locus-tag class description LCQ53_RS00020 PF01966 HD domain LCQ53_RS00025 PF01467 Cytidylyltransferase-like LCQ53_RS00030 PF01985 CRS1 / YhbY (CRM) domain LCQ53_RS00035 PF09269 Domain of unknown function (DUF1967) LCQ53_RS00035 PF01018 GTP1/OBG LCQ53_RS00035 PF01926 50S ribosome-binding GTPase LCQ53_RS00040 PF01016 Ribosomal L27 protein LCQ53_RS00050 PF00829 Ribosomal prokaryotic L21 protein LCQ53_RS00055 PF10150 Ribonuclease E/G family LCQ53_RS00055 PF00575 S1 RNA binding domain LCQ53_RS00060 PF12241 Trans-2-enoyl-CoA reductase catalytic region LCQ53_RS00060 PF07055 Enoyl reductase FAD binding domain LCQ53_RS00060 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LCQ53_RS00065 PF00672 HAMP domain LCQ53_RS00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS00065 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS00065 PF01627 Hpt domain LCQ53_RS00065 PF00072 Response regulator receiver domain LCQ53_RS00065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS00085 PF01627 Hpt domain LCQ53_RS00085 PF00072 Response regulator receiver domain LCQ53_RS00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS00085 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS00105 PF17863 AAA lid domain LCQ53_RS00105 PF07726 ATPase family associated with various cellular activities (AAA) LCQ53_RS00110 PF03553 Na+/H+ antiporter family LCQ53_RS00115 PF00694 Aconitase C-terminal domain LCQ53_RS00115 PF00330 Aconitase family (aconitate hydratase) LCQ53_RS00125 PF02581 Thiamine monophosphate synthase LCQ53_RS00125 PF08543 Phosphomethylpyrimidine kinase LCQ53_RS00130 PF02581 Thiamine monophosphate synthase LCQ53_RS00135 PF02110 Hydroxyethylthiazole kinase family LCQ53_RS00140 PF00082 Subtilase family LCQ53_RS00170 PF00005 ABC transporter LCQ53_RS00175 PF13426 PAS domain LCQ53_RS00175 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS00175 PF00672 HAMP domain LCQ53_RS00215 PF03466 LysR substrate binding domain LCQ53_RS00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS00220 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS00225 PF00248 Aldo/keto reductase family LCQ53_RS00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS00240 PF03466 LysR substrate binding domain LCQ53_RS00255 PF06445 GyrI-like small molecule binding domain LCQ53_RS00255 PF12833 Helix-turn-helix domain LCQ53_RS00265 PF00005 ABC transporter LCQ53_RS00265 PF17755 UvrA DNA-binding domain LCQ53_RS00265 PF17760 UvrA interaction domain LCQ53_RS00325 PF09334 tRNA synthetases class I (M) LCQ53_RS00325 PF13603 Leucyl-tRNA synthetase, Domain 2 LCQ53_RS00325 PF00133 tRNA synthetases class I (I, L, M and V) LCQ53_RS00325 PF08264 Anticodon-binding domain of tRNA LCQ53_RS00330 PF03734 L,D-transpeptidase catalytic domain LCQ53_RS00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LCQ53_RS00340 PF02127 Aminopeptidase I zinc metalloprotease (M18) LCQ53_RS00345 PF03960 ArsC family LCQ53_RS00350 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_RS00350 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_RS00355 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS00355 PF17152 Periplasmic sensor domain LCQ53_RS00360 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS00360 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS00360 PF00563 EAL domain LCQ53_RS00365 PF06962 Putative rRNA methylase LCQ53_RS00375 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LCQ53_RS00375 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LCQ53_RS00380 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LCQ53_RS00380 PF00056 lactate/malate dehydrogenase, NAD binding domain LCQ53_RS00395 PF00704 Glycosyl hydrolases family 18 LCQ53_RS00395 PF01476 LysM domain LCQ53_RS00410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_RS00415 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LCQ53_RS00420 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS00420 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS00420 PF00563 EAL domain LCQ53_RS00425 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS00425 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS00425 PF00563 EAL domain LCQ53_RS00435 PF17152 Periplasmic sensor domain LCQ53_RS00435 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS00440 PF01551 Peptidase family M23 LCQ53_RS00445 PF00072 Response regulator receiver domain LCQ53_RS00445 PF01627 Hpt domain LCQ53_RS00445 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS00445 PF00672 HAMP domain LCQ53_RS00445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS00460 PF01590 GAF domain LCQ53_RS00460 PF00360 Phytochrome region LCQ53_RS00460 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS00460 PF00563 EAL domain LCQ53_RS00475 PF00155 Aminotransferase class I and II LCQ53_RS00490 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS00500 PF01381 Helix-turn-helix LCQ53_RS00505 PF01012 Electron transfer flavoprotein domain LCQ53_RS00505 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_RS00510 PF01012 Electron transfer flavoprotein domain LCQ53_RS00515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS00515 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS00515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS00520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LCQ53_RS00520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LCQ53_RS00525 PF00378 Enoyl-CoA hydratase/isomerase LCQ53_RS00530 PF02803 Thiolase, C-terminal domain LCQ53_RS00530 PF00108 Thiolase, N-terminal domain LCQ53_RS00540 PF00011 Hsp20/alpha crystallin family LCQ53_RS00545 PF10369 Small subunit of acetolactate synthase LCQ53_RS00550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_RS00550 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_RS00550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_RS00555 PF04079 Segregation and condensation complex subunit ScpB LCQ53_RS00560 PF02616 Segregation and condensation protein ScpA LCQ53_RS00565 PF00149 Calcineurin-like phosphoesterase LCQ53_RS00575 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS00575 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS00580 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_RS00590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS00590 PF05043 Mga helix-turn-helix domain LCQ53_RS00590 PF00874 PRD domain LCQ53_RS00590 PF08279 HTH domain LCQ53_RS00595 PF00106 short chain dehydrogenase LCQ53_RS00600 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_RS00600 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_RS00605 PF00293 NUDIX domain LCQ53_RS00610 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS00615 PF01098 Cell cycle protein LCQ53_RS00620 PF01136 Peptidase family U32 LCQ53_RS00620 PF16325 Peptidase family U32 C-terminal domain LCQ53_RS00630 PF17864 RuvB AAA lid domain LCQ53_RS00630 PF05491 RuvB C-terminal winged helix domain LCQ53_RS00630 PF05496 Holliday junction DNA helicase RuvB P-loop domain LCQ53_RS00635 PF01330 RuvA N terminal domain LCQ53_RS00635 PF07499 RuvA, C-terminal domain LCQ53_RS00650 PF04172 LrgB-like family LCQ53_RS00670 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LCQ53_RS00670 PF18277 AbrB C-terminal domain LCQ53_RS00690 PF01053 Cys/Met metabolism PLP-dependent enzyme LCQ53_RS00695 PF00005 ABC transporter LCQ53_RS00700 PF02653 Branched-chain amino acid transport system / permease component LCQ53_RS00715 PF00575 S1 RNA binding domain LCQ53_RS00715 PF03725 3' exoribonuclease family, domain 2 LCQ53_RS00715 PF00013 KH domain LCQ53_RS00715 PF01138 3' exoribonuclease family, domain 1 LCQ53_RS00715 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LCQ53_RS00720 PF00312 Ribosomal protein S15 LCQ53_RS00725 PF14748 Pyrroline-5-carboxylate reductase dimerisation LCQ53_RS00725 PF03807 NADP oxidoreductase coenzyme F420-dependent LCQ53_RS00730 PF00849 RNA pseudouridylate synthase LCQ53_RS00730 PF01479 S4 domain LCQ53_RS00735 PF01252 Signal peptidase (SPase) II LCQ53_RS00740 PF01761 3-dehydroquinate synthase LCQ53_RS00755 PF04472 Cell division protein SepF LCQ53_RS00760 PF01168 Alanine racemase, N-terminal domain LCQ53_RS00770 PF04055 Radical SAM superfamily LCQ53_RS00770 PF16199 Radical_SAM C-terminal domain LCQ53_RS00775 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_RS00775 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_RS00780 PF02142 MGS-like domain LCQ53_RS00785 PF01098 Cell cycle protein LCQ53_RS00790 PF03776 Septum formation topological specificity factor MinE LCQ53_RS00795 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LCQ53_RS00800 PF03775 Septum formation inhibitor MinC, C-terminal domain LCQ53_RS00805 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS00805 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_RS00825 PF04002 RadC-like JAB domain LCQ53_RS00830 PF06838 Methionine gamma-lyase LCQ53_RS00840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LCQ53_RS00845 PF01119 DNA mismatch repair protein, C-terminal domain LCQ53_RS00845 PF08676 MutL C terminal dimerisation domain LCQ53_RS00850 PF05190 MutS family domain IV LCQ53_RS00850 PF01624 MutS domain I LCQ53_RS00850 PF05188 MutS domain II LCQ53_RS00850 PF05192 MutS domain III LCQ53_RS00850 PF00488 MutS domain V LCQ53_RS00855 PF04055 Radical SAM superfamily LCQ53_RS00855 PF01938 TRAM domain LCQ53_RS00855 PF00919 Uncharacterized protein family UPF0004 LCQ53_RS00860 PF03275 UDP-galactopyranose mutase LCQ53_RS00865 PF02690 Na+/Pi-cotransporter LCQ53_RS00870 PF00128 Alpha amylase, catalytic domain LCQ53_RS00870 PF02903 Alpha amylase, N-terminal ig-like domain LCQ53_RS00875 PF00343 Carbohydrate phosphorylase LCQ53_RS00880 PF08323 Starch synthase catalytic domain LCQ53_RS00880 PF00534 Glycosyl transferases group 1 LCQ53_RS00885 PF00483 Nucleotidyl transferase LCQ53_RS00890 PF00483 Nucleotidyl transferase LCQ53_RS00895 PF00128 Alpha amylase, catalytic domain LCQ53_RS00895 PF02806 Alpha amylase, C-terminal all-beta domain LCQ53_RS00895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LCQ53_RS00900 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_RS00900 PF13291 ACT domain LCQ53_RS00905 PF00448 SRP54-type protein, GTPase domain LCQ53_RS00905 PF02881 SRP54-type protein, helical bundle domain LCQ53_RS00910 PF02463 RecF/RecN/SMC N terminal domain LCQ53_RS00910 PF06470 SMC proteins Flexible Hinge Domain LCQ53_RS00915 PF00035 Double-stranded RNA binding motif LCQ53_RS00915 PF14622 Ribonuclease-III-like LCQ53_RS00920 PF02504 Fatty acid synthesis protein LCQ53_RS00925 PF01783 Ribosomal L32p protein family LCQ53_RS00935 PF00871 Acetokinase family LCQ53_RS00940 PF01515 Phosphate acetyl/butaryl transferase LCQ53_RS00945 PF05636 HIGH Nucleotidyl Transferase LCQ53_RS00950 PF07670 Nucleoside recognition LCQ53_RS00960 PF01467 Cytidylyltransferase-like LCQ53_RS00970 PF00269 Small, acid-soluble spore proteins, alpha/beta type LCQ53_RS00975 PF00708 Acylphosphatase LCQ53_RS00980 PF17191 RecG wedge domain LCQ53_RS00980 PF00271 Helicase conserved C-terminal domain LCQ53_RS00980 PF00270 DEAD/DEAH box helicase LCQ53_RS00985 PF02734 DAK2 domain LCQ53_RS00985 PF13684 Dihydroxyacetone kinase family LCQ53_RS00995 PF00830 Ribosomal L28 family LCQ53_RS01020 PF00391 PEP-utilising enzyme, mobile domain LCQ53_RS01020 PF00224 Pyruvate kinase, barrel domain LCQ53_RS01020 PF02887 Pyruvate kinase, alpha/beta domain LCQ53_RS01045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS01045 PF03466 LysR substrate binding domain LCQ53_RS01055 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS01060 PF00005 ABC transporter LCQ53_RS01075 PF00977 Histidine biosynthesis protein LCQ53_RS01080 PF00117 Glutamine amidotransferase class-I LCQ53_RS01090 PF18698 Histidine kinase sensor domain LCQ53_RS01090 PF00672 HAMP domain LCQ53_RS01090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS01090 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS01090 PF00989 PAS fold LCQ53_RS01095 PF00072 Response regulator receiver domain LCQ53_RS01095 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS01120 PF01592 NifU-like N terminal domain LCQ53_RS01125 PF00266 Aminotransferase class-V LCQ53_RS01130 PF02082 Transcriptional regulator LCQ53_RS01135 PF01943 Polysaccharide biosynthesis protein LCQ53_RS01135 PF14667 Polysaccharide biosynthesis C-terminal domain LCQ53_RS01140 PF02653 Branched-chain amino acid transport system / permease component LCQ53_RS01145 PF02653 Branched-chain amino acid transport system / permease component LCQ53_RS01150 PF00005 ABC transporter LCQ53_RS01155 PF02608 ABC transporter substrate-binding protein PnrA-like LCQ53_RS01160 PF00579 tRNA synthetases class I (W and Y) LCQ53_RS01185 PF00149 Calcineurin-like phosphoesterase LCQ53_RS01190 PF04542 Sigma-70 region 2 LCQ53_RS01190 PF08281 Sigma-70, region 4 LCQ53_RS01195 PF00588 SpoU rRNA Methylase family LCQ53_RS01195 PF08032 RNA 2'-O ribose methyltransferase substrate binding LCQ53_RS01200 PF00636 Ribonuclease III domain LCQ53_RS01205 PF01406 tRNA synthetases class I (C) catalytic domain LCQ53_RS01205 PF09190 DALR domain LCQ53_RS01210 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS01220 PF00005 ABC transporter LCQ53_RS01225 PF02632 BioY family LCQ53_RS01230 PF06968 Biotin and Thiamin Synthesis associated domain LCQ53_RS01230 PF04055 Radical SAM superfamily LCQ53_RS01245 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS01245 PF01627 Hpt domain LCQ53_RS01245 PF00072 Response regulator receiver domain LCQ53_RS01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS01250 PF00689 Cation transporting ATPase, C-terminus LCQ53_RS01250 PF00690 Cation transporter/ATPase, N-terminus LCQ53_RS01255 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LCQ53_RS01255 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LCQ53_RS01260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS01260 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_RS01265 PF00231 ATP synthase LCQ53_RS01270 PF00306 ATP synthase alpha/beta chain, C terminal domain LCQ53_RS01270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS01270 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_RS01275 PF00213 ATP synthase delta (OSCP) subunit LCQ53_RS01280 PF00430 ATP synthase B/B' CF(0) LCQ53_RS01285 PF00137 ATP synthase subunit C LCQ53_RS01290 PF00119 ATP synthase A chain LCQ53_RS01335 PF00580 UvrD/REP helicase N-terminal domain LCQ53_RS01335 PF13361 UvrD-like helicase C-terminal domain LCQ53_RS01345 PF01371 Trp repressor protein LCQ53_RS01365 PF00005 ABC transporter LCQ53_RS01370 PF07730 Histidine kinase LCQ53_RS01375 PF00072 Response regulator receiver domain LCQ53_RS01375 PF00196 Bacterial regulatory proteins, luxR family LCQ53_RS01380 PF03471 Transporter associated domain LCQ53_RS01380 PF01595 Cyclin M transmembrane N-terminal domain LCQ53_RS01380 PF00571 CBS domain LCQ53_RS01390 PF13361 UvrD-like helicase C-terminal domain LCQ53_RS01390 PF00580 UvrD/REP helicase N-terminal domain LCQ53_RS01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain LCQ53_RS01400 PF01926 50S ribosome-binding GTPase LCQ53_RS01400 PF12631 MnmE helical domain LCQ53_RS01400 PF10396 GTP-binding protein TrmE N-terminus LCQ53_RS01410 PF03932 CutC family LCQ53_RS01425 PF05524 PEP-utilising enzyme, N-terminal LCQ53_RS01425 PF00391 PEP-utilising enzyme, mobile domain LCQ53_RS01425 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_RS01430 PF00381 PTS HPr component phosphorylation site LCQ53_RS01435 PF00874 PRD domain LCQ53_RS01435 PF03123 CAT RNA binding domain LCQ53_RS01440 PF16360 GTP-binding GTPase Middle Region LCQ53_RS01440 PF13167 GTP-binding GTPase N-terminal LCQ53_RS01440 PF01926 50S ribosome-binding GTPase LCQ53_RS01460 PF00106 short chain dehydrogenase LCQ53_RS01465 PF01418 Helix-turn-helix domain, rpiR family LCQ53_RS01465 PF01380 SIS domain LCQ53_RS01470 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS01470 PF00107 Zinc-binding dehydrogenase LCQ53_RS01475 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS01480 PF03609 PTS system sorbose-specific iic component LCQ53_RS01485 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS01485 PF03610 PTS system fructose IIA component LCQ53_RS01490 PF03610 PTS system fructose IIA component LCQ53_RS01500 PF01554 MatE LCQ53_RS01515 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS01520 PF00005 ABC transporter LCQ53_RS01520 PF17845 FbpC C-terminal regulatory nucleotide binding domain LCQ53_RS01525 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS01525 PF14602 Hexapeptide repeat of succinyl-transferase LCQ53_RS01525 PF12804 MobA-like NTP transferase domain LCQ53_RS01530 PF13478 XdhC Rossmann domain LCQ53_RS01530 PF02625 XdhC and CoxI family LCQ53_RS01535 PF02810 SEC-C motif LCQ53_RS01535 PF00557 Metallopeptidase family M24 LCQ53_RS01545 PF00005 ABC transporter LCQ53_RS01545 PF13732 Domain of unknown function (DUF4162) LCQ53_RS01550 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS01550 PF08362 YcdC-like protein, C-terminal region LCQ53_RS01555 PF13091 PLD-like domain LCQ53_RS01580 PF13732 Domain of unknown function (DUF4162) LCQ53_RS01580 PF00005 ABC transporter LCQ53_RS01600 PF00056 lactate/malate dehydrogenase, NAD binding domain LCQ53_RS01600 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LCQ53_RS01605 PF00563 EAL domain LCQ53_RS01605 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS01605 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS01615 PF02645 Uncharacterised protein, DegV family COG1307 LCQ53_RS01620 PF00994 Probable molybdopterin binding domain LCQ53_RS01630 PF01967 MoaC family LCQ53_RS01640 PF02625 XdhC and CoxI family LCQ53_RS01640 PF13478 XdhC Rossmann domain LCQ53_RS01645 PF01979 Amidohydrolase family LCQ53_RS01650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LCQ53_RS01650 PF00111 2Fe-2S iron-sulfur cluster binding domain LCQ53_RS01650 PF01799 [2Fe-2S] binding domain LCQ53_RS01650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LCQ53_RS01655 PF00860 Permease family LCQ53_RS01660 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS01660 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_RS01665 PF01979 Amidohydrolase family LCQ53_RS01675 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_RS01680 PF07687 Peptidase dimerisation domain LCQ53_RS01680 PF01546 Peptidase family M20/M25/M40 LCQ53_RS01685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LCQ53_RS01685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LCQ53_RS01690 PF00696 Amino acid kinase family LCQ53_RS01695 PF09278 MerR, DNA binding LCQ53_RS01695 PF00376 MerR family regulatory protein LCQ53_RS01700 PF00376 MerR family regulatory protein LCQ53_RS01700 PF09278 MerR, DNA binding LCQ53_RS01705 PF01980 tRNA-methyltransferase O LCQ53_RS01705 PF18389 TrmO C-terminal domain LCQ53_RS01715 PF00085 Thioredoxin LCQ53_RS01730 PF01381 Helix-turn-helix LCQ53_RS01740 PF00877 NlpC/P60 family LCQ53_RS01750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_RS01750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_RS01760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS01760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS01760 PF01842 ACT domain LCQ53_RS01765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_RS01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS01770 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS01775 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS01780 PF08279 HTH domain LCQ53_RS01780 PF05043 Mga helix-turn-helix domain LCQ53_RS01780 PF00874 PRD domain LCQ53_RS01780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS01785 PF00453 Ribosomal protein L20 LCQ53_RS01790 PF01632 Ribosomal protein L35 LCQ53_RS01795 PF00707 Translation initiation factor IF-3, C-terminal domain LCQ53_RS01795 PF05198 Translation initiation factor IF-3, N-terminal domain LCQ53_RS01800 PF16658 Class II release factor RF3, C-terminal domain LCQ53_RS01800 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS01800 PF03144 Elongation factor Tu domain 2 LCQ53_RS01805 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LCQ53_RS01810 PF00005 ABC transporter LCQ53_RS01810 PF00571 CBS domain LCQ53_RS01825 PF08279 HTH domain LCQ53_RS01825 PF13280 WYL domain LCQ53_RS01830 PF01263 Aldose 1-epimerase LCQ53_RS01835 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS01840 PF04073 Aminoacyl-tRNA editing domain LCQ53_RS01845 PF00294 pfkB family carbohydrate kinase LCQ53_RS01850 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS01850 PF00107 Zinc-binding dehydrogenase LCQ53_RS01855 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS01860 PF03611 PTS system sugar-specific permease component LCQ53_RS01865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS01875 PF05043 Mga helix-turn-helix domain LCQ53_RS01875 PF00874 PRD domain LCQ53_RS01875 PF08279 HTH domain LCQ53_RS01875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS01885 PF12704 MacB-like periplasmic core domain LCQ53_RS01885 PF02687 FtsX-like permease family LCQ53_RS01890 PF02687 FtsX-like permease family LCQ53_RS01890 PF00005 ABC transporter LCQ53_RS01890 PF12704 MacB-like periplasmic core domain LCQ53_RS01900 PF16199 Radical_SAM C-terminal domain LCQ53_RS01900 PF04055 Radical SAM superfamily LCQ53_RS01910 PF13344 Haloacid dehalogenase-like hydrolase LCQ53_RS01915 PF13685 Iron-containing alcohol dehydrogenase LCQ53_RS01925 PF13685 Iron-containing alcohol dehydrogenase LCQ53_RS01930 PF02502 Ribose/Galactose Isomerase LCQ53_RS01935 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS01935 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS01940 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_RS01960 PF02934 GatB/GatE catalytic domain LCQ53_RS01960 PF02637 GatB domain LCQ53_RS01965 PF01425 Amidase LCQ53_RS01970 PF02686 Glu-tRNAGln amidotransferase C subunit LCQ53_RS01995 PF03193 RsgA GTPase LCQ53_RS01995 PF16745 RsgA N-terminal domain LCQ53_RS02000 PF00069 Protein kinase domain LCQ53_RS02000 PF03793 PASTA domain LCQ53_RS02010 PF04055 Radical SAM superfamily LCQ53_RS02015 PF01029 NusB family LCQ53_RS02015 PF01189 16S rRNA methyltransferase RsmB/F LCQ53_RS02020 PF00551 Formyl transferase LCQ53_RS02020 PF02911 Formyl transferase, C-terminal domain LCQ53_RS02025 PF01327 Polypeptide deformylase LCQ53_RS02030 PF04851 Type III restriction enzyme, res subunit LCQ53_RS02030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LCQ53_RS02030 PF00271 Helicase conserved C-terminal domain LCQ53_RS02030 PF17764 3′ DNA-binding domain (3′BD) LCQ53_RS02030 PF18074 Primosomal protein N C-terminal domain LCQ53_RS02035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LCQ53_RS02035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LCQ53_RS02035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LCQ53_RS02035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LCQ53_RS02040 PF01475 Ferric uptake regulator family LCQ53_RS02045 PF01966 HD domain LCQ53_RS02045 PF13286 Phosphohydrolase-associated domain LCQ53_RS02050 PF02666 Phosphatidylserine decarboxylase LCQ53_RS02055 PF01066 CDP-alcohol phosphatidyltransferase LCQ53_RS02070 PF00873 AcrB/AcrD/AcrF family LCQ53_RS02075 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LCQ53_RS02075 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LCQ53_RS02080 PF00478 IMP dehydrogenase / GMP reductase domain LCQ53_RS02080 PF00571 CBS domain LCQ53_RS02090 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_RS02090 PF13247 4Fe-4S dicluster domain LCQ53_RS02090 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS02095 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LCQ53_RS02095 PF00175 Oxidoreductase NAD-binding domain LCQ53_RS02105 PF00118 TCP-1/cpn60 chaperonin family LCQ53_RS02110 PF00166 Chaperonin 10 Kd subunit LCQ53_RS02115 PF04229 GrpB protein LCQ53_RS02120 PF00749 tRNA synthetases class I (E and Q), catalytic domain LCQ53_RS02120 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LCQ53_RS02125 PF18073 Rubredoxin metal binding domain LCQ53_RS02135 PF07724 AAA domain (Cdc48 subfamily) LCQ53_RS02135 PF17871 AAA lid domain LCQ53_RS02135 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_RS02135 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_RS02135 PF02861 Clp amino terminal domain, pathogenicity island component LCQ53_RS02145 PF02844 Phosphoribosylglycinamide synthetase, N domain LCQ53_RS02145 PF02843 Phosphoribosylglycinamide synthetase, C domain LCQ53_RS02145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LCQ53_RS02150 PF00551 Formyl transferase LCQ53_RS02155 PF00586 AIR synthase related protein, N-terminal domain LCQ53_RS02155 PF02769 AIR synthase related protein, C-terminal domain LCQ53_RS02165 PF00731 AIR carboxylase LCQ53_RS02190 PF00156 Phosphoribosyl transferase domain LCQ53_RS02200 PF01180 Dihydroorotate dehydrogenase LCQ53_RS02205 PF00175 Oxidoreductase NAD-binding domain LCQ53_RS02205 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LCQ53_RS02210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_RS02215 PF16736 Single Cache-like LCQ53_RS02215 PF00989 PAS fold LCQ53_RS02215 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS02220 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS02220 PF00072 Response regulator receiver domain LCQ53_RS02225 PF01895 PhoU domain LCQ53_RS02230 PF00005 ABC transporter LCQ53_RS02235 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS02240 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS02245 PF12849 PBP superfamily domain LCQ53_RS02255 PF01979 Amidohydrolase family LCQ53_RS02265 PF02954 Bacterial regulatory protein, Fis family LCQ53_RS02265 PF00158 Sigma-54 interaction domain LCQ53_RS02265 PF00989 PAS fold LCQ53_RS02275 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal LCQ53_RS02275 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal LCQ53_RS02295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_RS02295 PF03129 Anticodon binding domain LCQ53_RS02300 PF02565 Recombination protein O C terminal LCQ53_RS02300 PF11967 Recombination protein O N terminal LCQ53_RS02305 PF07650 KH domain LCQ53_RS02305 PF01926 50S ribosome-binding GTPase LCQ53_RS02310 PF08367 Peptidase M16C associated LCQ53_RS02310 PF00675 Insulinase (Peptidase family M16) LCQ53_RS02310 PF05193 Peptidase M16 inactive domain LCQ53_RS02330 PF13411 MerR HTH family regulatory protein LCQ53_RS02330 PF07739 TipAS antibiotic-recognition domain LCQ53_RS02335 PF01808 AICARFT/IMPCHase bienzyme LCQ53_RS02335 PF02142 MGS-like domain LCQ53_RS02345 PF02142 MGS-like domain LCQ53_RS02360 PF01183 Glycosyl hydrolases family 25 LCQ53_RS02365 PF04542 Sigma-70 region 2 LCQ53_RS02365 PF04545 Sigma-70, region 4 LCQ53_RS02375 PF12327 FtsZ family, C-terminal domain LCQ53_RS02375 PF00091 Tubulin/FtsZ family, GTPase domain LCQ53_RS02385 PF01098 Cell cycle protein LCQ53_RS02390 PF08245 Mur ligase middle domain LCQ53_RS02390 PF02875 Mur ligase family, glutamate ligase domain LCQ53_RS02395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LCQ53_RS02395 PF00953 Glycosyl transferase family 4 LCQ53_RS02400 PF03793 PASTA domain LCQ53_RS02400 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_RS02400 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS02405 PF03793 PASTA domain LCQ53_RS02405 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_RS02405 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS02415 PF01795 MraW methylase family LCQ53_RS02420 PF02381 MraZ protein, putative antitoxin-like LCQ53_RS02425 PF01790 Prolipoprotein diacylglyceryl transferase LCQ53_RS02430 PF01926 50S ribosome-binding GTPase LCQ53_RS02430 PF06071 Protein of unknown function (DUF933) LCQ53_RS02435 PF00877 NlpC/P60 family LCQ53_RS02440 PF00155 Aminotransferase class I and II LCQ53_RS02450 PF00120 Glutamine synthetase, catalytic domain LCQ53_RS02450 PF03951 Glutamine synthetase, beta-Grasp domain LCQ53_RS02455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LCQ53_RS02455 PF02142 MGS-like domain LCQ53_RS02455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LCQ53_RS02460 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LCQ53_RS02460 PF00117 Glutamine amidotransferase class-I LCQ53_RS02465 PF02677 Epoxyqueuosine reductase QueH LCQ53_RS02470 PF01906 Putative heavy-metal-binding LCQ53_RS02545 PF01510 N-acetylmuramoyl-L-alanine amidase LCQ53_RS02545 PF01471 Putative peptidoglycan binding domain LCQ53_RS02575 PF04865 Baseplate J-like protein LCQ53_RS02580 PF10934 Protein of unknown function (DUF2634) LCQ53_RS02610 PF09393 Phage tail tube protein LCQ53_RS02705 PF12961 Domain of unknown function (DUF3850) LCQ53_RS02825 PF09827 CRISPR associated protein Cas2 LCQ53_RS02830 PF01867 CRISPR associated protein Cas1 LCQ53_RS02870 PF01795 MraW methylase family LCQ53_RS02880 PF06445 GyrI-like small molecule binding domain LCQ53_RS02880 PF13411 MerR HTH family regulatory protein LCQ53_RS02885 PF01554 MatE LCQ53_RS02890 PF03030 Inorganic H+ pyrophosphatase LCQ53_RS02895 PF01063 Amino-transferase class IV LCQ53_RS02900 PF00186 Dihydrofolate reductase LCQ53_RS02905 PF00303 Thymidylate synthase LCQ53_RS02910 PF01594 AI-2E family transporter LCQ53_RS02920 PF00155 Aminotransferase class I and II LCQ53_RS02925 PF00155 Aminotransferase class I and II LCQ53_RS02930 PF05173 Dihydrodipicolinate reductase, C-terminus LCQ53_RS02930 PF01113 Dihydrodipicolinate reductase, N-terminus LCQ53_RS02935 PF00701 Dihydrodipicolinate synthetase family LCQ53_RS02940 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LCQ53_RS02950 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS02950 PF03144 Elongation factor Tu domain 2 LCQ53_RS02950 PF00679 Elongation factor G C-terminus LCQ53_RS02960 PF06968 Biotin and Thiamin Synthesis associated domain LCQ53_RS02960 PF04055 Radical SAM superfamily LCQ53_RS02980 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS02985 PF06874 Firmicute fructose-1,6-bisphosphatase LCQ53_RS02990 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_RS02990 PF06689 ClpX C4-type zinc finger LCQ53_RS02990 PF07724 AAA domain (Cdc48 subfamily) LCQ53_RS02995 PF00155 Aminotransferase class I and II LCQ53_RS02995 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS03000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LCQ53_RS03005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS03005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS03010 PF00664 ABC transporter transmembrane region LCQ53_RS03010 PF00005 ABC transporter LCQ53_RS03015 PF00664 ABC transporter transmembrane region LCQ53_RS03015 PF00005 ABC transporter LCQ53_RS03020 PF01047 MarR family LCQ53_RS03025 PF07859 alpha/beta hydrolase fold LCQ53_RS03040 PF01043 SecA preprotein cross-linking domain LCQ53_RS03040 PF07517 SecA DEAD-like domain LCQ53_RS03040 PF02810 SEC-C motif LCQ53_RS03040 PF07516 SecA Wing and Scaffold domain LCQ53_RS03045 PF01022 Bacterial regulatory protein, arsR family LCQ53_RS03050 PF03773 Predicted permease LCQ53_RS03055 PF13350 Tyrosine phosphatase family LCQ53_RS03065 PF00248 Aldo/keto reductase family LCQ53_RS03070 PF16193 AAA C-terminal domain LCQ53_RS03070 PF12002 MgsA AAA+ ATPase C terminal LCQ53_RS03070 PF05496 Holliday junction DNA helicase RuvB P-loop domain LCQ53_RS03080 PF12116 Stage III sporulation protein D LCQ53_RS03085 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_RS03085 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_RS03090 PF07683 Cobalamin synthesis protein cobW C-terminal domain LCQ53_RS03090 PF02492 CobW/HypB/UreG, nucleotide-binding domain LCQ53_RS03095 PF02492 CobW/HypB/UreG, nucleotide-binding domain LCQ53_RS03095 PF07683 Cobalamin synthesis protein cobW C-terminal domain LCQ53_RS03115 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LCQ53_RS03115 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LCQ53_RS03120 PF03450 CO dehydrogenase flavoprotein C-terminal domain LCQ53_RS03120 PF00941 FAD binding domain in molybdopterin dehydrogenase LCQ53_RS03125 PF00111 2Fe-2S iron-sulfur cluster binding domain LCQ53_RS03125 PF01799 [2Fe-2S] binding domain LCQ53_RS03140 PF00313 'Cold-shock' DNA-binding domain LCQ53_RS03145 PF00455 DeoR C terminal sensor domain LCQ53_RS03145 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS03150 PF02378 Phosphotransferase system, EIIC LCQ53_RS03150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS03150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS03155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS03155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS03160 PF01791 DeoC/LacD family aldolase LCQ53_RS03170 PF00795 Carbon-nitrogen hydrolase LCQ53_RS03170 PF02540 NAD synthase LCQ53_RS03175 PF03462 PCRF domain LCQ53_RS03175 PF00472 RF-1 domain LCQ53_RS03180 PF05175 Methyltransferase small domain LCQ53_RS03180 PF17827 PrmC N-terminal domain LCQ53_RS03185 PF07136 Protein of unknown function (DUF1385) LCQ53_RS03190 PF01197 Ribosomal protein L31 LCQ53_RS03195 PF07497 Rho termination factor, RNA-binding domain LCQ53_RS03195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS03195 PF07498 Rho termination factor, N-terminal domain LCQ53_RS03200 PF04539 Sigma-70 region 3 LCQ53_RS03200 PF04545 Sigma-70, region 4 LCQ53_RS03200 PF04542 Sigma-70 region 2 LCQ53_RS03205 PF13581 Histidine kinase-like ATPase domain LCQ53_RS03210 PF01740 STAS domain LCQ53_RS03225 PF08245 Mur ligase middle domain LCQ53_RS03225 PF02875 Mur ligase family, glutamate ligase domain LCQ53_RS03230 PF08264 Anticodon-binding domain of tRNA LCQ53_RS03230 PF00133 tRNA synthetases class I (I, L, M and V) LCQ53_RS03230 PF10458 Valyl tRNA synthetase tRNA binding arm LCQ53_RS03255 PF00155 Aminotransferase class I and II LCQ53_RS03280 PF00285 Citrate synthase, C-terminal domain LCQ53_RS03285 PF00005 ABC transporter LCQ53_RS03290 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_RS03305 PF05036 Sporulation related domain LCQ53_RS03305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LCQ53_RS03305 PF08239 Bacterial SH3 domain LCQ53_RS03335 PF04545 Sigma-70, region 4 LCQ53_RS03335 PF04539 Sigma-70 region 3 LCQ53_RS03335 PF04542 Sigma-70 region 2 LCQ53_RS03335 PF00140 Sigma-70 factor, region 1.2 LCQ53_RS03335 PF03979 Sigma-70 factor, region 1.1 LCQ53_RS03340 PF00290 Tryptophan synthase alpha chain LCQ53_RS03345 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_RS03350 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LCQ53_RS03355 PF00218 Indole-3-glycerol phosphate synthase LCQ53_RS03360 PF00117 Glutamine amidotransferase class-I LCQ53_RS03360 PF00591 Glycosyl transferase family, a/b domain LCQ53_RS03360 PF02885 Glycosyl transferase family, helical bundle domain LCQ53_RS03365 PF04715 Anthranilate synthase component I, N terminal region LCQ53_RS03365 PF00425 chorismate binding enzyme LCQ53_RS03375 PF00180 Isocitrate/isopropylmalate dehydrogenase LCQ53_RS03380 PF00037 4Fe-4S binding domain LCQ53_RS03380 PF02256 Iron hydrogenase small subunit LCQ53_RS03380 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LCQ53_RS03380 PF02906 Iron only hydrogenase large subunit, C-terminal domain LCQ53_RS03385 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS03385 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_RS03390 PF00302 Chloramphenicol acetyltransferase LCQ53_RS03395 PF02645 Uncharacterised protein, DegV family COG1307 LCQ53_RS03410 PF13180 PDZ domain LCQ53_RS03415 PF02397 Bacterial sugar transferase LCQ53_RS03420 PF03816 Cell envelope-related transcriptional attenuator domain LCQ53_RS03435 PF00072 Response regulator receiver domain LCQ53_RS03435 PF08769 Sporulation initiation factor Spo0A C terminal LCQ53_RS03440 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LCQ53_RS03440 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LCQ53_RS03445 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS03450 PF01575 MaoC like domain LCQ53_RS03455 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS03455 PF00107 Zinc-binding dehydrogenase LCQ53_RS03460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_RS03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS03465 PF02126 Phosphotriesterase family LCQ53_RS03470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS03470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS03475 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS03480 PF03611 PTS system sugar-specific permease component LCQ53_RS03495 PF00874 PRD domain LCQ53_RS03495 PF08279 HTH domain LCQ53_RS03495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS03495 PF05043 Mga helix-turn-helix domain LCQ53_RS03500 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS03505 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS03505 PF00107 Zinc-binding dehydrogenase LCQ53_RS03510 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_RS03515 PF00535 Glycosyl transferase family 2 LCQ53_RS03520 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_RS03520 PF00535 Glycosyl transferase family 2 LCQ53_RS03530 PF00483 Nucleotidyl transferase LCQ53_RS03535 PF01467 Cytidylyltransferase-like LCQ53_RS03540 PF00005 ABC transporter LCQ53_RS03545 PF01061 ABC-2 type transporter LCQ53_RS03555 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_RS03560 PF13472 GDSL-like Lipase/Acylhydrolase family LCQ53_RS03575 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LCQ53_RS03590 PF00535 Glycosyl transferase family 2 LCQ53_RS03600 PF02719 Polysaccharide biosynthesis protein LCQ53_RS03605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LCQ53_RS03615 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS03620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS03620 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS03625 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS03625 PF12464 Maltose acetyltransferase LCQ53_RS03630 PF01575 MaoC like domain LCQ53_RS03640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LCQ53_RS03640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LCQ53_RS03640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LCQ53_RS03645 PF02350 UDP-N-acetylglucosamine 2-epimerase LCQ53_RS03650 PF00733 Asparagine synthase LCQ53_RS03650 PF13537 Glutamine amidotransferase domain LCQ53_RS03660 PF03023 Lipid II flippase MurJ LCQ53_RS03680 PF02397 Bacterial sugar transferase LCQ53_RS03685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LCQ53_RS03690 PF03009 Glycerophosphoryl diester phosphodiesterase family LCQ53_RS03695 PF00082 Subtilase family LCQ53_RS03695 PF01483 Proprotein convertase P-domain LCQ53_RS03705 PF04138 GtrA-like protein LCQ53_RS03715 PF00535 Glycosyl transferase family 2 LCQ53_RS03725 PF02457 DisA bacterial checkpoint controller nucleotide-binding LCQ53_RS03750 PF00152 tRNA synthetases class II (D, K and N) LCQ53_RS03750 PF01336 OB-fold nucleic acid binding domain LCQ53_RS03755 PF01272 Transcription elongation factor, GreA/GreB, C-term LCQ53_RS03755 PF03449 Transcription elongation factor, N-terminal LCQ53_RS03760 PF01207 Dihydrouridine synthase (Dus) LCQ53_RS03765 PF03309 Type III pantothenate kinase LCQ53_RS03775 PF02237 Biotin protein ligase C terminal domain LCQ53_RS03775 PF03099 Biotin/lipoate A/B protein ligase family LCQ53_RS03775 PF08279 HTH domain LCQ53_RS03780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LCQ53_RS03780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LCQ53_RS03790 PF00005 ABC transporter LCQ53_RS03795 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS03800 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_RS03805 PF01145 SPFH domain / Band 7 family LCQ53_RS03815 PF08032 RNA 2'-O ribose methyltransferase substrate binding LCQ53_RS03815 PF00588 SpoU rRNA Methylase family LCQ53_RS03825 PF02386 Cation transport protein LCQ53_RS03830 PF00365 Phosphofructokinase LCQ53_RS03835 PF14579 Helix-hairpin-helix motif LCQ53_RS03835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LCQ53_RS03835 PF02811 PHP domain LCQ53_RS03835 PF07733 Bacterial DNA polymerase III alpha NTPase domain LCQ53_RS03845 PF01225 Mur ligase family, catalytic domain LCQ53_RS03845 PF02875 Mur ligase family, glutamate ligase domain LCQ53_RS03845 PF08245 Mur ligase middle domain LCQ53_RS03850 PF00860 Permease family LCQ53_RS03855 PF12706 Beta-lactamase superfamily domain LCQ53_RS03860 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS03865 PF02733 Dak1 domain LCQ53_RS03865 PF02734 DAK2 domain LCQ53_RS03870 PF02733 Dak1 domain LCQ53_RS03880 PF03611 PTS system sugar-specific permease component LCQ53_RS03890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS03895 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS03895 PF00107 Zinc-binding dehydrogenase LCQ53_RS03905 PF00209 Sodium:neurotransmitter symporter family LCQ53_RS03910 PF00672 HAMP domain LCQ53_RS03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS03910 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS03915 PF00072 Response regulator receiver domain LCQ53_RS03915 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS03965 PF04865 Baseplate J-like protein LCQ53_RS03985 PF01476 LysM domain LCQ53_RS04105 PF16403 Domain of unknown function (DUF5011) LCQ53_RS04110 PF12833 Helix-turn-helix domain LCQ53_RS04110 PF00072 Response regulator receiver domain LCQ53_RS04135 PF00381 PTS HPr component phosphorylation site LCQ53_RS04140 PF14527 WhiA LAGLIDADG-like domain LCQ53_RS04140 PF10298 WhiA N-terminal LAGLIDADG-like domain LCQ53_RS04140 PF02650 WhiA C-terminal HTH domain LCQ53_RS04145 PF03668 P-loop ATPase protein family LCQ53_RS04150 PF01565 FAD binding domain LCQ53_RS04150 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LCQ53_RS04155 PF00480 ROK family LCQ53_RS04160 PF07475 HPr Serine kinase C-terminal domain LCQ53_RS04160 PF02603 HPr Serine kinase N terminus LCQ53_RS04165 PF01541 GIY-YIG catalytic domain LCQ53_RS04165 PF12826 Helix-hairpin-helix motif LCQ53_RS04165 PF02151 UvrB/uvrC motif LCQ53_RS04165 PF08459 UvrC Helix-hairpin-helix N-terminal LCQ53_RS04180 PF14489 QueF-like protein LCQ53_RS04190 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS04190 PF00072 Response regulator receiver domain LCQ53_RS04225 PF01368 DHH family LCQ53_RS04225 PF00571 CBS domain LCQ53_RS04225 PF02833 DHHA2 domain LCQ53_RS04225 PF07085 DRTGG domain LCQ53_RS04230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS04230 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS04235 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS04235 PF00072 Response regulator receiver domain LCQ53_RS04250 PF01964 Radical SAM ThiC family LCQ53_RS04255 PF00209 Sodium:neurotransmitter symporter family LCQ53_RS04260 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS04260 PF07702 UTRA domain LCQ53_RS04265 PF00072 Response regulator receiver domain LCQ53_RS04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS04270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS04270 PF00072 Response regulator receiver domain LCQ53_RS04270 PF01627 Hpt domain LCQ53_RS04270 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS04270 PF00672 HAMP domain LCQ53_RS04275 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_RS04280 PF04055 Radical SAM superfamily LCQ53_RS04285 PF02901 Pyruvate formate lyase-like LCQ53_RS04285 PF01228 Glycine radical LCQ53_RS04290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS04300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04300 PF00381 PTS HPr component phosphorylation site LCQ53_RS04300 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_RS04300 PF00391 PEP-utilising enzyme, mobile domain LCQ53_RS04300 PF05524 PEP-utilising enzyme, N-terminal LCQ53_RS04305 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_RS04310 PF05043 Mga helix-turn-helix domain LCQ53_RS04310 PF08279 HTH domain LCQ53_RS04310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04310 PF00874 PRD domain LCQ53_RS04315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LCQ53_RS04315 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LCQ53_RS04320 PF00890 FAD binding domain LCQ53_RS04325 PF02445 Quinolinate synthetase A protein LCQ53_RS04340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_RS04340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_RS04345 PF00107 Zinc-binding dehydrogenase LCQ53_RS04345 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS04350 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS04360 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS04360 PF03610 PTS system fructose IIA component LCQ53_RS04365 PF03610 PTS system fructose IIA component LCQ53_RS04370 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS04395 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS04405 PF03611 PTS system sugar-specific permease component LCQ53_RS04410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS04420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04425 PF08279 HTH domain LCQ53_RS04425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04425 PF00874 PRD domain LCQ53_RS04425 PF05043 Mga helix-turn-helix domain LCQ53_RS04520 PF02368 Bacterial Ig-like domain (group 2) LCQ53_RS04565 PF04327 Cysteine protease Prp LCQ53_RS04590 PF10668 Phage terminase small subunit LCQ53_RS04590 PF03592 Terminase small subunit LCQ53_RS04665 PF01695 IstB-like ATP binding protein LCQ53_RS04725 PF02498 BRO family, N-terminal domain LCQ53_RS04725 PF10548 P22AR C-terminal domain LCQ53_RS04735 PF01726 LexA DNA binding domain LCQ53_RS04735 PF00717 Peptidase S24-like LCQ53_RS04760 PF10609 NUBPL iron-transfer P-loop NTPase LCQ53_RS04765 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_RS04770 PF02690 Na+/Pi-cotransporter LCQ53_RS04775 PF10371 Domain of unknown function LCQ53_RS04775 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LCQ53_RS04775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LCQ53_RS04775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LCQ53_RS04775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_RS04780 PF02618 YceG-like family LCQ53_RS04790 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LCQ53_RS04800 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_RS04800 PF02861 Clp amino terminal domain, pathogenicity island component LCQ53_RS04800 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_RS04800 PF07724 AAA domain (Cdc48 subfamily) LCQ53_RS04800 PF17871 AAA lid domain LCQ53_RS04805 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_RS04805 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS04810 PF07690 Major Facilitator Superfamily LCQ53_RS04815 PF17746 SfsA N-terminal OB domain LCQ53_RS04815 PF03749 Sugar fermentation stimulation protein RE domain LCQ53_RS04825 PF00005 ABC transporter LCQ53_RS04830 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS04835 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS04835 PF00072 Response regulator receiver domain LCQ53_RS04845 PF02811 PHP domain LCQ53_RS04850 PF01554 MatE LCQ53_RS04855 PF01810 LysE type translocator LCQ53_RS04875 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_RS04875 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_RS04880 PF01380 SIS domain LCQ53_RS04885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_RS04890 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_RS04890 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_RS04895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04900 PF08279 HTH domain LCQ53_RS04900 PF05043 Mga helix-turn-helix domain LCQ53_RS04900 PF00874 PRD domain LCQ53_RS04900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS04900 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04905 PF02378 Phosphotransferase system, EIIC LCQ53_RS04905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS04910 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS04910 PF00455 DeoR C terminal sensor domain LCQ53_RS04915 PF00107 Zinc-binding dehydrogenase LCQ53_RS04915 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS04925 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS04935 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS04940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS04940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS04945 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS04945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LCQ53_RS04950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS04950 PF02378 Phosphotransferase system, EIIC LCQ53_RS04950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS04955 PF00455 DeoR C terminal sensor domain LCQ53_RS04955 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS04960 PF00107 Zinc-binding dehydrogenase LCQ53_RS04960 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS04970 PF06418 CTP synthase N-terminus LCQ53_RS04970 PF00117 Glutamine amidotransferase class-I LCQ53_RS04980 PF02734 DAK2 domain LCQ53_RS04985 PF02733 Dak1 domain LCQ53_RS04990 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS04995 PF02502 Ribose/Galactose Isomerase LCQ53_RS05000 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS05015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS05020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS05020 PF02378 Phosphotransferase system, EIIC LCQ53_RS05020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS05025 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS05035 PF00877 NlpC/P60 family LCQ53_RS05040 PF02645 Uncharacterised protein, DegV family COG1307 LCQ53_RS05045 PF06827 Zinc finger found in FPG and IleRS LCQ53_RS05045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LCQ53_RS05045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LCQ53_RS05050 PF02796 Helix-turn-helix domain of resolvase LCQ53_RS05050 PF00239 Resolvase, N terminal domain LCQ53_RS05055 PF08448 PAS fold LCQ53_RS05055 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS05075 PF12857 TOBE-like domain LCQ53_RS05075 PF00005 ABC transporter LCQ53_RS05075 PF17850 CysA C-terminal regulatory domain LCQ53_RS05080 PF02525 Flavodoxin-like fold LCQ53_RS05085 PF00877 NlpC/P60 family LCQ53_RS05165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LCQ53_RS05170 PF00814 Glycoprotease family LCQ53_RS05175 PF12706 Beta-lactamase superfamily domain LCQ53_RS05180 PF00583 Acetyltransferase (GNAT) family LCQ53_RS05185 PF00814 Glycoprotease family LCQ53_RS05190 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LCQ53_RS05200 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LCQ53_RS05200 PF15714 Stage V sporulation protein T C-terminal, transcription factor LCQ53_RS05205 PF17760 UvrA interaction domain LCQ53_RS05205 PF17755 UvrA DNA-binding domain LCQ53_RS05210 PF12344 Ultra-violet resistance protein B LCQ53_RS05210 PF02151 UvrB/uvrC motif LCQ53_RS05210 PF04851 Type III restriction enzyme, res subunit LCQ53_RS05210 PF00271 Helicase conserved C-terminal domain LCQ53_RS05210 PF17757 UvrB interaction domain LCQ53_RS05215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS05215 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS05215 PF01627 Hpt domain LCQ53_RS05215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS05215 PF00672 HAMP domain LCQ53_RS05215 PF00072 Response regulator receiver domain LCQ53_RS05245 PF17820 PDZ domain LCQ53_RS05245 PF03572 Peptidase family S41 LCQ53_RS05245 PF01471 Putative peptidoglycan binding domain LCQ53_RS05260 PF01144 Coenzyme A transferase LCQ53_RS05265 PF01575 MaoC like domain LCQ53_RS05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS05270 PF03466 LysR substrate binding domain LCQ53_RS05275 PF01551 Peptidase family M23 LCQ53_RS05275 PF04225 Opacity-associated protein A LysM-like domain LCQ53_RS05280 PF18075 FtsX extracellular domain LCQ53_RS05280 PF02687 FtsX-like permease family LCQ53_RS05285 PF00005 ABC transporter LCQ53_RS05290 PF13556 PucR C-terminal helix-turn-helix domain LCQ53_RS05290 PF05651 Putative sugar diacid recognition LCQ53_RS05290 PF17853 GGDEF-like domain LCQ53_RS05295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LCQ53_RS05295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LCQ53_RS05310 PF17674 HHH domain LCQ53_RS05310 PF00575 S1 RNA binding domain LCQ53_RS05310 PF09371 Tex-like protein N-terminal domain LCQ53_RS05310 PF16921 Tex protein YqgF-like domain LCQ53_RS05315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LCQ53_RS05320 PF00696 Amino acid kinase family LCQ53_RS05320 PF13840 ACT domain LCQ53_RS05325 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase LCQ53_RS05325 PF01676 Metalloenzyme superfamily LCQ53_RS05330 PF01842 ACT domain LCQ53_RS05330 PF00742 Homoserine dehydrogenase LCQ53_RS05330 PF03447 Homoserine dehydrogenase, NAD binding domain LCQ53_RS05345 PF00472 RF-1 domain LCQ53_RS05345 PF03462 PCRF domain LCQ53_RS05350 PF07516 SecA Wing and Scaffold domain LCQ53_RS05350 PF01043 SecA preprotein cross-linking domain LCQ53_RS05350 PF02810 SEC-C motif LCQ53_RS05350 PF07517 SecA DEAD-like domain LCQ53_RS05355 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LCQ53_RS05355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LCQ53_RS05360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS05365 PF00085 Thioredoxin LCQ53_RS05370 PF00892 EamA-like transporter family LCQ53_RS05375 PF12833 Helix-turn-helix domain LCQ53_RS05375 PF02311 AraC-like ligand binding domain LCQ53_RS05380 PF01022 Bacterial regulatory protein, arsR family LCQ53_RS05390 PF00860 Permease family LCQ53_RS05395 PF12791 Anti-sigma factor N-terminus LCQ53_RS05395 PF00942 Cellulose binding domain LCQ53_RS05415 PF00005 ABC transporter LCQ53_RS05415 PF12848 ABC transporter LCQ53_RS05425 PF02308 MgtC family LCQ53_RS05430 PF12464 Maltose acetyltransferase LCQ53_RS05430 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS05435 PF00488 MutS domain V LCQ53_RS05435 PF01713 Smr domain LCQ53_RS05445 PF00367 phosphotransferase system, EIIB LCQ53_RS05445 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS05445 PF02378 Phosphotransferase system, EIIC LCQ53_RS05450 PF03123 CAT RNA binding domain LCQ53_RS05450 PF00874 PRD domain LCQ53_RS05455 PF02378 Phosphotransferase system, EIIC LCQ53_RS05455 PF00367 phosphotransferase system, EIIB LCQ53_RS05455 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS05460 PF13280 WYL domain LCQ53_RS05460 PF08279 HTH domain LCQ53_RS05470 PF00380 Ribosomal protein S9/S16 LCQ53_RS05475 PF00572 Ribosomal protein L13 LCQ53_RS05480 PF13597 Anaerobic ribonucleoside-triphosphate reductase LCQ53_RS05480 PF03477 ATP cone domain LCQ53_RS05485 PF06463 Molybdenum Cofactor Synthesis C LCQ53_RS05485 PF04055 Radical SAM superfamily LCQ53_RS05490 PF01416 tRNA pseudouridine synthase LCQ53_RS05495 PF02361 Cobalt transport protein LCQ53_RS05500 PF00005 ABC transporter LCQ53_RS05505 PF00005 ABC transporter LCQ53_RS05515 PF01196 Ribosomal protein L17 LCQ53_RS05520 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LCQ53_RS05520 PF01000 RNA polymerase Rpb3/RpoA insert domain LCQ53_RS05520 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LCQ53_RS05525 PF00163 Ribosomal protein S4/S9 N-terminal domain LCQ53_RS05525 PF01479 S4 domain LCQ53_RS05530 PF00411 Ribosomal protein S11 LCQ53_RS05535 PF00416 Ribosomal protein S13/S18 LCQ53_RS05540 PF00444 Ribosomal protein L36 LCQ53_RS05545 PF01176 Translation initiation factor 1A / IF-1 LCQ53_RS05550 PF00557 Metallopeptidase family M24 LCQ53_RS05555 PF05191 Adenylate kinase, active site lid LCQ53_RS05560 PF00344 SecY translocase LCQ53_RS05565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LCQ53_RS05570 PF00327 Ribosomal protein L30p/L7e LCQ53_RS05575 PF03719 Ribosomal protein S5, C-terminal domain LCQ53_RS05575 PF00333 Ribosomal protein S5, N-terminal domain LCQ53_RS05580 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LCQ53_RS05585 PF00347 Ribosomal protein L6 LCQ53_RS05590 PF00410 Ribosomal protein S8 LCQ53_RS05595 PF00253 Ribosomal protein S14p/S29e LCQ53_RS05600 PF00673 ribosomal L5P family C-terminus LCQ53_RS05600 PF00281 Ribosomal protein L5 LCQ53_RS05605 PF00467 KOW motif LCQ53_RS05605 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LCQ53_RS05610 PF00238 Ribosomal protein L14p/L23e LCQ53_RS05615 PF00366 Ribosomal protein S17 LCQ53_RS05620 PF00831 Ribosomal L29 protein LCQ53_RS05625 PF00252 Ribosomal protein L16p/L10e LCQ53_RS05630 PF00189 Ribosomal protein S3, C-terminal domain LCQ53_RS05630 PF07650 KH domain LCQ53_RS05635 PF00237 Ribosomal protein L22p/L17e LCQ53_RS05640 PF00203 Ribosomal protein S19 LCQ53_RS05645 PF00181 Ribosomal Proteins L2, RNA binding domain LCQ53_RS05645 PF03947 Ribosomal Proteins L2, C-terminal domain LCQ53_RS05650 PF00276 Ribosomal protein L23 LCQ53_RS05655 PF00573 Ribosomal protein L4/L1 family LCQ53_RS05660 PF00297 Ribosomal protein L3 LCQ53_RS05665 PF00338 Ribosomal protein S10p/S20e LCQ53_RS05680 PF00248 Aldo/keto reductase family LCQ53_RS05685 PF02734 DAK2 domain LCQ53_RS05690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_RS05695 PF02733 Dak1 domain LCQ53_RS05700 PF01380 SIS domain LCQ53_RS05705 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS05705 PF00455 DeoR C terminal sensor domain LCQ53_RS05720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LCQ53_RS05720 PF02785 Biotin carboxylase C-terminal domain LCQ53_RS05720 PF00289 Biotin carboxylase, N-terminal domain LCQ53_RS05725 PF07977 FabA-like domain LCQ53_RS05730 PF00364 Biotin-requiring enzyme LCQ53_RS05735 PF00109 Beta-ketoacyl synthase, N-terminal domain LCQ53_RS05735 PF02801 Beta-ketoacyl synthase, C-terminal domain LCQ53_RS05745 PF00698 Acyl transferase domain LCQ53_RS05750 PF00550 Phosphopantetheine attachment site LCQ53_RS05755 PF00107 Zinc-binding dehydrogenase LCQ53_RS05755 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS05760 PF00005 ABC transporter LCQ53_RS05780 PF02915 Rubrerythrin LCQ53_RS05800 PF00271 Helicase conserved C-terminal domain LCQ53_RS05800 PF00270 DEAD/DEAH box helicase LCQ53_RS05810 PF02001 Protein of unknown function DUF134 LCQ53_RS05815 PF03006 Haemolysin-III related LCQ53_RS05830 PF01541 GIY-YIG catalytic domain LCQ53_RS05840 PF08486 Stage II sporulation protein LCQ53_RS05860 PF08264 Anticodon-binding domain of tRNA LCQ53_RS05860 PF00133 tRNA synthetases class I (I, L, M and V) LCQ53_RS05870 PF00756 Putative esterase LCQ53_RS05875 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS05880 PF03609 PTS system sorbose-specific iic component LCQ53_RS05885 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS05885 PF03610 PTS system fructose IIA component LCQ53_RS05895 PF00874 PRD domain LCQ53_RS05895 PF00158 Sigma-54 interaction domain LCQ53_RS05900 PF00874 PRD domain LCQ53_RS05900 PF00158 Sigma-54 interaction domain LCQ53_RS05900 PF03610 PTS system fructose IIA component LCQ53_RS05910 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LCQ53_RS05910 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LCQ53_RS05910 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LCQ53_RS05915 PF01553 Acyltransferase LCQ53_RS05925 PF00294 pfkB family carbohydrate kinase LCQ53_RS05940 PF00849 RNA pseudouridylate synthase LCQ53_RS05945 PF00072 Response regulator receiver domain LCQ53_RS05945 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS05950 PF00989 PAS fold LCQ53_RS05950 PF16736 Single Cache-like LCQ53_RS05950 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS05955 PF04127 DNA / pantothenate metabolism flavoprotein LCQ53_RS05955 PF02441 Flavoprotein LCQ53_RS05960 PF02261 Aspartate decarboxylase LCQ53_RS05965 PF02569 Pantoate-beta-alanine ligase LCQ53_RS05970 PF02548 Ketopantoate hydroxymethyltransferase LCQ53_RS05995 PF04055 Radical SAM superfamily LCQ53_RS06000 PF01228 Glycine radical LCQ53_RS06000 PF02901 Pyruvate formate lyase-like LCQ53_RS06005 PF12848 ABC transporter LCQ53_RS06005 PF00005 ABC transporter LCQ53_RS06010 PF00455 DeoR C terminal sensor domain LCQ53_RS06010 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS06015 PF01380 SIS domain LCQ53_RS06015 PF01418 Helix-turn-helix domain, rpiR family LCQ53_RS06020 PF01380 SIS domain LCQ53_RS06020 PF01418 Helix-turn-helix domain, rpiR family LCQ53_RS06025 PF02378 Phosphotransferase system, EIIC LCQ53_RS06025 PF00367 phosphotransferase system, EIIB LCQ53_RS06025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS06030 PF02056 Family 4 glycosyl hydrolase LCQ53_RS06030 PF11975 Family 4 glycosyl hydrolase C-terminal domain LCQ53_RS06050 PF02378 Phosphotransferase system, EIIC LCQ53_RS06050 PF00367 phosphotransferase system, EIIB LCQ53_RS06055 PF00317 Ribonucleotide reductase, all-alpha domain LCQ53_RS06055 PF02867 Ribonucleotide reductase, barrel domain LCQ53_RS06055 PF03477 ATP cone domain LCQ53_RS06060 PF00268 Ribonucleotide reductase, small chain LCQ53_RS06065 PF06445 GyrI-like small molecule binding domain LCQ53_RS06065 PF12833 Helix-turn-helix domain LCQ53_RS06075 PF01522 Polysaccharide deacetylase LCQ53_RS06075 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain LCQ53_RS06080 PF01979 Amidohydrolase family LCQ53_RS06080 PF13382 Adenine deaminase C-terminal domain LCQ53_RS06085 PF00438 S-adenosylmethionine synthetase, N-terminal domain LCQ53_RS06085 PF02772 S-adenosylmethionine synthetase, central domain LCQ53_RS06085 PF02773 S-adenosylmethionine synthetase, C-terminal domain LCQ53_RS06095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LCQ53_RS06100 PF01202 Shikimate kinase LCQ53_RS06110 PF01230 HIT domain LCQ53_RS06115 PF02132 RecR protein LCQ53_RS06115 PF13662 Toprim domain LCQ53_RS06120 PF02575 YbaB/EbfC DNA-binding family LCQ53_RS06125 PF12169 DNA polymerase III subunits gamma and tau domain III LCQ53_RS06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS06130 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LCQ53_RS06130 PF17203 Single cache domain 3 LCQ53_RS06130 PF00989 PAS fold LCQ53_RS06135 PF01694 Rhomboid family LCQ53_RS06175 PF00437 Type II/IV secretion system protein LCQ53_RS06190 PF00290 Tryptophan synthase alpha chain LCQ53_RS06195 PF03611 PTS system sugar-specific permease component LCQ53_RS06205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS06215 PF06207 Protein of unknown function (DUF1002) LCQ53_RS06230 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LCQ53_RS06230 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LCQ53_RS06240 PF00005 ABC transporter LCQ53_RS06245 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS06250 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_RS06255 PF03180 NLPA lipoprotein LCQ53_RS06260 PF00730 HhH-GPD superfamily base excision DNA repair protein LCQ53_RS06260 PF14815 NUDIX domain LCQ53_RS06280 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS06295 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS06295 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS06300 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_RS06325 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS06325 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS06330 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_RS06340 PF04198 Putative sugar-binding domain LCQ53_RS06350 PF13280 WYL domain LCQ53_RS06350 PF08279 HTH domain LCQ53_RS06355 PF01965 DJ-1/PfpI family LCQ53_RS06360 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LCQ53_RS06360 PF13538 UvrD-like helicase C-terminal domain LCQ53_RS06360 PF14490 Helix-hairpin-helix containing domain LCQ53_RS06370 PF10672 S-adenosylmethionine-dependent methyltransferase LCQ53_RS06370 PF01170 Putative RNA methylase family UPF0020 LCQ53_RS06370 PF02926 THUMP domain LCQ53_RS06375 PF00128 Alpha amylase, catalytic domain LCQ53_RS06375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LCQ53_RS06380 PF11738 Protein of unknown function (DUF3298) LCQ53_RS06380 PF13739 Deacetylase PdaC LCQ53_RS06380 PF01522 Polysaccharide deacetylase LCQ53_RS06405 PF00672 HAMP domain LCQ53_RS06405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS06405 PF00072 Response regulator receiver domain LCQ53_RS06405 PF01627 Hpt domain LCQ53_RS06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS06405 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS06410 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS06410 PF01627 Hpt domain LCQ53_RS06410 PF00072 Response regulator receiver domain LCQ53_RS06410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS06410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS06410 PF00672 HAMP domain LCQ53_RS06420 PF01966 HD domain LCQ53_RS06425 PF04397 LytTr DNA-binding domain LCQ53_RS06425 PF00072 Response regulator receiver domain LCQ53_RS06450 PF04011 LemA family LCQ53_RS06460 PF02915 Rubrerythrin LCQ53_RS06475 PF00571 CBS domain LCQ53_RS06475 PF01595 Cyclin M transmembrane N-terminal domain LCQ53_RS06475 PF03471 Transporter associated domain LCQ53_RS06490 PF03061 Thioesterase superfamily LCQ53_RS06500 PF02515 CoA-transferase family III LCQ53_RS06505 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS06505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS06505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS06510 PF01012 Electron transfer flavoprotein domain LCQ53_RS06515 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_RS06515 PF01012 Electron transfer flavoprotein domain LCQ53_RS06520 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS06520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS06520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS06525 PF00583 Acetyltransferase (GNAT) family LCQ53_RS06530 PF06445 GyrI-like small molecule binding domain LCQ53_RS06530 PF13411 MerR HTH family regulatory protein LCQ53_RS06535 PF13411 MerR HTH family regulatory protein LCQ53_RS06540 PF01546 Peptidase family M20/M25/M40 LCQ53_RS06540 PF07687 Peptidase dimerisation domain LCQ53_RS06555 PF01979 Amidohydrolase family LCQ53_RS06560 PF01180 Dihydroorotate dehydrogenase LCQ53_RS06565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_RS06565 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS06570 PF06496 Protein of unknown function (DUF1097) LCQ53_RS06585 PF08402 TOBE domain LCQ53_RS06585 PF00005 ABC transporter LCQ53_RS06610 PF00294 pfkB family carbohydrate kinase LCQ53_RS06615 PF01081 KDPG and KHG aldolase LCQ53_RS06620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS06620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS06635 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LCQ53_RS06645 PF03480 Bacterial extracellular solute-binding protein, family 7 LCQ53_RS06650 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS06650 PF07729 FCD domain LCQ53_RS06660 PF01554 MatE LCQ53_RS06665 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS06670 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS06675 PF03609 PTS system sorbose-specific iic component LCQ53_RS06680 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS06695 PF01380 SIS domain LCQ53_RS06700 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS06700 PF07702 UTRA domain LCQ53_RS06720 PF03143 Elongation factor Tu C-terminal domain LCQ53_RS06720 PF03144 Elongation factor Tu domain 2 LCQ53_RS06720 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS06725 PF00679 Elongation factor G C-terminus LCQ53_RS06725 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS06725 PF14492 Elongation Factor G, domain II LCQ53_RS06725 PF03764 Elongation factor G, domain IV LCQ53_RS06725 PF03144 Elongation factor Tu domain 2 LCQ53_RS06730 PF00177 Ribosomal protein S7p/S5e LCQ53_RS06735 PF00164 Ribosomal protein S12/S23 LCQ53_RS06740 PF04983 RNA polymerase Rpb1, domain 3 LCQ53_RS06740 PF04998 RNA polymerase Rpb1, domain 5 LCQ53_RS06740 PF05000 RNA polymerase Rpb1, domain 4 LCQ53_RS06740 PF04997 RNA polymerase Rpb1, domain 1 LCQ53_RS06740 PF00623 RNA polymerase Rpb1, domain 2 LCQ53_RS06745 PF04560 RNA polymerase Rpb2, domain 7 LCQ53_RS06745 PF04563 RNA polymerase beta subunit LCQ53_RS06745 PF04561 RNA polymerase Rpb2, domain 2 LCQ53_RS06745 PF04565 RNA polymerase Rpb2, domain 3 LCQ53_RS06745 PF10385 RNA polymerase beta subunit external 1 domain LCQ53_RS06745 PF00562 RNA polymerase Rpb2, domain 6 LCQ53_RS06750 PF16320 Ribosomal protein L7/L12 dimerisation domain LCQ53_RS06750 PF00542 Ribosomal protein L7/L12 C-terminal domain LCQ53_RS06755 PF00466 Ribosomal protein L10 LCQ53_RS06765 PF00497 Bacterial extracellular solute-binding proteins, family 3 LCQ53_RS06770 PF00005 ABC transporter LCQ53_RS06775 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS06780 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS06785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LCQ53_RS06790 PF10425 C-terminus of bacterial fibrinogen-binding adhesin LCQ53_RS06790 PF17210 SdrD B-like domain LCQ53_RS06790 PF00746 LPXTG cell wall anchor motif LCQ53_RS06790 PF17961 Bacterial Ig domain LCQ53_RS06790 PF04650 YSIRK type signal peptide LCQ53_RS06795 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LCQ53_RS06800 PF04321 RmlD substrate binding domain LCQ53_RS06805 PF16363 GDP-mannose 4,6 dehydratase LCQ53_RS06810 PF00483 Nucleotidyl transferase LCQ53_RS06820 PF08241 Methyltransferase domain LCQ53_RS06830 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS06830 PF00155 Aminotransferase class I and II LCQ53_RS06910 PF00687 Ribosomal protein L1p/L10e family LCQ53_RS06915 PF00298 Ribosomal protein L11, RNA binding domain LCQ53_RS06915 PF03946 Ribosomal protein L11, N-terminal domain LCQ53_RS06920 PF00467 KOW motif LCQ53_RS06920 PF02357 Transcription termination factor nusG LCQ53_RS06930 PF00471 Ribosomal protein L33 LCQ53_RS06945 PF03477 ATP cone domain LCQ53_RS06960 PF03323 Bacillus/Clostridium GerA spore germination protein LCQ53_RS06965 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS06965 PF07729 FCD domain LCQ53_RS06970 PF08544 GHMP kinases C terminal LCQ53_RS06970 PF00288 GHMP kinases N terminal domain LCQ53_RS06975 PF08239 Bacterial SH3 domain LCQ53_RS06975 PF01476 LysM domain LCQ53_RS06975 PF00877 NlpC/P60 family LCQ53_RS06980 PF06257 Biofilm formation stimulator VEG LCQ53_RS06985 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_RS06985 PF01434 Peptidase family M41 LCQ53_RS06985 PF17862 AAA+ lid domain LCQ53_RS06985 PF06480 FtsH Extracellular LCQ53_RS06995 PF02885 Glycosyl transferase family, helical bundle domain LCQ53_RS06995 PF00591 Glycosyl transferase family, a/b domain LCQ53_RS06995 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LCQ53_RS07000 PF02915 Rubrerythrin LCQ53_RS07020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LCQ53_RS07020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LCQ53_RS07020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LCQ53_RS07020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LCQ53_RS07030 PF00692 dUTPase LCQ53_RS07035 PF00342 Phosphoglucose isomerase LCQ53_RS07040 PF01522 Polysaccharide deacetylase LCQ53_RS07050 PF01048 Phosphorylase superfamily LCQ53_RS07060 PF04101 Glycosyltransferase family 28 C-terminal domain LCQ53_RS07060 PF03033 Glycosyltransferase family 28 N-terminal domain LCQ53_RS07070 PF01965 DJ-1/PfpI family LCQ53_RS07070 PF12833 Helix-turn-helix domain LCQ53_RS07080 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS07085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS07085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS07090 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS07095 PF07739 TipAS antibiotic-recognition domain LCQ53_RS07095 PF13411 MerR HTH family regulatory protein LCQ53_RS07100 PF02311 AraC-like ligand binding domain LCQ53_RS07100 PF12833 Helix-turn-helix domain LCQ53_RS07115 PF13344 Haloacid dehalogenase-like hydrolase LCQ53_RS07120 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS07125 PF13685 Iron-containing alcohol dehydrogenase LCQ53_RS07130 PF03611 PTS system sugar-specific permease component LCQ53_RS07140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS07140 PF02378 Phosphotransferase system, EIIC LCQ53_RS07140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS07145 PF08279 HTH domain LCQ53_RS07145 PF00874 PRD domain LCQ53_RS07145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS07145 PF05043 Mga helix-turn-helix domain LCQ53_RS07150 PF00294 pfkB family carbohydrate kinase LCQ53_RS07155 PF00455 DeoR C terminal sensor domain LCQ53_RS07155 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS07165 PF00005 ABC transporter LCQ53_RS07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS07185 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS07185 PF00072 Response regulator receiver domain LCQ53_RS07190 PF02403 Seryl-tRNA synthetase N-terminal domain LCQ53_RS07190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_RS07200 PF17762 HTH domain found in ParB protein LCQ53_RS07200 PF02195 ParB-like nuclease domain LCQ53_RS07205 PF13614 AAA domain LCQ53_RS07210 PF03485 Arginyl tRNA synthetase N terminal domain LCQ53_RS07210 PF00750 tRNA synthetases class I (R) LCQ53_RS07210 PF05746 DALR anticodon binding domain LCQ53_RS07225 PF02527 rRNA small subunit methyltransferase G LCQ53_RS07230 PF13932 GidA associated domain LCQ53_RS07230 PF01134 Glucose inhibited division protein A LCQ53_RS07235 PF12631 MnmE helical domain LCQ53_RS07235 PF01926 50S ribosome-binding GTPase LCQ53_RS07235 PF10396 GTP-binding protein TrmE N-terminus LCQ53_RS07240 PF14804 Jag N-terminus LCQ53_RS07240 PF01424 R3H domain LCQ53_RS07245 PF02096 60Kd inner membrane protein LCQ53_RS07250 PF01809 Putative membrane protein insertion efficiency factor LCQ53_RS07255 PF00825 Ribonuclease P LCQ53_RS07260 PF00468 Ribosomal protein L34 LCQ53_RS07265 PF08299 Bacterial dnaA protein helix-turn-helix LCQ53_RS07265 PF11638 DnaA N-terminal domain LCQ53_RS07265 PF00308 Bacterial dnaA protein LCQ53_RS07270 PF02768 DNA polymerase III beta subunit, C-terminal domain LCQ53_RS07270 PF02767 DNA polymerase III beta subunit, central domain LCQ53_RS07270 PF00712 DNA polymerase III beta subunit, N-terminal domain LCQ53_RS07280 PF02463 RecF/RecN/SMC N terminal domain LCQ53_RS07285 PF00986 DNA gyrase B subunit, carboxyl terminus LCQ53_RS07285 PF00204 DNA gyrase B LCQ53_RS07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS07285 PF01751 Toprim domain LCQ53_RS07290 PF00521 DNA gyrase/topoisomerase IV, subunit A LCQ53_RS07290 PF03989 DNA gyrase C-terminal domain, beta-propeller LCQ53_RS07295 PF05681 Fumarate hydratase (Fumerase) LCQ53_RS07325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_RS07325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_RS07380 PF01554 MatE LCQ53_RS07385 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain LCQ53_RS07390 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_RS07395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS07400 PF00874 PRD domain LCQ53_RS07400 PF05043 Mga helix-turn-helix domain LCQ53_RS07400 PF08279 HTH domain LCQ53_RS07400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS07400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS07405 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_RS07405 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_RS07410 PF02378 Phosphotransferase system, EIIC LCQ53_RS07410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS07415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS07425 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS07430 PF01266 FAD dependent oxidoreductase LCQ53_RS07435 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS07435 PF13192 Thioredoxin domain LCQ53_RS07445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LCQ53_RS07445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LCQ53_RS07455 PF04198 Putative sugar-binding domain LCQ53_RS07465 PF01336 OB-fold nucleic acid binding domain LCQ53_RS07465 PF00152 tRNA synthetases class II (D, K and N) LCQ53_RS07475 PF09424 Yqey-like protein LCQ53_RS07485 PF01645 Conserved region in glutamate synthase LCQ53_RS07490 PF01026 TatD related DNase LCQ53_RS07495 PF00398 Ribosomal RNA adenine dimethylase LCQ53_RS07505 PF14437 MafB19-like deaminase LCQ53_RS07510 PF01544 CorA-like Mg2+ transporter protein LCQ53_RS07535 PF03611 PTS system sugar-specific permease component LCQ53_RS07540 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS07545 PF00107 Zinc-binding dehydrogenase LCQ53_RS07545 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS07560 PF04607 Region found in RelA / SpoT proteins LCQ53_RS07590 PF13514 AAA domain LCQ53_RS07595 PF00912 Transglycosylase LCQ53_RS07595 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS07600 PF14572 Phosphoribosyl synthetase-associated domain LCQ53_RS07600 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LCQ53_RS07615 PF02875 Mur ligase family, glutamate ligase domain LCQ53_RS07615 PF08245 Mur ligase middle domain LCQ53_RS07615 PF01225 Mur ligase family, catalytic domain LCQ53_RS07620 PF04026 SpoVG LCQ53_RS07665 PF06866 Protein of unknown function (DUF1256) LCQ53_RS07730 PF01276 Orn/Lys/Arg decarboxylase, major domain LCQ53_RS07730 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LCQ53_RS07735 PF02223 Thymidylate kinase LCQ53_RS07740 PF09115 DNA polymerase III, delta subunit, C terminal LCQ53_RS07745 PF04468 PSP1 C-terminal conserved region LCQ53_RS07750 PF05175 Methyltransferase small domain LCQ53_RS07755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS07760 PF18277 AbrB C-terminal domain LCQ53_RS07760 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LCQ53_RS07780 PF01047 MarR family LCQ53_RS07785 PF01293 Phosphoenolpyruvate carboxykinase LCQ53_RS07795 PF01588 Putative tRNA binding domain LCQ53_RS07795 PF09334 tRNA synthetases class I (M) LCQ53_RS07805 PF03610 PTS system fructose IIA component LCQ53_RS07805 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS07810 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS07820 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS07825 PF00107 Zinc-binding dehydrogenase LCQ53_RS07825 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS07840 PF01497 Periplasmic binding protein LCQ53_RS07845 PF01032 FecCD transport family LCQ53_RS07850 PF01032 FecCD transport family LCQ53_RS07855 PF00005 ABC transporter LCQ53_RS07885 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS07885 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS07890 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_RS07900 PF00107 Zinc-binding dehydrogenase LCQ53_RS07900 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS07905 PF04198 Putative sugar-binding domain LCQ53_RS07905 PF00325 Bacterial regulatory proteins, crp family LCQ53_RS07915 PF02441 Flavoprotein LCQ53_RS07920 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LCQ53_RS07925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS07925 PF03466 LysR substrate binding domain LCQ53_RS07935 PF01713 Smr domain LCQ53_RS07935 PF00488 MutS domain V LCQ53_RS07940 PF01966 HD domain LCQ53_RS07945 PF05958 tRNA (Uracil-5-)-methyltransferase LCQ53_RS07945 PF01938 TRAM domain LCQ53_RS07990 PF01872 RibD C-terminal domain LCQ53_RS07995 PF01209 ubiE/COQ5 methyltransferase family LCQ53_RS08010 PF00730 HhH-GPD superfamily base excision DNA repair protein LCQ53_RS08010 PF00633 Helix-hairpin-helix motif LCQ53_RS08015 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS08015 PF17158 Membrane-associated sensor, integral membrane domain LCQ53_RS08040 PF00239 Resolvase, N terminal domain LCQ53_RS08040 PF02796 Helix-turn-helix domain of resolvase LCQ53_RS08055 PF04237 YjbR LCQ53_RS08065 PF00293 NUDIX domain LCQ53_RS08070 PF00578 AhpC/TSA family LCQ53_RS08075 PF02683 Cytochrome C biogenesis protein transmembrane region LCQ53_RS08080 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS08080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LCQ53_RS08100 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS08110 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS08120 PF03883 Peroxide stress protein YaaA LCQ53_RS08145 PF00156 Phosphoribosyl transferase domain LCQ53_RS08150 PF00117 Glutamine amidotransferase class-I LCQ53_RS08150 PF00958 GMP synthase C terminal domain LCQ53_RS08165 PF00589 Phage integrase family LCQ53_RS08165 PF02899 Phage integrase, N-terminal SAM-like domain LCQ53_RS08175 PF18073 Rubredoxin metal binding domain LCQ53_RS08190 PF01076 Plasmid recombination enzyme LCQ53_RS08210 PF00145 C-5 cytosine-specific DNA methylase LCQ53_RS08215 PF03852 DNA mismatch endonuclease Vsr LCQ53_RS08220 PF06470 SMC proteins Flexible Hinge Domain LCQ53_RS08220 PF02463 RecF/RecN/SMC N terminal domain LCQ53_RS08230 PF09383 NIL domain LCQ53_RS08230 PF00005 ABC transporter LCQ53_RS08235 PF04434 SWIM zinc finger LCQ53_RS08235 PF00271 Helicase conserved C-terminal domain LCQ53_RS08235 PF00176 SNF2 family N-terminal domain LCQ53_RS08245 PF00156 Phosphoribosyl transferase domain LCQ53_RS08255 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS08260 PF09084 NMT1/THI5 like LCQ53_RS08265 PF00005 ABC transporter LCQ53_RS08270 PF00381 PTS HPr component phosphorylation site LCQ53_RS08280 PF00391 PEP-utilising enzyme, mobile domain LCQ53_RS08280 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_RS08280 PF05524 PEP-utilising enzyme, N-terminal LCQ53_RS08300 PF03611 PTS system sugar-specific permease component LCQ53_RS08305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS08305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS08305 PF01842 ACT domain LCQ53_RS08310 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS08315 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS08315 PF00107 Zinc-binding dehydrogenase LCQ53_RS08320 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS08325 PF01554 MatE LCQ53_RS08340 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS08345 PF00107 Zinc-binding dehydrogenase LCQ53_RS08345 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS08350 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS08360 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS08370 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS08370 PF07702 UTRA domain LCQ53_RS08385 PF04199 Putative cyclase LCQ53_RS08390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LCQ53_RS08390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LCQ53_RS08400 PF00230 Major intrinsic protein LCQ53_RS08405 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS08405 PF07729 FCD domain LCQ53_RS08420 PF03705 CheR methyltransferase, all-alpha domain LCQ53_RS08420 PF01739 CheR methyltransferase, SAM binding domain LCQ53_RS08425 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS08425 PF14492 Elongation Factor G, domain II LCQ53_RS08425 PF03764 Elongation factor G, domain IV LCQ53_RS08425 PF00679 Elongation factor G C-terminus LCQ53_RS08440 PF04055 Radical SAM superfamily LCQ53_RS08440 PF06463 Molybdenum Cofactor Synthesis C LCQ53_RS08445 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS08445 PF18665 Tetracyclin repressor-like, C-terminal domain LCQ53_RS08470 PF00270 DEAD/DEAH box helicase LCQ53_RS08470 PF09382 RQC domain LCQ53_RS08470 PF00271 Helicase conserved C-terminal domain LCQ53_RS08470 PF00570 HRDC domain LCQ53_RS08470 PF16124 RecQ zinc-binding LCQ53_RS08475 PF01327 Polypeptide deformylase LCQ53_RS08480 PF13472 GDSL-like Lipase/Acylhydrolase family LCQ53_RS08485 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS08485 PF07729 FCD domain LCQ53_RS08490 PF00920 Dehydratase family LCQ53_RS08495 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS08495 PF00107 Zinc-binding dehydrogenase LCQ53_RS08500 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS08500 PF00107 Zinc-binding dehydrogenase LCQ53_RS08505 PF00155 Aminotransferase class I and II LCQ53_RS08510 PF13520 Amino acid permease LCQ53_RS08525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS08525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS08530 PF01081 KDPG and KHG aldolase LCQ53_RS08535 PF00294 pfkB family carbohydrate kinase LCQ53_RS08540 PF00664 ABC transporter transmembrane region LCQ53_RS08540 PF00005 ABC transporter LCQ53_RS08545 PF01381 Helix-turn-helix LCQ53_RS08555 PF01554 MatE LCQ53_RS08575 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS08575 PF00563 EAL domain LCQ53_RS08575 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS08575 PF13188 PAS domain LCQ53_RS08590 PF01554 MatE LCQ53_RS08595 PF18152 DAHP synthase ferredoxin-like domain LCQ53_RS08595 PF00793 DAHP synthetase I family LCQ53_RS08600 PF01195 Peptidyl-tRNA hydrolase LCQ53_RS08605 PF02559 CarD-like/TRCF domain LCQ53_RS08605 PF00270 DEAD/DEAH box helicase LCQ53_RS08605 PF00271 Helicase conserved C-terminal domain LCQ53_RS08605 PF03461 TRCF domain LCQ53_RS08605 PF17757 UvrB interaction domain LCQ53_RS08620 PF01250 Ribosomal protein S6 LCQ53_RS08625 PF00436 Single-strand binding protein family LCQ53_RS08630 PF01084 Ribosomal protein S18 LCQ53_RS08635 PF02272 DHHA1 domain LCQ53_RS08635 PF01368 DHH family LCQ53_RS08640 PF03948 Ribosomal protein L9, C-terminal domain LCQ53_RS08640 PF01281 Ribosomal protein L9, N-terminal domain LCQ53_RS08645 PF03796 DnaB-like helicase C terminal domain LCQ53_RS08645 PF00772 DnaB-like helicase N terminal domain LCQ53_RS08655 PF12838 4Fe-4S dicluster domain LCQ53_RS08670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS08675 PF03611 PTS system sugar-specific permease component LCQ53_RS08680 PF02733 Dak1 domain LCQ53_RS08690 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS08695 PF02733 Dak1 domain LCQ53_RS08715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS08715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS08730 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_RS08735 PF01235 Sodium:alanine symporter family LCQ53_RS08740 PF01300 Telomere recombination LCQ53_RS08740 PF03481 Putative GTP-binding controlling metal-binding LCQ53_RS08760 PF00119 ATP synthase A chain LCQ53_RS08765 PF00137 ATP synthase subunit C LCQ53_RS08770 PF00430 ATP synthase B/B' CF(0) LCQ53_RS08775 PF00213 ATP synthase delta (OSCP) subunit LCQ53_RS08780 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_RS08780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS08780 PF00306 ATP synthase alpha/beta chain, C terminal domain LCQ53_RS08785 PF00231 ATP synthase LCQ53_RS08790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS08790 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_RS08795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LCQ53_RS08795 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LCQ53_RS08805 PF00563 EAL domain LCQ53_RS08805 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS08805 PF13426 PAS domain LCQ53_RS08810 PF01928 CYTH domain LCQ53_RS08815 PF02390 Putative methyltransferase LCQ53_RS08820 PF00085 Thioredoxin LCQ53_RS08825 PF16326 ABC transporter C-terminal domain LCQ53_RS08825 PF12848 ABC transporter LCQ53_RS08825 PF00005 ABC transporter LCQ53_RS08835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS08835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS08840 PF00672 HAMP domain LCQ53_RS08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS08840 PF06580 Histidine kinase LCQ53_RS08840 PF02743 Cache domain LCQ53_RS08845 PF00072 Response regulator receiver domain LCQ53_RS08845 PF12833 Helix-turn-helix domain LCQ53_RS08850 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS08875 PF01594 AI-2E family transporter LCQ53_RS08880 PF00795 Carbon-nitrogen hydrolase LCQ53_RS08885 PF00072 Response regulator receiver domain LCQ53_RS08885 PF04397 LytTr DNA-binding domain LCQ53_RS08890 PF00005 ABC transporter LCQ53_RS08900 PF01894 Uncharacterised protein family UPF0047 LCQ53_RS08905 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) LCQ53_RS08905 PF00746 LPXTG cell wall anchor motif LCQ53_RS08905 PF12354 Bacterial adhesion/invasion protein N terminal LCQ53_RS08905 PF12799 Leucine Rich repeats (2 copies) LCQ53_RS08905 PF08191 LRR adjacent LCQ53_RS08910 PF04203 Sortase domain LCQ53_RS08930 PF17783 CvfB-like winged helix domain LCQ53_RS08930 PF13509 S1 domain LCQ53_RS08935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS08935 PF03819 MazG nucleotide pyrophosphohydrolase domain LCQ53_RS08940 PF00216 Bacterial DNA-binding protein LCQ53_RS08945 PF01479 S4 domain LCQ53_RS08950 PF07873 YabP family LCQ53_RS08965 PF05043 Mga helix-turn-helix domain LCQ53_RS08965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS08965 PF00874 PRD domain LCQ53_RS08965 PF08279 HTH domain LCQ53_RS08970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS08980 PF03611 PTS system sugar-specific permease component LCQ53_RS08990 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS08995 PF01791 DeoC/LacD family aldolase LCQ53_RS09000 PF00294 pfkB family carbohydrate kinase LCQ53_RS09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS09030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LCQ53_RS09035 PF00027 Cyclic nucleotide-binding domain LCQ53_RS09035 PF00325 Bacterial regulatory proteins, crp family LCQ53_RS09045 PF11734 TilS substrate C-terminal domain LCQ53_RS09045 PF01171 PP-loop family LCQ53_RS09050 PF00156 Phosphoribosyl transferase domain LCQ53_RS09055 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_RS09055 PF17862 AAA+ lid domain LCQ53_RS09055 PF01434 Peptidase family M41 LCQ53_RS09060 PF00375 Sodium:dicarboxylate symporter family LCQ53_RS09075 PF01554 MatE LCQ53_RS09095 PF00313 'Cold-shock' DNA-binding domain LCQ53_RS09105 PF00437 Type II/IV secretion system protein LCQ53_RS09190 PF00390 Malic enzyme, N-terminal domain LCQ53_RS09190 PF03949 Malic enzyme, NAD binding domain LCQ53_RS09200 PF01554 MatE LCQ53_RS09215 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS09215 PF18665 Tetracyclin repressor-like, C-terminal domain LCQ53_RS09220 PF02446 4-alpha-glucanotransferase LCQ53_RS09225 PF00633 Helix-hairpin-helix motif LCQ53_RS09225 PF00730 HhH-GPD superfamily base excision DNA repair protein LCQ53_RS09230 PF07733 Bacterial DNA polymerase III alpha NTPase domain LCQ53_RS09230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LCQ53_RS09230 PF14579 Helix-hairpin-helix motif LCQ53_RS09230 PF02811 PHP domain LCQ53_RS09230 PF00929 Exonuclease LCQ53_RS09230 PF11490 DNA polymerase III polC-type N-terminus II LCQ53_RS09235 PF04294 VanW like protein LCQ53_RS09240 PF00586 AIR synthase related protein, N-terminal domain LCQ53_RS09240 PF02769 AIR synthase related protein, C-terminal domain LCQ53_RS09240 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LCQ53_RS09245 PF01037 Lrp/AsnC ligand binding domain LCQ53_RS09250 PF00155 Aminotransferase class I and II LCQ53_RS09255 PF00588 SpoU rRNA Methylase family LCQ53_RS09275 PF03129 Anticodon binding domain LCQ53_RS09275 PF09180 Prolyl-tRNA synthetase, C-terminal LCQ53_RS09275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_RS09280 PF12627 Probable RNA and SrmB- binding site of polymerase A LCQ53_RS09280 PF13735 tRNA nucleotidyltransferase domain 2 putative LCQ53_RS09280 PF01743 Poly A polymerase head domain LCQ53_RS09290 PF01820 D-ala D-ala ligase N-terminus LCQ53_RS09290 PF07478 D-ala D-ala ligase C-terminus LCQ53_RS09295 PF01177 Asp/Glu/Hydantoin racemase LCQ53_RS09305 PF01569 PAP2 superfamily LCQ53_RS09325 PF00563 EAL domain LCQ53_RS09325 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS09325 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS09330 PF01053 Cys/Met metabolism PLP-dependent enzyme LCQ53_RS09335 PF02219 Methylenetetrahydrofolate reductase LCQ53_RS09345 PF02574 Homocysteine S-methyltransferase LCQ53_RS09345 PF02310 B12 binding domain LCQ53_RS09345 PF02607 B12 binding domain LCQ53_RS09345 PF00809 Pterin binding enzyme LCQ53_RS09345 PF02965 Vitamin B12 dependent methionine synthase, activation domain LCQ53_RS09350 PF03591 AzlC protein LCQ53_RS09355 PF05437 Branched-chain amino acid transport protein (AzlD) LCQ53_RS09360 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS09365 PF02920 DNA binding domain of tn916 integrase LCQ53_RS09365 PF00589 Phage integrase family LCQ53_RS09370 PF09035 Excisionase from transposon Tn916 LCQ53_RS09405 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS09415 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LCQ53_RS09415 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LCQ53_RS09445 PF01791 DeoC/LacD family aldolase LCQ53_RS09460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS09465 PF03611 PTS system sugar-specific permease component LCQ53_RS09470 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS09480 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS09480 PF00107 Zinc-binding dehydrogenase LCQ53_RS09485 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_RS09490 PF01380 SIS domain LCQ53_RS09495 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS09500 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS09500 PF00107 Zinc-binding dehydrogenase LCQ53_RS09505 PF02698 DUF218 domain LCQ53_RS09510 PF01842 ACT domain LCQ53_RS09510 PF03315 Serine dehydratase beta chain LCQ53_RS09515 PF03313 Serine dehydratase alpha chain LCQ53_RS09520 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS09525 PF01380 SIS domain LCQ53_RS09525 PF01418 Helix-turn-helix domain, rpiR family LCQ53_RS09530 PF00294 pfkB family carbohydrate kinase LCQ53_RS09535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS09535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS09540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS09540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS09545 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS09545 PF00455 DeoR C terminal sensor domain LCQ53_RS09555 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS09555 PF00107 Zinc-binding dehydrogenase LCQ53_RS09565 PF00149 Calcineurin-like phosphoesterase LCQ53_RS09570 PF01638 HxlR-like helix-turn-helix LCQ53_RS09580 PF01661 Macro domain LCQ53_RS09605 PF00892 EamA-like transporter family LCQ53_RS09610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LCQ53_RS09610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LCQ53_RS09615 PF00731 AIR carboxylase LCQ53_RS09620 PF01969 Protein of unknown function DUF111 LCQ53_RS09625 PF02540 NAD synthase LCQ53_RS09630 PF01891 Cobalt uptake substrate-specific transmembrane region LCQ53_RS09630 PF13190 PDGLE domain LCQ53_RS09640 PF00005 ABC transporter LCQ53_RS09645 PF13411 MerR HTH family regulatory protein LCQ53_RS09650 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS09650 PF00563 EAL domain LCQ53_RS09650 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS09655 PF01336 OB-fold nucleic acid binding domain LCQ53_RS09655 PF00152 tRNA synthetases class II (D, K and N) LCQ53_RS09655 PF02938 GAD domain LCQ53_RS09670 PF02779 Transketolase, pyrimidine binding domain LCQ53_RS09670 PF00456 Transketolase, thiamine diphosphate binding domain LCQ53_RS09670 PF02780 Transketolase, C-terminal domain LCQ53_RS09675 PF02779 Transketolase, pyrimidine binding domain LCQ53_RS09675 PF02780 Transketolase, C-terminal domain LCQ53_RS09675 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LCQ53_RS09680 PF00107 Zinc-binding dehydrogenase LCQ53_RS09680 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS09685 PF00874 PRD domain LCQ53_RS09685 PF03610 PTS system fructose IIA component LCQ53_RS09685 PF00158 Sigma-54 interaction domain LCQ53_RS09700 PF12833 Helix-turn-helix domain LCQ53_RS09720 PF01144 Coenzyme A transferase LCQ53_RS09725 PF01144 Coenzyme A transferase LCQ53_RS09730 PF00378 Enoyl-CoA hydratase/isomerase LCQ53_RS09755 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS09760 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS09765 PF03609 PTS system sorbose-specific iic component LCQ53_RS09770 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS09775 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS09780 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS09780 PF00107 Zinc-binding dehydrogenase LCQ53_RS09785 PF13936 Helix-turn-helix domain LCQ53_RS09785 PF04198 Putative sugar-binding domain LCQ53_RS09820 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system LCQ53_RS09825 PF00654 Voltage gated chloride channel LCQ53_RS09830 PF03167 Uracil DNA glycosylase superfamily LCQ53_RS09845 PF00768 D-alanyl-D-alanine carboxypeptidase LCQ53_RS09845 PF07943 Penicillin-binding protein 5, C-terminal domain LCQ53_RS09860 PF00781 Diacylglycerol kinase catalytic domain LCQ53_RS09870 PF00360 Phytochrome region LCQ53_RS09870 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS09870 PF01590 GAF domain LCQ53_RS09870 PF00563 EAL domain LCQ53_RS09880 PF00309 Sigma-54 factor, Activator interacting domain (AID) LCQ53_RS09880 PF04963 Sigma-54 factor, core binding domain LCQ53_RS09880 PF04552 Sigma-54, DNA binding domain LCQ53_RS09885 PF03610 PTS system fructose IIA component LCQ53_RS09890 PF00874 PRD domain LCQ53_RS09890 PF00158 Sigma-54 interaction domain LCQ53_RS09890 PF03610 PTS system fructose IIA component LCQ53_RS09895 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS09905 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS09905 PF00107 Zinc-binding dehydrogenase LCQ53_RS09910 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS09915 PF03609 PTS system sorbose-specific iic component LCQ53_RS09925 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_RS09925 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_RS09930 PF00248 Aldo/keto reductase family LCQ53_RS09950 PF02901 Pyruvate formate lyase-like LCQ53_RS09950 PF01228 Glycine radical LCQ53_RS09955 PF13187 4Fe-4S dicluster domain LCQ53_RS09955 PF04055 Radical SAM superfamily LCQ53_RS09960 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_RS09965 PF03610 PTS system fructose IIA component LCQ53_RS09965 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS09970 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS09975 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS09980 PF04198 Putative sugar-binding domain LCQ53_RS09985 PF07859 alpha/beta hydrolase fold LCQ53_RS09990 PF00591 Glycosyl transferase family, a/b domain LCQ53_RS09990 PF02885 Glycosyl transferase family, helical bundle domain LCQ53_RS09990 PF00117 Glutamine amidotransferase class-I LCQ53_RS09995 PF00425 chorismate binding enzyme LCQ53_RS09995 PF04715 Anthranilate synthase component I, N terminal region LCQ53_RS10000 PF01063 Amino-transferase class IV LCQ53_RS10005 PF00309 Sigma-54 factor, Activator interacting domain (AID) LCQ53_RS10005 PF04552 Sigma-54, DNA binding domain LCQ53_RS10005 PF04963 Sigma-54 factor, core binding domain LCQ53_RS10010 PF13538 UvrD-like helicase C-terminal domain LCQ53_RS10015 PF12833 Helix-turn-helix domain LCQ53_RS10030 PF01235 Sodium:alanine symporter family LCQ53_RS10055 PF00909 Ammonium Transporter Family LCQ53_RS10060 PF00543 Nitrogen regulatory protein P-II LCQ53_RS10065 PF00892 EamA-like transporter family LCQ53_RS10075 PF02368 Bacterial Ig-like domain (group 2) LCQ53_RS10080 PF02082 Transcriptional regulator LCQ53_RS10105 PF02926 THUMP domain LCQ53_RS10105 PF01170 Putative RNA methylase family UPF0020 LCQ53_RS10110 PF01725 Ham1 family LCQ53_RS10120 PF05958 tRNA (Uracil-5-)-methyltransferase LCQ53_RS10140 PF10706 Aminoglycoside-2''-adenylyltransferase LCQ53_RS10145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LCQ53_RS10150 PF12697 Alpha/beta hydrolase family LCQ53_RS10165 PF00271 Helicase conserved C-terminal domain LCQ53_RS10165 PF00270 DEAD/DEAH box helicase LCQ53_RS10165 PF03880 DbpA RNA binding domain LCQ53_RS10175 PF03466 LysR substrate binding domain LCQ53_RS10175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS10180 PF00860 Permease family LCQ53_RS10185 PF01979 Amidohydrolase family LCQ53_RS10185 PF13382 Adenine deaminase C-terminal domain LCQ53_RS10190 PF02595 Glycerate kinase family LCQ53_RS10195 PF08003 Protein of unknown function (DUF1698) LCQ53_RS10205 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS10205 PF00072 Response regulator receiver domain LCQ53_RS10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS10205 PF01627 Hpt domain LCQ53_RS10210 PF08543 Phosphomethylpyrimidine kinase LCQ53_RS10225 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS10230 PF00571 CBS domain LCQ53_RS10230 PF00005 ABC transporter LCQ53_RS10260 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS10270 PF07702 UTRA domain LCQ53_RS10270 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS10275 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LCQ53_RS10285 PF03608 PTS system enzyme II sorbitol-specific factor LCQ53_RS10290 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS10290 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS10295 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LCQ53_RS10295 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LCQ53_RS10305 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS10305 PF07702 UTRA domain LCQ53_RS10325 PF02673 Bacitracin resistance protein BacA LCQ53_RS10345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS10345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LCQ53_RS10350 PF13382 Adenine deaminase C-terminal domain LCQ53_RS10350 PF01979 Amidohydrolase family LCQ53_RS10355 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS10355 PF13823 Alcohol dehydrogenase GroES-associated LCQ53_RS10355 PF00107 Zinc-binding dehydrogenase LCQ53_RS10370 PF12706 Beta-lactamase superfamily domain LCQ53_RS10380 PF16916 Dimerisation domain of Zinc Transporter LCQ53_RS10380 PF01545 Cation efflux family LCQ53_RS10385 PF00664 ABC transporter transmembrane region LCQ53_RS10385 PF00005 ABC transporter LCQ53_RS10390 PF00005 ABC transporter LCQ53_RS10390 PF00664 ABC transporter transmembrane region LCQ53_RS10410 PF00072 Response regulator receiver domain LCQ53_RS10415 PF01871 AMMECR1 LCQ53_RS10415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LCQ53_RS10420 PF04055 Radical SAM superfamily LCQ53_RS10435 PF13426 PAS domain LCQ53_RS10435 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS10435 PF00563 EAL domain LCQ53_RS10440 PF05223 NTF2-like N-terminal transpeptidase domain LCQ53_RS10440 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS10440 PF03717 Penicillin-binding Protein dimerisation domain LCQ53_RS10445 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS10445 PF05569 BlaR1 peptidase M56 LCQ53_RS10450 PF03965 Penicillinase repressor LCQ53_RS10460 PF00285 Citrate synthase, C-terminal domain LCQ53_RS10475 PF02595 Glycerate kinase family LCQ53_RS10480 PF00561 alpha/beta hydrolase fold LCQ53_RS10485 PF03447 Homoserine dehydrogenase, NAD binding domain LCQ53_RS10485 PF00742 Homoserine dehydrogenase LCQ53_RS10485 PF01842 ACT domain LCQ53_RS10490 PF00892 EamA-like transporter family LCQ53_RS10495 PF03814 Potassium-transporting ATPase A subunit LCQ53_RS10505 PF02669 K+-transporting ATPase, c chain LCQ53_RS10510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS10510 PF13493 Domain of unknown function (DUF4118) LCQ53_RS10510 PF02702 Osmosensitive K+ channel His kinase sensor domain LCQ53_RS10510 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS10515 PF00072 Response regulator receiver domain LCQ53_RS10515 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS10520 PF13493 Domain of unknown function (DUF4118) LCQ53_RS10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS10520 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS10520 PF02702 Osmosensitive K+ channel His kinase sensor domain LCQ53_RS10525 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS10525 PF00072 Response regulator receiver domain LCQ53_RS10535 PF01022 Bacterial regulatory protein, arsR family LCQ53_RS10550 PF00248 Aldo/keto reductase family LCQ53_RS10560 PF00258 Flavodoxin LCQ53_RS10570 PF00005 ABC transporter LCQ53_RS10580 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS10580 PF00072 Response regulator receiver domain LCQ53_RS10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS10590 PF00183 Hsp90 protein LCQ53_RS10595 PF01266 FAD dependent oxidoreductase LCQ53_RS10595 PF00355 Rieske [2Fe-2S] domain LCQ53_RS10610 PF03190 Protein of unknown function, DUF255 LCQ53_RS10620 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS10620 PF00072 Response regulator receiver domain LCQ53_RS10625 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS10630 PF00933 Glycosyl hydrolase family 3 N terminal domain LCQ53_RS10630 PF01915 Glycosyl hydrolase family 3 C-terminal domain LCQ53_RS10635 PF01259 SAICAR synthetase LCQ53_RS10640 PF00156 Phosphoribosyl transferase domain LCQ53_RS10645 PF10397 Adenylosuccinate lyase C-terminus LCQ53_RS10645 PF00206 Lyase LCQ53_RS10650 PF00781 Diacylglycerol kinase catalytic domain LCQ53_RS10655 PF07969 Amidohydrolase family LCQ53_RS10660 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS10665 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_RS10670 PF00456 Transketolase, thiamine diphosphate binding domain LCQ53_RS10675 PF02779 Transketolase, pyrimidine binding domain LCQ53_RS10675 PF02780 Transketolase, C-terminal domain LCQ53_RS10680 PF00294 pfkB family carbohydrate kinase LCQ53_RS10690 PF01380 SIS domain LCQ53_RS10695 PF00884 Sulfatase LCQ53_RS10700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LCQ53_RS10700 PF05698 Bacterial trigger factor protein (TF) C-terminus LCQ53_RS10700 PF05697 Bacterial trigger factor protein (TF) LCQ53_RS10705 PF00574 Clp protease LCQ53_RS10710 PF07724 AAA domain (Cdc48 subfamily) LCQ53_RS10710 PF10431 C-terminal, D2-small domain, of ClpB protein LCQ53_RS10710 PF06689 ClpX C4-type zinc finger LCQ53_RS10715 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_RS10715 PF02190 ATP-dependent protease La (LON) substrate-binding domain LCQ53_RS10715 PF05362 Lon protease (S16) C-terminal proteolytic domain LCQ53_RS10720 PF08245 Mur ligase middle domain LCQ53_RS10720 PF02875 Mur ligase family, glutamate ligase domain LCQ53_RS10730 PF00809 Pterin binding enzyme LCQ53_RS10735 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LCQ53_RS10735 PF02152 Dihydroneopterin aldolase LCQ53_RS10740 PF01817 Chorismate mutase type II LCQ53_RS10740 PF00800 Prephenate dehydratase LCQ53_RS10740 PF01842 ACT domain LCQ53_RS10745 PF00884 Sulfatase LCQ53_RS10750 PF00709 Adenylosuccinate synthetase LCQ53_RS10755 PF10502 Signal peptidase, peptidase S26 LCQ53_RS10765 PF01042 Endoribonuclease L-PSP LCQ53_RS10770 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS10775 PF01554 MatE LCQ53_RS10780 PF00128 Alpha amylase, catalytic domain LCQ53_RS10785 PF00874 PRD domain LCQ53_RS10785 PF05043 Mga helix-turn-helix domain LCQ53_RS10785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS10785 PF08279 HTH domain LCQ53_RS10790 PF03611 PTS system sugar-specific permease component LCQ53_RS10800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS10805 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS10805 PF00107 Zinc-binding dehydrogenase LCQ53_RS10810 PF00834 Ribulose-phosphate 3 epimerase family LCQ53_RS10815 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS10815 PF00107 Zinc-binding dehydrogenase LCQ53_RS10820 PF01380 SIS domain LCQ53_RS10825 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS10830 PF00294 pfkB family carbohydrate kinase LCQ53_RS10835 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS10850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LCQ53_RS10850 PF01872 RibD C-terminal domain LCQ53_RS10855 PF00677 Lumazine binding domain LCQ53_RS10860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LCQ53_RS10860 PF00925 GTP cyclohydrolase II LCQ53_RS10865 PF00885 6,7-dimethyl-8-ribityllumazine synthase LCQ53_RS10870 PF02146 Sir2 family LCQ53_RS10885 PF02424 ApbE family LCQ53_RS10890 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS10900 PF10509 Galactokinase galactose-binding signature LCQ53_RS10900 PF08544 GHMP kinases C terminal LCQ53_RS10900 PF00288 GHMP kinases N terminal domain LCQ53_RS10905 PF01263 Aldose 1-epimerase LCQ53_RS10910 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LCQ53_RS10910 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LCQ53_RS10915 PF16363 GDP-mannose 4,6 dehydratase LCQ53_RS10920 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS10920 PF00072 Response regulator receiver domain LCQ53_RS10930 PF01880 Desulfoferrodoxin LCQ53_RS10930 PF06397 Desulfoferrodoxin, N-terminal domain LCQ53_RS10940 PF02441 Flavoprotein LCQ53_RS10945 PF13537 Glutamine amidotransferase domain LCQ53_RS10945 PF00733 Asparagine synthase LCQ53_RS10990 PF13280 WYL domain LCQ53_RS10990 PF08279 HTH domain LCQ53_RS11000 PF03180 NLPA lipoprotein LCQ53_RS11005 PF00005 ABC transporter LCQ53_RS11005 PF09383 NIL domain LCQ53_RS11010 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS11015 PF02913 FAD linked oxidases, C-terminal domain LCQ53_RS11015 PF01565 FAD binding domain LCQ53_RS11025 PF01784 NIF3 (NGG1p interacting factor 3) LCQ53_RS11040 PF01381 Helix-turn-helix LCQ53_RS11060 PF01434 Peptidase family M41 LCQ53_RS11060 PF17862 AAA+ lid domain LCQ53_RS11060 PF00004 ATPase family associated with various cellular activities (AAA) LCQ53_RS11070 PF01661 Macro domain LCQ53_RS11080 PF00301 Rubredoxin LCQ53_RS11085 PF04073 Aminoacyl-tRNA editing domain LCQ53_RS11090 PF00484 Carbonic anhydrase LCQ53_RS11095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LCQ53_RS11130 PF01381 Helix-turn-helix LCQ53_RS11320 PF09393 Phage tail tube protein LCQ53_RS11350 PF10934 Protein of unknown function (DUF2634) LCQ53_RS11355 PF04865 Baseplate J-like protein LCQ53_RS11385 PF01510 N-acetylmuramoyl-L-alanine amidase LCQ53_RS11385 PF01471 Putative peptidoglycan binding domain LCQ53_RS11425 PF00005 ABC transporter LCQ53_RS11435 PF16657 Maltogenic Amylase, C-terminal domain LCQ53_RS11435 PF02903 Alpha amylase, N-terminal ig-like domain LCQ53_RS11435 PF00128 Alpha amylase, catalytic domain LCQ53_RS11440 PF12072 Domain of unknown function (DUF3552) LCQ53_RS11440 PF00013 KH domain LCQ53_RS11440 PF01966 HD domain LCQ53_RS11445 PF00106 short chain dehydrogenase LCQ53_RS11450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS11450 PF02378 Phosphotransferase system, EIIC LCQ53_RS11450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS11455 PF00455 DeoR C terminal sensor domain LCQ53_RS11455 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS11460 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_RS11460 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_RS11465 PF00293 NUDIX domain LCQ53_RS11475 PF00793 DAHP synthetase I family LCQ53_RS11480 PF12822 ECF transporter, substrate-specific component LCQ53_RS11490 PF00300 Histidine phosphatase superfamily (branch 1) LCQ53_RS11500 PF07687 Peptidase dimerisation domain LCQ53_RS11500 PF01546 Peptidase family M20/M25/M40 LCQ53_RS11505 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_RS11505 PF14821 Threonine synthase N terminus LCQ53_RS11510 PF04542 Sigma-70 region 2 LCQ53_RS11510 PF08281 Sigma-70, region 4 LCQ53_RS11530 PF00005 ABC transporter LCQ53_RS11535 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS11545 PF00069 Protein kinase domain LCQ53_RS11545 PF03793 PASTA domain LCQ53_RS11555 PF00575 S1 RNA binding domain LCQ53_RS11560 PF01264 Chorismate synthase LCQ53_RS11565 PF01702 Queuine tRNA-ribosyltransferase LCQ53_RS11570 PF02699 Preprotein translocase subunit LCQ53_RS11575 PF01717 Cobalamin-independent synthase, Catalytic domain LCQ53_RS11585 PF02811 PHP domain LCQ53_RS11595 PF04055 Radical SAM superfamily LCQ53_RS11600 PF07549 SecD/SecF GG Motif LCQ53_RS11600 PF02355 Protein export membrane protein LCQ53_RS11605 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LCQ53_RS11605 PF17768 RecJ OB domain LCQ53_RS11605 PF02272 DHHA1 domain LCQ53_RS11605 PF01368 DHH family LCQ53_RS11615 PF12320 Type 5 capsule protein repressor C-terminal domain LCQ53_RS11615 PF00149 Calcineurin-like phosphoesterase LCQ53_RS11620 PF13476 AAA domain LCQ53_RS11640 PF02542 YgbB family LCQ53_RS11660 PF00849 RNA pseudouridylate synthase LCQ53_RS11660 PF01479 S4 domain LCQ53_RS11665 PF12826 Helix-hairpin-helix motif LCQ53_RS11665 PF03120 NAD-dependent DNA ligase OB-fold domain LCQ53_RS11665 PF01653 NAD-dependent DNA ligase adenylation domain LCQ53_RS11665 PF00533 BRCA1 C Terminus (BRCT) domain LCQ53_RS11675 PF04204 Homoserine O-succinyltransferase LCQ53_RS11680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS11680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS11680 PF01842 ACT domain LCQ53_RS11685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS11685 PF02378 Phosphotransferase system, EIIC LCQ53_RS11685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS11690 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS11695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS11695 PF02378 Phosphotransferase system, EIIC LCQ53_RS11700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS11720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS11720 PF02378 Phosphotransferase system, EIIC LCQ53_RS11725 PF00107 Zinc-binding dehydrogenase LCQ53_RS11725 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS11730 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS11735 PF00874 PRD domain LCQ53_RS11735 PF05043 Mga helix-turn-helix domain LCQ53_RS11735 PF08279 HTH domain LCQ53_RS11735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS11740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS11750 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS11755 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS11760 PF03772 Competence protein LCQ53_RS11760 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS11760 PF13567 Domain of unknown function (DUF4131) LCQ53_RS11765 PF13416 Bacterial extracellular solute-binding protein LCQ53_RS11770 PF00543 Nitrogen regulatory protein P-II LCQ53_RS11775 PF08402 TOBE domain LCQ53_RS11775 PF00005 ABC transporter LCQ53_RS11780 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS11785 PF00528 Binding-protein-dependent transport system inner membrane component LCQ53_RS11795 PF17910 FeoB cytosolic helical domain LCQ53_RS11795 PF02421 Ferrous iron transport protein B LCQ53_RS11795 PF07670 Nucleoside recognition LCQ53_RS11795 PF07664 Ferrous iron transport protein B C terminus LCQ53_RS11800 PF12146 Serine aminopeptidase, S33 LCQ53_RS11810 PF00817 impB/mucB/samB family LCQ53_RS11810 PF11799 impB/mucB/samB family C-terminal domain LCQ53_RS11830 PF02896 PEP-utilising enzyme, TIM barrel domain LCQ53_RS11830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LCQ53_RS11830 PF00391 PEP-utilising enzyme, mobile domain LCQ53_RS11845 PF00113 Enolase, C-terminal TIM barrel domain LCQ53_RS11845 PF03952 Enolase, N-terminal domain LCQ53_RS11850 PF00578 AhpC/TSA family LCQ53_RS11850 PF10417 C-terminal domain of 1-Cys peroxiredoxin LCQ53_RS11855 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS11860 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS11860 PF17152 Periplasmic sensor domain LCQ53_RS11865 PF02742 Iron dependent repressor, metal binding and dimerisation domain LCQ53_RS11865 PF01325 Iron dependent repressor, N-terminal DNA binding domain LCQ53_RS11880 PF04023 FeoA domain LCQ53_RS11880 PF07670 Nucleoside recognition LCQ53_RS11880 PF07664 Ferrous iron transport protein B C terminus LCQ53_RS11880 PF17910 FeoB cytosolic helical domain LCQ53_RS11880 PF02421 Ferrous iron transport protein B LCQ53_RS11920 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS11920 PF00258 Flavodoxin LCQ53_RS11925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS11925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS11925 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS11935 PF00111 2Fe-2S iron-sulfur cluster binding domain LCQ53_RS11935 PF01799 [2Fe-2S] binding domain LCQ53_RS11940 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LCQ53_RS11940 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LCQ53_RS11940 PF01799 [2Fe-2S] binding domain LCQ53_RS11945 PF01791 DeoC/LacD family aldolase LCQ53_RS11950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS11950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS11955 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS11955 PF00455 DeoR C terminal sensor domain LCQ53_RS11960 PF00294 pfkB family carbohydrate kinase LCQ53_RS11960 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LCQ53_RS11965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS11970 PF02906 Iron only hydrogenase large subunit, C-terminal domain LCQ53_RS11970 PF02256 Iron hydrogenase small subunit LCQ53_RS11970 PF12838 4Fe-4S dicluster domain LCQ53_RS11985 PF01758 Sodium Bile acid symporter family LCQ53_RS11990 PF04542 Sigma-70 region 2 LCQ53_RS11990 PF08281 Sigma-70, region 4 LCQ53_RS12010 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS12010 PF13407 Periplasmic binding protein domain LCQ53_RS12025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS12025 PF02378 Phosphotransferase system, EIIC LCQ53_RS12025 PF00367 phosphotransferase system, EIIB LCQ53_RS12030 PF08244 Glycosyl hydrolases family 32 C terminal LCQ53_RS12030 PF00251 Glycosyl hydrolases family 32 N-terminal domain LCQ53_RS12035 PF00294 pfkB family carbohydrate kinase LCQ53_RS12040 PF03551 Transcriptional regulator PadR-like family LCQ53_RS12060 PF14542 GCN5-related N-acetyl-transferase LCQ53_RS12065 PF13936 Helix-turn-helix domain LCQ53_RS12065 PF04198 Putative sugar-binding domain LCQ53_RS12070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS12075 PF00248 Aldo/keto reductase family LCQ53_RS12080 PF03611 PTS system sugar-specific permease component LCQ53_RS12085 PF01791 DeoC/LacD family aldolase LCQ53_RS12095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS12100 PF13685 Iron-containing alcohol dehydrogenase LCQ53_RS12110 PF00239 Resolvase, N terminal domain LCQ53_RS12110 PF02796 Helix-turn-helix domain of resolvase LCQ53_RS12120 PF01894 Uncharacterised protein family UPF0047 LCQ53_RS12125 PF00899 ThiF family LCQ53_RS12130 PF03601 Conserved hypothetical protein 698 LCQ53_RS12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS12140 PF03466 LysR substrate binding domain LCQ53_RS12145 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS12145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS12145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS12150 PF01012 Electron transfer flavoprotein domain LCQ53_RS12155 PF01012 Electron transfer flavoprotein domain LCQ53_RS12155 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_RS12165 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS12170 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS12175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS12175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS12180 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS12190 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS12195 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS12205 PF01381 Helix-turn-helix LCQ53_RS12215 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS12220 PF12706 Beta-lactamase superfamily domain LCQ53_RS12230 PF00586 AIR synthase related protein, N-terminal domain LCQ53_RS12230 PF02769 AIR synthase related protein, C-terminal domain LCQ53_RS12240 PF00266 Aminotransferase class-V LCQ53_RS12245 PF00149 Calcineurin-like phosphoesterase LCQ53_RS12255 PF01235 Sodium:alanine symporter family LCQ53_RS12265 PF01680 SOR/SNZ family LCQ53_RS12270 PF01174 SNO glutamine amidotransferase family LCQ53_RS12275 PF02545 Maf-like protein LCQ53_RS12285 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS12285 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS12285 PF00563 EAL domain LCQ53_RS12290 PF06949 Protein of unknown function (DUF1292) LCQ53_RS12295 PF00999 Sodium/hydrogen exchanger family LCQ53_RS12305 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LCQ53_RS12310 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LCQ53_RS12310 PF02769 AIR synthase related protein, C-terminal domain LCQ53_RS12310 PF00586 AIR synthase related protein, N-terminal domain LCQ53_RS12315 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_RS12325 PF01554 MatE LCQ53_RS12345 PF00455 DeoR C terminal sensor domain LCQ53_RS12345 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS12350 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS12355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS12355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS12360 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS12365 PF01261 Xylose isomerase-like TIM barrel LCQ53_RS12390 PF00583 Acetyltransferase (GNAT) family LCQ53_RS12395 PF01613 Flavin reductase like domain LCQ53_RS12395 PF00301 Rubredoxin LCQ53_RS12400 PF00356 Bacterial regulatory proteins, lacI family LCQ53_RS12405 PF00294 pfkB family carbohydrate kinase LCQ53_RS12410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_RS12410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_RS12410 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_RS12420 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS12425 PF08191 LRR adjacent LCQ53_RS12425 PF00746 LPXTG cell wall anchor motif LCQ53_RS12425 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) LCQ53_RS12425 PF12799 Leucine Rich repeats (2 copies) LCQ53_RS12425 PF12354 Bacterial adhesion/invasion protein N terminal LCQ53_RS12430 PF14552 Tautomerase enzyme LCQ53_RS12435 PF01012 Electron transfer flavoprotein domain LCQ53_RS12440 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_RS12440 PF01012 Electron transfer flavoprotein domain LCQ53_RS12450 PF01144 Coenzyme A transferase LCQ53_RS12455 PF00378 Enoyl-CoA hydratase/isomerase LCQ53_RS12460 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS12460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS12460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS12465 PF01047 MarR family LCQ53_RS12475 PF02127 Aminopeptidase I zinc metalloprotease (M18) LCQ53_RS12485 PF03063 Prismane/CO dehydrogenase family LCQ53_RS12490 PF00005 ABC transporter LCQ53_RS12490 PF08402 TOBE domain LCQ53_RS12505 PF00266 Aminotransferase class-V LCQ53_RS12510 PF00266 Aminotransferase class-V LCQ53_RS12510 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS12515 PF02535 ZIP Zinc transporter LCQ53_RS12520 PF02824 TGS domain LCQ53_RS12520 PF04607 Region found in RelA / SpoT proteins LCQ53_RS12520 PF13291 ACT domain LCQ53_RS12525 PF02153 Prephenate dehydrogenase LCQ53_RS12525 PF01842 ACT domain LCQ53_RS12530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LCQ53_RS12535 PF02638 Glycosyl hydrolase-like 10 LCQ53_RS12540 PF00574 Clp protease LCQ53_RS12545 PF12833 Helix-turn-helix domain LCQ53_RS12555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS12560 PF03611 PTS system sugar-specific permease component LCQ53_RS12565 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS12565 PF00107 Zinc-binding dehydrogenase LCQ53_RS12570 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS12580 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS12585 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS12585 PF00107 Zinc-binding dehydrogenase LCQ53_RS12590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS12615 PF00474 Sodium:solute symporter family LCQ53_RS12620 PF00210 Ferritin-like domain LCQ53_RS12630 PF12652 CotJB protein LCQ53_RS12635 PF05067 Manganese containing catalase LCQ53_RS12640 PF02742 Iron dependent repressor, metal binding and dimerisation domain LCQ53_RS12640 PF01325 Iron dependent repressor, N-terminal DNA binding domain LCQ53_RS12650 PF07664 Ferrous iron transport protein B C terminus LCQ53_RS12650 PF07670 Nucleoside recognition LCQ53_RS12650 PF02421 Ferrous iron transport protein B LCQ53_RS12650 PF17910 FeoB cytosolic helical domain LCQ53_RS12655 PF12849 PBP superfamily domain LCQ53_RS12660 PF02254 TrkA-N domain LCQ53_RS12660 PF02080 TrkA-C domain LCQ53_RS12665 PF02386 Cation transport protein LCQ53_RS12675 PF00694 Aconitase C-terminal domain LCQ53_RS12680 PF00330 Aconitase family (aconitate hydratase) LCQ53_RS12685 PF00694 Aconitase C-terminal domain LCQ53_RS12690 PF00330 Aconitase family (aconitate hydratase) LCQ53_RS12695 PF02417 Chromate transporter LCQ53_RS12705 PF03466 LysR substrate binding domain LCQ53_RS12705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS12710 PF16916 Dimerisation domain of Zinc Transporter LCQ53_RS12710 PF01545 Cation efflux family LCQ53_RS12745 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_RS12745 PF08239 Bacterial SH3 domain LCQ53_RS12750 PF00561 alpha/beta hydrolase fold LCQ53_RS12750 PF08386 TAP-like protein LCQ53_RS12755 PF03448 MgtE intracellular N domain LCQ53_RS12755 PF00571 CBS domain LCQ53_RS12755 PF01769 Divalent cation transporter LCQ53_RS12760 PF01522 Polysaccharide deacetylase LCQ53_RS12770 PF18318 Glutamine synthetase C-terminal domain LCQ53_RS12770 PF12437 Glutamine synthetase type III N terminal LCQ53_RS12770 PF00120 Glutamine synthetase, catalytic domain LCQ53_RS12775 PF03422 Carbohydrate binding module (family 6) LCQ53_RS12775 PF00457 Glycosyl hydrolases family 11 LCQ53_RS12775 PF01522 Polysaccharide deacetylase LCQ53_RS12780 PF02659 Putative manganese efflux pump LCQ53_RS12785 PF01699 Sodium/calcium exchanger protein LCQ53_RS12790 PF01926 50S ribosome-binding GTPase LCQ53_RS12810 PF13782 Stage V sporulation protein AB LCQ53_RS12815 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LCQ53_RS12820 PF07451 Stage V sporulation protein AD (SpoVAD) LCQ53_RS12825 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LCQ53_RS12830 PF00912 Transglycosylase LCQ53_RS12830 PF00905 Penicillin binding protein transpeptidase domain LCQ53_RS12840 PF09186 Domain of unknown function (DUF1949) LCQ53_RS12840 PF01205 Uncharacterized protein family UPF0029 LCQ53_RS12845 PF00682 HMGL-like LCQ53_RS12845 PF08502 LeuA allosteric (dimerisation) domain LCQ53_RS12865 PF04560 RNA polymerase Rpb2, domain 7 LCQ53_RS12865 PF00562 RNA polymerase Rpb2, domain 6 LCQ53_RS12865 PF10385 RNA polymerase beta subunit external 1 domain LCQ53_RS12865 PF04563 RNA polymerase beta subunit LCQ53_RS12865 PF04565 RNA polymerase Rpb2, domain 3 LCQ53_RS12865 PF04561 RNA polymerase Rpb2, domain 2 LCQ53_RS12880 PF12705 PD-(D/E)XK nuclease superfamily LCQ53_RS12885 PF12705 PD-(D/E)XK nuclease superfamily LCQ53_RS12885 PF00580 UvrD/REP helicase N-terminal domain LCQ53_RS12885 PF13361 UvrD-like helicase C-terminal domain LCQ53_RS12900 PF01979 Amidohydrolase family LCQ53_RS12910 PF00899 ThiF family LCQ53_RS12915 PF05690 Thiazole biosynthesis protein ThiG LCQ53_RS12920 PF06968 Biotin and Thiamin Synthesis associated domain LCQ53_RS12920 PF04055 Radical SAM superfamily LCQ53_RS12925 PF02581 Thiamine monophosphate synthase LCQ53_RS12930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LCQ53_RS12935 PF13091 PLD-like domain LCQ53_RS12940 PF13847 Methyltransferase domain LCQ53_RS12945 PF01430 Hsp33 protein LCQ53_RS12965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS12980 PF12833 Helix-turn-helix domain LCQ53_RS12985 PF04542 Sigma-70 region 2 LCQ53_RS12985 PF04539 Sigma-70 region 3 LCQ53_RS12985 PF04545 Sigma-70, region 4 LCQ53_RS13000 PF01321 Creatinase/Prolidase N-terminal domain LCQ53_RS13000 PF00557 Metallopeptidase family M24 LCQ53_RS13005 PF00365 Phosphofructokinase LCQ53_RS13010 PF03631 Virulence factor BrkB LCQ53_RS13015 PF03123 CAT RNA binding domain LCQ53_RS13015 PF00874 PRD domain LCQ53_RS13020 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS13020 PF03610 PTS system fructose IIA component LCQ53_RS13025 PF03609 PTS system sorbose-specific iic component LCQ53_RS13030 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS13040 PF01238 Phosphomannose isomerase type I LCQ53_RS13045 PF00367 phosphotransferase system, EIIB LCQ53_RS13045 PF02378 Phosphotransferase system, EIIC LCQ53_RS13045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS13050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS13050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS13055 PF01081 KDPG and KHG aldolase LCQ53_RS13060 PF04794 YdjC-like protein LCQ53_RS13065 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS13070 PF03609 PTS system sorbose-specific iic component LCQ53_RS13075 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS13080 PF03610 PTS system fructose IIA component LCQ53_RS13090 PF01409 tRNA synthetases class II core domain (F) LCQ53_RS13090 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LCQ53_RS13095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LCQ53_RS13095 PF01588 Putative tRNA binding domain LCQ53_RS13095 PF03483 B3/4 domain LCQ53_RS13095 PF03484 tRNA synthetase B5 domain LCQ53_RS13095 PF03147 Ferredoxin-fold anticodon binding domain LCQ53_RS13110 PF02547 Queuosine biosynthesis protein LCQ53_RS13120 PF09962 Uncharacterized conserved protein (DUF2196) LCQ53_RS13145 PF01554 MatE LCQ53_RS13155 PF02224 Cytidylate kinase LCQ53_RS13160 PF02401 LytB protein LCQ53_RS13160 PF00575 S1 RNA binding domain LCQ53_RS13165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LCQ53_RS13165 PF02785 Biotin carboxylase C-terminal domain LCQ53_RS13165 PF00289 Biotin carboxylase, N-terminal domain LCQ53_RS13165 PF00364 Biotin-requiring enzyme LCQ53_RS13165 PF02436 Conserved carboxylase domain LCQ53_RS13165 PF00682 HMGL-like LCQ53_RS13170 PF00574 Clp protease LCQ53_RS13180 PF01580 FtsK/SpoIIIE family LCQ53_RS13180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LCQ53_RS13180 PF17854 FtsK alpha domain LCQ53_RS13180 PF09397 Ftsk gamma domain LCQ53_RS13185 PF01268 Formate--tetrahydrofolate ligase LCQ53_RS13190 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LCQ53_RS13190 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LCQ53_RS13195 PF18693 TRAM domain LCQ53_RS13195 PF04055 Radical SAM superfamily LCQ53_RS13195 PF00919 Uncharacterized protein family UPF0004 LCQ53_RS13200 PF01066 CDP-alcohol phosphatidyltransferase LCQ53_RS13205 PF00994 Probable molybdopterin binding domain LCQ53_RS13205 PF18146 Damage-inducible protein CinA KH domain LCQ53_RS13205 PF02464 Competence-damaged protein LCQ53_RS13210 PF00154 recA bacterial DNA recombination protein LCQ53_RS13215 PF02631 RecX family LCQ53_RS13230 PF12848 ABC transporter LCQ53_RS13230 PF00005 ABC transporter LCQ53_RS13235 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LCQ53_RS13240 PF00448 SRP54-type protein, GTPase domain LCQ53_RS13240 PF02978 Signal peptide binding domain LCQ53_RS13240 PF02881 SRP54-type protein, helical bundle domain LCQ53_RS13245 PF00886 Ribosomal protein S16 LCQ53_RS13255 PF03372 Endonuclease/Exonuclease/phosphatase family LCQ53_RS13270 PF03600 Citrate transporter LCQ53_RS13280 PF02664 S-Ribosylhomocysteinase (LuxS) LCQ53_RS13325 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS13325 PF03610 PTS system fructose IIA component LCQ53_RS13330 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS13340 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS13350 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS13355 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS13355 PF00107 Zinc-binding dehydrogenase LCQ53_RS13360 PF07702 UTRA domain LCQ53_RS13360 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS13365 PF03123 CAT RNA binding domain LCQ53_RS13365 PF00874 PRD domain LCQ53_RS13370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS13370 PF02378 Phosphotransferase system, EIIC LCQ53_RS13370 PF00367 phosphotransferase system, EIIB LCQ53_RS13375 PF02378 Phosphotransferase system, EIIC LCQ53_RS13375 PF00367 phosphotransferase system, EIIB LCQ53_RS13380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LCQ53_RS13385 PF01979 Amidohydrolase family LCQ53_RS13405 PF02690 Na+/Pi-cotransporter LCQ53_RS13410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LCQ53_RS13410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LCQ53_RS13415 PF00162 Phosphoglycerate kinase LCQ53_RS13420 PF00121 Triosephosphate isomerase LCQ53_RS13435 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LCQ53_RS13435 PF01676 Metalloenzyme superfamily LCQ53_RS13440 PF03952 Enolase, N-terminal domain LCQ53_RS13440 PF00113 Enolase, C-terminal TIM barrel domain LCQ53_RS13455 PF08206 Ribonuclease B OB domain LCQ53_RS13455 PF00773 RNB domain LCQ53_RS13455 PF00575 S1 RNA binding domain LCQ53_RS13455 PF17876 Cold shock domain LCQ53_RS13460 PF01668 SmpB protein LCQ53_RS13465 PF01183 Glycosyl hydrolases family 25 LCQ53_RS13470 PF00072 Response regulator receiver domain LCQ53_RS13470 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS13500 PF12791 Anti-sigma factor N-terminus LCQ53_RS13505 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS13505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS13520 PF00005 ABC transporter LCQ53_RS13525 PF00072 Response regulator receiver domain LCQ53_RS13525 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS13535 PF01782 RimM N-terminal domain LCQ53_RS13535 PF05239 PRC-barrel domain LCQ53_RS13540 PF01746 tRNA (Guanine-1)-methyltransferase LCQ53_RS13545 PF01245 Ribosomal protein L19 LCQ53_RS13550 PF10502 Signal peptidase, peptidase S26 LCQ53_RS13555 PF01926 50S ribosome-binding GTPase LCQ53_RS13560 PF10502 Signal peptidase, peptidase S26 LCQ53_RS13565 PF01351 Ribonuclease HII LCQ53_RS13570 PF02021 Uncharacterised protein family UPF0102 LCQ53_RS13575 PF02578 Multi-copper polyphenol oxidoreductase laccase LCQ53_RS13580 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LCQ53_RS13580 PF01926 50S ribosome-binding GTPase LCQ53_RS13585 PF02660 Glycerol-3-phosphate acyltransferase LCQ53_RS13590 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LCQ53_RS13590 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LCQ53_RS13595 PF12897 Alanine-glyoxylate amino-transferase LCQ53_RS13600 PF01554 MatE LCQ53_RS13605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LCQ53_RS13605 PF00367 phosphotransferase system, EIIB LCQ53_RS13605 PF02378 Phosphotransferase system, EIIC LCQ53_RS13615 PF16874 Glycosyl hydrolase family 36 C-terminal domain LCQ53_RS13615 PF16875 Glycosyl hydrolase family 36 N-terminal domain LCQ53_RS13620 PF02311 AraC-like ligand binding domain LCQ53_RS13620 PF12833 Helix-turn-helix domain LCQ53_RS13625 PF01678 Diaminopimelate epimerase LCQ53_RS13630 PF01225 Mur ligase family, catalytic domain LCQ53_RS13630 PF02875 Mur ligase family, glutamate ligase domain LCQ53_RS13630 PF08245 Mur ligase middle domain LCQ53_RS13635 PF08501 Shikimate dehydrogenase substrate binding domain LCQ53_RS13635 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LCQ53_RS13640 PF09547 Stage IV sporulation protein A (spore_IV_A) LCQ53_RS13645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LCQ53_RS13645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LCQ53_RS13650 PF04607 Region found in RelA / SpoT proteins LCQ53_RS13655 PF17126 RsmF rRNA methyltransferase first C-terminal domain LCQ53_RS13655 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LCQ53_RS13655 PF01189 16S rRNA methyltransferase RsmB/F LCQ53_RS13660 PF00849 RNA pseudouridylate synthase LCQ53_RS13660 PF01479 S4 domain LCQ53_RS13665 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS13675 PF00849 RNA pseudouridylate synthase LCQ53_RS13675 PF01479 S4 domain LCQ53_RS13680 PF03838 Recombination protein U LCQ53_RS13685 PF08340 Domain of unknown function (DUF1732) LCQ53_RS13685 PF03755 YicC-like family, N-terminal region LCQ53_RS13690 PF00625 Guanylate kinase LCQ53_RS13695 PF01192 RNA polymerase Rpb6 LCQ53_RS13700 PF02673 Bacitracin resistance protein BacA LCQ53_RS13705 PF04545 Sigma-70, region 4 LCQ53_RS13705 PF04539 Sigma-70 region 3 LCQ53_RS13705 PF04542 Sigma-70 region 2 LCQ53_RS13705 PF00140 Sigma-70 factor, region 1.2 LCQ53_RS13710 PF01966 HD domain LCQ53_RS13710 PF13286 Phosphohydrolase-associated domain LCQ53_RS13715 PF01807 CHC2 zinc finger LCQ53_RS13715 PF10410 DnaB-helicase binding domain of primase LCQ53_RS13715 PF08275 DNA primase catalytic core, N-terminal domain LCQ53_RS13720 PF00140 Sigma-70 factor, region 1.2 LCQ53_RS13720 PF03979 Sigma-70 factor, region 1.1 LCQ53_RS13720 PF04539 Sigma-70 region 3 LCQ53_RS13720 PF04542 Sigma-70 region 2 LCQ53_RS13720 PF04545 Sigma-70, region 4 LCQ53_RS13725 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LCQ53_RS13730 PF01784 NIF3 (NGG1p interacting factor 3) LCQ53_RS13735 PF00485 Phosphoribulokinase / Uridine kinase family LCQ53_RS13770 PF07486 Cell Wall Hydrolase LCQ53_RS13770 PF01471 Putative peptidoglycan binding domain LCQ53_RS13785 PF00005 ABC transporter LCQ53_RS13800 PF03466 LysR substrate binding domain LCQ53_RS13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS13805 PF01381 Helix-turn-helix LCQ53_RS13810 PF01242 6-pyruvoyl tetrahydropterin synthase LCQ53_RS13815 PF04055 Radical SAM superfamily LCQ53_RS13820 PF01227 GTP cyclohydrolase I LCQ53_RS13825 PF06508 Queuosine biosynthesis protein QueC LCQ53_RS13830 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS13835 PF01638 HxlR-like helix-turn-helix LCQ53_RS13840 PF00857 Isochorismatase family LCQ53_RS13845 PF01638 HxlR-like helix-turn-helix LCQ53_RS13855 PF00310 Glutamine amidotransferases class-II LCQ53_RS13855 PF01645 Conserved region in glutamate synthase LCQ53_RS13855 PF04898 Glutamate synthase central domain LCQ53_RS13855 PF01493 GXGXG motif LCQ53_RS13860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LCQ53_RS13860 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS13900 PF00072 Response regulator receiver domain LCQ53_RS13900 PF04397 LytTr DNA-binding domain LCQ53_RS13905 PF01594 AI-2E family transporter LCQ53_RS13920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_RS13920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_RS13920 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_RS13930 PF02082 Transcriptional regulator LCQ53_RS13935 PF01554 MatE LCQ53_RS13940 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_RS13945 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LCQ53_RS13945 PF01367 5'-3' exonuclease, C-terminal SAM fold LCQ53_RS13945 PF00476 DNA polymerase family A LCQ53_RS13950 PF01121 Dephospho-CoA kinase LCQ53_RS13955 PF00583 Acetyltransferase (GNAT) family LCQ53_RS13955 PF14268 YoaP-like LCQ53_RS13960 PF13739 Deacetylase PdaC LCQ53_RS13960 PF11738 Protein of unknown function (DUF3298) LCQ53_RS13965 PF08281 Sigma-70, region 4 LCQ53_RS13965 PF04542 Sigma-70 region 2 LCQ53_RS13970 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS13980 PF05167 Uncharacterised ACR (DUF711) LCQ53_RS13985 PF07687 Peptidase dimerisation domain LCQ53_RS13985 PF01546 Peptidase family M20/M25/M40 LCQ53_RS13990 PF01479 S4 domain LCQ53_RS13990 PF00579 tRNA synthetases class I (W and Y) LCQ53_RS14020 PF00012 Hsp70 protein LCQ53_RS14025 PF01628 HrcA protein C terminal domain LCQ53_RS14030 PF01025 GrpE LCQ53_RS14035 PF00012 Hsp70 protein LCQ53_RS14040 PF00684 DnaJ central domain LCQ53_RS14040 PF00226 DnaJ domain LCQ53_RS14040 PF01556 DnaJ C terminal domain LCQ53_RS14055 PF00175 Oxidoreductase NAD-binding domain LCQ53_RS14055 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LCQ53_RS14060 PF13187 4Fe-4S dicluster domain LCQ53_RS14060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LCQ53_RS14060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LCQ53_RS14065 PF00300 Histidine phosphatase superfamily (branch 1) LCQ53_RS14075 PF03471 Transporter associated domain LCQ53_RS14075 PF00999 Sodium/hydrogen exchanger family LCQ53_RS14075 PF02080 TrkA-C domain LCQ53_RS14090 PF04452 RNA methyltransferase LCQ53_RS14095 PF00266 Aminotransferase class-V LCQ53_RS14100 PF02568 Thiamine biosynthesis protein (ThiI) LCQ53_RS14100 PF02926 THUMP domain LCQ53_RS14110 PF04055 Radical SAM superfamily LCQ53_RS14110 PF01938 TRAM domain LCQ53_RS14110 PF00919 Uncharacterized protein family UPF0004 LCQ53_RS14115 PF06135 IreB regulatory phosphoprotein LCQ53_RS14120 PF03652 Holliday junction resolvase LCQ53_RS14130 PF01475 Ferric uptake regulator family LCQ53_RS14135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LCQ53_RS14135 PF17770 Ribonuclease J C-terminal domain LCQ53_RS14135 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS14145 PF01596 O-methyltransferase LCQ53_RS14150 PF01136 Peptidase family U32 LCQ53_RS14150 PF16325 Peptidase family U32 C-terminal domain LCQ53_RS14160 PF03109 ABC1 family LCQ53_RS14170 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_RS14170 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS14180 PF00293 NUDIX domain LCQ53_RS14180 PF13344 Haloacid dehalogenase-like hydrolase LCQ53_RS14185 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS14185 PF00072 Response regulator receiver domain LCQ53_RS14190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS14190 PF18698 Histidine kinase sensor domain LCQ53_RS14190 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS14190 PF00672 HAMP domain LCQ53_RS14200 PF02557 D-alanyl-D-alanine carboxypeptidase LCQ53_RS14220 PF04542 Sigma-70 region 2 LCQ53_RS14220 PF04545 Sigma-70, region 4 LCQ53_RS14235 PF01209 ubiE/COQ5 methyltransferase family LCQ53_RS14250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LCQ53_RS14255 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS14255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_RS14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS14260 PF03466 LysR substrate binding domain LCQ53_RS14265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LCQ53_RS14265 PF08501 Shikimate dehydrogenase substrate binding domain LCQ53_RS14270 PF07690 Major Facilitator Superfamily LCQ53_RS14275 PF01487 Type I 3-dehydroquinase LCQ53_RS14285 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LCQ53_RS14285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LCQ53_RS14290 PF03480 Bacterial extracellular solute-binding protein, family 7 LCQ53_RS14295 PF08501 Shikimate dehydrogenase substrate binding domain LCQ53_RS14295 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LCQ53_RS14300 PF02311 AraC-like ligand binding domain LCQ53_RS14300 PF12833 Helix-turn-helix domain LCQ53_RS14305 PF07690 Major Facilitator Superfamily LCQ53_RS14310 PF01144 Coenzyme A transferase LCQ53_RS14315 PF01575 MaoC like domain LCQ53_RS14320 PF02558 Ketopantoate reductase PanE/ApbA LCQ53_RS14320 PF08546 Ketopantoate reductase PanE/ApbA C terminal LCQ53_RS14330 PF01220 Dehydroquinase class II LCQ53_RS14335 PF01497 Periplasmic binding protein LCQ53_RS14350 PF03703 Bacterial PH domain LCQ53_RS14355 PF03703 Bacterial PH domain LCQ53_RS14360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LCQ53_RS14360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LCQ53_RS14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS14365 PF03466 LysR substrate binding domain LCQ53_RS14370 PF01202 Shikimate kinase LCQ53_RS14375 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS14380 PF09285 Elongation factor P, C-terminal LCQ53_RS14380 PF01132 Elongation factor P (EF-P) OB domain LCQ53_RS14380 PF08207 Elongation factor P (EF-P) KOW-like domain LCQ53_RS14405 PF06686 Stage III sporulation protein AC/AD protein family LCQ53_RS14430 PF03780 Asp23 family, cell envelope-related function LCQ53_RS14435 PF01029 NusB family LCQ53_RS14440 PF02601 Exonuclease VII, large subunit LCQ53_RS14440 PF13742 OB-fold nucleic acid binding domain LCQ53_RS14445 PF02609 Exonuclease VII small subunit LCQ53_RS14450 PF00348 Polyprenyl synthetase LCQ53_RS14455 PF02780 Transketolase, C-terminal domain LCQ53_RS14455 PF02779 Transketolase, pyrimidine binding domain LCQ53_RS14455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LCQ53_RS14460 PF01728 FtsJ-like methyltransferase LCQ53_RS14460 PF01479 S4 domain LCQ53_RS14465 PF01513 ATP-NAD kinase LCQ53_RS14470 PF01316 Arginine repressor, DNA binding domain LCQ53_RS14470 PF02863 Arginine repressor, C-terminal domain LCQ53_RS14475 PF13476 AAA domain LCQ53_RS14480 PF05580 SpoIVB peptidase S55 LCQ53_RS14480 PF17820 PDZ domain LCQ53_RS14485 PF00072 Response regulator receiver domain LCQ53_RS14485 PF08769 Sporulation initiation factor Spo0A C terminal LCQ53_RS14490 PF08769 Sporulation initiation factor Spo0A C terminal LCQ53_RS14490 PF00072 Response regulator receiver domain LCQ53_RS14495 PF05670 NFACT protein RNA binding domain LCQ53_RS14505 PF13393 Histidyl-tRNA synthetase LCQ53_RS14510 PF01634 ATP phosphoribosyltransferase LCQ53_RS14515 PF00815 Histidinol dehydrogenase LCQ53_RS14520 PF00475 Imidazoleglycerol-phosphate dehydratase LCQ53_RS14525 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LCQ53_RS14525 PF01502 Phosphoribosyl-AMP cyclohydrolase LCQ53_RS14535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LCQ53_RS14535 PF01411 tRNA synthetases class II (A) LCQ53_RS14535 PF02272 DHHA1 domain LCQ53_RS14550 PF01165 Ribosomal protein S21 LCQ53_RS14565 PF02562 PhoH-like protein LCQ53_RS14570 PF02130 Uncharacterized protein family UPF0054 LCQ53_RS14590 PF01676 Metalloenzyme superfamily LCQ53_RS14605 PF03477 ATP cone domain LCQ53_RS14605 PF13597 Anaerobic ribonucleoside-triphosphate reductase LCQ53_RS14615 PF00696 Amino acid kinase family LCQ53_RS14615 PF01472 PUA domain LCQ53_RS14620 PF05979 Bacterial protein of unknown function (DUF896) LCQ53_RS14625 PF00171 Aldehyde dehydrogenase family LCQ53_RS14630 PF10531 SLBB domain LCQ53_RS14630 PF13237 4Fe-4S dicluster domain LCQ53_RS14630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LCQ53_RS14630 PF13375 RnfC Barrel sandwich hybrid domain LCQ53_RS14635 PF03116 NQR2, RnfD, RnfE family LCQ53_RS14640 PF04205 FMN-binding domain LCQ53_RS14645 PF02508 Rnf-Nqr subunit, membrane protein LCQ53_RS14650 PF02508 Rnf-Nqr subunit, membrane protein LCQ53_RS14655 PF04060 Putative Fe-S cluster LCQ53_RS14660 PF05239 PRC-barrel domain LCQ53_RS14665 PF03477 ATP cone domain LCQ53_RS14670 PF01078 Magnesium chelatase, subunit ChlI LCQ53_RS14670 PF13335 Magnesium chelatase, subunit ChlI C-terminal LCQ53_RS14675 PF02481 DNA recombination-mediator protein A LCQ53_RS14675 PF17782 DprA winged helix domain LCQ53_RS14680 PF01131 DNA topoisomerase LCQ53_RS14680 PF01751 Toprim domain LCQ53_RS14680 PF01396 Topoisomerase DNA binding C4 zinc finger LCQ53_RS14685 PF06018 CodY GAF-like domain LCQ53_RS14685 PF08222 CodY helix-turn-helix domain LCQ53_RS14690 PF00318 Ribosomal protein S2 LCQ53_RS14695 PF00889 Elongation factor TS LCQ53_RS14700 PF13302 Acetyltransferase (GNAT) domain LCQ53_RS14710 PF01209 ubiE/COQ5 methyltransferase family LCQ53_RS14720 PF00563 EAL domain LCQ53_RS14720 PF05231 MASE1 LCQ53_RS14720 PF08447 PAS fold LCQ53_RS14720 PF08448 PAS fold LCQ53_RS14720 PF13426 PAS domain LCQ53_RS14720 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS14725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LCQ53_RS14725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LCQ53_RS14730 PF13673 Acetyltransferase (GNAT) domain LCQ53_RS14730 PF03352 Methyladenine glycosylase LCQ53_RS14730 PF00117 Glutamine amidotransferase class-I LCQ53_RS14730 PF00958 GMP synthase C terminal domain LCQ53_RS14730 PF13302 Acetyltransferase (GNAT) domain LCQ53_RS14735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS14750 PF00817 impB/mucB/samB family LCQ53_RS14750 PF11799 impB/mucB/samB family C-terminal domain LCQ53_RS14750 PF11798 IMS family HHH motif LCQ53_RS14785 PF13426 PAS domain LCQ53_RS14785 PF08448 PAS fold LCQ53_RS14785 PF08447 PAS fold LCQ53_RS14785 PF05231 MASE1 LCQ53_RS14785 PF00563 EAL domain LCQ53_RS14785 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS14790 PF03707 Bacterial signalling protein N terminal repeat LCQ53_RS14790 PF00563 EAL domain LCQ53_RS14790 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS14795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS14795 PF00072 Response regulator receiver domain LCQ53_RS14795 PF01627 Hpt domain LCQ53_RS14795 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS14795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS14795 PF00672 HAMP domain LCQ53_RS14825 PF00291 Pyridoxal-phosphate dependent enzyme LCQ53_RS14830 PF00294 pfkB family carbohydrate kinase LCQ53_RS14840 PF02361 Cobalt transport protein LCQ53_RS14845 PF00005 ABC transporter LCQ53_RS14850 PF00005 ABC transporter LCQ53_RS14855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LCQ53_RS14860 PF00294 pfkB family carbohydrate kinase LCQ53_RS14865 PF01156 Inosine-uridine preferring nucleoside hydrolase LCQ53_RS14875 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS14880 PF00294 pfkB family carbohydrate kinase LCQ53_RS14885 PF01156 Inosine-uridine preferring nucleoside hydrolase LCQ53_RS14895 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS14895 PF00455 DeoR C terminal sensor domain LCQ53_RS14900 PF04055 Radical SAM superfamily LCQ53_RS14900 PF13187 4Fe-4S dicluster domain LCQ53_RS14905 PF01228 Glycine radical LCQ53_RS14905 PF02901 Pyruvate formate lyase-like LCQ53_RS14910 PF00923 Transaldolase/Fructose-6-phosphate aldolase LCQ53_RS14915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LCQ53_RS14915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LCQ53_RS14920 PF03928 Haem-degrading LCQ53_RS14925 PF00072 Response regulator receiver domain LCQ53_RS14925 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS14935 PF00005 ABC transporter LCQ53_RS14950 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LCQ53_RS14965 PF08220 DeoR-like helix-turn-helix domain LCQ53_RS14965 PF00455 DeoR C terminal sensor domain LCQ53_RS14970 PF00874 PRD domain LCQ53_RS14970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS14970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS14970 PF08279 HTH domain LCQ53_RS14970 PF05043 Mga helix-turn-helix domain LCQ53_RS14975 PF01232 Mannitol dehydrogenase Rossmann domain LCQ53_RS14975 PF08125 Mannitol dehydrogenase C-terminal domain LCQ53_RS14980 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LCQ53_RS14985 PF01380 SIS domain LCQ53_RS14990 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS15000 PF00037 4Fe-4S binding domain LCQ53_RS15000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LCQ53_RS15000 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LCQ53_RS15005 PF02906 Iron only hydrogenase large subunit, C-terminal domain LCQ53_RS15005 PF00037 4Fe-4S binding domain LCQ53_RS15005 PF02256 Iron hydrogenase small subunit LCQ53_RS15005 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LCQ53_RS15010 PF13685 Iron-containing alcohol dehydrogenase LCQ53_RS15015 PF00596 Class II Aldolase and Adducin N-terminal domain LCQ53_RS15020 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS15020 PF00107 Zinc-binding dehydrogenase LCQ53_RS15025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LCQ53_RS15030 PF03611 PTS system sugar-specific permease component LCQ53_RS15040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LCQ53_RS15040 PF05043 Mga helix-turn-helix domain LCQ53_RS15040 PF08279 HTH domain LCQ53_RS15040 PF00874 PRD domain LCQ53_RS15045 PF01381 Helix-turn-helix LCQ53_RS15060 PF01022 Bacterial regulatory protein, arsR family LCQ53_RS15070 PF00403 Heavy-metal-associated domain LCQ53_RS15080 PF12892 Spy0128-like isopeptide containing domain LCQ53_RS15090 PF01488 Shikimate / quinate 5-dehydrogenase LCQ53_RS15090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LCQ53_RS15090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LCQ53_RS15095 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LCQ53_RS15095 PF01488 Shikimate / quinate 5-dehydrogenase LCQ53_RS15100 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LCQ53_RS15100 PF03900 Porphobilinogen deaminase, C-terminal domain LCQ53_RS15105 PF00490 Delta-aminolevulinic acid dehydratase LCQ53_RS15110 PF00202 Aminotransferase class-III LCQ53_RS15115 PF01888 CbiD LCQ53_RS15120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS15125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS15130 PF01890 Cobalamin synthesis G C-terminus LCQ53_RS15130 PF11761 Cobalamin biosynthesis central region LCQ53_RS15130 PF11760 Cobalamin synthesis G N-terminal LCQ53_RS15135 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LCQ53_RS15135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS15140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS15145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LCQ53_RS15145 PF07685 CobB/CobQ-like glutamine amidotransferase domain LCQ53_RS15150 PF02277 Phosphoribosyltransferase LCQ53_RS15160 PF02654 Cobalamin-5-phosphate synthase LCQ53_RS15175 PF03186 CobD/Cbib protein LCQ53_RS15180 PF00155 Aminotransferase class I and II LCQ53_RS15185 PF07685 CobB/CobQ-like glutamine amidotransferase domain LCQ53_RS15190 PF02570 Precorrin-8X methylmutase LCQ53_RS15205 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS15205 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_RS15210 PF01554 MatE LCQ53_RS15215 PF16916 Dimerisation domain of Zinc Transporter LCQ53_RS15215 PF01545 Cation efflux family LCQ53_RS15255 PF00072 Response regulator receiver domain LCQ53_RS15255 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS15260 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS15265 PF12704 MacB-like periplasmic core domain LCQ53_RS15265 PF00005 ABC transporter LCQ53_RS15265 PF02687 FtsX-like permease family LCQ53_RS15285 PF17932 Tetracyclin repressor-like, C-terminal domain LCQ53_RS15285 PF00440 Bacterial regulatory proteins, tetR family LCQ53_RS15290 PF00005 ABC transporter LCQ53_RS15300 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS15310 PF01554 MatE LCQ53_RS15315 PF06180 Cobalt chelatase (CbiK) LCQ53_RS15320 PF00005 ABC transporter LCQ53_RS15325 PF02361 Cobalt transport protein LCQ53_RS15335 PF01891 Cobalt uptake substrate-specific transmembrane region LCQ53_RS15340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LCQ53_RS15340 PF02602 Uroporphyrinogen-III synthase HemD LCQ53_RS15360 PF00075 RNase H LCQ53_RS15365 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS15380 PF01496 V-type ATPase 116kDa subunit family LCQ53_RS15400 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_RS15400 PF16886 ATPsynthase alpha/beta subunit N-term extension LCQ53_RS15400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS15405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LCQ53_RS15405 PF02874 ATP synthase alpha/beta family, beta-barrel domain LCQ53_RS15410 PF01813 ATP synthase subunit D LCQ53_RS15420 PF00171 Aldehyde dehydrogenase family LCQ53_RS15425 PF06463 Molybdenum Cofactor Synthesis C LCQ53_RS15425 PF04055 Radical SAM superfamily LCQ53_RS15430 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS15430 PF00258 Flavodoxin LCQ53_RS15450 PF01048 Phosphorylase superfamily LCQ53_RS15455 PF01979 Amidohydrolase family LCQ53_RS15460 PF02580 D-Tyr-tRNA(Tyr) deacylase LCQ53_RS15465 PF00696 Amino acid kinase family LCQ53_RS15470 PF01765 Ribosome recycling factor LCQ53_RS15475 PF01255 Putative undecaprenyl diphosphate synthase LCQ53_RS15485 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LCQ53_RS15485 PF13288 DXP reductoisomerase C-terminal domain LCQ53_RS15485 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LCQ53_RS15490 PF17820 PDZ domain LCQ53_RS15490 PF02163 Peptidase family M50 LCQ53_RS15495 PF04551 GcpE protein LCQ53_RS15500 PF11490 DNA polymerase III polC-type N-terminus II LCQ53_RS15500 PF07733 Bacterial DNA polymerase III alpha NTPase domain LCQ53_RS15500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LCQ53_RS15500 PF14579 Helix-hairpin-helix motif LCQ53_RS15500 PF02811 PHP domain LCQ53_RS15500 PF00929 Exonuclease LCQ53_RS15505 PF01966 HD domain LCQ53_RS15510 PF00403 Heavy-metal-associated domain LCQ53_RS15515 PF02583 Metal-sensitive transcriptional repressor LCQ53_RS15525 PF01297 Zinc-uptake complex component A periplasmic LCQ53_RS15530 PF00005 ABC transporter LCQ53_RS15535 PF00950 ABC 3 transport family LCQ53_RS15545 PF13361 UvrD-like helicase C-terminal domain LCQ53_RS15545 PF00580 UvrD/REP helicase N-terminal domain LCQ53_RS15550 PF02576 RimP N-terminal domain LCQ53_RS15550 PF17384 RimP C-terminal SH3 domain LCQ53_RS15555 PF13184 NusA-like KH domain LCQ53_RS15555 PF08529 NusA N-terminal domain LCQ53_RS15555 PF00575 S1 RNA binding domain LCQ53_RS15560 PF04296 Protein of unknown function (DUF448) LCQ53_RS15570 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS15570 PF11987 Translation-initiation factor 2 LCQ53_RS15570 PF04760 Translation initiation factor IF-2, N-terminal region LCQ53_RS15575 PF02033 Ribosome-binding factor A LCQ53_RS15580 PF02272 DHHA1 domain LCQ53_RS15580 PF01368 DHH family LCQ53_RS15585 PF16198 tRNA pseudouridylate synthase B C-terminal domain LCQ53_RS15585 PF01509 TruB family pseudouridylate synthase (N terminal domain) LCQ53_RS15590 PF06574 FAD synthetase LCQ53_RS15590 PF01687 Riboflavin kinase LCQ53_RS15610 PF01070 FMN-dependent dehydrogenase LCQ53_RS15620 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LCQ53_RS15620 PF00072 Response regulator receiver domain LCQ53_RS15620 PF01627 Hpt domain LCQ53_RS15620 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS15620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS15620 PF00672 HAMP domain LCQ53_RS15625 PF02899 Phage integrase, N-terminal SAM-like domain LCQ53_RS15625 PF00589 Phage integrase family LCQ53_RS15630 PF01066 CDP-alcohol phosphatidyltransferase LCQ53_RS15655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LCQ53_RS15655 PF03129 Anticodon binding domain LCQ53_RS15655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LCQ53_RS15655 PF02824 TGS domain LCQ53_RS15675 PF01171 PP-loop family LCQ53_RS15680 PF13676 TIR domain LCQ53_RS15685 PF02661 Fic/DOC family LCQ53_RS15685 PF12728 Helix-turn-helix domain LCQ53_RS15690 PF07739 TipAS antibiotic-recognition domain LCQ53_RS15690 PF13411 MerR HTH family regulatory protein LCQ53_RS15700 PF00083 Sugar (and other) transporter LCQ53_RS15715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LCQ53_RS15715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LCQ53_RS15720 PF01842 ACT domain LCQ53_RS15720 PF10369 Small subunit of acetolactate synthase LCQ53_RS15725 PF03816 Cell envelope-related transcriptional attenuator domain LCQ53_RS15730 PF03816 Cell envelope-related transcriptional attenuator domain LCQ53_RS15735 PF00535 Glycosyl transferase family 2 LCQ53_RS15740 PF03989 DNA gyrase C-terminal domain, beta-propeller LCQ53_RS15740 PF00521 DNA gyrase/topoisomerase IV, subunit A LCQ53_RS15745 PF00204 DNA gyrase B LCQ53_RS15745 PF00986 DNA gyrase B subunit, carboxyl terminus LCQ53_RS15745 PF01751 Toprim domain LCQ53_RS15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS15750 PF00563 EAL domain LCQ53_RS15750 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS15750 PF13426 PAS domain LCQ53_RS15770 PF04070 Domain of unknown function (DUF378) LCQ53_RS15800 PF07687 Peptidase dimerisation domain LCQ53_RS15800 PF01546 Peptidase family M20/M25/M40 LCQ53_RS15805 PF07687 Peptidase dimerisation domain LCQ53_RS15805 PF01546 Peptidase family M20/M25/M40 LCQ53_RS15830 PF01416 tRNA pseudouridine synthase LCQ53_RS15860 PF00005 ABC transporter LCQ53_RS15865 PF13411 MerR HTH family regulatory protein LCQ53_RS15895 PF08279 HTH domain LCQ53_RS15895 PF13280 WYL domain LCQ53_RS15920 PF00465 Iron-containing alcohol dehydrogenase LCQ53_RS15925 PF04198 Putative sugar-binding domain LCQ53_RS15930 PF03613 PTS system mannose/fructose/sorbose family IID component LCQ53_RS15935 PF03830 PTS system sorbose subfamily IIB component LCQ53_RS15940 PF00107 Zinc-binding dehydrogenase LCQ53_RS15940 PF08240 Alcohol dehydrogenase GroES-like domain LCQ53_RS15945 PF01116 Fructose-bisphosphate aldolase class-II LCQ53_RS15950 PF01966 HD domain LCQ53_RS15960 PF00132 Bacterial transferase hexapeptide (six repeats) LCQ53_RS15960 PF12804 MobA-like NTP transferase domain LCQ53_RS15965 PF01751 Toprim domain LCQ53_RS15965 PF01131 DNA topoisomerase LCQ53_RS15975 PF13419 Haloacid dehalogenase-like hydrolase LCQ53_RS15980 PF08448 PAS fold LCQ53_RS15980 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS15985 PF00990 Diguanylate cyclase, GGDEF domain LCQ53_RS15985 PF00072 Response regulator receiver domain LCQ53_RS15990 PF00464 Serine hydroxymethyltransferase LCQ53_RS15995 PF00696 Amino acid kinase family LCQ53_RS15995 PF01842 ACT domain LCQ53_RS15995 PF13840 ACT domain LCQ53_RS16000 PF01336 OB-fold nucleic acid binding domain LCQ53_RS16000 PF00152 tRNA synthetases class II (D, K and N) LCQ53_RS16000 PF02938 GAD domain LCQ53_RS16010 PF02913 FAD linked oxidases, C-terminal domain LCQ53_RS16010 PF01565 FAD binding domain LCQ53_RS16015 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_RS16015 PF01012 Electron transfer flavoprotein domain LCQ53_RS16020 PF01012 Electron transfer flavoprotein domain LCQ53_RS16025 PF00392 Bacterial regulatory proteins, gntR family LCQ53_RS16025 PF07729 FCD domain LCQ53_RS16030 PF00766 Electron transfer flavoprotein FAD-binding domain LCQ53_RS16030 PF01012 Electron transfer flavoprotein domain LCQ53_RS16035 PF01012 Electron transfer flavoprotein domain LCQ53_RS16040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LCQ53_RS16040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LCQ53_RS16040 PF02770 Acyl-CoA dehydrogenase, middle domain LCQ53_RS16045 PF02913 FAD linked oxidases, C-terminal domain LCQ53_RS16045 PF01565 FAD binding domain LCQ53_RS16050 PF09861 Lactate racemase N-terminal domain LCQ53_RS16055 PF02652 L-lactate permease LCQ53_RS16060 PF03129 Anticodon binding domain LCQ53_RS16060 PF13393 Histidyl-tRNA synthetase LCQ53_RS16070 PF04055 Radical SAM superfamily LCQ53_RS16075 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS16080 PF02824 TGS domain LCQ53_RS16080 PF04607 Region found in RelA / SpoT proteins LCQ53_RS16080 PF13291 ACT domain LCQ53_RS16085 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LCQ53_RS16085 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LCQ53_RS16090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LCQ53_RS16090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LCQ53_RS16100 PF02590 Predicted SPOUT methyltransferase LCQ53_RS16110 PF14245 Type IV pilin PilA LCQ53_RS16110 PF07963 Prokaryotic N-terminal methylation motif LCQ53_RS16115 PF10518 TAT (twin-arginine translocation) pathway signal sequence LCQ53_RS16115 PF00149 Calcineurin-like phosphoesterase LCQ53_RS16130 PF01638 HxlR-like helix-turn-helix LCQ53_RS16140 PF01966 HD domain LCQ53_RS16140 PF13286 Phosphohydrolase-associated domain LCQ53_RS16145 PF01966 HD domain LCQ53_RS16145 PF13286 Phosphohydrolase-associated domain LCQ53_RS16160 PF00689 Cation transporting ATPase, C-terminus LCQ53_RS16160 PF00690 Cation transporter/ATPase, N-terminus LCQ53_RS16175 PF02308 MgtC family LCQ53_RS16180 PF01545 Cation efflux family LCQ53_RS16180 PF16916 Dimerisation domain of Zinc Transporter LCQ53_RS16185 PF00072 Response regulator receiver domain LCQ53_RS16185 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS16190 PF00690 Cation transporter/ATPase, N-terminus LCQ53_RS16190 PF00689 Cation transporting ATPase, C-terminus LCQ53_RS16215 PF14659 Phage integrase, N-terminal SAM-like domain LCQ53_RS16215 PF00589 Phage integrase family LCQ53_RS16225 PF00437 Type II/IV secretion system protein LCQ53_RS16230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LCQ53_RS16230 PF00437 Type II/IV secretion system protein LCQ53_RS16245 PF00482 Type II secretion system (T2SS), protein F LCQ53_RS16250 PF01478 Type IV leader peptidase family LCQ53_RS16250 PF06750 Bacterial Peptidase A24 N-terminal domain LCQ53_RS16295 PF13411 MerR HTH family regulatory protein LCQ53_RS16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS16305 PF13426 PAS domain LCQ53_RS16305 PF14827 Double sensory domain of two-component sensor kinase LCQ53_RS16305 PF00672 HAMP domain LCQ53_RS16305 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS16315 PF00005 ABC transporter LCQ53_RS16320 PF00072 Response regulator receiver domain LCQ53_RS16320 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS16325 PF02590 Predicted SPOUT methyltransferase LCQ53_RS16330 PF04073 Aminoacyl-tRNA editing domain LCQ53_RS16335 PF04298 Putative neutral zinc metallopeptidase LCQ53_RS16340 PF05922 Peptidase inhibitor I9 LCQ53_RS16340 PF00082 Subtilase family LCQ53_RS16345 PF01709 Transcriptional regulator LCQ53_RS16350 PF00571 CBS domain LCQ53_RS16350 PF03471 Transporter associated domain LCQ53_RS16350 PF01595 Cyclin M transmembrane N-terminal domain LCQ53_RS16355 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LCQ53_RS16360 PF00842 Alanine racemase, C-terminal domain LCQ53_RS16360 PF01168 Alanine racemase, N-terminal domain LCQ53_RS16365 PF01256 Carbohydrate kinase LCQ53_RS16365 PF03853 YjeF-related protein N-terminus LCQ53_RS16370 PF01648 4'-phosphopantetheinyl transferase superfamily LCQ53_RS16375 PF06971 Putative DNA-binding protein N-terminus LCQ53_RS16375 PF02629 CoA binding domain LCQ53_RS16380 PF00005 ABC transporter LCQ53_RS16380 PF16326 ABC transporter C-terminal domain LCQ53_RS16380 PF12848 ABC transporter LCQ53_RS16385 PF00535 Glycosyl transferase family 2 LCQ53_RS16390 PF13411 MerR HTH family regulatory protein LCQ53_RS16395 PF00005 ABC transporter LCQ53_RS16405 PF00082 Subtilase family LCQ53_RS16405 PF05922 Peptidase inhibitor I9 LCQ53_RS16410 PF06969 HemN C-terminal domain LCQ53_RS16410 PF04055 Radical SAM superfamily LCQ53_RS16415 PF03144 Elongation factor Tu domain 2 LCQ53_RS16415 PF00009 Elongation factor Tu GTP binding domain LCQ53_RS16415 PF00679 Elongation factor G C-terminus LCQ53_RS16415 PF06421 GTP-binding protein LepA C-terminus LCQ53_RS16425 PF03418 Germination protease LCQ53_RS16430 PF01649 Ribosomal protein S20 LCQ53_RS16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LCQ53_RS16440 PF03466 LysR substrate binding domain LCQ53_RS16445 PF12804 MobA-like NTP transferase domain LCQ53_RS16450 PF03772 Competence protein LCQ53_RS16450 PF00753 Metallo-beta-lactamase superfamily LCQ53_RS16450 PF13567 Domain of unknown function (DUF4131) LCQ53_RS16460 PF00672 HAMP domain LCQ53_RS16460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LCQ53_RS16460 PF00512 His Kinase A (phospho-acceptor) domain LCQ53_RS16460 PF13426 PAS domain LCQ53_RS16465 PF00486 Transcriptional regulatory protein, C terminal LCQ53_RS16465 PF00072 Response regulator receiver domain LCQ53_RS16480 PF00202 Aminotransferase class-III LCQ53_RS16485 PF00696 Amino acid kinase family LCQ53_RS16490 PF01960 ArgJ family LCQ53_RS16495 PF02774 Semialdehyde dehydrogenase, dimerisation domain LCQ53_RS16495 PF01118 Semialdehyde dehydrogenase, NAD binding domain LCQ53_RS16500 PF00764 Arginosuccinate synthase LCQ53_RS16505 PF02698 DUF218 domain LCQ53_RS16510 PF01131 DNA topoisomerase LCQ53_RS16510 PF01751 Toprim domain LCQ53_RS16515 PF12796 Ankyrin repeats (3 copies) LCQ53_RS16515 PF02661 Fic/DOC family LCQ53_RS16525 PF14698 Argininosuccinate lyase C-terminal LCQ53_RS16525 PF00206 Lyase LCQ53_RS16535 PF08241 Methyltransferase domain LCQ53_RS16540 PF00924 Mechanosensitive ion channel LCQ53_RS16540 PF05552 Conserved TM helix LCQ53_RS16550 PF02774 Semialdehyde dehydrogenase, dimerisation domain LCQ53_RS16550 PF01118 Semialdehyde dehydrogenase, NAD binding domain LCQ53_RS16555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LCQ53_RS16555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LCQ53_RS16560 PF00266 Aminotransferase class-V LCQ53_RS16565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LCQ53_RS16565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LCQ53_RS16565 PF00205 Thiamine pyrophosphate enzyme, central domain LCQ53_RS16570 PF00920 Dehydratase family LCQ53_RS16575 PF00180 Isocitrate/isopropylmalate dehydrogenase LCQ53_RS16590 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_RS16595 PF01520 N-acetylmuramoyl-L-alanine amidase LCQ53_RS16595 PF05036 Sporulation related domain LCQ53_RS16605 PF01726 LexA DNA binding domain LCQ53_RS16605 PF00717 Peptidase S24-like LCQ53_RS16625 PF00082 Subtilase family LCQ53_RS16625 PF06280 Fn3-like domain LCQ53_RS16625 PF00746 LPXTG cell wall anchor motif LCQ53_RS16625 PF02225 PA domain LCQ53_RS16645 PF02502 Ribose/Galactose Isomerase