AMED_5975 0bfcad5721b3aef4da498dc82c29241a 502 PANTHER PTHR11819:SF141 2 493 4.3E-127 T 19-04-2016 AMED_5975 0bfcad5721b3aef4da498dc82c29241a 502 Pfam PF00474 Sodium:solute symporter family 33 427 6.1E-36 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_5975 0bfcad5721b3aef4da498dc82c29241a 502 PANTHER PTHR11819 2 493 4.3E-127 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_2949 4f631626b51d4d1bfc9ab1e6f076ed95 255 PANTHER PTHR32251 6 250 7.0E-69 T 19-04-2016 AMED_2949 4f631626b51d4d1bfc9ab1e6f076ed95 255 Pfam PF06966 Protein of unknown function (DUF1295) 21 241 3.2E-69 T 19-04-2016 IPR010721 Protein of unknown function DUF1295 AMED_2128 83a66386bf10f3c5a027d1f5c8e35716 258 Pfam PF14428 SCP1.201-like deaminase 138 250 1.0E-27 T 19-04-2016 IPR032724 Deaminase, SCP1.201-like AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 Pfam PF07593 ASPIC and UnbV 575 634 1.1E-7 T 19-04-2016 IPR011519 ASPIC/UnbV AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 Gene3D G3DSA:2.130.10.130 481 535 5.5E-26 T 19-04-2016 AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 Gene3D G3DSA:2.130.10.130 78 446 5.5E-26 T 19-04-2016 AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 146 223 6.2E-7 T 19-04-2016 AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 Pfam PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 297 371 1.5E-7 T 19-04-2016 AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 SUPERFAMILY SSF69318 71 445 2.75E-52 T 19-04-2016 AMED_6871 143b11f921ec8a80820bf96f8c6b044c 657 SUPERFAMILY SSF69318 480 542 2.75E-52 T 19-04-2016 AMED_4181 0d37d3dcf7d597be82367da9d15c19ac 105 Gene3D G3DSA:1.10.287.1060 6 103 2.2E-4 T 19-04-2016 AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 PANTHER PTHR10366 2 260 3.5E-47 T 19-04-2016 AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 SUPERFAMILY SSF51735 1 253 5.79E-53 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 114 1.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 61 72 1.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 154 1.9E-5 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 Gene3D G3DSA:3.40.50.720 1 251 4.4E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6861 266d7ae88f9f1ea4ae5d28aa932f4245 343 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 171 4.2E-29 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMED_0185 fc00ded59ecae2c87a2ccb4961c6c781 415 Gene3D G3DSA:1.20.1250.20 207 394 9.5E-13 T 19-04-2016 AMED_0185 fc00ded59ecae2c87a2ccb4961c6c781 415 Gene3D G3DSA:1.20.1250.20 5 188 5.7E-13 T 19-04-2016 AMED_0185 fc00ded59ecae2c87a2ccb4961c6c781 415 Pfam PF05977 Transmembrane secretion effector 9 390 6.2E-27 T 19-04-2016 IPR010290 Transmembrane secretion effector AMED_0185 fc00ded59ecae2c87a2ccb4961c6c781 415 PANTHER PTHR23513 5 398 8.4E-54 T 19-04-2016 AMED_0185 fc00ded59ecae2c87a2ccb4961c6c781 415 SUPERFAMILY SSF103473 6 396 4.19E-39 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_0609 9dc7a6c132898128131f4a68b52ab885 421 PANTHER PTHR33371 1 372 3.6E-104 T 19-04-2016 AMED_0609 9dc7a6c132898128131f4a68b52ab885 421 Pfam PF02470 MlaD protein 38 114 6.8E-15 T 19-04-2016 IPR003399 Mce/MlaD AMED_0609 9dc7a6c132898128131f4a68b52ab885 421 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 9 294 1.7E-57 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0609 9dc7a6c132898128131f4a68b52ab885 421 PANTHER PTHR33371:SF2 1 372 3.6E-104 T 19-04-2016 AMED_9242 feab2c0f0ec23ca706053d505797a1bb 200 Pfam PF05875 Ceramidase 17 190 2.6E-6 T 19-04-2016 IPR008901 Ceramidase GO:0006672|GO:0016021|GO:0016811 Reactome: REACT_22258 AMED_1501 14ac850dc9013a8b0640711dcf0c26f1 292 SUPERFAMILY SSF161098 54 252 5.1E-44 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1501 14ac850dc9013a8b0640711dcf0c26f1 292 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 52 161 1.1E-19 T 19-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AMED_1501 14ac850dc9013a8b0640711dcf0c26f1 292 Gene3D G3DSA:1.10.3720.10 54 266 3.0E-46 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_1501 14ac850dc9013a8b0640711dcf0c26f1 292 PANTHER PTHR30450:SF2 36 275 2.9E-92 T 19-04-2016 AMED_1501 14ac850dc9013a8b0640711dcf0c26f1 292 PANTHER PTHR30450 36 275 2.9E-92 T 19-04-2016 AMED_1501 14ac850dc9013a8b0640711dcf0c26f1 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 72 265 4.1E-23 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8116 6890320b825233b82478262924e2cdb8 81 SUPERFAMILY SSF140453 4 74 1.96E-7 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_8116 6890320b825233b82478262924e2cdb8 81 Gene3D G3DSA:1.10.287.1060 5 75 4.7E-6 T 19-04-2016 AMED_3627 2d87f08a60c543102903a1541fa81536 275 Gene3D G3DSA:3.40.47.10 54 158 4.6E-4 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_3627 2d87f08a60c543102903a1541fa81536 275 SUPERFAMILY SSF53901 34 157 3.4E-7 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMED_7605 a30c4574f3bf5e3b13eb96b942f92b6d 454 PANTHER PTHR33744 193 453 5.5E-14 T 19-04-2016 AMED_7605 a30c4574f3bf5e3b13eb96b942f92b6d 454 Pfam PF13556 PucR C-terminal helix-turn-helix domain 392 448 1.5E-15 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_4645 10298d8cd6cf687dfbfc93c10e60044f 694 Pfam PF13515 Fusaric acid resistance protein-like 376 501 2.4E-12 T 19-04-2016 AMED_7397 058d861234a2cf4adb6612c98a65a44d 370 Pfam PF09594 Protein of unknown function (DUF2029) 45 313 2.2E-10 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_5961 e46b80ff5ad7f406e2f6414cd28c53a1 435 Pfam PF04434 SWIM zinc finger 68 86 2.3E-5 T 19-04-2016 IPR007527 Zinc finger, SWIM-type GO:0008270 AMED_0753 0d608492c9c765f8c5ba7efd9bc36724 162 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 19 153 6.8E-7 T 19-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_0753 0d608492c9c765f8c5ba7efd9bc36724 162 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 63 156 2.2E-11 T 19-04-2016 IPR026392 Exosortase/Archaeosortase domain AMED_9040 fd03e0a03bf6997fb6e992af366871c3 111 SUPERFAMILY SSF55718 32 109 5.89E-8 T 19-04-2016 IPR003033 SCP2 sterol-binding domain AMED_3942 7652e28fce7fc15775f8e955567422ba 177 Pfam PF07291 Methylamine utilisation protein MauE 7 171 2.0E-5 T 19-04-2016 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 UniPathway: UPA00895 AMED_0667 7bc7d7a34e9d2ecf4df55d0bf4a4d16a 422 Pfam PF14362 Domain of unknown function (DUF4407) 20 351 7.4E-84 T 19-04-2016 IPR025519 Protein of unknown function DUF4407 AMED_5528 8e220623a310756c0e4c48f5b679d8d0 290 Gene3D G3DSA:3.20.20.30 11 246 3.3E-53 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5528 8e220623a310756c0e4c48f5b679d8d0 290 Pfam PF00296 Luciferase-like monooxygenase 15 247 7.1E-40 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5528 8e220623a310756c0e4c48f5b679d8d0 290 SUPERFAMILY SSF51679 8 253 3.68E-46 T 19-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMED_5528 8e220623a310756c0e4c48f5b679d8d0 290 PANTHER PTHR30011 16 246 3.7E-41 T 19-04-2016 AMED_8531 37ba3f8c60b6f797c533fe7df7e4b25e 153 PANTHER PTHR36222 12 153 1.7E-54 T 19-04-2016 AMED_8531 37ba3f8c60b6f797c533fe7df7e4b25e 153 SMART SM00960 24 114 3.2E-30 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_8531 37ba3f8c60b6f797c533fe7df7e4b25e 153 Pfam PF03259 Roadblock/LC7 domain 24 113 8.6E-26 T 19-04-2016 IPR004942 Roadblock/LAMTOR2 domain AMED_8531 37ba3f8c60b6f797c533fe7df7e4b25e 153 Gene3D G3DSA:3.30.450.30 21 139 1.0E-25 T 19-04-2016 AMED_8531 37ba3f8c60b6f797c533fe7df7e4b25e 153 SUPERFAMILY SSF103196 19 142 6.8E-34 T 19-04-2016 AMED_4258 70f7a389f131d896a8df634b0460822a 120 PANTHER PTHR35908 2 120 1.4E-32 T 19-04-2016 AMED_4258 70f7a389f131d896a8df634b0460822a 120 PANTHER PTHR35908:SF1 2 120 1.4E-32 T 19-04-2016 AMED_4258 70f7a389f131d896a8df634b0460822a 120 SUPERFAMILY SSF54593 1 117 1.21E-12 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_4258 70f7a389f131d896a8df634b0460822a 120 Gene3D G3DSA:3.10.180.10 1 117 2.4E-10 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_3902 bb93fe7cede572504400156c0fa6b682 134 Pfam PF13396 Phospholipase_D-nuclease N-terminal 26 68 7.7E-6 T 19-04-2016 IPR027379 Cardiolipin synthase N-terminal AMED_9197 28ff1131e75c0f48b01a79374aac69aa 91 PANTHER PTHR33884 1 89 1.3E-21 T 19-04-2016 AMED_9197 28ff1131e75c0f48b01a79374aac69aa 91 PANTHER PTHR33884:SF1 1 89 1.3E-21 T 19-04-2016 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 PANTHER PTHR30328 3 187 2.8E-18 T 19-04-2016 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 Gene3D G3DSA:1.10.357.10 53 185 4.5E-24 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 PANTHER PTHR30328:SF7 3 187 2.8E-18 T 19-04-2016 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 SUPERFAMILY SSF46689 6 69 3.54E-11 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 5.5E-8 T 19-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 Gene3D G3DSA:1.10.10.60 6 52 6.6E-10 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_4335 fe50f814f00cf1e76121dcdf1dea7504 198 SUPERFAMILY SSF48498 80 187 6.07E-24 T 19-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMED_6410 cd60ee1737c8cdd5e14135456244d089 84 Pfam PF13564 DoxX-like family 9 84 2.4E-10 T 19-04-2016 IPR032808 DoxX family AMED_8052 9cc1ad1df6e993bd4c73953bb49bcc7f 304 Pfam PF02646 RmuC family 60 263 7.2E-37 T 19-04-2016 IPR003798 DNA recombination RmuC AMED_8052 9cc1ad1df6e993bd4c73953bb49bcc7f 304 PANTHER PTHR30563 68 213 8.3E-16 T 19-04-2016 AMED_6119 1acfc70276a94ed2490ecb23dcc82a1d 134 Gene3D G3DSA:1.20.1290.10 11 87 3.6E-9 T 19-04-2016 IPR029032 AhpD-like AMED_6119 1acfc70276a94ed2490ecb23dcc82a1d 134 SUPERFAMILY SSF69118 23 86 3.17E-10 T 19-04-2016 IPR029032 AhpD-like AMED_6439 8dd45b6d96c1e027ab00b2dce3556c83 320 SUPERFAMILY SSF51735 2 34 9.5E-6 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6439 8dd45b6d96c1e027ab00b2dce3556c83 320 SUPERFAMILY SSF51735 68 119 9.5E-6 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_6439 8dd45b6d96c1e027ab00b2dce3556c83 320 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 107 9.9E-8 T 19-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 AMED_6439 8dd45b6d96c1e027ab00b2dce3556c83 320 Gene3D G3DSA:3.40.50.720 2 169 2.0E-15 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 PANTHER PTHR23508 12 425 3.8E-152 T 19-04-2016 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 295 312 - T 19-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 PANTHER PTHR23508:SF1 12 425 3.8E-152 T 19-04-2016 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 Pfam PF07690 Major Facilitator Superfamily 283 430 1.8E-12 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 Gene3D G3DSA:1.20.1250.20 235 426 8.3E-23 T 19-04-2016 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 Gene3D G3DSA:1.20.1250.20 14 224 5.8E-24 T 19-04-2016 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 Pfam PF00083 Sugar (and other) transporter 15 228 3.1E-23 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMED_5231 15e3a695aac1b7897026891d3c42dd8c 435 SUPERFAMILY SSF103473 12 424 1.02E-63 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_8730 1895a808cb727f59ac3c4a6c5ba786c8 274 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 250 270 9.8E-5 T 19-04-2016 IPR024726 Ferric iron reductase, C-terminal GO:0051537 AMED_5140 333f9cd92bc35844b2469a039ed1eef8 570 Gene3D G3DSA:3.40.720.10 326 513 1.2E-8 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMED_5140 333f9cd92bc35844b2469a039ed1eef8 570 SUPERFAMILY SSF53649 261 446 5.0E-12 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_5140 333f9cd92bc35844b2469a039ed1eef8 570 SUPERFAMILY SSF53649 474 516 5.0E-12 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMED_6038 90b77aa37c142d6d4526003e7fe7ac7b 108 Pfam PF00764 Arginosuccinate synthase 16 58 2.6E-6 T 19-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_6038 90b77aa37c142d6d4526003e7fe7ac7b 108 SUPERFAMILY SSF69864 16 100 3.92E-9 T 19-04-2016 AMED_6038 90b77aa37c142d6d4526003e7fe7ac7b 108 Gene3D G3DSA:3.90.1260.10 16 59 3.6E-6 T 19-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMED_8792 a7b46ef71958de0191ce05203a39cfe4 263 Pfam PF14011 EspG family 53 250 4.8E-7 T 19-04-2016 IPR025734 EspG family AMED_1419 1bec95ad1f97faf1e384a3a03bd02d80 112 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 12 105 2.9E-10 T 19-04-2016 IPR022536 ESX-1 secretion-associated protein EspC AMED_7428 7f3fbfd49067752c54f674b4eb39bee9 114 Pfam PF13466 STAS domain 19 98 7.4E-18 T 19-04-2016 IPR002645 STAS domain AMED_7428 7f3fbfd49067752c54f674b4eb39bee9 114 PANTHER PTHR33495:SF2 6 114 1.9E-26 T 19-04-2016 AMED_7428 7f3fbfd49067752c54f674b4eb39bee9 114 PANTHER PTHR33495 6 114 1.9E-26 T 19-04-2016 AMED_7428 7f3fbfd49067752c54f674b4eb39bee9 114 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 6 109 3.8E-18 T 19-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 AMED_7428 7f3fbfd49067752c54f674b4eb39bee9 114 Gene3D G3DSA:3.30.750.24 7 112 2.5E-29 T 19-04-2016 IPR002645 STAS domain AMED_7428 7f3fbfd49067752c54f674b4eb39bee9 114 SUPERFAMILY SSF52091 7 112 1.59E-23 T 19-04-2016 IPR002645 STAS domain AMED_2934 b3b9f98c08f8e678b36b64d8677c1ecf 175 Pfam PF07291 Methylamine utilisation protein MauE 11 139 2.0E-6 T 19-04-2016 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 UniPathway: UPA00895 AMED_8227 c2e820266c69e53e9444d5338576aad7 294 Gene3D G3DSA:3.40.710.10 123 283 1.9E-14 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8227 c2e820266c69e53e9444d5338576aad7 294 SUPERFAMILY SSF56601 71 267 6.49E-20 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_8227 c2e820266c69e53e9444d5338576aad7 294 Pfam PF13354 Beta-lactamase enzyme family 123 261 7.1E-6 T 19-04-2016 AMED_6129 6d89139a0a9cadf6179f5bdc03094fc9 305 Pfam PF00583 Acetyltransferase (GNAT) family 203 292 4.5E-6 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_6129 6d89139a0a9cadf6179f5bdc03094fc9 305 PANTHER PTHR23091 113 293 9.0E-13 T 19-04-2016 AMED_6129 6d89139a0a9cadf6179f5bdc03094fc9 305 SUPERFAMILY SSF55729 80 296 1.72E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_6129 6d89139a0a9cadf6179f5bdc03094fc9 305 Gene3D G3DSA:3.40.630.30 142 294 1.0E-16 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_0437 834da3ce00e104c56d46562aad7bd083 306 SUPERFAMILY SSF53850 41 304 4.49E-45 T 19-04-2016 AMED_0437 834da3ce00e104c56d46562aad7bd083 306 Gene3D G3DSA:3.40.190.10 37 143 4.3E-42 T 19-04-2016 AMED_0437 834da3ce00e104c56d46562aad7bd083 306 Gene3D G3DSA:3.40.190.10 250 306 4.3E-42 T 19-04-2016 AMED_0437 834da3ce00e104c56d46562aad7bd083 306 Gene3D G3DSA:3.40.190.120 144 243 8.1E-16 T 19-04-2016 AMED_0437 834da3ce00e104c56d46562aad7bd083 306 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 41 302 5.6E-45 T 19-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AMED_0437 834da3ce00e104c56d46562aad7bd083 306 PANTHER PTHR30177:SF12 1 306 4.2E-47 T 19-04-2016 AMED_0437 834da3ce00e104c56d46562aad7bd083 306 PANTHER PTHR30177 1 306 4.2E-47 T 19-04-2016 AMED_2622 58593a910d7ac66d24132150be294ed0 314 Pfam PF00491 Arginase family 33 304 6.2E-93 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_2622 58593a910d7ac66d24132150be294ed0 314 PIRSF PIRSF036979 10 310 6.5E-109 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_2622 58593a910d7ac66d24132150be294ed0 314 ProSitePatterns PS01053 Arginase family signature. 236 257 - T 19-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 AMED_2622 58593a910d7ac66d24132150be294ed0 314 SUPERFAMILY SSF52768 13 309 5.22E-102 T 19-04-2016 AMED_2622 58593a910d7ac66d24132150be294ed0 314 PRINTS PR00116 Arginase signature 233 262 9.5E-14 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_2622 58593a910d7ac66d24132150be294ed0 314 PRINTS PR00116 Arginase signature 120 135 9.5E-14 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_2622 58593a910d7ac66d24132150be294ed0 314 TIGRFAM TIGR01230 agmatinase: agmatinase 30 305 7.1E-73 T 19-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 AMED_2622 58593a910d7ac66d24132150be294ed0 314 Gene3D G3DSA:3.40.800.10 9 308 2.5E-118 T 19-04-2016 IPR023696 Ureohydrolase domain AMED_2622 58593a910d7ac66d24132150be294ed0 314 PANTHER PTHR11358 6 308 2.1E-113 T 19-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 AMED_5789 e63ec7bd09eafe5789cf2dcba5d74c42 410 Pfam PF00691 OmpA family 296 380 8.0E-11 T 19-04-2016 IPR006665 OmpA-like domain AMED_5789 e63ec7bd09eafe5789cf2dcba5d74c42 410 Gene3D G3DSA:3.30.1330.60 282 404 1.7E-18 T 19-04-2016 IPR006665 OmpA-like domain AMED_5789 e63ec7bd09eafe5789cf2dcba5d74c42 410 SUPERFAMILY SSF103088 288 403 4.71E-17 T 19-04-2016 IPR006665 OmpA-like domain AMED_1105 030c43430c3947c5d9181e66bacb8f2a 290 Pfam PF12705 PD-(D/E)XK nuclease superfamily 22 272 1.5E-32 T 19-04-2016 AMED_1559 e26979f3a1a35193fdac3d86fde71b1a 81 SUPERFAMILY SSF52833 5 80 1.45E-8 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_1559 e26979f3a1a35193fdac3d86fde71b1a 81 Gene3D G3DSA:3.40.30.10 4 78 2.8E-7 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_7783 99ef463d4269f0bd0f46f10941306eac 385 PANTHER PTHR22926 284 381 6.4E-89 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_7783 99ef463d4269f0bd0f46f10941306eac 385 PANTHER PTHR22926 8 267 6.4E-89 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_7783 99ef463d4269f0bd0f46f10941306eac 385 Pfam PF00953 Glycosyl transferase family 4 91 257 1.5E-34 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMED_7783 99ef463d4269f0bd0f46f10941306eac 385 PANTHER PTHR22926:SF3 284 381 6.4E-89 T 19-04-2016 AMED_7783 99ef463d4269f0bd0f46f10941306eac 385 PANTHER PTHR22926:SF3 8 267 6.4E-89 T 19-04-2016 AMED_4783 5219759cac3940f06605a677fa3a9664 630 Gene3D G3DSA:1.25.40.10 285 401 4.4E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4783 5219759cac3940f06605a677fa3a9664 630 Gene3D G3DSA:1.25.40.10 130 131 4.4E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4783 5219759cac3940f06605a677fa3a9664 630 Gene3D G3DSA:1.25.40.10 5 74 4.4E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_1146 128e4238ef3a744890dc129c4bf9932b 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 116 2.0E-6 T 19-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMED_1146 128e4238ef3a744890dc129c4bf9932b 122 SUPERFAMILY SSF54593 1 119 3.44E-21 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_1146 128e4238ef3a744890dc129c4bf9932b 122 Gene3D G3DSA:3.10.180.10 3 119 7.9E-19 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_7465 a57d31a84f6fb0c7e72f1b18227ef633 260 PANTHER PTHR35152 1 242 3.9E-38 T 19-04-2016 AMED_7465 a57d31a84f6fb0c7e72f1b18227ef633 260 Pfam PF03707 Bacterial signalling protein N terminal repeat 123 181 5.8E-18 T 19-04-2016 IPR005330 MHYT domain AMED_7465 a57d31a84f6fb0c7e72f1b18227ef633 260 Pfam PF03707 Bacterial signalling protein N terminal repeat 58 117 3.7E-16 T 19-04-2016 IPR005330 MHYT domain AMED_7465 a57d31a84f6fb0c7e72f1b18227ef633 260 Pfam PF03707 Bacterial signalling protein N terminal repeat 185 232 5.3E-7 T 19-04-2016 IPR005330 MHYT domain AMED_9046 d155dd96d59eac09ff78663fee6ea73e 157 Pfam PF13936 Helix-turn-helix domain 1 41 2.2E-11 T 19-04-2016 IPR025246 Transposase IS30-like HTH domain AMED_9046 d155dd96d59eac09ff78663fee6ea73e 157 PANTHER PTHR10948 1 148 2.7E-22 T 19-04-2016 AMED_3432 b1543a0e0ee1894b00f6045e607340e7 311 SUPERFAMILY SSF55120 82 294 1.76E-48 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_3432 b1543a0e0ee1894b00f6045e607340e7 311 PANTHER PTHR11079:SF61 8 297 6.9E-101 T 19-04-2016 AMED_3432 b1543a0e0ee1894b00f6045e607340e7 311 PANTHER PTHR11079 8 297 6.9E-101 T 19-04-2016 AMED_3432 b1543a0e0ee1894b00f6045e607340e7 311 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 137 151 - T 19-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_3432 b1543a0e0ee1894b00f6045e607340e7 311 Pfam PF00849 RNA pseudouridylate synthase 98 244 4.6E-19 T 19-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMED_1883 b4699c7c18ef152019d6055367f813d9 298 Gene3D G3DSA:3.20.20.70 30 294 3.3E-34 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_1883 b4699c7c18ef152019d6055367f813d9 298 SUPERFAMILY SSF51569 33 293 1.03E-29 T 19-04-2016 AMED_7768 ecb5662329fcedd0e22efdb61d736087 143 SUPERFAMILY SSF54427 2 128 8.79E-35 T 19-04-2016 IPR032710 NTF2-like domain AMED_7768 ecb5662329fcedd0e22efdb61d736087 143 Pfam PF12680 SnoaL-like domain 5 112 1.0E-15 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_7768 ecb5662329fcedd0e22efdb61d736087 143 Gene3D G3DSA:3.10.450.50 2 137 1.3E-50 T 19-04-2016 IPR032710 NTF2-like domain AMED_6186 6415a0ca396dccae14e2d1a802a6e291 429 SUPERFAMILY SSF140459 73 150 1.49E-5 T 19-04-2016 AMED_8361 a4b9c1bad56a0d4987eae103447df223 119 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 59 8.2E-13 T 19-04-2016 IPR027379 Cardiolipin synthase N-terminal AMED_7994 95c38db55334443cb53105a41f7dcf5d 104 SUPERFAMILY SSF50022 2 98 2.75E-28 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7994 95c38db55334443cb53105a41f7dcf5d 104 Gene3D G3DSA:2.102.10.10 2 99 2.8E-29 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_7994 95c38db55334443cb53105a41f7dcf5d 104 PANTHER PTHR21496:SF11 1 99 4.2E-23 T 19-04-2016 AMED_7994 95c38db55334443cb53105a41f7dcf5d 104 PANTHER PTHR21496 1 99 4.2E-23 T 19-04-2016 AMED_7994 95c38db55334443cb53105a41f7dcf5d 104 Pfam PF00355 Rieske [2Fe-2S] domain 3 84 3.3E-15 T 19-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMED_9223 bfe7242af63dabd523340e8f6eb9ec3b 155 PANTHER PTHR35335 1 155 5.8E-26 T 19-04-2016 AMED_9223 bfe7242af63dabd523340e8f6eb9ec3b 155 PANTHER PTHR35335:SF1 1 155 5.8E-26 T 19-04-2016 AMED_9223 bfe7242af63dabd523340e8f6eb9ec3b 155 Pfam PF04186 FxsA cytoplasmic membrane protein 4 109 1.7E-31 T 19-04-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AMED_0320 3ee0c949e40370ca25b959f48d4ed692 332 PANTHER PTHR39335 36 309 1.5E-57 T 19-04-2016 AMED_0320 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 128 168 2.6E-15 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_0320 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 253 294 2.8E-14 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_0320 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 70 109 1.4E-15 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_0320 3ee0c949e40370ca25b959f48d4ed692 332 Pfam PF03640 Secreted repeat of unknown function 198 235 1.0E-13 T 19-04-2016 IPR005297 Lipoprotein repeat AMED_5379 ee0a9ef127a113364b8e3aa6b67318ad 455 Pfam PF00656 Caspase domain 13 188 7.5E-9 T 19-04-2016 AMED_5379 ee0a9ef127a113364b8e3aa6b67318ad 455 Gene3D G3DSA:3.40.50.1460 22 103 2.7E-4 T 19-04-2016 IPR029030 Caspase-like domain AMED_7424 90b0fc2eb19b55f61feb84c1d70403ee 335 Gene3D G3DSA:3.20.20.80 177 285 1.1E-7 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7424 90b0fc2eb19b55f61feb84c1d70403ee 335 Gene3D G3DSA:3.20.20.80 82 144 1.1E-7 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7424 90b0fc2eb19b55f61feb84c1d70403ee 335 SUPERFAMILY SSF51445 2 94 3.27E-21 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7424 90b0fc2eb19b55f61feb84c1d70403ee 335 SUPERFAMILY SSF51445 126 283 3.27E-21 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_8852 c3ac2ed2e5ace2e34fdad54bd345f49a 98 PANTHER PTHR38839:SF3 8 89 1.8E-33 T 19-04-2016 AMED_8852 c3ac2ed2e5ace2e34fdad54bd345f49a 98 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 2 77 13.957 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_8852 c3ac2ed2e5ace2e34fdad54bd345f49a 98 PANTHER PTHR38839 8 89 1.8E-33 T 19-04-2016 AMED_8852 c3ac2ed2e5ace2e34fdad54bd345f49a 98 Pfam PF02467 Transcription factor WhiB 8 70 5.8E-23 T 19-04-2016 IPR003482 Transcription factor WhiB AMED_4145 5847bd518a0f8db70e1430cfbee6690c 386 Pfam PF06245 Protein of unknown function (DUF1015) 101 384 6.3E-30 T 19-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 AMED_2682 5c5d4c2b768734ffa9eb3c8be3782362 452 PANTHER PTHR39441 4 449 1.6E-102 T 19-04-2016 AMED_2682 5c5d4c2b768734ffa9eb3c8be3782362 452 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 61 449 6.0E-134 T 19-04-2016 IPR018721 Protein of unknown function DUF2252 AMED_7422 a1dffb2b57406f06bab82bc67f24746a 322 Gene3D G3DSA:1.25.40.10 73 152 2.3E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7422 a1dffb2b57406f06bab82bc67f24746a 322 SUPERFAMILY SSF48452 73 197 6.88E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_7422 a1dffb2b57406f06bab82bc67f24746a 322 SUPERFAMILY SSF48452 245 277 6.88E-8 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_2619 7541207c0d2105c2124ec3602672ec96 276 PANTHER PTHR30146 1 276 3.4E-77 T 19-04-2016 AMED_2619 7541207c0d2105c2124ec3602672ec96 276 Gene3D G3DSA:3.40.50.2300 111 272 1.1E-54 T 19-04-2016 AMED_2619 7541207c0d2105c2124ec3602672ec96 276 Pfam PF13377 Periplasmic binding protein-like domain 110 270 2.2E-35 T 19-04-2016 AMED_2619 7541207c0d2105c2124ec3602672ec96 276 Gene3D G3DSA:3.40.50.2300 2 110 3.7E-33 T 19-04-2016 AMED_2619 7541207c0d2105c2124ec3602672ec96 276 SUPERFAMILY SSF53822 2 272 1.04E-75 T 19-04-2016 IPR028082 Periplasmic binding protein-like I AMED_8597 b8cbfba88d1eefaa31ae5eca0861745e 164 Pfam PF00583 Acetyltransferase (GNAT) family 46 121 8.9E-13 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8597 b8cbfba88d1eefaa31ae5eca0861745e 164 SUPERFAMILY SSF55729 2 121 4.56E-21 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8597 b8cbfba88d1eefaa31ae5eca0861745e 164 PANTHER PTHR23091 2 121 6.0E-14 T 19-04-2016 AMED_8597 b8cbfba88d1eefaa31ae5eca0861745e 164 Gene3D G3DSA:3.40.630.30 2 157 1.5E-64 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8597 b8cbfba88d1eefaa31ae5eca0861745e 164 TIGRFAM TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase 2 156 3.7E-58 T 19-04-2016 IPR012772 L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 KEGG: 00250+2.3.1.17|KEGG: 00260+2.3.1.178|UniPathway: UPA00067 AMED_0797 3e409a96626aacb3ce87ffd282554d24 141 Pfam PF08044 Domain of unknown function (DUF1707) 9 61 5.7E-19 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_0797 3e409a96626aacb3ce87ffd282554d24 141 PANTHER PTHR40763:SF1 9 61 8.8E-14 T 19-04-2016 AMED_0797 3e409a96626aacb3ce87ffd282554d24 141 PANTHER PTHR40763 9 61 8.8E-14 T 19-04-2016 AMED_7901 50886a19cac79555fbd3386767878a8c 308 Gene3D G3DSA:3.30.70.1230 11 120 2.8E-4 T 19-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMED_7901 50886a19cac79555fbd3386767878a8c 308 SUPERFAMILY SSF55073 10 157 4.55E-8 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_4329 e2b98e099e2fab94d275a26a973826f8 232 Pfam PF01883 Domain of unknown function DUF59 9 77 1.2E-11 T 19-04-2016 IPR002744 Domain of unknown function DUF59 AMED_4329 e2b98e099e2fab94d275a26a973826f8 232 SUPERFAMILY SSF117916 9 92 1.9E-14 T 19-04-2016 AMED_2531 7b1bb2943fda89a721d4ef9dcd87b7e3 85 Gene3D G3DSA:1.10.10.60 18 68 1.1E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_2531 7b1bb2943fda89a721d4ef9dcd87b7e3 85 SUPERFAMILY SSF46689 18 67 2.64E-8 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_1090 f3de34d6d5fc059f383119f3f92d9966 277 PANTHER PTHR39430 1 274 2.3E-46 T 19-04-2016 AMED_1090 f3de34d6d5fc059f383119f3f92d9966 277 Pfam PF02517 CAAX protease self-immunity 107 195 5.9E-14 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_8336 daa5aa8eef171681a8e0f9afc8f25c6f 371 Gene3D G3DSA:3.40.50.150 160 315 9.3E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8336 daa5aa8eef171681a8e0f9afc8f25c6f 371 Pfam PF05175 Methyltransferase small domain 166 307 2.1E-10 T 19-04-2016 IPR007848 Methyltransferase small domain GO:0008168 AMED_8336 daa5aa8eef171681a8e0f9afc8f25c6f 371 PANTHER PTHR18895 197 308 2.1E-20 T 19-04-2016 AMED_8336 daa5aa8eef171681a8e0f9afc8f25c6f 371 SUPERFAMILY SSF53335 152 308 3.23E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_5174 8775c0a688cdbca0e6e2765c7c9a2e96 468 Gene3D G3DSA:3.20.20.190 36 182 4.6E-7 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_5174 8775c0a688cdbca0e6e2765c7c9a2e96 468 SUPERFAMILY SSF51695 28 183 3.66E-15 T 19-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AMED_2207 dcefe9dd61387553c7436ef62956dd05 465 Pfam PF05991 YacP-like NYN domain 345 463 1.7E-20 T 19-04-2016 IPR010298 Protein of unknown function DUF901 AMED_9150 d4b49f066ec99b188b2a66c586e4bb1f 815 Pfam PF02687 FtsX-like permease family 692 804 1.9E-10 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_9150 d4b49f066ec99b188b2a66c586e4bb1f 815 Pfam PF02687 FtsX-like permease family 260 379 8.3E-17 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_9150 d4b49f066ec99b188b2a66c586e4bb1f 815 PANTHER PTHR30489:SF0 260 814 1.0E-59 T 19-04-2016 AMED_9150 d4b49f066ec99b188b2a66c586e4bb1f 815 PANTHER PTHR30489 260 814 1.0E-59 T 19-04-2016 AMED_4214 f2eff65d070b4a329847db1df6d3f902 162 PANTHER PTHR23091:SF187 3 161 9.7E-24 T 19-04-2016 AMED_4214 f2eff65d070b4a329847db1df6d3f902 162 Gene3D G3DSA:3.40.630.30 3 161 1.7E-35 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4214 f2eff65d070b4a329847db1df6d3f902 162 SUPERFAMILY SSF55729 3 161 8.29E-29 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_4214 f2eff65d070b4a329847db1df6d3f902 162 Pfam PF13420 Acetyltransferase (GNAT) domain 5 155 3.0E-17 T 19-04-2016 AMED_4214 f2eff65d070b4a329847db1df6d3f902 162 PANTHER PTHR23091 3 161 9.7E-24 T 19-04-2016 AMED_5431 abadacea2b0241fb506b203ddb7c0385 149 Pfam PF08592 Domain of unknown function (DUF1772) 21 141 3.3E-11 T 19-04-2016 IPR013901 Protein of unknown function DUF1772 AMED_9336 ff988ca2bc361449e481a869372715eb 107 SUPERFAMILY SSF140453 8 103 1.57E-6 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_8201 56bdad94eba0ed4166e066817e915fd3 148 SUPERFAMILY SSF54593 6 129 2.55E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8201 56bdad94eba0ed4166e066817e915fd3 148 Gene3D G3DSA:3.10.180.10 8 130 3.6E-17 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_6104 9be90619add7221c25065ff1a2f6558e 218 SMART SM00953 54 190 2.5E-6 T 19-04-2016 IPR014914 RES domain AMED_6104 9be90619add7221c25065ff1a2f6558e 218 Pfam PF08808 RES domain 32 197 1.0E-21 T 19-04-2016 IPR014914 RES domain AMED_6667 5647b9a60f2d796ccebe5d0799b7d4e6 123 Pfam PF01337 Barstar (barnase inhibitor) 30 103 4.4E-23 T 19-04-2016 IPR000468 Barstar (barnase inhibitor) AMED_6667 5647b9a60f2d796ccebe5d0799b7d4e6 123 Gene3D G3DSA:3.30.370.10 30 105 1.3E-22 T 19-04-2016 IPR000468 Barstar (barnase inhibitor) AMED_6667 5647b9a60f2d796ccebe5d0799b7d4e6 123 SUPERFAMILY SSF52038 27 108 3.01E-20 T 19-04-2016 IPR000468 Barstar (barnase inhibitor) AMED_9243 b401eded17dfdf2039187bd54a66756e 551 PANTHER PTHR11819:SF2 5 524 8.4E-165 T 19-04-2016 AMED_9243 b401eded17dfdf2039187bd54a66756e 551 PANTHER PTHR11819 5 524 8.4E-165 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_1470 243ac8b5c8832869e04189999c5e88b1 189 Pfam PF03729 Short repeat of unknown function (DUF308) 135 182 5.2E-6 T 19-04-2016 IPR005325 Protein of unknown function DUF308, membrane AMED_1470 243ac8b5c8832869e04189999c5e88b1 189 Pfam PF03729 Short repeat of unknown function (DUF308) 21 80 3.0E-10 T 19-04-2016 IPR005325 Protein of unknown function DUF308, membrane AMED_1470 243ac8b5c8832869e04189999c5e88b1 189 Pfam PF03729 Short repeat of unknown function (DUF308) 77 147 3.0E-12 T 19-04-2016 IPR005325 Protein of unknown function DUF308, membrane AMED_5600 a91942b792de673582d19115e97f1ea5 154 Pfam PF08044 Domain of unknown function (DUF1707) 18 70 3.7E-17 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_2860 27c6e618e52f8bf57087611edd6db177 215 SUPERFAMILY SSF53137 79 206 1.27E-23 T 19-04-2016 AMED_0751 cfa9f43e74dd368c8ce76903c85c9cf1 59 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 18 51 1.5E-4 T 19-04-2016 IPR019931 LPXTG cell wall anchor domain AMED_6576 28e38512d661b66428c1966ef0f1ec43 183 TIGRFAM TIGR04537 encap_target: encapsulation C-terminal sorting signal 172 181 0.016 T 19-04-2016 AMED_6576 28e38512d661b66428c1966ef0f1ec43 183 Gene3D G3DSA:1.20.120.520 11 124 3.9E-6 T 19-04-2016 AMED_6576 28e38512d661b66428c1966ef0f1ec43 183 Pfam PF01814 Hemerythrin HHE cation binding domain 4 116 2.0E-10 T 19-04-2016 IPR012312 Haemerythrin-like AMED_5513 7d66ab000a35033527dc712b8d73d8e9 178 Pfam PF13671 AAA domain 12 126 3.2E-7 T 19-04-2016 AMED_5513 7d66ab000a35033527dc712b8d73d8e9 178 Gene3D G3DSA:3.40.50.300 11 173 2.2E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5513 7d66ab000a35033527dc712b8d73d8e9 178 SUPERFAMILY SSF52540 10 172 1.1E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4511 555398c99bade72af899acaafaa5aaef 274 PANTHER PTHR32243 1 274 4.4E-76 T 19-04-2016 AMED_4511 555398c99bade72af899acaafaa5aaef 274 Gene3D G3DSA:1.10.3720.10 5 262 8.3E-58 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4511 555398c99bade72af899acaafaa5aaef 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 259 1.4E-17 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_4511 555398c99bade72af899acaafaa5aaef 274 SUPERFAMILY SSF161098 3 271 1.24E-63 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_2654 96e0187f3ebc183d499edb77c3d997d3 220 PANTHER PTHR12677 6 176 1.5E-26 T 19-04-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 AMED_2654 96e0187f3ebc183d499edb77c3d997d3 220 Pfam PF09335 SNARE associated Golgi protein 59 176 6.3E-22 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_2654 96e0187f3ebc183d499edb77c3d997d3 220 PANTHER PTHR12677:SF5 6 176 1.5E-26 T 19-04-2016 AMED_0570 c25fe6209fda8c42c02b6453b592a08f 108 Pfam PF10823 Protein of unknown function (DUF2568) 5 93 4.6E-23 T 19-04-2016 IPR021214 Protein of unknown function DUF2568 AMED_3229 7b760be660d4db00a01c7d81162139ca 99 Pfam PF07561 Domain of Unknown Function (DUF1540) 11 43 2.6E-4 T 19-04-2016 IPR011437 Domain of unknown function DUF1540 AMED_3229 7b760be660d4db00a01c7d81162139ca 99 Pfam PF07561 Domain of Unknown Function (DUF1540) 62 86 0.0014 T 19-04-2016 IPR011437 Domain of unknown function DUF1540 AMED_5166 76373a003e9bd948c549a44a897f04ce 233 SUPERFAMILY SSF89562 11 175 1.09E-30 T 19-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMED_5166 76373a003e9bd948c549a44a897f04ce 233 PANTHER PTHR33254 3 221 3.8E-28 T 19-04-2016 AMED_5166 76373a003e9bd948c549a44a897f04ce 233 Gene3D G3DSA:3.50.30.40 11 173 2.2E-30 T 19-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMED_5166 76373a003e9bd948c549a44a897f04ce 233 Pfam PF03737 Demethylmenaquinone methyltransferase 14 165 1.8E-21 T 19-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMED_2127 1b0aa7c8e5fbf8ecb55034f1d8596d73 142 Pfam PF14430 Immunity protein Imm1 21 137 7.0E-30 T 19-04-2016 IPR025680 Immunity protein Imm1 AMED_8976 96d053344c2853ee514df5a5cf57732a 343 PANTHER PTHR19353:SF34 5 334 6.4E-97 T 19-04-2016 AMED_8976 96d053344c2853ee514df5a5cf57732a 343 PANTHER PTHR19353 5 334 6.4E-97 T 19-04-2016 AMED_8976 96d053344c2853ee514df5a5cf57732a 343 PIRSF PIRSF015921 3 342 7.8E-77 T 19-04-2016 IPR012171 Fatty acid desaturase GO:0006629|GO:0016021|GO:0016491 AMED_8976 96d053344c2853ee514df5a5cf57732a 343 Pfam PF00487 Fatty acid desaturase 59 315 6.5E-38 T 19-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 AMED_3283 b1374da20f0ee4d130956967a649d97f 168 Gene3D G3DSA:2.170.270.10 18 132 1.7E-12 T 19-04-2016 AMED_3283 b1374da20f0ee4d130956967a649d97f 168 PANTHER PTHR12350 21 152 3.3E-20 T 19-04-2016 AMED_3283 b1374da20f0ee4d130956967a649d97f 168 SUPERFAMILY SSF82199 19 130 3.14E-13 T 19-04-2016 AMED_0170 7c49a62d807da814a6194466dac23c8a 758 Pfam PF13625 Helicase conserved C-terminal domain 480 596 2.8E-26 T 19-04-2016 IPR032830 Helicase XPB/Ssl2, N-terminal domain AMED_4073 e01abf5b1330a46c5f9395cb849888d9 113 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 5 93 5.6E-22 T 19-04-2016 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-7591|UniPathway: UPA00799|UniPathway: UPA00802 AMED_5495 2750d874568f94db485b76c291c6ca9e 210 Pfam PF02517 CAAX protease self-immunity 47 144 2.4E-13 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_5495 2750d874568f94db485b76c291c6ca9e 210 PANTHER PTHR39430 4 210 4.5E-24 T 19-04-2016 AMED_6781 e3632bc149b94ca91f1bc4c0af261da5 279 PIRSF PIRSF017393 5 279 1.2E-89 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_6781 e3632bc149b94ca91f1bc4c0af261da5 279 SUPERFAMILY SSF53335 16 265 1.67E-39 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6781 e3632bc149b94ca91f1bc4c0af261da5 279 Pfam PF04672 S-adenosyl methyltransferase 14 279 6.0E-83 T 19-04-2016 IPR006764 S-adenosyl-L-methionine dependent methyltransferase, SAV2177 type AMED_6781 e3632bc149b94ca91f1bc4c0af261da5 279 Gene3D G3DSA:3.40.50.150 13 279 5.1E-96 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_2983 4825e1eec3600509d388e86cfc3c9424 158 Gene3D G3DSA:1.10.10.10 19 141 1.7E-22 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2983 4825e1eec3600509d388e86cfc3c9424 158 SUPERFAMILY SSF46785 14 142 8.61E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2983 4825e1eec3600509d388e86cfc3c9424 158 SMART SM00347 30 129 3.7E-9 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_2983 4825e1eec3600509d388e86cfc3c9424 158 Pfam PF12802 MarR family 47 92 4.6E-12 T 19-04-2016 AMED_2983 4825e1eec3600509d388e86cfc3c9424 158 PANTHER PTHR33164 17 153 1.7E-14 T 19-04-2016 AMED_1110 b4238b172e29fe5d3f6d51f0cb736208 76 Pfam PF11305 Protein of unknown function (DUF3107) 1 73 5.0E-29 T 19-04-2016 IPR021456 Protein of unknown function DUF3107 AMED_6110 3e9babd26179a614afac0e218adef79b 413 Pfam PF02371 Transposase IS116/IS110/IS902 family 277 360 1.5E-13 T 19-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMED_6110 3e9babd26179a614afac0e218adef79b 413 PANTHER PTHR40760 4 409 1.0E-67 T 19-04-2016 AMED_6110 3e9babd26179a614afac0e218adef79b 413 Pfam PF01548 Transposase 12 167 5.4E-36 T 19-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMED_6315 ca1552145424ea9fc8ba69243fbaab38 147 Gene3D G3DSA:1.25.40.10 103 138 2.9E-4 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_3675 26b69811cce7a68131cd10ea4c0271bf 259 SUPERFAMILY SSF52266 4 198 7.99E-30 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_3675 26b69811cce7a68131cd10ea4c0271bf 259 Gene3D G3DSA:3.40.50.1110 2 200 4.4E-41 T 19-04-2016 IPR013830 SGNH hydrolase-type esterase domain AMED_1483 b2de86556a1a062a47e9f3c828cd1d46 202 PANTHER PTHR14136 33 185 2.5E-19 T 19-04-2016 AMED_1483 b2de86556a1a062a47e9f3c828cd1d46 202 Pfam PF00805 Pentapeptide repeats (8 copies) 132 170 6.9E-8 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_1483 b2de86556a1a062a47e9f3c828cd1d46 202 Pfam PF00805 Pentapeptide repeats (8 copies) 32 60 0.002 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_1483 b2de86556a1a062a47e9f3c828cd1d46 202 Pfam PF13599 Pentapeptide repeats (9 copies) 64 125 4.4E-10 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_1483 b2de86556a1a062a47e9f3c828cd1d46 202 PANTHER PTHR14136:SF0 33 185 2.5E-19 T 19-04-2016 AMED_1483 b2de86556a1a062a47e9f3c828cd1d46 202 SUPERFAMILY SSF141571 23 199 7.46E-42 T 19-04-2016 AMED_4808 f825205807048a369b6c3492edf0b40c 131 Pfam PF12680 SnoaL-like domain 22 116 2.9E-10 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_4808 f825205807048a369b6c3492edf0b40c 131 SUPERFAMILY SSF54427 18 118 6.79E-13 T 19-04-2016 IPR032710 NTF2-like domain AMED_4808 f825205807048a369b6c3492edf0b40c 131 Gene3D G3DSA:3.10.450.50 17 117 1.1E-9 T 19-04-2016 IPR032710 NTF2-like domain AMED_7737 e19175cf32ad62b196eb2ee237879786 68 SMART SM00834 1 42 1.6E-14 T 19-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMED_7737 e19175cf32ad62b196eb2ee237879786 68 Pfam PF09723 Zinc ribbon domain 1 40 2.2E-13 T 19-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMED_7737 e19175cf32ad62b196eb2ee237879786 68 PANTHER PTHR34404 2 68 1.3E-20 T 19-04-2016 AMED_7737 e19175cf32ad62b196eb2ee237879786 68 PANTHER PTHR34404:SF1 2 68 1.3E-20 T 19-04-2016 AMED_7737 e19175cf32ad62b196eb2ee237879786 68 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 48 6.0E-16 T 19-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain AMED_0325 e51eab2c3fca7fcf0e159ed3c18e1907 178 Pfam PF13671 AAA domain 5 141 4.3E-9 T 19-04-2016 AMED_0325 e51eab2c3fca7fcf0e159ed3c18e1907 178 SUPERFAMILY SSF52540 1 170 4.55E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0325 e51eab2c3fca7fcf0e159ed3c18e1907 178 Gene3D G3DSA:3.40.50.300 2 170 1.6E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5660 f999ab1d638626e29d5b1fd8b8ec154c 314 Gene3D G3DSA:3.40.190.10 65 174 4.4E-7 T 19-04-2016 AMED_5660 f999ab1d638626e29d5b1fd8b8ec154c 314 SUPERFAMILY SSF53850 22 41 3.53E-10 T 19-04-2016 AMED_5660 f999ab1d638626e29d5b1fd8b8ec154c 314 SUPERFAMILY SSF53850 68 223 3.53E-10 T 19-04-2016 AMED_0945 a63c1b0b47404e9ac4d590dce1e79fb9 74 Pfam PF13822 Acyl-CoA carboxylase epsilon subunit 8 66 2.8E-22 T 19-04-2016 IPR032716 Acyl-CoA carboxylase epsilon subunit AMED_1414 12958596ebb4d34038ecd7d385c03dfd 344 Pfam PF12721 RIP homotypic interaction motif 91 108 0.066 T 19-04-2016 IPR025735 RHIM domain AMED_1414 12958596ebb4d34038ecd7d385c03dfd 344 Pfam PF12721 RIP homotypic interaction motif 133 163 0.16 T 19-04-2016 IPR025735 RHIM domain AMED_2636 72a78027c1a7551933b847d8edadf24e 211 Pfam PF09347 Domain of unknown function (DUF1989) 15 179 3.5E-59 T 19-04-2016 IPR018959 Domain of unknown function DUF1989 AMED_2636 72a78027c1a7551933b847d8edadf24e 211 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 14 204 3.4E-97 T 19-04-2016 IPR017791 Urea carboxylase-associated protein 1 AMED_2636 72a78027c1a7551933b847d8edadf24e 211 PANTHER PTHR31527:SF0 15 207 1.3E-50 T 19-04-2016 AMED_2636 72a78027c1a7551933b847d8edadf24e 211 PANTHER PTHR31527 15 207 1.3E-50 T 19-04-2016 AMED_0215 5d119e4f6e4b58bea0b9d860188337c0 322 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 28 302 1.2E-23 T 19-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMED_3520 f7038cbaee482a7daf83c403b90ea343 76 Pfam PF13490 Putative zinc-finger 3 36 2.7E-11 T 19-04-2016 IPR027383 Putative zinc-finger AMED_9314 70fa8218959b8a156ede025d4226aa2d 222 PANTHER PTHR40763 10 222 1.3E-30 T 19-04-2016 AMED_9314 70fa8218959b8a156ede025d4226aa2d 222 Pfam PF08044 Domain of unknown function (DUF1707) 25 76 6.5E-19 T 19-04-2016 IPR012551 Protein of unknown function DUF1707 AMED_4381 d03475a30141ebfd305d19db9eabe43d 150 Pfam PF08592 Domain of unknown function (DUF1772) 25 145 3.4E-9 T 19-04-2016 IPR013901 Protein of unknown function DUF1772 AMED_3921 b7a79c22c96ee0082f7c37cfa32afdeb 303 SUPERFAMILY SSF103481 44 142 2.22E-11 T 19-04-2016 AMED_3921 b7a79c22c96ee0082f7c37cfa32afdeb 303 Pfam PF00892 EamA-like transporter family 11 140 2.0E-12 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_3921 b7a79c22c96ee0082f7c37cfa32afdeb 303 Pfam PF00892 EamA-like transporter family 154 287 7.5E-15 T 19-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 AMED_3921 b7a79c22c96ee0082f7c37cfa32afdeb 303 PANTHER PTHR22911 9 292 1.2E-24 T 19-04-2016 AMED_3921 b7a79c22c96ee0082f7c37cfa32afdeb 303 SUPERFAMILY SSF103481 188 289 9.81E-11 T 19-04-2016 AMED_0149 f3d6bcdb01398a6f8fc8b0b981174e3c 270 Pfam PF02517 CAAX protease self-immunity 166 254 3.1E-13 T 19-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 AMED_1017 5b708f8eb04c313ee894c36e040448c0 298 Gene3D G3DSA:1.10.340.30 113 229 3.8E-17 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_1017 5b708f8eb04c313ee894c36e040448c0 298 SUPERFAMILY SSF48150 102 283 1.74E-24 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMED_2435 bd036ec9d632ac27ab993e25e087c7e9 160 PANTHER PTHR37042:SF2 1 160 7.2E-25 T 19-04-2016 AMED_2435 bd036ec9d632ac27ab993e25e087c7e9 160 PANTHER PTHR37042 1 160 7.2E-25 T 19-04-2016 AMED_5736 fffdf23ce056a9c316b9b2bf89332fee 159 Pfam PF14325 Domain of unknown function (DUF4383) 16 139 1.5E-43 T 19-04-2016 IPR025492 Protein of unknown function DUF4383 AMED_5736 fffdf23ce056a9c316b9b2bf89332fee 159 Gene3D G3DSA:1.20.1300.10 11 102 3.7E-4 T 19-04-2016 AMED_2910 53da8089360a4847777197f53c12fa44 156 TIGRFAM TIGR00026 hi_GC_TIGR00026: deazaflavin-dependent oxidoreductase, nitroreductase family 38 148 1.3E-28 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_2910 53da8089360a4847777197f53c12fa44 156 Pfam PF04075 Domain of unknown function (DUF385) 19 149 3.7E-32 T 19-04-2016 IPR004378 Deazaflavin-dependent nitroreductase/F420H(2)-dependent quinone reductase GO:0016491|GO:0055114 AMED_2910 53da8089360a4847777197f53c12fa44 156 PANTHER PTHR39428 5 152 1.5E-41 T 19-04-2016 AMED_9211 da28094b138248daf5ceb66caacf6da7 315 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 300 4.3E-79 T 19-04-2016 IPR007296 Domain of unknown function DUF403 AMED_9211 da28094b138248daf5ceb66caacf6da7 315 PANTHER PTHR34595 1 313 4.6E-95 T 19-04-2016 AMED_5334 4a635e70dec4c826bdfce5fedde72b35 385 PANTHER PTHR34184 1 378 3.6E-114 T 19-04-2016 AMED_5334 4a635e70dec4c826bdfce5fedde72b35 385 PANTHER PTHR34184:SF4 1 378 3.6E-114 T 19-04-2016 AMED_5334 4a635e70dec4c826bdfce5fedde72b35 385 Pfam PF03773 Predicted permease 4 315 3.1E-81 T 19-04-2016 IPR005524 Predicted permease DUF318 AMED_9335 359aad9a6cd8f2abc5f65b9fad2a8f19 177 SUPERFAMILY SSF82607 17 99 4.58E-6 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_9335 359aad9a6cd8f2abc5f65b9fad2a8f19 177 Gene3D G3DSA:3.30.1310.10 1 99 1.1E-8 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_9335 359aad9a6cd8f2abc5f65b9fad2a8f19 177 Pfam PF02575 YbaB/EbfC DNA-binding family 12 98 1.0E-9 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMED_1199 e66244e253dca33b5b5f32de7ceb4267 242 Gene3D G3DSA:3.30.450.20 81 159 3.0E-7 T 19-04-2016 AMED_7075 f7aa4cb37cfb9758afc423396eb2aa93 261 Pfam PF13398 Peptidase M50B-like 50 250 5.2E-56 T 19-04-2016 AMED_6504 4e7ecfd9caa9f2f76e0c46169d8c9c56 283 Pfam PF12679 ABC-2 family transporter protein 88 282 1.9E-9 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_5493 42b599c7e424f6cc5fb2584d63b43b51 269 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 74 120 1.2E-12 T 19-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 AMED_5432 9fee8af4bd3c82a1e38ef15cbba0582b 155 Gene3D G3DSA:3.30.530.20 4 130 4.0E-16 T 19-04-2016 IPR023393 START-like domain AMED_5432 9fee8af4bd3c82a1e38ef15cbba0582b 155 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 4 145 2.1E-11 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_5432 9fee8af4bd3c82a1e38ef15cbba0582b 155 SUPERFAMILY SSF55961 1 150 8.92E-34 T 19-04-2016 AMED_8164 2f17685b233d1ac7bdaa551c1422f8b1 413 TIGRFAM TIGR04267 mod_HExxH: HEXXH motif domain 13 378 3.4E-106 T 19-04-2016 IPR026337 HEXXH motif domain AMED_2383 0502baa5bae5765330e35481376029c0 437 Pfam PF03993 Domain of Unknown Function (DUF349) 279 352 3.3E-20 T 19-04-2016 IPR007139 Protein of unknown function DUF349 AMED_2383 0502baa5bae5765330e35481376029c0 437 Pfam PF03993 Domain of Unknown Function (DUF349) 202 274 2.1E-22 T 19-04-2016 IPR007139 Protein of unknown function DUF349 AMED_2383 0502baa5bae5765330e35481376029c0 437 Pfam PF03993 Domain of Unknown Function (DUF349) 125 198 3.9E-13 T 19-04-2016 IPR007139 Protein of unknown function DUF349 AMED_0861 811005fc3f9b13a78645eec3a6b3f69c 374 SUPERFAMILY SSF57997 89 262 1.37E-5 T 19-04-2016 AMED_4549 d09eeb1d22ade325bd806dd83039726c 356 PANTHER PTHR24421:SF22 140 356 8.6E-44 T 19-04-2016 AMED_4549 d09eeb1d22ade325bd806dd83039726c 356 Pfam PF07730 Histidine kinase 178 244 8.3E-18 T 19-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMED_4549 d09eeb1d22ade325bd806dd83039726c 356 PANTHER PTHR24421 140 356 8.6E-44 T 19-04-2016 AMED_9204 b8f2e48c2b3fb6f26fa446a5f1358e8a 191 PANTHER PTHR32011 25 187 4.8E-36 T 19-04-2016 AMED_6605 762d79f1f90d588b871693fa5b7277e7 217 Gene3D G3DSA:2.40.260.10 117 194 6.3E-7 T 19-04-2016 IPR023365 Sortase domain AMED_6605 762d79f1f90d588b871693fa5b7277e7 217 Pfam PF04203 Sortase family 113 214 1.1E-10 T 19-04-2016 IPR005754 Sortase family AMED_6605 762d79f1f90d588b871693fa5b7277e7 217 SUPERFAMILY SSF63817 66 214 5.1E-11 T 19-04-2016 IPR023365 Sortase domain AMED_9306 b1e3c0b16e6d46d3782f23ddeb3602a1 130 SUPERFAMILY SSF46785 4 128 4.63E-11 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9306 b1e3c0b16e6d46d3782f23ddeb3602a1 130 Gene3D G3DSA:1.10.10.10 3 128 1.5E-12 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_4048 ecd7b23cae05c65537c7ac320bf36419 179 SUPERFAMILY SSF55144 12 177 3.66E-16 T 19-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase AMED_4048 ecd7b23cae05c65537c7ac320bf36419 179 Gene3D G3DSA:3.90.1140.10 24 178 5.2E-13 T 19-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase AMED_4048 ecd7b23cae05c65537c7ac320bf36419 179 Pfam PF13563 2'-5' RNA ligase superfamily 24 162 6.0E-20 T 19-04-2016 AMED_7481 c9894e0ea0147890672b16c2a93bc3ef 111 PANTHER PTHR40630 3 110 8.6E-26 T 19-04-2016 AMED_7481 c9894e0ea0147890672b16c2a93bc3ef 111 Pfam PF11338 Protein of unknown function (DUF3140) 13 101 1.9E-27 T 19-04-2016 IPR021487 Protein of unknown function DUF3140 AMED_5872 1b984b27c85a0a0d95d6d4e8a7c597b4 351 SUPERFAMILY SSF54001 231 348 3.6E-41 T 19-04-2016 AMED_5872 1b984b27c85a0a0d95d6d4e8a7c597b4 351 PANTHER PTHR21666 40 47 2.2E-38 T 19-04-2016 AMED_5872 1b984b27c85a0a0d95d6d4e8a7c597b4 351 PANTHER PTHR21666 242 348 2.2E-38 T 19-04-2016 AMED_5872 1b984b27c85a0a0d95d6d4e8a7c597b4 351 Gene3D G3DSA:3.90.1720.10 232 348 4.7E-45 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_5872 1b984b27c85a0a0d95d6d4e8a7c597b4 351 Pfam PF00877 NlpC/P60 family 251 343 1.8E-25 T 19-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_2242 22ce8453f53cfe29b1991e3a179a5b91 157 Gene3D G3DSA:3.40.1000.10 34 152 1.6E-4 T 19-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich AMED_4351 a67a22d05282637cb7a262eab7fbe02c 367 Gene3D G3DSA:3.40.50.1820 60 352 1.2E-22 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4351 a67a22d05282637cb7a262eab7fbe02c 367 Pfam PF12146 Serine aminopeptidase, S33 101 193 2.6E-9 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMED_4351 a67a22d05282637cb7a262eab7fbe02c 367 SUPERFAMILY SSF53474 59 351 3.11E-24 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_4054 d2d2395fc221e4005424a572b9af07ed 389 Gene3D G3DSA:3.40.710.10 35 387 1.9E-66 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4054 d2d2395fc221e4005424a572b9af07ed 389 Pfam PF00144 Beta-lactamase 43 375 5.8E-56 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_4054 d2d2395fc221e4005424a572b9af07ed 389 SUPERFAMILY SSF56601 41 386 2.15E-67 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4054 d2d2395fc221e4005424a572b9af07ed 389 PANTHER PTHR22935 40 376 1.3E-55 T 19-04-2016 AMED_8007 4fcc00796e0682eaa425e10bf47b47cd 756 SUPERFAMILY SSF53474 548 625 3.0E-6 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_5458 e96f1d95b8dac7c0a1e6222e2857ae17 70 Pfam PF09851 Short C-terminal domain 41 66 3.3E-9 T 19-04-2016 IPR018649 SHOCT domain AMED_7226 53e59db4d808580b57c1f6aa73345dee 51 Gene3D G3DSA:3.40.50.970 4 46 1.1E-9 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_7226 53e59db4d808580b57c1f6aa73345dee 51 Pfam PF00676 Dehydrogenase E1 component 5 45 2.0E-6 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMED_7226 53e59db4d808580b57c1f6aa73345dee 51 SUPERFAMILY SSF52518 3 46 7.62E-9 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMED_4425 d3fd9ccf7778899b0f0868ce30f43d68 371 PANTHER PTHR22935:SF77 2 351 3.3E-60 T 19-04-2016 AMED_4425 d3fd9ccf7778899b0f0868ce30f43d68 371 SUPERFAMILY SSF56601 3 361 5.11E-75 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_4425 d3fd9ccf7778899b0f0868ce30f43d68 371 PANTHER PTHR22935 2 351 3.3E-60 T 19-04-2016 AMED_4425 d3fd9ccf7778899b0f0868ce30f43d68 371 Pfam PF00144 Beta-lactamase 4 360 2.6E-55 T 19-04-2016 IPR001466 Beta-lactamase-related AMED_4425 d3fd9ccf7778899b0f0868ce30f43d68 371 Gene3D G3DSA:3.40.710.10 2 358 1.7E-70 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6507 7acf93adfd48da92848b4145c8000a7b 249 SUPERFAMILY SSF52091 10 117 5.49E-7 T 19-04-2016 IPR002645 STAS domain AMED_6507 7acf93adfd48da92848b4145c8000a7b 249 Gene3D G3DSA:3.30.750.24 15 117 1.2E-8 T 19-04-2016 IPR002645 STAS domain AMED_5147 7e974dd6a5496f3052d004abefcc814e 143 Gene3D G3DSA:1.10.10.10 15 140 6.7E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5147 7e974dd6a5496f3052d004abefcc814e 143 SMART SM00347 32 127 8.8E-12 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_5147 7e974dd6a5496f3052d004abefcc814e 143 SUPERFAMILY SSF46785 14 127 1.69E-25 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_5147 7e974dd6a5496f3052d004abefcc814e 143 PANTHER PTHR33164 16 119 1.6E-15 T 19-04-2016 AMED_5147 7e974dd6a5496f3052d004abefcc814e 143 Pfam PF12802 MarR family 38 95 3.2E-13 T 19-04-2016 AMED_5147 7e974dd6a5496f3052d004abefcc814e 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 19-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site AMED_1662 fbf5730bb9304c34728249204a97cf43 424 PANTHER PTHR37043 32 407 1.8E-22 T 19-04-2016 AMED_1662 fbf5730bb9304c34728249204a97cf43 424 Pfam PF02720 Domain of unknown function (DUF222) 50 331 2.2E-13 T 19-04-2016 IPR003870 Domain of unknown function DUF222 AMED_3491 b33f4c9a057b5786196cd66900821d23 388 SUPERFAMILY SSF103473 10 356 3.92E-14 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_3491 b33f4c9a057b5786196cd66900821d23 388 PANTHER PTHR23523 11 368 1.9E-51 T 19-04-2016 AMED_7406 33b3f81e10cbf002b187ca85b040b5a4 313 Pfam PF01186 Lysyl oxidase 212 279 3.6E-11 T 19-04-2016 IPR001695 Lysyl oxidase GO:0005507|GO:0016641|GO:0055114 AMED_7406 33b3f81e10cbf002b187ca85b040b5a4 313 Pfam PF01186 Lysyl oxidase 134 181 2.7E-5 T 19-04-2016 IPR001695 Lysyl oxidase GO:0005507|GO:0016641|GO:0055114 AMED_2434 713f731ecfc72f83fb4adbdc43c8cbc4 162 PANTHER PTHR37042 4 161 3.6E-16 T 19-04-2016 AMED_2913 8f22f25e11a30353cc5de9e30e262bc9 119 SUPERFAMILY SSF55961 8 91 1.81E-10 T 19-04-2016 AMED_2913 8f22f25e11a30353cc5de9e30e262bc9 119 Gene3D G3DSA:3.30.530.20 9 91 3.4E-4 T 19-04-2016 IPR023393 START-like domain AMED_6015 78141b369692cc1e51057547f2919de7 386 PANTHER PTHR40074 1 376 1.0E-20 T 19-04-2016 AMED_6015 78141b369692cc1e51057547f2919de7 386 Pfam PF01757 Acyltransferase family 24 360 5.1E-28 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_6162 6d757d5bbabbcde40a1135f421b7ad25 770 Gene3D G3DSA:3.40.50.300 401 608 3.1E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_6162 6d757d5bbabbcde40a1135f421b7ad25 770 SUPERFAMILY SSF52540 386 603 1.38E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5850 f38d3c7cdff1756bd6730e155ff8742c 495 Gene3D G3DSA:2.40.10.10 5 82 3.8E-5 T 19-04-2016 AMED_5850 f38d3c7cdff1756bd6730e155ff8742c 495 Pfam PF13365 Trypsin-like peptidase domain 12 165 6.6E-9 T 19-04-2016 AMED_5850 f38d3c7cdff1756bd6730e155ff8742c 495 SUPERFAMILY SSF50494 3 206 3.0E-15 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMED_8016 a35f6008becee3d4166bc7a9721ebd60 101 Pfam PF12005 Protein of unknown function (DUF3499) 1 98 7.8E-38 T 19-04-2016 IPR021888 Protein of unknown function DUF3499 AMED_2679 2fdd6259bf49bc3ca016586dfdfcdfd2 183 Gene3D G3DSA:1.20.144.10 25 171 1.9E-12 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2679 2fdd6259bf49bc3ca016586dfdfcdfd2 183 SUPERFAMILY SSF48317 8 173 2.49E-17 T 19-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMED_2158 5e5ba1af7728d75d5556752041774727 215 PANTHER PTHR30353 36 202 1.8E-25 T 19-04-2016 IPR032818 DedA family AMED_2158 5e5ba1af7728d75d5556752041774727 215 Pfam PF09335 SNARE associated Golgi protein 41 163 2.7E-18 T 19-04-2016 IPR032816 SNARE associated Golgi protein AMED_4202 a0bd35bc63f1a29c2fd69c62fda54940 113 Pfam PF13564 DoxX-like family 7 107 4.4E-17 T 19-04-2016 IPR032808 DoxX family AMED_0909 6df23f1498e88c7133d47b3328118344 139 Pfam PF14108 Domain of unknown function (DUF4281) 2 127 3.6E-34 T 19-04-2016 IPR025461 ABA DEFICIENT 4-like AMED_7528 392e3e970b2c229573cc244e2da8a939 165 SUPERFAMILY SSF75304 123 161 5.63E-5 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMED_8461 a068b58923be0418a2b8f4a495549f22 396 Pfam PF09594 Protein of unknown function (DUF2029) 53 289 6.8E-50 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_1491 ecd3357f276271c66653c152a1e5cb95 400 Gene3D G3DSA:3.40.50.300 25 69 8.0E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1491 ecd3357f276271c66653c152a1e5cb95 400 SUPERFAMILY SSF52540 31 187 2.47E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_5525 cdf0c6561e44883715b652acfbf4535d 168 Pfam PF01636 Phosphotransferase enzyme family 11 119 8.8E-10 T 19-04-2016 IPR002575 Aminoglycoside phosphotransferase AMED_5525 cdf0c6561e44883715b652acfbf4535d 168 SUPERFAMILY SSF56112 13 129 2.89E-11 T 19-04-2016 IPR011009 Protein kinase-like domain AMED_5525 cdf0c6561e44883715b652acfbf4535d 168 Gene3D G3DSA:3.90.1200.10 17 125 5.5E-11 T 19-04-2016 AMED_6640 1123424da288c0abfe753f7659655138 501 Pfam PF13777 Domain of unknown function (DUF4173) 264 454 9.3E-57 T 19-04-2016 IPR025231 Domain of unknown function DUF4173 AMED_4178 221cdbc3227de2bf395c1289a9149c82 199 Pfam PF09860 Uncharacterized protein conserved in bacteria (DUF2087) 123 191 4.3E-25 T 19-04-2016 IPR018656 Domain of unknown function DUF2087 AMED_4197 951484b8a4ee5b271c9422f288d95703 299 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 9 259 4.4E-79 T 19-04-2016 IPR014145 DNA ligase D, polymerase domain AMED_0524 a31c2177af4c8f6d58a189607d034b2f 285 PANTHER PTHR10371 49 220 3.3E-49 T 19-04-2016 AMED_0524 a31c2177af4c8f6d58a189607d034b2f 285 Gene3D G3DSA:3.40.30.10 121 212 1.2E-7 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_0524 a31c2177af4c8f6d58a189607d034b2f 285 SUPERFAMILY SSF52833 49 217 2.57E-43 T 19-04-2016 IPR012336 Thioredoxin-like fold AMED_0524 a31c2177af4c8f6d58a189607d034b2f 285 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 58 209 3.6E-45 T 19-04-2016 AMED_6289 95aaaf22e1306c66524aa279d75d3994 168 Pfam PF13707 RloB-like protein 1 166 4.0E-33 T 19-04-2016 IPR025591 RloB-like protein AMED_7080 0ce84b58f9ef0afd81ddf19ea9b0cea2 124 SUPERFAMILY SSF159238 1 124 1.14E-29 T 19-04-2016 IPR023159 SO1590-like domain AMED_7080 0ce84b58f9ef0afd81ddf19ea9b0cea2 124 Pfam PF11528 Protein of unknown function (DUF3224) 5 122 3.4E-31 T 19-04-2016 IPR021607 Protein of unknown function DUF3224 AMED_7080 0ce84b58f9ef0afd81ddf19ea9b0cea2 124 Gene3D G3DSA:2.40.350.10 1 124 5.5E-35 T 19-04-2016 IPR023159 SO1590-like domain AMED_2231 92d725f2603eb3edfe3c07ca9529cc23 100 SUPERFAMILY SSF140453 4 99 5.89E-10 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_2231 92d725f2603eb3edfe3c07ca9529cc23 100 Gene3D G3DSA:1.10.287.1060 5 99 1.2E-14 T 19-04-2016 AMED_2984 fac1017e7f56456d63f9c21d286c4726 153 SUPERFAMILY SSF50475 11 143 1.2E-18 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_2984 fac1017e7f56456d63f9c21d286c4726 153 Gene3D G3DSA:2.30.110.10 10 142 2.1E-19 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_3885 f8d205d71453481cb0109291a0bd3aa2 114 SUPERFAMILY SSF52091 22 111 6.08E-7 T 19-04-2016 IPR002645 STAS domain AMED_3885 f8d205d71453481cb0109291a0bd3aa2 114 Gene3D G3DSA:3.30.750.24 21 112 2.6E-8 T 19-04-2016 IPR002645 STAS domain AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 32 50 2.0E-45 T 19-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 64 86 2.0E-45 T 19-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 13 32 2.0E-45 T 19-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 PRINTS PR01837 MgtC/SapB protein signature 91 115 2.0E-45 T 19-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 PANTHER PTHR33778:SF3 1 231 1.5E-91 T 19-04-2016 AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 Pfam PF02308 MgtC family 14 137 6.6E-36 T 19-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMED_4956 4804aec1a4b465ef9d64e47b2ab5b76b 234 PANTHER PTHR33778 1 231 1.5E-91 T 19-04-2016 AMED_5227 8475325a85dece5714cd33ee356c7218 497 PANTHER PTHR33908 1 359 8.7E-18 T 19-04-2016 AMED_5227 8475325a85dece5714cd33ee356c7218 497 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 55 215 2.1E-22 T 19-04-2016 AMED_5595 05c453ff3988d69921929ee068ecff6b 56 Pfam PF09363 XFP C-terminal domain 1 54 1.5E-5 T 19-04-2016 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 AMED_4553 2a48605453f78e07d50e8bf1280b8e91 178 Pfam PF03713 Domain of unknown function (DUF305) 37 174 4.0E-13 T 19-04-2016 IPR005183 Domain of unknown function DUF305 AMED_4553 2a48605453f78e07d50e8bf1280b8e91 178 Gene3D G3DSA:1.20.1260.10 30 172 1.1E-16 T 19-04-2016 IPR012347 Ferritin-related AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.1E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 5.1E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 5.1E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 5.1E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 5.1E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 5.1E-36 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 SUPERFAMILY SSF51735 15 258 1.29E-75 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PANTHER PTHR24322 165 196 2.8E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 PANTHER PTHR24322 20 149 2.8E-41 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 Gene3D G3DSA:3.40.50.720 5 258 1.6E-82 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 257 4.1E-60 T 19-04-2016 AMED_2312 af284d4f066800353ab3c4be44ced9f4 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 186 4.1E-4 T 19-04-2016 AMED_9301 2fd0d15ce8cae4ec3b45380245aada1c 199 Pfam PF12079 Protein of unknown function (DUF3558) 16 194 2.7E-27 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_2538 50f278e97f6a7c45a1961f1ddf72a47c 205 Pfam PF01794 Ferric reductase like transmembrane component 49 152 8.8E-8 T 19-04-2016 IPR013130 Ferric reductase transmembrane component-like domain AMED_0294 01cb6f947097d126349513c8f0c018fa 143 Gene3D G3DSA:3.10.450.50 15 121 1.4E-15 T 19-04-2016 IPR032710 NTF2-like domain AMED_0294 01cb6f947097d126349513c8f0c018fa 143 SUPERFAMILY SSF54427 16 122 2.87E-13 T 19-04-2016 IPR032710 NTF2-like domain AMED_4321 b83074d96d959e63cb468002bce9095d 235 Pfam PF13628 Domain of unknown function (DUF4142) 81 213 3.5E-18 T 19-04-2016 IPR025419 Domain of unknown function DUF4142 AMED_7434 0c65901debc7bebd620327ba34e9dbf6 476 Pfam PF15892 BNR repeat-containing family member 71 379 1.1E-84 T 19-04-2016 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 SUPERFAMILY SSF46785 8 140 5.6E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 Pfam PF01047 MarR family 36 94 2.5E-16 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 SMART SM00347 29 129 9.8E-19 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 Gene3D G3DSA:1.10.10.10 4 137 2.5E-27 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 PANTHER PTHR33164:SF12 17 152 7.8E-23 T 19-04-2016 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 PANTHER PTHR33164 17 152 7.8E-23 T 19-04-2016 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 2.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 2.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 2.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_9178 c6c70ce1f83e59e04842463d3980f6dc 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 2.9E-6 T 19-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMED_7382 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 57 363 1.1E-62 T 19-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMED_7382 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 SUPERFAMILY SSF51445 1 392 1.19E-75 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMED_7382 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 Gene3D G3DSA:3.20.20.80 14 391 3.5E-92 T 19-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 AMED_7382 6b1c87a32b2c9f5afae7a9e2ad5603e1 394 PANTHER PTHR31297 67 358 1.0E-12 T 19-04-2016 AMED_3265 f34775f333031b023b76bd0dfbd39ff7 76 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 7 64 1.6E-9 T 19-04-2016 IPR018691 Protein of unknown function DUF2188 AMED_5874 5c2bbffc32b22c0568cc250147c3db60 66 Pfam PF11272 Protein of unknown function (DUF3072) 10 64 1.3E-32 T 19-04-2016 IPR021425 Protein of unknown function DUF3072 AMED_7128 bc0d2f14046908d0322b5440265eae52 117 Gene3D G3DSA:3.10.180.10 52 115 5.3E-7 T 19-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMED_8412 71ece5cf6232327a0b58e0efee82b184 409 Pfam PF13529 Peptidase_C39 like family 212 363 3.9E-32 T 19-04-2016 AMED_1098 1923a68586a9c9e608881b8942255874 364 Pfam PF10094 Uncharacterized protein conserved in bacteria (DUF2332) 10 361 6.2E-111 T 19-04-2016 IPR011200 Uncharacterised conserved protein UCP012608 AMED_8439 a3ea49d38e810fa1ce0572192402651c 186 Pfam PF12079 Protein of unknown function (DUF3558) 12 141 3.5E-12 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_6676 7273433ded11db674416165bdf833335 408 Pfam PF13576 Pentapeptide repeats (9 copies) 308 355 1.4E-8 T 19-04-2016 IPR001646 Pentapeptide repeat AMED_6676 7273433ded11db674416165bdf833335 408 SUPERFAMILY SSF141571 265 340 4.71E-6 T 19-04-2016 AMED_4390 46f0fe601489489775a1a64c03e6f028 216 PANTHER PTHR30086 11 215 1.6E-16 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_4390 46f0fe601489489775a1a64c03e6f028 216 Pfam PF01810 LysE type translocator 27 215 4.2E-15 T 19-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 AMED_3583 92941e53477a01ef9d37e6b388361931 402 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 7 27 6.8E-4 T 19-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMED_3583 92941e53477a01ef9d37e6b388361931 402 Pfam PF07394 Protein of unknown function (DUF1501) 217 399 4.6E-24 T 19-04-2016 IPR010869 Protein of unknown function DUF1501 AMED_8534 aa8b5060762c772c3691d0b593735e75 256 PANTHER PTHR30151 3 256 3.3E-50 T 19-04-2016 AMED_8534 aa8b5060762c772c3691d0b593735e75 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 232 2.4E-20 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8534 aa8b5060762c772c3691d0b593735e75 256 SUPERFAMILY SSF161098 48 232 5.01E-27 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_8534 aa8b5060762c772c3691d0b593735e75 256 Gene3D G3DSA:1.10.3720.10 48 244 3.2E-21 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMED_6112 091ee4b0550971afa8cac4808b2ef1c1 157 PIRSF PIRSF021513 1 157 4.2E-38 T 19-04-2016 IPR016791 Rubromycin-type polyketide biosynthesis protein, GrhN/RubW, predicted AMED_3142 4d12c04a3f6a7e1978d09eb82b3634d2 150 PANTHER PTHR13078 7 146 2.5E-40 T 19-04-2016 AMED_3142 4d12c04a3f6a7e1978d09eb82b3634d2 150 Gene3D G3DSA:3.10.129.10 9 147 1.8E-34 T 19-04-2016 IPR029069 HotDog domain AMED_3142 4d12c04a3f6a7e1978d09eb82b3634d2 150 Pfam PF01575 MaoC like domain 10 119 1.8E-25 T 19-04-2016 IPR002539 MaoC-like domain AMED_3142 4d12c04a3f6a7e1978d09eb82b3634d2 150 SUPERFAMILY SSF54637 7 147 2.24E-37 T 19-04-2016 IPR029069 HotDog domain AMED_5590 ab0b9c7498761aa8debd2af3e645588c 118 Gene3D G3DSA:3.30.160.100 1 99 5.2E-5 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_5590 ab0b9c7498761aa8debd2af3e645588c 118 SUPERFAMILY SSF69754 1 93 3.14E-6 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMED_2976 df997e1d6a60b2cfda8629c8b96bf613 191 Pfam PF04203 Sortase family 55 189 5.4E-8 T 19-04-2016 IPR005754 Sortase family AMED_2976 df997e1d6a60b2cfda8629c8b96bf613 191 SUPERFAMILY SSF63817 77 188 5.49E-8 T 19-04-2016 IPR023365 Sortase domain AMED_7098 372bf6bdd584343f765466c2bf3dd331 221 Pfam PF08666 SAF domain 64 121 2.5E-5 T 19-04-2016 IPR013974 SAF domain AMED_6905 ca81360a6a44f74316f248d3da07258f 149 Pfam PF14016 Protein of unknown function (DUF4232) 15 143 2.4E-21 T 19-04-2016 IPR025326 Protein of unknown function DUF4232 AMED_6307 d600d148529798f645053e34116a11b3 307 Pfam PF13349 Putative adhesin 187 278 5.3E-7 T 19-04-2016 IPR025164 Putative adhesin AMED_2211 8b3760de5447f3fb10c892ae1e33ad16 204 Gene3D G3DSA:3.40.50.300 23 192 1.9E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2211 8b3760de5447f3fb10c892ae1e33ad16 204 SUPERFAMILY SSF52540 43 194 1.85E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_0401 d69dd9df6beae544d1763e08d2d5f1fc 84 Pfam PF04149 Domain of unknown function (DUF397) 22 76 1.1E-15 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_1688 01a9f49aba00c4e4c659553dfc078b32 93 Pfam PF04149 Domain of unknown function (DUF397) 22 79 2.7E-12 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_3819 f4ff2332eb947350a4a4b38e8f680c8d 183 SUPERFAMILY SSF54427 7 162 3.79E-31 T 19-04-2016 IPR032710 NTF2-like domain AMED_3819 f4ff2332eb947350a4a4b38e8f680c8d 183 Gene3D G3DSA:3.10.450.50 12 139 7.2E-30 T 19-04-2016 IPR032710 NTF2-like domain AMED_3819 f4ff2332eb947350a4a4b38e8f680c8d 183 Pfam PF13577 SnoaL-like domain 12 129 1.1E-20 T 19-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain AMED_7727 6451e5c5dca3b322245fb8fd68609839 259 Gene3D G3DSA:3.40.1490.10 157 254 9.1E-14 T 19-04-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AMED_7727 6451e5c5dca3b322245fb8fd68609839 259 SUPERFAMILY SSF102462 156 252 1.53E-15 T 19-04-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 AMED_7727 6451e5c5dca3b322245fb8fd68609839 259 Pfam PF01981 Peptidyl-tRNA hydrolase PTH2 160 250 1.8E-6 T 19-04-2016 IPR002833 Peptidyl-tRNA hydrolase, PTH2 GO:0004045 MetaCyc: PWY-6308 AMED_4797 ba31bcd55d00528d34413abd37c09edb 131 Gene3D G3DSA:3.40.50.280 1 126 3.4E-19 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4797 ba31bcd55d00528d34413abd37c09edb 131 SUPERFAMILY SSF52242 1 127 5.76E-19 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_4797 ba31bcd55d00528d34413abd37c09edb 131 Pfam PF02310 B12 binding domain 1 90 5.3E-13 T 19-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 AMED_1743 d539b358ab104a65f1b1d1c6b02c8bf5 167 Pfam PF12028 Protein of unknown function (DUF3515) 8 163 1.5E-45 T 19-04-2016 IPR021903 Protein of unknown function DUF3515 AMED_5549 ac1c9c651611bfe8955459fc1644273c 447 SUPERFAMILY SSF140459 89 216 8.37E-6 T 19-04-2016 AMED_5155 22ffe34cb91d5e74c871b95e511af47b 101 SUPERFAMILY SSF141099 3 78 3.92E-20 T 19-04-2016 IPR015073 Atu1913-like AMED_5155 22ffe34cb91d5e74c871b95e511af47b 101 Pfam PF08980 Domain of unknown function (DUF1883) 2 77 3.0E-22 T 19-04-2016 IPR015073 Atu1913-like AMED_5155 22ffe34cb91d5e74c871b95e511af47b 101 Gene3D G3DSA:4.10.1210.10 1 95 4.1E-29 T 19-04-2016 IPR015073 Atu1913-like AMED_9325 2c565c8cbea4f460c1b3f74fb95f888d 247 Pfam PF14011 EspG family 7 235 3.9E-35 T 19-04-2016 IPR025734 EspG family AMED_7467 b5b7b7243db3854c10dda09a71cfa7b1 125 Pfam PF05331 Protein of unknown function (DUF742) 13 125 1.3E-29 T 19-04-2016 IPR007995 Protein of unknown function DUF742 AMED_7467 b5b7b7243db3854c10dda09a71cfa7b1 125 PANTHER PTHR36221 16 125 9.2E-24 T 19-04-2016 AMED_1844 fdf0bdebd64ff1caa8b1b30e3092a517 98 Pfam PF02656 Domain of unknown function (DUF202) 6 65 7.7E-7 T 19-04-2016 IPR003807 Domain of unknown function DUF202 AMED_4712 6f15f6852774ee0c671cf095404c609e 164 Gene3D G3DSA:2.30.110.10 10 150 1.2E-27 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_4712 6f15f6852774ee0c671cf095404c609e 164 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 16 91 4.5E-7 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMED_4712 6f15f6852774ee0c671cf095404c609e 164 SUPERFAMILY SSF50475 20 144 2.24E-17 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMED_1490 8159e898d3abce975ddf81711518d8bf 601 Pfam PF00350 Dynamin family 51 191 8.2E-6 T 19-04-2016 IPR022812 Dynamin superfamily AMED_1490 8159e898d3abce975ddf81711518d8bf 601 Gene3D G3DSA:3.40.50.300 123 239 2.2E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1490 8159e898d3abce975ddf81711518d8bf 601 Gene3D G3DSA:3.40.50.300 35 81 2.2E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_1490 8159e898d3abce975ddf81711518d8bf 601 SUPERFAMILY SSF52540 41 264 2.0E-19 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_2472 3efb9cdba35c07fd4e6c526512c75435 67 Pfam PF04149 Domain of unknown function (DUF397) 8 60 1.2E-21 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_1141 828b5a17d64b207601f323aa021ef678 379 Pfam PF14258 Domain of unknown function (DUF4350) 51 112 4.9E-10 T 19-04-2016 IPR025646 Domain of unknown function DUF4350 AMED_4422 cbe9fe60e1ff85d84b87401fde437dae 192 Pfam PF12385 Papain-like cysteine protease AvrRpt2 34 171 1.1E-18 T 19-04-2016 IPR022118 Peptidase C70, AvrRpt2 KEGG: 00900+3.4.22.- AMED_4422 cbe9fe60e1ff85d84b87401fde437dae 192 Gene3D G3DSA:3.90.70.10 91 189 8.5E-6 T 19-04-2016 AMED_1904 856af035030bfdf1255513966fd2783c 166 Pfam PF11937 Protein of unknown function (DUF3455) 37 163 2.9E-21 T 19-04-2016 IPR021851 Protein of unknown function DUF3455 AMED_5629 e2148eb42d5e4fae7cde5520e5102855 223 Pfam PF14099 Polysaccharide lyase 71 206 7.1E-9 T 19-04-2016 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 AMED_6071 33e75dc88835ce0b2c41d9889c10093c 582 Pfam PF09471 IgA Peptidase M64 33 289 7.8E-47 T 19-04-2016 IPR019026 Peptidase M64, IgA AMED_1886 3be230d2e80220d772ae54824d969898 347 PANTHER PTHR32196 10 347 7.6E-71 T 19-04-2016 AMED_1886 3be230d2e80220d772ae54824d969898 347 PANTHER PTHR32196:SF22 10 347 7.6E-71 T 19-04-2016 AMED_1886 3be230d2e80220d772ae54824d969898 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 332 3.4E-49 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_8548 fa8970513bd009011f6d9a114554bb7b 59 Gene3D G3DSA:1.25.40.20 8 50 3.7E-4 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMED_8483 ff3848e7aec11a99322c464521eb6ede 75 Pfam PF10745 Protein of unknown function (DUF2530) 3 74 2.3E-28 T 19-04-2016 IPR019681 Protein of unknown function DUF2530 AMED_2399 00ef72197358176c1b6917def7bb37d6 69 Pfam PF00893 Small Multidrug Resistance protein 1 37 1.9E-5 T 19-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 AMED_5735 22cc6eb8104518608f0ddcb89f303d0d 129 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 12 120 7.9E-27 T 19-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AMED_4505 71c2ea427660f1b4ff672ae39c04757f 278 Pfam PF03780 Asp23 family, cell envelope-related function 186 273 1.8E-8 T 19-04-2016 IPR005531 Alkaline shock protein Asp23 AMED_4924 8399484904e7251ccc11b13d43d02f90 187 Gene3D G3DSA:1.10.10.10 115 142 2.1E-6 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_6203 50f3656f8a16b44ea1d2cbdac7c5f0a8 288 SUPERFAMILY SSF56601 67 268 2.02E-17 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6203 50f3656f8a16b44ea1d2cbdac7c5f0a8 288 Gene3D G3DSA:3.40.710.10 122 263 3.8E-15 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMED_6203 50f3656f8a16b44ea1d2cbdac7c5f0a8 288 Pfam PF13354 Beta-lactamase enzyme family 122 229 3.9E-8 T 19-04-2016 AMED_0309 aa55611b10926c1090706588b45c4108 67 Pfam PF14013 MT0933-like antitoxin protein 10 56 5.3E-13 T 19-04-2016 IPR028037 Antitoxin Rv0909/MT0933 AMED_2465 a6fcb12633284b6a3f9e64a6e05c9f2b 116 Pfam PF01638 HxlR-like helix-turn-helix 14 100 7.1E-31 T 19-04-2016 IPR002577 Helix-turn-helix, HxlR type AMED_2465 a6fcb12633284b6a3f9e64a6e05c9f2b 116 PANTHER PTHR33204 1 105 2.1E-37 T 19-04-2016 AMED_2465 a6fcb12633284b6a3f9e64a6e05c9f2b 116 Gene3D G3DSA:1.10.10.10 2 102 7.7E-40 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_2465 a6fcb12633284b6a3f9e64a6e05c9f2b 116 SUPERFAMILY SSF46785 2 102 1.44E-31 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMED_7756 8717f0137840ed80bb59a4440b21155c 154 Pfam PF11066 Protein of unknown function (DUF2867) 6 145 3.2E-28 T 19-04-2016 IPR021295 Protein of unknown function DUF2867 AMED_4368 26ccc0deba582b76f78debf97886e48b 352 PANTHER PTHR33840 1 278 5.3E-98 T 19-04-2016 AMED_4368 26ccc0deba582b76f78debf97886e48b 352 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 3 264 7.5E-83 T 19-04-2016 IPR018712 Domain of unknown function DUF2235 AMED_4368 26ccc0deba582b76f78debf97886e48b 352 PANTHER PTHR33840:SF1 1 278 5.3E-98 T 19-04-2016 AMED_4631 93a1de74f0b3dfcf4e0c2ee9ca9b6405 245 Gene3D G3DSA:3.30.530.20 9 136 2.5E-15 T 19-04-2016 IPR023393 START-like domain AMED_4631 93a1de74f0b3dfcf4e0c2ee9ca9b6405 245 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 117 3.2E-6 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_4631 93a1de74f0b3dfcf4e0c2ee9ca9b6405 245 SUPERFAMILY SSF55961 7 134 1.97E-15 T 19-04-2016 AMED_2674 3b98c0b5db5bd00832c04ac83ebf9360 145 PANTHER PTHR34297:SF1 17 141 6.2E-34 T 19-04-2016 AMED_2674 3b98c0b5db5bd00832c04ac83ebf9360 145 Pfam PF03780 Asp23 family, cell envelope-related function 22 131 9.1E-30 T 19-04-2016 IPR005531 Alkaline shock protein Asp23 AMED_2674 3b98c0b5db5bd00832c04ac83ebf9360 145 PANTHER PTHR34297 17 141 6.2E-34 T 19-04-2016 AMED_7919 a659a1503a13298c54900359c634bb93 439 SUPERFAMILY SSF158414 90 146 2.75E-5 T 19-04-2016 IPR029013 HP0062-like domain AMED_7919 a659a1503a13298c54900359c634bb93 439 Gene3D G3DSA:1.10.287.850 87 149 3.2E-6 T 19-04-2016 IPR029013 HP0062-like domain AMED_6487 dbfe5d7e9ae929d0af1611a7b034afcc 146 Pfam PF13581 Histidine kinase-like ATPase domain 21 133 1.2E-10 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_6487 dbfe5d7e9ae929d0af1611a7b034afcc 146 SUPERFAMILY SSF55874 42 135 1.29E-6 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_8274 1f75c75e9555e9cbb6ce942e57e66390 245 SUPERFAMILY SSF55729 40 146 1.02E-6 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8274 1f75c75e9555e9cbb6ce942e57e66390 245 Gene3D G3DSA:3.40.630.30 45 189 4.4E-6 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8800 48a67be8185c82f2cc3e00627578b0df 205 SMART SM00943 22 181 0.0028 T 19-04-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal AMED_8800 48a67be8185c82f2cc3e00627578b0df 205 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 25 175 4.1E-10 T 19-04-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal AMED_2161 1a62b9cc7f3c4c44eef899d3671d82d9 173 Gene3D G3DSA:1.10.357.10 39 148 5.6E-4 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_2329 1646a42edd06386d51b240a69f661f86 190 Gene3D G3DSA:3.40.630.30 22 184 7.6E-14 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_2329 1646a42edd06386d51b240a69f661f86 190 SUPERFAMILY SSF55729 25 183 7.57E-13 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_9084 d10473280c6d090db913072f35446d5e 188 Pfam PF12079 Protein of unknown function (DUF3558) 5 182 1.4E-25 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_4832 39af3147ca3287c45f52140234558d72 653 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 7 615 2.6E-148 T 19-04-2016 IPR011749 Conserved hypothetical protein CHP02243 AMED_4832 39af3147ca3287c45f52140234558d72 653 Pfam PF04865 Baseplate J-like protein 400 575 4.5E-11 T 19-04-2016 IPR006949 Baseplate protein J-like AMED_6700 ad6ba08f2a048ee44a9123c86fafdb65 94 Gene3D G3DSA:3.30.70.900 7 68 1.8E-14 T 19-04-2016 AMED_6700 ad6ba08f2a048ee44a9123c86fafdb65 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 8 68 7.2E-14 T 19-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain AMED_6700 ad6ba08f2a048ee44a9123c86fafdb65 94 SUPERFAMILY SSF54909 2 84 4.98E-16 T 19-04-2016 IPR011008 Dimeric alpha-beta barrel AMED_9058 fdbaab0e1bf57ea28430162e893899d7 227 Gene3D G3DSA:3.20.20.370 22 140 5.1E-10 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_9058 fdbaab0e1bf57ea28430162e893899d7 227 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 44 134 4.0E-13 T 19-04-2016 IPR018763 Protein of unknown function DUF2334 AMED_9058 fdbaab0e1bf57ea28430162e893899d7 227 SUPERFAMILY SSF88713 23 136 1.61E-10 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_6185 10324f0047713359827d5924ac05d59d 232 Pfam PF14011 EspG family 13 219 2.3E-29 T 19-04-2016 IPR025734 EspG family AMED_3632 7fea00e7aa6904a765b560dbd10ae8c1 593 SUPERFAMILY SSF52777 40 230 4.34E-15 T 19-04-2016 AMED_3632 7fea00e7aa6904a765b560dbd10ae8c1 593 SUPERFAMILY SSF52777 218 467 7.23E-11 T 19-04-2016 AMED_3632 7fea00e7aa6904a765b560dbd10ae8c1 593 Pfam PF00668 Condensation domain 77 316 4.0E-13 T 19-04-2016 IPR001242 Condensation domain AMED_7335 a25e0aa664111753cdd38489337b7e6e 168 PANTHER PTHR22976:SF22 48 154 9.3E-24 T 19-04-2016 AMED_7335 a25e0aa664111753cdd38489337b7e6e 168 Gene3D G3DSA:3.20.20.70 42 88 3.8E-5 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMED_7335 a25e0aa664111753cdd38489337b7e6e 168 PANTHER PTHR22976 48 154 9.3E-24 T 19-04-2016 AMED_5486 e85dca5fb0f0d7942aca9be19ce10a52 61 SUPERFAMILY SSF55931 6 60 4.02E-7 T 19-04-2016 AMED_4541 b073da0841312688961cf8327b639b31 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 307 3.7E-41 T 19-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AMED_4541 b073da0841312688961cf8327b639b31 332 PANTHER PTHR32196 6 332 6.9E-100 T 19-04-2016 AMED_4541 b073da0841312688961cf8327b639b31 332 PANTHER PTHR32196:SF24 6 332 6.9E-100 T 19-04-2016 AMED_5382 bdc2f093e01e7183ed9aa3bef202ae4e 453 Pfam PF07287 Protein of unknown function (DUF1446) 53 337 1.5E-23 T 19-04-2016 IPR010839 Protein of unknown function DUF1446 AMED_2194 3567591d57ea135cd13eb33d0f473ab7 139 PIRSF PIRSF017385 1 139 4.1E-50 T 19-04-2016 IPR021050 Cytochrome c oxidase subunit IV, actinobacteria GO:0004129|GO:0016021|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMED_2194 3567591d57ea135cd13eb33d0f473ab7 139 Pfam PF12270 Cytochrome c oxidase subunit IV 1 137 1.1E-51 T 19-04-2016 IPR021050 Cytochrome c oxidase subunit IV, actinobacteria GO:0004129|GO:0016021|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMED_3374 95f1d023db0941244a6794c1803825e2 375 Pfam PF13556 PucR C-terminal helix-turn-helix domain 304 360 1.3E-16 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_3374 95f1d023db0941244a6794c1803825e2 375 PANTHER PTHR33744 76 370 2.4E-14 T 19-04-2016 AMED_3488 8e8fbe048df9bef1da391e6673ad451d 229 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 22 225 2.3E-45 T 19-04-2016 IPR015402 Protein of unknown function DUF1980 AMED_9170 51754dc28eb7ef8ca635c7da2a846048 52 Pfam PF04149 Domain of unknown function (DUF397) 2 52 1.9E-18 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_0324 59bda1d8204dc281f8aa3ad0311e85ce 273 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 166 187 1.8E-4 T 19-04-2016 IPR001434 Domain of unknown function DUF11 AMED_7716 96c9abe6b5264c60772f9efb30949ef6 185 Pfam PF09438 Domain of unknown function (DUF2017) 6 183 2.0E-63 T 19-04-2016 IPR018561 Domain of unknown function DUF2017 AMED_5425 75425b46e90d93c1ff461413d9f916b4 127 Pfam PF04486 SchA/CurD like domain 1 119 3.2E-55 T 19-04-2016 IPR007575 SchA/CurD-like domain AMED_1456 d692c893a0368762f0d34249d07d882a 520 Pfam PF03055 Retinal pigment epithelial membrane protein 38 511 3.4E-79 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_1456 d692c893a0368762f0d34249d07d882a 520 PANTHER PTHR10543 204 518 2.4E-80 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_1456 d692c893a0368762f0d34249d07d882a 520 PANTHER PTHR10543 37 185 2.4E-80 T 19-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 AMED_6020 fe1524029931db4f61577a50dbf1c545 143 Pfam PF03995 Peptidase inhibitor family I36 32 117 9.0E-16 T 19-04-2016 AMED_1255 fa992f5a07027c317ba1b6bc884b9563 436 Pfam PF01757 Acyltransferase family 8 336 1.5E-14 T 19-04-2016 IPR002656 Acyltransferase 3 GO:0016747 AMED_7615 6e509e3f45de9528fd6cf8edf5553353 338 PANTHER PTHR33371 1 315 4.0E-90 T 19-04-2016 AMED_7615 6e509e3f45de9528fd6cf8edf5553353 338 PANTHER PTHR33371:SF4 1 315 4.0E-90 T 19-04-2016 AMED_7615 6e509e3f45de9528fd6cf8edf5553353 338 Pfam PF02470 MlaD protein 39 113 1.4E-14 T 19-04-2016 IPR003399 Mce/MlaD AMED_7615 6e509e3f45de9528fd6cf8edf5553353 338 TIGRFAM TIGR00996 Mtu_fam_mce: virulence factor Mce family protein 13 295 1.5E-59 T 19-04-2016 IPR005693 Virulence factor Mce protein AMED_0774 d0b73df3baf934b1f002c874feaf1e6b 64 Pfam PF04149 Domain of unknown function (DUF397) 8 60 1.2E-16 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_0504 55b213d663bc13dfab68e2b53168f043 93 Pfam PF14012 Protein of unknown function (DUF4229) 15 75 3.4E-12 T 19-04-2016 IPR025323 Protein of unknown function DUF4229 AMED_7150 cf78ec42dbd6e3e4b4570529cd9f6316 123 Pfam PF13564 DoxX-like family 7 112 9.2E-33 T 19-04-2016 IPR032808 DoxX family AMED_9082 8da76723c418531c329c35ffc1e626f6 252 Pfam PF14011 EspG family 6 247 1.4E-65 T 19-04-2016 IPR025734 EspG family AMED_2286 047b7a4bc1bb322e68c293d194b00fa3 55 Pfam PF04149 Domain of unknown function (DUF397) 5 55 3.0E-18 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_8613 d0cca64b02652da748e965d2e97c6ef1 300 Pfam PF00583 Acetyltransferase (GNAT) family 217 290 5.1E-6 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMED_8613 d0cca64b02652da748e965d2e97c6ef1 300 SUPERFAMILY SSF55729 41 290 2.48E-15 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8613 d0cca64b02652da748e965d2e97c6ef1 300 Gene3D G3DSA:3.40.630.30 231 290 1.3E-9 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_8613 d0cca64b02652da748e965d2e97c6ef1 300 Gene3D G3DSA:3.40.630.30 41 67 1.3E-9 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMED_1939 f379366263a2030e857345e75df6a922 208 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 174 193 1.8E-5 T 19-04-2016 IPR024726 Ferric iron reductase, C-terminal GO:0051537 AMED_3588 b42fea1e608e2df0bb05ae87cc9893ce 249 Gene3D G3DSA:3.30.750.24 11 114 9.7E-10 T 19-04-2016 IPR002645 STAS domain AMED_3588 b42fea1e608e2df0bb05ae87cc9893ce 249 SUPERFAMILY SSF55874 151 243 3.23E-5 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMED_3588 b42fea1e608e2df0bb05ae87cc9893ce 249 SUPERFAMILY SSF52091 9 113 2.35E-7 T 19-04-2016 IPR002645 STAS domain AMED_8586 86326b9e3b01dae11e3def01e343e760 219 Pfam PF11361 Protein of unknown function (DUF3159) 13 199 9.7E-49 T 19-04-2016 IPR016566 Uncharacterised conserved protein UCP010219 AMED_8567 0b62dc677814c2e83ed5873f7a8a9d21 102 Pfam PF11662 Protein of unknown function (DUF3263) 21 92 9.3E-37 T 19-04-2016 IPR021678 Protein of unknown function DUF3263 AMED_1168 f9cf2459bf0a479cc50e70fd04f717be 276 Pfam PF02104 SURF1 family 22 228 5.1E-25 T 19-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 AMED_6907 5dc8870d08e21f066801857b4ebd028b 267 Gene3D G3DSA:3.40.50.150 42 71 9.0E-7 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6907 5dc8870d08e21f066801857b4ebd028b 267 Gene3D G3DSA:3.40.50.150 105 182 9.0E-7 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6907 5dc8870d08e21f066801857b4ebd028b 267 SUPERFAMILY SSF53335 102 198 9.73E-10 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_6907 5dc8870d08e21f066801857b4ebd028b 267 SUPERFAMILY SSF53335 39 70 9.73E-10 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_8650 fe0c35c500214473cc8bb3fae54623bd 441 Pfam PF09852 Predicted membrane protein (DUF2079) 38 425 5.7E-66 T 19-04-2016 IPR018650 Sulfolobus virus STSV1, Orf64 AMED_6872 822aa02a9887fdf2bf87503b84333357 307 Pfam PF08012 Protein of unknown function (DUF1702) 2 298 3.0E-123 T 19-04-2016 IPR012964 Protein of unknown function DUF1702 AMED_8008 a0f23dd325dd7a47eab338ec60e40ec2 219 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 183 215 1.3E-5 T 19-04-2016 IPR019931 LPXTG cell wall anchor domain AMED_2775 9d7cc5e360a38b19dc1870b6d8a9ae53 147 Pfam PF10756 Bacterial PH domain 71 138 4.5E-21 T 19-04-2016 IPR019692 Protein of unknown function DUF2581 AMED_5181 81b44d4bc6a1f493b7d5f752ed156128 233 Gene3D G3DSA:3.40.50.1000 89 217 1.0E-8 T 19-04-2016 IPR023214 HAD-like domain AMED_5181 81b44d4bc6a1f493b7d5f752ed156128 233 Gene3D G3DSA:3.40.50.1000 6 22 1.0E-8 T 19-04-2016 IPR023214 HAD-like domain AMED_5181 81b44d4bc6a1f493b7d5f752ed156128 233 SUPERFAMILY SSF56784 7 217 5.29E-15 T 19-04-2016 IPR023214 HAD-like domain AMED_9331 a3532aa21b722c66da3518a0566200ad 386 PANTHER PTHR41519:SF1 4 384 5.7E-33 T 19-04-2016 AMED_9331 a3532aa21b722c66da3518a0566200ad 386 Pfam PF13449 Esterase-like activity of phytase 51 368 7.6E-78 T 19-04-2016 IPR027372 Phytase-like domain AMED_9331 a3532aa21b722c66da3518a0566200ad 386 PANTHER PTHR41519 4 384 5.7E-33 T 19-04-2016 AMED_2649 ae76c65220b7c0cb4062255485ed86fd 305 TIGRFAM TIGR04222 near_uncomplex: TIGR04222 domain 15 238 3.2E-47 T 19-04-2016 IPR026467 Ser/Gly rich, Cys interspersed, C-terminal domain AMED_5706 ec024dcb019dfc653c6f9ed115aa7f90 309 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 299 1.6E-40 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_5706 ec024dcb019dfc653c6f9ed115aa7f90 309 SUPERFAMILY SSF53213 2 193 1.57E-58 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_5706 ec024dcb019dfc653c6f9ed115aa7f90 309 SUPERFAMILY SSF53213 229 302 1.57E-58 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_5706 ec024dcb019dfc653c6f9ed115aa7f90 309 Gene3D G3DSA:3.40.830.10 1 193 1.2E-74 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_5706 ec024dcb019dfc653c6f9ed115aa7f90 309 Gene3D G3DSA:3.40.830.10 231 302 1.2E-74 T 19-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMED_8003 d667e5dffb7eb9b48fde5e8842b41a91 141 Pfam PF11208 Protein of unknown function (DUF2992) 5 141 2.9E-36 T 19-04-2016 IPR016787 Uncharacterised conserved protein UCP021328 AMED_0935 5ac99c3ed14e48c09b0be86ed01a3ad9 98 Pfam PF07179 SseB protein N-terminal domain 25 88 2.5E-4 T 19-04-2016 IPR009839 SseB protein N-terminal domain AMED_0268 d60b9e75b9f439356e1015c50f26912c 137 Gene3D G3DSA:3.40.50.150 5 85 1.2E-8 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_0268 d60b9e75b9f439356e1015c50f26912c 137 SUPERFAMILY SSF53335 2 111 7.47E-14 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_7239 da239aad83c2bfd4a4185e35106b6dd7 421 Pfam PF07690 Major Facilitator Superfamily 29 369 8.9E-53 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMED_7239 da239aad83c2bfd4a4185e35106b6dd7 421 Gene3D G3DSA:1.20.1250.20 21 199 2.7E-36 T 19-04-2016 AMED_7239 da239aad83c2bfd4a4185e35106b6dd7 421 PANTHER PTHR11662 23 402 1.5E-64 T 19-04-2016 AMED_7239 da239aad83c2bfd4a4185e35106b6dd7 421 SUPERFAMILY SSF103473 13 406 6.67E-75 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMED_7239 da239aad83c2bfd4a4185e35106b6dd7 421 Gene3D G3DSA:1.20.1250.20 215 402 4.6E-23 T 19-04-2016 AMED_2604 8b44908f5dc9a5784f36f160d81df9e8 227 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 88 172 8.3E-12 T 19-04-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain AMED_7097 fc2f79e43f11f77f66df3a134583fcf4 268 SUPERFAMILY SSF52540 6 223 7.36E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_7097 fc2f79e43f11f77f66df3a134583fcf4 268 Gene3D G3DSA:3.40.50.300 6 214 2.5E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4836 d201d5146f0d6b930297e7d9fb4f953d 253 Gene3D G3DSA:3.10.350.10 199 246 4.6E-4 T 19-04-2016 IPR018392 LysM domain AMED_4836 d201d5146f0d6b930297e7d9fb4f953d 253 Pfam PF01476 LysM domain 200 246 4.7E-5 T 19-04-2016 IPR018392 LysM domain AMED_4081 b047ecda8bd6c7a541043b07979fb1b4 312 Pfam PF03631 Virulence factor BrkB 45 291 5.6E-16 T 19-04-2016 IPR017039 Virulence factor BrkB AMED_8242 47498421b559c1c87df93bcb42a9e627 118 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 45 81 1.2E-12 T 19-04-2016 IPR019933 DivIVA domain AMED_8242 47498421b559c1c87df93bcb42a9e627 118 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 39 5.2E-9 T 19-04-2016 IPR019933 DivIVA domain AMED_3637 3aa021ff2322862a494e4a6b8aceee0d 320 Gene3D G3DSA:1.25.40.10 41 301 2.1E-7 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMED_4282 289f59b3aca3c1376261755deb1fbd62 331 PANTHER PTHR11101 7 330 3.0E-80 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_4282 289f59b3aca3c1376261755deb1fbd62 331 Pfam PF01384 Phosphate transporter family 153 320 1.0E-43 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_4282 289f59b3aca3c1376261755deb1fbd62 331 Pfam PF01384 Phosphate transporter family 21 167 7.7E-39 T 19-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 AMED_3084 b2248b030fb76fa2a25d388b7002d341 426 PANTHER PTHR33171:SF3 6 361 2.0E-70 T 19-04-2016 AMED_3084 b2248b030fb76fa2a25d388b7002d341 426 Pfam PF09861 Domain of unknown function (DUF2088) 10 211 7.1E-50 T 19-04-2016 IPR018657 Domain of unknown function DUF2088 AMED_3084 b2248b030fb76fa2a25d388b7002d341 426 PANTHER PTHR33171 6 361 2.0E-70 T 19-04-2016 AMED_3959 4a571ef654788abb92f532acc804b453 226 SUPERFAMILY SSF53448 5 197 8.56E-16 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_3959 4a571ef654788abb92f532acc804b453 226 Gene3D G3DSA:3.90.550.10 4 195 9.4E-13 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMED_3216 b908dc155d05acf2faa9f126a494ecba 139 Pfam PF06803 Protein of unknown function (DUF1232) 67 100 2.3E-12 T 19-04-2016 IPR010652 Protein of unknown function DUF1232 UniPathway: UPA00143 AMED_3356 486bd4dec69b4162350ada588ff9db6d 211 Pfam PF06197 Protein of unknown function (DUF998) 16 200 2.5E-19 T 19-04-2016 IPR009339 Protein of unknown function DUF998 AMED_8525 b7b2a9dfd8a517a93986d9cee0844685 745 Pfam PF13625 Helicase conserved C-terminal domain 462 584 1.1E-41 T 19-04-2016 IPR032830 Helicase XPB/Ssl2, N-terminal domain AMED_0245 aaef01dae443aaac117c430c635d8f40 308 PANTHER PTHR30168 2 307 4.2E-91 T 19-04-2016 AMED_0245 aaef01dae443aaac117c430c635d8f40 308 Pfam PF04228 Putative neutral zinc metallopeptidase 11 302 2.9E-76 T 19-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMED_7606 a3a43cf4f7c8801d73c3a0386d7a25fb 397 Pfam PF13556 PucR C-terminal helix-turn-helix domain 336 394 5.2E-14 T 19-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain AMED_7606 a3a43cf4f7c8801d73c3a0386d7a25fb 397 PANTHER PTHR33744 249 394 9.3E-16 T 19-04-2016 AMED_2632 7a4d89c150e22920e14a8a44b5a6e3d7 209 Pfam PF06197 Protein of unknown function (DUF998) 56 197 2.6E-7 T 19-04-2016 IPR009339 Protein of unknown function DUF998 AMED_2952 a62a6e255275ef5d120bcbf0e0afe0ca 244 PANTHER PTHR33973 6 233 1.3E-49 T 19-04-2016 AMED_2952 a62a6e255275ef5d120bcbf0e0afe0ca 244 Pfam PF07103 Protein of unknown function (DUF1365) 6 233 6.1E-58 T 19-04-2016 IPR010775 Protein of unknown function DUF1365 AMED_5336 c539953ccf7076b2f1f91f34cd4a332b 539 Pfam PF05787 Bacterial protein of unknown function (DUF839) 249 433 5.5E-5 T 19-04-2016 IPR008557 Protein of unknown function DUF839 AMED_3934 d33a4d6b2b0ad9a7f3da91757a399d81 375 SUPERFAMILY SSF88713 135 356 5.4E-18 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_3934 d33a4d6b2b0ad9a7f3da91757a399d81 375 SUPERFAMILY SSF88713 55 104 5.4E-18 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMED_3934 d33a4d6b2b0ad9a7f3da91757a399d81 375 Gene3D G3DSA:3.20.20.370 133 360 1.6E-7 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3934 d33a4d6b2b0ad9a7f3da91757a399d81 375 Gene3D G3DSA:3.20.20.370 64 101 1.6E-7 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMED_3025 77da5c77a5c07b42f475188003e509dc 130 Pfam PF17032 zinc-ribbon family 19 77 1.9E-7 T 19-04-2016 IPR031493 Zinc-ribbon 15 AMED_3928 688d6fe900a61e49b0a06f44e9ab3746 196 Pfam PF10517 Electron transfer DM13 87 191 4.2E-28 T 19-04-2016 IPR019545 DM13 domain AMED_5683 c8884ac72021db04c6ffdaec00356a56 78 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 2 47 2.8E-14 T 19-04-2016 IPR025161 Putative transposase IS4/IS5 family AMED_6362 0738ea92ad8d629098fa1557a6b7ee08 406 Gene3D G3DSA:3.40.50.1820 17 128 8.0E-4 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMED_6362 0738ea92ad8d629098fa1557a6b7ee08 406 SUPERFAMILY SSF53756 178 322 1.54E-6 T 19-04-2016 AMED_7945 4f86f356f4c63f366049d9ace85d38b8 293 Pfam PF12679 ABC-2 family transporter protein 3 291 3.0E-9 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_1077 5fa5fe67dc84c6a6d899cc0b1744fc1c 130 Pfam PF13828 Domain of unknown function (DUF4190) 54 113 4.7E-14 T 19-04-2016 IPR025241 Domain of unknown function DUF4190 AMED_2655 c2aad91d6fe27af1088620251272d58a 338 PANTHER PTHR10459:SF36 50 336 8.5E-114 T 19-04-2016 AMED_2655 c2aad91d6fe27af1088620251272d58a 338 PANTHER PTHR10459 50 336 8.5E-114 T 19-04-2016 AMED_8098 3dff1f3a7b9fb3041d47527a50448741 1182 SUPERFAMILY SSF140453 102 168 5.1E-5 T 19-04-2016 IPR010310 Type VII secretion system ESAT-6-like AMED_8783 3352816c6b82e0f719291d7d56dfe4ab 510 Pfam PF12307 Protein of unknown function (DUF3631) 251 435 1.3E-65 T 19-04-2016 IPR022081 Domain of unknown function DUF3631 AMED_5626 2f8dec5e65526f3cfc60df6e0969f2a7 111 SUPERFAMILY SSF53335 1 104 1.25E-9 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMED_1575 ed5c3cb6f775432bfb76e121543d5ec8 85 Pfam PF03779 SPW repeat 28 72 2.8E-9 T 19-04-2016 IPR005530 SPW repeat AMED_8091 4cf0b7b20add0ab819044f9ae569bd24 151 Pfam PF14155 Domain of unknown function (DUF4307) 30 140 5.3E-31 T 19-04-2016 IPR025443 Protein of unknown function DUF4307 AMED_1450 004a3c1d3f8910b72bc6d050df2fed74 316 Gene3D G3DSA:2.50.20.10 218 270 8.6E-4 T 19-04-2016 AMED_2292 3615073ab6f7a9799210e1b27baff407 175 Pfam PF09534 Tryptophan-associated transmembrane protein (Trp_oprn_chp) 3 167 5.5E-28 T 19-04-2016 IPR019051 Trp biosynthesis associated, transmembrane protein, Oprn/Chp AMED_0824 b108a7f049e4789d7a37ee48a37552b9 52 Pfam PF08940 Domain of unknown function (DUF1918) 1 47 5.2E-24 T 19-04-2016 IPR015035 Domain of unknown function DUF1918 AMED_0824 b108a7f049e4789d7a37ee48a37552b9 52 SUPERFAMILY SSF50118 1 50 1.5E-19 T 19-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AMED_1590 404043d09ded8c67172e38a84b5ca830 231 SUPERFAMILY SSF55073 10 136 5.02E-5 T 19-04-2016 IPR029787 Nucleotide cyclase AMED_8634 4c744b52b8f0b660060fe3aa1f8d3a4a 69 Pfam PF05800 Gas vesicle synthesis protein GvpO 3 68 5.6E-21 T 19-04-2016 IPR008634 Gas vesicle protein GvpO GO:0031412 AMED_2489 fcc8339522fe7ec18913acdb549b8a4f 530 PANTHER PTHR11819:SF13 14 525 8.2E-213 T 19-04-2016 AMED_2489 fcc8339522fe7ec18913acdb549b8a4f 530 Pfam PF00474 Sodium:solute symporter family 45 454 6.4E-89 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_2489 fcc8339522fe7ec18913acdb549b8a4f 530 PANTHER PTHR11819 14 525 8.2E-213 T 19-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AMED_4262 56e4e40ac8a335f7b5a4a9aeeb216904 62 Pfam PF11387 Protein of unknown function (DUF2795) 13 56 1.6E-17 T 19-04-2016 IPR021527 Protein of unknown function DUF2795 AMED_1230 acbf8fdf616a5a3e50ab1f0eaeef67d3 129 Pfam PF06271 RDD family 10 104 1.6E-5 T 19-04-2016 IPR010432 RDD AMED_7847 7f1463b23c219160dece0531bf379b17 234 Pfam PF06439 Domain of Unknown Function (DUF1080) 39 220 4.3E-21 T 19-04-2016 IPR010496 Domain of unknown function DUF1080 AMED_5940 ef350efa3ef4f1770a35269796414dd7 183 Pfam PF01794 Ferric reductase like transmembrane component 12 134 2.7E-9 T 19-04-2016 IPR013130 Ferric reductase transmembrane component-like domain AMED_0183 d0cd5449c3debdb91d0b40c662ccaeb6 213 Pfam PF14016 Protein of unknown function (DUF4232) 76 210 2.1E-32 T 19-04-2016 IPR025326 Protein of unknown function DUF4232 AMED_6111 59fc635df3437a2fc793bbac915816d5 308 Pfam PF12679 ABC-2 family transporter protein 54 306 5.0E-10 T 19-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 AMED_9041 2f218b04ecf72d2bbdfd54aab098c364 234 Pfam PF07179 SseB protein N-terminal domain 125 225 6.6E-4 T 19-04-2016 IPR009839 SseB protein N-terminal domain AMED_7813 edb046c2b9afd08337d9c2f1d5647f7c 539 Pfam PF05787 Bacterial protein of unknown function (DUF839) 249 433 4.7E-5 T 19-04-2016 IPR008557 Protein of unknown function DUF839 AMED_1677 4b542b4f6b52a6ee99493b741044c918 306 Pfam PF14100 Methane oxygenase PmoA 15 299 2.3E-79 T 19-04-2016 IPR029475 Methane oxygenase PmoA AMED_5543 c497aba40bad7699d85c2267750f2dfc 253 Pfam PF10067 Predicted membrane protein (DUF2306) 76 222 6.2E-25 T 19-04-2016 IPR018750 Protein of unknown function DUF2306, membrane AMED_2702 e051c9868bf1594ebcafb793b8a07379 309 Pfam PF04087 Domain of unknown function (DUF389) 139 283 4.0E-26 T 19-04-2016 IPR005240 Protein of unknown function DUF389 AMED_2702 e051c9868bf1594ebcafb793b8a07379 309 PANTHER PTHR20992 1 293 4.7E-34 T 19-04-2016 AMED_6834 5ef89897b1f20af4ba014b000524edb5 127 Pfam PF03995 Peptidase inhibitor family I36 37 103 1.5E-10 T 19-04-2016 AMED_4490 2b1bc8106a3b826ff17cd5c90fc15442 233 Pfam PF06197 Protein of unknown function (DUF998) 25 212 2.6E-19 T 19-04-2016 IPR009339 Protein of unknown function DUF998 AMED_8273 355f3a4bb28d169e0307086972feafbc 239 Pfam PF10979 Protein of unknown function (DUF2786) 8 46 1.4E-15 T 19-04-2016 IPR024498 Domain of unknown function DUF2786 AMED_8273 355f3a4bb28d169e0307086972feafbc 239 ProDom PD120223 SCO3432 GENE ML2604 GP79 GP77 CGL2230 MB0190 3 232 2.0E-29 T 19-04-2016 AMED_3137 5ca1a8636a43e8c161592a343fd2fcc2 504 SUPERFAMILY SSF52540 46 94 7.99E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_3137 5ca1a8636a43e8c161592a343fd2fcc2 504 SUPERFAMILY SSF52540 209 395 7.99E-9 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4475 e95d603335087bcf7e39930e88e873a7 409 Pfam PF09594 Protein of unknown function (DUF2029) 71 302 1.3E-55 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_8919 2f09db62ab6c3b6fe8685b3d8d0da50f 554 Pfam PF03752 Short repeats of unknown function 456 496 3.3E-15 T 19-04-2016 IPR005506 Protein of unknown function DUF312 AMED_8919 2f09db62ab6c3b6fe8685b3d8d0da50f 554 Pfam PF03752 Short repeats of unknown function 362 402 2.9E-10 T 19-04-2016 IPR005506 Protein of unknown function DUF312 AMED_8919 2f09db62ab6c3b6fe8685b3d8d0da50f 554 Pfam PF03752 Short repeats of unknown function 167 208 1.6E-13 T 19-04-2016 IPR005506 Protein of unknown function DUF312 AMED_8919 2f09db62ab6c3b6fe8685b3d8d0da50f 554 Pfam PF03752 Short repeats of unknown function 75 115 1.6E-12 T 19-04-2016 IPR005506 Protein of unknown function DUF312 AMED_8919 2f09db62ab6c3b6fe8685b3d8d0da50f 554 Pfam PF03752 Short repeats of unknown function 214 248 4.2E-9 T 19-04-2016 IPR005506 Protein of unknown function DUF312 AMED_8919 2f09db62ab6c3b6fe8685b3d8d0da50f 554 Pfam PF03752 Short repeats of unknown function 121 158 1.4E-10 T 19-04-2016 IPR005506 Protein of unknown function DUF312 AMED_0645 7f3adcf6ff2ee1ec258d523da11d204f 473 Pfam PF03559 NDP-hexose 2,3-dehydratase 267 469 1.9E-70 T 19-04-2016 IPR005212 NDP-hexose 2,3-dehydratase AMED_0645 7f3adcf6ff2ee1ec258d523da11d204f 473 Pfam PF03559 NDP-hexose 2,3-dehydratase 28 230 3.2E-86 T 19-04-2016 IPR005212 NDP-hexose 2,3-dehydratase AMED_8677 bf24added43427040a28a36b8122748b 229 SUPERFAMILY SSF110087 186 225 8.24E-6 T 19-04-2016 IPR007410 DR1885-like metal-binding protein AMED_1135 a47e1124b89094d3217514fe2bc9616b 122 PANTHER PTHR36974 10 118 5.2E-26 T 19-04-2016 AMED_8656 cd052462cf3797d236c1a7e611fb326f 1046 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 17 65 1.6E-6 T 19-04-2016 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 AMED_0234 45791e6a3882b26432b2feedb05d211e 254 Pfam PF14011 EspG family 8 246 2.7E-58 T 19-04-2016 IPR025734 EspG family AMED_8368 8d7e81a3ee421667a972552a4321bd41 207 Pfam PF10067 Predicted membrane protein (DUF2306) 43 195 4.3E-31 T 19-04-2016 IPR018750 Protein of unknown function DUF2306, membrane AMED_2738 478048bebc134947e5cb6f2e7382238a 493 SUPERFAMILY SSF75005 129 237 1.57E-18 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_2738 478048bebc134947e5cb6f2e7382238a 493 Gene3D G3DSA:2.115.10.20 131 238 2.1E-13 T 19-04-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AMED_7517 8ec5f03ac03889596e7f3a868a6b68dd 79 Gene3D G3DSA:1.10.1660.10 3 73 7.7E-5 T 19-04-2016 AMED_8392 e0bada524582a7453f0819e89fd90ce5 111 Gene3D G3DSA:1.10.260.40 56 94 6.3E-4 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMED_6150 e2ebfc8f8b5e1716ec1ee8cfd739db79 449 Pfam PF12307 Protein of unknown function (DUF3631) 260 444 1.2E-68 T 19-04-2016 IPR022081 Domain of unknown function DUF3631 AMED_0423 c3c6d86a1df32554a8708ae06aa9cd1e 105 Pfam PF13453 Transcription factor zinc-finger 1 30 7.0E-12 T 19-04-2016 IPR027392 Transcription factor zinc-finger AMED_8740 4e96795965d76fb4c565ab26a2b9d4b8 367 Pfam PF13367 Protease prsW family 58 254 3.9E-53 T 19-04-2016 IPR026898 Protease PrsW GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMED_8740 4e96795965d76fb4c565ab26a2b9d4b8 367 PANTHER PTHR36844 5 319 2.5E-29 T 19-04-2016 AMED_5236 c8127dae66e3ef4ab16feab1bd5bc2d5 114 Pfam PF10824 Excreted virulence factor EspC, type VII ESX diderm 6 95 5.8E-10 T 19-04-2016 IPR022536 ESX-1 secretion-associated protein EspC AMED_3331 c94b0cc95114a3c2876b3c370e3778c8 250 PANTHER PTHR11040:SF33 5 246 2.3E-28 T 19-04-2016 AMED_3331 c94b0cc95114a3c2876b3c370e3778c8 250 PANTHER PTHR11040 5 246 2.3E-28 T 19-04-2016 AMED_4846 b601c92de3b6360a80bc54cd7c5f101f 219 Pfam PF14065 Protein of unknown function (DUF4255) 4 179 9.7E-45 T 19-04-2016 IPR025351 Protein of unknown function DUF4255 AMED_0362 0a1433ba2bb940b35385085759398bb4 148 SUPERFAMILY SSF140990 16 147 2.22E-7 T 19-04-2016 AMED_7042 4f8bdebe45fbc3ef5a4f881f9689df7b 69 Pfam PF09489 Probable cobalt transporter subunit (CbtB) 21 69 2.6E-13 T 19-04-2016 IPR012667 Cobalt transporter subunit CbtB, putative AMED_8749 4fcac8c6c21401121970160886b37fee 272 Pfam PF14011 EspG family 7 261 1.1E-59 T 19-04-2016 IPR025734 EspG family AMED_0433 20ff19c453fb10207e0f04814aadac80 187 Pfam PF03596 Cadmium resistance transporter 14 184 6.4E-21 T 19-04-2016 IPR004676 Cadmium resistance transporter AMED_5587 ee770c40a0a5dce808048fbf6738a967 58 Gene3D G3DSA:3.40.50.720 16 56 1.4E-5 T 19-04-2016 IPR016040 NAD(P)-binding domain AMED_9269 59d7a8ab655c03c07fd1564838fc371e 749 Pfam PF02687 FtsX-like permease family 195 310 3.0E-7 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_9269 59d7a8ab655c03c07fd1564838fc371e 749 Pfam PF02687 FtsX-like permease family 632 734 5.8E-6 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMED_6021 09d24f5633162c6ad605ee52cef3da42 316 Pfam PF11382 Copper transport outer membrane protein, MctB 2 308 1.0E-97 T 19-04-2016 IPR021522 Copper transporter MctB GO:0006810 AMED_6114 99d3c8d933a1d0e122739cb653095567 167 SUPERFAMILY SSF55961 8 163 4.69E-20 T 19-04-2016 AMED_6114 99d3c8d933a1d0e122739cb653095567 167 Gene3D G3DSA:3.30.530.20 7 162 3.2E-12 T 19-04-2016 IPR023393 START-like domain AMED_6114 99d3c8d933a1d0e122739cb653095567 167 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 9 160 4.5E-12 T 19-04-2016 IPR019587 Polyketide cyclase/dehydrase AMED_5427 ac9046cec8a2f3f213d04ea1fecb4977 145 Pfam PF08592 Domain of unknown function (DUF1772) 18 140 2.2E-13 T 19-04-2016 IPR013901 Protein of unknown function DUF1772 AMED_5258 2fdf1ee231891d552937f420ad02db5c 87 Pfam PF11239 Protein of unknown function (DUF3040) 1 79 3.0E-16 T 19-04-2016 IPR021401 Protein of unknown function DUF3040 AMED_0769 f378a05d12bed0a306010e3b8a40f1fd 312 Pfam PF16751 Anti-sigma-D factor RsdA to sigma factor binding region 28 73 4.4E-13 T 19-04-2016 IPR031928 Anti-sigma-D factor RsdA, sigma factor binding region AMED_0345 e902f75fec304c638c061d946e761f16 420 Pfam PF01590 GAF domain 111 217 5.1E-6 T 19-04-2016 IPR003018 GAF domain GO:0005515 AMED_2539 05e9d4304aef0482fad05818512a817c 263 Pfam PF13628 Domain of unknown function (DUF4142) 54 187 1.9E-13 T 19-04-2016 IPR025419 Domain of unknown function DUF4142 AMED_6383 d06078d9d98c88aae4280da7fc871265 202 Pfam PF13358 DDE superfamily endonuclease 14 164 1.9E-26 T 19-04-2016 AMED_7420 c9865d5b01d38cca054c72e4ed6ac93b 908 PANTHER PTHR40081 1 907 1.3E-213 T 19-04-2016 AMED_8442 7303fe072b5d607b3af42cb99a9a9f26 560 PANTHER PTHR30569 23 500 1.1E-61 T 19-04-2016 IPR030191 Cytosine permease GO:0015209|GO:0016021 AMED_6265 200a3ca22d9cf658b4407899b19d986f 123 Pfam PF12079 Protein of unknown function (DUF3558) 1 120 7.7E-14 T 19-04-2016 IPR024520 Protein of unknown function DUF3558 AMED_5239 46d9020e29243e1e9d706067accdcf9d 280 Pfam PF14011 EspG family 13 274 7.2E-39 T 19-04-2016 IPR025734 EspG family AMED_8319 9753cdd015641932cae1aa86e62ac88d 224 Pfam PF01609 Transposase DDE domain 33 200 2.0E-7 T 19-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMED_3427 a03fba67cffb859c7b5231928f4b677a 328 Pfam PF06626 Protein of unknown function (DUF1152) 110 290 4.6E-13 T 19-04-2016 IPR010581 Protein of unknown function DUF1152 AMED_6436 35e7bf95f29be21ff05262d3380ebc08 113 Gene3D G3DSA:1.10.357.10 4 97 1.9E-4 T 19-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 AMED_7107 1cf9f2ab29b3af0aa86d6b5927bc3aa3 63 Pfam PF04149 Domain of unknown function (DUF397) 9 61 1.4E-22 T 19-04-2016 IPR007278 Domain of unknown function DUF397 AMED_8298 2751288b83506cff9f078c5315edb9f6 119 Gene3D G3DSA:1.10.10.60 22 52 1.1E-4 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMED_5141 be7e39b1cac496d176ad8e833ea2c6b0 64 Pfam PF14013 MT0933-like antitoxin protein 4 51 1.2E-17 T 19-04-2016 IPR028037 Antitoxin Rv0909/MT0933 AMED_2605 ffc87e1c56b850ff1f683b3f8dfc370e 102 Pfam PF13834 Domain of unknown function (DUF4193) 1 102 4.2E-42 T 19-04-2016 IPR025242 Protein of unknown function DUF4193 AMED_0037 f5ff839e9aba42402148c4de5daaa986 123 Pfam PF10756 Bacterial PH domain 48 122 4.2E-9 T 19-04-2016 IPR019692 Protein of unknown function DUF2581 AMED_5237 1539a5068ff917af1c20ebdd48b09e90 687 SUPERFAMILY SSF140459 111 282 1.6E-6 T 19-04-2016 AMED_6198 b52dcec6eee06bc1261bb57f18a5e8fa 139 Pfam PF12770 CHAT domain 4 122 2.4E-17 T 19-04-2016 IPR024983 CHAT domain AMED_2074 cece2ba1857dbdff41ff94a54cc25977 411 Pfam PF09594 Protein of unknown function (DUF2029) 65 296 4.6E-46 T 19-04-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 AMED_3576 a750b292c217eba52c6d8ef0d848c26f 230 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 149 229 1.0E-20 T 19-04-2016 AMED_3576 a750b292c217eba52c6d8ef0d848c26f 230 SUPERFAMILY SSF55166 76 228 6.28E-25 T 19-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain AMED_5220 c4b4ae24bd99a8b0fed9e9b06a425aae 101 Pfam PF12277 Protein of unknown function (DUF3618) 7 48 1.9E-9 T 19-04-2016 IPR022062 Protein of unknown function DUF3618 AMED_0264 05f746b5679f5d9e2bb820c48977605f 134 Pfam PF04686 Streptomyces sporulation and cell division protein, SsgA 21 118 1.9E-31 T 19-04-2016 IPR006776 Sporulation-specific cell division protein SsgB GO:0051301 AMED_2566 dd1954e5862ad4ac640fc4bea3b30ae9 223 ProDom PD068376 ORF2 SECRETED GLNII PRECURSOR SIGNAL 48 223 6.0E-37 T 19-04-2016 AMED_2923 9154fcfba4bbbdb01459a1875a25d45c 1097 Gene3D G3DSA:1.25.10.10 123 218 2.5E-4 T 19-04-2016 IPR011989 Armadillo-like helical AMED_2923 9154fcfba4bbbdb01459a1875a25d45c 1097 Gene3D G3DSA:1.25.10.10 406 499 2.5E-4 T 19-04-2016 IPR011989 Armadillo-like helical AMED_2923 9154fcfba4bbbdb01459a1875a25d45c 1097 Gene3D G3DSA:1.25.10.10 732 818 2.5E-4 T 19-04-2016 IPR011989 Armadillo-like helical AMED_7610 0756ac8c6d0640d3090c6f9b5b18591d 165 PANTHER PTHR37042 1 160 1.1E-15 T 19-04-2016 AMED_1140 ecede5e1a63118ac5ce8b1ec3cfdd9e7 213 Pfam PF13559 Domain of unknown function (DUF4129) 130 200 7.0E-14 T 19-04-2016 IPR025403 Domain of unknown function DUF4129 AMED_1713 0f7b8d50fe3e5d389c41392369524142 583 SUPERFAMILY SSF52540 129 535 3.66E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMED_4828 5441369e77af587e3a9086bc9c88b5e5 444 Gene3D G3DSA:2.60.40.360 16 94 7.4E-5 T 19-04-2016 IPR008962 PapD-like AMED_1149 ab4e0c9e8a05e8f3aaaaab109efffc99 522 Pfam PF09972 Predicted membrane protein (DUF2207) 27 459 9.9E-24 T 19-04-2016 IPR018702 Protein of unknown function DUF2207, membrane AMED_0168 f6c11e50784e5a627096369333facfe1 160 Pfam PF05901 Excalibur calcium-binding domain 39 73 5.8E-6 T 19-04-2016 IPR008613 Excalibur calcium-binding domain AMED_8199 6f94d7e17aa266877a4b6904e4319154 120 Pfam PF04977 Septum formation initiator 11 85 6.3E-18 T 19-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 AMED_4476 9cee359cb62ea860587f9827125e21bc 127 Pfam PF14325 Domain of unknown function (DUF4383) 4 116 1.4E-14 T 19-04-2016 IPR025492 Protein of unknown function DUF4383 AMED_6688 f95ce08b18de1322381e5445c51f9508 168 Pfam PF14015 Protein of unknown function (DUF4231) 33 126 3.0E-12 T 19-04-2016 IPR025325 Protein of unknown function DUF4231 AMED_5119 c335907d37e7132778640cd3f73232eb 70 Pfam PF11387 Protein of unknown function (DUF2795) 13 57 1.3E-8 T 19-04-2016 IPR021527 Protein of unknown function DUF2795 AMED_5924 be0f97008dd4a181ac120bd8ed55ecdc 236 Pfam PF10014 2OG-Fe dioxygenase 101 226 7.8E-11 T 19-04-2016 IPR018724 2OG-Fe dioxygenase AMED_3638 53215056f8dfd1c8598be80b27efa8e7 389 SUPERFAMILY SSF52540 114 201 4.25E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase