locus-tag	class	description
AMF_RS05075	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMF_RS05085	COG0772	Belongs to the SEDS family
AMF_RS05090	COG0776	regulation of translation
AMF_RS05115	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMF_RS05120	COG0180	Tryptophanyl-tRNA synthetase
AMF_RS05125	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMF_RS05130	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMF_RS05130	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMF_RS05135	COG0504	CTP synthase activity
AMF_RS05145	COG4974	Belongs to the 'phage' integrase family
AMF_RS05155	COG0280	phosphate acetyltransferase
AMF_RS05155	COG0281	malic enzyme
AMF_RS05165	COG0651	ATP synthesis coupled electron transport
AMF_RS05195	COG2022	thiamine diphosphate biosynthetic process
AMF_RS05245	COG0477	Major facilitator Superfamily
AMF_RS05250	COG0228	four-way junction DNA binding
AMF_RS05255	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMF_RS05270	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AMF_RS05285	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMF_RS05310	COG1840	ABC-type Fe3 transport system, periplasmic component
AMF_RS05335	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMF_RS05375	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMF_RS05380	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AMF_RS05385	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMF_RS05425	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMF_RS05450	COG0517	IMP dehydrogenase activity
AMF_RS05450	COG0516	GMP reductase activity
AMF_RS05455	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMF_RS05465	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMF_RS05470	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMF_RS05485	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMF_RS05490	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMF_RS05495	COG0612	Peptidase, M16
AMF_RS05500	COG0739	heme binding
AMF_RS05510	COG0307	riboflavin synthase, alpha
AMF_RS05545	COG0233	cytoplasmic translational termination
AMF_RS05550	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AMF_RS05555	COG4589	Belongs to the CDS family
AMF_RS05570	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMF_RS05575	COG0124	histidyl-tRNA synthetase
AMF_RS05585	COG1612	heme a metabolic process
AMF_RS05590	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMF_RS05600	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMF_RS05605	COG0717	Belongs to the dCTP deaminase family
AMF_RS05615	COG1278	Cold shock
AMF_RS05620	COG5000	phosphorelay sensor kinase activity
AMF_RS05630	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMF_RS05650	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AMF_RS05670	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMF_RS05675	COG0359	binds to the 23S rRNA
AMF_RS05680	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMF_RS05690	COG1132	(ABC) transporter
AMF_RS05695	COG1053	succinate dehydrogenase
AMF_RS05710	COG2814	Major facilitator Superfamily
AMF_RS05715	COG2255	four-way junction helicase activity
AMF_RS05720	COG0632	four-way junction helicase activity
AMF_RS05725	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMF_RS05730	COG0194	GDP metabolic process
AMF_RS05775	COG3474	cytochrome
AMF_RS05785	COG0651	ATP synthesis coupled electron transport
AMF_RS05790	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AMF_RS05790	COG0574	Belongs to the PEP-utilizing enzyme family
AMF_RS05800	COG0546	phosphoglycolate phosphatase activity
AMF_RS05805	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMF_RS05820	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMF_RS05830	COG2204	response regulator
AMF_RS05845	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMF_RS05880	COG0573	inorganic phosphate transmembrane transporter activity
AMF_RS05905	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMF_RS05925	COG3038	cytochrome b561
AMF_RS05935	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMF_RS05970	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMF_RS05975	COG0049	tRNA binding
AMF_RS05980	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMF_RS06000	COG0250	Participates in transcription elongation, termination and antitermination
AMF_RS06005	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMF_RS06010	COG0081	regulation of translation
AMF_RS06015	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AMF_RS06020	COG0222	ribosome binding
AMF_RS06025	COG0085	RNA polymerase activity
AMF_RS06030	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMF_RS06055	COG0156	8-amino-7-oxononanoate synthase activity
AMF_RS06065	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMF_RS06075	COG0242	peptide deformylase activity
AMF_RS06080	COG0400	carboxylic ester hydrolase activity
AMF_RS06125	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMF_RS06140	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMF_RS06150	COG0351	phosphomethylpyrimidine kinase
AMF_RS06150	COG0352	thiamine-phosphate diphosphorylase activity
AMF_RS06160	COG0628	permease
AMF_RS06210	COG0740	serine-type endopeptidase activity
AMF_RS06215	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMF_RS06220	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMF_RS06235	COG1054	Belongs to the UPF0176 family
AMF_RS06240	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMF_RS06255	COG4536	flavin adenine dinucleotide binding
AMF_RS06265	COG1674	ftsk spoiiie
AMF_RS06275	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMF_RS06280	COG2205	protein histidine kinase activity
AMF_RS06280	COG2202	Pas domain
AMF_RS06290	COG0848	biopolymer transport protein
AMF_RS06300	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMF_RS06305	COG0758	DNA mediated transformation
AMF_RS06325	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMF_RS06330	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMF_RS06340	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AMF_RS06350	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AMF_RS06470	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AMF_RS06510	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AMF_RS06515	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMF_RS06525	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
AMF_RS06570	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMF_RS06585	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMF_RS06600	COG0477	Major facilitator Superfamily
AMF_RS06610	COG0113	porphobilinogen synthase activity
AMF_RS06630	COG0629	single-stranded DNA binding
AMF_RS06640	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMF_RS06650	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMF_RS06665	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMF_RS06685	COG0009	L-threonylcarbamoyladenylate synthase
AMF_RS06705	COG1758	RNA polymerase activity
AMF_RS06720	COG0084	hydrolase, TatD family'
AMF_RS06730	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMF_RS06735	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMF_RS06740	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMF_RS06745	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMF_RS06750	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AMF_RS06760	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMF_RS06770	COG0706	membrane insertase activity
AMF_RS06775	COG1183	phosphatidylcholine synthase activity
AMF_RS06785	COG0493	'glutamate synthase
AMF_RS06785	COG0543	2 iron, 2 sulfur cluster binding
AMF_RS06800	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMF_RS06810	COG0564	pseudouridine synthase activity
AMF_RS06820	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMF_RS06835	COG3932	Exopolysaccharide synthesis, ExoD
AMF_RS06845	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMF_RS06865	COG0358	DNA primase activity
AMF_RS06870	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AMF_RS06875	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AMF_RS06880	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AMF_RS06915	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMF_RS06915	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMF_RS06920	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMF_RS06935	COG0736	holo-[acyl-carrier-protein] synthase activity
AMF_RS06955	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMF_RS06960	COG0492	ferredoxin-NADP+ reductase activity
AMF_RS06965	COG0450	alkyl hydroperoxide reductase
AMF_RS06975	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMF_RS07015	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMF_RS07020	COG1185	polyribonucleotide nucleotidyltransferase activity
AMF_RS07030	COG0481	GTPase activity
AMF_RS07120	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMF_RS07130	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMF_RS07145	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMF_RS07155	COG0149	triose-phosphate isomerase activity
AMF_RS07160	COG2358	TRAP transporter, solute receptor (TAXI family
AMF_RS07175	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMF_RS07180	COG0039	L-malate dehydrogenase activity
AMF_RS07205	COG0698	ribose 5-phosphate isomerase
AMF_RS07260	COG1028	Short-chain dehydrogenase reductase Sdr
AMF_RS07280	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMF_RS07285	COG0708	Exodeoxyribonuclease III
AMF_RS07315	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMF_RS07330	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMF_RS07345	COG0275	rRNA processing
AMF_RS07350	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMF_RS07390	COG0312	modulator of DNA gyrase
AMF_RS07395	COG0302	gtp cyclohydrolase
AMF_RS07400	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMF_RS07415	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMF_RS07420	COG0606	chelatase, subunit chli
AMF_RS07465	COG1034	ATP synthesis coupled electron transport
AMF_RS07475	COG0187	DNA topoisomerase II activity
AMF_RS07485	COG3088	subunit of a heme lyase
AMF_RS07495	COG0633	Ferredoxin
AMF_RS07500	COG0443	Heat shock 70 kDa protein
AMF_RS07505	COG0484	heat shock protein binding
AMF_RS07510	COG0316	Belongs to the HesB IscA family
AMF_RS07515	COG0822	iron-sulfur transferase activity
AMF_RS07520	COG1104	cysteine desulfurase activity
AMF_RS07530	COG2945	thiolester hydrolase activity
AMF_RS07535	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
AMF_RS07545	COG0101	tRNA pseudouridine synthase activity
AMF_RS07560	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AMF_RS07585	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMF_RS07620	COG1381	Involved in DNA repair and RecF pathway recombination
AMF_RS07640	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMF_RS07660	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AMF_RS07670	COG0154	amidase activity
AMF_RS07675	COG0285	dihydrofolate synthase activity
AMF_RS07680	COG0181	hydroxymethylbilane synthase activity
AMF_RS07685	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMF_RS07700	COG0681	Belongs to the peptidase S26 family
AMF_RS07705	COG0316	Belongs to the HesB IscA family
AMF_RS07740	COG1217	gtp-binding protein TYPA
AMF_RS07750	COG0861	Integral membrane protein TerC family
AMF_RS07765	COG0195	Participates in both transcription termination and antitermination
AMF_RS07765	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMF_RS07775	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMF_RS07780	COG0805	protein transport
AMF_RS07795	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AMF_RS07800	COG1007	ATP synthesis coupled electron transport
AMF_RS07810	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMF_RS07840	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMF_RS07865	COG0408	coproporphyrinogen oxidase activity
AMF_RS07870	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMF_RS07875	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMF_RS07880	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMF_RS07885	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMF_RS07890	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMF_RS07940	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMF_RS07955	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMF_RS07965	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMF_RS07975	COG0424	maF-like protein
AMF_RS07990	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMF_RS07995	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMF_RS08000	COG1160	GTP binding
AMF_RS08010	COG0505	Belongs to the CarA family
AMF_RS08015	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AMF_RS08020	COG0756	dUTP diphosphatase activity
AMF_RS08040	COG3704	protein secretion by the type IV secretion system
AMF_RS08040	COG1340	protein secretion by the type IV secretion system
AMF_RS08045	COG3704	protein secretion by the type IV secretion system
AMF_RS08055	COG3451	type IV secretory pathway VirB4
AMF_RS08065	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMF_RS08070	COG0581	inorganic phosphate transmembrane transporter activity
AMF_RS08100	COG4770	biotin carboxylase activity
AMF_RS08105	COG0564	pseudouridine synthase activity
AMF_RS08145	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMF_RS08150	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMF_RS08160	COG2867	negative regulation of translational initiation
AMF_RS08170	COG1530	ribonuclease E activity
AMF_RS08180	COG2111	Na H antiporter
AMF_RS08210	COG2885	chlorophyll binding
AMF_RS08220	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMF_RS08230	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMF_RS08265	COG0590	tRNA wobble adenosine to inosine editing
AMF_RS08275	COG0416	fatty acid biosynthetic process
AMF_RS08285	COG0343	queuine tRNA-ribosyltransferase activity
AMF_RS08300	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMF_RS08305	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMF_RS08355	COG0203	ribosomal protein L17
AMF_RS08370	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AMF_RS08375	COG0563	adenylate kinase activity
AMF_RS08385	COG0200	Binds to the 23S rRNA
AMF_RS08390	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AMF_RS08395	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMF_RS08400	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMF_RS08405	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMF_RS08410	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AMF_RS08415	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMF_RS08425	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AMF_RS08435	COG0255	Belongs to the universal ribosomal protein uL29 family
AMF_RS08445	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMF_RS08450	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AMF_RS08455	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMF_RS08460	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMF_RS08465	COG0089	rRNA binding
AMF_RS08470	COG0088	Forms part of the polypeptide exit tunnel
AMF_RS08475	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMF_RS08480	COG0051	transcription antitermination factor activity, RNA binding
AMF_RS08500	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMF_RS08505	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMF_RS08510	COG0539	negative regulation of cytoplasmic translation
AMF_RS08515	COG0616	signal peptide processing
AMF_RS08520	COG0776	regulation of translation
AMF_RS08545	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMF_RS08565	COG0666	response to abiotic stimulus
AMF_RS08570	COG1074	ATP-dependent DNA helicase activity
AMF_RS08615	COG0114	fumarate hydratase activity
AMF_RS08620	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMF_RS08625	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMF_RS08630	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMF_RS08635	COG0321	lipoyl(octanoyl) transferase activity
AMF_RS08640	COG2003	Belongs to the UPF0758 family
AMF_RS08645	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AMF_RS08650	COG0459	protein refolding
AMF_RS08655	COG1028	Short-chain dehydrogenase reductase Sdr
AMF_RS08660	COG0542	response to heat
AMF_RS08675	COG3485	protocatechuate 3,4-dioxygenase
AMF_RS08690	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMF_RS08700	COG0047	phosphoribosylformylglycinamidine synthase activity
AMF_RS08705	COG0445	tRNA wobble uridine modification
AMF_RS08710	COG1494	fructose-1,6-bisphosphatase
AMF_RS08730	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AMF_RS08735	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AMF_RS08750	COG4783	chaperone-mediated protein folding
AMF_RS08770	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMF_RS08775	COG4974	Belongs to the 'phage' integrase family
AMF_RS08795	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMF_RS08810	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMF_RS08815	COG2226	methyltransferase
AMF_RS08820	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMF_RS08835	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMF_RS08840	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMF_RS08845	COG0109	protoheme IX farnesyltransferase activity
AMF_RS08850	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMF_RS08855	COG0151	Belongs to the GarS family
AMF_RS08865	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMF_RS08870	COG0592	DNA-directed DNA polymerase activity
AMF_RS08880	COG0745	RESPONSE REGULATOR receiver
AMF_RS08900	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMF_RS08905	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMF_RS08910	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AMF_RS08925	COG0489	protein tyrosine kinase activity
AMF_RS08930	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMF_RS08935	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMF_RS08940	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMF_RS08950	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AMF_RS09020	COG0330	HflC and HflK could
AMF_RS09025	COG0330	HflC and HflK could
AMF_RS09040	COG0571	ribonuclease III activity
AMF_RS09045	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMF_RS09075	COG0612	Peptidase, M16
AMF_RS09080	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AMF_RS09085	COG0196	riboflavin kinase activity
AMF_RS09090	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMF_RS09095	COG2890	protein-(glutamine-N5) methyltransferase activity
AMF_RS09100	COG0024	Methionine aminopeptidase
AMF_RS09105	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMF_RS09120	COG1686	Belongs to the peptidase S11 family
AMF_RS09135	COG0750	zinc metalloprotease
AMF_RS09140	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AMF_RS09150	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMF_RS09155	COG0138	bifunctional purine biosynthesis protein purh
AMF_RS09160	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMF_RS09165	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMF_RS09170	COG0741	lytic transglycosylase activity
AMF_RS09175	COG3346	SURF1 family
AMF_RS09185	COG0371	Dehydrogenase
AMF_RS09200	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMF_RS09215	COG0849	cell division
AMF_RS09220	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMF_RS09235	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMF_RS09275	COG0552	protein localization to endoplasmic reticulum
AMF_RS09280	COG0473	3-isopropylmalate dehydrogenase activity
AMF_RS09285	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
AMF_RS09285	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AMF_RS09290	COG0617	tRNA 3'-terminal CCA addition
AMF_RS09295	COG0105	UTP biosynthetic process
AMF_RS09300	COG1396	sequence-specific DNA binding
AMF_RS09400	COG1138	Cytochrome C-type biogenesis protein
AMF_RS09410	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMF_RS09420	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AMF_RS09425	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMF_RS09430	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMF_RS09470	COG0372	Belongs to the citrate synthase family
AMF_RS09475	COG0519	Catalyzes the synthesis of GMP from XMP
AMF_RS09485	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMF_RS09490	COG1830	Aldolase
AMF_RS09500	COG0768	penicillin binding
AMF_RS09515	COG0156	8-amino-7-oxononanoate synthase activity
AMF_RS09530	COG0174	glutamine synthetase
AMF_RS09535	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMF_RS09540	COG0142	geranyltranstransferase activity
AMF_RS09550	COG1127	ABC transporter
AMF_RS09555	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMF_RS09560	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMF_RS09575	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMF_RS09580	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMF_RS09625	COG0728	peptidoglycan biosynthetic process
AMF_RS09630	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMF_RS09650	COG0242	peptide deformylase activity
AMF_RS09655	COG1573	uracil-dna glycosylase
AMF_RS09685	COG0556	nucleotide-excision repair
AMF_RS09690	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AMF_RS09710	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AMF_RS09740	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMF_RS09745	COG1192	Involved in chromosome partitioning
AMF_RS09750	COG1475	DNA binding
AMF_RS09760	COG0336	Belongs to the RNA methyltransferase TrmD family
AMF_RS09765	COG0335	large ribosomal subunit rRNA binding
AMF_RS09770	COG1058	Belongs to the CinA family
AMF_RS09770	COG1546	Belongs to the CinA family
AMF_RS09775	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMF_RS09780	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMF_RS09785	COG0802	atpase or kinase
AMF_RS09790	COG0670	Belongs to the BI1 family
AMF_RS09795	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMF_RS09800	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMF_RS09820	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AMF_RS09830	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMF_RS09840	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMF_RS09865	COG0484	heat shock protein binding
AMF_RS09870	COG0157	Belongs to the NadC ModD family
AMF_RS09875	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMF_RS09880	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMF_RS09885	COG1845	cytochrome c oxidase, subunit III
AMF_RS09890	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMF_RS09905	COG4695	Portal protein
AMF_RS09915	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AMF_RS09920	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMF_RS09925	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMF_RS09930	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMF_RS09935	COG3505	Type IV secretory pathway VirD4
AMF_RS09940	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
AMF_RS09945	COG2948	multi-organism process
AMF_RS10000	COG1570	exodeoxyribonuclease VII activity
AMF_RS10010	COG2171	N-acyltransferase activity
AMF_RS10020	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMF_RS10025	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMF_RS10035	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AMF_RS10040	COG0193	aminoacyl-tRNA hydrolase activity
AMF_RS10045	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMF_RS10070	COG1040	competence protein
AMF_RS10075	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMF_RS10090	COG1981	membrane
AMF_RS10095	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMF_RS10095	COG0022	dehydrogenase e1 component
AMF_RS10110	COG0312	modulator of DNA gyrase
AMF_RS10115	COG0012	GTP binding
AMF_RS10125	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AMF_RS10125	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity